Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 175 of 295
Found at i:59861678 original size:46 final size:46
Alignment explanation
Indices: 59861622--59861843 Score: 279
Period size: 46 Copynumber: 4.8 Consensus size: 46
59861612 TATTTGGGCA
59861622 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * * * *
59861668 TCTGAACTCGTTGAGTTGAGTCCAAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG
59861713 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * *
59861761 TCTGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* *
59861807 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
59861844 GCGGGTTACA
Statistics
Matches: 149, Mismatches: 20, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
43 6 0.04
45 4 0.03
46 102 0.68
47 27 0.18
48 4 0.03
50 6 0.04
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:59861777 original size:93 final size:94
Alignment explanation
Indices: 59861618--59861843 Score: 338
Period size: 93 Copynumber: 2.4 Consensus size: 94
59861608 GGGATATTTG
59861618 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCTGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCTGAACTCGTTGAG
* * *
59861683 TTGAGTCCAAGTTC-GTGA-GATG-TAAC
66 TTGAGTCCAAGTTCACTCAGGATGCGAAC
59861709 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCTGAACTCGTTG
1 --GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCTGAACTCGTTG
*
59861774 AGTTGAGTCCGAGTTCACTCATGGATGCGAAC
64 AGTTGAGTCCAAGTTCACTCA-GGATGCGAAC
*
59861806 -GC--CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
59861844 GCGGGTTACA
Statistics
Matches: 124, Mismatches: 5, Indels: 9
0.90 0.04 0.07
Matches are distributed among these distances:
92 35 0.28
93 78 0.63
94 4 0.03
96 4 0.03
97 3 0.02
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (94 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCTGAACTCGTTGAG
TTGAGTCCAAGTTCACTCAGGATGCGAAC
Found at i:59864747 original size:15 final size:15
Alignment explanation
Indices: 59864727--59864795 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
59864717 GTATCTTGGG
59864727 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
59864742 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
59864757 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
59864772 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
59864787 TTTCTTTAT
1 TTTCTTTAT
59864796 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:59864796 original size:30 final size:30
Alignment explanation
Indices: 59864718--59864805 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
59864708 CATAGTATCG
* * * *
59864718 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
59864748 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
59864778 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
59864806 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:59866775 original size:46 final size:46
Alignment explanation
Indices: 59866720--59866986 Score: 285
Period size: 46 Copynumber: 5.8 Consensus size: 46
59866710 TTTGGGCATA
59866720 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTC
* * * * * *
59866766 CAAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCAGC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG--TC
59866813 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTC
* * * * *
59866859 CGAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATGTAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG--TC
* * *
59866906 CGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAATGCC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTC
*
59866952 CGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
59866987 GCGGGTTACA
Statistics
Matches: 181, Mismatches: 26, Indels: 28
0.77 0.11 0.12
Matches are distributed among these distances:
43 12 0.07
45 8 0.04
46 87 0.48
47 55 0.30
48 8 0.04
50 11 0.06
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTC
Found at i:59866837 original size:47 final size:47
Alignment explanation
Indices: 59866768--59866932 Score: 221
Period size: 47 Copynumber: 3.5 Consensus size: 47
59866758 CAAATGTCCA
*
59866768 AACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCAGCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCG
* * * *
59866815 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG--TCCG
1 AACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCATCCG
*
59866861 AACTCGTTGAGTTGAGTCTGAGTTCGTGAGATGTAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCG
59866908 AACTCGTTGAGTTGAGTCCGAGTTC
1 AACTCGTTGAGTTGAGTCCGAGTTC
59866933 ACTCATGGAT
Statistics
Matches: 100, Mismatches: 11, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
43 6 0.06
45 4 0.04
46 27 0.27
47 53 0.53
48 4 0.04
50 6 0.06
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (47 bp):
AACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCG
Found at i:59866852 original size:93 final size:93
Alignment explanation
Indices: 59866720--59866978 Score: 455
Period size: 93 Copynumber: 2.8 Consensus size: 93
59866710 TTTGGGCATA
*
59866720 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCAAACTCGTTGAGTTGAGT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGTTGAGT
59866785 CCGAGTTCGTGAGATGTAACTAGGCAGC
66 CCGAGTTCGTGAGATGTAACTAGGCAGC
59866813 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGTTGAGT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGTTGAGT
* *
59866878 CTGAGTTCGTGAGATGTAACTAGGCATC
66 CCGAGTTCGTGAGATGTAACTAGGCAGC
* * * *
59866906 CGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAATGCCCGAGCTCGTTGAGTTGAGT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGTTGAGT
59866971 CCGAGTTC
66 CCGAGTTC
59866979 ACTTATGGGC
Statistics
Matches: 158, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 158 1.00
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGTTGAGT
CCGAGTTCGTGAGATGTAACTAGGCAGC
Found at i:59868369 original size:40 final size:40
Alignment explanation
Indices: 59868323--59868409 Score: 133
Period size: 40 Copynumber: 2.2 Consensus size: 40
59868313 TTATGAATAC
59868323 ATCATGTGCATTTCATACATATCATGTGCAT-TTCATA-CA
1 ATCATGTGCATTTCATACATATCATGTGCATATT-ATATCA
*
59868362 TATCATGTGCATTTTATACATATCATGTGCATATTATATCA
1 -ATCATGTGCATTTCATACATATCATGTGCATATTATATCA
59868403 ATCATGT
1 ATCATGT
59868410 ATATCATATC
Statistics
Matches: 44, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
40 40 0.91
41 4 0.09
ACGTcount: A:0.31, C:0.17, G:0.10, T:0.41
Consensus pattern (40 bp):
ATCATGTGCATTTCATACATATCATGTGCATATTATATCA
Found at i:59868409 original size:20 final size:20
Alignment explanation
Indices: 59868323--59868393 Score: 133
Period size: 20 Copynumber: 3.5 Consensus size: 20
59868313 TTATGAATAC
59868323 ATCATGTGCATTTCATACAT
1 ATCATGTGCATTTCATACAT
59868343 ATCATGTGCATTTCATACAT
1 ATCATGTGCATTTCATACAT
*
59868363 ATCATGTGCATTTTATACAT
1 ATCATGTGCATTTCATACAT
59868383 ATCATGTGCAT
1 ATCATGTGCAT
59868394 ATTATATCAA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
20 50 1.00
ACGTcount: A:0.30, C:0.18, G:0.11, T:0.41
Consensus pattern (20 bp):
ATCATGTGCATTTCATACAT
Found at i:59869178 original size:27 final size:27
Alignment explanation
Indices: 59869117--59869193 Score: 86
Period size: 27 Copynumber: 2.9 Consensus size: 27
59869107 GGCGTATTCA
59869117 TCATTTTACCATACAAGGGTATTACGG
1 TCATTTTACCATACAAGGGTATTACGG
* *
59869144 TCACTTTACCCTACAAGGGCT-TTACGG
1 TCATTTTACCATACAAGGG-TATTACGG
* *
59869171 TCTTTTTACC-TATTAAGGGTATT
1 TCATTTTACCATA-CAAGGGTATT
59869194 TTAGTCATTT
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
26 3 0.07
27 38 0.90
28 1 0.02
ACGTcount: A:0.25, C:0.21, G:0.17, T:0.38
Consensus pattern (27 bp):
TCATTTTACCATACAAGGGTATTACGG
Found at i:59869254 original size:27 final size:27
Alignment explanation
Indices: 59869211--59869497 Score: 154
Period size: 27 Copynumber: 10.6 Consensus size: 27
59869201 TTTCATCCTA
* * *
59869211 CAAGGGTGTTTTGGTAAATCTACAAAT
1 CAAGGGTATTTTAGTAAATTTACAAAT
* **
59869238 CAAGGGTATTTCT-GTAATTTTGTAAAT
1 CAAGGGTATTT-TAGTAAATTTACAAAT
* * *
59869265 CAGGGGTATTTCTA-TAATTTTCCAAAT
1 CAAGGGTATTT-TAGTAAATTTACAAAT
* ** *
59869292 CAAAGGTATTTCGGTAAATTTCCAAAT
1 CAAGGGTATTTTAGTAAATTTACAAAT
* * *
59869319 TAGGGGTATTTTAGTAATTTTACAAAT
1 CAAGGGTATTTTAGTAAATTTACAAAT
** *
59869346 TGAGGGTATTTTAGTAAATTTACAAGT
1 CAAGGGTATTTTAGTAAATTTACAAAT
* *
59869373 CGAGGGTATTTTAGT-AATTT-CATAGGT
1 CAAGGGTATTTTAGTAAATTTACA-A-AT
** * **
59869400 TGAGGATATTTCGGT-AATTTCACAAAT
1 CAAGGGTATTTTAGTAAATTT-ACAAAT
* * *
59869427 CAGGGGTATTTTGGTAATTTTACAAA-
1 CAAGGGTATTTTAGTAAATTTACAAAT
* * * ** *
59869453 CTGAGGGTATTTTGGTAATTTTGTAAAC
1 C-AAGGGTATTTTAGTAAATTTACAAAT
*
59869481 CAAGGGTATTTCAGTAA
1 CAAGGGTATTTTAGTAA
59869498 TTCTACCCTA
Statistics
Matches: 207, Mismatches: 43, Indels: 20
0.77 0.16 0.07
Matches are distributed among these distances:
25 2 0.01
26 7 0.03
27 189 0.91
28 7 0.03
29 2 0.01
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTAGTAAATTTACAAAT
Found at i:59869292 original size:54 final size:54
Alignment explanation
Indices: 59869231--59869499 Score: 213
Period size: 54 Copynumber: 5.0 Consensus size: 54
59869221 TTGGTAAATC
* * **
59869231 TACAAATCAAGGGTATTTCTGTAATTTTGTAAATCAGGGGTATTTCTA-TAATTT
1 TACAAATCAAGGGTATTTCGGTAAATTTCCAAATCAGGGGTATTT-TAGTAATTT
* * *
59869285 TCCAAATCAAAGGTATTTCGGTAAATTTCCAAATTAGGGGTATTTTAGTAATTT
1 TACAAATCAAGGGTATTTCGGTAAATTTCCAAATCAGGGGTATTTTAGTAATTT
** ** * *
59869339 TACAAATTGAGGGTATTTTAGTAAATTTACAAGTC-GAGGGTATTTTAGTAATTT
1 TACAAATCAAGGGTATTTCGGTAAATTTCCAAATCAG-GGGTATTTTAGTAATTT
* * ** ** * *
59869393 CATAGGTTGAGGATATTTCGGT-AATTTCACAAATCAGGGGTATTTTGGTAATTT
1 TACAAATCAAGGGTATTTCGGTAAATTTC-CAAATCAGGGGTATTTTAGTAATTT
* * * ** * * *
59869447 TACAAA-CTGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTCAGTAATT
1 TACAAATC-AAGGGTATTTCGGTAAATTTCCAAATCAGGGGTATTTTAGTAATT
59869500 CTACCCTACA
Statistics
Matches: 169, Mismatches: 40, Indels: 12
0.76 0.18 0.05
Matches are distributed among these distances:
53 8 0.05
54 156 0.92
55 5 0.03
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.40
Consensus pattern (54 bp):
TACAAATCAAGGGTATTTCGGTAAATTTCCAAATCAGGGGTATTTTAGTAATTT
Found at i:59869410 original size:81 final size:81
Alignment explanation
Indices: 59869325--59869473 Score: 194
Period size: 81 Copynumber: 1.8 Consensus size: 81
59869315 AAATTAGGGG
* * * *
59869325 TATTTTAGTAATTTTACAAAT-TGAGGGTATTTTAGTAAATTTAC-AAGTCGAGGGTATTTTAGT
1 TATTTCAGTAATTTCACAAATCAG-GGGTATTTTAGTAAATTTACAAACT-GAGGGTATTTTAGT
59869388 AATTTCATAGGTTGAGGA
64 AATTTCATAGGTTGAGGA
* * * *
59869406 TATTTCGGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAACTGAGGGTATTTTGGTAA
1 TATTTCAGTAATTTCACAAATCAGGGGTATTTTAGTAAATTTACAAACTGAGGGTATTTTAGTAA
59869471 TTT
66 TTT
59869474 TGTAAACCAA
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
81 54 0.93
82 4 0.07
ACGTcount: A:0.30, C:0.07, G:0.21, T:0.42
Consensus pattern (81 bp):
TATTTCAGTAATTTCACAAATCAGGGGTATTTTAGTAAATTTACAAACTGAGGGTATTTTAGTAA
TTTCATAGGTTGAGGA
Found at i:59871000 original size:20 final size:19
Alignment explanation
Indices: 59870977--59871018 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
