Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 182 of 295
Found at i:62491762 original size:24 final size:24
Alignment explanation
Indices: 62491735--62491937 Score: 289
Period size: 24 Copynumber: 8.4 Consensus size: 24
62491725 GGAGGAAGTG
62491735 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
62491759 CAAAAGGGCTTATGCCCCAGCTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
62491783 CAAAAGGGCTTATGCCCTAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
62491807 TAAAAGGGCTTATGCCCCAGCTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
62491831 CAAAAAGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* * *
62491855 TAAAAGGGCTTACGCCCCGGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
62491879 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* * *
62491903 GAAAAGGGCTTTTGCCCCCGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
62491927 TAAAAGAGGCT
1 CAAAAG-GGCT
62491938 AGGCCTCTAG
Statistics
Matches: 158, Mismatches: 20, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
24 154 0.97
25 4 0.03
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.25
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:62499459 original size:8 final size:8
Alignment explanation
Indices: 62499448--62499475 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
62499438 TTAAAGCGAT
62499448 AAATGCCG
1 AAATGCCG
62499456 AAATGCCG
1 AAATGCCG
62499464 AAATGCCG
1 AAATGCCG
62499472 AAAT
1 AAAT
62499476 CTTGGCATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.43, C:0.21, G:0.21, T:0.14
Consensus pattern (8 bp):
AAATGCCG
Found at i:62500012 original size:20 final size:20
Alignment explanation
Indices: 62499989--62500027 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
62499979 TAAACATGGT
62499989 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
62500009 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
62500028 TGTATTCATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:62500109 original size:24 final size:24
Alignment explanation
Indices: 62500077--62500279 Score: 307
Period size: 24 Copynumber: 8.4 Consensus size: 24
62500067 GGAGGAAGTG
* *
62500077 CAAAAGGGCTTATTCCCCAATTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
62500101 CAAAAGGGCTTATGCCCCAGCTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
62500125 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
62500149 TAAAAGGGCTTATGCCCCAGCTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
62500173 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
62500197 TAAAAGGGCTTACGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
62500221 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
62500245 TAAAAGGGCTTTTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
62500269 TAAAAGAGGCT
1 CAAAAG-GGCT
62500280 AGGCCTCTAG
Statistics
Matches: 164, Mismatches: 14, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
24 160 0.98
25 4 0.02
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:62503383 original size:42 final size:44
Alignment explanation
Indices: 62503278--62503383 Score: 119
Period size: 44 Copynumber: 2.5 Consensus size: 44
62503268 GTGTTTTCAA
* * *
62503278 GTAAGACCACGTCTGGGACATTGGCATCGACTTATGATTTACGT
1 GTAAAACCATGTCTGGGACATCGGCATCGACTTATGATTTACGT
** *
62503322 GTAGGACCATGTCTAGGACATCGGCATCGTA-TT-TGATTT-CGT
1 GTAAAACCATGTCTGGGACATCGGCATCG-ACTTATGATTTACGT
*
62503364 GTAAAACCCTGTCTGGGACA
1 GTAAAACCATGTCTGGGACA
62503384 GTGCATCGAT
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
42 19 0.36
43 6 0.11
44 27 0.51
45 1 0.02
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (44 bp):
GTAAAACCATGTCTGGGACATCGGCATCGACTTATGATTTACGT
Found at i:62503397 original size:42 final size:43
Alignment explanation
Indices: 62503278--62503424 Score: 124
Period size: 42 Copynumber: 3.4 Consensus size: 43
62503268 GTGTTTTCAA
* * *
62503278 GTAAGACCACGTCTGGGACATTGGCATCGACT-TATGATTTACGT
1 GTAAAACCATGTCTGGGACA-TGGCATCGA-TATTTGATTTACGT
** *
62503322 GTAGGACCATGTCTAGGACATCGGCATCG-TATTTGATTT-CGT
1 GTAAAACCATGTCTGGGACAT-GGCATCGATATTTGATTTACGT
* *
62503364 GTAAAACCCTGTCTGGGACA-GTGCATCGATATTTG-TTTACAT
1 GTAAAACCATGTCTGGGACATG-GCATCGATATTTGATTTACGT
* * *
62503406 GTAAGACCACGTCTAGGAC
1 GTAAAACCATGTCTGGGAC
62503425 GTTGGTATTG
Statistics
Matches: 85, Mismatches: 13, Indels: 12
0.77 0.12 0.11
Matches are distributed among these distances:
40 1 0.01
41 9 0.11
42 43 0.51
43 8 0.09
44 24 0.28
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.30
Consensus pattern (43 bp):
GTAAAACCATGTCTGGGACATGGCATCGATATTTGATTTACGT
Found at i:62509135 original size:48 final size:48
Alignment explanation
Indices: 62509079--62509230 Score: 138
Period size: 48 Copynumber: 3.2 Consensus size: 48
62509069 TGTGAGAGGC
*
62509079 AGTGTAAGACCATTCCTGGGACATGGCATCACCATTGAGACGAGGGCT
1 AGTGTAAGACCATTCCTGGGACATGGCATCACCATTGAGACGAGAGCT
* * *
62509127 AGTGTAAGA-CGTGCCTGGGACAT-GCATCAGTCACATT---ACGATAGCT
1 AGTGTAAGACCATTCCTGGGACATGGCATCA--C-CATTGAGACGAGAGCT
* ** *
62509173 AGTGTAAGACCATGT-CTGGGACATGGCATCGA-CATAGAGATAAGTGCT
1 AGTGTAAGACCAT-TCCTGGGACATGGCATC-ACCATTGAGACGAGAGCT
62509221 AGTGTAAGAC
1 AGTGTAAGAC
62509231 GTGTCTGGGA
Statistics
Matches: 83, Mismatches: 11, Indels: 20
0.73 0.10 0.18
Matches are distributed among these distances:
45 3 0.04
46 22 0.27
47 23 0.28
48 30 0.36
49 5 0.06
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (48 bp):
AGTGTAAGACCATTCCTGGGACATGGCATCACCATTGAGACGAGAGCT
Found at i:62509149 original size:47 final size:47
Alignment explanation
Indices: 62509079--62509438 Score: 147
Period size: 47 Copynumber: 7.6 Consensus size: 47
62509069 TGTGAGAGGC
* *
62509079 AGTGTAAGACCATTCCTGGGACATGGCATCACCATTGAGACGAGGGCT
1 AGTGTAAGACCATGCCTGGGACAT-GCATCACCATTGAGACGAGAGCT
* *
62509127 AGTGTAAGA-CGTGCCTGGGACATGCATCAGTCACATT---ACGATAGCT
1 AGTGTAAGACCATGCCTGGGACATGCATCA--C-CATTGAGACGAGAGCT
* * ** *
62509173 AGTGTAAGACCATGTCTGGGACATGGCATCGA-CATAGAGATAAGTGCT
1 AGTGTAAGACCATGCCTGGGACAT-GCATC-ACCATTGAGACGAGAGCT
* * * ** * *
62509221 AGTGTAAGA-CGTGTCTGGGACATGCATCGGCC-TCAATGATG-GTAGCC
1 AGTGTAAGACCATGCCTGGGACATGCATC-ACCATTGA-GACGAG-AGCT
** * * ** *
62509268 AGTGTAAGA-TGTGTCTGGGACATGCATCGA-C--TAAG-CTTCGTGCT
1 AGTGTAAGACCATGCCTGGGACATGCATC-ACCATTGAGAC-GAGAGCT
** * *
62509312 AGTGTAAGA-CATGCCTGGGACATGCATCAGTACTTATACACGAGAGCT
1 AGTGTAAGACCATGCCTGGGACATGCATCACCA-TT-GAGACGAGAGCT
* * * * * * *
62509360 AATGTAAGACCATGTCTGAGACATGGCATCGGCC-TCGATGAAGATAGCT
1 AGTGTAAGACCATGCCTGGGACAT-GCATC-ACCATTGA-GACGAGAGCT
*
62509409 AGTGTAAGACCATGTCTGGGACATGGCATC
1 AGTGTAAGACCATGCCTGGGACAT-GCATC
62509439 GACAACTTAA
Statistics
Matches: 241, Mismatches: 47, Indels: 47
0.72 0.14 0.14
Matches are distributed among these distances:
43 1 0.00
44 28 0.12
45 6 0.02
46 32 0.13
47 72 0.30
48 43 0.18
49 54 0.22
50 5 0.02
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACCATGCCTGGGACATGCATCACCATTGAGACGAGAGCT
Found at i:62509195 original size:94 final size:94
Alignment explanation
Indices: 62509079--62509390 Score: 309
Period size: 94 Copynumber: 3.3 Consensus size: 94
62509069 TGTGAGAGGC
* *
62509079 AGTGTAAGACCAT-TCCTGGGACATGGCATC-ACCATTGAGACGAGGGCTAGTGTAAGACGTGCC
1 AGTGTAAGACCATGT-CTGGGACATGGCATCGA-CATTGAGACAAGTGCTAGTGTAAGACGTGCC
*
62509142 TGGGACATGCATCAGTCACATTACGATAGCT
64 TGGGACATGCATCAGTCACATCACGATAGCT
* * *
62509173 AGTGTAAGACCATGTCTGGGACATGGCATCGACATAGAGATAAGTGCTAGTGTAAGACGTGTCTG
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGACAAGTGCTAGTGTAAGACGTGCCTG
* * * * *
62509238 GGACATGCATCGGCCTCA-ATGATGGTAGCC
66 GGACATGCATCAG--TCACATCACGATAGCT
** * ** *
62509268 AGTGTAAGA-TGTGTCTGGGACAT-GCATCGAC--TAAG-CTTCGTGCTAGTGTAAGACATGCCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGAC-AAGTGCTAGTGTAAGACGTGCCT
*
62509328 GGGACATGCATCAGT-ACTTATACACGAGAGCT
