Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 179 of 295
Found at i:61481444 original size:73 final size:73
Alignment explanation
Indices: 61481279--61481447 Score: 252
Period size: 73 Copynumber: 2.3 Consensus size: 73
61481269 GAGGAAGTGC
* *
61481279 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCC
1 AAAAGGGCTTAGGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
61481344 AACTATTA
66 AACTATTA
* *
61481352 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTTTGCCCC
1 AAAAGGGCTTAGGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
**
61481417 AGTTATT-
66 AACTATTA
61481424 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTAGGCC-CCAGTTAT
61481448 ATGATAAAGC
Statistics
Matches: 89, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
72 10 0.11
73 79 0.89
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (73 bp):
AAAAGGGCTTAGGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
AACTATTA
Found at i:61489471 original size:20 final size:20
Alignment explanation
Indices: 61489442--61489480 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
61489432 TAAATATGGT
61489442 ATGTAGGATATGAACATGAC
1 ATGTAGGATATGAACATGAC
* *
61489462 ATGTATGATATGCACATGA
1 ATGTAGGATATGAACATGA
61489481 TATGATATGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.10, G:0.23, T:0.28
Consensus pattern (20 bp):
ATGTAGGATATGAACATGAC
Found at i:61489486 original size:16 final size:16
Alignment explanation
Indices: 61489460--61489497 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
61489450 TATGAACATG
61489460 ACATG-TATGATATGC
1 ACATGATATGATATGC
61489475 ACATGATATGATATGC
1 ACATGATATGATATGC
61489491 ACATGAT
1 ACATGAT
61489498 GTATTCATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
15 5 0.23
16 17 0.77
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (16 bp):
ACATGATATGATATGC
Found at i:61489573 original size:24 final size:24
Alignment explanation
Indices: 61489547--61489836 Score: 422
Period size: 24 Copynumber: 12.0 Consensus size: 24
61489537 GAGGAAGTGC
*
61489547 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
61489571 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
61489595 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
61489619 AAAAAGGGCTTATGCCCCAGTTATC
1 -AAAAGGGCTTATGCCCCAGTTATT
* *
61489644 AAAAAGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
*
61489668 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
61489692 AAAAGAGGC-TAGGCCTCCAGTTATT
1 AAAAG-GGCTTATGCC-CCAGTTATT
*
61489717 AAATGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
61489741 AAAAGGGCTTATGTCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
61489765 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
61489789 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
61489813 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
61489837 ATGATAAAGC
Statistics
Matches: 242, Mismatches: 18, Indels: 11
0.89 0.07 0.04
Matches are distributed among these distances:
24 187 0.77
25 55 0.23
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:61489666 original size:73 final size:72
Alignment explanation
Indices: 61489547--61489836 Score: 422
Period size: 73 Copynumber: 4.0 Consensus size: 72
61489537 GAGGAAGTGC
61489547 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCC
61489612 AGTTATT
66 AGTTATT
* * *
61489619 AAAAAGGGCTTATGCCCCAGTTATCAAAAAGGCTTATGCCCCAGTTATCAAAAGGGCTTTTGCCC
1 -AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCC
61489684 CAGTTATT
65 CAGTTATT
* * * *
61489692 AAAAGAGGC-TAGGCCTCCAGTTATTAAATGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGTC
1 AAAAG-GGCTTATGCC-CCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCC
*
61489756 CCAGTTATC
64 CCAGTTATT
* * *
61489765 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAAG-GGCTTATGCC-
61489829 CCAGTTAT
64 CCAGTTAT
61489837 ATGATAAAGC
Statistics
Matches: 196, Mismatches: 16, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
72 53 0.27
73 143 0.73
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCC
AGTTATT
Found at i:61489725 original size:97 final size:96
Alignment explanation
Indices: 61489546--61489836 Score: 451
Period size: 97 Copynumber: 3.0 Consensus size: 96
61489536 GGAGGAAGTG
61489546 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCC
1 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCC
61489611 CAGTTATTAAAAAGGGCTTATGCCCCAGTTAT
66 CAGTTATT-AAAAGGGCTTATGCCCCAGTTAT
* * *
61489643 CAAAAAGGCTTATGCCCCAGTTATCAAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCC
1 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAAG-GGCTTATGCC
*
61489707 TCCAGTTATTAAATGGGCTTATGCCCCAGTTAT
65 -CCAGTTATTAAAAGGGCTTATGCCCCAGTTAT
* * *
61489740 TAAAAGGGCTTATGTCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTTGCCC
1 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCC
*
61489805 CAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
66 CAGTTATTAAAAG-GGCTTATGCC-CCAGTTAT
61489837 ATGATAAAGC
Statistics
Matches: 177, Mismatches: 12, Indels: 10
0.89 0.06 0.05
Matches are distributed among these distances:
96 21 0.12
97 144 0.81
98 12 0.07
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (96 bp):
CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCC
CAGTTATTAAAAGGGCTTATGCCCCAGTTAT
Found at i:61491777 original size:46 final size:47
Alignment explanation
Indices: 61491708--61491831 Score: 152
Period size: 46 Copynumber: 2.7 Consensus size: 47
61491698 TATATGTGCC
61491708 AGTGTAAGACATGTCTAGGACATGCATCGGCCACATT-ATGA-A-AGCA
1 AGTGTAAGACATGTCTAGGACATGCATCGGCC-CATTGA-GACAGAGCA
* *
61491754 AGTGTAAGACATGTCT-GGAACATGCATCAG--CATTGAGACGAGAGCT
1 AGTGTAAGACATGTCTAGG-ACATGCATCGGCCCATTGAGAC-AGAGCA
61491800 AGTGTAAGACATGTCTAGGACATGCATCGGCC
1 AGTGTAAGACATGTCTAGGACATGCATCGGCC
61491832 TCGGGATATA
Statistics
Matches: 67, Mismatches: 3, Indels: 14
0.80 0.04 0.17
Matches are distributed among these distances:
43 6 0.09
44 1 0.01
45 3 0.04
46 55 0.82
47 2 0.03
ACGTcount: A:0.32, C:0.19, G:0.27, T:0.22
Consensus pattern (47 bp):
AGTGTAAGACATGTCTAGGACATGCATCGGCCCATTGAGACAGAGCA
Found at i:61491947 original size:49 final size:49
Alignment explanation
Indices: 61491891--61492021 Score: 172
Period size: 49 Copynumber: 2.7 Consensus size: 49
61491881 TGTTGTGTGT
* * *
61491891 CAGTGTAAGACCTGTCTGGGACATGGCATTGACATCAATAGACGAGAGA
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACATCAATAAACGAAAGA
* * * * * *
61491940 CAGTGTAAGATCTGTCTGGGACATGGCATCGGCCTCGATAAATGAAAGT
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACATCAATAAACGAAAGA
*
61491989 CAGTGTAAGACCTGTCTGGGACATGACATCGAC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGAC
61492022 TTTGATGTGC
Statistics
Matches: 70, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
49 70 1.00
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCGACATCAATAAACGAAAGA
Found at i:61497219 original size:419 final size:419
Alignment explanation
Indices: 61496427--61497250 Score: 1080
Period size: 419 Copynumber: 2.0 Consensus size: 419
61496417 AGAGAGTGAT
* * * *
61496427 ATTTTGCTGCTTTAGTGGATAAGGTGAAGATCACTGAAGAAGTAAAGCGTATAGAATGACAGAAT
1 ATTTTGCTGCTTTAGTGGATAAGGTGAAGATCACTGAAAAAGTAAAGCATACAGAACGACAGAAT
* * *
61496492 CATGAGAAAGAAAGAGGTAGAAACAAGAGGGATTCAGAGGCCTCAAGTTCATTTATGAGGCCTAA
66 CATGAGAAAGAAAGAGGTAGAAACAAAAGGGACTCAGAGACCTCAAGTTCATTTATGAGGCCTAA
* * * * *
61496557 GAAAAAGGCCAAAGTTGATGGGTCAGTCAGAGTTGAGGTCCCTGTTGCTACTACAGGACCGCAGA
131 GAAAAAGGCCAAAGTTGATGGGCCAATCAGAGTTGAGGCCCCTGTTACTACTACAGGACCACAGA
* * *
61496622 CCTGTATGGATTGTGGGAGATGCCATCACGGCAAGTGCTGGAAACAGACTGGGGCATGTTTGAGA
196 CCTGTACGGATTGTGGGAGACGCCATCACGGCAAGTGCTAGAAACAGACTGGGGCATGTTTGAGA
* * * * * *
61496687 TGTGGATCATTAGAGCATCGAACCAGAGATTGTCCACAGACGCCCGAGTAGATGGAAGCTACAGG
261 TATGGATCATTAGAGCACCAAACCAGAGATAGTCCACAGACGCCCGACTAGATGCAAGCTACAGG
* * ** * * *
61496752 TTTGGATAATGTACAACCGTCGAGGGGTGGTCATTAGCCACTGAGAGGCCGTGCTCAGGTCAGAG
326 TTTGGATAATGTACAACCGCCGAAGGGTGGTCAACAGCCACCGAGAGGCCGTGCTCAGGCCAAAG
61496817 GCAGAAATGGTATGGTTAGGCCTGAGTAG
391 GCAGAAATGGTATGGTTAGGCCTGAGTAG
**
61496846 ATTTTGCTGCTTTAGTGGATAAGGTGAAGATTGCTGAAAAAGTGAAA-CATACAGAACGACAGAA
1 ATTTTGCTGCTTTAGTGGATAAGGTGAAGATCACTGAAAAAGT-AAAGCATACAGAACGACAGAA
*
61496910 TCATGAGAAAGAAAGAGGTAGGAACAAAAGGGACTCAGA-ACCTTCAAGTTCATTTATGAGGCCT
65 TCATGAGAAAGAAAGAGGTAGAAACAAAAGGGACTCAGAGACC-TCAAGTTCATTTATGAGGCCT
* * * **
61496974 AAGAAAAAGGCTAGAGTTGATGGGCCAATCAGAGTT-AGGGCCCCTGTTACTGCTATTGGACCAC
129 AAGAAAAAGGCCAAAGTTGATGGGCCAATCAGAGTTGA-GGCCCCTGTTACTACTACAGGACCAC
* * ** ** *
61497038 A-ACCCTGTGCGGATTGTGGGAGACGCCATCATGGTGAGTGCTAGAAATGGATTGGGGCATGTTT
193 AGA-CCTGTACGGATTGTGGGAGACGCCATCACGGCAAGTGCTAGAAACAGACTGGGGCATGTTT
* * ** * * *
61497102 GAGGTATGGATCATTAGAGTACCAAATTAGAGATAGTCTACGGAGGCCCGACTAGATGCAAGCTA
257 GAGATATGGATCATTAGAGCACCAAACCAGAGATAGTCCACAGACGCCCGACTAGATGCAAGCTA
* * * *
61497167 TAGGTTTGGGTAATGTTCAACCGCCGAAGGGTGGTCAACAGCCACCGAGAGGCCGTGGTCAGGCC
322 CAGGTTTGGATAATGTACAACCGCCGAAGGGTGGTCAACAGCCACCGAGAGGCCGTGCTCAGGCC
**
61497232 AAAGGTGGAAATGGTATGG
387 AAAGGCAGAAATGGTATGG
61497251 GTCGTGGTCG
Statistics
Matches: 345, Mismatches: 56, Indels: 8
0.84 0.14 0.02
Matches are distributed among these distances:
418 4 0.01
419 338 0.98
420 3 0.01
ACGTcount: A:0.31, C:0.17, G:0.31, T:0.22
Consensus pattern (419 bp):
ATTTTGCTGCTTTAGTGGATAAGGTGAAGATCACTGAAAAAGTAAAGCATACAGAACGACAGAAT
CATGAGAAAGAAAGAGGTAGAAACAAAAGGGACTCAGAGACCTCAAGTTCATTTATGAGGCCTAA
GAAAAAGGCCAAAGTTGATGGGCCAATCAGAGTTGAGGCCCCTGTTACTACTACAGGACCACAGA
CCTGTACGGATTGTGGGAGACGCCATCACGGCAAGTGCTAGAAACAGACTGGGGCATGTTTGAGA
TATGGATCATTAGAGCACCAAACCAGAGATAGTCCACAGACGCCCGACTAGATGCAAGCTACAGG
TTTGGATAATGTACAACCGCCGAAGGGTGGTCAACAGCCACCGAGAGGCCGTGCTCAGGCCAAAG
GCAGAAATGGTATGGTTAGGCCTGAGTAG
Found at i:61502713 original size:40 final size:39
Alignment explanation
Indices: 61502644--61502733 Score: 96
Period size: 40 Copynumber: 2.3 Consensus size: 39
61502634 AAAATCCAAA
61502644 ATAATATAATAATATAAAAATATAAATATTGTGGTAAAAT
1 ATAATATAATAATATAAAAATATAAATATT-TGGTAAAAT
* * *
61502684 ATAATATAATAA-ATAATAAGTA-ATGATATTTGTTAAAAT
1 ATAATATAATAATATAA-AAATATA-AATATTTGGTAAAAT
61502723 AT-ATATTAATA
