Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 176 of 295
Found at i:60232681 original size:42 final size:42
Alignment explanation
Indices: 60232619--60232764 Score: 157
Period size: 42 Copynumber: 3.5 Consensus size: 42
60232609 TGTGTTATCA
** * * *
60232619 TGTAAGACCATATCTAGGATATGGCGTTGATATGAGATTTCG
1 TGTAAGACCACGTCTGGGATATGGCATCGATATGAGATTTCG
* * *
60232661 TGTAAGACCACGTCGGGGATATGGCATCGAAATAAGATTTTCG
1 TGTAAGACCACGTCTGGGATATGGCATCGATATGAGA-TTTCG
* ** * * *
60232704 TATAAGACCATATCTGGGATATGGCATCGATGTGAGATTCCA
1 TGTAAGACCACGTCTGGGATATGGCATCGATATGAGATTTCG
60232746 TGTAAGACCACGTCTGGGA
1 TGTAAGACCACGTCTGGGA
60232765 CATAGCATTG
Statistics
Matches: 83, Mismatches: 20, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
42 48 0.58
43 35 0.42
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.28
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGATATGGCATCGATATGAGATTTCG
Found at i:60232742 original size:43 final size:43
Alignment explanation
Indices: 60232569--60232742 Score: 154
Period size: 43 Copynumber: 4.0 Consensus size: 43
60232559 GATAAGATCC
* *
60232569 CGTATAAGACCATATCTGGGATATGGCATCGGCATCATTTTGTG-TTAT
1 CGTATAAGACCATATCTGGGATATGGCATC-G-AT-A---TGAGATTTT
* * * * *
60232617 CATGTAAGACCATATCTAGGATATGGCGTTGATATGAGA-TTT
1 CGTATAAGACCATATCTGGGATATGGCATCGATATGAGATTTT
* ** * * *
60232659 CGTGTAAGACCACGTCGGGGATATGGCATCGAAATAAGATTTT
1 CGTATAAGACCATATCTGGGATATGGCATCGATATGAGATTTT
*
60232702 CGTATAAGACCATATCTGGGATATGGCATCGATGTGAGATT
1 CGTATAAGACCATATCTGGGATATGGCATCGATATGAGATT
60232743 CCATGTAAGA
Statistics
Matches: 101, Mismatches: 23, Indels: 9
0.76 0.17 0.07
Matches are distributed among these distances:
42 35 0.35
43 37 0.37
45 1 0.01
46 2 0.02
47 1 0.01
48 25 0.25
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (43 bp):
CGTATAAGACCATATCTGGGATATGGCATCGATATGAGATTTT
Found at i:60241169 original size:44 final size:43
Alignment explanation
Indices: 60241134--60241220 Score: 115
Period size: 44 Copynumber: 2.0 Consensus size: 43
60241124 AGATCACATT
*
60241134 TGGAACGTTTGCATCG-ACTTATGATTTATGTGTAAGACCATGTC
1 TGGAACGTTGGCATCGTA-TT-TGATTTATGTGTAAGACCATGTC
* *
60241178 TGGGACGTTGGCATCGTATTTGATTTA-GTGTAAGACCCTGTC
1 TGGAACGTTGGCATCGTATTTGATTTATGTGTAAGACCATGTC
60241220 T
1 T
60241221 AAGACAATGG
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
42 15 0.38
43 7 0.18
44 16 0.41
45 1 0.03
ACGTcount: A:0.22, C:0.16, G:0.25, T:0.37
Consensus pattern (43 bp):
TGGAACGTTGGCATCGTATTTGATTTATGTGTAAGACCATGTC
Found at i:60241220 original size:42 final size:44
Alignment explanation
Indices: 60241138--60241220 Score: 118
Period size: 42 Copynumber: 1.9 Consensus size: 44
60241128 CACATTTGGA
*
60241138 ACGTTTGCATCGACTTATGATTTATGTGTAAGACCATGTCTGGG
1 ACGTTGGCATCGACTTATGATTTATGTGTAAGACCATGTCTGGG
*
60241182 ACGTTGGCATCGTA-TT-TGATTTA-GTGTAAGACCCTGTCT
1 ACGTTGGCATCG-ACTTATGATTTATGTGTAAGACCATGTCT
60241221 AAGACAATGG
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
42 15 0.42
43 7 0.19
44 13 0.36
45 1 0.03
ACGTcount: A:0.22, C:0.17, G:0.24, T:0.37
Consensus pattern (44 bp):
ACGTTGGCATCGACTTATGATTTATGTGTAAGACCATGTCTGGG
Found at i:60241241 original size:43 final size:43
Alignment explanation
Indices: 60241155--60241242 Score: 106
Period size: 42 Copynumber: 2.0 Consensus size: 43
60241145 CATCGACTTA
** ** *
60241155 TGATTTATGTGTAAGACCATGTCTGGGACGTTGGCATCGTATT
1 TGATTTATGTGTAAGACCATGTCTAAGACAATGGCATCATATT
*
60241198 TGATTTA-GTGTAAGACCCTGTCTAAGACAATGGCATCAATATT
1 TGATTTATGTGTAAGACCATGTCTAAGACAATGGCATC-ATATT
60241241 TG
1 TG
60241243 GTTACATGTA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
42 25 0.66
43 13 0.34
ACGTcount: A:0.26, C:0.15, G:0.24, T:0.35
Consensus pattern (43 bp):
TGATTTATGTGTAAGACCATGTCTAAGACAATGGCATCATATT
Found at i:60242389 original size:54 final size:54
Alignment explanation
Indices: 60242287--60242389 Score: 129
Period size: 54 Copynumber: 1.9 Consensus size: 54
60242277 ACACGATCGC
* * *
60242287 ACACACAAGCGTGTGCTAGACCGTGTGGCCAAGTCAGTTTCAAGCACGGAATAA
1 ACACACAAGCGTGTGCTAGACCGTGTGCCCAAGTCAGTATCAACCACGGAATAA
* *
60242341 ACACACGAGCGTGTGGCT-GGCCGTGTGACCCAAGTCA-TATCAACCACGG
1 ACACACAAGCGTGT-GCTAGACCGTGTG-CCCAAGTCAGTATCAACCACGG
60242390 CCAAGGAACA
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
54 31 0.74
55 11 0.26
ACGTcount: A:0.28, C:0.27, G:0.27, T:0.17
Consensus pattern (54 bp):
ACACACAAGCGTGTGCTAGACCGTGTGCCCAAGTCAGTATCAACCACGGAATAA
Found at i:60249023 original size:25 final size:25
Alignment explanation
Indices: 60248995--60249064 Score: 88
Period size: 25 Copynumber: 2.8 Consensus size: 25
60248985 CTCTTTTAGT
*
60248995 AACTGGGGTAAAGCCC-TTTCTGATA
1 AACTGGGGCAAAGCCCTTTTC-GATA
* *
60249020 AACTTGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
60249045 AACTGGGGCAGAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
60249065 AGCACTTCCT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
25 35 0.90
26 4 0.10
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:60249923 original size:27 final size:27
Alignment explanation
Indices: 60249864--60249925 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
60249854 CATATTCGTT
60249864 ATTTTACCATACAAGGGTATTACGGTC
1 ATTTTACCATACAAGGGTATTACGGTC
* * *
60249891 ACTTTACCCTACAGGGGCT-TTACGGTC
1 ATTTTACCATACAAGGG-TATTACGGTC
*
60249918 TTTTTACC
1 ATTTTACC
60249926 TATTAGGGGT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
27 28 0.97
28 1 0.03
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.35
Consensus pattern (27 bp):
ATTTTACCATACAAGGGTATTACGGTC
Found at i:60250009 original size:27 final size:27
Alignment explanation
Indices: 60249983--60250112 Score: 111
Period size: 27 Copynumber: 4.7 Consensus size: 27
60249973 ATCTACAAAC
*
60249983 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTCAGTAATTTTGTAAAT
*
60250010 CAATGGTATTTCTA-TAATTTT-TAGAAAGT
1 CAAGGGTATTTC-AGTAATTTTGT--AAA-T
**
60250039 CAAGGGTATTTTTGTAATTTTGTAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
* ** **
60250066 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
**
60250093 TGAGGGTATTTCAGTAATTT
1 CAAGGGTATTTCAGTAATTT
60250113 CACAAACCAG
Statistics
Matches: 83, Mismatches: 14, Indels: 12
0.76 0.13 0.11
Matches are distributed among these distances:
26 1 0.01
27 57 0.69
28 7 0.08
29 17 0.20
30 1 0.01
ACGTcount: A:0.31, C:0.07, G:0.19, T:0.43
Consensus pattern (27 bp):
CAAGGGTATTTCAGTAATTTTGTAAAT
Found at i:60250128 original size:54 final size:53
Alignment explanation
Indices: 60249985--60250211 Score: 186
Period size: 54 Copynumber: 4.2 Consensus size: 53
60249975 CTACAAACCA
** ** * *
60249985 AGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCT-ATAATTTTTAGAAAGTCA
1 AGGGTATTTCAGTAATTTTACAAACCAGGGGTATTT-TGATAA-TTTTACAAA-T-T
** ** * *
60250041 AGGGTATTTTTGTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAATT
1 AGGGTATTTCAGTAATTTTACAAACCAGGGGTATTTTGATAATTTTACAAATT
* * * *
60250094 GAGGGTATTTCAGTAATTTCACAAACCAGTGGTATTTCGATAATTTTACAAACT
1 -AGGGTATTTCAGTAATTTTACAAACCAGGGGTATTTTGATAATTTTACAAATT
** * * * *
60250148 AGGGGTATTTTGGTAATTTAACAAACTAGGGGTATTTTGGTAATTTTACAAACT
1 A-GGGTATTTCAGTAATTTTACAAACCAGGGGTATTTTGATAATTTTACAAATT
60250202 AGGGGTATTT
1 A-GGGTATTT
60250212 TGGTAATTCT
Statistics
Matches: 143, Mismatches: 25, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
53 1 0.01
54 99 0.69
55 9 0.06
56 34 0.24
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (53 bp):
AGGGTATTTCAGTAATTTTACAAACCAGGGGTATTTTGATAATTTTACAAATT
Found at i:60250212 original size:54 final size:54
Alignment explanation
Indices: 60250042--60250219 Score: 223
Period size: 54 Copynumber: 3.3 Consensus size: 54
60250032 AGAAAGTCAA
* *** * *
60250042 GGGTATTTTTGTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAA-TTG
1 GGGTATTTTGGTAATTTAACAAACCAGGGGTATTTTGGTAATTTTACAAACTAG
** * * * *
60250095 AGGGTATTTCAGTAATTTCACAAACCAGTGGTATTTCGATAATTTTACAAACTAG
1 -GGGTATTTTGGTAATTTAACAAACCAGGGGTATTTTGGTAATTTTACAAACTAG
*
60250150 GGGTATTTTGGTAATTTAACAAACTAGGGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTAACAAACCAGGGGTATTTTGGTAATTTTACAAACTAG
60250204 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
60250220 CTATTCTACA
Statistics
Matches: 106, Mismatches: 17, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
54 104 0.98
55 2 0.02
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.41
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTAACAAACCAGGGGTATTTTGGTAATTTTACAAACTAG
Found at i:60250219 original size:81 final size:81
Alignment explanation
Indices: 60250042--60250219 Score: 216
Period size: 81 Copynumber: 2.2 Consensus size: 81
60250032 AGAAAGTCAA
* ** * *
60250042 GGGTATTTTTGTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCAG
1 GGGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTAACAAATAGAGGGTATTTCAG
60250107 TAATTTCACAAACCAG
66 TAATTTCACAAACCAG
* * * *
60250123 TGGTATTTCGATAATTTTACAAA-CTAGGGGTATTTTGGTAATTTAACAAACTAG-GGGTATTTT
1 GGGTATTTTGGTAATTTTACAAATC-AGGGGTATTTTGGTAATTTAACAAA-TAGAGGGTATTTC
* * *
60250186 GGTAATTTTACAAACTAG
64 AGTAATTTCACAAACCAG
60250204 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
60250220 CTATTCTACA
Statistics
Matches: 80, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
80 1 0.01
81 77 0.96
82 2 0.03
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.41
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTAACAAATAGAGGGTATTTCAG
TAATTTCACAAACCAG
Found at i:60250233 original size:54 final size:52
Alignment explanation
Indices: 60250042--60250252 Score: 201
Period size: 54 Copynumber: 3.9 Consensus size: 52
60250032 AGAAAGTCAA
* ** * *
60250042 GGGTATTTTTGTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAA-TTG
1 GGGTATTTTGGTAA-TTTACAAA-CAGGGGTATTTCGGTAATTTTACAAACTAG
** * *
60250095 AGGGTATTTCAGTAATTTCACAAACCAGTGGTATTTCGATAATTTTACAAACTAG
1 -GGGTATTTTGGTAATTT-ACAAA-CAGGGGTATTTCGGTAATTTTACAAACTAG
*
60250150 GGGTATTTTGGTAATTTAACAAACTAGGGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTT-ACAAAC-AGGGGTATTTCGGTAATTTTACAAACTAG
* * *
60250204 GGGTATTTTGGTAATTCTATTC-TACAGGGGTATTTCAGTAATTTCACAA
1 GGGTATTTTGGTAATT-TA--CAAACAGGGGTATTTCGGTAATTTTACAA
60250253 TTGAGGGTAA
Statistics
Matches: 132, Mismatches: 19, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
53 4 0.03
54 122 0.92
55 5 0.04
56 1 0.01
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.40
Consensus pattern (52 bp):
GGGTATTTTGGTAATTTACAAACAGGGGTATTTCGGTAATTTTACAAACTAG
Found at i:60250238 original size:27 final size:28
Alignment explanation
Indices: 60250042--60250219 Score: 183
Period size: 27 Copynumber: 6.6 Consensus size: 28
60250032 AGAAAGTCAA
* **
60250042 GGGTATTTTTGTAATTT-TGTAAA-TCAG
1 GGGTATTTTGGTAATTTATACAAACT-AG
*
60250069 GGGTATTTTGGTAATTT-TACAAA-TTG
1 GGGTATTTTGGTAATTTATACAAACTAG
** * *
60250095 AGGGTATTTCAGTAATTT-CACAAACCAG
1 -GGGTATTTTGGTAATTTATACAAACTAG
* * *
60250123 TGGTATTTCGATAATTT-TACAAACTAG
1 GGGTATTTTGGTAATTTATACAAACTAG
60250150 GGGTATTTTGGTAATTTA-ACAAACTAG
1 GGGTATTTTGGTAATTTATACAAACTAG
60250177 GGGTATTTTGGTAATTT-TACAAACTAG
1 GGGTATTTTGGTAATTTATACAAACTAG
60250204 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
60250220 CTATTCTACA
Statistics
Matches: 130, Mismatches: 17, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
26 1 0.01
27 128 0.98
28 1 0.01
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.41
Consensus pattern (28 bp):
GGGTATTTTGGTAATTTATACAAACTAG
Found at i:60250284 original size:27 final size:27