65 GGGACATGCATCAGTCAC--AT-CACGATAGCT
* *
62509360 AATGTAAGACCATGTCTGAGACATGGCATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
62509391 GCCTCGATGA
Statistics
Matches: 178, Mismatches: 29, Indels: 22
0.78 0.13 0.10
Matches are distributed among these distances:
88 1 0.01
89 1 0.01
91 36 0.20
92 13 0.07
93 19 0.11
94 86 0.48
95 19 0.11
96 3 0.02
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (94 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGACAAGTGCTAGTGTAAGACGTGCCTG
GGACATGCATCAGTCACATCACGATAGCT
Found at i:62509389 original size:141 final size:142
Alignment explanation
Indices: 62509127--62509441 Score: 347
Period size: 141 Copynumber: 2.2 Consensus size: 142
62509117 GACGAGGGCT
* * * *
62509127 AGTGTAAGACGTGCCTGGGACATGCATC-AGTCACATTACGATAGCTAGTGTAAGACCATGTCTG
1 AGTGTAAGACGTGTCTGGGACATGCATCGACTAACATTACGATAGCTAGTGTAAGACCATGCCTG
* * * * * *
62509191 GGACATGGCATCGACATAGAGATAAGTGCTAGTGTAAGACGTGTCTGGGACATGCATCGGCCTCA
66 GGACATGGCATCGACATAGACACAAGAGCTAATGTAAGACATGTCTGAGACATGCATCGGCCTCA
* *
62509256 ATGATGGTAGCC
131 ATGAAGATAGCC
*
62509268 AGTGTAAGATGTGTCTGGGACATGCATCGACTAAGC-TT-CG-T-GCTAGTGTAAGA-CATGCCT
1 AGTGTAAGACGTGTCTGGGACATGCATCGACTAA-CATTACGATAGCTAGTGTAAGACCATGCCT
* * *
62509328 GGGACAT-GCATCAGTACTTATACACGAGAGCTAATGTAAGACCATGTCTGAGACATGGCATCGG
65 GGGACATGGCATC-G-ACATAGACACAAGAGCTAATGTAAGA-CATGTCTGAGACAT-GCATCGG
* *
62509392 CCTCGATGAAGATAGCT
126 CCTCAATGAAGATAGCC
*
62509409 AGTGTAAGACCATGTCTGGGACATGGCATCGAC
1 AGTGTAAGA-CGTGTCTGGGACAT-GCATCGAC
62509442 AACTTAACCC
Statistics
Matches: 146, Mismatches: 20, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
137 5 0.03
138 14 0.10
139 31 0.21
140 13 0.09
141 57 0.39
142 17 0.12
143 9 0.06
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (142 bp):
AGTGTAAGACGTGTCTGGGACATGCATCGACTAACATTACGATAGCTAGTGTAAGACCATGCCTG
GGACATGGCATCGACATAGACACAAGAGCTAATGTAAGACATGTCTGAGACATGCATCGGCCTCA
ATGAAGATAGCC
Found at i:62521778 original size:42 final size:43
Alignment explanation
Indices: 62521700--62521813 Score: 128
Period size: 42 Copynumber: 2.7 Consensus size: 43
62521690 CATCGACTTA
62521700 TGATTTACGTGTAAGACCATGTCTGGGACATCGGCATCGTATT
1 TGATTTACGTGTAAGACCATGTCTGGGACATCGGCATCGTATT
* *
62521743 TGATTT-CGTGTAAGATCC-TGTCTGGGATAGT-GGCATCGAAATT
1 TGATTTACGTGTAAGA-CCATGTCTGGGACA-TCGGCATCG-TATT
* * *
62521786 T-ATTTACATGTAAGACTACGTCTGGGAC
1 TGATTTACGTGTAAGACCATGTCTGGGAC
62521814 GTTGGCATTG
Statistics
Matches: 60, Mismatches: 6, Indels: 10
0.79 0.08 0.13
Matches are distributed among these distances:
42 31 0.52
43 29 0.48
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (43 bp):
TGATTTACGTGTAAGACCATGTCTGGGACATCGGCATCGTATT
Found at i:62521820 original size:43 final size:43
Alignment explanation
Indices: 62521665--62521821 Score: 124
Period size: 43 Copynumber: 3.7 Consensus size: 43
62521655 TGTGTTTTCA
* * * * * *
62521665 TGTAAGACCACATTTGGGATGTTTGCATCGACTTATGATTTACG
1 TGTAAGACTACGTCTGGGACGTTGGCATCGAATT-TGATTTACG
* * * * *
62521709 TGTAAGACCATGTCTGGGACATCGGCATCGTATTTGATTT-CG
1 TGTAAGACTACGTCTGGGACGTTGGCATCGAATTTGATTTACG
* * *
62521751 TGTAAGA-TCCTGTCTGGGATAG-TGGCATCGAAATTT-ATTTACA
1 TGTAAGACTAC-GTCTGGGA-CGTTGGCATCG-AATTTGATTTACG
62521794 TGTAAGACTACGTCTGGGACGTTGGCAT
1 TGTAAGACTACGTCTGGGACGTTGGCAT
62521822 TGTATGAGCT
Statistics
Matches: 88, Mismatches: 19, Indels: 13
0.73 0.16 0.11
Matches are distributed among these distances:
42 29 0.33
43 32 0.36
44 27 0.31
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.34
Consensus pattern (43 bp):
TGTAAGACTACGTCTGGGACGTTGGCATCGAATTTGATTTACG
Found at i:62522743 original size:74 final size:74
Alignment explanation
Indices: 62522648--62522786 Score: 224
Period size: 74 Copynumber: 1.9 Consensus size: 74
62522638 ATGGGCAGAT
* * * * *
62522648 ACACGGGCGTGTGTCTCAGTCGTGTTTCTCGAGGGCCATTTCGAAATGAGCCTGAGGATACCACA
1 ACACGGGCATGTGTCTCAGTCGTGTTGCTCGAAGGCCATTTCAAAATGAGCCTGAGCATACCACA
62522713 CGGTCGCAC
66 CGGTCGCAC
*
62522722 ACACGGGCATGTGTCTTAGTCGTGTTGCTCGAAGGCCATTTCAAAATGAGCCTGAGCATACCACA
1 ACACGGGCATGTGTCTCAGTCGTGTTGCTCGAAGGCCATTTCAAAATGAGCCTGAGCATACCACA
62522787 TGGCCACACG
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
74 59 1.00
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.24
Consensus pattern (74 bp):
ACACGGGCATGTGTCTCAGTCGTGTTGCTCGAAGGCCATTTCAAAATGAGCCTGAGCATACCACA
CGGTCGCAC
Found at i:62522803 original size:74 final size:74
Alignment explanation
Indices: 62522648--62522808 Score: 223
Period size: 74 Copynumber: 2.2 Consensus size: 74
62522638 ATGGGCAGAT
* * * * *
62522648 ACACGGGCGTGTGTCTCAGTCGTGTTTCTCGAGGGCCATTTCGAAATGAGCCTGAGGATACCACA
1 ACACGGGCATGTGTCTCAGTCGTGTTGCTCGAAGGCCATTTCAAAATGAGCCTGAGCATACCACA
* *
62522713 CGGTCGCAC
66 CGGCCACAC
*
62522722 ACACGGGCATGTGTCTTAGTCGTGTTGCTCGAAGGCCATTTCAAAATGAGCCTGAGCATACCACA
1 ACACGGGCATGTGTCTCAGTCGTGTTGCTCGAAGGCCATTTCAAAATGAGCCTGAGCATACCACA
*
62522787 TGGCCACAC
66 CGGCCACAC
* *
62522796 GCTCGGGCATGTG
1 ACACGGGCATGTG
62522809 CTAGGCCGTG
Statistics
Matches: 76, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
74 76 1.00
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.23
Consensus pattern (74 bp):
ACACGGGCATGTGTCTCAGTCGTGTTGCTCGAAGGCCATTTCAAAATGAGCCTGAGCATACCACA
CGGCCACAC
Found at i:62529201 original size:26 final size:26
Alignment explanation
Indices: 62529162--62529256 Score: 93
Period size: 26 Copynumber: 3.7 Consensus size: 26
62529152 CCAACACACC
* * *
62529162 AATATCACAGCAAATCTACCAGTAAT
1 AATATCGCAACAAAGCTACCAGTAAT
*
62529188 AATATCGCAACAAAGCTTCCAGT-AT
1 AATATCGCAACAAAGCTACCAGTAAT
* * * *
62529213 CAGTAACGCAACAAAGCTGCCAGTAAC
1 -AATATCGCAACAAAGCTACCAGTAAT
*
62529240 AGTATCGCAACAAAGCT
1 AATATCGCAACAAAGCT
62529257 GCCATATCAG
Statistics
Matches: 58, Mismatches: 9, Indels: 4
0.82 0.13 0.06
Matches are distributed among these distances:
25 2 0.03
26 55 0.95
27 1 0.02
ACGTcount: A:0.42, C:0.25, G:0.14, T:0.19
Consensus pattern (26 bp):
AATATCGCAACAAAGCTACCAGTAAT
Found at i:62529257 original size:26 final size:26
Alignment explanation
Indices: 62529180--62529269 Score: 119
Period size: 26 Copynumber: 3.5 Consensus size: 26
62529170 AGCAAATCTA
* * *
62529180 CCAGTAATAATATCGCAACAAAGCTT
1 CCAGTAACAGTATCGCAACAAAGCTG
* *
62529206 CCAGTATCAGTAACGCAACAAAGCTG
1 CCAGTAACAGTATCGCAACAAAGCTG
62529232 CCAGTAACAGTATCGCAACAAAGCTG
1 CCAGTAACAGTATCGCAACAAAGCTG
*
62529258 CCA-TATCAGTAT
1 CCAGTAACAGTAT
62529270 ATGTGGCCAA
Statistics
Matches: 56, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
25 8 0.14
26 48 0.86
ACGTcount: A:0.39, C:0.26, G:0.16, T:0.20
Consensus pattern (26 bp):
CCAGTAACAGTATCGCAACAAAGCTG
Found at i:62532689 original size:41 final size:41
Alignment explanation
Indices: 62532632--62532714 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
62532622 ATATGGACTT
62532632 TAGTGTTTTTAGACTCCTTGTCCCTTAATGATGCATAAAAC
1 TAGTGTTTTTAGACTCCTTGTCCCTTAATGATGCATAAAAC
62532673 TAGTGTTTTTAGACTCCTTGTCCCTTAATGATGCATAAAAC
1 TAGTGTTTTTAGACTCCTTGTCCCTTAATGATGCATAAAAC
62532714 T
1 T
62532715 CTTGAACAAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.27, C:0.19, G:0.14, T:0.40
Consensus pattern (41 bp):
TAGTGTTTTTAGACTCCTTGTCCCTTAATGATGCATAAAAC
Found at i:62536543 original size:23 final size:23
Alignment explanation
Indices: 62536516--62536585 Score: 64
Period size: 23 Copynumber: 3.3 Consensus size: 23
62536506 ATAAAATAAC
62536516 ATAAAAGAAATAAAGTTCTAGAG
1 ATAAAAGAAATAAAGTTCTAGAG
* *
62536539 ATAAAAG-AGT--AG----AGTG
1 ATAAAAGAAATAAAGTTCTAGAG
62536555 ATAAAAGAAATAAAGTTCTAGAG
1 ATAAAAGAAATAAAGTTCTAGAG
*
62536578 ATAGAAGA
1 ATAAAAGA
62536586 GTAGAGTAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 14
0.65 0.09 0.26
Matches are distributed among these distances:
16 10 0.29
17 2 0.06
19 2 0.06
20 2 0.06
22 2 0.06