1 ATAATA-TAATA
61502734 TGATAGTAGA
Statistics
Matches: 44, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
38 3 0.07
39 20 0.45
40 21 0.48
ACGTcount: A:0.56, C:0.00, G:0.07, T:0.38
Consensus pattern (39 bp):
ATAATATAATAATATAAAAATATAAATATTTGGTAAAAT
Found at i:61502832 original size:25 final size:27
Alignment explanation
Indices: 61502796--61502853 Score: 77
Period size: 26 Copynumber: 2.2 Consensus size: 27
61502786 TATATTTATA
*
61502796 TTAAAATAAAATA-A-TATATATAATGT
1 TTAAAATAAAATAGATTATAGATAA-GT
61502822 TTAAAAT-AAATAGATTATAGATAAGT
1 TTAAAATAAAATAGATTATAGATAAGT
61502848 TTAAAA
1 TTAAAA
61502854 GGGATAAAAG
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
25 5 0.17
26 16 0.55
27 8 0.28
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.36
Consensus pattern (27 bp):
TTAAAATAAAATAGATTATAGATAAGT
Found at i:61504388 original size:92 final size:92
Alignment explanation
Indices: 61504231--61504399 Score: 295
Period size: 92 Copynumber: 1.8 Consensus size: 92
61504221 GGATGGTTGA
* *
61504231 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAATGTCCGAACTCGTTGAGTT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAACGCCCGAACTCGTTGAGTT
61504296 GAGTCCGAGTTCGTGAGATGTAACTAG
66 GAGTCCGAGTTCGTGAGATGTAACTAG
*
61504323 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAC-TATGGATGCGAACGCCCGAACTCGTTGAGT
61504387 TGAGTCCGAGTTC
65 TGAGTCCGAGTTC
61504400 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 65 0.89
93 8 0.11
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAACGCCCGAACTCGTTGAGTT
GAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:61504403 original size:45 final size:45
Alignment explanation
Indices: 61504235--61504404 Score: 204
Period size: 45 Copynumber: 3.7 Consensus size: 45
61504225 GGTTGAGCAT
* *
61504235 CCGAACTCGTTGAGTTGAGTCCGAGTTCAC-TATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAACGC
* * *
61504280 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAAC---GC
61504325 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAACGC
*
61504372 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
61504405 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 62 0.58
47 30 0.28
48 2 0.02
50 7 0.07
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (45 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAACGC
Found at i:61509857 original size:56 final size:56
Alignment explanation
Indices: 61509771--61509890 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
61509761 ACAAGGGATG
61509771 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
61509827 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
61509883 ATGGGCAA
1 ATGGGCAA
61509891 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:61511151 original size:79 final size:81
Alignment explanation
Indices: 61511015--61511197 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
61511005 TCGAATGATG
* *
61511015 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
61511079 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
61511094 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
61511156 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
61511174 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
61511198 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:61511213 original size:40 final size:40
Alignment explanation
Indices: 61511016--61511199 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
61511006 CGAATGATGT
* * * *
61511016 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
61511056 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
61511096 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
61511134 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
61511175 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
61511200 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 34 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:61511221 original size:79 final size:79
Alignment explanation
Indices: 61511068--61511232 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
61511058 GGACTAAGAT
* **
61511068 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
61511133 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
61511147 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
61511210 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
61511226 CCGAAGG
1 CCGAAGG
61511233 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:61517745 original size:54 final size:56
Alignment explanation
Indices: 61517663--61517780 Score: 222
Period size: 54 Copynumber: 2.1 Consensus size: 56
61517653 ACAAGGGATG
61517663 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAA-AA-AAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
61517717 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
61517773 ATGGGCAA
1 ATGGGCAA
61517781 TAAACTAATA
Statistics
Matches: 62, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
54 40 0.65
55 2 0.03
56 20 0.32
ACGTcount: A:0.45, C:0.09, G:0.24, T:0.22
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
Found at i:61519100 original size:79 final size:79
Alignment explanation
Indices: 61518908--61519131 Score: 292
Period size: 79 Copynumber: 2.8 Consensus size: 79
61518898 TCGAATGATG
* * * * *
61518908 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGCTAAG-TCCGAAGGCATT
*
61518972 TGTGCGAGATACTAAT
64 TGTGCGAGATACTAAA
* *
61518988 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCGAAGGCATTTG
*
61519052 TGCGAGTTACTAAA
66 TGCGAGATACTAAA
* *
61519066 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGT-CCGAAGGCATT
61519130 TG
64 TG
61519132 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
78 36 0.28
79 59 0.46
80 32 0.25
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCGAAGGCATTTG
TGCGAGATACTAAA
Found at i:61519145 original size:40 final size:40
Alignment explanation
Indices: 61518908--61519131 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
61518898 TCGAATGATG
* * * *
61518908 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
61518948 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
61518988 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
61519027 TCCGGGTTAAGT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
61519066 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
61519107 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
61519132 AACGAGTAGC
Statistics
Matches: 163, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
39 72 0.44
40 81 0.50
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:61519162 original size:79 final size:79
Alignment explanation
Indices: 61518947--61519164 Score: 237
Period size: 79 Copynumber: 2.8 Consensus size: 79
61518937 AAGTGACCAT
* ** * * * *
61518947 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCT-AAGCCCGAAGGCATT
1 ATCCGGGCTAAG-TCCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATT
61519011 GGTGCGAGTTACTAA
65 GGTGCGAGTTACTAA
* ** * *
61519026 ATCCGGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 ATCCGGGCTAAGTCCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTG
61519091 GTGCGAGTTACTATA
66 GTGCGAGTTACTA-A
* * *
61519106 A-CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 ATCCGGGCTAAGT-CCGAAGGCATTTGAACGAGTTA-CTAAATCCGGGTTAAATCCCGAAGG
61519165 TACGTGATTT
Statistics
Matches: 120, Mismatches: 15, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
78 33 0.28
79 61 0.51
80 26 0.22
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
ATCCGGGCTAAGTCCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTG
GTGCGAGTTACTAA
Found at i:61522985 original size:92 final size:92
Alignment explanation
Indices: 61522828--61522996 Score: 277
Period size: 92 Copynumber: 1.8 Consensus size: 92
61522818 GGATGGTTGA
* * *
61522828 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAATGTCCGAACTCGTTGAGTT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAACGCCCGAACTCATTGAGTT
61522893 GAGTCCGAGTTCGTGAGATGTAACTAG
66 GAGTCCGAGTTCGTGAGATGTAACTAG
*
61522920 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAC-TATGGATGCGAACGCCCGAACTCATTGAGT
*
61522984 TGAGTCTGAGTTC
65 TGAGTCCGAGTTC
61522997 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 63 0.89
93 8 0.11
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAACGCCCGAACTCATTGAGTT
GAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:61523000 original size:45 final size:45
Alignment explanation
Indices: 61522832--61523001 Score: 186
Period size: 45 Copynumber: 3.7 Consensus size: 45
61522822 GGTTGAGCAT
* *
61522832 CCGAACTCGTTGAGTTGAGTCCGAGTTCAC-TATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAACGC
* * *
61522877 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAAC---GC
61522922 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAACGC
* * *
61522969 CCGAGCTCATTGAGTTGAGTCTGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
61523002 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 11, Indels: 18
0.78 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 60 0.57
47 30 0.29
48 2 0.02
50 7 0.07
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (45 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAACGC
Found at i:61526283 original size:206 final size:204
Alignment explanation
Indices: 61525922--61526477 Score: 781
Period size: 206 Copynumber: 2.7 Consensus size: 204
61525912 AAATCTGCTT
* *
61525922 CTTCGATTTGTTCTCTGACAATACAGAGTTGCCAAATCATCTTAGATTTGCTTCAGCGTTAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
** * * *
61525987 GCAAAAACCAAATCAGCTATGTCTTCGATTTTCTCCTTGTAAGCACAAGGATACCAAACTATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTT-TCCTTGTAAACACAAGGATGCCAAAC-ATCTT
* * * ** * * * *
61526052 GGATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTACTATGTGTTTGCCCTCTGTCCAATATG
129 GGATATGCTTCAGTATAAACATCTGAAGGCCAGATCTACTATGTATATGCCCTCCGTCAAATATG
61526117 GAGACGCCAAA
194 GAGACGCCAAA
* * *
61526128 CTTTGATTTGTTCTTTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* * * *
61526193 ATGAAAGCTAAGTCAACTATGAT-TTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCT
66 GTGAAAGCCAAATCAGCTATG-TCTTCGATTT-TTCCTTGTAAACACAAGGATGCCAAA-CATCT
* *
61526257 TGGATATGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATATGCTCTCCGTCAAATAT
128 TGGATATGCTTCAGTATAAACATCTGAAGGCCAGATCTACTATGTATATGCCCTCCGTCAAATAT
61526322 GGAGACGCCAAA
193 GGAGACGCCAAA
* *
61526334 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTTATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
61526399 GTGAAAGCCAAATCAGCTATGTCTTCGATTTATTCCTTGTAAACACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTT-TTCCTTGTAAACACAAGGATGCCAAA-CATCTT
*
61526464 GGATCTTGCTTCAG
129 GGAT-ATGCTTCAG
61526478 CCAGATCTGC
Statistics
Matches: 308, Mismatches: 37, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
205 1 0.00
206 296 0.96
207 11 0.04
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (204 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTTTCCTTGTAAACACAAGGATGCCAAACATCTTGG
ATATGCTTCAGTATAAACATCTGAAGGCCAGATCTACTATGTATATGCCCTCCGTCAAATATGGA
GACGCCAAA
Found at i:61535173 original size:46 final size:46
Alignment explanation
Indices: 61535123--61535298 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
61535113 TGGTTGAGCA
61535123 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
61535169 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
61535214 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
61535262 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
61535299 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:61535279 original size:93 final size:93
Alignment explanation
Indices: 61535120--61535291 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
61535110 GGATGGTTGA
* *
61535120 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
61535185 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
61535213 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
61535278 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
61535292 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:61542665 original size:46 final size:46
Alignment explanation
Indices: 61542615--61542786 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
61542605 TGAGCATCCA
61542615 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
* * * *
61542661 AACTCGTTGAGTTGAGTCTGAGTT--CGT-GGGATG-TAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCCG
* * * *
61542708 AGCTCGTTGAGTTGAGTCCGGGTTCACTTATGGATGCGAACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
*
61542754 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
61542787 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 6 0.06
44 2 0.02
45 1 0.01
46 58 0.56
47 25 0.24
48 1 0.01
49 2 0.02
50 5 0.05
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.30
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
Found at i:61542767 original size:93 final size:93
Alignment explanation
Indices: 61542608--61542778 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
61542598 GGATGGTTGA
* *
61542608 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
61542673 TGAGTCTGAGTTCGTGGGATGTAACTAG
66 TGAGTCCGAGTTCGTGGGATGTAACTAG
* * * *
61542701 GCATCCGAGCTCGTTGAGTTGAGTCCGGGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
61542766 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
61542779 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGGGATGTAACTAG
Found at i:61545534 original size:68 final size:67
Alignment explanation
Indices: 61545462--61545611 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
61545452 CATCATGTGT
* * * *
61545462 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
61545524 ATGTAG
62 ATGTAG
** * *
61545530 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
61545595 AG
66 AG
61545597 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
61545612 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:61545567 original size:64 final size:64
Alignment explanation
Indices: 61545486--61545669 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
61545476 AGACATTATG
* *
61545486 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
61545550 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
61545615 AA
63 AA
* * * *
61545617 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
61545670 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:61549281 original size:93 final size:93
Alignment explanation
Indices: 61549170--61549340 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
61549160 GCCCCTAAGT
* * *
61549170 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
61549235 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
61549263 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
61549328 CGAGTTCGGATGC
66 CGAGTTCGGATGC
61549341 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:61549337 original size:46 final size:46
Alignment explanation
Indices: 61549165--61549337 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
61549155 AACCCGCCCC
* * * *
61549165 TAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
61549211 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
61549259 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
61549304 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
61549338 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 60 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:61552854 original size:24 final size:25
Alignment explanation
Indices: 61552797--61552854 Score: 75
Period size: 24 Copynumber: 2.4 Consensus size: 25
61552787 TTGTTATGCC
*
61552797 AATTATATAAATAAAAAACAACAAT
1 AATTATATATATAAAAAACAACAAT
*
61552822 -TTTATATATATAAAAAACAA-AAT
1 AATTATATATATAAAAAACAACAAT
*
61552845 AATTAAATAT
1 AATTATATAT
61552855 TATATGGTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
23 3 0.11
24 25 0.89
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.31
Consensus pattern (25 bp):
AATTATATATATAAAAAACAACAAT
Found at i:61568884 original size:15 final size:15
Alignment explanation
Indices: 61568864--61568911 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
61568854 TCAAAGATGG
61568864 GTTTATGGATATGAA
1 GTTTATGGATATGAA
* * *
61568879 GTTTATGTAGATG-G
1 GTTTATGGATATGAA
*
61568893 GTTTATGGATATAAA
1 GTTTATGGATATGAA
61568908 GTTT
1 GTTT
61568912 TTGTAGGTTT
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
14 10 0.40
15 15 0.60
ACGTcount: A:0.29, C:0.00, G:0.27, T:0.44
Consensus pattern (15 bp):
GTTTATGGATATGAA
Found at i:61568898 original size:14 final size:14
Alignment explanation
Indices: 61568858--61568901 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
61568848 AAGGATTCAA
61568858 AGATGGGTTTATGG
1 AGATGGGTTTATGG
* * *
61568872 ATATGAAGTTTATGT
1 AGATG-GGTTTATGG
61568887 AGATGGGTTTATGG
1 AGATGGGTTTATGG
61568901 A
1 A
61568902 TATAAAGTTT
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
14 12 0.52
15 11 0.48
ACGTcount: A:0.27, C:0.00, G:0.34, T:0.39
Consensus pattern (14 bp):
AGATGGGTTTATGG
Found at i:61568927 original size:29 final size:29
Alignment explanation
Indices: 61568858--61568917 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
61568848 AAGGATTCAA
*
61568858 AGATGGGTTTATGGATATGAAGTTTATGT
1 AGATGGGTTTATGGATATAAAGTTTATGT
*
61568887 AGATGGGTTTATGGATATAAAGTTTTTGT
1 AGATGGGTTTATGGATATAAAGTTTATGT
61568916 AG
1 AG
61568918 GTTTGGTTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.28, C:0.00, G:0.30, T:0.42
Consensus pattern (29 bp):
AGATGGGTTTATGGATATAAAGTTTATGT
Found at i:61570578 original size:28 final size:28
Alignment explanation
Indices: 61570546--61570646 Score: 103
Period size: 28 Copynumber: 3.6 Consensus size: 28
61570536 ATTGCATGAC
61570546 TATGAATGTGATTGGGGCTGATGGGTCA
1 TATGAATGTGATTGGGGCTGATGGGTCA
* * *
61570574 TATGAATATGATTGGGGCAGATGGTTCA
1 TATGAATGTGATTGGGGCTGATGGGTCA
* * * * * *
61570602 TTTGAAAGTGATTTAGGCCTAATGGGCCA
1 TATGAATGTGA-TTGGGGCTGATGGGTCA
*
61570631 TATGAATGAGATTGGG
1 TATGAATGTGATTGGG
61570647 CCTAAAGGAG
Statistics
Matches: 56, Mismatches: 16, Indels: 2
0.76 0.22 0.03
Matches are distributed among these distances:
28 37 0.66
29 19 0.34
ACGTcount: A:0.27, C:0.08, G:0.34, T:0.32
Consensus pattern (28 bp):
TATGAATGTGATTGGGGCTGATGGGTCA
Found at i:61576582 original size:18 final size:18
Alignment explanation
Indices: 61576539--61576584 Score: 56
Period size: 19 Copynumber: 2.5 Consensus size: 18
61576529 GGATTTTACT
* *
61576539 CAAGGTTTTTATTGTAAA
1 CAAGGTTTTTAATGAAAA
*
61576557 GAAGGGTTTTTAATGAAAA
1 CAA-GGTTTTTAATGAAAA
61576576 CAAGGTTTT
1 CAAGGTTTT
61576585 CGAAAAATAT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
18 8 0.35
19 15 0.65
ACGTcount: A:0.35, C:0.04, G:0.22, T:0.39
Consensus pattern (18 bp):
CAAGGTTTTTAATGAAAA
Found at i:61582351 original size:39 final size:39
Alignment explanation
Indices: 61582308--61582405 Score: 160
Period size: 39 Copynumber: 2.5 Consensus size: 39
61582298 CAGGACATAT
* *
61582308 TTCCAGCATGTAGCCTGCGGACCTTAAGTCCGGTTATAA
1 TTCCAGCATATAGCCTGCGGACCTTAAGTCCGGGTATAA
* *
61582347 TTCCAGGACATAGCCTGCGGACCTTAAGTCCGGGTATAA
1 TTCCAGCATATAGCCTGCGGACCTTAAGTCCGGGTATAA
61582386 TTCCAGCATATAGCCTGCGG
1 TTCCAGCATATAGCCTGCGG
61582406 GTCTTTAAGC
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 53 1.00
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (39 bp):
TTCCAGCATATAGCCTGCGGACCTTAAGTCCGGGTATAA
Found at i:61590259 original size:39 final size:39
Alignment explanation
Indices: 61590165--61590262 Score: 160
Period size: 39 Copynumber: 2.5 Consensus size: 39
61590155 CCAGACATAT
* * *
61590165 TTCCAGCACGTAGCCTACGGACCTTAAGTCCGGTTATAA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGGTATAA
61590204 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGGTATAA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGGTATAA
*
61590243 TTCCAGCATATAGCCTGCGG
1 TTCCAGCACATAGCCTGCGG
61590263 GTCTTTAAGC
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 55 1.00
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.24
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGGTATAA
Found at i:61597950 original size:55 final size:55
Alignment explanation
Indices: 61597863--61598119 Score: 214
Period size: 55 Copynumber: 4.8 Consensus size: 55
61597853 ATTAGGGTTT
*