59870967 AGATTATATA
59870977 TATTAT-ATTATATAATTGAT
1 TATTATAATTAT-TAATTG-T
59870997 TATTATAATTATTAATTGT
1 TATTATAATTATTAATTGT
59871016 TAT
1 TAT
59871019 GGTTTTATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 4 0.19
20 12 0.57
21 5 0.24
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (19 bp):
TATTATAATTATTAATTGT
Found at i:59872234 original size:13 final size:13
Alignment explanation
Indices: 59872216--59872241 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
59872206 ATGAATGTGT
59872216 GGTAAGTATTTAA
1 GGTAAGTATTTAA
59872229 GGTAAGTATTTAA
1 GGTAAGTATTTAA
59872242 TGAACTGATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.23, T:0.38
Consensus pattern (13 bp):
GGTAAGTATTTAA
Found at i:59872650 original size:45 final size:45
Alignment explanation
Indices: 59872600--59872703 Score: 181
Period size: 45 Copynumber: 2.3 Consensus size: 45
59872590 CTACTGTTAT
* *
59872600 TGTTACTGTTACTGTTACCGATTCGACACTTTGTGTGTCGAATAC
1 TGTTACTGTTACTGTTACAGATTCAACACTTTGTGTGTCGAATAC
*
59872645 TGTTACTGTTACTGTTACAGATTCAACACTTTGTGTGTTGAATAC
1 TGTTACTGTTACTGTTACAGATTCAACACTTTGTGTGTCGAATAC
59872690 TGTTACTGTTACTG
1 TGTTACTGTTACTG
59872704 CTACTGCTAC
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 56 1.00
ACGTcount: A:0.21, C:0.17, G:0.19, T:0.42
Consensus pattern (45 bp):
TGTTACTGTTACTGTTACAGATTCAACACTTTGTGTGTCGAATAC
Found at i:59872698 original size:6 final size:6
Alignment explanation
Indices: 59872687--59872728 Score: 57
Period size: 6 Copynumber: 6.8 Consensus size: 6
59872677 GTGTGTTGAA
* *
59872687 TACTGT TACTGT TACTGC TACTGC TACTGT TACTGAT TACTG
1 TACTGT TACTGT TACTGT TACTGT TACTGT TACTG-T TACTG
59872729 ATCAAGTACT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
6 27 0.82
7 6 0.18
ACGTcount: A:0.19, C:0.21, G:0.17, T:0.43
Consensus pattern (6 bp):
TACTGT
Found at i:59877119 original size:26 final size:26
Alignment explanation
Indices: 59877089--59877170 Score: 164
Period size: 26 Copynumber: 3.2 Consensus size: 26
59877079 TGAAATGCCC
59877089 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
59877115 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
59877141 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
59877167 ATCA
1 ATCA
59877171 ATTTGTACCA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.35, C:0.27, G:0.07, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:59881550 original size:13 final size:13
Alignment explanation
Indices: 59881532--59881556 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
59881522 AAATAAATTC
59881532 AAAAATATTTATT
1 AAAAATATTTATT
59881545 AAAAATATTTAT
1 AAAAATATTTAT
59881557 GAGCCTATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
AAAAATATTTATT
Found at i:59881787 original size:21 final size:20
Alignment explanation
Indices: 59881773--59881842 Score: 56
Period size: 20 Copynumber: 3.5 Consensus size: 20
59881763 ATTATATATA
59881773 TATTATATTATATTATTGAT
1 TATTATATTATATTATTGAT
*
59881793 TATTATAATTAT-TAATTG-T
1 TATTAT-ATTATATTATTGAT
** *
59881812 TATGGTTTTATATTATT-AT
1 TATTATATTATATTATTGAT
*
59881831 TAGTACTATTAT
1 TATTA-TATTAT
59881843 TAAATAAATT
Statistics
Matches: 37, Mismatches: 9, Indels: 8
0.69 0.17 0.15
Matches are distributed among these distances:
18 4 0.11
19 12 0.32
20 16 0.43
21 5 0.14
ACGTcount: A:0.33, C:0.01, G:0.07, T:0.59
Consensus pattern (20 bp):
TATTATATTATATTATTGAT
Found at i:59882090 original size:23 final size:23
Alignment explanation
Indices: 59882064--59882108 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
59882054 GATAATAAAA
59882064 TACAAATGTAAAATATATATTTG
1 TACAAATGTAAAATATATATTTG
** * *
59882087 TACATTTGTAATATTTATATTT
1 TACAAATGTAAAATATATATTT
59882109 TTTATTAAAT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.40, C:0.04, G:0.07, T:0.49
Consensus pattern (23 bp):
TACAAATGTAAAATATATATTTG
Found at i:59883460 original size:45 final size:45
Alignment explanation
Indices: 59883410--59883498 Score: 144
Period size: 45 Copynumber: 2.0 Consensus size: 45
59883400 GTTACTCTTA
*
59883410 CCGTTACTGTTACCGATTC-GACACTTTGTGTGTCGAATACTGTTT
1 CCGTTACTGTTACAGATTCAG-CACTTTGTGTGTCGAATACTGTTT
*
59883455 CCGTTACTGTTACAGATTCAGCACTTTGTGTGTTGAATACTGTT
1 CCGTTACTGTTACAGATTCAGCACTTTGTGTGTCGAATACTGTT
59883499 ACTATTACTG
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
45 40 0.98
46 1 0.02
ACGTcount: A:0.19, C:0.20, G:0.20, T:0.40
Consensus pattern (45 bp):
CCGTTACTGTTACAGATTCAGCACTTTGTGTGTCGAATACTGTTT
Found at i:59883507 original size:45 final size:45
Alignment explanation
Indices: 59883402--59883508 Score: 135
Period size: 45 Copynumber: 2.4 Consensus size: 45
59883392 TGACTACTGT
* * *
59883402 TACTCTTACCGTTACTGTTACCGATTCGACACTTTGTGTGTCGAA
1 TACTGTTACCATTACTGTTACAGATTCGACACTTTGTGTGTCGAA
* * *
59883447 TACTGTTTCCGTTACTGTTACAGATTC-AGCACTTTGTGTGTTGAA
1 TACTGTTACCATTACTGTTACAGATTCGA-CACTTTGTGTGTCGAA
*
59883492 TACTGTTACTATTACTG
1 TACTGTTACCATTACTG
59883509 CTACTGCTAC
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 1 0.02
45 53 0.98
ACGTcount: A:0.21, C:0.21, G:0.18, T:0.41
Consensus pattern (45 bp):
TACTGTTACCATTACTGTTACAGATTCGACACTTTGTGTGTCGAA
Found at i:59890163 original size:21 final size:21
Alignment explanation
Indices: 59890121--59890205 Score: 64
Period size: 21 Copynumber: 4.1 Consensus size: 21
59890111 CAGAAGTCCG
* **
59890121 AAGA-CTAAACAGAAGCATAT
1 AAGAGCTAAACAGAAACCCAT
*
59890141 AAGTGCTAAACAGAAACCCAT
1 AAGAGCTAAACAGAAACCCAT
* * * * * *
59890162 AAGGGTTGAACGGAAGCTCAT
1 AAGAGCTAAACAGAAACCCAT
*
59890183 AAGAGCTAAACGGAAACCCAT
1 AAGAGCTAAACAGAAACCCAT
59890204 AA
1 AA
59890206 AGGTTAAACA
Statistics
Matches: 49, Mismatches: 15, Indels: 1
0.75 0.23 0.02
Matches are distributed among these distances:
20 3 0.06
21 46 0.94
ACGTcount: A:0.47, C:0.19, G:0.20, T:0.14
Consensus pattern (21 bp):
AAGAGCTAAACAGAAACCCAT
Found at i:59890185 original size:42 final size:41
Alignment explanation
Indices: 59890128--59890267 Score: 147
Period size: 42 Copynumber: 3.3 Consensus size: 41
59890118 CCGAAGACTA
*
59890128 AACAGAAGCAT-ATAAGTGCTAAACAGAAACCCATAAGGGTTG
1 AACAGAAGC-TCATAAGAGCTAAAC-GAAACCCATAAGGGTTG
* * *
59890170 AACGGAAGCTCATAAGAGCTAAACGGAAACCCATAAAGGTTA
1 AACAGAAGCTCATAAGAGCTAAAC-GAAACCCATAAGGGTTG
* * * *
59890212 AACAAAAGCTCAAAAGAGCTGAACGAAAACCCATTAGGGTTG
1 AACAGAAGCTCATAAGAGCTAAACG-AAACCCATAAGGGTTG
* *
59890254 AACTGAAACTCATA
1 AACAGAAGCTCATA
59890268 TAAGTTAAGC
Statistics
Matches: 80, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
41 2 0.03
42 78 0.98
ACGTcount: A:0.46, C:0.19, G:0.20, T:0.16
Consensus pattern (41 bp):
AACAGAAGCTCATAAGAGCTAAACGAAACCCATAAGGGTTG
Found at i:59890213 original size:21 final size:21
Alignment explanation
Indices: 59890147--59890214 Score: 66
Period size: 21 Copynumber: 3.2 Consensus size: 21
59890137 ATATAAGTGC
* *
59890147 TAAACAGAAACCCATAAGGGT
1 TAAACGGAAACCCATAAAGGT
* * * *
59890168 TGAACGGAAGCTCAT-AAGAGC
1 TAAACGGAAACCCATAAAG-GT
59890189 TAAACGGAAACCCATAAAGGT
1 TAAACGGAAACCCATAAAGGT
59890210 TAAAC
1 TAAAC
59890215 AAAAGCTCAA
Statistics
Matches: 35, Mismatches: 10, Indels: 4
0.71 0.20 0.08
Matches are distributed among these distances:
20 2 0.06
21 30 0.86
22 3 0.09
ACGTcount: A:0.46, C:0.19, G:0.21, T:0.15
Consensus pattern (21 bp):
TAAACGGAAACCCATAAAGGT
Found at i:59892726 original size:25 final size:25
Alignment explanation
Indices: 59892692--59892741 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
59892682 TACGAAAGAG
*
59892692 AGAGTTATGAACAAAGGATTTTCCA
1 AGAGTAATGAACAAAGGATTTTCCA
**
59892717 AGAGTAATGAATGAAGGATTTTCCA
1 AGAGTAATGAACAAAGGATTTTCCA
59892742 TACTTACGTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.40, C:0.10, G:0.22, T:0.28
Consensus pattern (25 bp):
AGAGTAATGAACAAAGGATTTTCCA
Found at i:59907272 original size:40 final size:40
Alignment explanation
Indices: 59907205--59907280 Score: 116
Period size: 40 Copynumber: 1.9 Consensus size: 40
59907195 TGGTACTCTA
* * *
59907205 TGGTGTGTAGGGTTGGATGGGTTGATTTTATCCCCATATT
1 TGGTGTGTAGGGATGGATGAGTCGATTTTATCCCCATATT
*
59907245 TGGTGTGTAGGGATGGGTGAGTCGATTTTATCCCCA
1 TGGTGTGTAGGGATGGATGAGTCGATTTTATCCCCA
59907281 CATGGTGTGT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.16, C:0.12, G:0.34, T:0.38
Consensus pattern (40 bp):
TGGTGTGTAGGGATGGATGAGTCGATTTTATCCCCATATT
Found at i:59908863 original size:13 final size:13
Alignment explanation
Indices: 59908845--59908896 Score: 52
Period size: 13 Copynumber: 3.8 Consensus size: 13
59908835 AATAGGATGA
59908845 TATTATTTTATTT
1 TATTATTTTATTT
59908858 TATTA-TTTATCTT
1 TATTATTTTAT-TT
59908871 TATCTTTATTTTATTT
1 TA---TTATTTTATTT
*
59908887 TATTAATTTA
1 TATTATTTTA
59908897 GGTTAGGCTA
Statistics
Matches: 33, Mismatches: 1, Indels: 10
0.75 0.02 0.23
Matches are distributed among these distances:
12 5 0.15
13 16 0.48
16 7 0.21
17 5 0.15
ACGTcount: A:0.25, C:0.04, G:0.00, T:0.71
Consensus pattern (13 bp):
TATTATTTTATTT
Found at i:59908874 original size:6 final size:5
Alignment explanation
Indices: 59908847--59908890 Score: 52
Period size: 5 Copynumber: 8.0 Consensus size: 5
59908837 TAGGATGATA
59908847 TTATT TTATT TTATTAT TTATCT TTATCT TTATT TTATT TTATT
1 TTATT TTATT TTA-T-T TTAT-T TTAT-T TTATT TTATT TTATT
59908891 AATTTAGGTT
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
5 19 0.53
6 13 0.36
7 4 0.11
ACGTcount: A:0.20, C:0.05, G:0.00, T:0.75
Consensus pattern (5 bp):
TTATT
Found at i:59914216 original size:161 final size:163
Alignment explanation
Indices: 59913831--59914305 Score: 527
Period size: 161 Copynumber: 2.9 Consensus size: 163
59913821 AAAATCAAAG
** * * *
59913831 TTTTC-TTTAAAAAATTTTACTACTTTTCTTAAAAATTAAAA-CTTTATTTTGAAATAGTTG--A
1 TTTTCTTTTAAAAAATAATACTACTTTTCTTAAAGATCAAAAGTTTTATTTTGAAATAGTTGAAA
* * *
59913892 AAAATATCAAAACTTTGTTTTAAAAATTAAAATTTTTTCCTTTAAAATGACTAAAAAAACAAATT
66 AAAAAATCAAAACTTTGTTTTAAAAATTAAAA--ATTTCCTTTAAAATGACTAAAAAAACATATT
* *
59913957 TTTATTTTTAAAAATCTAAACTTTCTCACTCTCTTTTT
129 TTTATTTTAAAAAATATAAAC--TCT-ACTCTCTTTTT
* * ** * **
59913995 TTTTCTTTTAAAAAATCACTATTTTTTTTATTAAAGATC-AAAGTTTTTATTTCAAAATAGTTGA
1 TTTTCTTTTAAAAAAT-AATACTACTTTTCTTAAAGATCAAAAG-TTTTATTTTGAAATAGTTG-
* * * * *
59914059 AAAAAAAAATCAAAACTTTATTTTAAAAATTTAAACTTTCCTTTAAAATGACTAAAATAATATAT
63 AAAAAAAAATCAAAACTTTGTTTTAAAAATTAAAAATTTCCTTTAAAATGACTAAAAAAACATAT
*
59914124 TTTTATTTTAAAAAA-ATATAAC-CT-TTCTCTTTTT
128 TTTTATTTTAAAAAATATA-AACTCTACTCTCTTTTT
59914158 TTTTCTTTTAAAAAA-AATACTACTTTTCTTAAAGATCAAAAGTTTTATTTTGAAATAGTTGAAA
1 TTTTCTTTTAAAAAATAATACTACTTTTCTTAAAGATCAAAAGTTTTATTTTGAAATAGTTGAAA
* * * *
59914222 ACAAAACCAAAAAATTTGTTTTAAAAATTAAAAATTTCCTTTAGAATGACTAAAAAAACATATTT
66 AAAAAATC-AAAACTTTGTTTTAAAAATTAAAAATTTCCTTTAAAATGACTAAAAAAACATATTT
* * *
59914287 TCATTTTTAAAAATCTAAA
130 TTATTTTAAAAAATATAAA
59914306 AGATCAAGCC
Statistics
Matches: 260, Mismatches: 40, Indels: 25
0.80 0.12 0.08
Matches are distributed among these distances:
160 9 0.03
161 96 0.37
162 6 0.02
163 24 0.09
164 5 0.02
165 15 0.06
166 14 0.05
167 18 0.07
168 43 0.17
170 30 0.12
ACGTcount: A:0.43, C:0.10, G:0.04, T:0.43
Consensus pattern (163 bp):