23 17 0.49
ACGTcount: A:0.56, C:0.03, G:0.21, T:0.20
Consensus pattern (23 bp):
ATAAAAGAAATAAAGTTCTAGAG
Found at i:62536561 original size:39 final size:39
Alignment explanation
Indices: 62536516--62536592 Score: 145
Period size: 39 Copynumber: 2.0 Consensus size: 39
62536506 ATAAAATAAC
62536516 ATAAAAGAAATAAAGTTCTAGAGATAAAAGAGTAGAGTG
1 ATAAAAGAAATAAAGTTCTAGAGATAAAAGAGTAGAGTG
*
62536555 ATAAAAGAAATAAAGTTCTAGAGATAGAAGAGTAGAGT
1 ATAAAAGAAATAAAGTTCTAGAGATAAAAGAGTAGAGT
62536593 AAATCAAATC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.53, C:0.03, G:0.23, T:0.21
Consensus pattern (39 bp):
ATAAAAGAAATAAAGTTCTAGAGATAAAAGAGTAGAGTG
Found at i:62540899 original size:30 final size:31
Alignment explanation
Indices: 62540875--62540933 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 31
62540865 GTAAATACTC
*
62540875 AAAATTTG-AGGGATTAA-AGTGTAAATATGA
1 AAAATTTGAAGGG-CTAATAGTGTAAATATGA
62540905 AAAATTTGAAGGGCTAATAGTGTAAATAT
1 AAAATTTGAAGGGCTAATAGTGTAAATAT
62540934 TTTAAAGGTG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 11 0.42
31 15 0.58
ACGTcount: A:0.46, C:0.02, G:0.22, T:0.31
Consensus pattern (31 bp):
AAAATTTGAAGGGCTAATAGTGTAAATATGA
Found at i:62541180 original size:25 final size:25
Alignment explanation
Indices: 62541152--62541204 Score: 65
Period size: 25 Copynumber: 2.1 Consensus size: 25
62541142 GATTAATTAA
62541152 TTAA-TTAATTATTGTTAT-TAATATT
1 TTAATTTAATT-TT-TTATATAATATT
*
62541177 TTAATTTGATTTTTTATATAATATT
1 TTAATTTAATTTTTTATATAATATT
62541202 TTA
1 TTA
62541205 TTATTTTATT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
24 4 0.16
25 16 0.64
26 5 0.20
ACGTcount: A:0.34, C:0.00, G:0.04, T:0.62
Consensus pattern (25 bp):
TTAATTTAATTTTTTATATAATATT
Found at i:62541203 original size:12 final size:11
Alignment explanation
Indices: 62541155--62541226 Score: 51
Period size: 12 Copynumber: 6.4 Consensus size: 11
62541145 TAATTAATTA
62541155 ATTAATTATTGTT
1 ATTAA-TATT-TT
62541168 ATTAATATTTT
1 ATTAATATTTT
* *
62541179 AATTTGATTTTTT
1 -A-TTAATATTTT
62541192 ATATAATATTTT
1 AT-TAATATTTT
62541204 A-T--TATTTT
1 ATTAATATTTT
*
62541212 ATTATTATTTT
1 ATTAATATTTT
62541223 ATTA
1 ATTA
62541227 GTATATATAA
Statistics
Matches: 49, Mismatches: 4, Indels: 14
0.73 0.06 0.21
Matches are distributed among these distances:
8 7 0.14
9 1 0.02
10 1 0.02
11 13 0.27
12 14 0.29
13 13 0.27
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (11 bp):
ATTAATATTTT
Found at i:62541218 original size:11 final size:11
Alignment explanation
Indices: 62541159--62541226 Score: 52
Period size: 11 Copynumber: 6.1 Consensus size: 11
62541149 TAATTAATTA
62541159 ATTATTGTTATT
1 ATTATT-TTATT
*
62541171 AATATTTTAATTT
1 ATTATTTT-A-TT
62541184 GATT-TTTTA-T
1 -ATTATTTTATT
* *
62541194 ATAATATT-TT
1 ATTATTTTATT
62541204 ATTATTTTATT
1 ATTATTTTATT
62541215 ATTATTTTATT
1 ATTATTTTATT
62541226 A
1 A
62541227 GTATATATAA
Statistics
Matches: 44, Mismatches: 6, Indels: 13
0.70 0.10 0.21
Matches are distributed among these distances:
9 2 0.05
10 11 0.25
11 16 0.36
12 7 0.16
13 6 0.14
14 2 0.05
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (11 bp):
ATTATTTTATT
Found at i:62541220 original size:19 final size:20
Alignment explanation
Indices: 62541188--62541236 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 20
62541178 TAATTTGATT
62541188 TTTTATATAATATTTTATTA
1 TTTTATATAATATTTTATTA
*
62541208 TTTTAT-TATTATTTTATTA
1 TTTTATATAATATTTTATTA
* *
62541227 GTATATATAA
1 TTTTATATAA
62541237 AGAAAGAAAG
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
19 16 0.67
20 8 0.33
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (20 bp):
TTTTATATAATATTTTATTA
Found at i:62542468 original size:12 final size:12
Alignment explanation
Indices: 62542453--62542478 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
62542443 GCAATTTTGT
62542453 AAGGATATCAAA
1 AAGGATATCAAA
62542465 AAGGATATCAAA
1 AAGGATATCAAA
62542477 AA
1 AA
62542479 TGACCAATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.62, C:0.08, G:0.15, T:0.15
Consensus pattern (12 bp):
AAGGATATCAAA
Found at i:62542624 original size:37 final size:37
Alignment explanation
Indices: 62542583--62542655 Score: 146
Period size: 37 Copynumber: 2.0 Consensus size: 37
62542573 AAAAGAAAAT
62542583 TTATCAAAATGCCCCTAAATCTGGGTATTTTTGCAAA
1 TTATCAAAATGCCCCTAAATCTGGGTATTTTTGCAAA
62542620 TTATCAAAATGCCCCTAAATCTGGGTATTTTTGCAA
1 TTATCAAAATGCCCCTAAATCTGGGTATTTTTGCAA
62542656 TTTTGTCAGG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (37 bp):
TTATCAAAATGCCCCTAAATCTGGGTATTTTTGCAAA
Found at i:62560264 original size:20 final size:20
Alignment explanation
Indices: 62560236--62560278 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
62560226 TATCTGCATC
*
62560236 ACTGGTGGCTTGTCCACAAT
1 ACTGATGGCTTGTCCACAAT
* *
62560256 ACTGATGGCTTTTCCTCAAT
1 ACTGATGGCTTGTCCACAAT
62560276 ACT
1 ACT
62560279 CGTAGTTTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.35
Consensus pattern (20 bp):
ACTGATGGCTTGTCCACAAT
Found at i:62560336 original size:60 final size:60
Alignment explanation
Indices: 62560203--62560375 Score: 149
Period size: 60 Copynumber: 2.9 Consensus size: 60
62560193 GGGACGATTA
* * *
62560203 GCTTGTCTACAATACTAGCAATTTATCTGCATCACTGGTGGCTTGTCCACAATACTGATG
1 GCTTGTCTACAATACTAGCAATTTATCTGAATCACTGATAGCTTGTCCACAATACTGATG
* * * * * *
62560263 GCTTTTCCT-CAATACTCGTAGTTTATTTGAATTACTGATAGCTTGTCCACAATACT-A-G
1 GCTTGT-CTACAATACTAGCAATTTATCTGAATCACTGATAGCTTGTCCACAATACTGATG
* * * *
62560321 GAACTTGTCTACAATACT-GACAGTTTATCTGTAAT-ACTGGTCGTTTGTCCACAAT
1 G--CTTGTCTACAATACTAG-CAATTTATCTG-AATCACTGATAGCTTGTCCACAAT
62560376 CTGGTTTGTT
Statistics
Matches: 92, Mismatches: 15, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
58 2 0.02
59 4 0.04
60 81 0.88
61 5 0.05
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.36
Consensus pattern (60 bp):
GCTTGTCTACAATACTAGCAATTTATCTGAATCACTGATAGCTTGTCCACAATACTGATG
Found at i:62562055 original size:68 final size:68
Alignment explanation
Indices: 62561941--62562204 Score: 298
Period size: 68 Copynumber: 3.9 Consensus size: 68
62561931 ATCCTTGTGA
* * * *
62561941 ACTTTATATGTTGTCATAG-TCCAACTATAGTCTTACACAATATGTTCCCATGTTTACTGTCATG
1 ACTTCATATGTTGCCATAGCT-CAACTATGGTCTTACACAATATGTTCCCATGTTTACTGTCCTG
62562005 GTAG
65 GTAG
* * *
62562009 ACTTCATATGTTGCCATAGCTCAGCTATGGTCTAACACAATATGTTCCCATGTTTACTGTCCTGA
1 ACTTCATATGTTGCCATAGCTCAACTATGGTCTTACACAATATGTTCCCATGTTTACTGTCCTGG
*
62562074 TGG
66 TAG
* * * * * * * *
62562077 AATTCATATGTTGCTATAGC-CTAGCTATGGTCTTACATAATTTGTTCACGTGTTTACTATCCTG
1 ACTTCATATGTTGCCATAGCTC-AACTATGGTCTTACACAATATGTTCCCATGTTTACTGTCCTG
62562141 GTAG
65 GTAG
* * * * **
62562145 ACTTCATATGTTACCACAGCCCAACTATGGTCCTACACAATATGTTCTTATGTTTACTGT
1 ACTTCATATGTTGCCATAGCTCAACTATGGTCTTACACAATATGTTCCCATGTTTACTGT
62562205 TTTAGCATAT
Statistics
Matches: 163, Mismatches: 30, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
67 1 0.01
68 160 0.98
69 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.16, T:0.38
Consensus pattern (68 bp):
ACTTCATATGTTGCCATAGCTCAACTATGGTCTTACACAATATGTTCCCATGTTTACTGTCCTGG
TAG
Found at i:62597104 original size:33 final size:34
Alignment explanation
Indices: 62597067--62597137 Score: 103
Period size: 32 Copynumber: 2.1 Consensus size: 34
62597057 ATCTAGGGAT
*
62597067 AAAATTGACCCACCCATCCC-AACACACCAT-GTC
1 AAAATTGACCCACCCA-CCCAAACACACCATCGAC
62597100 AAAA-TGACCCACCCACCCAAACACACCATCGAC
1 AAAATTGACCCACCCACCCAAACACACCATCGAC
62597133 AAAAT
1 AAAAT
62597138 AAAAATAATA
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
31 3 0.09
32 21 0.62
33 10 0.29
ACGTcount: A:0.42, C:0.41, G:0.06, T:0.11
Consensus pattern (34 bp):
AAAATTGACCCACCCACCCAAACACACCATCGAC
Found at i:62597462 original size:31 final size:31
Alignment explanation