61597863 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGGTTTCTAAGGC
* * * * * * *
61597918 AAGGATATCATTTAAGACCATGTCAAGACATGGC-ATTGATAAGCTTCTATAAGGAA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGGTT-TCTAAGG-C
* * * * *
61597974 AAGG-TCCCATGTAAGACTATGCCAAGGCATGAC-ATTGGTGA-G-TTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGGTTTC-TAAGGC
* * * *
61598026 AAAGATACCATGTAAGACCATGTCGAGACATGG-AAATGGTAA-GTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGGTTTCTAAGGC
* * * *
61598075 AAGGATACCACGTAAGACCATGACAAGTCATGACAA-TGGTAAGGT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGGT
61598120 ACCCGTGTAT
Statistics
Matches: 159, Mismatches: 35, Indels: 21
0.74 0.16 0.10
Matches are distributed among these distances:
49 33 0.21
50 4 0.03
52 6 0.04
53 35 0.22
54 13 0.08
55 64 0.40
56 4 0.03
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.23
Consensus pattern (55 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGGTTTCTAAGGC
Found at i:61598331 original size:16 final size:16
Alignment explanation
Indices: 61598310--61598340 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
61598300 ATAAAATTGA
61598310 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
61598326 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
61598341 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:61600907 original size:30 final size:30
Alignment explanation
Indices: 61600866--61600947 Score: 155
Period size: 30 Copynumber: 2.7 Consensus size: 30
61600856 GACCCACATA
61600866 GCCTGGCCACACGGGTGTGTGGAGCACACG
1 GCCTGGCCACACGGGTGTGTGGAGCACACG
*
61600896 GCCTAGCCACACGGGTGTGTGGAGCACACG
1 GCCTGGCCACACGGGTGTGTGGAGCACACG
61600926 GCCTGGCCACACGGGTGTGTGG
1 GCCTGGCCACACGGGTGTGTGG
61600948 GATCTCACAT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 50 1.00
ACGTcount: A:0.16, C:0.29, G:0.40, T:0.15
Consensus pattern (30 bp):
GCCTGGCCACACGGGTGTGTGGAGCACACG
Found at i:61601248 original size:198 final size:198
Alignment explanation
Indices: 61600892--61601249 Score: 540
Period size: 198 Copynumber: 1.8 Consensus size: 198
61600882 GTGTGGAGCA
* * **
61600892 CACGGCCTAGCCACACGGGTGTGTGGAGCACACGGCCTGGCCACACGGGTGTGTGGGATCTCACA
1 CACGGCCTAGCCACACGGGTGTGTAGAGCACACGGCCTGACCACACAAGTGTGTGGGATCTCACA
* * * *
61600957 TGGGCATGGGAAAAACGAAGGAAAACATACATGGCCTGGTGACATGGCCTTGTGACCCACACGGC
66 TGGGCATGGGAAAAACGAAGGAAAACACACACGGCCTGGCGACATGGCCTTATGACCCACACGGC
* *
61601022 CTAGACACACGGACGTGTCCTAGGCCATGTCAAACCTAAAGCTAATTTGTTTTCAAGTCAGAGAG
131 CTACACACACGGACATGTCCTAGGCCATGTCAAACCTAAAGCTAATTTGTTTTCAAGTCAGAGAG
61601087 TTG
196 TTG
*
61601090 CACGGCCTGGCCACACGGGTGTGTAGAGCACACGGCCTGACCACACAAGTGTGTGGGATCTCACA
1 CACGGCCTAGCCACACGGGTGTGTAGAGCACACGGCCTGACCACACAAGTGTGTGGGATCTCACA
** * * *
61601155 TGGGTGTGGGAGAAGCGAAGGAAAACACACGCGGCCTGGCGACATGGCCTTATGACCCACACGGC
66 TGGGCATGGGAAAAACGAAGGAAAACACACACGGCCTGGCGACATGGCCTTATGACCCACACGGC
61601220 CTACACACAC-GAGCATGTCC-ATGGCCATGT
131 CTACACACACGGA-CATGTCCTA-GGCCATGT
61601250 GAAAACTGGA
Statistics
Matches: 142, Mismatches: 16, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
197 3 0.02
198 139 0.98
ACGTcount: A:0.26, C:0.27, G:0.30, T:0.17
Consensus pattern (198 bp):
CACGGCCTAGCCACACGGGTGTGTAGAGCACACGGCCTGACCACACAAGTGTGTGGGATCTCACA
TGGGCATGGGAAAAACGAAGGAAAACACACACGGCCTGGCGACATGGCCTTATGACCCACACGGC
CTACACACACGGACATGTCCTAGGCCATGTCAAACCTAAAGCTAATTTGTTTTCAAGTCAGAGAG
TTG
Found at i:61601392 original size:31 final size:29
Alignment explanation
Indices: 61601357--61601428 Score: 90
Period size: 31 Copynumber: 2.3 Consensus size: 29
61601347 ATTCTTATAC
*
61601357 TTATATTTTTATTTTTTTATATTTTAAATTT
1 TTATATTTTTATTATTTTA-ATTTT-AATTT
61601388 TTATATACTTTTATTATTTTAATTTTAATTT
1 TTATAT--TTTTATTATTTTAATTTTAATTT
*
61601419 TTCTATTTTT
1 TTATATTTTT
61601429 CTAGCTTTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
29 4 0.11
31 16 0.43
32 5 0.14
33 12 0.32
ACGTcount: A:0.25, C:0.03, G:0.00, T:0.72
Consensus pattern (29 bp):
TTATATTTTTATTATTTTAATTTTAATTT
Found at i:61601401 original size:33 final size:31
Alignment explanation
Indices: 61601358--61601420 Score: 90
Period size: 33 Copynumber: 2.0 Consensus size: 31
61601348 TTCTTATACT
* *
61601358 TATATTTTTATTTTTTTATATTTTAAATTTTTA
1 TATACTTTTATTATTTTA-ATTTT-AATTTTTA
61601391 TATACTTTTATTATTTTAATTTTAATTTTT
1 TATACTTTTATTATTTTAATTTTAATTTTT
61601421 CTATTTTTCT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 7 0.25
32 5 0.18
33 16 0.57
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (31 bp):
TATACTTTTATTATTTTAATTTTAATTTTTA
Found at i:61603905 original size:22 final size:24
Alignment explanation
Indices: 61603880--61603936 Score: 64
Period size: 27 Copynumber: 2.3 Consensus size: 24
61603870 CCGTGACCCA
61603880 ATTACA-GC-TAGCCCAACTAAAC
1 ATTACACGCATAGCCCAACTAAAC
*
61603902 ATTACACGGCAATTTGCCCAACTAAAC
1 ATTACAC-GC-A-TAGCCCAACTAAAC
61603929 ATTACACG
1 ATTACACG
61603937 GCAATTTTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
22 6 0.21
24 2 0.07
26 1 0.03
27 20 0.69
ACGTcount: A:0.39, C:0.30, G:0.11, T:0.21
Consensus pattern (24 bp):
ATTACACGCATAGCCCAACTAAAC
Found at i:61603928 original size:27 final size:27
Alignment explanation
Indices: 61603890--61603943 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
61603880 ATTACAGCTA
61603890 GCCCAACTAAACATTACACGGCAATTT
1 GCCCAACTAAACATTACACGGCAATTT
61603917 GCCCAACTAAACATTACACGGCAATTT
1 GCCCAACTAAACATTACACGGCAATTT
61603944 TAACCCATCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.37, C:0.30, G:0.11, T:0.22
Consensus pattern (27 bp):
GCCCAACTAAACATTACACGGCAATTT
Found at i:61605504 original size:16 final size:16
Alignment explanation
Indices: 61605485--61605559 Score: 63
Period size: 14 Copynumber: 4.9 Consensus size: 16
61605475 TTTAACAGTA
61605485 TATTATTTCATATTAT
1 TATTATTTCATATTAT
61605501 TATTA--TC-TATTAT
1 TATTATTTCATATTAT
*
61605514 ATATTTTTTCATATATAT
1 -TATTATTTCATAT-TAT
* *
61605532 CATTA-TTCACATTAT
1 TATTATTTCATATTAT
61605547 TA-T-TTTCATATTA
1 TATTATTTCATATTA
61605560 ATAAAATATT
Statistics
Matches: 47, Mismatches: 6, Indels: 14
0.70 0.09 0.21
Matches are distributed among these distances:
13 6 0.13
14 15 0.32
15 4 0.09
16 13 0.28
17 6 0.13
18 3 0.06
ACGTcount: A:0.32, C:0.09, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTCATATTAT
Found at i:61616002 original size:46 final size:45
Alignment explanation
Indices: 61615954--61616127 Score: 181
Period size: 46 Copynumber: 3.8 Consensus size: 45
61615944 TTTGGGCATT
* *
61615954 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTT
1 CGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAA-GTC
* *** * *
61616000 CGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-TC
1 CGAACTCGTTGAGTTGAGTCCAAGTTC-ACTTATG-GA-T-GCGAAGTC
* *
61616047 CGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCC
1 CGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAA-GTC
*
61616093 CGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGG
1 CGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGG
61616128 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 67 0.63
47 30 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (45 bp):
CGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAAGTC
Found at i:61616107 original size:93 final size:93
Alignment explanation
Indices: 61615948--61616119 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
61615938 AGGATGTTTG
* * * **
61615948 GGCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
*
61616013 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCAAGTTCGAGAGATGTAACTA
* *
61616041 GGCATCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
61616106 TTGAGTCCAAGTTC
66 TTGAGTCCAAGTTC
61616120 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCAAGTTCGAGAGATGTAACTA
Found at i:61618933 original size:43 final size:42
Alignment explanation
Indices: 61618838--61618999 Score: 120
Period size: 43 Copynumber: 3.8 Consensus size: 42
61618828 ACTGAGATGT
* * * *
61618838 GATTACATGCAAGTCCATGTCTGGGA-ATTGGCATTGTATTGG
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATT-G
61618880 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTATAT-
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCG-TAT-TG
**
61618923 GATTTTGTGTAAGACCATAG-CTGGG-CTATTGGCATCG-ATATG
1 GATTACGTGTAAGACCAT-GTCTGGGAC-ATTGGCATCGTAT-TG
* * * * *
61618965 AGGTAACATGTAAGACCATATCTGGGATA-TGGCAT
1 -GATTACGTGTAAGACCATGTCTGGGACATTGGCAT
61619000 TTTATGAGTT
Statistics
Matches: 98, Mismatches: 13, Indels: 18
0.76 0.10 0.14
Matches are distributed among these distances:
41 4 0.04
42 30 0.31
43 59 0.60
44 4 0.04
45 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (42 bp):
GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATTG
Found at i:61636285 original size:6 final size:6
Alignment explanation
Indices: 61636264--61636303 Score: 53
Period size: 6 Copynumber: 6.5 Consensus size: 6
61636254 GTTTAAAAAC
* *
61636264 TTTTTA TTTATTA TTTTTA TTTTCA TTTTTA TCTTTA TTT
1 TTTTTA TTT-TTA TTTTTA TTTTTA TTTTTA TTTTTA TTT
61636304 ATCTTATTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
6 23 0.79
7 6 0.21
ACGTcount: A:0.17, C:0.05, G:0.00, T:0.78
Consensus pattern (6 bp):
TTTTTA
Found at i:61637428 original size:96 final size:96
Alignment explanation
Indices: 61637311--61637485 Score: 323
Period size: 96 Copynumber: 1.8 Consensus size: 96
61637301 TTTGAGCCTA
61637311 ACAAGCCATTAATTGATTTACCCTCAATATTAACCCATAACCCATTATTGTTGAAATCCCCTAAT
1 ACAAGCCATTAATTGATTTACCCTCAATATTAACCCATAACCCATTATTGTTGAAATCCCCTAAT
61637376 TTGATCCCTATTTTAATTACTTTATGATTTT
66 TTGATCCCTATTTTAATTACTTTATGATTTT
* *
61637407 ACAAGCCATTAATTGATTTACCCTTAATATTAACCCATAACCCATTGTTGTTGAAATCCCCTAAT
1 ACAAGCCATTAATTGATTTACCCTCAATATTAACCCATAACCCATTATTGTTGAAATCCCCTAAT
*
61637472 TTGATCTCTATTTT
66 TTGATCCCTATTTT
61637486 TGTCGAGATT
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
96 76 1.00
ACGTcount: A:0.31, C:0.22, G:0.07, T:0.40
Consensus pattern (96 bp):
ACAAGCCATTAATTGATTTACCCTCAATATTAACCCATAACCCATTATTGTTGAAATCCCCTAAT
TTGATCCCTATTTTAATTACTTTATGATTTT
Found at i:61641839 original size:27 final size:27
Alignment explanation
Indices: 61641801--61641854 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