Alignment explanation
Indices: 60250255--60250394 Score: 192
Period size: 27 Copynumber: 5.2 Consensus size: 27
60250245 TTTCACAATT
* *
60250255 GAGGGTAAAACGGTAATTTTATAAA-C
1 GAGGGTAAAATGGTAATTCTATAAATC
* * *
60250281 TGAGGGTAAAATGGTTATTTTGTAAATC
1 -GAGGGTAAAATGGTAATTCTATAAATC
*
60250309 GAGGGTAAAACGGTAATTCTATAAATC
1 GAGGGTAAAATGGTAATTCTATAAATC
60250336 GAGGGTAAAATGGTAATTCTATAAATC
1 GAGGGTAAAATGGTAATTCTATAAATC
* *
60250363 GAAGGTAAAATGGTAATTCTACAAATC
1 GAGGGTAAAATGGTAATTCTATAAATC
60250390 GAGGG
1 GAGGG
60250395 CATTTCAGTA
Statistics
Matches: 101, Mismatches: 11, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
27 100 0.99
28 1 0.01
ACGTcount: A:0.39, C:0.08, G:0.24, T:0.29
Consensus pattern (27 bp):
GAGGGTAAAATGGTAATTCTATAAATC
Found at i:60255027 original size:43 final size:42
Alignment explanation
Indices: 60254925--60255035 Score: 123
Period size: 43 Copynumber: 2.6 Consensus size: 42
60254915 TGTTATCATG
* ** * * *
60254925 TAAGACCACATCTGGGATATGGCGTTGATATTAGATTTCGTG
1 TAAGACCACATCTGGGATATGGCATCAAAATAAGATTTCGTA
* * *
60254967 TAAGACTACCTCGGGGATATGGCATCAAAATAAGATTTTCGTA
1 TAAGACCACATCTGGGATATGGCATCAAAATAAGA-TTTCGTA
*
60255010 TAAGACCATATCTGGGATATGGCATC
1 TAAGACCACATCTGGGATATGGCATC
60255036 GATGTGAGAT
Statistics
Matches: 55, Mismatches: 13, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
42 27 0.49
43 28 0.51
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (42 bp):
TAAGACCACATCTGGGATATGGCATCAAAATAAGATTTCGTA
Found at i:60261336 original size:40 final size:40
Alignment explanation
Indices: 60261278--60261495 Score: 273
Period size: 40 Copynumber: 5.5 Consensus size: 40
60261268 TAACCACTCG
* * * * *
60261278 CAAA-GCCATCGGGCCTTAGCCCGG-ATATGGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
60261317 CAAATGCCTTCGGGACTTAGCCCGG-ATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
*
60261357 CAAATGCCTTCGAGACTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
60261397 CAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * * **
60261437 CAAATGCCTTCGGGACTTAACCCGGAATTAATCACTAACA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
60261477 CAAAT-CTCTTCGGGACTTA
1 CAAATGC-CTTCGGGACTTA
60261496 ACCCCGTTAT
Statistics
Matches: 164, Mismatches: 12, Indels: 5
0.91 0.07 0.03
Matches are distributed among these distances:
39 5 0.03
40 157 0.96
41 2 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:60261496 original size:40 final size:40
Alignment explanation
Indices: 60261314--60261499 Score: 277
Period size: 40 Copynumber: 4.7 Consensus size: 40
60261304 ATGGTCACTA
*
60261314 GCACAAATGCCTTCGGGACTTAGCCCGG-ATATAGTAACTC
1 GCACAAATGCCTTCGGGACTTAACCCGGAAT-TAGTAACTC
* *
60261354 GCACAAATGCCTTCGAGACTTAGCCCGGAATTAGTAACTC
1 GCACAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTC
60261394 GCACAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTC
1 GCACAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTC
* * *
60261434 GCACAAATGCCTTCGGGACTTAACCCGGAATTAATCACTA
1 GCACAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTC
*
60261474 ACACAAAT-CTCTTCGGGACTTAACCC
1 GCACAAATGC-CTTCGGGACTTAACCC
60261500 CGTTATCATC
Statistics
Matches: 137, Mismatches: 7, Indels: 4
0.93 0.05 0.03
Matches are distributed among these distances:
39 1 0.01
40 134 0.98
41 2 0.01
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTC
Found at i:60269524 original size:40 final size:40
Alignment explanation
Indices: 60269477--60269680 Score: 259
Period size: 40 Copynumber: 5.1 Consensus size: 40
60269467 GCCATCGGGC
* * *
60269477 CTTAGCCCGG-ATATGGTCACTAGCACAAATGCCTTCGAGA
1 CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGAGA
60269517 CTTAGCCCGG-ATATAGTAACTCGCACAAATGCCTTCGAGA
1 CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGAGA
*
60269557 CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGA
1 CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGAGA
* *
60269597 CTTAACTCGGAATTAGTAACTCGCACAAATGCCTTCGAGA
1 CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGAGA
* * * * * * *
60269637 CTTAACCCGAAATTAATCACTAGCACAAATGTCTTCGGGA
1 CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGAGA
60269677 CTTA
1 CTTA
60269681 ACCCCGTTAT
Statistics
Matches: 149, Mismatches: 14, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
40 147 0.99
41 2 0.01
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.24
Consensus pattern (40 bp):
CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGAGA
Found at i:60269583 original size:80 final size:80
Alignment explanation
Indices: 60269477--60269684 Score: 294
Period size: 80 Copynumber: 2.6 Consensus size: 80
60269467 GCCATCGGGC
* * *
60269477 CTTAGCCCGG-ATATGGTCACTAGCACAAATGCCTTCGAGACTTAGCCCGG-ATATAGTAACTCG
1 CTTAGCCCGGAAT-TAGTCACTAGCACAAATGCCTTCGGGACTTAACCCGGAAT-TAGTAACTCG
60269540 CACAAATGCCTTCGAGA
64 CACAAATGCCTTCGAGA
* * *
60269557 CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACTCGGAATTAGTAACTCGCA
1 CTTAGCCCGGAATTAGTCACTAGCACAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCA
60269622 CAAATGCCTTCGAGA
66 CAAATGCCTTCGAGA
* * * *
60269637 CTTAACCCGAAATTAATCACTAGCACAAATGTCTTCGGGACTTAACCC
1 CTTAGCCCGGAATTAGTCACTAGCACAAATGCCTTCGGGACTTAACCC
60269685 CGTTATCATC
Statistics
Matches: 113, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
80 109 0.96
81 4 0.04
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (80 bp):
CTTAGCCCGGAATTAGTCACTAGCACAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCA
CAAATGCCTTCGAGA
Found at i:60269681 original size:40 final size:40
Alignment explanation
Indices: 60269499--60269684 Score: 266
Period size: 40 Copynumber: 4.7 Consensus size: 40
60269489 ATGGTCACTA
*
60269499 GCACAAATGCCTTCGAGACTTAGCCCGG-ATATAGTAACTC
1 GCACAAATGCCTTCGAGACTTAACCCGGAAT-TAGTAACTC
*
60269539 GCACAAATGCCTTCGAGACTTAGCCCGGAATTAGTAACTC
1 GCACAAATGCCTTCGAGACTTAACCCGGAATTAGTAACTC
* *
60269579 GCACAAATGCCTTCGGGACTTAACTCGGAATTAGTAACTC
1 GCACAAATGCCTTCGAGACTTAACCCGGAATTAGTAACTC
* * * *
60269619 GCACAAATGCCTTCGAGACTTAACCCGAAATTAATCACTA
1 GCACAAATGCCTTCGAGACTTAACCCGGAATTAGTAACTC
* *
60269659 GCACAAATGTCTTCGGGACTTAACCC
1 GCACAAATGCCTTCGAGACTTAACCC
60269685 CGTTATCATC
Statistics
Matches: 134, Mismatches: 11, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
40 132 0.99
41 2 0.01
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGAGACTTAACCCGGAATTAGTAACTC
Found at i:60274585 original size:42 final size:42
Alignment explanation
Indices: 60274431--60274589 Score: 133
Period size: 42 Copynumber: 3.8 Consensus size: 42
60274421 TTTTGTGTTA
* * *
60274431 TCATGTAAGACCATAAT-TGGAATATGGCATTGATATGAGATT
1 TCATGTAAGACCA-CATCTGGGACATGGCATTGATATGAGATT
* * * *
60274473 TCATGTAAGACCACGT-TGAGGACATGGCATCGAAATAAGATTT
1 TCATGTAAGACCACATCTG-GGACATGGCATTGATATGAGA-TT
* * * * * * *
60274516 TCGTATAAGACCATATCTGAGATATGGCATTGATGTGAGATC
1 TCATGTAAGACCACATCTGGGACATGGCATTGATATGAGATT
* *
60274558 ACATGTAAGACCACCTCTGGGACATGGCATTG
1 TCATGTAAGACCACATCTGGGACATGGCATTG
60274590 GCATCTTAAT
Statistics
Matches: 89, Mismatches: 25, Indels: 6
0.74 0.21 0.05
Matches are distributed among these distances:
41 3 0.03
42 55 0.62
43 29 0.33
44 2 0.02
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.28
Consensus pattern (42 bp):
TCATGTAAGACCACATCTGGGACATGGCATTGATATGAGATT
Found at i:60275584 original size:29 final size:28
Alignment explanation
Indices: 60275524--60275585 Score: 108
Period size: 27 Copynumber: 2.2 Consensus size: 28
60275514 GTGTCTCAAC
60275524 CGTGTGTGGCACACGGTCTATCCCAAGG
1 CGTGTGTGGCACACGGTCTATCCCAAGG
60275552 -GTGTGTGGCACACGGTCTATCCCAAGG
1 CGTGTGTGGCACACGGTCTATCCCAAGG
60275579 ACGTGTG
1 -CGTGTG
60275586 GTCTGGCCGT
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
27 27 0.84
29 5 0.16
ACGTcount: A:0.18, C:0.26, G:0.34, T:0.23
Consensus pattern (28 bp):
CGTGTGTGGCACACGGTCTATCCCAAGG
Found at i:60277200 original size:46 final size:46
Alignment explanation
Indices: 60277148--60277418 Score: 223
Period size: 46 Copynumber: 5.8 Consensus size: 46
60277138 GATATTTGGG
60277148 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
* * * * *
60277194 CATCCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATGTAACTAGG
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-A
*
60277241 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
** * * * *
60277287 CGCCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-A
* *
60277334 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTTACTTATGGATGC-AA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
* * * * * * *
60277379 AAGCCCGAGCTCATTGAGTTGAATCCAAGTTCGCTTATGG
1 CA-TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
60277419 GCGGGTTACA
Statistics
Matches: 180, Mismatches: 30, Indels: 30
0.75 0.12 0.12
Matches are distributed among these distances:
43 8 0.04
45 5 0.03
46 94 0.52
47 61 0.34
48 4 0.02
50 8 0.04
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
Found at i:60277270 original size:93 final size:93
Alignment explanation
Indices: 60277146--60277411 Score: 417
Period size: 93 Copynumber: 2.9 Consensus size: 93
60277136 CGGATATTTG
*
60277146 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAG
*
60277211 TTGAGTCTGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
60277239 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAG
60277304 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * * * *
60277332 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTTACTTATGGATGC-AAAAGCCCGAGCTCATTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACA-CCCGAACTCGTTGA
* *
60277396 GTTGAATCCAAGTTCG
65 GTTGAGTCCGAGTTCG
60277412 CTTATGGGCG
Statistics
Matches: 159, Mismatches: 13, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
92 2 0.01
93 157 0.99
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:60281358 original size:21 final size:20
Alignment explanation
Indices: 60281307--60281358 Score: 50
Period size: 21 Copynumber: 2.5 Consensus size: 20
60281297 TATTAAAATA
* *
60281307 TAATATTAATGAATAATATT
1 TAATATAAAAGAATAATATT
**
60281327 TTTTATCAAAAGAATAATATT
1 TAATAT-AAAAGAATAATATT
60281348 TAAATATAAAA
1 T-AATATAAAA
60281359 TATTATCTTT
Statistics
Matches: 24, Mismatches: 6, Indels: 3
0.73 0.18 0.09
Matches are distributed among these distances:
20 4 0.17
21 17 0.71
22 3 0.12
ACGTcount: A:0.54, C:0.02, G:0.04, T:0.40
Consensus pattern (20 bp):
TAATATAAAAGAATAATATT
Found at i:60281475 original size:10 final size:10
Alignment explanation
Indices: 60281462--60281532 Score: 51
Period size: 9 Copynumber: 7.5 Consensus size: 10
60281452 ATTTTTATTT
*
60281462 TAAATTATAG
1 TAAATTATAA
* *
60281472 TAAAATAT-T
1 TAAATTATAA
*
60281481 TAAATTAT-T
1 TAAATTATAA
*
60281490 TATATTA-AA
1 TAAATTATAA
* *
60281499 TTAATT-TAT
1 TAAATTATAA
60281508 TAAATTATAA
1 TAAATTATAA
60281518 TAAATTATAA
1 TAAATTATAA
60281528 TAAAT
1 TAAAT
60281533 ATTTAAAATA
Statistics
Matches: 48, Mismatches: 10, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
9 24 0.50
10 24 0.50
ACGTcount: A:0.52, C:0.00, G:0.01, T:0.46
Consensus pattern (10 bp):
TAAATTATAA
Found at i:60281496 original size:9 final size:9
Alignment explanation
Indices: 60281411--60281545 Score: 55
Period size: 10 Copynumber: 14.7 Consensus size: 9
60281401 TTTTTTATTT
60281411 TTATATTAAA
1 TTAT-TTAAA
*
60281421 TTGTATTAAA
1 TTAT-TTAAA
*
60281431 TTTTATTAAA
1 TTAT-TTAAA
*
60281441 ATATTTAAA
1 TTATTTAAA
*
60281450 ATATTT---
1 TTATTTAAA
60281456 TTATTTTAAA