Indices: 62597421--62597492 Score: 90
Period size: 31 Copynumber: 2.3 Consensus size: 31
62597411 TCCAGAAAAT
* *
62597421 TGGGCTCACACGCCCATATAGCCTGCCCATG
1 TGGGCCCACACGCCCATATAGCCTACCCATG
** * *
62597452 TGGGCCCACACGTTCATGTAGCCTACCCGTG
1 TGGGCCCACACGCCCATATAGCCTACCCATG
62597483 TGGGCCCACA
1 TGGGCCCACA
62597493 TGACTTGGCC
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.18, C:0.38, G:0.25, T:0.19
Consensus pattern (31 bp):
TGGGCCCACACGCCCATATAGCCTACCCATG
Found at i:62599795 original size:13 final size:13
Alignment explanation
Indices: 62599777--62599805 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
62599767 GGTTGTTTAT
62599777 TAAACTAATTAAC
1 TAAACTAATTAAC
62599790 TAAACTAATTAAC
1 TAAACTAATTAAC
62599803 TAA
1 TAA
62599806 TTAAACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:62603416 original size:29 final size:29
Alignment explanation
Indices: 62603377--62603451 Score: 98
Period size: 29 Copynumber: 2.6 Consensus size: 29
62603367 CTTAATAATC
*
62603377 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
62603407 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
62603436 AGCCCGCACACTTAGT
1 AACCCGCACACTTAGT
62603452 ACCAATCTCA
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
28 3 0.08
29 34 0.85
30 3 0.08
ACGTcount: A:0.28, C:0.32, G:0.15, T:0.25
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:62611757 original size:29 final size:29
Alignment explanation
Indices: 62611718--62611796 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
62611708 CTTAATAATC
*
62611718 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
62611748 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
62611777 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
62611797 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:62614441 original size:29 final size:28
Alignment explanation
Indices: 62614398--62614486 Score: 90
Period size: 29 Copynumber: 3.1 Consensus size: 28
62614388 AATGTGACTA
*
62614398 GGCCTAACGGGCCATATAAATGTGATTTG
1 GGCCTAA-TGGCCATATAAATGTGATTTG
** *
62614427 GGCCTAATGGTCCATATTCAGGTGATTTG
1 GGCCTAATGG-CCATATAAATGTGATTTG
* *
62614456 GGCCTAATAGGCCATATGAATATGA-TTG
1 GGCCTAAT-GGCCATATAAATGTGATTTG
62614484 GGC
1 GGC
62614487 TGAATGGGCT
Statistics
Matches: 50, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
28 8 0.16
29 40 0.80
30 2 0.04
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (28 bp):
GGCCTAATGGCCATATAAATGTGATTTG
Found at i:62618985 original size:28 final size:28
Alignment explanation
Indices: 62618904--62618989 Score: 118
Period size: 28 Copynumber: 3.0 Consensus size: 28
62618894 GTGAGCATGA
* *
62618904 ATATGAATGTGACTGGGCCTAACGGGCC
1 ATATGAATGTGATTGGGCCTAATGGGCC
*
62618932 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGA-TTGGGCCTAATGGGCC
* *
62618961 ATATGAATATGATTGGGCTTAATGGGCC
1 ATATGAATGTGATTGGGCCTAATGGGCC
62618989 A
1 A
62618990 GATACATGTA
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
28 27 0.53
29 24 0.47
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (28 bp):
ATATGAATGTGATTGGGCCTAATGGGCC
Found at i:62631235 original size:25 final size:25
Alignment explanation
Indices: 62631215--62631342 Score: 159
Period size: 25 Copynumber: 5.2 Consensus size: 25
62631205 TTAGCTCTTT
*
62631215 TGAGCTTACTGTTATTCAGCTCGTA
1 TGAGCTTACCGTTATTCAGCTCGTA
* ** * *
62631240 TGAGTTTATTGTTATTCAGCTTGAA
1 TGAGCTTACCGTTATTCAGCTCGTA
*
62631265 TGATCTTACCGTTATTCAGCTCGTA
1 TGAGCTTACCGTTATTCAGCTCGTA
*
62631290 TGAGCTTACCGTTATTCAGCTCGGA
1 TGAGCTTACCGTTATTCAGCTCGTA
* *
62631315 GGAGCTTACCGTT-TACAGCTCGTA
1 TGAGCTTACCGTTATTCAGCTCGTA
62631339 TGAG
1 TGAG
62631343 AATAAATGTA
Statistics
Matches: 87, Mismatches: 16, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
24 12 0.14
25 75 0.86
ACGTcount: A:0.21, C:0.20, G:0.22, T:0.38
Consensus pattern (25 bp):
TGAGCTTACCGTTATTCAGCTCGTA
Found at i:62638450 original size:30 final size:30
Alignment explanation
Indices: 62638416--62638476 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
62638406 TCCTGAACTC
62638416 AAACTTTTGCAAAATTACAATTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
* * *
62638446 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
62638476 A
1 A
62638477 GGCTCAGGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTTGCAAAATTACAATTTTGCCCCT
Found at i:62651401 original size:70 final size:70
Alignment explanation
Indices: 62651288--62651423 Score: 236
Period size: 70 Copynumber: 1.9 Consensus size: 70
62651278 TTAAATTGAA
* *
62651288 ATGTGAAAATGGTAAGGTTATTCGGGTTGAAACTAATGAATCAAGTGAATTGCCTATTGTGATTT
1 ATGTGAAAATGGTAAGGTTATTCAGGTTGAAACCAATGAATCAAGTGAATTGCCTATTGTGATTT
62651353 CGTTT
66 CGTTT
* *
62651358 ATGTGAAAATGGTGAGGTTATTCAGGTTGAAACCAATGAATCAAGTGAATTGCCTATTGTTATTT
1 ATGTGAAAATGGTAAGGTTATTCAGGTTGAAACCAATGAATCAAGTGAATTGCCTATTGTGATTT
62651423 C
66 C
62651424 ATCTATGTCT
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
70 62 1.00
ACGTcount: A:0.31, C:0.10, G:0.24, T:0.36
Consensus pattern (70 bp):
ATGTGAAAATGGTAAGGTTATTCAGGTTGAAACCAATGAATCAAGTGAATTGCCTATTGTGATTT
CGTTT
Found at i:62654134 original size:38 final size:38
Alignment explanation
Indices: 62654091--62654166 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
62654081 ACACAGCTCA
62654091 GTACATTCATATAATACATTACATGTACAAAGGTATAT
1 GTACATTCATATAATACATTACATGTACAAAGGTATAT
62654129 GTACATTCATATAATACATTACATGTACAAAGGTATAT
1 GTACATTCATATAATACATTACATGTACAAAGGTATAT
62654167 CAACTTCTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.42, C:0.13, G:0.11, T:0.34
Consensus pattern (38 bp):
GTACATTCATATAATACATTACATGTACAAAGGTATAT
Found at i:62655853 original size:40 final size:39
Alignment explanation
Indices: 62655777--62655857 Score: 99
Period size: 40 Copynumber: 2.1 Consensus size: 39
62655767 TATTTGGATA
* * * * * *
62655777 GATTTTTTGTTGTGTTGAATCCGAACATGTTGAACATCTT
1 GATTTATTCTTGTGATGAATCCAAACATGCTAAACAT-TT
62655817 GATTTATTCTTGTGATGAATCCAAACATGCTAAACATTT
1 GATTTATTCTTGTGATGAATCCAAACATGCTAAACATTT
62655856 GA
1 GA
62655858 CATTAGTGCT
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
39 4 0.11
40 31 0.89
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (39 bp):
GATTTATTCTTGTGATGAATCCAAACATGCTAAACATTT
Found at i:62666622 original size:25 final size:25
Alignment explanation
Indices: 62666594--62666726 Score: 140
Period size: 25 Copynumber: 5.3 Consensus size: 25
62666584 GGTTACCGAT
*
62666594 TTCAGCTCTTATGAGCTTACTATTA
1 TTCAGCTCGTATGAGCTTACTATTA
* *
62666619 TTCAGTTCGTATGAGCTTACTGTTA
1 TTCAGCTCGTATGAGCTTACTATTA
* * * * *
62666644 TTTAGCTCGGAGGAGCTTGCTACTA
1 TTCAGCTCGTATGAGCTTACTATTA
* *
62666669 TTTAGCTCGTATGAGCTTACCATTA
1 TTCAGCTCGTATGAGCTTACTATTA
* * **
62666694 TTCAACTCATATGAGCTTACCGTTA
1 TTCAGCTCGTATGAGCTTACTATTA
62666719 TTCAGCTC
1 TTCAGCTC
62666727 AGAGGAGCTT
Statistics
Matches: 88, Mismatches: 20, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 88 1.00
ACGTcount: A:0.23, C:0.21, G:0.17, T:0.39
Consensus pattern (25 bp):
TTCAGCTCGTATGAGCTTACTATTA
Found at i:62666720 original size:75 final size:76
Alignment explanation
Indices: 62666592--62666736 Score: 211
Period size: 75 Copynumber: 1.9 Consensus size: 76
62666582 AGGGTTACCG
* * ** * * * *
62666592 ATTTCAGCTCTTATGAGCTTACTATTATTCAGTTCGTATGAGCTTACTGTTATTTAGCTCGGAGG
1 ATTTCAGCTCGTATGAGCTTACCATTATTCAACTCATATGAGCTTACCGTTATTCAGCTCAGAGG
62666657 AGCTTGCTACT
66 AGCTTGCTACT
62666668 ATTT-AGCTCGTATGAGCTTACCATTATTCAACTCATATGAGCTTACCGTTATTCAGCTCAGAGG
1 ATTTCAGCTCGTATGAGCTTACCATTATTCAACTCATATGAGCTTACCGTTATTCAGCTCAGAGG
62666732 AGCTT
66 AGCTT
62666737 ATCGTTTATA
Statistics
Matches: 61, Mismatches: 8, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
75 57 0.93
76 4 0.07
ACGTcount: A:0.23, C:0.20, G:0.19, T:0.38
Consensus pattern (76 bp):