61641791 AACTGCTAGA
*
61641801 AACAGTATATGTGGCAAAGCCACCAGT
1 AACAGTATATGTGACAAAGCCACCAGT
* *
61641828 AACAGTGA-ATGTGACATAGTCACCAGT
1 AACAGT-ATATGTGACAAAGCCACCAGT
61641855 TCAGTACTTC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.20
Consensus pattern (27 bp):
AACAGTATATGTGACAAAGCCACCAGT
Found at i:61642354 original size:17 final size:18
Alignment explanation
Indices: 61642332--61642367 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
61642322 TTCATCTGTG
61642332 TGGGCCAACA-AGCCCAT
1 TGGGCCAACACAGCCCAT
*
61642349 TGGGCCCACACAGCCCAT
1 TGGGCCAACACAGCCCAT
61642367 T
1 T
61642368 TAGCCCAGCG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.25, C:0.39, G:0.22, T:0.14
Consensus pattern (18 bp):
TGGGCCAACACAGCCCAT
Found at i:61643655 original size:17 final size:18
Alignment explanation
Indices: 61643633--61643666 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
61643623 CACATTGAAG
61643633 TGTTTT-AGTGAAAACCT
1 TGTTTTCAGTGAAAACCT
*
61643650 TGTTTTCATTGAAAACC
1 TGTTTTCAGTGAAAACC
61643667 CTTCCTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.41
Consensus pattern (18 bp):
TGTTTTCAGTGAAAACCT
Found at i:61644809 original size:28 final size:28
Alignment explanation
Indices: 61644770--61644823 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
61644760 ATTCGTATGA
* *
61644770 CCCATTAGGCCCAGATTACATTTATATAG
1 CCCATTAGGCCCAAATCACA-TTATATAG
61644799 CCCATTA-GCCCAAATCACATTATAT
1 CCCATTAGGCCCAAATCACATTATAT
61644824 TCATGCTCAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 6 0.26
28 10 0.43
29 7 0.30
ACGTcount: A:0.33, C:0.28, G:0.09, T:0.30
Consensus pattern (28 bp):
CCCATTAGGCCCAAATCACATTATATAG
Found at i:61647301 original size:13 final size:13
Alignment explanation
Indices: 61647283--61647308 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
61647273 AAAAAAAATA
61647283 AAATTATTATATT
1 AAATTATTATATT
61647296 AAATTATTATATT
1 AAATTATTATATT
61647309 TTTAATTTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
AAATTATTATATT
Found at i:61647523 original size:23 final size:24
Alignment explanation
Indices: 61647497--61647541 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
61647487 TTATTATGCC
61647497 AATTT-TATAAATAAAAAACAACA
1 AATTTGTATAAATAAAAAACAACA
61647520 AATTTGTATAAATAAAAAACAA
1 AATTTGTATAAATAAAAAACAA
61647542 AATAATTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
23 5 0.24
24 16 0.76
ACGTcount: A:0.64, C:0.07, G:0.02, T:0.27
Consensus pattern (24 bp):
AATTTGTATAAATAAAAAACAACA
Found at i:61647557 original size:29 final size:24
Alignment explanation
Indices: 61647497--61647548 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
61647487 TTATTATGCC
*
61647497 AATTT-TATAAATAAAAAACAACA
1 AATTTGTATAAATAAAAAACAAAA
61647520 AATTTGTATAAATAAAAAACAAAA
1 AATTTGTATAAATAAAAAACAAAA
61647544 TAATT
1 -AATT
61647549 AAATAGTATC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 5 0.19
24 17 0.65
25 4 0.15
ACGTcount: A:0.63, C:0.06, G:0.02, T:0.29
Consensus pattern (24 bp):
AATTTGTATAAATAAAAAACAAAA
Found at i:61648131 original size:11 final size:11
Alignment explanation
Indices: 61648115--61648140 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
61648105 TATGTACATA
61648115 CATTTATTTTG
1 CATTTATTTTG
61648126 CATTTATTTTG
1 CATTTATTTTG
61648137 CATT
1 CATT
61648141 AACTCTTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.19, C:0.12, G:0.08, T:0.62
Consensus pattern (11 bp):
CATTTATTTTG
Found at i:61655819 original size:20 final size:20
Alignment explanation
Indices: 61655747--61655821 Score: 80
Period size: 20 Copynumber: 3.6 Consensus size: 20
61655737 AACTACGTCA
61655747 TCTGAGATT-ATGAGATGTGG
1 TCTGAG-TTCATGAGATGTGG
* *
61655767 TCTGAGTTCATGAAATACGTGA
1 TCTGAGTTCATGAGAT--GTGG
**
61655789 TCTGAACTCATGAGATGTGG
1 TCTGAGTTCATGAGATGTGG
61655809 TCTGAGTTCATGA
1 TCTGAGTTCATGA
61655822 TATATGTAAC
Statistics
Matches: 44, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
19 2 0.05
20 26 0.59
22 16 0.36
ACGTcount: A:0.27, C:0.12, G:0.28, T:0.33
Consensus pattern (20 bp):
TCTGAGTTCATGAGATGTGG
Found at i:61666351 original size:18 final size:19
Alignment explanation
Indices: 61666311--61666356 Score: 76
Period size: 19 Copynumber: 2.5 Consensus size: 19
61666301 TGGGCTGAGG
61666311 ACACGGGCGTGTCTGAGCC
1 ACACGGGCGTGTCTGAGCC
*
61666330 ACACGGGCGTGTGTGA-CC
1 ACACGGGCGTGTCTGAGCC
61666348 ACACGGGCG
1 ACACGGGCG
61666357 AGTGACTCTT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
18 11 0.42
19 15 0.58
ACGTcount: A:0.17, C:0.30, G:0.39, T:0.13
Consensus pattern (19 bp):
ACACGGGCGTGTCTGAGCC
Found at i:61666669 original size:42 final size:42
Alignment explanation
Indices: 61666605--61666709 Score: 158
Period size: 42 Copynumber: 2.5 Consensus size: 42
61666595 TGGGTGTTAC
* *
61666605 ATATGGTCTTACAAGAAATCTCATA-TCGATGCCATATCCCAG
1 ATATGGTCTTACACGAAGTCTCATACT-GATGCCATATCCCAG
*
61666647 ATATGGTCTTACACGAAGTCTCATACTGATGTCATATCCCAG
1 ATATGGTCTTACACGAAGTCTCATACTGATGCCATATCCCAG
*
61666689 ATATGGTCTTACACGTAGTCT
1 ATATGGTCTTACACGAAGTCT
61666710 TAATAACCTT
Statistics
Matches: 58, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
42 57 0.98
43 1 0.02
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (42 bp):
ATATGGTCTTACACGAAGTCTCATACTGATGCCATATCCCAG
Found at i:61671296 original size:17 final size:18
Alignment explanation
Indices: 61671274--61671310 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
61671264 TTAAATTAAA
*
61671274 ATATTTTAAA-ATATTTT
1 ATATTTTAAATAAATTTT
61671291 ATATTTTAAATAAATTTT
1 ATATTTTAAATAAATTTT
61671309 AT
1 AT
61671311 GATTGTATGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
ATATTTTAAATAAATTTT
Found at i:61689806 original size:31 final size:31
Alignment explanation
Indices: 61689768--61689831 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
61689758 CCTTTTCATA
61689768 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
61689799 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
61689830 TT
1 TT
61689832 ACTGTAAACG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:61690070 original size:23 final size:24
Alignment explanation
Indices: 61690039--61690118 Score: 128
Period size: 23 Copynumber: 3.4 Consensus size: 24
61690029 CTAGAGGCCT
*
61690039 AGCCTCTTTTAACAACTGGGGCA-A
1 AGCC-CTTTTAATAACTGGGGCATA
61690063 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
61690087 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
61690110 AGCCCTTTT
1 AGCCCTTTT
61690119 GCACTTCACT
Statistics
Matches: 53, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
23 40 0.75
24 13 0.25
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:61690191 original size:9 final size:9
Alignment explanation
Indices: 61690177--61690233 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
61690167 ATCTCATGTG
61690177 CATATCATA
1 CATATCATA
*
61690186 CATATCATGTG
1 CATATCA--TA
61690197 CATATCATA
1 CATATCATA
* *
61690206 CATGTCATGTG
1 CATATCA--TA
61690217 CATATCATA
1 CATATCATA
61690226 CATATCAT
1 CATATCAT
61690234 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:61690193 original size:20 final size:20
Alignment explanation
Indices: 61690165--61690235 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
61690155 GCATTTATGA
*
61690165 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
61690185 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
61690205 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
61690225 ACATATCATGT
1 ACATATCATGT
61690236 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:61690200 original size:11 final size:11
Alignment explanation
Indices: 61690170--61690224 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
61690160 TATGAACATC
61690170 TCATGTGCATA
1 TCATGTGCATA
*
61690181 TCA--TACATA
1 TCATGTGCATA
61690190 TCATGTGCATA
1 TCATGTGCATA
* *
61690201 TCA--TACATG
1 TCATGTGCATA
61690210 TCATGTGCATA
1 TCATGTGCATA
61690221 TCAT
1 TCAT
61690225 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:61690300 original size:25 final size:25
Alignment explanation
Indices: 61690272--61690319 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
61690262 ATATATAAAC
* *
61690272 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
61690297 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
61690320 CATGTTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTTA
Found at i:61696594 original size:18 final size:18
Alignment explanation
Indices: 61696571--61696611 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
61696561 CCTTCCGCGA
61696571 CCACGTCCGCGGCCTCAT
1 CCACGTCCGCGGCCTCAT
*
61696589 CCACGTCCGCGGCCTCGT
1 CCACGTCCGCGGCCTCAT
61696607 CCACG
1 CCACG
61696612 AGCTCCTCTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.10, C:0.51, G:0.24, T:0.15
Consensus pattern (18 bp):
CCACGTCCGCGGCCTCAT
Found at i:61697887 original size:31 final size:31
Alignment explanation
Indices: 61697837--61697897 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 31
61697827 TTTCATATTT
*
61697837 CATATTTCATAACATTGGGCCAAAGCCTTTC
1 CATATTTCATAACACTGGGCCAAAGCCTTTC
** * *
61697868 CATATTTCATATTACTGGGCCGAAGTCTTT
1 CATATTTCATAACACTGGGCCAAAGCCTTT
61697898 ACTGTAAACG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (31 bp):
CATATTTCATAACACTGGGCCAAAGCCTTTC
Found at i:61698138 original size:23 final size:23
Alignment explanation
Indices: 61698091--61698183 Score: 116
Period size: 23 Copynumber: 4.0 Consensus size: 23
61698081 GCTTTATCAT
**
61698091 ATAACTGGAGGCCTAGCCTCTTTTA
1 ATAACTGG-GGCAAAGCC-CTTTTA
*
61698116 ACAACTGGGGCAAAGCCCTTTTA
1 ATAACTGGGGCAAAGCCCTTTTA
*
61698139 ATGACTGGGGCAAAGCCC-TTTA
1 ATAACTGGGGCAAAGCCCTTTTA
61698161 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCA-AAGCCCTTTT
61698184 GCACTTCCTC
Statistics
Matches: 60, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
22 15 0.25
23 28 0.47
24 10 0.17
25 7 0.12
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.27
Consensus pattern (23 bp):
ATAACTGGGGCAAAGCCCTTTTA
Found at i:61698255 original size:9 final size:9
Alignment explanation
Indices: 61698241--61698297 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