1 TTA-TTTAAA
*
60281466 TTATAGTAAA
1 TTAT-TTAAA
*
60281476 ATATTTAAA
1 TTATTTAAA
*
60281485 TTATTTATA
1 TTATTTAAA
* *
60281494 TTAAATTAAT
1 TT-ATTTAAA
60281504 TTA-TTAAA
1 TTATTTAAA
*
60281512 TTATAATAAA
1 TTAT-TTAAA
*
60281522 TTATAATAAA
1 TTAT-TTAAA
60281532 -TATTTAAA
1 TTATTTAAA
*
60281540 ATATTT
1 TTATTT
60281546 TATTTTTATA
Statistics
Matches: 100, Mismatches: 16, Indels: 19
0.74 0.12 0.14
Matches are distributed among these distances:
6 2 0.02
7 3 0.03
8 11 0.11
9 34 0.34
10 50 0.50
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.51
Consensus pattern (9 bp):
TTATTTAAA
Found at i:60281498 original size:33 final size:35
Alignment explanation
Indices: 60281424--60281501 Score: 106
Period size: 35 Copynumber: 2.3 Consensus size: 35
60281414 TATTAAATTG
* * *
60281424 TATTAAATTTTATTAAAATATTTAAAATATTTTTA
1 TATTAAATTATAGTAAAATATTTAAAATATATTTA
*
60281459 TTTTAAATTATAGTAAAATATTT-AAAT-TATTTA
1 TATTAAATTATAGTAAAATATTTAAAATATATTTA
60281492 TATTAAATTA
1 TATTAAATTA
60281502 ATTTATTAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
33 14 0.37
34 4 0.11
35 20 0.53
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (35 bp):
TATTAAATTATAGTAAAATATTTAAAATATATTTA
Found at i:60281510 original size:13 final size:14
Alignment explanation
Indices: 60281480--60281514 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
60281470 AGTAAAATAT
*
60281480 TTAAATTATTTATA
1 TTAAATTAATTATA
60281494 TTAAATTAATT-TA
1 TTAAATTAATTATA
60281507 TTAAATTA
1 TTAAATTA
60281515 TAATAAATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 10 0.50
14 10 0.50
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (14 bp):
TTAAATTAATTATA
Found at i:60281515 original size:23 final size:23
Alignment explanation
Indices: 60281414--60281521 Score: 66
Period size: 23 Copynumber: 4.7 Consensus size: 23
60281404 TTTATTTTTA
*
60281414 TATTAAATTGTATT-AAAT--TT
1 TATTAAATTATATTAAAATAATT
* *
60281434 TATTAAAATAT-TTAAAATATTTT
1 TATTAAATTATATTAAAATA-ATT
*
60281457 TATTTTAAATTATAGTAAAAT-ATT
1 TA--TTAAATTATATTAAAATAATT
* *
60281481 TAAATT-ATTTATATTAAATTAATT
1 T--ATTAAATTATATTAAAATAATT
*
60281505 TATTAAATTATAATAAA
1 TATTAAATTATATTAAA
60281522 TTATAATAAA
Statistics
Matches: 67, Mismatches: 10, Indels: 19
0.70 0.10 0.20
Matches are distributed among these distances:
19 2 0.03
20 13 0.19
22 3 0.04
23 25 0.37
24 9 0.13
25 8 0.12
26 7 0.10
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (23 bp):
TATTAAATTATATTAAAATAATT
Found at i:60281591 original size:59 final size:60
Alignment explanation
Indices: 60281522--60281727 Score: 244
Period size: 59 Copynumber: 3.4 Consensus size: 60
60281512 TTATAATAAA
*
60281522 TTATAATAAA-TATTTAAAATATTTTATTTTTATATTTTCTTAAATTTAGAAATAATATT
1 TTATATTAAATTATTTAAAATATTTTATTTTTATATTTTCTTAAATTTAGAAATAATATT
* * * *
60281581 TTATATTAAATTATATTAAAAGATTTT-TTTGTT-T-TTATATTAAATTATATTAAA-AATATT
1 TTATATTAAATTAT-TTAAAATATTTTATTT-TTATATTTTCTTAAATT-TA-GAAATAATATT
* *
60281641 TTATATTAAATTATTCAAAATA-TTTATTTTTATATTTTCTGAAATTTAGAAATAATATT
1 TTATATTAAATTATTTAAAATATTTTATTTTTATATTTTCTTAAATTTAGAAATAATATT
*
60281700 TTATATTAAATTATATTAGAAAGATTTT
1 TTATATTAAATTAT-TTA-AAATATTTT
60281728 TCTATTTTCT
Statistics
Matches: 122, Mismatches: 13, Indels: 21
0.78 0.08 0.13
Matches are distributed among these distances:
58 8 0.07
59 51 0.42
60 40 0.33
61 20 0.16
62 3 0.02
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.53
Consensus pattern (60 bp):
TTATATTAAATTATTTAAAATATTTTATTTTTATATTTTCTTAAATTTAGAAATAATATT
Found at i:60281676 original size:21 final size:23
Alignment explanation
Indices: 60281625--60281676 Score: 54
Period size: 24 Copynumber: 2.3 Consensus size: 23
60281615 TTATATTAAA
60281625 TTATATTAAAAATATTTTATATT
1 TTATATTAAAAATATTTTATATT
** *
60281648 AAATTATTCAAAATA-TTTAT-TT
1 TTA-TATTAAAAATATTTTATATT
60281670 TTATATT
1 TTATATT
60281677 TTCTGAAATT
Statistics
Matches: 23, Mismatches: 5, Indels: 4
0.72 0.16 0.12
Matches are distributed among these distances:
21 4 0.17
22 3 0.13
23 6 0.26
24 10 0.43
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (23 bp):
TTATATTAAAAATATTTTATATT
Found at i:60282617 original size:53 final size:54
Alignment explanation
Indices: 60282559--60282675 Score: 155
Period size: 53 Copynumber: 2.2 Consensus size: 54
60282549 AACATTTATT
* *
60282559 TTCAATCTCCATTCAATCCATCCAAACCTCTGCAAAACCAAATTAACA-ACATA
1 TTCAATCTCCATACAACCCATCCAAACCTCTGCAAAACCAAATTAACATACATA
* * * * *
60282612 TTCAATCTCCATACAACCCGTTCGAAGCTCTGCAAAACCAAATTTACATACATA
1 TTCAATCTCCATACAACCCATCCAAACCTCTGCAAAACCAAATTAACATACATA
*
60282666 TACAATCTCC
1 TTCAATCTCC
60282676 GTACTCCTTG
Statistics
Matches: 55, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
53 41 0.75
54 14 0.25
ACGTcount: A:0.38, C:0.32, G:0.04, T:0.26
Consensus pattern (54 bp):
TTCAATCTCCATACAACCCATCCAAACCTCTGCAAAACCAAATTAACATACATA
Found at i:60285482 original size:17 final size:18
Alignment explanation
Indices: 60285449--60285482 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
60285439 TAATGTATTT
*
60285449 ATTTTAATTATATTTAAA
1 ATTTTAATTACATTTAAA
60285467 ATTTTAA-TACATTTAA
1 ATTTTAATTACATTTAA
60285483 TTTTTATTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (18 bp):
ATTTTAATTACATTTAAA
Found at i:60290626 original size:49 final size:49
Alignment explanation
Indices: 60290569--60290696 Score: 166
Period size: 49 Copynumber: 2.6 Consensus size: 49
60290559 TGTGAGAGCT
* * * *
60290569 AGTGTAAGACCATATCTAGGATATGGCATCGGTCTCGATTTTGATAGTC
1 AGTGTAAGACCATATCTAGGACATGGCATCGGCCTCAATTTCGATAGTC
* * *
60290618 AGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCAATTTCGATAGTC
1 AGTGTAAGACCATATCTAGGACATGGCATCGGCCTCAATTTCGATAGTC
* * *
60290667 AGTGTAAGACCATGTCTGGGACATGACATC
1 AGTGTAAGACCATATCTAGGACATGGCATC
60290697 TGCATTATAC
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
49 70 1.00
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.29
Consensus pattern (49 bp):
AGTGTAAGACCATATCTAGGACATGGCATCGGCCTCAATTTCGATAGTC
Found at i:60294507 original size:19 final size:20
Alignment explanation
Indices: 60294483--60294520 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
60294473 GGTACCACCA
60294483 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
60294502 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
60294521 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:60294860 original size:93 final size:93
Alignment explanation
Indices: 60294750--60294920 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
60294740 GCCCCTAAGT
* *
60294750 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
60294815 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
60294843 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
60294908 CGAGTTCGGATGC
66 CGAGTTCGGATGC
60294921 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:60294917 original size:46 final size:46
Alignment explanation
Indices: 60294745--60294917 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
60294735 AACCCGCCCC
* * * *
60294745 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
60294791 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
60294839 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
60294884 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
60294918 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:60302578 original size:26 final size:26
Alignment explanation
Indices: 60302549--60302599 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
60302539 ATATTTGGCT
*
60302549 ATAACAAAGATAAAT-TCTAACATTTC
1 ATAAC-AACATAAATATCTAACATTTC
*
60302575 ATAACAACATAAATATTTAACATTT
1 ATAACAACATAAATATCTAACATTT
60302600 AACTATAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 8 0.36
26 14 0.64
ACGTcount: A:0.51, C:0.14, G:0.02, T:0.33
Consensus pattern (26 bp):
ATAACAACATAAATATCTAACATTTC
Found at i:60320013 original size:43 final size:43
Alignment explanation
Indices: 60319948--60320103 Score: 217
Period size: 43 Copynumber: 3.6 Consensus size: 43
60319938 GCTTGTACAT
*
60319948 TGCCAATCTCCCAGACGTGGTCTTACATGTAATCAAATATCGA
1 TGCCAATGTCCCAGACGTGGTCTTACATGTAATCAAATATCGA
* ***
60319991 TGCCACTGTCCCAGACAG-GGTCTTACACAAAATCAAATAT-GA
1 TGCCAATGTCCCAGAC-GTGGTCTTACATGTAATCAAATATCGA
* *
60320033 TGCCAATGTCCCAGACATGGTCTTACATGTAATCTCAATATCGA
1 TGCCAATGTCCCAGACGTGGTCTTACATGTAATC-AAATATCGA
60320077 TGCCAATGTCCCAGACGTGGTCTTACA
1 TGCCAATGTCCCAGACGTGGTCTTACA
60320104 CGAAAACACA
Statistics
Matches: 97, Mismatches: 12, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
42 30 0.31
43 38 0.39
44 29 0.30
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (43 bp):
TGCCAATGTCCCAGACGTGGTCTTACATGTAATCAAATATCGA
Found at i:60320103 original size:86 final size:86
Alignment explanation
Indices: 60319948--60320109 Score: 256
Period size: 85 Copynumber: 1.9 Consensus size: 86
60319938 GCTTGTACAT
* *
60319948 TGCCAATCTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAGGGTC
1 TGCCAATCTCCCAGACATGGTCTTACATGTAATCAAATATCGATGCCAATGTCCCAGACAGGGTC
60320013 TTACAC-AAAATCAAATATGA
66 TTACACGAAAATCAAATATGA
* *
60320033 TGCCAATGTCCCAGACATGGTCTTACATGTAATCTCAATATCGATGCCAATGTCCCAGAC-GTGG
1 TGCCAATCTCCCAGACATGGTCTTACATGTAATC-AAATATCGATGCCAATGTCCCAGACAG-GG
60320097 TCTTACACGAAAA
64 TCTTACACGAAAA
60320110 CACATATCGG
Statistics
Matches: 70, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
85 33 0.47
86 33 0.47
87 4 0.06
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.25
Consensus pattern (86 bp):
TGCCAATCTCCCAGACATGGTCTTACATGTAATCAAATATCGATGCCAATGTCCCAGACAGGGTC
TTACACGAAAATCAAATATGA
Found at i:60331402 original size:163 final size:162
Alignment explanation
Indices: 60331121--60331455 Score: 573
Period size: 163 Copynumber: 2.1 Consensus size: 162
60331111 AAAGCCAGGA
* *
60331121 GCCTACATGAGCGCTCCACTTCGTCAGTGGGATATTCGGGTAGATCAACAAGCTCTAAGCGACAA
1 GCCTGCATGAACGCTCCACTTCGTCAGTGGGATATTCGGGTAGATCAACAAGCTCTAAGCGACAA
**
60331186 GGTCAAAAGTCTTCCTCCTTGATGATGACTAGTGTGGGGAGTATAGATGATCAAAAAATCGAAGT
66 GGTCAAAAGTCTTCCTCCCCGATGATGACTAGTGTGGGGAGTATAGATGATC-AAAAATCGAAGT
60331251 GTAAGAGTTGCAACAAATTTCACTTCGGAGAGT
130 GTAAGAGTTGCAACAAATTTCACTTCGGAGAGT
* *
60331284 GCCTGCATGAACGCTCCACTTCGTCAGTGGGATATTCGGGTAGATCAAGAAGCTCTAAGCGACGA
1 GCCTGCATGAACGCTCCACTTCGTCAGTGGGATATTCGGGTAGATCAACAAGCTCTAAGCGACAA
* *
60331349 GGTCAAAAGTCTTCCTCCCCGATGGTGACTAGTGTGGGGAGTGTAGATGATCAAAAATCGAAGTG
66 GGTCAAAAGTCTTCCTCCCCGATGATGACTAGTGTGGGGAGTATAGATGATCAAAAATCGAAGTG
60331414 TAAGAGTTGCAACAAATTTCACTTCGGAGAGT
131 TAAGAGTTGCAACAAATTTCACTTCGGAGAGT
*
60331446 G-CTGAATGAA
1 GCCTGCATGAA
60331456 AAGCGGCGCA
Statistics
Matches: 163, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
161 8 0.05
162 46 0.28
163 109 0.67
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.24
Consensus pattern (162 bp):
GCCTGCATGAACGCTCCACTTCGTCAGTGGGATATTCGGGTAGATCAACAAGCTCTAAGCGACAA
GGTCAAAAGTCTTCCTCCCCGATGATGACTAGTGTGGGGAGTATAGATGATCAAAAATCGAAGTG
TAAGAGTTGCAACAAATTTCACTTCGGAGAGT
Found at i:60339491 original size:41 final size:41
Alignment explanation
Indices: 60339444--60339526 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
60339434 GGACTATTTT
60339444 ACCCAAATGGATAGTTATTCATGATAACAGAAATCTAGCTG
1 ACCCAAATGGATAGTTATTCATGATAACAGAAATCTAGCTG
60339485 ACCCAAATGGATAGTTATTCATGATAACAGAAATCTAGCTG
1 ACCCAAATGGATAGTTATTCATGATAACAGAAATCTAGCTG
60339526 A
1 A
60339527 AAAGCTTTAG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.40, C:0.17, G:0.17, T:0.27