TTTTCTTTTAAAAAATAATACTACTTTTCTTAAAGATCAAAAGTTTTATTTTGAAATAGTTGAAA
AAAAAATCAAAACTTTGTTTTAAAAATTAAAAATTTCCTTTAAAATGACTAAAAAAACATATTTT
TATTTTAAAAAATATAAACTCTACTCTCTTTTT
Found at i:59914626 original size:3 final size:3
Alignment explanation
Indices: 59914620--59914670 Score: 57
Period size: 3 Copynumber: 16.7 Consensus size: 3
59914610 TAAAAAAAAG
* * * *
59914620 ATA ATA ATA ATA TTTA ATA ATA ATA ATA GTA GTA ATA ATG ATA ATA
1 ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
59914666 ATA AT
1 ATA AT
59914671 TTGAGCCCTT
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
3 39 0.95
4 2 0.05
ACGTcount: A:0.57, C:0.00, G:0.06, T:0.37
Consensus pattern (3 bp):
ATA
Found at i:59917361 original size:33 final size:33
Alignment explanation
Indices: 59917320--59917385 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
59917310 GATGATGTTC
59917320 GTTCTCACTCATTATTGTGAAAACTATCCCTTT
1 GTTCTCACTCATTATTGTGAAAACTATCCCTTT
59917353 GTTCTCACTCATTATTGTGAAAACTATCCCTTT
1 GTTCTCACTCATTATTGTGAAAACTATCCCTTT
59917386 ATAGAATCGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.24, C:0.24, G:0.09, T:0.42
Consensus pattern (33 bp):
GTTCTCACTCATTATTGTGAAAACTATCCCTTT
Found at i:59921834 original size:41 final size:42
Alignment explanation
Indices: 59921777--59921858 Score: 139
Period size: 42 Copynumber: 2.0 Consensus size: 42
59921767 CTTTTATTAC
59921777 ATTGATAATGA-TTTTTTTAAAAAAAATTATAAACTAGTTAT
1 ATTGATAATGATTTTTTTTAAAAAAAATTATAAACTAGTTAT
* *
59921818 ATTGATAATGCTTTTTTTTAAAAAAAATTATAAACTGGTTA
1 ATTGATAATGATTTTTTTTAAAAAAAATTATAAACTAGTTA
59921859 AGAGATTATT
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
41 10 0.26
42 28 0.74
ACGTcount: A:0.44, C:0.04, G:0.09, T:0.44
Consensus pattern (42 bp):
ATTGATAATGATTTTTTTTAAAAAAAATTATAAACTAGTTAT
Found at i:59922050 original size:17 final size:18
Alignment explanation
Indices: 59922028--59922063 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
59922018 CAAATATTAA
59922028 ATTATTTA-TATAATTTT
1 ATTATTTATTATAATTTT
*
59922045 ATTATTTATTATATTTTT
1 ATTATTTATTATAATTTT
59922063 A
1 A
59922064 AATTTTTTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (18 bp):
ATTATTTATTATAATTTT
Found at i:59925056 original size:24 final size:24
Alignment explanation
Indices: 59925041--59925107 Score: 125
Period size: 24 Copynumber: 2.8 Consensus size: 24
59925031 CGGATTTAAG
59925041 TGGCACTATGTGTGCGTATTTGTA
1 TGGCACTATGTGTGCGTATTTGTA
*
59925065 TGGCACTATGTGAGCGTATTTGTA
1 TGGCACTATGTGTGCGTATTTGTA
59925089 TGGCACTATGTGTGCGTAT
1 TGGCACTATGTGTGCGTAT
59925108 ATAATGGCTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.18, C:0.13, G:0.30, T:0.39
Consensus pattern (24 bp):
TGGCACTATGTGTGCGTATTTGTA
Found at i:59935571 original size:40 final size:40
Alignment explanation
Indices: 59935521--59935615 Score: 127
Period size: 40 Copynumber: 2.4 Consensus size: 40
59935511 AGAGCATTCT
* ** * * *
59935521 TTTCAATAGATTCAGTAGGTATGGCTTGAGAGCGCCTACG
1 TTTCAGTAGATTCAGTAGGTATGGCTCAAAAACGCATACG
*
59935561 TTTCAGTAGATTCAGTAGGTATGGCTCAAAAATGCATACG
1 TTTCAGTAGATTCAGTAGGTATGGCTCAAAAACGCATACG
59935601 TTTCAGTAGATTCAG
1 TTTCAGTAGATTCAG
59935616 AAGCTACTGC
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 48 1.00
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32
Consensus pattern (40 bp):
TTTCAGTAGATTCAGTAGGTATGGCTCAAAAACGCATACG
Found at i:59939722 original size:39 final size:39
Alignment explanation
Indices: 59939667--59939895 Score: 246
Period size: 39 Copynumber: 5.8 Consensus size: 39
59939657 AAAAATGGGA
*
59939667 TACTGATTCAACTGAAAGTATGCTCAATCGAGCCATACC
1 TACTGATTCTACTGAAAGTATGCTCAATCGAGCCATACC
* * * *
59939706 TACTGATTCTATTGAAAATATACTCAATCGAACCATACC
1 TACTGATTCTACTGAAAGTATGCTCAATCGAGCCATACC
* * **
59939745 CACTGATTCTATTGAAAGTATGCTCAATTAAGCCATACC
1 TACTGATTCTACTGAAAGTATGCTCAATCGAGCCATACC
* * *
59939784 TATTGATTCTACTAAAAGTATGCTCAATTGAAAGCCATACC
1 TACTGATTCTACTGAAAGTATGCTCAATCG--AGCCATACC
* * * * *
59939825 TACTGAATCTATTAAAAGTATGCTCAATCAAGCTATAGCC
1 TACTGATTCTACTGAAAGTATGCTCAATCGAGCCATA-CC
* *
59939865 -ACTGATTCTACTGAAAGT-TGCTGAAACGAGC
1 TACTGATTCTACTGAAAGTATGCTCAATCGAGC
59939896 ATTATCCACT
Statistics
Matches: 159, Mismatches: 28, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
38 10 0.06
39 113 0.71
40 2 0.01
41 34 0.21
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (39 bp):
TACTGATTCTACTGAAAGTATGCTCAATCGAGCCATACC
Found at i:59939850 original size:80 final size:78
Alignment explanation
Indices: 59939681--59939886 Score: 256
Period size: 80 Copynumber: 2.6 Consensus size: 78
59939671 GATTCAACTG
* * *
59939681 AAAGTATGCTCAATCGAGCCATACCTACTGATTCTATTGAAAA-TATACTCAATCGAACCATACC
1 AAAGTATGCTCAATCAAGCCATACCTACTGATTCTACT-AAAAGTATGCTCAATCGAACCATACC
* *
59939745 CACTGATTCTATTG
65 CACTGAATCTATTA
* * *
59939759 AAAGTATGCTCAATTAAGCCATACCTATTGATTCTACTAAAAGTATGCTCAATTGAAAGCCATAC
1 AAAGTATGCTCAATCAAGCCATACCTACTGATTCTACTAAAAGTATGCTCAATCG-AA-CCATAC
*
59939824 CTACTGAATCTATTA
64 CCACTGAATCTATTA
* *
59939839 AAAGTATGCTCAATCAAGCTATAGCC-ACTGATTCTACTGAAAGT-TGCT
1 AAAGTATGCTCAATCAAGCCATA-CCTACTGATTCTACTAAAAGTATGCT
59939887 GAAACGAGCA
Statistics
Matches: 111, Mismatches: 13, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
77 4 0.04
78 44 0.40
79 6 0.05
80 55 0.50
81 2 0.02
ACGTcount: A:0.35, C:0.22, G:0.13, T:0.30
Consensus pattern (78 bp):
AAAGTATGCTCAATCAAGCCATACCTACTGATTCTACTAAAAGTATGCTCAATCGAACCATACCC
ACTGAATCTATTA
Found at i:59939880 original size:119 final size:116
Alignment explanation
Indices: 59939670--59939886 Score: 303
Period size: 119 Copynumber: 1.8 Consensus size: 116
59939660 AATGGGATAC
* *
59939670 TGATTCAACTGAAAGTATGCTCAATCGAGCCATACCTACTGATTCTATTGAAAATATACTCAATC
1 TGATTCAACTAAAAGTATGCTCAATCGAGCCATACCTACTGAATCTATTGAAAATATACTCAATC
*
59939735 GAACCATACCCACTGATTCTATTGAAAGTATGCTCAATTAAGCCATACCTAT
66 GAACCATACCCACTGATTCTACTGAAAGT-TGCTCAATTAAGCCATACCTAT
* * *
59939787 TGATTCTACTAAAAGTATGCTCAATTGAAAGCCATACCTACTGAATCTATT-AAAAGTATGCTCA
1 TGATTCAACTAAAAGTATGCTCAATCG--AGCCATACCTACTGAATCTATTGAAAA-TATACTCA
* *
59939851 ATC-AAGCTATAGCCACTGATTCTACTGAAAGTTGCT
63 ATCGAA-CCATACCCACTGATTCTACTGAAAGTTGCT
59939887 GAAACGAGCA
Statistics
Matches: 88, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
117 24 0.27
118 10 0.11
119 54 0.61
ACGTcount: A:0.35, C:0.22, G:0.13, T:0.30
Consensus pattern (116 bp):
TGATTCAACTAAAAGTATGCTCAATCGAGCCATACCTACTGAATCTATTGAAAATATACTCAATC
GAACCATACCCACTGATTCTACTGAAAGTTGCTCAATTAAGCCATACCTAT
Found at i:59942084 original size:68 final size:68
Alignment explanation
Indices: 59941917--59942092 Score: 175
Period size: 68 Copynumber: 2.6 Consensus size: 68
59941907 TAGTACCACC
* * * *
59941917 CATGTGACCTAGC--CA-ATTTATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGTGACCTAGCTACACATATATCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAAT
59941979 CACA
65 CACA
** * *
59941983 CATGTGACCTAGCTACATTTATCTCTCCCGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGT
1 CATGTGACCTAGCTACACATATATCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGA
59942045 ATCACA
63 ATCACA
*
59942051 CATGTGACCTAGCTACTACATAGTATCTCGTAGCTTTCTTGT
1 CATGTGACCTAGCTAC-ACATA-TATCTCGTAGCTCTCTTGT
59942093 ACACATGATG
Statistics
Matches: 91, Mismatches: 11, Indels: 14
0.78 0.09 0.12
Matches are distributed among these distances:
66 13 0.14
68 38 0.42
69 8 0.09
70 6 0.07
71 26 0.29
ACGTcount: A:0.22, C:0.28, G:0.16, T:0.35
Consensus pattern (68 bp):
CATGTGACCTAGCTACACATATATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATC
ACA
Found at i:59950850 original size:43 final size:43
Alignment explanation
Indices: 59950768--59950915 Score: 140
Period size: 43 Copynumber: 3.5 Consensus size: 43
59950758 TGAGACATCA
* * * * *
59950768 TGTAAGACCGTGTCTGGGACACAGGCCTCGAT-TGAGATTTACG
1 TGTAAGACCATATCTGGGACAGAGGCATCGATAT-TGATTTACG
* * **
59950811 TATAAGACCATGTCTGGGACATTGGCATC-ATATCTGATTT-CG
1 TGTAAGACCATATCTGGGACAGAGGCATCGATAT-TGATTTACG
* * *
59950853 TGTAAGACCCTATCTGGGACAGAGGCATCGATATTGAATTACA
1 TGTAAGACCATATCTGGGACAGAGGCATCGATATTGATTTACG
*
59950896 TGTAAGACCACATCTGGGAC
1 TGTAAGACCATATCTGGGAC
59950916 GTCGGCATTG
Statistics
Matches: 86, Mismatches: 16, Indels: 6
0.80 0.15 0.06
Matches are distributed among these distances:
42 33 0.38
43 53 0.62
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (43 bp):
TGTAAGACCATATCTGGGACAGAGGCATCGATATTGATTTACG
Found at i:59950923 original size:85 final size:85
Alignment explanation
Indices: 59950768--59950923 Score: 190
Period size: 85 Copynumber: 1.8 Consensus size: 85
59950758 TGAGACATCA
* * * * **
59950768 TGTAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATTTACGTATAAGACCATGTCTGGGACAT
1 TGTAAGACCCTATCTGGGACACAGGCATCGATTGAGATTTACATATAAGACCACATCTGGGACAT
*
59950833 TGGCATCATATCTGATTTCG
66 CGGCATCATATCTGATTTCG
* *
59950853 TGTAAGACCCTATCTGGGACAGAGGCATCGATATTGA-A-TTACATGTAAGACCACATCTGGGAC
1 TGTAAGACCCTATCTGGGACACAGGCATCG--ATTGAGATTTACATATAAGACCACATCTGGGAC
*
59950916 GTCGGCAT
64 ATCGGCAT
59950924 TGTACTTGTT
Statistics
Matches: 59, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
85 53 0.90
86 1 0.02
87 5 0.08
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.27
Consensus pattern (85 bp):
TGTAAGACCCTATCTGGGACACAGGCATCGATTGAGATTTACATATAAGACCACATCTGGGACAT
CGGCATCATATCTGATTTCG
Found at i:59952155 original size:17 final size:18
Alignment explanation
Indices: 59952130--59952164 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
59952120 CTGATATCTC
59952130 TTTCAAAACTA-TCTCAT
1 TTTCAAAACTATTCTCAT
*
59952147 TTTCCAAACTATTCTCAT
1 TTTCAAAACTATTCTCAT
59952165 CTCTGTAAGC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.31, C:0.26, G:0.00, T:0.43
Consensus pattern (18 bp):
TTTCAAAACTATTCTCAT
Found at i:59954806 original size:45 final size:45
Alignment explanation
Indices: 59954682--59954809 Score: 143
Period size: 45 Copynumber: 2.8 Consensus size: 45
59954672 TTAGGAATTA
* * * *
59954682 AGAAATCCGAGCTCATTGAGTTGGTCCGAGTTAGTGATATATGTG
1 AGAAATCCAAGCTCGTTGAGTTGGTCCGAGTTCGTAATATATGTG
* * *
59954727 AGAAATCCGAACCT-GTTGAGTTGGTCCAAATTCGTAATATATGTG
1 AGAAATCC-AAGCTCGTTGAGTTGGTCCGAGTTCGTAATATATGTG
* *
59954772 A-AGCATCCAAGCTCGTTGAGTTGGTCCGGGTTCGTAAT
1 AGA-AATCCAAGCTCGTTGAGTTGGTCCGAGTTCGTAAT
59954810 GAATTTGATA
Statistics
Matches: 68, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
44 5 0.07
45 60 0.88
46 3 0.04
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (45 bp):
AGAAATCCAAGCTCGTTGAGTTGGTCCGAGTTCGTAATATATGTG
Found at i:59958673 original size:15 final size:15
Alignment explanation
Indices: 59958653--59958722 Score: 86
Period size: 15 Copynumber: 4.5 Consensus size: 15
59958643 ATTATGATAT
59958653 TGTATCTTGGATTTC
1 TGTATCTTGGATTTC
59958668 TGTATCTTGGATTTC
1 TGTATCTTGGATTTC
* * *
59958683 TTTGTCTTGGACTTC
1 TGTATCTTGGATTTC
*
59958698 TGTATCTTGGTTTTC
1 TGTATCTTGGATTTC
59958713 ATGTCATCTT
1 -TGT-ATCTT
59958723 TATTCTGTAA
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
15 38 0.83
16 3 0.07
17 5 0.11
ACGTcount: A:0.11, C:0.16, G:0.19, T:0.54
Consensus pattern (15 bp):
TGTATCTTGGATTTC
Found at i:59962072 original size:13 final size:13
Alignment explanation