ATTTCAGCTCGTATGAGCTTACCATTATTCAACTCATATGAGCTTACCGTTATTCAGCTCAGAGG
AGCTTGCTACT
Found at i:62666758 original size:24 final size:25
Alignment explanation
Indices: 62666586--62666758 Score: 118
Period size: 25 Copynumber: 7.0 Consensus size: 25
62666576 GTCATTAGGG
* *
62666586 TTACCGAT-TTCAGCTCTTATGAGC
1 TTACCGTTATTCAGCTCATATGAGC
** * *
62666610 TTACTATTATTCAGTTCGTATGAGC
1 TTACCGTTATTCAGCTCATATGAGC
* * ** *
62666635 TTACTGTTATTTAGCTCGGAGGAGC
1 TTACCGTTATTCAGCTCATATGAGC
* *** * *
62666660 TTGCTACTATTTAGCTCGTATGAGC
1 TTACCGTTATTCAGCTCATATGAGC
* *
62666685 TTACCATTATTCAACTCATATGAGC
1 TTACCGTTATTCAGCTCATATGAGC
* *
62666710 TTACCGTTATTCAGCTCAGAGGAGC
1 TTACCGTTATTCAGCTCATATGAGC
*
62666735 TTATCGTT-TAT-AGCTCATATGAGC
1 TTACCGTTAT-TCAGCTCATATGAGC
62666759 ATACATGTAC
Statistics
Matches: 119, Mismatches: 28, Indels: 4
0.79 0.19 0.03
Matches are distributed among these distances:
24 17 0.14
25 102 0.86
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.38
Consensus pattern (25 bp):
TTACCGTTATTCAGCTCATATGAGC
Found at i:62666929 original size:26 final size:26
Alignment explanation
Indices: 62666900--62666951 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
62666890 CACAGGTATT
62666900 TACATGAGATATATGA-AAATGATTTG
1 TACATGAGATATA-GATAAATGATTTG
* *
62666926 TACATGATATATAGATACATGATTTG
1 TACATGAGATATAGATAAATGATTTG
62666952 CAAATTATAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 2 0.09
26 21 0.91
ACGTcount: A:0.40, C:0.06, G:0.17, T:0.37
Consensus pattern (26 bp):
TACATGAGATATAGATAAATGATTTG
Found at i:62676484 original size:26 final size:26
Alignment explanation
Indices: 62676455--62676507 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
62676445 TAATAAAAGA
62676455 TATAAAAGCTTAATCATTTGCATGTT
1 TATAAAAGCTTAATCATTTGCATGTT
62676481 TATAAAAGCTTAATCATTTGCATGTT
1 TATAAAAGCTTAATCATTTGCATGTT
62676507 T
1 T
62676508 TGCATTTTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.34, C:0.11, G:0.11, T:0.43
Consensus pattern (26 bp):
TATAAAAGCTTAATCATTTGCATGTT
Found at i:62682650 original size:16 final size:16
Alignment explanation
Indices: 62682611--62682651 Score: 50
Period size: 15 Copynumber: 2.6 Consensus size: 16
62682601 GTTGGATATG
62682611 ATAAAA-AGAACAAAT
1 ATAAAATAGAACAAAT
*
62682626 TTAAAATAGAA-AAAT
1 ATAAAATAGAACAAAT
62682641 ATAAATATAGA
1 ATAAA-ATAGA
62682652 GAATGGCACC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
15 13 0.59
16 9 0.41
ACGTcount: A:0.68, C:0.02, G:0.07, T:0.22
Consensus pattern (16 bp):
ATAAAATAGAACAAAT
Found at i:62694557 original size:50 final size:50
Alignment explanation
Indices: 62694444--62694833 Score: 342
Period size: 50 Copynumber: 7.8 Consensus size: 50
62694434 TGAAGCTATT
* * * * * *
62694444 TGATACGCATAGTAGCCTGCACTTAGTACTACACATGTGGCC-AACAATC
1 TGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCATC
* * * * *
62694493 CGGTACACGTAGTAGCTTGCAATTAGTACTACAGACGTGACCTCACCATC
1 TGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCATC
* * ** *
62694543 TGATACACGTAGTAGCCTGCACTTAATACTACACACGTGATCGAAGTCAT-
1 TGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCA-CCATC
* * * * * * *
62694593 TGAGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGA-CTTAACAGTA
1 TGA-TACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCA-TC
*
62694644 TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCATC
1 TGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCATC
* * ** *
62694694 TGATACACGTAGTAGCCTACACTTAGTACTACACACGTGATCGAAGTCAT-
1 TGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCA-CCATC
* * * * * * *
62694744 TGAGTACGCATAGTAGCCTACACTTAGTACTACACATGCGA-CTTAACAGTAC
1 TGA-TACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCA-T-C
*
62694796 -GGTACACGTAGTAGCCTGCACTTAGTACTACACACGTG
1 TGATACACGTAGTAGCCTGCACTTAGTACTACACACGTG
62694834 TATTCACAAT
Statistics
Matches: 274, Mismatches: 56, Indels: 21
0.78 0.16 0.06
Matches are distributed among these distances:
49 37 0.14
50 158 0.58
51 79 0.29
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (50 bp):
TGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCATC
Found at i:62694724 original size:151 final size:151
Alignment explanation
Indices: 62694443--62694833 Score: 660
Period size: 151 Copynumber: 2.6 Consensus size: 151
62694433 CTGAAGCTAT
* * * * *
62694443 TTGA-TACGCATAGTAGCCTGCACTTAGTACTACACATGTGGC-CAACAATCCGGTACACGTAGT
1 TTGAGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACTTAACAGTACGGTACACGTAGT
* * * *
62694506 AGCTTGCAATTAGTACTACAGACGTGACCTCACCATCTGATACACGTAGTAGCCTGCACTTAATA
66 AGCCTGCACTTAGTACTACACACGTGACCTCACCATCTGATACACGTAGTAGCCTACACTTAATA
62694571 CTACACACGTGATCGAAGTCA
131 CTACACACGTGATCGAAGTCA
*
62694592 TTGAGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACTTAACAGTATGGTACACGTAGT
1 TTGAGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACTTAACAGTACGGTACACGTAGT
*
62694657 AGCCTGCACTTAGTACTACACACGTGACCTCACCATCTGATACACGTAGTAGCCTACACTTAGTA
66 AGCCTGCACTTAGTACTACACACGTGACCTCACCATCTGATACACGTAGTAGCCTACACTTAATA
62694722 CTACACACGTGATCGAAGTCA
131 CTACACACGTGATCGAAGTCA
*
62694743 TTGAGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACTTAACAGTACGGTACACGTAGT
1 TTGAGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACTTAACAGTACGGTACACGTAGT
62694808 AGCCTGCACTTAGTACTACACACGTG
66 AGCCTGCACTTAGTACTACACACGTG
62694834 TATTCACAAT
Statistics
Matches: 227, Mismatches: 13, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
149 4 0.02
150 36 0.16
151 187 0.82
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (151 bp):
TTGAGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACTTAACAGTACGGTACACGTAGT
AGCCTGCACTTAGTACTACACACGTGACCTCACCATCTGATACACGTAGTAGCCTACACTTAATA
CTACACACGTGATCGAAGTCA
Found at i:62694758 original size:101 final size:100
Alignment explanation
Indices: 62694443--62694833 Score: 355
Period size: 101 Copynumber: 3.9 Consensus size: 100
62694433 CTGAAGCTAT
* * * * * *
62694443 TTGATACGCATAGTAGCCTGCACTTAGTACTACACATGTGGCC-AACAATCCGGTACACGTAGTA
1 TTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTA
* * * * ** *
62694507 GCTTGCAATTAGTACTACAGACGTGACCTCA-CCA
66 GCCTGCACTTAGTACTACACACGTGATCAAAGTCA
* * * * * * *
62694541 TCTGATACACGTAGTAGCCTGCACTTAATACTACACACGTGATCGAAGTCAT-TGAGTACGCATA
1 T-TGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-CCATCTGA-TACACGTA
* * *
62694605 GTAGCCTGCACTTAGTACTACACATGCGACTTAACAGT-A
63 GTAGCCTGCACTTAGTACTACACACGTGA-TCAA-AGTCA
* * *
62694644 -TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCATCTGATACACGTAGTA
1 TTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTA
* *
62694708 GCCTACACTTAGTACTACACACGTGATCGAAGTCA
66 GCCTGCACTTAGTACTACACACGTGATCAAAGTCA
* * * * * *
62694743 TTGAGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACTTAA-CAGTAC-GGTACACGTA
1 TTGA-TACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCA-T-CTGATACACGTA
62694806 GTAGCCTGCACTTAGTACTACACACGTG
63 GTAGCCTGCACTTAGTACTACACACGTG
62694834 TATTCACAAT
Statistics
Matches: 235, Mismatches: 45, Indels: 23
0.78 0.15 0.08
Matches are distributed among these distances:
98 4 0.02
99 39 0.17
100 42 0.18
101 147 0.63
102 1 0.00
103 2 0.01
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (100 bp):
TTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTA
GCCTGCACTTAGTACTACACACGTGATCAAAGTCA
Found at i:62697750 original size:26 final size:27
Alignment explanation
Indices: 62697696--62697750 Score: 62
Period size: 26 Copynumber: 2.1 Consensus size: 27
62697686 TTGTCGTAAA
*
62697696 TTCAAATCTTTTTGATTCATAAAATAT
1 TTCAAATCTTTTTGATTCATAAAAGAT
62697723 TTCAAA-CTTTTATGA-TCAGT-AAAGAT
1 TTCAAATCTTTT-TGATTCA-TAAAAGAT
62697749 TT
1 TT
62697751 GACATTTCTC
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
26 15 0.60
27 10 0.40
ACGTcount: A:0.36, C:0.11, G:0.07, T:0.45
Consensus pattern (27 bp):