Consensus pattern (41 bp):
ACCCAAATGGATAGTTATTCATGATAACAGAAATCTAGCTG
Found at i:60346110 original size:27 final size:27
Alignment explanation
Indices: 60345943--60346120 Score: 119
Period size: 27 Copynumber: 6.6 Consensus size: 27
60345933 TAAATTGTAC
*
60345943 AGCACTAAGTGTGCGA-TTCTACTT-TGT
1 AGCACTAAGTGTGCGAGTT-GA-TTATGT
* ** *
60345970 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAGTTGATTATGT
* * ** **
60345996 ATGCACTAAGAGTGCGAATTGACCATAC
1 A-GCACTAAGTGTGCGAGTTGATTATGT
* * *
60346024 GGCACTAAGTGTGCGAGTCTAACTATGT
1 AGCACTAAGTGTGCGAGT-TGATTATGT
* *
60346052 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAGTTGATTATGT
* * *
60346079 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGATTATGT
*
60346106 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
60346121 GGCTCAATAT
Statistics
Matches: 116, Mismatches: 30, Indels: 10
0.74 0.19 0.06
Matches are distributed among these distances:
26 1 0.01
27 93 0.80
28 22 0.19
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGATTATGT
Found at i:60346111 original size:82 final size:81
Alignment explanation
Indices: 60345940--60346120 Score: 204
Period size: 82 Copynumber: 2.2 Consensus size: 81
60345930 GATTAAATTG
* * * *
60345940 TACAGCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
60346005 GAGTGCGAATTGACCA
66 GAGTGCGAATTGACCA
* ** *
60346021 TACGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGAGTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
60346085 AA-ATGTGCGAGTTGATTA
64 AAGA-GTGCGAATTGACCA
* *
60346103 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
60346121 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
81 23 0.28
82 60 0.72
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GAGTGCGAATTGACCA
Found at i:60427058 original size:39 final size:40
Alignment explanation
Indices: 60427013--60427123 Score: 98
Period size: 40 Copynumber: 2.8 Consensus size: 40
60427003 CGGGGTTTAG
* * *
60427013 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
60427052 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * *
60427092 CCGGATATAGTCGCTAGCACAAATGCCTTCGG
1 CCGGATATAACCACTAGCATAAAGGCCTTCGG
60427124 ATCTTAGTCC
Statistics
Matches: 60, Mismatches: 11, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
39 15 0.25
40 45 0.75
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:60427083 original size:40 final size:40
Alignment explanation
Indices: 60427036--60427180 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
60427026 CTCGCACAAG
* * * * *
60427036 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
60427076 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
60427116 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
*
60427157 GCCTTCAGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
60427181 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:60428411 original size:37 final size:38
Alignment explanation
Indices: 60428365--60428439 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
60428355 CAAGAACTCC
60428365 TTCCTCCTTCCTTAGAA-TTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
60428402 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
60428440 AAAGGATGAA
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
37 17 0.46
38 20 0.54
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.31
Consensus pattern (38 bp):
TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
Found at i:60429559 original size:21 final size:21
Alignment explanation
Indices: 60429529--60429570 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
60429519 TTGGTGTAAA
*
60429529 AGATAATTGAGATTTAACTGG
1 AGATAATTGAGATCTAACTGG
*
60429550 AGATAGTTGAGATCTAACTGG
1 AGATAATTGAGATCTAACTGG
60429571 TTGTCTTACC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (21 bp):
AGATAATTGAGATCTAACTGG
Found at i:60436672 original size:30 final size:30
Alignment explanation
Indices: 60436632--60436695 Score: 85
Period size: 30 Copynumber: 2.1 Consensus size: 30
60436622 GCTTCTAAAT
*
60436632 CTCTTCACTTTTCTCTCAAAACTTTTACTC
1 CTCTTCACTTTTCTCCCAAAACTTTTACTC
* *
60436662 ACTCTT-ACTTTTCTCCCATAACTTTTGCTC
1 -CTCTTCACTTTTCTCCCAAAACTTTTACTC
60436692 CTCT
1 CTCT
60436696 CCCATCCCAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
29 4 0.13
30 21 0.70
31 5 0.17
ACGTcount: A:0.17, C:0.34, G:0.02, T:0.47
Consensus pattern (30 bp):
CTCTTCACTTTTCTCCCAAAACTTTTACTC
Found at i:60437155 original size:18 final size:18
Alignment explanation
Indices: 60437118--60437155 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
60437108 AAAAAATCAC
*
60437118 ATTTTTTACATTTAATAT
1 ATTTTTTACATTTAAAAT
60437136 ATTTTTTA-ATTTCAAAAT
1 ATTTTTTACATTT-AAAAT
60437154 AT
1 AT
60437156 ATAGTGGCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.58
Consensus pattern (18 bp):
ATTTTTTACATTTAAAAT
Found at i:60440401 original size:15 final size:15
Alignment explanation
Indices: 60440375--60440420 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 15
60440365 AAGTTATATG
60440375 AAATTATTAAAATTTA
1 AAATT-TTAAAATTTA
**
60440391 AAATTTTAAAAAATA
1 AAATTTTAAAATTTA
60440406 AAATTTTTAAAATTT
1 AAA-TTTTAAAATTT
60440421 TTATATAATA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
15 11 0.44
16 14 0.56
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (15 bp):
AAATTTTAAAATTTA
Found at i:60440498 original size:17 final size:16
Alignment explanation
Indices: 60440476--60440522 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 16
60440466 ATTTTTATAT
60440476 ATAAAAATATTATAAAA
1 ATAAAAA-ATTATAAAA
*
60440493 ATAAAAAATTGTAAAA
1 ATAAAAAATTATAAAA
*
60440509 TTATAAAAATTATA
1 ATA-AAAAATTATA
60440523 TTAAAAAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
16 10 0.38
17 16 0.62
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (16 bp):
ATAAAAAATTATAAAA
Found at i:60440514 original size:18 final size:18
Alignment explanation
Indices: 60440474--60440518 Score: 58
Period size: 16 Copynumber: 2.6 Consensus size: 18
60440464 TAATTTTTAT
60440474 ATATAAAAATATTATAAA
1 ATATAAAAATATTATAAA
*
60440492 A-ATAAAAA-ATTGTAAA
1 ATATAAAAATATTATAAA
60440508 ATTATAAAAAT
1 A-TATAAAAAT
60440519 TATATTAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
16 8 0.35
17 7 0.30
18 8 0.35
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (18 bp):
ATATAAAAATATTATAAA
Found at i:60445550 original size:28 final size:29
Alignment explanation
Indices: 60445485--60445557 Score: 96
Period size: 28 Copynumber: 2.6 Consensus size: 29
60445475 GTTGTGAGAT
*
60445485 TGGCACTAGGTGTGCGAACTTGAAATGCA
1 TGGCACTAAGTGTGCGAACTTGAAATGCA
* *
60445514 TGGCACTAAGTGTGCG-AGTTTAAA-GACA
1 TGGCACTAAGTGTGCGAACTTGAAATG-CA
60445542 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
60445558 CGGTTGATTA
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
27 1 0.03
28 24 0.60
29 15 0.38
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAACTTGAAATGCA
Found at i:60455214 original size:26 final size:27
Alignment explanation
Indices: 60455166--60455233 Score: 75
Period size: 26 Copynumber: 2.6 Consensus size: 27
60455156 TGTAGCGTAG
60455166 AATTACTGAAATACCATTAGTTTACAA
1 AATTACTGAAATACCATTAGTTTACAA
* * * *
60455193 AATTATTG-AATACCCTTGGTTTTCAA
1 AATTACTGAAATACCATTAGTTTACAA
**
60455219 AATTACCAAAATACC
1 AATTACTGAAATACC
60455234 CTCGATTAGC
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
26 20 0.61
27 13 0.39
ACGTcount: A:0.41, C:0.18, G:0.07, T:0.34
Consensus pattern (27 bp):
AATTACTGAAATACCATTAGTTTACAA
Found at i:60455246 original size:27 final size:27
Alignment explanation
Indices: 60455201--60455478 Score: 174
Period size: 27 Copynumber: 10.3 Consensus size: 27
60455191 AAAATTATTG
* * *
60455201 AATACCCTTGGTTTTCAAAATTACCAA
1 AATACCCTCGATTTGCAAAATTACCAA
*
60455228 AATACCCTCGATTAGCAAAATTACCAA
1 AATACCCTCGATTTGCAAAATTACCAA
* * *
60455255 AATACCC-CTGGTTTGTAAAATTACTAA
1 AATACCCTC-GATTTGCAAAATTACCAA
* * **
60455282 AATAACCT-AATTTGTGAAATTA-CAGA
1 AATACCCTCGATTTGCAAAATTACCA-A
* *
60455308 AATACCCTCGATTTGAAAAATTGCCAA
1 AATACCCTCGATTTGCAAAATTACCAA
* *
60455335 AATACCCTTGATTTAG-AAAATTACAAA
1 AATACCCTCGATTT-GCAAAATTACCAA
* *
60455362 AATACCC-CTAATTTACAAAATTA-CAGA
1 AATACCCTC-GATTTGCAAAATTACCA-A
* * *
60455389 AATAACCTTGACTTT-CAAAAATTACAAA
1 AATACCCTCGA-TTTGC-AAAATTACCAA
* * * *
60455417 AATACCATTGGTTTGCAAAATTATCAA
1 AATACCCTCGATTTGCAAAATTACCAA
* * * * *
60455444 AATACCCTTGGTTTGTAGATTTACCAA
1 AATACCCTCGATTTGCAAAATTACCAA
*
60455471 AACACCCT
1 AATACCCT
60455479 TGTAGGGTGA
Statistics
Matches: 197, Mismatches: 40, Indels: 28
0.74 0.15 0.11
Matches are distributed among these distances:
25 1 0.01
26 21 0.11
27 151 0.77
28 23 0.12
29 1 0.01
ACGTcount: A:0.42, C:0.20, G:0.09, T:0.29
Consensus pattern (27 bp):
AATACCCTCGATTTGCAAAATTACCAA
Found at i:60455277 original size:54 final size:55
Alignment explanation
Indices: 60455201--60455453 Score: 214
Period size: 54 Copynumber: 4.7 Consensus size: 55
60455191 AAAATTATTG
* * * *
60455201 AATACCCTTGGTTTTCAAAATTACCAAAATACCCTCGA-TTAGCAAAATTACCAA
1 AATACCCCTGGTTTGCAAAATTACCAAAATACCCTTGACTTAGCAAAATTACAAA
* * * * * ** *
60455255 AATACCCCTGGTTTGTAAAATTACTAAAATAACC-T-AATTTGTGAAATTACAGA
1 AATACCCCTGGTTTGCAAAATTACCAAAATACCCTTGACTTAGCAAAATTACAAA
* * * *
60455308 AATA-CCCTCGATTTGAAAAATTGCCAAAATACCCTTGATTTAG-AAAATTACAAA
1 AATACCCCT-GGTTTGCAAAATTACCAAAATACCCTTGACTTAGCAAAATTACAAA
** * * *
60455362 AATACCCCTAATTTACAAAATTA-CAGAAATAACCTTGACTT-TCAAAAATTACAAA
1 AATACCCCTGGTTTGCAAAATTACCA-AAATACCCTTGACTTAGC-AAAATTACAAA
** *
60455417 AATACCATTGGTTTGCAAAATTATCAAAATACCCTTG
1 AATACCCCTGGTTTGCAAAATTACCAAAATACCCTTG
60455454 GTTTGTAGAT
Statistics
Matches: 157, Mismatches: 33, Indels: 17
0.76 0.16 0.08
Matches are distributed among these distances:
52 5 0.03
53 37 0.24
54 66 0.42
55 47 0.30
56 2 0.01
ACGTcount: A:0.43, C:0.19, G:0.08, T:0.29
Consensus pattern (55 bp):
AATACCCCTGGTTTGCAAAATTACCAAAATACCCTTGACTTAGCAAAATTACAAA
Found at i:60455302 original size:80 final size:81
Alignment explanation
Indices: 60455218--60455422 Score: 227
Period size: 80 Copynumber: 2.5 Consensus size: 81
60455208 TTGGTTTTCA
* * *
60455218 AAATTACCA-AAATACCCTCGATTAGCAAAATTACCAAAATACCCCTGGTTT-GTAAAATTACTA
1 AAATTA-CAGAAATACCCTCGATTAGAAAAATTACCAAAATACCCCTGATTTAG-AAAATTACAA
60455281 AAATA-ACCTAATTTGTG
64 AAATACACCTAATTTGTG
* * *
60455298 AAATTACAGAAATACCCTCGATTTGAAAAATTGCCAAAATACCCTTGATTTAGAAAATTACAAAA
1 AAATTACAGAAATACCCTCGATTAGAAAAATTACCAAAATACCCCTGATTTAGAAAATTACAAAA
* ***
60455363 ATACCCCTAATTTACA
66 ATACACCTAATTTGTG
* * ** *
60455379 AAATTACAGAAATAACCTTGACTTTCAAAAATTACAAAAATACC
1 AAATTACAGAAATACCCTCGA-TTAGAAAAATTACCAAAATACC
60455423 ATTGGTTTGC
Statistics
Matches: 106, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
79 2 0.02
80 57 0.54
81 28 0.26
82 19 0.18
ACGTcount: A:0.46, C:0.20, G:0.07, T:0.27
Consensus pattern (81 bp):
AAATTACAGAAATACCCTCGATTAGAAAAATTACCAAAATACCCCTGATTTAGAAAATTACAAAA
ATACACCTAATTTGTG
Found at i:60455328 original size:107 final size:109
Alignment explanation
Indices: 60455217--60455451 Score: 271
Period size: 107 Copynumber: 2.2 Consensus size: 109
60455207 CTTGGTTTTC
* ** **
60455217 AAAATTACCAAAATACCCTCGA-TTAGCAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTA
1 AAAATTACCAAAATACCCTCGATTTAG-AAAATTACAAAAATACCCCTAATTTACAAAATTAC-A
*** * *
60455281 -AAATAACC-T-AATTTGTGAAATTACAGAAATACCCTCGATTTGA
64 GAAATAACCTTGAATTTCAAAAATTACAAAAATACCATCGATTTGA
* *
60455324 AAAATTGCCAAAATACCCTTGATTTAGAAAATTACAAAAATACCCCTAATTTACAAAATTACAGA