Indices: 59962056--59962108 Score: 72
Period size: 13 Copynumber: 4.1 Consensus size: 13
59962046 TTTAAACCAA
59962056 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
*
59962069 ACTTCTCAAAAGC
1 ACTTTTCAAAAGC
*
59962082 ACTTTTTC-ACAGC
1 AC-TTTTCAAAAGC
59962095 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
59962108 A
1 A
59962109 TTGCCAAACT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
12 5 0.15
13 25 0.74
14 4 0.12
ACGTcount: A:0.36, C:0.26, G:0.08, T:0.30
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:59963023 original size:11 final size:11
Alignment explanation
Indices: 59963007--59963033 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
59962997 AGTGTTTTGG
59963007 GAAGTGTCTGA
1 GAAGTGTCTGA
59963018 GAAGTGTCTGA
1 GAAGTGTCTGA
59963029 GAAGT
1 GAAGT
59963034 CTGGGGTTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.30, C:0.07, G:0.37, T:0.26
Consensus pattern (11 bp):
GAAGTGTCTGA
Found at i:59967338 original size:9 final size:9
Alignment explanation
Indices: 59967324--59967358 Score: 70
Period size: 9 Copynumber: 3.9 Consensus size: 9
59967314 CTCAACCAAT
59967324 AACTTTCAG
1 AACTTTCAG
59967333 AACTTTCAG
1 AACTTTCAG
59967342 AACTTTCAG
1 AACTTTCAG
59967351 AACTTTCA
1 AACTTTCA
59967359 TATCACTTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.34, C:0.23, G:0.09, T:0.34
Consensus pattern (9 bp):
AACTTTCAG
Found at i:59981817 original size:13 final size:13
Alignment explanation
Indices: 59981801--59981826 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
59981791 ACTTTACGCA
59981801 AACAAATGGTTTT
1 AACAAATGGTTTT
59981814 AACAAATGGTTTT
1 AACAAATGGTTTT
59981827 TGGAAACACG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.15, T:0.38
Consensus pattern (13 bp):
AACAAATGGTTTT
Found at i:59983503 original size:39 final size:40
Alignment explanation
Indices: 59983460--59983558 Score: 110
Period size: 40 Copynumber: 2.5 Consensus size: 40
59983450 GCATGATTCC
* *
59983460 GGTGGATCATCTCTTATGAGCTTCT-GTTGGTGTGTTTCG
1 GGTGGATCAACTCTTATGAGCTTCTAGTTGGCGTGTTTCG
* * * *
59983499 GGTGGACCAACTCTTATGATCTTTTATTTGGCGTGTTTCG
1 GGTGGATCAACTCTTATGAGCTTCTAGTTGGCGTGTTTCG
* * *
59983539 GTTAGATCAACTCTGATGAG
1 GGTGGATCAACTCTTATGAG
59983559 TTTTTTTCTA
Statistics
Matches: 48, Mismatches: 11, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
39 21 0.44
40 27 0.56
ACGTcount: A:0.16, C:0.16, G:0.27, T:0.40
Consensus pattern (40 bp):
GGTGGATCAACTCTTATGAGCTTCTAGTTGGCGTGTTTCG
Found at i:59987972 original size:24 final size:26
Alignment explanation
Indices: 59987945--59987993 Score: 75
Period size: 24 Copynumber: 1.9 Consensus size: 26
59987935 TGTTCATGCA
59987945 ATATTAAAGC-ATTTAA-ATACAATT
1 ATATTAAAGCTATTTAACATACAATT
59987969 ATATTAAAGCTTATTTAACATACAA
1 ATATTAAAGC-TATTTAACATACAA
59987994 ACTTACATCG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 10 0.45
26 6 0.27
27 6 0.27
ACGTcount: A:0.49, C:0.10, G:0.04, T:0.37
Consensus pattern (26 bp):
ATATTAAAGCTATTTAACATACAATT
Found at i:59991339 original size:39 final size:39
Alignment explanation
Indices: 59991287--59991676 Score: 428
Period size: 39 Copynumber: 10.0 Consensus size: 39
59991277 AATGGGATAT
* *
59991287 TGATTCAACTGAAAGTATGCTCAATCGAGCCATACCTAT
1 TGATTCTACTGAAAGTATGCTCAATCGAGCCATACCTAC
* * *
59991326 TGATTCGATTGAAAGTATGCTCCATCGAGCCATACAC-AC
1 TGATTCTACTGAAAGTATGCTCAATCGAGCCATAC-CTAC
* *
59991365 T-ATTCTATTAAAAGTATGCTCAATCGAGCCATACCTAC
1 TGATTCTACTGAAAGTATGCTCAATCGAGCCATACCTAC
* * *
59991403 TAATTCTACTAAAAGTATGCTCAATCGACCCATACCTAC
1 TGATTCTACTGAAAGTATGCTCAATCGAGCCATACCTAC
* *
59991442 TAAATCTACTGAAAGTATGCTCAATCGAGCCATACCTAC
1 TGATTCTACTGAAAGTATGCTCAATCGAGCCATACCTAC
** * * * * *
59991481 AAAATCTGCTCAAAGTATGCTCAATCAAGCTATAGCC-AC
1 TGATTCTACTGAAAGTATGCTCAATCGAGCCATA-CCTAC
* * *
59991520 TGATTTTACTAAAAGTATGCTCAATTGAGCCATACCTAC
1 TGATTCTACTGAAAGTATGCTCAATCGAGCCATACCTAC
* *
59991559 TGGTTCTACTGAAAGTATGCTCAATCAAGCCATACCTAC
1 TGATTCTACTGAAAGTATGCTCAATCGAGCCATACCTAC
** * * * *
59991598 AAAATCTGCTGAAAGTATGCTCAATCAAGCTATAGCC-AC
1 TGATTCTACTGAAAGTATGCTCAATCGAGCCATA-CCTAC
* * *
59991637 TGATTTTACTAAAAGTATGCTCAATTGAGCCATACCTAC
1 TGATTCTACTGAAAGTATGCTCAATCGAGCCATACCTAC
59991676 T
1 T
59991677 ATATGCTCAA
Statistics
Matches: 298, Mismatches: 46, Indels: 14
0.83 0.13 0.04
Matches are distributed among these distances:
37 1 0.00
38 37 0.12
39 255 0.86
40 5 0.02
ACGTcount: A:0.34, C:0.24, G:0.13, T:0.28
Consensus pattern (39 bp):
TGATTCTACTGAAAGTATGCTCAATCGAGCCATACCTAC
Found at i:59991553 original size:117 final size:117
Alignment explanation
Indices: 59991298--59991677 Score: 523
Period size: 117 Copynumber: 3.3 Consensus size: 117
59991288 GATTCAACTG
* * * * *
59991298 AAAGTATGCTCAATCGAGCCATACCTATTGATTCGATTGAAAGTATGCTCCATCGAGCCATA-C-
1 AAAGTATGCTCAATCGAGCCATACCTACTAATTCTACTGAAAGTATGCTCAATCGAGCCATACCT
* * ** * * * *
59991361 ACACTATTCTATTAAAAGTATGCTCAATCGAGCCATA-CCTACTAATTCTACTA
66 ACA-AAATCTGCTAAAAGTATGCTCAATCAAGCTATAGCC-ACTGATTTTACTA
* *
59991414 AAAGTATGCTCAATCGACCCATACCTACTAAATCTACTGAAAGTATGCTCAATCGAGCCATACCT
1 AAAGTATGCTCAATCGAGCCATACCTACTAATTCTACTGAAAGTATGCTCAATCGAGCCATACCT
*
59991479 ACAAAATCTGCTCAAAGTATGCTCAATCAAGCTATAGCCACTGATTTTACTA
66 ACAAAATCTGCTAAAAGTATGCTCAATCAAGCTATAGCCACTGATTTTACTA
* ** *
59991531 AAAGTATGCTCAATTGAGCCATACCTACTGGTTCTACTGAAAGTATGCTCAATCAAGCCATACCT
1 AAAGTATGCTCAATCGAGCCATACCTACTAATTCTACTGAAAGTATGCTCAATCGAGCCATACCT
*
59991596 ACAAAATCTGCTGAAAGTATGCTCAATCAAGCTATAGCCACTGATTTTACTA
66 ACAAAATCTGCTAAAAGTATGCTCAATCAAGCTATAGCCACTGATTTTACTA
*
59991648 AAAGTATGCTCAATTGAGCCATACCTACTA
1 AAAGTATGCTCAATCGAGCCATACCTACTA
59991678 TATGCTCAAT
Statistics
Matches: 237, Mismatches: 24, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
116 55 0.23
117 177 0.75
118 5 0.02
ACGTcount: A:0.35, C:0.24, G:0.13, T:0.28
Consensus pattern (117 bp):
AAAGTATGCTCAATCGAGCCATACCTACTAATTCTACTGAAAGTATGCTCAATCGAGCCATACCT
ACAAAATCTGCTAAAAGTATGCTCAATCAAGCTATAGCCACTGATTTTACTA
Found at i:59991694 original size:65 final size:65
Alignment explanation
Indices: 59991613--59991741 Score: 258
Period size: 65 Copynumber: 2.0 Consensus size: 65
59991603 CTGCTGAAAG
59991613 TATGCTCAATCAAGCTATAGCCACTGATTTTACTAAAAGTATGCTCAATTGAGCCATACCTACTA
1 TATGCTCAATCAAGCTATAGCCACTGATTTTACTAAAAGTATGCTCAATTGAGCCATACCTACTA
59991678 TATGCTCAATCAAGCTATAGCCACTGATTTTACTAAAAGTATGCTCAATTGAGCCATACCTACT
1 TATGCTCAATCAAGCTATAGCCACTGATTTTACTAAAAGTATGCTCAATTGAGCCATACCTACT
59991742 GATTCTATTG
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 64 1.00
ACGTcount: A:0.33, C:0.23, G:0.12, T:0.31
Consensus pattern (65 bp):
TATGCTCAATCAAGCTATAGCCACTGATTTTACTAAAAGTATGCTCAATTGAGCCATACCTACTA
Found at i:59991723 original size:39 final size:38
Alignment explanation
Indices: 59991678--59991802 Score: 144
Period size: 39 Copynumber: 3.2 Consensus size: 38
59991668 ATACCTACTA
* *
59991678 TATGCTCAATCAAGCTATAGCCACTGATTTTACTAAAAG
1 TATGCTCAATCAAGCCATA-CCACTGATTCTACTAAAAG
** * *
59991717 TATGCTCAATTGAGCCATACCTACTGATTCTATTGAAAG
1 TATGCTCAATCAAGCCATACC-ACTGATTCTACTAAAAG
* *
59991756 TATGCTCAATCAAGCGATACCCACTGGTTCTACTAAAAG
1 TATGCTCAATCAAGCCATA-CCACTGATTCTACTAAAAG
59991795 T-TGCTCAA
1 TATGCTCAA
59991803 ATGTGCATTA
Statistics
Matches: 72, Mismatches: 12, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
38 9 0.12
39 61 0.85
40 2 0.03
ACGTcount: A:0.33, C:0.22, G:0.14, T:0.30
Consensus pattern (38 bp):
TATGCTCAATCAAGCCATACCACTGATTCTACTAAAAG
Found at i:59994110 original size:15 final size:15
Alignment explanation
Indices: 59994090--59994119 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
59994080 AATATGGAAA
59994090 ATATGTTTTGGATTG
1 ATATGTTTTGGATTG
*
59994105 ATATGTTTTGTATTG
1 ATATGTTTTGGATTG
59994120 GAATTTTTGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.20, C:0.00, G:0.23, T:0.57
Consensus pattern (15 bp):
ATATGTTTTGGATTG
Found at i:59994783 original size:45 final size:43
Alignment explanation
Indices: 59994707--59994828 Score: 124
Period size: 41 Copynumber: 2.8 Consensus size: 43
59994697 GATATGTGTT
* * **
59994707 TTCGTGTAAGACCACGTTTGGGATGTTGGCATCGATGTATGTGA
1 TTCGTGTAAGACCATGTCTGGGA-CATGGCATCGATGTATGTGA
*
59994751 TTACGTGTAAGACCATGTCTGGGACATCGGCATC---GTATTTGA
1 TT-CGTGTAAGACCATGTCTGGGACAT-GGCATCGATGTATGTGA
* *
59994793 TTCTTGTAAGACCCTGTCTGGGACAGTGGCATCGAT
1 TTCGTGTAAGACCATGTCTGGGACA-TGGCATCGAT
59994829 ATGAGATAGC
Statistics
Matches: 65, Mismatches: 7, Indels: 12
0.77 0.08 0.14
Matches are distributed among these distances:
41 27 0.42
42 10 0.15
44 3 0.05
45 25 0.38
ACGTcount: A:0.21, C:0.18, G:0.29, T:0.32
Consensus pattern (43 bp):
TTCGTGTAAGACCATGTCTGGGACATGGCATCGATGTATGTGA
Found at i:59998817 original size:47 final size:47
Alignment explanation
Indices: 59998754--59999329 Score: 902
Period size: 47 Copynumber: 12.3 Consensus size: 47
59998744 CCCTTCGGGA
* * *
59998754 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * * * *
59998801 CTTATCACATATATACACCTTCACATCCATCACATCGGCCTTTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
59998848 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
59998895 CTTATCACATATATACACTTTCACATTCATCATATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
59998942 CTTGTCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * * *
59998989 TTTATCTCATATATACACTTTCACATTCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
59999036 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * *
59999083 CTTATCACATATATACACTTTCACATTCATCACTTTGTCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
59999130 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGG-
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
59999176 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
59999223 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
59999270 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
59999317 CTTATCACATATA
1 CTTATCACATATA
59999330 CATATCTTGT
Statistics
Matches: 487, Mismatches: 41, Indels: 2
0.92 0.08 0.00
Matches are distributed among these distances:
46 45 0.09
47 442 0.91
ACGTcount: A:0.28, C:0.29, G:0.08, T:0.35
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
Found at i:59999279 original size:22 final size:22
Alignment explanation
Indices: 59999251--59999326 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
59999241 TTTCACATTC
59999251 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
59999273 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
59999297 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
59999320 ATCACAT
1 ATCACAT
59999327 ATACATATCT
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 18 0.46
23 5 0.13
24 5 0.13
25 11 0.28
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:60003429 original size:42 final size:42
Alignment explanation
Indices: 60003383--60003536 Score: 166
Period size: 42 Copynumber: 3.6 Consensus size: 42
60003373 TGAGTTCACG
** ** **
60003383 TGTAAGACCATATCTGGGATATGAAATCCTTATGAGATTTCA
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGATACCA
* * *
60003425 TGTAAGACCATGTCTGGGACATGGCATCGATATGAGA-ACCG
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGATACCA
* * * *
60003466 TGTGAGACCATAGCTGGGCTATTGGCATCGATATGAGATCCCA
1 TGTAAGACCATATCTGGGATA-TGGCATCGATATGAGATACCA
60003509 TGTAAGACCATATCTTGGGATATGGCAT
1 TGTAAGACCATATC-TGGGATATGGCAT
60003537 TGGTATGGTA
Statistics
Matches: 90, Mismatches: 19, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
41 17 0.19
42 47 0.52
43 20 0.22
44 6 0.07
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCGATATGAGATACCA
Found at i:60003737 original size:11 final size:11
Alignment explanation
Indices: 60003721--60003745 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
60003711 TCACTATGGG
60003721 GATGACCTTGT
1 GATGACCTTGT
60003732 GATGACCTTGT
1 GATGACCTTGT
60003743 GAT
1 GAT
60003746 TATTGGTCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.20, C:0.16, G:0.28, T:0.36
Consensus pattern (11 bp):
GATGACCTTGT
Found at i:60005869 original size:42 final size:42
Alignment explanation
Indices: 60005806--60005930 Score: 155
Period size: 42 Copynumber: 3.0 Consensus size: 42
60005796 TGACATTAAG
*
60005806 GTTATGAG-TTTACATGTAAGACCATATCTAGGATATGGCATC
1 GTTATGAGATTT-CATGTAAGACCATATCTGGGATATGGCATC
* * * *
60005848 GTTATGAGATTTCGTGCAAGACCATGTCTGGGACATGGCATC
1 GTTATGAGATTTCATGTAAGACCATATCTGGGATATGGCATC
* *
60005890 GATATGAGA-TCCTATGTAAGACCATATCTGGGATATGGCAT
1 GTTATGAGATTTC-ATGTAAGACCATATCTGGGATATGGCAT
60005931 TGGTATGGTA
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
41 2 0.03
42 65 0.93
43 3 0.04
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (42 bp):
GTTATGAGATTTCATGTAAGACCATATCTGGGATATGGCATC
Found at i:60006131 original size:11 final size:11
Alignment explanation
Indices: 60006115--60006139 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
60006105 TCACTATGGG
60006115 GATGACCTTGT
1 GATGACCTTGT
60006126 GATGACCTTGT
1 GATGACCTTGT
60006137 GAT
1 GAT
60006140 TATTGGCCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.20, C:0.16, G:0.28, T:0.36
Consensus pattern (11 bp):
GATGACCTTGT
Found at i:60009066 original size:37 final size:37
Alignment explanation
Indices: 60009011--60009092 Score: 137
Period size: 37 Copynumber: 2.2 Consensus size: 37
60009001 CTTGAAATTG
60009011 CCATGGCATTTCTATTGGCAATATATCCCACCATTTA
1 CCATGGCATTTCTATTGGCAATATATCCCACCATTTA
* * *
60009048 CCATGGCATTTCTGTTGGCAATATATTCCACCATTTT
1 CCATGGCATTTCTATTGGCAATATATCCCACCATTTA
60009085 CCATGGCA
1 CCATGGCA
60009093 ATGTTTCACC
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 42 1.00
ACGTcount: A:0.24, C:0.27, G:0.13, T:0.35
Consensus pattern (37 bp):
CCATGGCATTTCTATTGGCAATATATCCCACCATTTA
Found at i:60015100 original size:29 final size:29
Alignment explanation
Indices: 60015066--60015168 Score: 145
Period size: 29 Copynumber: 3.6 Consensus size: 29
60015056 TCATCAACCA
60015066 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGTACTTTAAACT
60015095 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGTACTTTAAACT
* * **
60015124 CGCACACTTAGTACCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGTACTTT-AAACT
*
60015153 CGCACACCTAGTGCCA
1 CGCACACTTAGTGCCA
60015169 ATCTCACAAC
Statistics
Matches: 67, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
28 3 0.04
29 64 0.96
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGTACTTTAAACT
Found at i:60019489 original size:17 final size:17
Alignment explanation
Indices: 60019452--60019491 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
60019442 TTCCTGACCA
* *
60019452 TTCTTCCTTTTTCTTTT
1 TTCTTCCTTTTTCTCTC
*
60019469 TTCTTCTTTTTTCTCTC
1 TTCTTCCTTTTTCTCTC
60019486 TTCTTC
1 TTCTTC
60019492 AACTTCTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (17 bp):
TTCTTCCTTTTTCTCTC
Found at i:60020762 original size:27 final size:27
Alignment explanation
Indices: 60020722--60020790 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 27
60020712 AGGAAGCGTC
*
60020722 CTGGTGGCTATGCCACA-ATTATCTGAT
1 CTGGTGGCTCTGCCACATA-TATCTGAT
*
60020749 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGAT
*
60020776 CTAGTGGCTCTGCCA
1 CTGGTGGCTCTGCCA
60020791 TGCTTATCTA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
27 37 0.97
28 1 0.03
ACGTcount: A:0.17, C:0.26, G:0.23, T:0.33
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATATATCTGAT
Found at i:60028585 original size:27 final size:26
Alignment explanation
Indices: 60028545--60028632 Score: 104
Period size: 27 Copynumber: 3.2 Consensus size: 26
60028535 AGGAAGCGTC
*
60028545 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
60028572 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
* *
60028599 TTGGTGGCTCTGCCACGATTATTTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
60028627 CTGGTG
1 CTGGTG
60028633 ACTGTGTAAC
Statistics
Matches: 52, Mismatches: 6, Indels: 5
0.83 0.10 0.08
Matches are distributed among these distances:
26 2 0.04
27 42 0.81
28 8 0.15
ACGTcount: A:0.16, C:0.22, G:0.25, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:60028651 original size:54 final size:54
Alignment explanation
Indices: 60028546--60028656 Score: 134
Period size: 54 Copynumber: 2.1 Consensus size: 54
60028536 GGAAGCGTCC
* *
60028546 TGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTT
1 TGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCAACATATATCTGTTT
* * * * * *
60028600 TGGTGGCTCTGCCACGATTATTTGTATCTGGTGACTGTGTAACAT-TTTCTGTTT
1 TGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCAACATATATCTGTTT
60028654 TGG
1 TGG
60028657 CAGCCATATT
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
54 32 0.67
55 16 0.33
ACGTcount: A:0.16, C:0.19, G:0.24, T:0.41
Consensus pattern (54 bp):
TGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCAACATATATCTGTTT
Found at i:60041675 original size:28 final size:28
Alignment explanation
Indices: 60041638--60041744 Score: 151
Period size: 28 Copynumber: 3.8 Consensus size: 28
60041628 GCAATCAAAT
*
60041638 ATGGTACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
60041666 ATGGCACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
* * *
60041694 ATGGCACTTAGTGTGCGAGATATTGAAA
1 ATGGCACTTAGTGTACGAAATATTGAGA
* * *
60041722 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTACGAAATAT
60041745 CGAATGATTC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 72 1.00
ACGTcount: A:0.36, C:0.10, G:0.24, T:0.30
Consensus pattern (28 bp):
ATGGCACTTAGTGTACGAAATATTGAGA
Found at i:60045004 original size:28 final size:28
Alignment explanation
Indices: 60044966--60045067 Score: 159
Period size: 28 Copynumber: 3.6 Consensus size: 28
60044956 GAATCATTCG
*
60044966 ATATTTTGCACACTAAGTGTCATTCTCA
1 ATATTTCGCACACTAAGTGTCATTCTCA
*
60044994 ATATCTCGCACACTAAGTGTCATTCTCA
1 ATATTTCGCACACTAAGTGTCATTCTCA
* *
60045022 ATATTTCGTACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGTCATTCTCA
*
60045050 ATATTTCGTACACTAAGT
1 ATATTTCGCACACTAAGT
60045068 ACCATATTTG
Statistics
Matches: 69, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 69 1.00
ACGTcount: A:0.29, C:0.24, G:0.11, T:0.36
Consensus pattern (28 bp):
ATATTTCGCACACTAAGTGTCATTCTCA
Found at i:60052006 original size:27 final size:26
Alignment explanation
Indices: 60051958--60052017 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
60051948 GCGAGGCTGC
*
60051958 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
60051985 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
60052011 CATATAT
1 CAGATAT
60052018 ATATATGTGG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.23
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:60057788 original size:45 final size:45
Alignment explanation
Indices: 60057724--60057945 Score: 301
Period size: 45 Copynumber: 5.0 Consensus size: 45
60057714 ATTATCGTAC
60057724 GACACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
1 GACACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
* *
60057769 GACACTATTCGGTCCTTTGAGCCTAGCAAGCTATAATGCCGGTGA
1 GACACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
* *
60057814 GATACTATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCGGTGA
1 GACACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
*
60057859 GATACTATTCGGG-CTTTCGAGCCTAGCAGGCTATAATGCCGGTGA
1 GACACTATTCGGGCCTTT-GAGCCTAGCAGGCTATAATGCCGGTGA
** * * *
60057904 -A-AGGATATCGGGCC-TCGAGCCTAGCAGGC-AAAATGCCAGTGA
1 GACACTAT-TCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
60057946 ATGAATTCGG
Statistics
Matches: 162, Mismatches: 12, Indels: 9
0.89 0.07 0.05
Matches are distributed among these distances:
42 11 0.07
43 16 0.10
44 11 0.07
45 124 0.77
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (45 bp):
GACACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
Found at i:60063954 original size:40 final size:39
Alignment explanation
Indices: 60063869--60063954 Score: 91
Period size: 40 Copynumber: 2.2 Consensus size: 39
60063859 TAATGACTTA
** *
60063869 TCGGCTAAAATGGCACTTAGTGTCCGGTTCGAAATAGTT
1 TCGGCTAAAATGGCACTTAGTGTCCAATTCGAAATAGCT
* * * * *
60063908 TTGGCTAAAAGTGGCACTTGGTGTGCAATTTGAGATAGCT
1 TCGGCTAAAA-TGGCACTTAGTGTCCAATTCGAAATAGCT
60063948 TCGGCTA
1 TCGGCTA
60063955 TATAGATATA
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
39 9 0.24
40 28 0.76
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.31
Consensus pattern (39 bp):
TCGGCTAAAATGGCACTTAGTGTCCAATTCGAAATAGCT
Found at i:60064022 original size:28 final size:29
Alignment explanation
Indices: 60063965--60064039 Score: 75
Period size: 28 Copynumber: 2.7 Consensus size: 29
60063955 TATAGATATA
* * * *
60063965 AATGGCACTTAGTGTG-CAAAGTATCGAG
1 AATGACACTTAGTGTGTGAAAGCATCCAG
60063993 AATGACACTTAGTGTGTGAAA-CATCCAG
1 AATGACACTTAGTGTGTGAAAGCATCCAG
*
60064021 AAT-AGCACTTAGCGTGTGA
1 AATGA-CACTTAGTGTGTGA
60064040 GGTATCGAAT
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
27 1 0.03
28 36 0.90
29 3 0.08
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.25
Consensus pattern (29 bp):
AATGACACTTAGTGTGTGAAAGCATCCAG
Found at i:60066637 original size:27 final size:26
Alignment explanation
Indices: 60066589--60066639 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 26
60066579 ATGTTTAAAA
*
60066589 ACTTTTTATTTATTATTTTTATTTTC
1 ACTTTTTATTTATTATTCTTATTTTC
60066615 ACTTTTATATTTATT-TATCTTATTT
1 ACTTTT-TATTTATTAT-TCTTATTT
60066640 AAGTACTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.22, C:0.08, G:0.00, T:0.71
Consensus pattern (26 bp):
ACTTTTTATTTATTATTCTTATTTTC
Found at i:60082247 original size:18 final size:18
Alignment explanation
Indices: 60082224--60082296 Score: 110
Period size: 18 Copynumber: 4.1 Consensus size: 18
60082214 CTTGGCACAT
60082224 TGCAGTAACAGTAAACAG
1 TGCAGTAACAGTAAACAG
*
60082242 TGCAGTAACAGTAATCAG
1 TGCAGTAACAGTAAACAG
*
60082260 TGTAGTAACAGTAAACAG
1 TGCAGTAACAGTAAACAG
* *
60082278 TGCAGTAATAGTAAGCAG
1 TGCAGTAACAGTAAACAG
60082296 T
1 T
60082297 ATGCAAGTCC
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 49 1.00
ACGTcount: A:0.41, C:0.14, G:0.23, T:0.22
Consensus pattern (18 bp):
TGCAGTAACAGTAAACAG
Found at i:60082274 original size:36 final size:36
Alignment explanation
Indices: 60082227--60082296 Score: 122
Period size: 36 Copynumber: 1.9 Consensus size: 36
60082217 GGCACATTGC