TTCAAATCTTTTTGATTCATAAAAGAT
Found at i:62702353 original size:150 final size:151
Alignment explanation
Indices: 62702094--62702630 Score: 891
Period size: 151 Copynumber: 3.6 Consensus size: 151
62702084 AGCTATCTGA
*
62702094 TACGCATAGTAGCCTGCACTTAGTACTACACATGCGGC-CAACAATCA-GGTACACGTAGTAGCC
1 TACGCATAGTAGCCTGCACTTAGTACTACACATGCGACTCAACAAT-ATGGTACACGTAGTAGCC
* *
62702157 TGCACTTAGTACTACACACGTGACCTCACCATCTGATACACTTAGTACCCTGCACTTAGTACTAC
65 TGCACTTAGTACTACACACGTGACCTCACCATCTGATACACGTAGTACCCTACACTTAGTACTAC
62702222 ACACGTGATCGAAGTCATTGAG
130 ACACGTGATCGAAGTCATTGAG
**
62702244 TACGCATAGTAGCCTGCACTTAGTACTACACATGCGAC-CAACAATCCGGTACACGTAGTAGCCT
1 TACGCATAGTAGCCTGCACTTAGTACTACACATGCGACTCAACAATATGGTACACGTAGTAGCCT
*
62702308 GCACTTAGTACTACACAAGTGACCTCACCATCTGATACACGTAGTACCCTACACTTAGTACTACA
66 GCACTTAGTACTACACACGTGACCTCACCATCTGATACACGTAGTACCCTACACTTAGTACTACA
*
62702373 CATGTGATCGAAGTCATTGAG
131 CACGTGATCGAAGTCATTGAG
* * *
62702394 TACGCATAGTAGCCTGCACTTAGTACTACACATTCGACTTAACAGTATGGTACACGTAGTAGCCT
1 TACGCATAGTAGCCTGCACTTAGTACTACACATGCGACTCAACAATATGGTACACGTAGTAGCCT
* *
62702459 GCACTTAGTACTACACACGTGACCTCACCATCTGATAGACGTAGTAGCCTACACTTAGTACTACA
66 GCACTTAGTACTACACACGTGACCTCACCATCTGATACACGTAGTACCCTACACTTAGTACTACA
*
62702524 CACATGATCGAAGTCATTGAG
131 CACGTGATCGAAGTCATTGAG
* * * *
62702545 TACGCATTGTAGCCTACACTTAGTACTACACATGCGACTTAACAGTATGGTACACGTAGTAGCCT
1 TACGCATAGTAGCCTGCACTTAGTACTACACATGCGACTCAACAATATGGTACACGTAGTAGCCT
62702610 GCACTTAGTACTACACACGTG
66 GCACTTAGTACTACACACGTG
62702631 TATTCACAAT
Statistics
Matches: 366, Mismatches: 19, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
150 180 0.49
151 186 0.51
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (151 bp):
TACGCATAGTAGCCTGCACTTAGTACTACACATGCGACTCAACAATATGGTACACGTAGTAGCCT
GCACTTAGTACTACACACGTGACCTCACCATCTGATACACGTAGTACCCTACACTTAGTACTACA
CACGTGATCGAAGTCATTGAG
Found at i:62702627 original size:101 final size:100
Alignment explanation
Indices: 62702142--62702627 Score: 479
Period size: 101 Copynumber: 4.8 Consensus size: 100
62702132 CAACAATCAG
* * * * * *
62702142 GTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCATCTGATACACTTAGTACCC
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGTGA-CTCAACATCTGGTACACGTAGTAGCC
*
62702207 TGCACTTAGTACTACACACGTGATCGAAGTCATTGA
65 TGCACTTAGTACTACACACATGATCGAAGTCATTGA
* * *
62702243 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGAC-CAACAATCCGGTACACGTAGTAGCC
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGTGACTCAAC-ATCTGGTACACGTAGTAGCC
* ** *
62702307 TGCACTTAGTACTACACA-AGTGACCTCA-CCATCTGA
65 TGCACTTAGTACTACACACA-TGATCGAAGTCAT-TGA
* * * * *
62702343 -TACACGTAGTACCCTACACTTAGTACTACACATGTGA-TCGAAGTCAT-TGAGTACGCATAGTA
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGTGACTC-AA--CATCTG-GTACACGTAGTA
* **
62702405 GCCTGCACTTAGTACTACACA-TTCGACTTAACAGT-A-TG-
62 GCCTGCACTTAGTACTACACACAT-GA-TCGA-AGTCATTGA
* * * * *
62702443 GTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCATCTGATAGACGTAGTAGCC
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGTGA-CTCAACATCTGGTACACGTAGTAGCC
*
62702508 TACACTTAGTACTACACACATGATCGAAGTCATTGA
65 TGCACTTAGTACTACACACATGATCGAAGTCATTGA
* * * * * *
62702544 GTACGCATTGTAGCCTACACTTAGTACTACACATGCGACTTAACAGTATGGTACACGTAGTAGCC
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGTGACTCAACA-TCTGGTACACGTAGTAGCC
62702609 TGCACTTAGTACTACACAC
65 TGCACTTAGTACTACACAC
62702628 GTGTATTCAC
Statistics
Matches: 312, Mismatches: 52, Indels: 42
0.77 0.13 0.10
Matches are distributed among these distances:
98 3 0.01
99 42 0.13
100 87 0.28
101 174 0.56
102 2 0.01
103 4 0.01
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.25
Consensus pattern (100 bp):
GTACACATAGTAGCCTGCACTTAGTACTACACATGTGACTCAACATCTGGTACACGTAGTAGCCT
GCACTTAGTACTACACACATGATCGAAGTCATTGA
Found at i:62706033 original size:39 final size:40
Alignment explanation
Indices: 62705990--62706162 Score: 163
Period size: 40 Copynumber: 4.3 Consensus size: 40
62705980 CCTACGGGAA
* * * *
62705990 TTTAAACTCGG-TATAATACCAACTCGTAGCCTGCGGGTC
1 TTTAAACCCGGATACAATACCAACACGAAGCCTGCGGGTC
* * *
62706029 TTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGGTC
1 TTTAAACCCGGATACAATACCAACACGAAGCCTGCGGGTC
* * * * *
62706069 TTTAAGCCCGGATA-ACATTCTACCA-TATAGCCTGCGGGTC
1 TTTAAACCCGGATACA-ATACCAACACGA-AGCCTGCGGGTC
* * *
62706109 TTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGGTC
1 TTTAAACCCGGATACAATACCAACACGAAGCCTGCGGGTC
*
62706149 TTTAAGCCCGGATA
1 TTTAAACCCGGATA
62706163 ACATTCCTCA
Statistics
Matches: 116, Mismatches: 13, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
39 11 0.09
40 103 0.89
41 2 0.02
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
TTTAAACCCGGATACAATACCAACACGAAGCCTGCGGGTC
Found at i:62706110 original size:80 final size:80
Alignment explanation
Indices: 62706016--62706168 Score: 306
Period size: 80 Copynumber: 1.9 Consensus size: 80
62706006 TACCAACTCG
62706016 TAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGA
1 TAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGA
62706081 TAACATTCTACCATA
66 TAACATTCTACCATA
62706096 TAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGA
1 TAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGA
62706161 TAACATTC
66 TAACATTC
62706169 CTCAAGTATC
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
80 73 1.00
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.24
Consensus pattern (80 bp):
TAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGA
TAACATTCTACCATA
Found at i:62706169 original size:40 final size:40
Alignment explanation
Indices: 62706017--62706162 Score: 233
Period size: 40 Copynumber: 3.6 Consensus size: 40
62706007 ACCAACTCGT
62706017 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
* * *
62706057 AGCCTGCGGGTCTTTAAGCCCGGATA-ACATTCTACCA-TA
1 AGCCTGCGGGTCTTTAAGCCCGGATACA-ATTCCAGCACGA
62706096 TAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
1 -AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
62706137 AGCCTGCGGGTCTTTAAGCCCGGATA
1 AGCCTGCGGGTCTTTAAGCCCGGATA
62706163 ACATTCCTCA
Statistics
Matches: 96, Mismatches: 6, Indels: 8
0.87 0.05 0.07
Matches are distributed among these distances:
39 2 0.02
40 92 0.96
41 2 0.02
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.23
Consensus pattern (40 bp):
AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
Found at i:62726724 original size:141 final size:140
Alignment explanation
Indices: 62726311--62726728 Score: 509
Period size: 139 Copynumber: 3.0 Consensus size: 140
62726301 AGTCCTAAGA
* * * * * *
62726311 CGACACTTTTGGGCTGACACTTTCTTAAGTGTTGGAATAGACTTGTCGATATACGTTTTGGTCAA
1 CGACACTTTTGGGCTAACACTTTCCTAAGTGTTGGAATAGGCTTGTCGACATACATTTTGGCCAA
* * * * *
62726376 TTCTTTGTATAAGGGTAGGGATATGCATGCCTAAAGCAACGCTTAAATAAGAGTTGGCTTTGTCC
66 CTCTTTGTATAAGGGTTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCGGCTTTGTTC
62726441 AACACTATGC
131 AACACTATGC
* ** *
62726451 CAACACTTTTGGG-TTGCACTTTCCTAAGTGTTGGAAT-GGACTTGTCGACATACACTTTGGCCA
1 CGACACTTTTGGGCTAACACTTTCCTAAGTGTTGGAATAGG-CTTGTCGACATACATTTTGGCCA
* * *
62726514 ACTCTTTGTATAATGGCTGGGATATGCATGCCTAAGGCAATGCTTAAATAAGAGTCGGCTTT-TT
65 ACTCTTTGTATAAGGGTTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCGGCTTTGTT
*
62726578 CCAACACTATGT
130 -CAACACTATGC
* * * * * *
62726590 CGACACTTTTGGGCCAACACATTCCTAAGTCTTGGGATAGGCTTGCCAACATACATTTTGGCCAA
1 CGACACTTTTGGGCTAACACTTTCCTAAGTGTTGGAATAGGCTTGTCGACATACATTTTGGCCAA
* * * * * *
62726655 CTCTTTTTATAAGGGGTTGAGAAATGTATGCCTAAGGCAACACTTAAATAAGAGTCAGCTTTGTT
66 CTCTTTGTATAA-GGGTTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCGGCTTTGTT
62726720 CAACACTAT
130 CAACACTAT
62726729 AACGACTTCT
Statistics
Matches: 235, Mismatches: 37, Indels: 11
0.83 0.13 0.04