1 AAAATTACCAAAATACCCTCGATTTAGAAAATTACAAAAATACCCCTAATTTACAAAATTACAGA
* * * *
60455389 AATAACCTTGACTTTCAAAAATTACAAAAATACCATTGGTTTGC
66 AATAACCTTGAATTTCAAAAATTACAAAAATACCATCGATTTGA
*
60455433 AAAATTATCAAAATACCCT
1 AAAATTACCAAAATACCCT
60455452 TGGTTTGTAG
Statistics
Matches: 106, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
106 1 0.01
107 58 0.55
108 5 0.05
109 42 0.40
ACGTcount: A:0.45, C:0.19, G:0.08, T:0.28
Consensus pattern (109 bp):
AAAATTACCAAAATACCCTCGATTTAGAAAATTACAAAAATACCCCTAATTTACAAAATTACAGA
AATAACCTTGAATTTCAAAAATTACAAAAATACCATCGATTTGA
Found at i:60455763 original size:41 final size:41
Alignment explanation
Indices: 60455718--60455840 Score: 210
Period size: 41 Copynumber: 3.0 Consensus size: 41
60455708 GAAGGAAGAA
60455718 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
*
60455759 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCGACCG
1 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
* * *
60455800 ATTAAGGATCGCATGGTTGCTTGACGACTGTGGATCTACCG
1 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
60455841 GTGGCTTTTA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 78 1.00
ACGTcount: A:0.20, C:0.22, G:0.32, T:0.26
Consensus pattern (41 bp):
ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
Found at i:60456031 original size:22 final size:22
Alignment explanation
Indices: 60455997--60456043 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 22
60455987 TGCTTTGCGG
60455997 CAACCTACATATGGCTCTGTGC
1 CAACCTACATATGGCTCTGTGC
*
60456019 CAACCTGAC-TATGGCTGTGTGC
1 CAACCT-ACATATGGCTCTGTGC
60456041 CAA
1 CAA
60456044 ACGTATTTGC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 21 0.91
23 2 0.09
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (22 bp):
CAACCTACATATGGCTCTGTGC
Found at i:60459026 original size:27 final size:27
Alignment explanation
Indices: 60459008--60459076 Score: 102
Period size: 27 Copynumber: 2.6 Consensus size: 27
60458998 GTTGGCTAGT
60459008 ATTACTAAAATACCCCTGTAGGGTAGA
1 ATTACTAAAATACCCCTGTAGGGTAGA
* ** *
60459035 ATTACTGAAATGTCCCTATAGGGTAGA
1 ATTACTAAAATACCCCTGTAGGGTAGA
60459062 ATTACTAAAATACCC
1 ATTACTAAAATACCC
60459077 TTAGTTTACA
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.28
Consensus pattern (27 bp):
ATTACTAAAATACCCCTGTAGGGTAGA
Found at i:60459093 original size:27 final size:27
Alignment explanation
Indices: 60459063--60459182 Score: 100
Period size: 27 Copynumber: 4.5 Consensus size: 27
60459053 TAGGGTAGAA
*
60459063 TTACTAAAATACCCTTAGTTTACAAAT
1 TTACCAAAATACCCTTAGTTTACAAAT
** * *
60459090 TTA-CTGAATACCCTTGGTTTACAAAA
1 TTACCAAAATACCCTTAGTTTACAAAT
* * *
60459116 TTACCAACATACCC-TCGATTAGCAAAT
1 TTACCAAAATACCCTTAGTTTA-CAAAT
* * ** *
60459143 TTACCAAAATACCCCTGGTTTGTAAAA
1 TTACCAAAATACCCTTAGTTTACAAAT
60459170 TTACCAAAATACC
1 TTACCAAAATACC
60459183 TTGATTTGTG
Statistics
Matches: 73, Mismatches: 17, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
26 26 0.36
27 43 0.59
28 4 0.05
ACGTcount: A:0.38, C:0.23, G:0.07, T:0.31
Consensus pattern (27 bp):
TTACCAAAATACCCTTAGTTTACAAAT
Found at i:60459185 original size:80 final size:79
Alignment explanation
Indices: 60459061--60459373 Score: 213
Period size: 80 Copynumber: 3.9 Consensus size: 79
60459051 TATAGGGTAG
* * * ** * * * * *
60459061 AATTACTAAAATACCCTTAGTTTACAAATTTACTG-AATACCCTTGGTTTACAAAATTACCAACA
1 AATTACCAAAATACCCCTAATTTGGAAAATTACAGAAATA-CCTTGATTTGCAAAATTA-CAAAA
60459125 TACCCTCGATTAGCAA
64 TACCCTCGATTAGCAA
* ** * ** *
60459141 ATTTACCAAAATACCCCTGGTTTGTAAAATTACCA-AAATACCTTGATTTGTGAAATTATCGAAA
1 AATTACCAAAATACCCCTAATTTGGAAAATTA-CAGAAATACCTTGATTTGCAAAATTA-CAAAA
* *
60459205 TACCCTCGATTTGTAA
64 TACCCTCGATTAGCAA
* *
60459221 AATTACCAGAATACCCCTAATTTGGAAAATTACAGAAATACCATTGATTTGGAAAATTACAAAAA
1 AATTACCAAAATACCCCTAATTTGGAAAATTACAGAAATACC-TTGATTTGCAAAATTAC-AAAA
60459286 TACCC-CTGATTTA-CAA
64 TACCCTC-GA-TTAGCAA
* * * * ** * * *
60459302 AATTA-TAGAAATACTCTTGACTTTCAAAAATTATAGAAATACCATTGGTTTGCAAAATTATCGA
1 AATTACCA-AAATACCCCT-AATTTGGAAAATTACAGAAATACC-TTGATTTGCAAAATTA-CAA
60459366 AATACCCT
62 AATACCCT
60459374 TGGTTTGTAG
Statistics
Matches: 184, Mismatches: 38, Indels: 19
0.76 0.16 0.08
Matches are distributed among these distances:
79 2 0.01
80 93 0.51
81 43 0.23
82 45 0.24
83 1 0.01
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (79 bp):
AATTACCAAAATACCCCTAATTTGGAAAATTACAGAAATACCTTGATTTGCAAAATTACAAAATA
CCCTCGATTAGCAA
Found at i:60459223 original size:27 final size:27
Alignment explanation
Indices: 60459124--60459382 Score: 127
Period size: 27 Copynumber: 9.6 Consensus size: 27
60459114 AATTACCAAC
* * * * *
60459124 ATACCCTCGATTAGCAAATTTACCAAA
1 ATACCCTCGATTTGTAAAATTATCGAA
* * *
60459151 ATACCC-CTGGTTTGTAAAATTACCAAA
1 ATACCCTC-GATTTGTAAAATTATCGAA
* *
60459178 ATA-CCTTGATTTGTGAAATTATCGAA
1 ATACCCTCGATTTGTAAAATTATCGAA
*
60459204 ATACCCTCGATTTGTAAAATTA-CCAGA
1 ATACCCTCGATTTGTAAAATTATCGA-A
* *
60459231 ATACCC-CTAATTTGGAAAATTA-CAGAA
1 ATACCCTC-GATTTGTAAAATTATC-GAA
* * * *
60459258 ATACCATTGATTTGGAAAATTA-CAAAA
1 ATACCCTCGATTTGTAAAATTATC-GAA
** *
60459285 ATACCC-CTGATTTACAAAATTATAGAA
1 ATACCCTC-GATTTGTAAAATTATCGAA
* * ** *
60459312 ATACTCTTGACTTTCAAAAATTATAGAA
1 ATACCCTCGA-TTTGTAAAATTATCGAA
* * * *
60459340 ATACCATTGGTTTGCAAAATTATCGAA
1 ATACCCTCGATTTGTAAAATTATCGAA
* *
60459367 ATACCCTTGGTTTGTA
1 ATACCCTCGATTTGTA
60459383 GATTTACCAA
Statistics
Matches: 184, Mismatches: 37, Indels: 22
0.76 0.15 0.09
Matches are distributed among these distances:
26 24 0.13
27 137 0.74
28 23 0.12
ACGTcount: A:0.39, C:0.18, G:0.11, T:0.32
Consensus pattern (27 bp):
ATACCCTCGATTTGTAAAATTATCGAA
Found at i:60459304 original size:54 final size:53
Alignment explanation
Indices: 60459061--60459400 Score: 224
Period size: 54 Copynumber: 6.3 Consensus size: 53
60459051 TATAGGGTAG
* * * * * **
60459061 AATTACTAAAATACCCTTAGTTTACAAATTTACTG-AATACCCTTGGTTTACAA
1 AATTACCAAAATACCCTGA-TTTACAAAATTACAGAAATACCCTTGATTTGTAA
* * * *
60459114 AATTACCAACATACCCTCGA-TTAGCAAATTTACCA-AAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCT-GATTTA-CAAAATTA-CAGAAATACCCTTGATTTGTAA
* *** *
60459168 AATTACCAAAATACCTTGATTTGTGAAATTATC-GAAATACCCTCGATTTGTAA
1 AATTACCAAAATACCCTGATTTACAAAATTA-CAGAAATACCCTTGATTTGTAA
* * ** * *
60459221 AATTACCAGAATACCCCTAATTTGGAAAATTACAGAAATACCATTGATTTGGAA
1 AATTACCAAAATA-CCCTGATTTACAAAATTACAGAAATACCCTTGATTTGTAA
* * * **
60459275 AATTACAAAAATACCCCTGATTTACAAAATTATAGAAATACTCTTGACTTTCAAA
1 AATTACCAAAATA-CCCTGATTTACAAAATTACAGAAATACCCTTGA-TTTGTAA
* * * * * *
60459330 AATTA-TAGAAATACCATTGGTTTGCAAAATTATC-GAAATACCCTTGGTTTGTAG
1 AATTACCA-AAATACC-CTGATTTACAAAATTA-CAGAAATACCCTTGATTTGTAA
* *
60459384 ATTTACCAAAACACCCT
1 AATTACCAAAATACCCT
60459401 TGTAGGGTGA
Statistics
Matches: 225, Mismatches: 49, Indels: 26
0.75 0.16 0.09
Matches are distributed among these distances:
52 3 0.01
53 61 0.27
54 121 0.54
55 40 0.18
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.31
Consensus pattern (53 bp):
AATTACCAAAATACCCTGATTTACAAAATTACAGAAATACCCTTGATTTGTAA
Found at i:60460137 original size:22 final size:22
Alignment explanation
Indices: 60460094--60460138 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
60460084 AATGTTTACT
* * *
60460094 GCTATGTGCTGTCTTGTTTACA
1 GCTATGTGCTATCCTGTCTACA
60460116 GCTATGTGCTATCCTGTCTACA
1 GCTATGTGCTATCCTGTCTACA
60460138 G
1 G
60460139 TGTTGAGTCG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.16, C:0.22, G:0.22, T:0.40
Consensus pattern (22 bp):
GCTATGTGCTATCCTGTCTACA
Found at i:60468413 original size:21 final size:21
Alignment explanation
Indices: 60468341--60468413 Score: 56
Period size: 21 Copynumber: 3.4 Consensus size: 21
60468331 CTCTAGCATA
* *
60468341 GGCGTGCCCTAGGGTCACATG
1 GGCGTGTCCTAGGGTCACACG
* * * **
60468362 GGTGTGCGCCTTGGACCACACG
1 GGCGTG-TCCTAGGGTCACACG
* *
60468384 GGAGCGTCCTAGGGTCACACG
1 GGCGTGTCCTAGGGTCACACG
60468405 GGCGTGTCC
1 GGCGTGTCC
60468414 CTTGGACCAC
Statistics
Matches: 37, Mismatches: 14, Indels: 2
0.70 0.26 0.04
Matches are distributed among these distances:
21 23 0.62
22 14 0.38
ACGTcount: A:0.14, C:0.30, G:0.38, T:0.18
Consensus pattern (21 bp):
GGCGTGTCCTAGGGTCACACG
Found at i:60471456 original size:16 final size:16
Alignment explanation
Indices: 60471435--60471466 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
60471425 ATCCACCCTA
60471435 TAGTCACTATATTTAG
1 TAGTCACTATATTTAG
60471451 TAGTCACTATATTTAG
1 TAGTCACTATATTTAG
60471467 GAGGATTCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.12, G:0.12, T:0.44
Consensus pattern (16 bp):
TAGTCACTATATTTAG
Found at i:60473082 original size:30 final size:30
Alignment explanation
Indices: 60472995--60473088 Score: 102
Period size: 30 Copynumber: 3.1 Consensus size: 30
60472985 TCATACAACC
60472995 GTGTGCTTCACACGGCTAAGACACACGGCCAT
1 GTGTGCTTCACACGGCTAAGACACAC-GCC-T
* * **
60473027 GTG-CCTT-ACACGGTTGGGACACACGCCT
1 GTGTGCTTCACACGGCTAAGACACACGCCT
* *
60473055 GTGTGCTTCATACGGCTAAGACTCACGCCT
1 GTGTGCTTCACACGGCTAAGACACACGCCT
60473085 GTGT
1 GTGT
60473089 CTTAGGCCGC
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
28 4 0.08
29 6 0.12
30 34 0.68
31 3 0.06
32 3 0.06
ACGTcount: A:0.20, C:0.30, G:0.27, T:0.23
Consensus pattern (30 bp):
GTGTGCTTCACACGGCTAAGACACACGCCT
Found at i:60481003 original size:18 final size:18
Alignment explanation
Indices: 60480980--60481018 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
60480970 TTATATATAT
60480980 ATGTGTGATTGTTCGTAA
1 ATGTGTGATTGTTCGTAA
** *
60480998 ATGTGTTTTTGTTTGTAA
1 ATGTGTGATTGTTCGTAA
60481016 ATG
1 ATG
60481019 CCTCATAACC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.21, C:0.03, G:0.26, T:0.51
Consensus pattern (18 bp):
ATGTGTGATTGTTCGTAA
Found at i:60486935 original size:27 final size:27
Alignment explanation
Indices: 60486904--60487081 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
60486894 TAAATTGTAC
*
60486904 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
60486931 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
60486957 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
60486985 GGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
60487012 AGCACTAAGTGTGCGAGTTTGATTACGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * *
60487040 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
60487067 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
60487082 GACTCAATAT
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 104 0.81
28 24 0.19
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:60486965 original size:54 final size:55
Alignment explanation
Indices: 60486904--60487081 Score: 218
Period size: 54 Copynumber: 3.3 Consensus size: 55
60486894 TAAATTGTAC
* **
60486904 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
* * ** *
60486959 -GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTGACTATG-T
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
* * *
60487012 AGCACTAAGTGTGCGAGTTTGATTACGTAGCACTAAGTGTGCGAGTTGATTAT-AT
1 AGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
*
60487067 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
60487082 GACTCAATAT
Statistics
Matches: 105, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
53 1 0.01
54 60 0.57
55 44 0.42
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (55 bp):
AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
Found at i:60494982 original size:27 final size:27
Alignment explanation