*
60082227 AGTAACAGTAAACAGTGCAGTAACAGTAATCAGTGT
1 AGTAACAGTAAACAGTGCAGTAACAGTAAGCAGTGT
*
60082263 AGTAACAGTAAACAGTGCAGTAATAGTAAGCAGT
1 AGTAACAGTAAACAGTGCAGTAACAGTAAGCAGT
60082297 ATGCAAGTCC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.43, C:0.13, G:0.23, T:0.21
Consensus pattern (36 bp):
AGTAACAGTAAACAGTGCAGTAACAGTAAGCAGTGT
Found at i:60082667 original size:27 final size:27
Alignment explanation
Indices: 60082632--60082836 Score: 198
Period size: 27 Copynumber: 7.6 Consensus size: 27
60082622 ACTTAGGGGC
** *
60082632 AAAACAGTCATCCTACCACATAAGGGT
1 AAAACAGTCATTTTACCACATAAGGGA
* *
60082659 AAAATAGTCATTTTACCTCATAAGGGA
1 AAAACAGTCATTTTACCACATAAGGGA
* * * *
60082686 AAGACCGTCATTTTACCATATAAGGGC
1 AAAACAGTCATTTTACCACATAAGGGA
* * * *
60082713 AAAACTGTCAATTTAACACATAAGGGC
1 AAAACAGTCATTTTACCACATAAGGGA
* *
60082740 AAAACAATCATTTT-GCACATAAGGGA
1 AAAACAGTCATTTTACCACATAAGGGA
* *
60082766 AAAACCA-TCATTTTATCACATAAGGGT
1 AAAA-CAGTCATTTTACCACATAAGGGA
** *
60082793 AAAATTGTCATTTTAACACATAAGGGA
1 AAAACAGTCATTTTACCACATAAGGGA
*
60082820 AAAATAGTCATTTTACC
1 AAAACAGTCATTTTACC
60082837 TTACAGGGGT
Statistics
Matches: 146, Mismatches: 29, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
26 21 0.14
27 125 0.86
ACGTcount: A:0.41, C:0.18, G:0.14, T:0.26
Consensus pattern (27 bp):
AAAACAGTCATTTTACCACATAAGGGA
Found at i:60082791 original size:80 final size:81
Alignment explanation
Indices: 60082648--60082836 Score: 254
Period size: 80 Copynumber: 2.3 Consensus size: 81
60082638 GTCATCCTAC
* * * * *
60082648 CACATAAGGGTAAAATAGTCATTTTACCTCATAAGGGAAAGACCGTCATTTTACCATATAAGGGC
1 CACATAAGGGAAAAATAGTCATTTTACCACATAAGGGAAAAACCATCATTTTACCACATAAGGGC
60082713 AAAACTGTCAATTTAA
66 AAAACTGTCAATTTAA
* * * * * *
60082729 CACATAAGGGCAAAACAATCATTTT-GCACATAAGGGAAAAACCATCATTTTATCACATAAGGGT
1 CACATAAGGGAAAAATAGTCATTTTACCACATAAGGGAAAAACCATCATTTTACCACATAAGGGC
* *
60082793 AAAATTGTCATTTTAA
66 AAAACTGTCAATTTAA
60082809 CACATAAGGGAAAAATAGTCATTTTACC
1 CACATAAGGGAAAAATAGTCATTTTACC
60082837 TTACAGGGGT
Statistics
Matches: 91, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
80 68 0.75
81 23 0.25
ACGTcount: A:0.41, C:0.17, G:0.15, T:0.27
Consensus pattern (81 bp):
CACATAAGGGAAAAATAGTCATTTTACCACATAAGGGAAAAACCATCATTTTACCACATAAGGGC
AAAACTGTCAATTTAA
Found at i:60082855 original size:27 final size:27
Alignment explanation
Indices: 60082825--60083047 Score: 297
Period size: 27 Copynumber: 8.3 Consensus size: 27
60082815 AGGGAAAAAT
* ** *
60082825 AGTCATTTTACCTTACAGGGGTATTAC
1 AGTCATTTTACCCTATGGGGGTATTTC
*
60082852 AGTCATTTTACCCTATGGAGGTATTTC
1 AGTCATTTTACCCTATGGGGGTATTTC
* *
60082879 -GATAATTTTACCTTATGGGGGTATTTC
1 AG-TCATTTTACCCTATGGGGGTATTTC
*
60082906 TGTCATTTTACCCTATGGGGGTA-TTC
1 AGTCATTTTACCCTATGGGGGTATTTC
* *
60082932 TGATCATTTTACCCTATAGGGGTATTTC
1 AG-TCATTTTACCCTATGGGGGTATTTC
*
60082960 AGTCATTTTACCCTATGAGGGTATTTC
1 AGTCATTTTACCCTATGGGGGTATTTC
*
60082987 AGTCATTTTACCCTATGGGGATATTTC
1 AGTCATTTTACCCTATGGGGGTATTTC
*
60083014 AGTTATTTTACCCTATGGGGGTATTTC
1 AGTCATTTTACCCTATGGGGGTATTTC
60083041 AGTCATT
1 AGTCATT
60083048 ATTCTGTTCC
Statistics
Matches: 173, Mismatches: 19, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
26 6 0.03
27 162 0.94
28 5 0.03
ACGTcount: A:0.22, C:0.17, G:0.20, T:0.42
Consensus pattern (27 bp):
AGTCATTTTACCCTATGGGGGTATTTC
Found at i:60087279 original size:49 final size:49
Alignment explanation
Indices: 60087223--60087401 Score: 259
Period size: 49 Copynumber: 3.6 Consensus size: 49
60087213 CTGGTACGCA
* *
60087223 TAGTAGCCTGCACTTAGTACTTCACATGTGACCAATTATCCAGTATACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCAGTACACG
* ** * *
60087272 TAGTAGCCTGCACTTAGTACTACACATGTGATCGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-CCAA-TTATCCAGTACACG
* *
60087323 TAGTAGCTTGCACTTAGTACTACACATGCGACCAATTATCCAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCAGTACACG
60087372 TAGTAGCCTGCACTTAGTACTACACATGTG
1 TAGTAGCCTGCACTTAGTACTACACATGTG
60087402 GCCTCACAAT
Statistics
Matches: 112, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
49 68 0.61
50 6 0.05
51 38 0.34
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.28
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCAGTACACG
Found at i:60087350 original size:100 final size:100
Alignment explanation
Indices: 60087210--60087401 Score: 339
Period size: 100 Copynumber: 1.9 Consensus size: 100
60087200 TAGACAAGGC
* * * *
60087210 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTTCACATGTGACCAATTATCCAGTATACGTAG
1 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCAGTACACGTAG
60087275 TAGCCTGCACTTAGTACTACACATGTGATCGAAGT
66 TAGCCTGCACTTAGTACTACACATGTGATCGAAGT
*
60087310 TATCGGGTACGCATAGTAGCTTGCACTTAGTACTACACATGCGACCAATTATCCAGTACACGTAG
1 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCAGTACACGTAG
60087375 TAGCCTGCACTTAGTACTACACATGTG
66 TAGCCTGCACTTAGTACTACACATGTG
60087402 GCCTCACAAT
Statistics
Matches: 87, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
100 87 1.00
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (100 bp):
TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCAGTACACGTAG
TAGCCTGCACTTAGTACTACACATGTGATCGAAGT
Found at i:60087679 original size:27 final size:27
Alignment explanation
Indices: 60087649--60087702 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
60087639 TCATACAACC
* * *
60087649 CATGAAATAGTAATTTATCATTCAATT
1 CATGAAACAATAATTTACCATTCAATT
* *
60087676 CATGTAACAATAATTTGCCATTCAATT
1 CATGAAACAATAATTTACCATTCAATT
60087703 TCACATGACA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGAAACAATAATTTACCATTCAATT
Found at i:60091218 original size:21 final size:21
Alignment explanation
Indices: 60091203--60091249 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
60091193 CACACGCTCG
60091203 TGTGAAAGGGCAACACGCCTA
1 TGTGAAAGGGCAACACGCCTA
* * *
60091224 TGTGAAAGGGCACCACCCCCA
1 TGTGAAAGGGCAACACGCCTA
60091245 TGTGA
1 TGTGA
60091250 CCATTTTGAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.30, C:0.28, G:0.28, T:0.15
Consensus pattern (21 bp):
TGTGAAAGGGCAACACGCCTA
Found at i:60100720 original size:53 final size:53
Alignment explanation
Indices: 60100640--60100846 Score: 162
Period size: 53 Copynumber: 3.8 Consensus size: 53
60100630 TTCCTTTTTA
* * * * *
60100640 AACTTACCATTGCCATGTCTTGACATGGTCTTCCGTGGTATCCTTGCCTTATG
1 AACTCACCATTGCCATGCCTTGACATGGTCTTACATGGGATCCTTGCCTTATG
* * *
60100693 AACTCACCGTTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAG
1 AACTCACCATTGCCATGCCTTGACATGGTCTTACATGGGATCCTTGCCTTAT-G
** * * * * * *** * *
60100747 TAGTTTATCAATGCCATGTCTTGATATGGTCTTACATGATTTCCTTGCCTTGTAA
1 -AACTCACCATTGCCATGCCTTGACATGGTCTTACATGGGATCCTTGCCTTAT-G
* * * * *
60100802 AACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTCACCATTGCCATGCCTTGACATGGTCTTACATGGGATCCTT
60100847 AAACCCTAAT
Statistics
Matches: 120, Mismatches: 32, Indels: 3
0.77 0.21 0.02
Matches are distributed among these distances:
53 44 0.37
54 37 0.31
55 39 0.32
ACGTcount: A:0.19, C:0.24, G:0.19, T:0.38
Consensus pattern (53 bp):
AACTCACCATTGCCATGCCTTGACATGGTCTTACATGGGATCCTTGCCTTATG
Found at i:60105995 original size:29 final size:29
Alignment explanation
Indices: 60105941--60105996 Score: 69
Period size: 29 Copynumber: 1.9 Consensus size: 29
60105931 GGGTAAGGGG
* **
60105941 TTTTACAAAATGACCATTTTGTCCCTAAA
1 TTTTACAAAATGAACATTTTACCCCTAAA
60105970 TTTTGACAAAAT-AACATTTTACCCCTA
1 TTTT-ACAAAATGAACATTTTACCCCTA
60105997 GGTCCAAAGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
29 16 0.70
30 7 0.30
ACGTcount: A:0.36, C:0.21, G:0.05, T:0.38
Consensus pattern (29 bp):
TTTTACAAAATGAACATTTTACCCCTAAA
Found at i:60108275 original size:66 final size:66
Alignment explanation
Indices: 60108151--60108277 Score: 157
Period size: 66 Copynumber: 1.9 Consensus size: 66
60108141 CTTATCTGGA
* * * *
60108151 CAGCTATTAGATGTGGCGACAATTCTGGACGCAATCTGGAATTAACTCATACAGCGACATTGCAG
1 CAGCTATTAGATGTAGCAACAATTCTAGACGCAATCTGGAATTAACTCATACAACGACATTGCAG
60108216 G
66 G
* * * * *
60108217 CAGCTATTAGGTGTAGTAACAATTCTAGATGCAATCTAGG-ATTAACTCTTGCAACGACATT
1 CAGCTATTAGATGTAGCAACAATTCTAGACGCAATCT-GGAATTAACTCATACAACGACATT
60108278 CATGCAATAA
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
66 49 0.96
67 2 0.04
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (66 bp):
CAGCTATTAGATGTAGCAACAATTCTAGACGCAATCTGGAATTAACTCATACAACGACATTGCAG
G
Found at i:60111783 original size:29 final size:28
Alignment explanation
Indices: 60111736--60111845 Score: 141
Period size: 29 Copynumber: 3.9 Consensus size: 28
60111726 CATGATTATG
*
60111736 AATGTGACTGGGCCTAATGGGCCATATA
1 AATGTGATTGGGCCTAATGGGCCATATA
*
60111764 AATGTGATTTGGGCCAAATGGGCCATATA
1 AATGTGA-TTGGGCCTAATGGGCCATATA
*
60111793 CAA-GTGATTTGGGCCTAATGGGCCATATG
1 -AATGTGA-TTGGGCCTAATGGGCCATATA
* *
60111822 AATATGATTGGGCTTAATGGGCCA
1 AATGTGATTGGGCCTAATGGGCCA
60111846 GATATAGGTA
Statistics
Matches: 73, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
28 25 0.34
29 46 0.63
30 2 0.03
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.27
Consensus pattern (28 bp):
AATGTGATTGGGCCTAATGGGCCATATA
Found at i:60118756 original size:68 final size:64
Alignment explanation
Indices: 60118684--60118891 Score: 195
Period size: 67 Copynumber: 3.2 Consensus size: 64
60118674 CATCATGTGT
*
60118684 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATG
1 ACAAGAGAGCTAC--GAGA-TAT-ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATG
60118749 TAG
62 TAG
* * * * * * * *
60118752 ACAAGAGAGCTACGGGATATATGTAGCTAGGTAGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGT
60118817 AG
63 AG
* * * * * *
60118819 ACAAGAGAGCTACGAGATAAACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGTAT
1 ACAAGAGAGCTACGAGATATA-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG
60118882 ACAAGAGAGC
1 ACAAGAGAGC
60118892 CGAACTATAT
Statistics
Matches: 114, Mismatches: 22, Indels: 13
0.77 0.15 0.09
Matches are distributed among these distances:
63 20 0.18
64 20 0.18
65 11 0.10
66 17 0.15
67 31 0.27
68 15 0.13
ACGTcount: A:0.33, C:0.17, G:0.28, T:0.22
Consensus pattern (64 bp):
ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG
Found at i:60121859 original size:43 final size:42
Alignment explanation
Indices: 60121779--60121859 Score: 108
Period size: 43 Copynumber: 1.9 Consensus size: 42
60121769 TAAGCTCGTA
* ****
60121779 CAATGCCATATCCCAGATATGGTCTTACATGTTATCATATAT
1 CAATGCCATATCCCAGATAGGGTCTTACACAAAATCATATAT
60121821 CAATGCCACTATCCCAGATAGGGTCTTACACAAAATCAT
1 CAATGCCA-TATCCCAGATAGGGTCTTACACAAAATCAT
60121860 TTAACGATGC
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
42 8 0.24
43 25 0.76
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.30
Consensus pattern (42 bp):
CAATGCCATATCCCAGATAGGGTCTTACACAAAATCATATAT
Found at i:60121870 original size:43 final size:42
Alignment explanation
Indices: 60121778--60121871 Score: 107
Period size: 43 Copynumber: 2.2 Consensus size: 42
60121768 ATAAGCTCGT
* ****
60121778 ACAATGCCATATCCCAGATATGGTCTTACATGTTATCATATA
1 ACAATGCCATATCCCAGATAGGGTCTTACACAAAATCATATA
* *
60121820 TCAATGCCACTATCCCAGATAGGGTCTTACACAAAATCATTTA