61698231 ATCTCATGTG
61698241 CATATCATA
1 CATATCATA
*
61698250 CATATCATGTG
1 CATATCA--TA
61698261 CATATCATA
1 CATATCATA
* *
61698270 CATGTCATGTG
1 CATATCA--TA
61698281 CATATCATA
1 CATATCATA
61698290 CATATCAT
1 CATATCAT
61698298 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:61698257 original size:20 final size:20
Alignment explanation
Indices: 61698229--61698299 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
61698219 GAATTTATGA
*
61698229 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
61698249 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
61698269 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
61698289 ACATATCATGT
1 ACATATCATGT
61698300 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:61698264 original size:11 final size:11
Alignment explanation
Indices: 61698234--61698288 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
61698224 TATGAACATC
61698234 TCATGTGCATA
1 TCATGTGCATA
*
61698245 TCA--TACATA
1 TCATGTGCATA
61698254 TCATGTGCATA
1 TCATGTGCATA
* *
61698265 TCA--TACATG
1 TCATGTGCATA
61698274 TCATGTGCATA
1 TCATGTGCATA
61698285 TCAT
1 TCAT
61698289 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:61701515 original size:16 final size:16
Alignment explanation
Indices: 61701494--61701526 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
61701484 GGATATGTAT
61701494 AAAGAGTAAATCAATA
1 AAAGAGTAAATCAATA
61701510 AAAGAGTAAATCAATA
1 AAAGAGTAAATCAATA
61701526 A
1 A
61701527 TAGATTTAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.64, C:0.06, G:0.12, T:0.18
Consensus pattern (16 bp):
AAAGAGTAAATCAATA
Found at i:61702704 original size:21 final size:21
Alignment explanation
Indices: 61702678--61702719 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
61702668 CATTGACCAG
61702678 CAATTAAACATA-CTCAAAACA
1 CAATTAAACA-AGCTCAAAACA
61702699 CAATTAAACAAGCTCAAAACA
1 CAATTAAACAAGCTCAAAACA
61702720 TCCCAAAACA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 1 0.05
21 19 0.95
ACGTcount: A:0.57, C:0.24, G:0.02, T:0.17
Consensus pattern (21 bp):
CAATTAAACAAGCTCAAAACA
Found at i:61713039 original size:47 final size:45
Alignment explanation
Indices: 61712970--61713187 Score: 172
Period size: 47 Copynumber: 4.7 Consensus size: 45
61712960 GGGGTAAGGT
*
61712970 GCCGATGCCGTGTCCCAGACATGGTCTTACACTGGCTTACATCTCAA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCAA
* * * * *
61713017 GCCGAAGCCATGTCCTAGACATGGACTTACACTGACTAACATCTCATA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCA-A
* * * * *
61713065 GCCGACGCATGTCCCAGCCA--TCTTACACTAGCTTACATCTTGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATC-TCAA
* * * * *
61713109 GCCGATGCATGTCCCAGACATGTATTACACTAGCACT-CGTCTTAA
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC-TTACATCTCAA
*
61713154 TGCCGATGTCGTGTCCCAGACATGGTCTTACACT
1 -GCCGATG-CATGTCCCAGACAT-GTCTTACACT
61713188 AGCTCTTTCA
Statistics
Matches: 139, Mismatches: 24, Indels: 15
0.78 0.13 0.08
Matches are distributed among these distances:
44 33 0.24
45 4 0.03
46 21 0.15
47 65 0.47
48 16 0.12
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCAA
Found at i:61716502 original size:26 final size:26
Alignment explanation
Indices: 61716473--61716523 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
61716463 AATCATTCCC
* *
61716473 TGATACCATTTAACTTGTAACACCCT
1 TGATACAACTTAACTTGTAACACCCT
61716499 TGATACAACTTAACTTGTAACACCC
1 TGATACAACTTAACTTGTAACACCC
61716524 GACCCGATCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.27, G:0.08, T:0.31
Consensus pattern (26 bp):
TGATACAACTTAACTTGTAACACCCT
Found at i:61717904 original size:20 final size:20
Alignment explanation
Indices: 61717876--61717916 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
61717866 AGGGGCACAC
61717876 GCCCATGTGGCCTGGGACAT
1 GCCCATGTGGCCTGGGACAT
* *
61717896 GCCCGTGTGGCTTGGGACAT
1 GCCCATGTGGCCTGGGACAT
61717916 G
1 G
61717917 GTCATGGGGC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.12, C:0.27, G:0.39, T:0.22
Consensus pattern (20 bp):
GCCCATGTGGCCTGGGACAT
Found at i:61725138 original size:20 final size:20
Alignment explanation
Indices: 61725113--61725157 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
61725103 AGATAGGGGC
61725113 ACATGCCCGTGTGGCCTGGG
1 ACATGCCCGTGTGGCCTGGG
*
61725133 ACATGCCCGTGTGGCTTGGG
1 ACATGCCCGTGTGGCCTGGG
61725153 ACATG
1 ACATG
61725158 TCTGTGGGGC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.13, C:0.27, G:0.38, T:0.22
Consensus pattern (20 bp):
ACATGCCCGTGTGGCCTGGG
Found at i:61726648 original size:41 final size:41
Alignment explanation
Indices: 61726591--61726673 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
61726581 CAACTCTTAA
61726591 ATTTACAGCATAAAACACTAATTAGAACATCTTCTCAATTC
1 ATTTACAGCATAAAACACTAATTAGAACATCTTCTCAATTC
*
61726632 ATTTACAGCATAAAACACTAATTATAACATCTTCTCAATTC
1 ATTTACAGCATAAAACACTAATTAGAACATCTTCTCAATTC
61726673 A
1 A
61726674 ATCCCTAATA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.42, C:0.22, G:0.04, T:0.33
Consensus pattern (41 bp):
ATTTACAGCATAAAACACTAATTAGAACATCTTCTCAATTC
Found at i:61728860 original size:26 final size:27
Alignment explanation
Indices: 61728831--61728953 Score: 110
Period size: 27 Copynumber: 4.6 Consensus size: 27
61728821 TTAGTTTACC
*
61728831 AAATTACTGAAATACCCCCAG-TTGTA
1 AAATTACCGAAATACCCCCAGTTTGTA
* *
61728857 AAATTACC-AAAGTA-CCCCGGTTTATA
1 AAATTACCGAAA-TACCCCCAGTTTGTA
* * *
61728883 AAATTACCCAAATATCCTC-GATTTGTA
1 AAATTACCGAAATACCCCCAG-TTTGTA
* *
61728910 AAATTACCGAAATACCCTCAGTTTGCA
1 AAATTACCGAAATACCCCCAGTTTGTA
**
61728937 AAATTATTGAAATACCC
1 AAATTACCGAAATACCC
61728954 TCGACATGTA
Statistics
Matches: 81, Mismatches: 10, Indels: 11
0.79 0.10 0.11
Matches are distributed among these distances:
25 8 0.10
26 24 0.30
27 48 0.59
28 1 0.01
ACGTcount: A:0.39, C:0.23, G:0.10, T:0.28
Consensus pattern (27 bp):
AAATTACCGAAATACCCCCAGTTTGTA
Found at i:61728911 original size:27 final size:27
Alignment explanation
Indices: 61728852--61728984 Score: 112
Period size: 27 Copynumber: 5.0 Consensus size: 27
61728842 ATACCCCCAG
*
61728852 TTGTAAAATTA-CCAAAGTACCC-CGGT
1 TTGTAAAATTACCCAAA-TACCCTCGAT
* *
61728878 TTATAAAATTACCCAAATATCCTCGAT
1 TTGTAAAATTACCCAAATACCCTCGAT
*
61728905 TTGTAAAATTACCGAAATACCCTC-AGT
1 TTGTAAAATTACCCAAATACCCTCGA-T
* *** *
61728932 TTGCAAAATTATTGAAATACCCTCGAC
1 TTGTAAAATTACCCAAATACCCTCGAT
* *
61728959 ATGTAAAATTA-TCAAAGTACCCTCGA
1 TTGTAAAATTACCCAAA-TACCCTCGA
61728985 ATTACAAAAA
Statistics
Matches: 89, Mismatches: 13, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
26 19 0.21
27 69 0.78
28 1 0.01
ACGTcount: A:0.38, C:0.22, G:0.11, T:0.29
Consensus pattern (27 bp):
TTGTAAAATTACCCAAATACCCTCGAT
Found at i:61728957 original size:54 final size:54
Alignment explanation
Indices: 61728823--61728982 Score: 173
Period size: 54 Copynumber: 3.0 Consensus size: 54
61728813 AGAATACTTT
* * *
61728823 AGTTTACCAAATTACTGAAATACCC-CCAGTTGTAAAATTACCAAAGTACCC-C
1 AGTTTACAAAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCTC
* * ** * *
61728875 GGTTTATAAAATTACCCAAATATCCTCGATTTGTAAAATTACCGAAA-TACCCTC
1 AGTTTACAAAATTACTGAAATACCCTCGACTTGTAAAATTACC-AAAGTACCCTC
* * * *
61728929 AGTTTGCAAAATTATTGAAATACCCTCGACATGTAAAATTATCAAAGTACCCTC
1 AGTTTACAAAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCTC
61728983 GAATTACAAA
Statistics
Matches: 86, Mismatches: 18, Indels: 6
0.78 0.16 0.05
Matches are distributed among these distances:
52 19 0.22
53 23 0.27
54 44 0.51
ACGTcount: A:0.38, C:0.23, G:0.10, T:0.29
Consensus pattern (54 bp):
AGTTTACAAAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCTC
Found at i:61729025 original size:83 final size:81
Alignment explanation
Indices: 61728938--61729108 Score: 189
Period size: 83 Copynumber: 2.1 Consensus size: 81
61728928 CAGTTTGCAA
* *
61728938 AATTATTGAAATACCCTCGACATGTAAAATTATCAAAGTACCCTCGAATTACAAAAAATTACTGT
1 AATTATTGAAATACCCTCGACATATAAAATTATCAAAGTACCCTCGAATTAC--AAAATTACCGT
*
61729003 TTTACCCTTGATTTACAG
64 TTTACCATTGATTTACAG
* *** ** **** *
61729021 AATTACTGTTTTACCCTCGATTTATAAAATTATCGTTTTACCCTCGATTTACAAAATTACCGTTT
1 AATTATTGAAATACCCTCGACATATAAAATTATCAAAGTACCCTCGAATTACAAAATTACCGTTT
*
61729086 TACCATTGATTTATAG
66 TACCATTGATTTACAG
61729102 AATTATT
1 AATTATT
61729109 ATTTTACCCT
Statistics
Matches: 72, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
81 32 0.44
83 40 0.56
ACGTcount: A:0.35, C:0.18, G:0.09, T:0.39
Consensus pattern (81 bp):
AATTATTGAAATACCCTCGACATATAAAATTATCAAAGTACCCTCGAATTACAAAATTACCGTTT
TACCATTGATTTACAG
Found at i:61729031 original size:27 final size:27
Alignment explanation
Indices: 61728976--61729332 Score: 358
Period size: 27 Copynumber: 13.1 Consensus size: 27
61728966 ATTATCAAAG
*
61728976 TACCCTCGAATTACAAAAAATTACTGTTT
1 TACCCTCGATTTAC--AAAATTACTGTTT
* *
61729005 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
61729032 TACCCTCGATTTATAAAATTA-TCGTTT
1 TACCCTCGATTTACAAAATTACT-GTTT
*
61729059 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * * * * *
61729086 TACCATTGATTTATAGAATTATTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * * *
61729113 TACCCTTGATTTATAGAATTATTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
61729140 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * **
61729167 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACTGTTT
** * *
61729194 TACCCTCGATTGGCAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * *
61729221 TACCTTCAATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
61729248 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * *
61729275 TACCC-CTAATTTATAAAATTACCGTTT
1 TACCCTC-GATTTACAAAATTACTGTTT
* * **
61729302 TACCCTTGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTGTTT
61729329 TACC
1 TACC
61729333 TCTAGGGTGT
Statistics
Matches: 281, Mismatches: 43, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
26 2 0.01
27 267 0.95
29 12 0.04
ACGTcount: A:0.31, C:0.20, G:0.07, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTGTTT
Found at i:61729114 original size:81 final size:81
Alignment explanation
Indices: 61728976--61729332 Score: 412
Period size: 81 Copynumber: 4.4 Consensus size: 81