Indices: 60494948--60495123 Score: 194
Period size: 27 Copynumber: 6.6 Consensus size: 27
60494938 TAAATTGTAC
*
60494948 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
60494975 TGCACTAAGTGTGCGAAATGA-AATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
60495000 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
60495028 GGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
60495055 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
60495082 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
60495109 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
60495124 GACTCAATAT
Statistics
Matches: 127, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
26 22 0.17
27 105 0.83
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:60503027 original size:27 final size:27
Alignment explanation
Indices: 60502996--60503172 Score: 203
Period size: 27 Copynumber: 6.6 Consensus size: 27
60502986 TAAATTGTAC
*
60502996 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
60503023 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
60503049 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
60503077 GGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
60503104 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
60503131 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
60503158 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
60503173 GACTCAATAT
Statistics
Matches: 128, Mismatches: 20, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
27 128 1.00
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:60503057 original size:54 final size:55
Alignment explanation
Indices: 60502996--60503172 Score: 225
Period size: 54 Copynumber: 3.3 Consensus size: 55
60502986 TAAATTGTAC
* **
60502996 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
* * ** *
60503051 -GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTGACTATG-T
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
* * *
60503104 AGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGAGTTGATTAT-AT
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
*
60503158 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
60503173 GACTCAATAT
Statistics
Matches: 105, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
53 1 0.01
54 104 0.99
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (55 bp):
AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
Found at i:60503136 original size:81 final size:81
Alignment explanation
Indices: 60502997--60503151 Score: 231
Period size: 81 Copynumber: 1.9 Consensus size: 81
60502987 AAATTGTACA
* * *
60502997 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
60503062 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
** *
60503078 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACTAAGTG
1 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAGTG
*
60503142 TGCGAGTTGA
65 TGCGAATTGA
60503152 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
80 1 0.02
81 65 0.98
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:60503163 original size:81 final size:81
Alignment explanation
Indices: 60502993--60503172 Score: 227
Period size: 81 Copynumber: 2.2 Consensus size: 81
60502983 GATTAAATTG
* * *
60502993 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
60503058 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
60503074 TGCGGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACTA
1 TACAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTA
* **
60503138 AGTGTGCGAGTTGATTA
65 AGTGTGCGAATTGACCA
* *
60503155 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
60503173 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
80 1 0.01
81 82 0.99
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:60520134 original size:43 final size:43
Alignment explanation
Indices: 60520029--60520115 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
60520019 AATTATTAAG
60520029 ATAAACATAAAATAAAAATTGAAATTAAATTAATCCTAATTCT
1 ATAAACATAAAATAAAAATTGAAATTAAATTAATCCTAATTCT
60520072 ATAAACATAAAATAAAAATTGAAATTAAATTAATCCTAATTCT
1 ATAAACATAAAATAAAAATTGAAATTAAATTAATCCTAATTCT
60520115 A
1 A
60520116 ATTTAAGTTG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.56, C:0.09, G:0.02, T:0.32
Consensus pattern (43 bp):
ATAAACATAAAATAAAAATTGAAATTAAATTAATCCTAATTCT
Found at i:60528214 original size:40 final size:40
Alignment explanation
Indices: 60528155--60528236 Score: 155
Period size: 40 Copynumber: 2.0 Consensus size: 40
60528145 AAAGTGCAAG
*
60528155 TTAGGTTCGGCCTTGGTTTTCTTTAATTAAGGTATGGGTT
1 TTAGGTTCGGCCTTAGTTTTCTTTAATTAAGGTATGGGTT
60528195 TTAGGTTCGGCCTTAGTTTTCTTTAATTAAGGTATGGGTT
1 TTAGGTTCGGCCTTAGTTTTCTTTAATTAAGGTATGGGTT
60528235 TT
1 TT
60528237 GTTCGGGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.16, C:0.10, G:0.26, T:0.49
Consensus pattern (40 bp):
TTAGGTTCGGCCTTAGTTTTCTTTAATTAAGGTATGGGTT
Found at i:60536843 original size:37 final size:37
Alignment explanation
Indices: 60536793--60536868 Score: 143
Period size: 37 Copynumber: 2.1 Consensus size: 37
60536783 ACAAGTTTGG
*
60536793 TTCGAATTGGGTAATTATGGAACATGTTCAATTGGGT
1 TTCGAATTGGGTAATTATGGAACAAGTTCAATTGGGT
60536830 TTCGAATTGGGTAATTATGGAACAAGTTCAATTGGGT
1 TTCGAATTGGGTAATTATGGAACAAGTTCAATTGGGT
60536867 TT
1 TT
60536869 TGATGTATGT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.28, C:0.08, G:0.26, T:0.38
Consensus pattern (37 bp):
TTCGAATTGGGTAATTATGGAACAAGTTCAATTGGGT
Found at i:60537649 original size:49 final size:49
Alignment explanation
Indices: 60537580--60537689 Score: 148
Period size: 49 Copynumber: 2.2 Consensus size: 49
60537570 ATGTTTGCAA
* * * *
60537580 ATCTGGTAGCTTTACTACAATATTATGTATCTGGCAATTTGACTACATT
1 ATCTGGTGGCTTGACCACAATATTATGTATCTGGCAACTTGACTACATT
* * **
60537629 ATCTGGTGGCTTGACCACAATATTCTGTATCTGGCAACTTGTCTGTATT
1 ATCTGGTGGCTTGACCACAATATTATGTATCTGGCAACTTGACTACATT
60537678 ATCTGGTGGCTT
1 ATCTGGTGGCTT
60537690 ATCCATATTA
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
49 53 1.00
ACGTcount: A:0.23, C:0.18, G:0.19, T:0.40
Consensus pattern (49 bp):
ATCTGGTGGCTTGACCACAATATTATGTATCTGGCAACTTGACTACATT
Found at i:60544716 original size:48 final size:48
Alignment explanation
Indices: 60544641--60544793 Score: 209
Period size: 48 Copynumber: 3.2 Consensus size: 48
60544631 CACATGGTAG
* * *
60544641 GATGCCAATGCCATAT-CTCAGATATGGTCTTACATGGGATCACATATT
1 GATGCCAATGCCATGTCCT-AGACATGGTCTTACATGGGATCACATATC
* ** *
60544689 GATGCCAATGCCATGTCCTAGACATGGTCTTACGTGGGATCGTAGATC
1 GATGCCAATGCCATGTCCTAGACATGGTCTTACATGGGATCACATATC
*
60544737 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATGTCCTAGACATGGTCTTACATGGGATCACATATC
*
60544785 GATGTCAAT
1 GATGCCAAT
60544794 AGCCCAGCTA
Statistics
Matches: 91, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
48 89 0.98
49 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (48 bp):
GATGCCAATGCCATGTCCTAGACATGGTCTTACATGGGATCACATATC
Found at i:60570531 original size:20 final size:20
Alignment explanation
Indices: 60570506--60570558 Score: 106
Period size: 20 Copynumber: 2.6 Consensus size: 20
60570496 GGGAGGCAAA
60570506 GCACACGCCCGTGTGCTTAG
1 GCACACGCCCGTGTGCTTAG
60570526 GCACACGCCCGTGTGCTTAG
1 GCACACGCCCGTGTGCTTAG
60570546 GCACACGCCCGTG
1 GCACACGCCCGTG
60570559 AGTTTCACCC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.15, C:0.38, G:0.30, T:0.17
Consensus pattern (20 bp):
GCACACGCCCGTGTGCTTAG
Found at i:60576664 original size:7 final size:7
Alignment explanation
Indices: 60576652--60576683 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
60576642 ACATTTCTAA
60576652 TCATCCC
1 TCATCCC
60576659 TCATCCC
1 TCATCCC
*
60576666 TCGTCCC
1 TCATCCC
60576673 TCATCCC
1 TCATCCC
60576680 TCAT
1 TCAT
60576684 TCATTCTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.12, C:0.53, G:0.03, T:0.31
Consensus pattern (7 bp):
TCATCCC
Found at i:60584946 original size:29 final size:29
Alignment explanation
Indices: 60584913--60584986 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
60584903 GTTGTGAGAT
* *
60584913 TGGCACTAGGTGTGCGAACTTGAAA-TGCA
1 TGGCACTAAGTGTGCG-ACTTGAAAGTACA
* *
60584942 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGACTTGAAAGTACA
60584971 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
60584987 CGGTTGATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 6 0.15
29 34 0.85
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGACTTGAAAGTACA
Found at i:60595107 original size:105 final size:105
Alignment explanation
Indices: 60594979--60595189 Score: 395
Period size: 105 Copynumber: 2.0 Consensus size: 105
60594969 ACGGATTGCT
*
60594979 AGCAGTGATTTTAGTGATGCTAGCTCAGAAATATGTGAGAAAGGGTTGCGAAGCTTATTTAGCTT
1 AGCAGTGATTTTAGTGATGCTAGCTCAGAAATATGTGAGAAAGGGTTGCAAAGCTTATTTAGCTT
60595044 ATGTGCTTGACATGAAACTGACTGAAAAGAAAGTTGAATC
66 ATGTGCTTGACATGAAACTGACTGAAAAGAAAGTTGAATC
60595084 AGCAGTGATTTTAGTGATGCTAGCTCAGAAATATGTGAGAAAGGGTTGCAAAGCTTATTTAGCTT
1 AGCAGTGATTTTAGTGATGCTAGCTCAGAAATATGTGAGAAAGGGTTGCAAAGCTTATTTAGCTT
* *
60595149 ATGTGCTTGACATGAAAGTGATTGAAAAGAAAGTTGAATC
66 ATGTGCTTGACATGAAACTGACTGAAAAGAAAGTTGAATC
60595189 A
1 A
60595190 ATGCCTATTG
Statistics
Matches: 103, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
105 103 1.00
ACGTcount: A:0.34, C:0.10, G:0.26, T:0.30
Consensus pattern (105 bp):
AGCAGTGATTTTAGTGATGCTAGCTCAGAAATATGTGAGAAAGGGTTGCAAAGCTTATTTAGCTT
ATGTGCTTGACATGAAACTGACTGAAAAGAAAGTTGAATC
Found at i:60599134 original size:57 final size:57
Alignment explanation
Indices: 60599070--60599185 Score: 223
Period size: 57 Copynumber: 2.0 Consensus size: 57
60599060 CGAGGGAAAT
*
60599070 CGAAGGTTACGAGTAAATGATCTGAATTATCAATTCTGAGTACGAGGTAAGTTCGTA
1 CGAAGGTTACGAGTAAATGATCCGAATTATCAATTCTGAGTACGAGGTAAGTTCGTA
60599127 CGAAGGTTACGAGTAAATGATCCGAATTATCAATTCTGAGTACGAGGTAAGTTCGTA
1 CGAAGGTTACGAGTAAATGATCCGAATTATCAATTCTGAGTACGAGGTAAGTTCGTA
60599184 CG
1 CG
60599186 TGATAAATGA
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 58 1.00
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (57 bp):
CGAAGGTTACGAGTAAATGATCCGAATTATCAATTCTGAGTACGAGGTAAGTTCGTA
Found at i:60599374 original size:40 final size:41
Alignment explanation
Indices: 60599283--60599379 Score: 119
Period size: 40 Copynumber: 2.4 Consensus size: 41
60599273 CAACTATGTT
60599283 TGGCACTAAGTGTGCG-ATTCAAAATAGCTTCGGCTATAAA
1 TGGCACTAAGTGTGCGAATTCAAAATAGCTTCGGCTATAAA
* * ** *
60599323 TTGCACAAAGTGTGCGAATT-GGAATAGCTTCGGCTATACGA
1 TGGCACTAAGTGTGCGAATTCAAAATAGCTTCGGCTATA-AA
60599364 -GGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
60599380 TACCAAGATA
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
40 44 0.92
41 4 0.08
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.26
Consensus pattern (41 bp):
TGGCACTAAGTGTGCGAATTCAAAATAGCTTCGGCTATAAA
Found at i:60602283 original size:27 final size:26
Alignment explanation
Indices: 60602246--60602305 Score: 102
Period size: 27 Copynumber: 2.3 Consensus size: 26
60602236 AGCATGGCTG
60602246 CCAGAACAGATATTGTGACAGAGCCA
1 CCAGAACAGATATTGTGACAGAGCCA
*
60602272 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGACAGAGCCA
60602299 CCAGAAC
1 CCAGAAC
60602306 GCTTCCTCTA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
26 7 0.22
27 25 0.78
ACGTcount: A:0.37, C:0.25, G:0.23, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATATTGTGACAGAGCCA
Found at i:60617583 original size:18 final size:17
Alignment explanation