1 ACAATGCCA-TATCCCAGATAGGGTCTTACACAAAATCATATA
*
60121863 ACGATGCCA
1 ACAATGCCA
60121872 ATGTTCCAAA
Statistics
Matches: 42, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
42 8 0.19
43 34 0.81
ACGTcount: A:0.34, C:0.24, G:0.13, T:0.29
Consensus pattern (42 bp):
ACAATGCCATATCCCAGATAGGGTCTTACACAAAATCATATA
Found at i:60127868 original size:28 final size:28
Alignment explanation
Indices: 60127828--60127892 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
60127818 ATGTACTAGA
*
60127828 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
*
60127856 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
60127884 ATACCCCTA
1 ATACCCCTA
60127893 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:60128056 original size:27 final size:27
Alignment explanation
Indices: 60127998--60128087 Score: 119
Period size: 28 Copynumber: 3.2 Consensus size: 27
60127988 AGGAAGCGTC
60127998 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
60128026 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
60128053 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
60128082 CTGGTG
1 CTGGTG
60128088 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 23 0.42
28 25 0.45
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:60128106 original size:55 final size:56
Alignment explanation
Indices: 60127998--60128112 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
60127988 AGGAAGCGTC
* *
60127998 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
60128053 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
60128109 CTGG
1 CTGG
60128113 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.58
56 21 0.40
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:60129201 original size:11 final size:10
Alignment explanation
Indices: 60129173--60129206 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
60129163 AGCCTGTAAG
60129173 TATTCTGAAT
1 TATTCTGAAT
*
60129183 TTTTCTGAAT
1 TATTCTGAAT
60129193 ATATTCTGAAT
1 -TATTCTGAAT
60129204 TAT
1 TAT
60129207 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:60135694 original size:28 final size:28
Alignment explanation
Indices: 60135654--60135746 Score: 150
Period size: 28 Copynumber: 3.3 Consensus size: 28
60135644 ATGTACTAGA
*
60135654 ATACCCCTATGTATACAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
60135682 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
* * *
60135710 ATACCCCTATGTATGCAATATGACCTTT
1 ATACCCCTATGTATGCAAAATTACCATT
60135738 ATACCCCTA
1 ATACCCCTA
60135747 GGGTTAATTT
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 61 1.00
ACGTcount: A:0.34, C:0.27, G:0.06, T:0.32
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATTACCATT
Found at i:60135910 original size:27 final size:27
Alignment explanation
Indices: 60135852--60135941 Score: 119
Period size: 28 Copynumber: 3.2 Consensus size: 27
60135842 AGGAAGCGTC
60135852 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
60135880 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
60135907 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
60135936 CTGGTG
1 CTGGTG
60135942 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 23 0.42
28 25 0.45
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:60135960 original size:55 final size:56
Alignment explanation
Indices: 60135852--60135966 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
60135842 AGGAAGCGTC
* *
60135852 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
60135907 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
60135963 CTGG
1 CTGG
60135967 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.58
56 21 0.40
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:60140708 original size:40 final size:40
Alignment explanation
Indices: 60140664--60140889 Score: 357
Period size: 40 Copynumber: 5.7 Consensus size: 40
60140654 TACTTGCTCT
60140664 AATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACA
*
60140704 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACA
*
60140744 AATGCCTTTGGGACTTAGCCCGGTTATAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACA
* * *
60140784 AATGCCTTCGGGACTTAGCCTGGATATAGTAACTCACACA
1 AATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACA
* * *
60140824 AATGCCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCACA
1 AATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCACA
60140863 AATGCCTTCGGGACTTAGCCCGGTTAT
1 AATGCCTTCGGGACTTAGCCCGGTTAT
60140890 CATCCGAATA
Statistics
Matches: 170, Mismatches: 13, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
38 1 0.01
39 32 0.19
40 136 0.80
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACA
Found at i:60140761 original size:80 final size:80
Alignment explanation
Indices: 60140629--60140885 Score: 369
Period size: 80 Copynumber: 3.2 Consensus size: 80
60140619 AAACCAAGTA
* * * * *
60140629 CCTTCGGAATTTAG-CCGGATATAGCT-ACTTGCTCTAATGCCTTCGGGACTTAGCCCGGTTATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATA
60140692 GTAACTCGCACAAATG
65 GTAACTCGCACAAATG
*
60140708 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTTGGGACTTAGCCCGGTTATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
60140773 TAACTCGCACAAATG
66 TAACTCGCACAAATG
* * *
60140788 CCTTCGGGACTTAGCCTGGATATAGTAACTCACACAAATGCCTTCGGG-CTTAGCCCGG-AATTA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA-TA
* *
60140851 GTCACTAGCACAAATG
65 GTAACTCGCACAAATG
60140867 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
60140886 TTATCATCCG
Statistics
Matches: 162, Mismatches: 13, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
78 1 0.01
79 57 0.35
80 104 0.64
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
TAACTCGCACAAATG
Found at i:60148204 original size:20 final size:20
Alignment explanation
Indices: 60148179--60148223 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
60148169 AGGGACTAAA
* *
60148179 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAATTCTAAAATTTG
*
60148199 ATGAAAAATTCTAAAATTTT
1 ATGAAAAATTCTAAAATTTG
60148219 ATGAA
1 ATGAA
60148224 TACATATGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.49, C:0.02, G:0.13, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTG
Found at i:60162998 original size:47 final size:47
Alignment explanation
Indices: 60162944--60163137 Score: 289
Period size: 47 Copynumber: 4.1 Consensus size: 47
60162934 TTAGGATTTT
** *
60162944 ATGTGATGAATGTGAATGTGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
60162991 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
60163038 ATGTGATGAATGTGAGCACGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
60163085 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
60163132 ATGTGA
1 ATGTGA
60163138 AAAATGTATG
Statistics
Matches: 132, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 132 1.00
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:60163044 original size:22 final size:22
Alignment explanation
Indices: 60162973--60163044 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
60162963 GCATATATGA
60162973 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
60162995 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
60163020 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
60163042 GAT
1 GAT
60163045 GAATGTGAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:60163447 original size:37 final size:37
Alignment explanation
Indices: 60163339--60163447 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
60163329 GGAAATATAT
*
60163339 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
60163376 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
** **
60163413 TCCGGGTAAGACCCGAAAACTTTGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
60163448 CGTCTGAGCT
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:60170501 original size:27 final size:28
Alignment explanation
Indices: 60170453--60170519 Score: 77
Period size: 27 Copynumber: 2.5 Consensus size: 28
60170443 CATTCTACCA
*
60170453 TACAAGGGTATTACGGACATTTTAC-AC
1 TACAAGGGTATTTCGGACATTTTACAAC
* *
60170480 TACAAGGGTATTTCAGTA-ATTTTACAAG
1 TACAAGGGTATTTC-GGACATTTTACAAC
60170508 T-CAAGGGTATTT
1 TACAAGGGTATTT
60170520 ATGACCCATT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
27 31 0.89
28 4 0.11
ACGTcount: A:0.33, C:0.13, G:0.19, T:0.34
Consensus pattern (28 bp):
TACAAGGGTATTTCGGACATTTTACAAC
Found at i:60174796 original size:24 final size:24
Alignment explanation
Indices: 60174769--60174822 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
60174759 CGGAAGGTAT
**
60174769 GTATATATGTGTTTCTGTGTATAA
1 GTATATATGTGTTAATGTGTATAA
* *
60174793 GTATGTATGTGTTAATGTGTATAT
1 GTATATATGTGTTAATGTGTATAA
60174817 GTATAT
1 GTATAT
60174823 GAAGGTGTAT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.26, C:0.02, G:0.22, T:0.50
Consensus pattern (24 bp):
GTATATATGTGTTAATGTGTATAA
Found at i:60183129 original size:20 final size:20
Alignment explanation
Indices: 60183106--60183153 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
60183096 CAACCCATCT
60183106 CGGCCCAACGAGGCCCATAA
1 CGGCCCAACGAGGCCCATAA
*
60183126 CGGCCCAACGAGGCCTATAA
1 CGGCCCAACGAGGCCCATAA
60183146 CGGCCCAA
1 CGGCCCAA
60183154 GACCACGAGA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.29, C:0.40, G:0.25, T:0.06
Consensus pattern (20 bp):
CGGCCCAACGAGGCCCATAA
Found at i:60189729 original size:30 final size:30
Alignment explanation
Indices: 60189684--60189743 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
60189674 ATTTAATACG
*
60189684 AACTTTGGCAAAATTACATTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
* *
60189714 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
60189744 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:60205781 original size:33 final size:33
Alignment explanation
Indices: 60205739--60205805 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
60205729 GATTAAATTA
60205739 GTAAATTTTTATATTATATAGATTGAGATAAAC
1 GTAAATTTTTATATTATATAGATTGAGATAAAC
60205772 GTAAATTTTTATATTATATAGATTGAGATAAAC
1 GTAAATTTTTATATTATATAGATTGAGATAAAC
60205805 G
1 G
60205806 AGATTAGATC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.42, C:0.03, G:0.13, T:0.42
Consensus pattern (33 bp):
GTAAATTTTTATATTATATAGATTGAGATAAAC
Found at i:60206039 original size:44 final size:44
Alignment explanation
Indices: 60205981--60206067 Score: 120
Period size: 44 Copynumber: 2.0 Consensus size: 44
60205971 ACAAATCAAC
* * ** *
60205981 TATATGTGGCACTTAGTGTACGATTTGACATAGCTTCGGCTATA
1 TATATATGGCACTTAGTGTACAATTCAACATAGCTTCAGCTATA
*
60206025 TATATATGGCACTTAGTGTGCAATTCAACATAGCTTCAGCTAT
1 TATATATGGCACTTAGTGTACAATTCAACATAGCTTCAGCTAT
60206068 GGATGACACT
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
44 37 1.00
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.36
Consensus pattern (44 bp):
TATATATGGCACTTAGTGTACAATTCAACATAGCTTCAGCTATA
Found at i:60209621 original size:49 final size:49
Alignment explanation
Indices: 60209559--60209735 Score: 164
Period size: 49 Copynumber: 3.6 Consensus size: 49
60209549 TGACTTGTGT
* *
60209559 CAGTGTATGACCTGTCTGGGACATGGCATCGACAC-CGAAAAATGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGAC-CTCGAAAAATGAAAGC