Matches are distributed among these distances:
138 2 0.01
139 117 0.50
140 62 0.26
141 52 0.22
142 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.32
Consensus pattern (140 bp):
CGACACTTTTGGGCTAACACTTTCCTAAGTGTTGGAATAGGCTTGTCGACATACATTTTGGCCAA
CTCTTTGTATAAGGGTTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCGGCTTTGTTC
AACACTATGC
Found at i:62727509 original size:70 final size:70
Alignment explanation
Indices: 62727300--62727614 Score: 212
Period size: 70 Copynumber: 4.5 Consensus size: 70
62727290 CCAACCCACC
* * * * * * * * *
62727300 TCCCTAACCTTTTTAAGTTTGCCTTAGACGACTCTAGCCCAATCT-TTTTAAGTTCGTCTTAGAT
1 TCCC-AACCTTTTTATGGTTGCCTTAGACAAGTCTACCCCAACCTCTTTTAGGTT-GCCTTAGAA
*
62727364 G-GTGTA
64 GAGTCTA
* * * * ** * *
62727370 CCCCAATCTTTTTCA-GGTTACCTTAGACGAGTCCGCCCTAA-CTTTTTTAAGGTTGCCTTA-AA
1 TCCCAACCTTTTT-ATGGTTGCCTTAGACAAGTCTACCCCAACCTCTTTT-AGGTTGCCTTAGAA
*
62727432 CAGGTCTA
64 GA-GTCTA
* ** * * **
62727440 TCCCGACCTTTTTATGGTTGCCTTAGACGGGTTTACCCCGACC-CTTTTAAGGTTGCCTTAGGTG
1 TCCCAACCTTTTTATGGTTGCCTTAGACAAGTCTACCCCAACCTCTTTT-AGGTTGCCTTAGAAG
62727504 AGTCTA
65 AGTCTA
* * ** * *
62727510 TGCCAACATTTTTATGGTTGTTTTAAACAAGTCTACCCTAACCTCTTTTAGGTTGCCTTAGAAGA
1 TCCCAACCTTTTTATGGTTGCCTTAGACAAGTCTACCCCAACCTCTTTTAGGTTGCCTTAGAAGA
62727575 GTCTA
66 GTCTA
* *
62727580 CCCCAACCTTTTT-TAGGTTGCCTTAGACAGGTCTA
1 TCCCAACCTTTTTAT-GGTTGCCTTAGACAAGTCTA
62727615 TCCTAACATT
Statistics
Matches: 187, Mismatches: 48, Indels: 20
0.73 0.19 0.08
Matches are distributed among these distances:
68 3 0.02
69 38 0.20
70 139 0.74
71 7 0.04
ACGTcount: A:0.21, C:0.24, G:0.17, T:0.37
Consensus pattern (70 bp):
TCCCAACCTTTTTATGGTTGCCTTAGACAAGTCTACCCCAACCTCTTTTAGGTTGCCTTAGAAGA
GTCTA
Found at i:62727614 original size:105 final size:105
Alignment explanation
Indices: 62727302--62727627 Score: 261
Period size: 105 Copynumber: 3.1 Consensus size: 105
62727292 AACCCACCTC
* * * * * * * * * *
62727302 CCTAACCTTTTTAAGTTTGCCTTAGACGACTCTAGCCCAATCTTTTTA-AGTTCGTCTTAGATG-
1 CCTAACATTTTTAAGGTTGCCTTAAACAAGTCTATCCCAACCTTTTTATGGTT-GCCTTAGAAGA
* * * * * ***
62727365 GTGTACCCCAATCTTTTTCAGGTTACCTTAG-ACGAGTCCGC
65 GTCTACCCCAACCCTTTTAAGGTTGCCTTAGCA-GAGTCTAT
* * * * *
62727406 CCTAACTTTTTTAAGGTTGCCTTAAACAGGTCTATCCCGACCTTTTTATGGTTGCCTTAGACGGG
1 CCTAACATTTTTAAGGTTGCCTTAAACAAGTCTATCCCAACCTTTTTATGGTTGCCTTAGAAGAG
* * **
62727471 TTTACCCCGACCCTTTTAAGGTTGCCTTAGGTGAGTCTAT
66 TCTACCCCAACCCTTTTAAGGTTGCCTTAGCAGAGTCTAT
* **
62727511 GCC-AACATTTTTATGGTTGTTTTAAACAAGTCTA-CCCTAACCTCTTTTA-GGTTGCCTTAGAA
1 -CCTAACATTTTTAAGGTTGCCTTAAACAAGTCTATCCC-AACCT-TTTTATGGTTGCCTTAGAA
* *
62727573 GAGTCTACCCCAACCTTTTTTAGGTTGCCTTAGACAG-GTCTAT
63 GAGTCTACCCCAACCCTTTTAAGGTTGCCTTAG-CAGAGTCTAT
62727616 CCTAACATTTTT
1 CCTAACATTTTT
62727628 TTAGTCGAGT
Statistics
Matches: 178, Mismatches: 36, Indels: 15
0.78 0.16 0.07
Matches are distributed among these distances:
104 52 0.29
105 118 0.66
106 8 0.04
ACGTcount: A:0.21, C:0.24, G:0.17, T:0.37
Consensus pattern (105 bp):
CCTAACATTTTTAAGGTTGCCTTAAACAAGTCTATCCCAACCTTTTTATGGTTGCCTTAGAAGAG
TCTACCCCAACCCTTTTAAGGTTGCCTTAGCAGAGTCTAT
Found at i:62727620 original size:70 final size:72
Alignment explanation
Indices: 62727368--62727621 Score: 220
Period size: 70 Copynumber: 3.6 Consensus size: 72
62727358 TTAGATGGTG
* * * ** *
62727368 TACCCCAATCTTTTTCA-GGTTACCTTAGAC-GAGTCCGCCCTAA-CTTTTTTAAGGTTGCCTTA
1 TACCCCAACCTTTTTTATGGTTGCCTTAGACAG-GTCTACCCTAACCTCTTTTAAGGTTGCCTTA
*
62727430 -AACAGGTC
65 GAAGA-GTC
* * * * **
62727438 TATCCCGACC-TTTTTATGGTTGCCTTAGACGGGTTTACCCCGACC-CTTTTAAGGTTGCCTTAG
1 TACCCCAACCTTTTTTATGGTTGCCTTAGACAGGTCTACCCTAACCTCTTTTAAGGTTGCCTTAG
**
62727501 GTGAGTC
66 AAGAGTC
** * ** * *
62727508 TATGCCAA-CATTTTTATGGTTGTTTTAAACAAGTCTACCCTAACCTCTTTT-AGGTTGCCTTAG
1 TACCCCAACCTTTTTTATGGTTGCCTTAGACAGGTCTACCCTAACCTCTTTTAAGGTTGCCTTAG
62727571 AAGAGTC
66 AAGAGTC
*
62727578 TACCCCAACCTTTTTTA-GGTTGCCTTAGACAGGTCTATCCTAAC
1 TACCCCAACCTTTTTTATGGTTGCCTTAGACAGGTCTACCCTAAC
62727622 ATTTTTTTAG
Statistics
Matches: 143, Mismatches: 34, Indels: 14
0.75 0.18 0.07
Matches are distributed among these distances:
69 6 0.04
70 122 0.85
71 15 0.10
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (72 bp):
TACCCCAACCTTTTTTATGGTTGCCTTAGACAGGTCTACCCTAACCTCTTTTAAGGTTGCCTTAG
AAGAGTC
Found at i:62727628 original size:35 final size:35
Alignment explanation
Indices: 62727305--62727628 Score: 180
Period size: 35 Copynumber: 9.3 Consensus size: 35
62727295 CCACCTCCCT
* * * *
62727305 AACCTTTTTAAGTTTGCCTTAGAC-GACTCTAGCCC
1 AACCTTTTTTAGGTTGCCTTAGACAG-GTCTACCCC
* * * * *
62727340 AATC-TTTTTAAGTTCGTCTTAGA-TGGTGTACCCC
1 AACCTTTTTTAGGTT-GCCTTAGACAGGTCTACCCC
* * * ** *
62727374 AATCTTTTTCAGGTTACCTTAGAC-GAGTCCGCCCT
1 AACCTTTTTTAGGTTGCCTTAGACAG-GTCTACCCC
* *
62727409 AA-CTTTTTTAAGGTTGCCTTAAACAGGTCTATCCC
1 AACCTTTTTT-AGGTTGCCTTAGACAGGTCTACCCC
* * *
62727444 GACC-TTTTTATGGTTGCCTTAGACGGGTTTACCCC
1 AACCTTTTTTA-GGTTGCCTTAGACAGGTCTACCCC
* * * ** **
62727479 GACCCTTTTAAGGTTGCCTTAG-GTGAGTCTATGCC
1 AACCTTTTTTAGGTTGCCTTAGACAG-GTCTACCCC
* ** * * *
62727514 AA-CATTTTTATGGTTGTTTTAAACAAGTCTACCCT
1 AACCTTTTTTA-GGTTGCCTTAGACAGGTCTACCCC
*
62727549 AACCTCTTTTAGGTTGCCTTAGA-AGAGTCTACCCC
1 AACCTTTTTTAGGTTGCCTTAGACAG-GTCTACCCC
* *
62727584 AACCTTTTTTAGGTTGCCTTAGACAGGTCTATCCT
1 AACCTTTTTTAGGTTGCCTTAGACAGGTCTACCCC
*
62727619 AACATTTTTT
1 AACCTTTTTT
62727629 TAGTCGAGTT
Statistics
Matches: 216, Mismatches: 57, Indels: 32
0.71 0.19 0.10
Matches are distributed among these distances:
34 39 0.18
35 162 0.75
36 15 0.07
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.38
Consensus pattern (35 bp):
AACCTTTTTTAGGTTGCCTTAGACAGGTCTACCCC
Found at i:62727842 original size:35 final size:35
Alignment explanation
Indices: 62727765--62727842 Score: 104
Period size: 34 Copynumber: 2.3 Consensus size: 35
62727755 CTTTATTTTG
* * * *
62727765 ACCTTTTTTTGTGTCGTTGATTTCTTCCTATTCCG
1 ACCTTTTTTTGGGTCATTGATTTCCTCCTATTCCA
*
62727800 ACC-TTTTTTGGGTCATTTATTTCCTCCTATTCCA
1 ACCTTTTTTTGGGTCATTGATTTCCTCCTATTCCA
62727834 ACCTTTTTT
1 ACCTTTTTT
62727843 AAAGGTCGGC
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
34 29 0.78
35 8 0.22
ACGTcount: A:0.12, C:0.24, G:0.10, T:0.54
Consensus pattern (35 bp):
ACCTTTTTTTGGGTCATTGATTTCCTCCTATTCCA
Found at i:62729774 original size:29 final size:29
Alignment explanation
Indices: 62729727--62729794 Score: 93
Period size: 29 Copynumber: 2.4 Consensus size: 29
62729717 TCTCAGGATC
*
62729727 AAAATAA-TATATCAGTTTAAATATTATT
1 AAAATAATTAAATCAGTTTAAATATTATT
* *
62729755 TAAATAATTAAATCATTTTAAATATTATT
1 AAAATAATTAAATCAGTTTAAATATTATT
*
62729784 AAAATCATTAA
1 AAAATAATTAA
62729795 TCTTAATTAC
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
28 6 0.18
29 28 0.82
ACGTcount: A:0.51, C:0.04, G:0.01, T:0.43
Consensus pattern (29 bp):
AAAATAATTAAATCAGTTTAAATATTATT
Found at i:62729776 original size:18 final size:20
Alignment explanation
Indices: 62729753--62729792 Score: 57
Period size: 18 Copynumber: 2.0 Consensus size: 20
62729743 TTAAATATTA
62729753 TTTAAATA-ATT-AAATCAT
1 TTTAAATATATTAAAATCAT
62729771 TTTAAATATTATTAAAATCAT
1 TTTAAATA-TATTAAAATCAT
62729792 T
1 T
62729793 AATCTTAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 8 0.42
20 3 0.16
21 8 0.42
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.47
Consensus pattern (20 bp):
TTTAAATATATTAAAATCAT
Found at i:62730647 original size:18 final size:18
Alignment explanation
Indices: 62730624--62730663 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
62730614 TCCTAGAATT
*
62730624 CTTCCTCCATGTTTTCTA
1 CTTCCTCCATATTTTCTA
62730642 CTTCCTCCATATTTTCTA
1 CTTCCTCCATATTTTCTA
62730660 CTTC
1 CTTC
62730664 TTCCCCCTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.12, C:0.35, G:0.03, T:0.50
Consensus pattern (18 bp):
CTTCCTCCATATTTTCTA