Indices: 60617553--60617591 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
60617543 TAAATACTTT
* *
60617553 TTTTTTATTTTTTATAA
1 TTTTTAATTTTTTAAAA
60617570 TTTTTAATTATTTTAAAA
1 TTTTTAATT-TTTTAAAA
60617588 TTTT
1 TTTT
60617592 AAAAAATATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 8 0.42
18 11 0.58
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (17 bp):
TTTTTAATTTTTTAAAA
Found at i:60620752 original size:49 final size:49
Alignment explanation
Indices: 60620680--60620907 Score: 240
Period size: 49 Copynumber: 4.6 Consensus size: 49
60620670 ATTTGGTATG
* * * *
60620680 CATAGCAGCCTACACTTAGTACTACACATGCGACCAATTATCCAGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACA
* ** ** *
60620729 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATTTGATACA
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACC-AATTATCCGGTACA
* ** * * **
60620779 CGTAGTAGCCTGCACTTAGTACTACACACATGATCGAAGTTATCGGGTAGG
1 CATAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCCGGTACA
* *
60620830 CATAGTAGCTTGCACTTAGTACTACACATGCGACCAATTATCCGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACA
* *
60620879 CGTAGTAGCCTACACTTAGTACTACACAC
1 CATAGTAGCCTGCACTTAGTACTACACAC
60620908 ATGACCTCAC
Statistics
Matches: 143, Mismatches: 33, Indels: 6
0.79 0.18 0.03
Matches are distributed among these distances:
49 65 0.45
50 44 0.31
51 34 0.24
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (49 bp):
CATAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACA
Found at i:60620756 original size:26 final size:26
Alignment explanation
Indices: 60620725--60620806 Score: 66
Period size: 26 Copynumber: 3.2 Consensus size: 26
60620715 AATTATCCAG
60620725 TACACATAGTAGCCTGCACTTAGTAC
1 TACACATAGTAGCCTGCACTTAGTAC
* * *
60620751 TACACA-CGT-GACCT-AACCATTTG-A-
1 TACACATAGTAG-CCTGCA-C-TTAGTAC
*
60620775 TACACGTAGTAGCCTGCACTTAGTAC
1 TACACATAGTAGCCTGCACTTAGTAC
60620801 TACACA
1 TACACA
60620807 CATGATCGAA
Statistics
Matches: 40, Mismatches: 8, Indels: 16
0.62 0.12 0.25
Matches are distributed among these distances:
24 10 0.25
25 14 0.35
26 16 0.40
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.26
Consensus pattern (26 bp):
TACACATAGTAGCCTGCACTTAGTAC
Found at i:60621167 original size:27 final size:27
Alignment explanation
Indices: 60621137--60621190 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
60621127 TCATACAACC
* *
60621137 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
60621164 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
60621191 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:60630068 original size:43 final size:43
Alignment explanation
Indices: 60629922--60630077 Score: 126
Period size: 43 Copynumber: 3.7 Consensus size: 43
60629912 TGTGATATCG
* * *
60629922 TGTAAGACCACTTCTGGGACGTTGGCATCAAT-TTGTGATTTA-A
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATT-T-AATTACA
* * * * * * *
60629965 GTGTAAGA-CATGTATGGGACATTGGCATTG-TATATGATTTCA
1 -TGTAAGACCACGTCTGGGACGTTGGCATCGATATTTAATTACA
*
60630007 TGTAAGACC-CTGTTTGGGACAG-TGGCATCGATATTTAATTACA
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATTTAATTACA
60630050 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
60630078 TGTACGGGCT
Statistics
Matches: 86, Mismatches: 18, Indels: 17
0.71 0.15 0.14
Matches are distributed among these distances:
41 9 0.10
42 20 0.23
43 49 0.57
44 8 0.09
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.33
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATATTTAATTACA
Found at i:60634940 original size:27 final size:27
Alignment explanation
Indices: 60634909--60634962 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
60634899 TCTCATGGTT
*
60634909 ATATATATTATTCAATCACAACTCTTA
1 ATATACATTATTCAATCACAACTCTTA
*
60634936 ATATACATTATTCAATCACGACTCTTA
1 ATATACATTATTCAATCACAACTCTTA
60634963 CCATACTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.39, C:0.20, G:0.02, T:0.39
Consensus pattern (27 bp):
ATATACATTATTCAATCACAACTCTTA
Found at i:60634968 original size:27 final size:27
Alignment explanation
Indices: 60634915--60634968 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
60634905 GGTTATATAT
*
60634915 ATTATTCAATCACAACTCTTAATATAC
1 ATTATTCAATCACAACTCTTAACATAC
* *
60634942 ATTATTCAATCACGACTCTTACCATAC
1 ATTATTCAATCACAACTCTTAACATAC
60634969 TTTTACCTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.37, C:0.26, G:0.02, T:0.35
Consensus pattern (27 bp):
ATTATTCAATCACAACTCTTAACATAC
Found at i:60638027 original size:46 final size:44
Alignment explanation
Indices: 60637953--60638216 Score: 149
Period size: 46 Copynumber: 5.7 Consensus size: 44
60637943 TGATATGTGC
* *
60637953 GCCAGTGTAAGACATGTCTGGCACATGCATCGGTTACATT-ATGAGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATC-G--ACATTGATGAGA
* *
60637999 GCCAGTGTAAGACATGTTTGGGATATGCATCGACATTGGGATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGACATT--GATGAGA
* * * * *
60638045 GCTAGTGTAAGACATGTCTGGGACATGCATCTG-CCTCGAGATATACAA
1 GCCAGTGTAAGACATGTCTGGGACATGCATC-GACAT--TGAT-GA-GA
* * * * * * * *
60638093 GCTAGTGTAAGACTTGTCTTGGACATG-GT-GTCAGCTTGTTGTGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGACA--TTGATGAGA
* * * *
60638137 GTCAGTGTAAGACCTGTTTGGGACATGGCATCGACATCGATGACGAGA
1 GCCAGTGTAAGACATGTCTGGGACAT-GCATCGACAT---TGATGAGA
* *
60638185 GCTAATGTAAGACATGTCTGGGACATGCATCG
1 GCCAGTGTAAGACATGTCTGGGACATGCATCG
60638217 GCCTCGGGAT
Statistics
Matches: 164, Mismatches: 37, Indels: 33
0.70 0.16 0.14
Matches are distributed among these distances:
43 5 0.03
44 21 0.13
45 4 0.02
46 70 0.43
47 12 0.07
48 52 0.32
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (44 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGACATTGATGAGA
Found at i:60638196 original size:140 final size:139
Alignment explanation
Indices: 60638001--60638312 Score: 482
Period size: 140 Copynumber: 2.2 Consensus size: 139
60637991 TTATGAGTGC
* * * * *
60638001 CAGTGTAAGACATGTTTGGGATAT-GCATCGACATTGGGATGAGAGCTAGTGTAAGACATGTCTG
1 CAGTGTAAGACCTGTTTGGGACATGGCATCGACATCGGGACGAGAGCTAATGTAAGACATGTCTG
* * * *
60638065 GGACATGCATCTGCCTCGAGATATACAAGCTAGTGTAAGACTTGTCTTGGACATGGTGTCAGCTT
66 GGACATGCATCGGCCTCGAGATATACAAGCTAGTGTAAGACCTGTCTGGGACATGGCGTCAGCTT
60638130 GTTGTGTGT
131 GTTGTGTGT
*
60638139 CAGTGTAAGACCTGTTTGGGACATGGCATCGACATCGATGACGAGAGCTAATGTAAGACATGTCT
1 CAGTGTAAGACCTGTTTGGGACATGGCATCGACATCG-GGACGAGAGCTAATGTAAGACATGTCT
* *
60638204 GGGACATGCATCGGCCTCGGGATATACAAGCTTGTGTAAGACCTGTCTGGGACATGGCGTCAGCT
65 GGGACATGCATCGGCCTCGAGATATACAAGCTAGTGTAAGACCTGTCTGGGACATGGCGTCAGCT
60638269 TGTTGTGTGT
130 TGTTGTGTGT
* *
60638279 CAGAGTAAGACCTGTCTGGGACATGGCATCGACA
1 CAGTGTAAGACCTGTTTGGGACATGGCATCGACA
60638313 CTAATAGACA
Statistics
Matches: 158, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
138 22 0.14
139 11 0.07
140 125 0.79
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (139 bp):
CAGTGTAAGACCTGTTTGGGACATGGCATCGACATCGGGACGAGAGCTAATGTAAGACATGTCTG
GGACATGCATCGGCCTCGAGATATACAAGCTAGTGTAAGACCTGTCTGGGACATGGCGTCAGCTT
GTTGTGTGT
Found at i:60639576 original size:21 final size:20
Alignment explanation
Indices: 60639542--60639581 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
60639532 GTCTTATTGG
* *
60639542 CCACATGGGTGTGTTGCCCTT
1 CCACACGGGCGTG-TGCCCTT
60639563 CCACACGGGCGTGTGCCCT
1 CCACACGGGCGTGTGCCCT
60639582 GCTTCAAGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.10, C:0.35, G:0.30, T:0.25
Consensus pattern (20 bp):
CCACACGGGCGTGTGCCCTT
Found at i:60646101 original size:141 final size:141
Alignment explanation
Indices: 60645925--60646239 Score: 443
Period size: 141 Copynumber: 2.2 Consensus size: 141
60645915 ATCGGCATTG
** *
60645925 AGACAAGAGGTAGTGTAAGACATGTCTGGGACATGCATCTGCCTCGGGATATACAAGCTAGTATA
1 AGACAAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGGGATATACAAGCTAGTATA
* * * * *
60645990 AGACCTGTCTTGGACATGGCATCAGCTTGTTGTGTGTCAGTGTAAGACTTGTCTGGGACATGGCA
66 AGACCTATCTGGGACATGGCATCAGCTTGTTGTGTGTCAGAGTAAGACCTGTCTAGGACATGGCA
* *
60646055 TCAATATCGAT
131 TCAACACCGAT
** * *
60646066 AGATGAGAGCCAGTGT-AGAACATGTCTGGGACATGCATCGGCCTCGGGATATACAAGCTTGTGT
1 AGACAAGAGCCAGTGTAAG-ACATGTCTGGGACATGCATCGGCCTCGGGATATACAAGCTAGTAT
* *
60646130 AAGACCTATCTGGGACATGGCGTCAGCTTGTTGTGTGTCAGAGTAAGACCTGTCTAGGACATGTC
65 AAGACCTATCTGGGACATGGCATCAGCTTGTTGTGTGTCAGAGTAAGACCTGTCTAGGACATGGC
*
60646195 ATCGACACCGAT
130 ATCAACACCGAT
* *
60646207 AGACAAGAGCCAGTGTAAGACTTGTTTGGGACA
1 AGACAAGAGCCAGTGTAAGACATGTCTGGGACA
60646240 CGGCATCGAC
Statistics
Matches: 151, Mismatches: 21, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
140 2 0.01
141 147 0.97
142 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.26
Consensus pattern (141 bp):
AGACAAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGGGATATACAAGCTAGTATA
AGACCTATCTGGGACATGGCATCAGCTTGTTGTGTGTCAGAGTAAGACCTGTCTAGGACATGGCA
TCAACACCGAT
Found at i:60647459 original size:20 final size:21
Alignment explanation
Indices: 60647419--60647461 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
60647409 TGTCTTATTG
*
60647419 GCCACACGTGCGTGTTGCCCT
1 GCCACACGGGCGTGTTGCCCT
60647440 GCCACACGGGCGTG-TGCCCT
1 GCCACACGGGCGTGTTGCCCT
60647460 GC
1 GC
60647462 TTCAAGTGGC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 8 0.38
21 13 0.62
ACGTcount: A:0.09, C:0.40, G:0.33, T:0.19
Consensus pattern (21 bp):
GCCACACGGGCGTGTTGCCCT
Found at i:60653059 original size:46 final size:45
Alignment explanation
Indices: 60653003--60653178 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 45
60652993 TGGTTGAGCA
60653003 TCCGAACTCGTTGAGTTGAGTCCGAGTTCAGTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTTATGGATGCGAATG
* *
60653049 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTTATGGATGCGAA-T--G
* *
60653094 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTTATGGATGCGAATG
* * *
60653142 CCCGAGCTCGTTGTGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCG-TTATGG
60653179 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 10, Indels: 20
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 4 0.04
46 61 0.55
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTTATGGATGCGAATG
Found at i:60653160 original size:93 final size:93
Alignment explanation
Indices: 60653000--60653171 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
60652990 GGATGGTTGA
* * *
60653000 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAGTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
60653065 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
60653093 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGTGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
60653158 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
60653172 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:60659421 original size:29 final size:28
Alignment explanation
Indices: 60659364--60659478 Score: 140
Period size: 29 Copynumber: 4.0 Consensus size: 28
60659354 TACCTGTATC
* * *
60659364 TGGCCTATTAAGCCCAATCATATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
*
60659392 TGGCCCATTAGGCCCAAATCACATTGATA
1 TGGCCCATTAGGCCC-AATCACATTCATA
* *
60659421 TGGCCCATTAGGCCAAAATCACATTTATA
1 TGGCCCATTAGGCC-CAATCACATTCATA
* *
60659450 TGGCCCGTTAGGCCCAGTCACATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
60659478 T
1 T
60659479 TAATGCTCAC
Statistics
Matches: 75, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
28 25 0.33
29 50 0.67
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.28