61728966 ATTATCAAAG
* * *
61728976 TACCCTCGAATTACAAAAAATTACTGTTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCGA
1 TACCCTCGATTTAC--AAAATTACTGTTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGA
61729041 TTTATAAAATTATCGTTT
64 TTTATAAAATTATCGTTT
* * * * * *
61729059 TACCCTCGATTTACAAAATTACCGTTTTACCATTGATTTATAGAATTATTATTTTACCCTTGATT
1 TACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATT
* *
61729124 TATAGAATTATTGTTT
66 TATAAAATTATCGTTT
* *
61729140 TACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATT
1 TACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATT
*** * *
61729205 GGCAGAATTA-CTATTT
66 TATAAAATTATC-GTTT
* * * * *
61729221 TACCTTCAATTTACAAAATTACTATTTTACCCTCGATTTACAAAATTACTATTTTACCC-CTAAT
1 TACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTACAGAATTACTATTTTACCCTC-GAT
*
61729285 TTATAAAATTACCGTTT
65 TTATAAAATTATCGTTT
* * **
61729302 TACCCTTGATTTATAAAATTACCATTTTACC
1 TACCCTCGATTTACAAAATTACTGTTTTACC
61729333 TCTAGGGTGT
Statistics
Matches: 234, Mismatches: 37, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
80 1 0.00
81 219 0.94
82 1 0.00
83 13 0.06
ACGTcount: A:0.31, C:0.20, G:0.07, T:0.42
Consensus pattern (81 bp):
TACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATT
TATAAAATTATCGTTT
Found at i:61729689 original size:26 final size:27
Alignment explanation
Indices: 61729660--61729719 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
61729650 CCACATATAT
*
61729660 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
61729686 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
61729713 ATATCTG
1 ATATCTG
61729720 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:61729883 original size:31 final size:31
Alignment explanation
Indices: 61729838--61729917 Score: 106
Period size: 31 Copynumber: 2.6 Consensus size: 31
61729828 TTGCATTCAC
* * * *
61729838 ATTCTGATTTTGATTCTGTTACCTGATACTT
1 ATTCTGATTCTGATTCTATCACCTGATACTG
* *
61729869 ATTTTGATTCTGATTCTATCACCTGATTCTG
1 ATTCTGATTCTGATTCTATCACCTGATACTG
61729900 ATTCTGATTCTGATTCTA
1 ATTCTGATTCTGATTCTA
61729918 GTTCTAATAA
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.20, C:0.17, G:0.12, T:0.50
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTATCACCTGATACTG
Found at i:61729884 original size:6 final size:6
Alignment explanation
Indices: 61729838--61729916 Score: 63
Period size: 6 Copynumber: 12.8 Consensus size: 6
61729828 TTGCATTCAC
* * * *
61729838 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTT ATTTTG ATTCTG ATTCT-
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
*
61729886 ATCACCTG ATTCTG ATTCTG ATTCTG ATTCT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCT
61729917 AGTTCTAATA
Statistics
Matches: 57, Mismatches: 10, Indels: 12
0.72 0.13 0.15
Matches are distributed among these distances:
5 4 0.07
6 45 0.79
7 5 0.09
8 3 0.05
ACGTcount: A:0.19, C:0.18, G:0.13, T:0.51
Consensus pattern (6 bp):
ATTCTG
Found at i:61734217 original size:27 final size:27
Alignment explanation
Indices: 61734180--61734502 Score: 273
Period size: 27 Copynumber: 12.0 Consensus size: 27
61734170 TAAGACCCCG
* * * *
61734180 GTTTGGAAAATTACAAAAATACTCCTG
1 GTTTGTAAAATTACCAAAATACCCCTA
*
61734207 GTTTGTAAAATTACCGAAATACCCCTA
1 GTTTGTAAAATTACCAAAATACCCCTA
* *
61734234 -TTTGTAAAATTACTAAAATACCCC-C
1 GTTTGTAAAATTACCAAAATACCCCTA
*
61734259 GTTTGTAAAATTACCAAAATACCCCCA
1 GTTTGTAAAATTACCAAAATACCCCTA
* * *
61734286 GTTTGTAAAATTATCGAAATTCCCCTA
1 GTTTGTAAAATTACCAAAATACCCCTA
*
61734313 ATTTGTAAAATTACCAAAATACCCCTA
1 GTTTGTAAAATTACCAAAATACCCCTA
* * *
61734340 ATTTGTAAAATTACCAAAATA-CTCTT
1 GTTTGTAAAATTACCAAAATACCCCTA
* *
61734366 GATTTGTAAAATTACCGAAATACCCCTC
1 G-TTTGTAAAATTACCAAAATACCCCTA
*** *
61734394 GTTTGTAAAATTAATTGAAATA-CCCTT
1 GTTTGTAAAATT-ACCAAAATACCCCTA
** * * *
61734421 GTAGGGTAAAATTAACGAAATA-CCCTT
1 GT-TTGTAAAATTACCAAAATACCCCTA
* * *
61734448 GTAGTGTAAAATTATCAAAATATCCTTCTA
1 GT-TTGTAAAATTACCAAAATA-CC-CCTA
*
61734478 G--TGTAAAATTACTAAAATACCCCTA
1 GTTTGTAAAATTACCAAAATACCCCTA
61734503 TAAGGCAAAA
Statistics
Matches: 248, Mismatches: 39, Indels: 20
0.81 0.13 0.07
Matches are distributed among these distances:
25 3 0.01
26 50 0.20
27 172 0.69
28 19 0.08
29 1 0.00
30 3 0.01
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.32
Consensus pattern (27 bp):
GTTTGTAAAATTACCAAAATACCCCTA
Found at i:61740937 original size:27 final size:27
Alignment explanation
Indices: 61740873--61740964 Score: 123
Period size: 27 Copynumber: 3.4 Consensus size: 27
61740863 TAGAGCAAAT
*
61740873 CAGTCATTTTACCTTACAGGGGT-TTA
1 CAGTCATTTTACCATACAGGGGTATTA
* * *
61740899 TAATCATTTTACCCTACAGGGGTATTA
1 CAGTCATTTTACCATACAGGGGTATTA
**
61740926 CAGTCATTTTACCATATGGGGGTATTA
1 CAGTCATTTTACCATACAGGGGTATTA
61740953 CAGTCATTTTAC
1 CAGTCATTTTAC
61740965 TCTATGAGGG
Statistics
Matches: 57, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
26 20 0.35
27 37 0.65
ACGTcount: A:0.26, C:0.18, G:0.17, T:0.38
Consensus pattern (27 bp):
CAGTCATTTTACCATACAGGGGTATTA
Found at i:61740970 original size:27 final size:26
Alignment explanation
Indices: 61740873--61740976 Score: 102
Period size: 27 Copynumber: 3.9 Consensus size: 26
61740863 TAGAGCAAAT
**
61740873 CAGTCATTTTACCTTACAGGGGT-TTA
1 CAGTCATTTTACC-TATGGGGGTATTA
* * **
61740899 TAATCATTTTACCCTACAGGGGTATTA
1 CAGTCATTTTA-CCTATGGGGGTATTA
61740926 CAGTCATTTTACCATATGGGGGTATTA
1 CAGTCATTTTACC-TATGGGGGTATTA
*
61740953 CAGTCATTTTACTCTATGAGGGTA
1 CAGTCATTTTAC-CTATGGGGGTA
61740977 AAATCATACA
Statistics
Matches: 67, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
26 20 0.30
27 46 0.69
28 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.38
Consensus pattern (26 bp):
CAGTCATTTTACCTATGGGGGTATTA
Found at i:61740992 original size:32 final size:31
Alignment explanation
Indices: 61740951--61741014 Score: 110
Period size: 32 Copynumber: 2.0 Consensus size: 31
61740941 ATGGGGGTAT
*
61740951 TACAGTCATTTTACTCTATGAGGGTAAAATCA
1 TACAGTCATTTTACCCTATGA-GGTAAAATCA
61740983 TACAGTCATTTTACCCTATGAGGTAAAATCA
1 TACAGTCATTTTACCCTATGAGGTAAAATCA
61741014 T
1 T
61741015 TATTTTATCA
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
31 11 0.35
32 20 0.65
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.34
Consensus pattern (31 bp):
TACAGTCATTTTACCCTATGAGGTAAAATCA
Found at i:61741011 original size:31 final size:32
Alignment explanation
Indices: 61740924--61741014 Score: 113
Period size: 27 Copynumber: 3.0 Consensus size: 32
61740914 ACAGGGGTAT
* *
61740924 TACAGTCATTTTACCATATGGGGGT---AT--
1 TACAGTCATTTTACCCTATGAGGGTAAAATCA
*
61740951 TACAGTCATTTTACTCTATGAGGGTAAAATCA
1 TACAGTCATTTTACCCTATGAGGGTAAAATCA
61740983 TACAGTCATTTTACCCTATGA-GGTAAAATCA
1 TACAGTCATTTTACCCTATGAGGGTAAAATCA
61741014 T
1 T
61741015 TATTTTATCA
Statistics
Matches: 55, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
27 22 0.40
30 2 0.04
31 11 0.20
32 20 0.36
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.35
Consensus pattern (32 bp):
TACAGTCATTTTACCCTATGAGGGTAAAATCA
Found at i:61744131 original size:20 final size:20
Alignment explanation
Indices: 61744106--61744159 Score: 65
Period size: 20 Copynumber: 2.7 Consensus size: 20
61744096 AGAGGCACAC
61744106 GCCCGTGTGGCCT-GAGACAT
1 GCCCGTGTGGCCTGGA-ACAT
* *
61744126 GCCCGTGTGGCTTGGAACTT
1 GCCCGTGTGGCCTGGAACAT
*
61744146 GACCGTGTGGCCTG
1 GCCCGTGTGGCCTG
61744160 CCCGTGGGTA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 27 0.93
21 2 0.07
ACGTcount: A:0.11, C:0.28, G:0.37, T:0.24
Consensus pattern (20 bp):
GCCCGTGTGGCCTGGAACAT
Found at i:61752157 original size:16 final size:16
Alignment explanation
Indices: 61752136--61752172 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
61752126 GAAATTTCAT
61752136 GAATTCAATCATAAAA
1 GAATTCAATCATAAAA
61752152 GAATTCAATCATAAAA
1 GAATTCAATCATAAAA
61752168 GAATT
1 GAATT
61752173 GTTTGGGACC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.54, C:0.11, G:0.08, T:0.27
Consensus pattern (16 bp):
GAATTCAATCATAAAA
Found at i:61755011 original size:15 final size:16
Alignment explanation
Indices: 61754991--61755020 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
61754981 CGAATAGCAT
61754991 CGTACTTT-CTCACAA
1 CGTACTTTACTCACAA
61755006 CGTACTTTACTCACA
1 CGTACTTTACTCACA
61755021 CTTCATGTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.27, C:0.33, G:0.07, T:0.33
Consensus pattern (16 bp):
CGTACTTTACTCACAA
Found at i:61759727 original size:29 final size:30
Alignment explanation
Indices: 61759685--61759745 Score: 115
Period size: 29 Copynumber: 2.1 Consensus size: 30
61759675 TTTATACCGA
61759685 AATAACATTGACTACATTAAAAAATT-CTG
1 AATAACATTGACTACATTAAAAAATTGCTG
61759714 AATAACATTGACTACATTAAAAAATTGCTG
1 AATAACATTGACTACATTAAAAAATTGCTG
61759744 AA
1 AA
61759746 ATCCAGACTC
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 26 0.84
30 5 0.16
ACGTcount: A:0.49, C:0.13, G:0.08, T:0.30
Consensus pattern (30 bp):
AATAACATTGACTACATTAAAAAATTGCTG
Found at i:61763067 original size:7 final size:7
Alignment explanation
Indices: 61763055--61763183 Score: 84
Period size: 7 Copynumber: 18.1 Consensus size: 7
61763045 ACTAATTAAT
61763055 CTAAACC
1 CTAAACC
61763062 CTAAACC
1 CTAAACC
*
61763069 TCTTAACCC
1 -C-TAAACC
*
61763078 CT-ATCC
1 CTAAACC
*
61763084 CATAAACA
1 C-TAAACC
*
61763092 CTAAACA
1 CTAAACC
61763099 CTAAACC
1 CTAAACC
*
61763106 CTTAACC
1 CTAAACC
*
61763113 CTTAACC
1 CTAAACC
*
61763120 CCAAACC
1 CTAAACC
*
61763127 CTTACACC
1 C-TAAACC
*
61763135 TTAAACTC
1 CTAAAC-C
61763143 C--AACC
1 CTAAACC
61763148 CTAAACC
1 CTAAACC
61763155 CTAAACC
1 CTAAACC
61763162 CTAAACC
1 CTAAACC
* * *
61763169 ATAATCT
1 CTAAACC
61763176 CTAAACC
1 CTAAACC
61763183 C
1 C
61763184 ATAATTCATC
Statistics
Matches: 95, Mismatches: 19, Indels: 16
0.73 0.15 0.12
Matches are distributed among these distances:
5 2 0.02
6 7 0.07
7 71 0.75
8 10 0.11
9 5 0.05
ACGTcount: A:0.39, C:0.41, G:0.00, T:0.20
Consensus pattern (7 bp):
CTAAACC
Found at i:61763179 original size:14 final size:14
Alignment explanation
Indices: 61763146--61763188 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
61763136 TAAACTCCAA
* *
61763146 CCCTAAACCCTAAA
1 CCCTAAACCATAAT