* * * * *
60209608 CAGTGTAAAACCTGTCTGGGACATGACATC-AGCCTCGATATATGAAAGT
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGA-CCTCGAAAAATGAAAGC
* * * * **
60209657 CAGTGGAAGACCTGTCTGGGACATGGCATCGA-CT-TAGATATGTGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGAAAAATGAAAGC
* *
60209704 CAGTGTAAGACCATGTTTGGAACATGGCATCG
1 CAGTGTAAGACC-TGTCTGGGACATGGCATCG
60209736 GCATTGTACC
Statistics
Matches: 106, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
47 19 0.18
48 21 0.20
49 65 0.61
50 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGAAAAATGAAAGC
Found at i:60209684 original size:142 final size:144
Alignment explanation
Indices: 60209459--60209735 Score: 339
Period size: 142 Copynumber: 1.9 Consensus size: 144
60209449 CGACCACATT
* * ** *
60209459 ATGATAGCCAGTGTAAGACATGTCTGGGACATGCATTGGCCTCGAGATATGCAAACTAGTGTAAG
1 ATGAGAGCCAGTGTAAAACATGTCTGGGACATGCATCAGCCTCGAGATATGCAAACTAGTGGAAG
* * * * * *
60209524 ACTTGTCCGGGACGTGGCATCTACTT-GACT-TGT-GTCAGTGTATGACC-TGTCTGGGACATGG
66 ACCTGTCCGGGACATGGCATCGACTTAGA-TATGTAGCCAGTGTAAGACCATGTCTGGAACATGG
60209585 CATCGACACCGAAAA
130 CATCGACACCGAAAA
* * *
60209600 ATGAGAGCCAGTGTAAAACCTGTCTGGGACATGACATCAGCCTCGATATATG-AAAGTCAGTGGA
1 ATGAGAGCCAGTGTAAAACATGTCTGGGACATG-CATCAGCCTCGAGATATGCAAACT-AGTGGA
* *
60209664 AGACCTGTCTGGGACATGGCATCGACTTAGATATGTGAGCCAGTGTAAGACCATGTTTGGAACAT
64 AGACCTGTCCGGGACATGGCATCGACTTAGATATGT-AGCCAGTGTAAGACCATGTCTGGAACAT
60209729 GGCATCG
128 GGCATCG
60209736 GCATTGTACC
Statistics
Matches: 113, Mismatches: 16, Indels: 9
0.82 0.12 0.07
Matches are distributed among these distances:
141 34 0.30
142 45 0.40
143 5 0.04
145 12 0.11
146 17 0.15
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.25
Consensus pattern (144 bp):
ATGAGAGCCAGTGTAAAACATGTCTGGGACATGCATCAGCCTCGAGATATGCAAACTAGTGGAAG
ACCTGTCCGGGACATGGCATCGACTTAGATATGTAGCCAGTGTAAGACCATGTCTGGAACATGGC
ATCGACACCGAAAA
Found at i:60213757 original size:43 final size:42
Alignment explanation
Indices: 60213682--60213762 Score: 108
Period size: 43 Copynumber: 1.9 Consensus size: 42
60213672 TGTTGATATG
* *
60213682 AGATTTCGTATAAGACCACGTCGGGGACATGGCATCAAAATA
1 AGATTTCGTATAAGACCACATCGAGGACATGGCATCAAAATA
* * *
60213724 AGATTTCCGTATAAGACCATATCTAGGATATGGCATCAA
1 AGATTT-CGTATAAGACCACATCGAGGACATGGCATCAA
60213763 TGTAAAATCC
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
42 6 0.18
43 27 0.82
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.25
Consensus pattern (42 bp):
AGATTTCGTATAAGACCACATCGAGGACATGGCATCAAAATA
Found at i:60219962 original size:616 final size:616
Alignment explanation
Indices: 60218789--60220650 Score: 3508
Period size: 616 Copynumber: 3.0 Consensus size: 616
60218779 AGGACGGTTC
60218789 ATGGCCTCATAGACATTGAATTTCACCACCTCTCCATCGAACTCCATAGTGAGATCCCACTTTGT
1 ATGGCCTCATAGACATTGAATTTCACCACCTCTCCATCGAACTCCATAGTGAGATCCCACTTTGT
* * *
60218854 ACATCAATCTTTGTTTGAGTGGTACTTAAAAATGGCATCCCGAGAAGTATTTCAGATGAATTGGC
66 ACGTCAATCTTTGTTTGAGCGGTACTTAAAAATGGCGTCCCGAGAAGTATTTCAGATGAATTGGC
*
60218919 CGAATTTTCATCCTCCATGTCTATAATATAAAATTCAGCAGGAAATATTAGCTAGTTTACCTTGA
131 CGAATTTTCATCCTCCATGTCTATAATATAAAATTCAGCAGGAAATATTAGCTCGTTTACCTTGA
* * *
60218984 TAAGAACGTCCTGCAATACTCCCTCTGGATGCACCACAGATCTATCTGCAAGTTGGATAATCACA
196 CAAGAACGTCCTCCAATACTCCCTCTGGATGCACCACAGATCTATCTGCAAGCTGGATAATCACA
60219049 CCTGTTTCCTTTAAAGGACCCGCGTTAAGTAGTTTATAAATTGAAAAAGGCATAACATTTATTGA
261 CCTGTTTCCTTTAAAGGACCCGCGTTAAGTAGTTTATAAATTGAAAAAGGCATAACATTTATTGA
60219114 TGAGCCTAAGTCACACATTACTTTTTTAATACCGACACTACCTATTTTACAATATATGAAAAACA
326 TGAGCCTAAGTCACACATTACTTTTTTAATACCGACACTACCTATTTTACAATATATGAAAAACA
* * *
60219179 TACCTTGGTCATTACATTTGGGTAGTATTTTCCGTTGCAGTAAGGTGGACACATTTTCTATAACA
391 TACCTTGGTCATTACATTTGGGAAGTATTTTCCGTTGCAGTAAGGTGGAGACATTTTCTCTAACA
*
60219244 CTTACATTTTCATTGCCCAGAAGTTTCCTTTTACTCGTGCATAACTTTTTTAGAAATTTTTCATA
456 CTTACCTTTTCATTGCCCAGAAGTTTCCTTTTACTCGTGCATAACTTTTTTAGAAATTTTTCATA
* *
60219309 TTGTGGGATCTGCTTAATCGCATCAAGAATAGGCATGTTGATTTCCACCTTTCGAAAGGTGTCAA
521 TTGTGGGATCTGCTTAATCGCATCAAGAAGAGGCATGTTGATTTCCACCTTTCGAAAGGTGTCGA
60219374 GGATCTTCTTATCGTCTCGCTCCTTCTTGCA
586 GGATCTTCTTATCGTCTCGCTCCTTCTTGCA
60219405 ATGGCCTCATAGACATTGAATTTCACCACCTCTCCATCGAACTCCATAGTGAGATCCCACTTTGT
1 ATGGCCTCATAGACATTGAATTTCACCACCTCTCCATCGAACTCCATAGTGAGATCCCACTTTGT
60219470 ACGTCAATCTTTGTTTGAGCGGTACTTAAAAATGGCGTCCCGAGAAGTATTTCAGATGAATTGGC
66 ACGTCAATCTTTGTTTGAGCGGTACTTAAAAATGGCGTCCCGAGAAGTATTTCAGATGAATTGGC
*
60219535 CAAATTTTCATCCTCCATGTCTATAATATAAAATTCAGCAGGAAATATTAGCTCGTTTACCTTGA
131 CGAATTTTCATCCTCCATGTCTATAATATAAAATTCAGCAGGAAATATTAGCTCGTTTACCTTGA
*
60219600 CAAGAACGTCCTCCAATACTCTCTCTGGATGCACCACAGATCTATCTGCAAGCTGGATAATCACA
196 CAAGAACGTCCTCCAATACTCCCTCTGGATGCACCACAGATCTATCTGCAAGCTGGATAATCACA
60219665 CCTGTTTCCTTTAAAGGACCCGCGTTAAGTAGTTTATAAATTGAAAAAGGCATAACATTTATTGA
261 CCTGTTTCCTTTAAAGGACCCGCGTTAAGTAGTTTATAAATTGAAAAAGGCATAACATTTATTGA
60219730 TGAGCCTAAGTCACACATTACTTTTTTAATACCGACACTACCTATTTTACAATATATGAAAAACA
326 TGAGCCTAAGTCACACATTACTTTTTTAATACCGACACTACCTATTTTACAATATATGAAAAACA
*
60219795 TACCTTGGTCATTACATTTGGGAAGTATTTTTCGTTGCAGTAAGGTGGAGACATTTTCTCTAACA
391 TACCTTGGTCATTACATTTGGGAAGTATTTTCCGTTGCAGTAAGGTGGAGACATTTTCTCTAACA
60219860 CTTACCTTTTCATTGCCCAGAAGTTTCCTTTTACTCGTGCATAACTTTTTTAGAAATTTTTCATA
456 CTTACCTTTTCATTGCCCAGAAGTTTCCTTTTACTCGTGCATAACTTTTTTAGAAATTTTTCATA
*
60219925 TTGTGGGATCTGCTTAATCGCATCAAGAAGAGGCATGTTGATTTCCACCTTTTGAAAGGTGTCGA
521 TTGTGGGATCTGCTTAATCGCATCAAGAAGAGGCATGTTGATTTCCACCTTTCGAAAGGTGTCGA
*
60219990 GGATCTTCTTATCGTCTCACTCCTTCTTGCA
586 GGATCTTCTTATCGTCTCGCTCCTTCTTGCA
60220021 ATGGCCTCATAGACATTGAATTTCACCACCTCTCCATCGAACTCCATAGTGAGATCCCACTTTGT
1 ATGGCCTCATAGACATTGAATTTCACCACCTCTCCATCGAACTCCATAGTGAGATCCCACTTTGT
*
60220086 ACGTCAATCTTTGTTTGAGCGGTACTTAAAAATGGCGTCCCGAGAAGTATTTCAGATGAATTGGT
66 ACGTCAATCTTTGTTTGAGCGGTACTTAAAAATGGCGTCCCGAGAAGTATTTCAGATGAATTGGC
60220151 CGAATTTTCATCCTCCATGTCTATAATATAAAATTCAGCAGGAAATATTAGCTCGTTTACCTTGA
131 CGAATTTTCATCCTCCATGTCTATAATATAAAATTCAGCAGGAAATATTAGCTCGTTTACCTTGA
60220216 CAAGAACGTCCTCCAATACTCCCTCTGGATGCACCACAGATCTATCTGCAAGCTGGATAATCACA
196 CAAGAACGTCCTCCAATACTCCCTCTGGATGCACCACAGATCTATCTGCAAGCTGGATAATCACA
*
60220281 CCTATTTCCTTTAAAGGACCCGCGTTAAGTAGTTTATAAATTGAAAAAGGCATAACATTTATTGA
261 CCTGTTTCCTTTAAAGGACCCGCGTTAAGTAGTTTATAAATTGAAAAAGGCATAACATTTATTGA
*
60220346 TGAGCCTAAGTCACACATTACTTTTTTAATACCGACATTACCTATTTTACAATATATGAAAAACA
326 TGAGCCTAAGTCACACATTACTTTTTTAATACCGACACTACCTATTTTACAATATATGAAAAACA
60220411 TACCTTGGTCATTACATTTGGGAAGTATTTTCCGTTGCAGTAAGGTGGAGACATTTTCTCTAACA
391 TACCTTGGTCATTACATTTGGGAAGTATTTTCCGTTGCAGTAAGGTGGAGACATTTTCTCTAACA
60220476 CTTACCTTTTCATTGCCCAGAAGTTTCCTTTTACTCGTGCATAACTTTTTTAGAAATTTTTCATA
456 CTTACCTTTTCATTGCCCAGAAGTTTCCTTTTACTCGTGCATAACTTTTTTAGAAATTTTTCATA
* * *
60220541 TTGTGGGATCTGCTTAATCGCATCAAGAAGAGGCATGTTGATTTCCAGCTTTCAAAAGGTTTCGA
521 TTGTGGGATCTGCTTAATCGCATCAAGAAGAGGCATGTTGATTTCCACCTTTCGAAAGGTGTCGA
60220606 GGATCTTCTTATCGTCTCGCTCCTTCTTGCA
586 GGATCTTCTTATCGTCTCGCTCCTTCTTGCA
60220637 ATGGCCTCATAGAC
1 ATGGCCTCATAGAC
60220651 TTCCGGGAAA
Statistics
Matches: 1217, Mismatches: 29, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
616 1217 1.00
ACGTcount: A:0.29, C:0.21, G:0.16, T:0.34
Consensus pattern (616 bp):
ATGGCCTCATAGACATTGAATTTCACCACCTCTCCATCGAACTCCATAGTGAGATCCCACTTTGT
ACGTCAATCTTTGTTTGAGCGGTACTTAAAAATGGCGTCCCGAGAAGTATTTCAGATGAATTGGC
CGAATTTTCATCCTCCATGTCTATAATATAAAATTCAGCAGGAAATATTAGCTCGTTTACCTTGA
CAAGAACGTCCTCCAATACTCCCTCTGGATGCACCACAGATCTATCTGCAAGCTGGATAATCACA
CCTGTTTCCTTTAAAGGACCCGCGTTAAGTAGTTTATAAATTGAAAAAGGCATAACATTTATTGA
TGAGCCTAAGTCACACATTACTTTTTTAATACCGACACTACCTATTTTACAATATATGAAAAACA
TACCTTGGTCATTACATTTGGGAAGTATTTTCCGTTGCAGTAAGGTGGAGACATTTTCTCTAACA
CTTACCTTTTCATTGCCCAGAAGTTTCCTTTTACTCGTGCATAACTTTTTTAGAAATTTTTCATA
TTGTGGGATCTGCTTAATCGCATCAAGAAGAGGCATGTTGATTTCCACCTTTCGAAAGGTGTCGA
GGATCTTCTTATCGTCTCGCTCCTTCTTGCA
Found at i:60226069 original size:36 final size:34
Alignment explanation
Indices: 60226014--60226086 Score: 92
Period size: 36 Copynumber: 2.1 Consensus size: 34
60226004 AATTGAAAGA
* *
60226014 GAAAAGAAAATAATTCAATTCTAAATGGAAATAG
1 GAAAAGAAAATAATCCAATTCCAAATGGAAATAG
* *
60226048 GAAAAGAAAGAATAATCCAATTCCAAATTGAAGTAG
1 GAAAAG-AA-AATAATCCAATTCCAAATGGAAATAG
60226084 GAA
1 GAA
60226087 TACAAAAGTA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
34 6 0.18
35 2 0.06
36 25 0.76
ACGTcount: A:0.55, C:0.08, G:0.16, T:0.21
Consensus pattern (34 bp):
GAAAAGAAAATAATCCAATTCCAAATGGAAATAG
Found at i:60229146 original size:47 final size:47
Alignment explanation
Indices: 60229073--60229244 Score: 157
Period size: 49 Copynumber: 3.6 Consensus size: 47
60229063 AGATGCCGAC
* * *
60229073 GCCATGTCCCAAACATGGTCTTACACTGGCTAACACATCAAAGTCGAT
1 GCCATGTCCCAGACA-GGTCTTACACTGACTCACACATCAAAGTCGAT
* *
60229121 GCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCAAAGAT-GAT
1 GCCATGTCCCAGACAGGTCTTACACTGAC--TCACACATCAAAG-TCGAT
** * * * * * *
60229170 TTCGTGTCCCAGAAAGGTCTTACACTAACTCTCATCTACCAATGTCGAT
1 GCCATGTCCCAGACAGGTCTTACACTGACTCACA-C-ATCAAAGTCGAT
*
60229219 GCCATGCCCCAGACAGGTCTTACACT
1 GCCATGTCCCAGACAGGTCTTACACT
60229245 AGCTTGTATA
Statistics
Matches: 98, Mismatches: 20, Indels: 11
0.76 0.16 0.09
Matches are distributed among these distances:
47 16 0.16
48 15 0.15
49 66 0.67
50 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.26
Consensus pattern (47 bp):
GCCATGTCCCAGACAGGTCTTACACTGACTCACACATCAAAGTCGAT
Found at i:60229178 original size:49 final size:49
Alignment explanation
Indices: 60229111--60229245 Score: 164
Period size: 49 Copynumber: 2.8 Consensus size: 49
60229101 GCTAACACAT
* * *
60229111 CAAAGTCGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATAT
1 CAAAGTCGATGCCATGTCCCAGACAGGTCTTACACTAACTCTCATATAC
** * * *
60229160 CAAAGAT-GATTTCGTGTCCCAGAAAGGTCTTACACTAACTCTCATCTAC
1 CAAAG-TCGATGCCATGTCCCAGACAGGTCTTACACTAACTCTCATATAC
* *
60229209 CAATGTCGATGCCATGCCCCAGACAGGTCTTACACTA
1 CAAAGTCGATGCCATGTCCCAGACAGGTCTTACACTA
60229246 GCTTGTATAT
Statistics
Matches: 70, Mismatches: 14, Indels: 4
0.80 0.16 0.05
Matches are distributed among these distances:
48 1 0.01
49 68 0.97
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (49 bp):
CAAAGTCGATGCCATGTCCCAGACAGGTCTTACACTAACTCTCATATAC
Found at i:60229363 original size:46 final size:46
Alignment explanation
Indices: 60229261--60229387 Score: 152
Period size: 46 Copynumber: 2.8 Consensus size: 46
60229251 TATATCTCGA
* *
60229261 GGCCGATGCATGTCCCAGACATGTCTTATACTAGCTCTCGTCTCAAT
1 GGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCG-ATCAAT
* * *
60229308 -ACCGGTGCATGTCCCAGACATGTCTTACACTGGCTCTC-AT-AATGT
1 GGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGATCAA--T
*
60229353 GGCCGATGCATGTCTCAGACATGTCTTACACTAGC
1 GGCCGATGCATGTCCCAGACATGTCTTACACTAGC
60229388 ACACATATCA
Statistics
Matches: 68, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
43 2 0.03
44 1 0.01
45 1 0.01
46 64 0.94
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.28
Consensus pattern (46 bp):
GGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGATCAAT
Done.