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTCATA
Found at i:60659718 original size:16 final size:16
Alignment explanation
Indices: 60659674--60659718 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
60659664 GTAGCCAAAC
*
60659674 TTTCAGCTTTTCAACA
1 TTTCAGCTTTTCGACA
*
60659690 TTTCGGCTTTTCGACA
1 TTTCAGCTTTTCGACA
*
60659706 TTTCAGCATTTCG
1 TTTCAGCTTTTCG
60659719 GCTTTTGTCG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.18, C:0.24, G:0.13, T:0.44
Consensus pattern (16 bp):
TTTCAGCTTTTCGACA
Found at i:60670071 original size:12 final size:12
Alignment explanation
Indices: 60670054--60670080 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
60670044 GATTCAGAAG
60670054 AGTATGGATAAA
1 AGTATGGATAAA
60670066 AGTATGGATAAA
1 AGTATGGATAAA
60670078 AGT
1 AGT
60670081 TTATGATATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.26, T:0.26
Consensus pattern (12 bp):
AGTATGGATAAA
Found at i:60671457 original size:15 final size:15
Alignment explanation
Indices: 60671434--60671493 Score: 75
Period size: 15 Copynumber: 4.0 Consensus size: 15
60671424 GTATCGTATC
*
60671434 TTGGGTTTCTTTATT
1 TTGGATTTCTTTATT
60671449 TTGGATTTCTTTATT
1 TTGGATTTCTTTATT
* * * *
60671464 CTGGGTTTCTCTATC
1 TTGGATTTCTTTATT
60671479 TTGGATTTCTTTATT
1 TTGGATTTCTTTATT
60671494 CGGTTTTCTT
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
15 36 1.00
ACGTcount: A:0.10, C:0.12, G:0.17, T:0.62
Consensus pattern (15 bp):
TTGGATTTCTTTATT
Found at i:60671471 original size:30 final size:30
Alignment explanation
Indices: 60671435--60671503 Score: 104
Period size: 30 Copynumber: 2.3 Consensus size: 30
60671425 TATCGTATCT
*
60671435 TGGGTTTCTTTATTTTGGATTTCTTTATTC
1 TGGGTTTCTTTATCTTGGATTTCTTTATTC
*
60671465 TGGGTTTCTCTATCTTGGATTTCTTTATTC
1 TGGGTTTCTTTATCTTGGATTTCTTTATTC
*
60671495 -GGTTTTCTT
1 TGGGTTTCTT
60671504 GTTATCTTTA
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
29 7 0.20
30 28 0.80
ACGTcount: A:0.09, C:0.13, G:0.17, T:0.61
Consensus pattern (30 bp):
TGGGTTTCTTTATCTTGGATTTCTTTATTC
Found at i:60673940 original size:93 final size:93
Alignment explanation
Indices: 60673781--60673952 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
60673771 CGGATATTTG
* * ** *
60673781 GGCATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATAGATACGAACGTTCGAACTTGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATACAAACGCCCGAACTCGTTGAG
60673846 TTGAGTCCGAGTTCGTGAAATGTAACTA
66 TTGAGTCCGAGTTCGTGAAATGTAACTA
* * * *
60673874 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATACAAACGCCCGAACTCGTTGAG
60673939 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
60673953 ACTTATGGAT
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATACAAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAAATGTAACTA
Found at i:60674044 original size:139 final size:139
Alignment explanation
Indices: 60673794--60674099 Score: 522
Period size: 139 Copynumber: 2.2 Consensus size: 139
60673784 ATCCGAACTT
* * * *
60673794 GTTGAGTTGAGTCCGAGTTCACTTATAGATACGAACGTTCGAACTTGTTGAGTTGAGTCCGAGTT
1 GTTGAGTTGAGTCCGAGTTCACTTATGGATACAAACGTCCGAACTCGTTGAGTTGAGTCCGAGTT
*
60673859 CGTGAAATGTAACTAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
66 CGTGAAATGTAACTAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
60673924 CCCGAGCTC
131 CCCGAGCTC
*
60673933 GTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAGTTGAGTCCGAGTT
1 GTTGAGTTGAGTCCGAGTTCACTTATGGATACAAACGTCCGAACTCGTTGAGTTGAGTCCGAGTT
*
60673998 CGTGAAATGTAACTAGGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAACG
66 CGTGAAATGTAACTAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*
60674063 CCTGAGCTC
131 CCCGAGCTC
* *
60674072 ATTGAGTTGAGTCCGAGTTCGCTTATGG
1 GTTGAGTTGAGTCCGAGTTCACTTATGG
60674100 GTGGGTTACA
Statistics
Matches: 157, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
139 157 1.00
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (139 bp):
GTTGAGTTGAGTCCGAGTTCACTTATGGATACAAACGTCCGAACTCGTTGAGTTGAGTCCGAGTT
CGTGAAATGTAACTAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
CCCGAGCTC
Found at i:60674098 original size:46 final size:46
Alignment explanation
Indices: 60673786--60674099 Score: 289
Period size: 46 Copynumber: 6.8 Consensus size: 46
60673776 ATTTGGGCAT
* * * * *
60673786 CCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATAGATACGAACGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
* * * * * * *
60673832 TCGAACTTGTTGAGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ACGC
*
60673877 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
* *
60673925 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
* * * * *
60673971 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ACGC
*
60674016 ATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
* * * *
60674064 CTGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
60674100 GTGGGTTACA
Statistics
Matches: 217, Mismatches: 37, Indels: 28
0.77 0.13 0.10
Matches are distributed among these distances:
43 8 0.04
45 8 0.04
46 128 0.59
47 53 0.24
48 10 0.05
50 10 0.05
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
Found at i:60675455 original size:29 final size:29
Alignment explanation
Indices: 60675423--60675498 Score: 125
Period size: 29 Copynumber: 2.6 Consensus size: 29
60675413 ATCATATTCT
*
60675423 TATGGCCCATTAGGCCCAAATCACCTGTA
1 TATGGCCCATTAGGCCCAAATCACATGTA
*
60675452 TATGGCCCATTAGGCCCAAATCACATTTA
1 TATGGCCCATTAGGCCCAAATCACATGTA
*
60675481 TATGGCCCGTTAGGCCCA
1 TATGGCCCATTAGGCCCA
60675499 GTCACATTCA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.25
Consensus pattern (29 bp):
TATGGCCCATTAGGCCCAAATCACATGTA
Found at i:60681672 original size:48 final size:48
Alignment explanation
Indices: 60681405--60681684 Score: 312
Period size: 48 Copynumber: 5.8 Consensus size: 48
60681395 TTAAGTACCA
* * ** *
60681405 ATGCCATGTCCCCGACATGGTCTTACATGAATC-CACATATCATCACCG
1 ATGCCATGTCCCAGACATGGTCTTACA-CAGGCACACATATCATCGCCG
* * * **
60681453 ATGCCACGTACCAGACATGGTCTTACACTGGCACACATATCATCGTTG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACACATATCATCGCCG
* * **
60681501 ATGCCAGGTCCCAGGCATGGTCTTACATTGGCACACATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACACATATCATCGCCG
* * * * *
60681549 ATTCCATGTCCGAGACATGGTCTTACAAAGGCACATATATCGTCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACACATATCATCGCCG
* *
60681597 ATGCCATGTCCCAGACGTGGTCTTACACAGGCACA-AGTATCATCACCG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACACA-TATCATCGCCG
* * *
60681645 GTGCCATGTCCTAGACATGGTCTTACACAGGCACATATAT
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACACATAT
60681685 TACGGTGTCA
Statistics
Matches: 196, Mismatches: 33, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
47 2 0.01
48 193 0.98
49 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACAGGCACACATATCATCGCCG
Found at i:60689112 original size:48 final size:48
Alignment explanation
Indices: 60689041--60689353 Score: 276
Period size: 48 Copynumber: 6.6 Consensus size: 48
60689031 TTAAGTACCA
* *
60689041 ATGCCATGTCCCCA-ACATGGTCTTACA-T-GAATGCACATATAATCGCCG
1 ATGCCATGT-CCCAGACATGGTCTTACACTGGCA--CACATATAATCACCG
** * * * *
60689089 ATGCCATGGACCAGACATGGTCTTACACTGGCAGATATATCATCACTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATAATCACCG
* * *
60689137 ATGCCATGTCCCAAACATGGTCTTATACTGGCACACATATCATCACCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATAATCACCG
* * * **
60689185 ATGCCATGTCCCAGACACGGTCTTACATTGGCACACATATCATCGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATAATCACCG
* ** ** ** *
60689233 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATGTATCGTTGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATAATCACCG
* * ** * * **
60689281 ATTCCATGTCCCAGAGATGG--TTACACAAGTACATATATAATCGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATAATCACCG
60689327 ATGCCATGTCCCAGACATGGTCTTACA
1 ATGCCATGTCCCAGACATGGTCTTACA
60689354 AAGACACATA
Statistics
Matches: 218, Mismatches: 42, Indels: 10
0.81 0.16 0.04
Matches are distributed among these distances:
46 36 0.17
47 3 0.01
48 176 0.81
49 1 0.00
50 2 0.01
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATAATCACCG
Found at i:60689288 original size:96 final size:96
Alignment explanation
Indices: 60689041--60689366 Score: 322
Period size: 96 Copynumber: 3.4 Consensus size: 96
60689031 TTAAGTACCA
* * * * **
60689041 ATGCCATGTCCCCA-ACATGGTCTTACATGAATGCACATATA--ATCGCCGATGCCATGGACCAG
1 ATGCCATGT-CCCAGACATGGTCTTACA--CAGGCACATATATCATCACCAATGCCATGTCCCAG
* *
60689103 ACATGGTCTTACACTGGCAGATATATCATC-ACTG
63 ACATGGTCTTACACTGGCACATATATCATCGTC-G
* * * * *
60689137 ATGCCATGTCCCAAACATGGTCTTATACTGGCACACATATCATCACCGATGCCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCACCAATGCCATGTCCCAGACA
* * *
60689202 CGGTCTTACATTGGCACACATATCATCGTCG
66 TGGTCTTACACTGGCACATATATCATCGTCG
* * ** * *
60689233 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATGTATCGTTGCCAATTCCATGTCCCAGAGA
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCACCAATGCCATGTCCCAGACA
** * *
60689298 TGG--TTACACAAGTACATATATAATCGTCG
66 TGGTCTTACACTGGCACATATATCATCGTCG
* *
60689327 ATGCCATGTCCCAGACATGGTCTTACAAAGACACATATAT
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATAT
60689367 TACGGTGTCA
Statistics
Matches: 192, Mismatches: 34, Indels: 10
0.81 0.14 0.04
Matches are distributed among these distances:
94 65 0.34
95 4 0.02
96 122 0.64
97 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (96 bp):
ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCACCAATGCCATGTCCCAGACA
TGGTCTTACACTGGCACATATATCATCGTCG
Found at i:60689301 original size:144 final size:141
Alignment explanation
Indices: 60689041--60689365 Score: 334
Period size: 144 Copynumber: 2.3 Consensus size: 141
60689031 TTAAGTACCA
60689041 ATGCCATGTCCCCA-ACATGGTCTTACATGAATGCACATATAATCGCCGATGCCATGGACCAGAC
1 ATGCCATGT-CCCAGACATGGTCTTACATGAA-GCACATATAATCGCCGATGCCATGGACCAGAC
* * ** * **
60689105 ATGGTCTTACACTGGCAGATATATCATCACTGATGCCATGTCCCAAACATGGTCTTATACTGGCA
64 ATGGTCTTACACAGGCACATATATCATCACCAATGCCATGTCCCAAACATGG--TTACACAAGCA
*
60689170 CACATATCATCACCG
127 CACATATAATCACCG
* * * * **
60689185 ATGCCATGTCCCAGACACGGTCTTACATTGGCA-CACATATCATCGTCGATGCCATGTCCCAGAC
1 ATGCCATGTCCCAGACATGGTCTTACA-T-GAAGCACATATAATCGCCGATGCCATGGACCAGAC
* * ** * * * *
60689249 ATGGTCTTACACAGGCACATGTATCGTTGCCAATTCCATGTCCCAGAGATGGTTACACAAGTACA
64 ATGGTCTTACACAGGCACATATATCATCACCAATGCCATGTCCCAAACATGGTTACACAAGCACA
* **
60689314 TATATAATCGTCG
129 CATATAATCACCG
60689327 ATGCCATGTCCCAGACATGGTCTTACA--AAGACACATATA
1 ATGCCATGTCCCAGACATGGTCTTACATGAAG-CACATATA
60689366 TTACGGTGTC
Statistics
Matches: 148, Mismatches: 28, Indels: 14
0.78 0.15 0.07
Matches are distributed among these distances:
138 1 0.01
140 7 0.05
142 44 0.30
143 4 0.03
144 89 0.60
145 1 0.01
146 2 0.01
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (141 bp):
ATGCCATGTCCCAGACATGGTCTTACATGAAGCACATATAATCGCCGATGCCATGGACCAGACAT
GGTCTTACACAGGCACATATATCATCACCAATGCCATGTCCCAAACATGGTTACACAAGCACACA
TATAATCACCG
Found at i:60709314 original size:19 final size:19
Alignment explanation
Indices: 60709278--60709315 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
60709268 CTCATACACC
*
60709278 AAAGTGAAAATTTGATTTT
1 AAAGTGAAAAGTTGATTTT
60709297 AAAGTGAAAAAGTT-ATTTT
1 AAAGTG-AAAAGTTGATTTT
60709316 TTTGGCCATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.45, C:0.00, G:0.16, T:0.39
Consensus pattern (19 bp):
AAAGTGAAAAGTTGATTTT
Done.