61763160 CCCTAAACCATAAT
1 CCCTAAACCATAAT
*
61763174 CTCTAAACCCATAAT
1 CCCTAAA-CCATAAT
61763189 TCATCTTAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
14 18 0.72
15 7 0.28
ACGTcount: A:0.42, C:0.37, G:0.00, T:0.21
Consensus pattern (14 bp):
CCCTAAACCATAAT
Found at i:61763238 original size:14 final size:14
Alignment explanation
Indices: 61763228--61763272 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
61763218 TCCTAAATCT
*
61763228 TAAACCATAAACCA
1 TAAACCTTAAACCA
* *
61763242 TATATCTTAAACCA
1 TAAACCTTAAACCA
*
61763256 TAAACCTTAAACTA
1 TAAACCTTAAACCA
61763270 TAA
1 TAA
61763273 TGATAATTAA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.51, C:0.22, G:0.00, T:0.27
Consensus pattern (14 bp):
TAAACCTTAAACCA
Found at i:61763603 original size:40 final size:41
Alignment explanation
Indices: 61763448--61763687 Score: 254
Period size: 41 Copynumber: 5.9 Consensus size: 41
61763438 TTTTAGCAAT
*
61763448 GTTTTAGCA-AAAGCGCCGCTAATGCTCTGGTTTTTAGCGGC
1 GTTTTA-CAGAAAGCGCCGCTAATGCTCTAGTTTTTAGCGGC
* *
61763489 GTTTTACAGAAAGCGCCGCTAGTGCTCTAGTTTTTAGCGGA
1 GTTTTACAGAAAGCGCCGCTAATGCTCTAGTTTTTAGCGGC
* **
61763530 GTTTTACCGAAAGCGCCGCTAATGCTCTAGTTTTTAGTAGC
1 GTTTTACAGAAAGCGCCGCTAATGCTCTAGTTTTTAGCGGC
* * * *
61763571 GTTTTACTGAAAGC-ACTCTAATGCTCTGGTTTTTAGCGGC
1 GTTTTACAGAAAGCGCCGCTAATGCTCTAGTTTTTAGCGGC
* * * * * *
61763611 ATTTTGCCGAAAACGCCTCTATTGCTCTA-TTTTTAGCGGC
1 GTTTTACAGAAAGCGCCGCTAATGCTCTAGTTTTTAGCGGC
* * *
61763651 GTTTTAGCAAAAAACGCCGCTATTGCTCT-GTATTTTA
1 GTTTTA-CAGAAAGCGCCGCTAATGCTCTAGT-TTTTA
61763688 CAATTTTTGC
Statistics
Matches: 168, Mismatches: 26, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
40 48 0.29
41 115 0.68
42 5 0.03
ACGTcount: A:0.22, C:0.21, G:0.22, T:0.35
Consensus pattern (41 bp):
GTTTTACAGAAAGCGCCGCTAATGCTCTAGTTTTTAGCGGC
Found at i:61763604 original size:122 final size:122
Alignment explanation
Indices: 61763466--61763687 Score: 313
Period size: 122 Copynumber: 1.8 Consensus size: 122
61763456 AAAAGCGCCG
* *
61763466 CTAATGCTCTGGTTTTTAGCGGCGTTTTACAGAAAGCGCCGCTAGTGCTCTAGTTTTTAGCGGAG
1 CTAATGCTCTGGTTTTTAGCGGCATTTTACAGAAAACGCCGCTAGTGCTCTA-TTTTTAGCGGAG
** *
61763531 TTTTA-CCGAAAGCGCCGCTAATGCTCTAGT-TTTTAGTAGCGTTTTACTGAAAGCACT
65 TTTTAGCAAAAAACGCCGCTAATGCTCT-GTATTTTAGTAGCGTTTTACTGAAAGCACT
* * * * *
61763588 CTAATGCTCTGGTTTTTAGCGGCATTTTGCCGAAAACGCCTCTATTGCTCTATTTTTAGCGGCGT
1 CTAATGCTCTGGTTTTTAGCGGCATTTTACAGAAAACGCCGCTAGTGCTCTATTTTTAGCGGAGT
*
61763653 TTTAGCAAAAAACGCCGCTATTGCTCTGTATTTTA
66 TTTAGCAAAAAACGCCGCTAATGCTCTGTATTTTA
61763688 CAATTTTTGC
Statistics
Matches: 87, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
121 18 0.21
122 69 0.79
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.36
Consensus pattern (122 bp):
CTAATGCTCTGGTTTTTAGCGGCATTTTACAGAAAACGCCGCTAGTGCTCTATTTTTAGCGGAGT
TTTAGCAAAAAACGCCGCTAATGCTCTGTATTTTAGTAGCGTTTTACTGAAAGCACT
Found at i:61765588 original size:31 final size:31
Alignment explanation
Indices: 61765553--61765631 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
61765543 CAGCATATAT
61765553 TGGGCCGAAGCCTTTACATTATTCATATCAC
1 TGGGCCGAAGCCTTTACATTATTCATATCAC
**
61765584 TGGGCCGAAGCCTTTTTATTATTCATATCAC
1 TGGGCCGAAGCCTTTACATTATTCATATCAC
*
61765615 TGGGTCGAAGCCTTTAC
1 TGGGCCGAAGCCTTTAC
61765632 TGTAACAATA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.23, C:0.24, G:0.19, T:0.34
Consensus pattern (31 bp):
TGGGCCGAAGCCTTTACATTATTCATATCAC
Found at i:61765864 original size:25 final size:25
Alignment explanation
Indices: 61765836--61765919 Score: 91
Period size: 25 Copynumber: 3.4 Consensus size: 25
61765826 CTGGAGGCCT
61765836 AGCCTCTTTT-AAT-AACTGGGGCAAA
1 AGCC-CTTTTCAATAAACTGGGGC-AA
**
61765861 AGCCCTTTTCGGTAAACTGGGGCAA
1 AGCCCTTTTCAATAAACTGGGGCAA
** *
61765886 AGCCCTTTTCGGTAAACTGGGGCAT
1 AGCCCTTTTCAATAAACTGGGGCAA
61765911 AGCCCTTTT
1 AGCCCTTTT
61765920 GCACTTCCTC
Statistics
Matches: 54, Mismatches: 3, Indels: 4
0.89 0.05 0.07
Matches are distributed among these distances:
24 5 0.09
25 40 0.74
26 9 0.17
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.29
Consensus pattern (25 bp):
AGCCCTTTTCAATAAACTGGGGCAA
Found at i:61765879 original size:26 final size:25
Alignment explanation
Indices: 61765849--61765919 Score: 124
Period size: 25 Copynumber: 2.8 Consensus size: 25
61765839 CTCTTTTAAT
61765849 AACTGGGGCAAAAGCCCTTTTCGGTA
1 AACTGGGGC-AAAGCCCTTTTCGGTA
61765875 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
61765900 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
61765920 GCACTTCCTC
Statistics
Matches: 44, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
25 35 0.80
26 9 0.20
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGGTA
Found at i:61769072 original size:13 final size:13
Alignment explanation
Indices: 61769056--61769085 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
61769046 AGTGCTGCAA
61769056 AAAAATGCTTATG
1 AAAAATGCTTATG
*
61769069 AAAAATGCTTTTG
1 AAAAATGCTTATG
61769082 AAAA
1 AAAA
61769086 GCTTGGTCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.50, C:0.07, G:0.13, T:0.30
Consensus pattern (13 bp):
AAAAATGCTTATG
Found at i:61770636 original size:59 final size:58
Alignment explanation
Indices: 61770573--61770758 Score: 189
Period size: 59 Copynumber: 3.1 Consensus size: 58
61770563 CAAAATCAAT
61770573 TATTTTAGATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCGTATAAGAA
1 TATTTTAGATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTC-TATAAGAA
* * * * * ** * * *
61770632 TATTTAATACTAAGAATTTTATTA-AATTATATATTTAT-ATTAAATTATATT-TAATAATAA
1 TATTTTAGA-TTA-TATTTTA-TAGTATTATATA-TTATGATTTTAGTAAATTCT-ATAAGAA
61770692 TTATTTTAGATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAA
1 -TATTTTAGATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTC-TATAAGAA
61770752 TATTTTA
1 TATTTTA
61770759 ATATTAAGAA
Statistics
Matches: 97, Mismatches: 20, Indels: 20
0.71 0.15 0.15
Matches are distributed among these distances:
58 6 0.06
59 38 0.39
60 16 0.16
61 31 0.32
62 6 0.06
ACGTcount: A:0.40, C:0.02, G:0.06, T:0.52
Consensus pattern (58 bp):
TATTTTAGATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCTATAAGAA
Found at i:61770684 original size:16 final size:18
Alignment explanation
Indices: 61770647--61770681 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
61770637 AATACTAAGA
61770647 ATTT-TATTAAATTATAT
1 ATTTATATTAAATTATAT
61770664 ATTTATATTAAATTATAT
1 ATTTATATTAAATTATAT
61770682 TTAATAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
ATTTATATTAAATTATAT
Found at i:61770693 original size:16 final size:17
Alignment explanation
Indices: 61770654--61770699 Score: 51
Period size: 18 Copynumber: 2.8 Consensus size: 17
61770644 AGAATTTTAT
* *
61770654 TAAATTATATATTTATAT
1 TAAATTATAT-TTAATAA
61770672 TAAATTATATTTAATAA
1 TAAATTATATTTAATAA
61770689 T-AATTAT-TTTA
1 TAAATTATATTTA
61770700 GATTATATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
15 4 0.15
16 6 0.23
17 6 0.23
18 10 0.38
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
TAAATTATATTTAATAA
Found at i:61770695 original size:26 final size:25
Alignment explanation
Indices: 61770666--61770722 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 25
61770656 AATTATATAT
61770666 TTATATTAAATTATATTTAATAATAA
1 TTATATTAAATTATATTTAATAAT-A
* * * *
61770692 TTATTTTAGATTATATTTTATAGTA
1 TTATATTAAATTATATTTAATAATA
61770717 TTATAT
1 TTATAT
61770723 ATTATGATTT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
25 6 0.23
26 20 0.77
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (25 bp):
TTATATTAAATTATATTTAATAATA
Found at i:61770727 original size:120 final size:121
Alignment explanation
Indices: 61770570--61770816 Score: 442
Period size: 120 Copynumber: 2.0 Consensus size: 121
61770560 CCACAAAATC
*
61770570 AATTATTTTAGATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCGTATAAGAATA-
1 AATTATTTTAGATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATAT
61770634 TTTAATACTAAGAATTTTATTAAATTATATATTTATATTAAATTATATTTAATAAT
66 TTTAATACTAAGAATTTTATTAAATTATATATTTATATTAAATTATATTTAATAAT
61770690 AATTATTTTAGATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATAT
1 AATTATTTTAGATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATAT
* * *
61770755 TTTAATATTAAGAATTTTATTAAATTATATTTTTTTATTAAATTATATTTAATAAT
66 TTTAATACTAAGAATTTTATTAAATTATATATTTATATTAAATTATATTTAATAAT
*
61770811 TATTAT
1 AATTAT
61770817 GTTAAAATAT
Statistics
Matches: 121, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
120 63 0.52
121 58 0.48
ACGTcount: A:0.41, C:0.01, G:0.05, T:0.53
Consensus pattern (121 bp):
AATTATTTTAGATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATAT
TTTAATACTAAGAATTTTATTAAATTATATATTTATATTAAATTATATTTAATAAT
Found at i:61770790 original size:18 final size:18
Alignment explanation
Indices: 61770769--61770804 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
61770759 ATATTAAGAA
61770769 TTTTATTAAATTATATTT
1 TTTTATTAAATTATATTT
61770787 TTTTATTAAATTATATTT
1 TTTTATTAAATTATATTT
61770805 AATAATTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (18 bp):
TTTTATTAAATTATATTT
Found at i:61770812 original size:18 final size:18
Alignment explanation
Indices: 61770773--61770812 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
61770763 TAAGAATTTT
** *
61770773 ATTAAATTATATTTTTTT
1 ATTAAATTATATTTAATA
61770791 ATTAAATTATATTTAATA
1 ATTAAATTATATTTAATA
61770809 ATTA
1 ATTA
61770813 TTATGTTAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
ATTAAATTATATTTAATA
Found at i:61771052 original size:45 final size:44
Alignment explanation
Indices: 61770962--61771056 Score: 127
Period size: 45 Copynumber: 2.1 Consensus size: 44
61770952 TTACACCTCT
* *
61770962 ATTACATTCAACCAAACACAGGATTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACACAGGATTACTATTACACCTCTAATCC
*** *
61771006 ATTACATTCAACCAAACAGTTGATTTGCTATTACACCTCTAATCC
1 ATTACATTCAACCAAACACAGGA-TTACTATTACACCTCTAATCC
61771051 ATTACA
1 ATTACA
61771057 CCTCTAATCC
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
44 20 0.45
45 24 0.55
ACGTcount: A:0.35, C:0.27, G:0.06, T:0.32
Consensus pattern (44 bp):
ATTACATTCAACCAAACACAGGATTACTATTACACCTCTAATCC
Done.