Found at i:62735275 original size:29 final size:29
Alignment explanation
Indices: 62735236--62735314 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
62735226 CTTAATAATC
*
62735236 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
62735266 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
62735295 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
62735315 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:62744914 original size:23 final size:22
Alignment explanation
Indices: 62744885--62744929 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
62744875 TAAAACATCA
62744885 AAATTTTTATACAAGTACTATC
1 AAATTTTTATACAAGTACTATC
62744907 AAATTTTTATACAAGTACTATC
1 AAATTTTTATACAAGTACTATC
62744929 A
1 A
62744930 CACATATAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.42, C:0.13, G:0.04, T:0.40
Consensus pattern (22 bp):
AAATTTTTATACAAGTACTATC
Found at i:62752440 original size:55 final size:53
Alignment explanation
Indices: 62752315--62752503 Score: 204
Period size: 55 Copynumber: 3.5 Consensus size: 53
62752305 AACTTACCAT
* * * * *
62752315 TGCCATGTCTTGACATGGCCTTACGTGGTATCCTTGCCTTAT-GAACTCACCAT
1 TGCCATGCCTTGACATGGTCTTACATGG-ATCCTTGCCTTATAGAACTCATCAA
*
62752368 TGCCATGCCTTGGCATGGTCTTACATAGGA-CCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACAT-GGATCC-TTGCCTTATAG-AACTCATCAA
* * *
62752423 TGCCATGTCTTGACATGGTCTTACAT-GATTTCATTGCCTTATAGAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGA--TCCTTGCCTTATAGAACTCATCAA
* *
62752477 TGCCATACCTTGGCATGGTCTTACATG
1 TGCCATGCCTTGACATGGTCTTACATG
62752504 ATATCCTTAT
Statistics
Matches: 115, Mismatches: 13, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
52 2 0.02
53 34 0.30
54 35 0.30
55 43 0.37
56 1 0.01
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (53 bp):
TGCCATGCCTTGACATGGTCTTACATGGATCCTTGCCTTATAGAACTCATCAA
Found at i:62752544 original size:47 final size:47
Alignment explanation
Indices: 62752490--62752611 Score: 208
Period size: 47 Copynumber: 2.6 Consensus size: 47
62752480 CATACCTTGG
62752490 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
* *
62752537 CATGGTCTTACATGATATCTTTATCTTACCAAATGCCATTTTCCAAA
1 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
* *
62752584 CATGGTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGATATCCTTATCTTA
62752612 GTGCTAATTC
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 70 1.00
ACGTcount: A:0.27, C:0.24, G:0.11, T:0.38
Consensus pattern (47 bp):
CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
Found at i:62752690 original size:47 final size:45
Alignment explanation
Indices: 62752634--62752745 Score: 120
Period size: 45 Copynumber: 2.4 Consensus size: 45
62752624 CATCTTGATG
* * *
62752634 TGGTCTTACAT-AGAGTCCTTAATCAATGCCGATGCCATGTCTTGACA
1 TGGTCTTACATGAGA-TCCTT--GCAATACCAATGCCATGTCTTGACA
* **
62752681 TGGTCTTACATGGGATCCTTGCCTTACCAATGCCATGTCTTGACA
1 TGGTCTTACATGAGATCCTTGCAATACCAATGCCATGTCTTGACA
62752726 TGGTCTTACATG-GTATCCTT
1 TGGTCTTACATGAG-ATCCTT
62752746 AACCATCAAT
Statistics
Matches: 57, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
44 1 0.02
45 38 0.67
47 16 0.28
48 2 0.04
ACGTcount: A:0.21, C:0.24, G:0.20, T:0.35
Consensus pattern (45 bp):
TGGTCTTACATGAGATCCTTGCAATACCAATGCCATGTCTTGACA
Found at i:62752816 original size:43 final size:43
Alignment explanation
Indices: 62752751--62752833 Score: 105
Period size: 43 Copynumber: 1.9 Consensus size: 43
62752741 TCCTTAACCA
* *
62752751 TCAATTCCTCCTTAAATGCCATGTTATGAA-CATGGACTTTCCG
1 TCAATTCCTCCTTAAATGCCATGGTA-CAACCATGGACTTTCCG
* * *
62752794 TCAATTCTTCCTTAATTTCCATGGTACAACCATGGACTTT
1 TCAATTCCTCCTTAAATGCCATGGTACAACCATGGACTTT
62752834 AAGATATCAA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
42 2 0.06
43 32 0.94
ACGTcount: A:0.25, C:0.25, G:0.12, T:0.37
Consensus pattern (43 bp):
TCAATTCCTCCTTAAATGCCATGGTACAACCATGGACTTTCCG
Found at i:62754685 original size:49 final size:49
Alignment explanation
Indices: 62754512--62754743 Score: 268
Period size: 49 Copynumber: 4.7 Consensus size: 49
62754502 TCTATTGTGA
* * * * *
62754512 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCGAAAACTGT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAA-T-T
* * * **
62754563 GATCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTA-TCAGATGGTT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACT-GGATAATT
* *
62754612 AGGTCACGTGTGTACTATTAAGTGCAGGCTACTACGTGTACTGGATAATT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATT
*
62754662 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATT
* ** *
62754711 GGTCTCACGTGTAGTACTATGTGCAGGCTACTA
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
62754744 TGCGTACCAG
Statistics
Matches: 155, Mismatches: 23, Indels: 8
0.83 0.12 0.04
Matches are distributed among these distances:
49 76 0.49
50 42 0.27
51 37 0.24
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (49 bp):
GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATT
Found at i:62754698 original size:99 final size:101
Alignment explanation
Indices: 62754511--62754750 Score: 297
Period size: 99 Copynumber: 2.4 Consensus size: 101
62754501 ATCTATTGTG
* *
62754511 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCGAAAACTGTGATCACGTGTGTA
1 AGGTCACATGTGTACTACTAAGTGCAGGCTACTACGCGTACTCGAAAACTGTGATCACGTGTGTA
62754576 GTACTAAGTGCAAGCTACTACGTGTATCAGATGGTT
66 GTACTAAGTGCAAGCTACTACGTGTATCAGATGGTT
* * * * * *
62754612 AGGTCACGTGTGTACTATTAAGTGCAGGCTACTACGTGTACTGGATAA-T-TGGTCACGTGTGTA
1 AGGTCACATGTGTACTACTAAGTGCAGGCTACTACGCGTACTCGAAAACTGTGATCACGTGTGTA
* * * **
62754675 GTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
66 GTACTAAGTGCAAGCTACTACGTGTATCAGATGGTT
* * * * *
62754711 -GGTCTCACGTGTAGTACTATGTGCAGGCTACTATGCGTAC
1 AGGTCACATGTGTACTACTAAGTGCAGGCTACTACGCGTAC
62754751 CAGATAGCTT
Statistics
Matches: 118, Mismatches: 21, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
98 32 0.27
99 44 0.37
100 1 0.01
101 41 0.35
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (101 bp):
AGGTCACATGTGTACTACTAAGTGCAGGCTACTACGCGTACTCGAAAACTGTGATCACGTGTGTA
GTACTAAGTGCAAGCTACTACGTGTATCAGATGGTT
Found at i:62757772 original size:15 final size:14
Alignment explanation
Indices: 62757747--62757809 Score: 72
Period size: 15 Copynumber: 4.2 Consensus size: 14
62757737 CATAGTATCG
62757747 TATCTTGGGTTTCTT
1 TATC-TGGGTTTCTT
62757762 TACTCTGGGTTTCTT
1 TA-TCTGGGTTTCTT
*
62757777 TATTCTGGGTTTCTC
1 TA-TCTGGGTTTCTT
*
62757792 TATCTTGGATTTCTT
1 TATC-TGGGTTTCTT
62757807 TAT
1 TAT
62757810 TCAGTTTCCT
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
14 2 0.05
15 38 0.90
16 2 0.05
ACGTcount: A:0.10, C:0.16, G:0.17, T:0.57
Consensus pattern (14 bp):
TATCTGGGTTTCTT
Found at i:62757788 original size:30 final size:30
Alignment explanation
Indices: 62757752--62757811 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
62757742 TATCGTATCT
* *
62757752 TGGGTTTCTTTA-CTCTGGGTTTCTTTATTC
1 TGGGTTTCTCTATCT-TGGATTTCTTTATTC
62757782 TGGGTTTCTCTATCTTGGATTTCTTTATTC
1 TGGGTTTCTCTATCTTGGATTTCTTTATTC
62757812 AGTTTCCTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 25 0.93
31 2 0.07
ACGTcount: A:0.08, C:0.17, G:0.18, T:0.57
Consensus pattern (30 bp):
TGGGTTTCTCTATCTTGGATTTCTTTATTC
Found at i:62760082 original size:49 final size:49
Alignment explanation
Indices: 62759955--62760178 Score: 279
Period size: 49 Copynumber: 4.5 Consensus size: 49
62759945 TGAGGTCGCA
* * * * *
62759955 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-T-TGGTCACG
* **
62760006 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACG
* *
62760056 TGTGT-GTATTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
** * *
62760104 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
*
62760153 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
62760179 TGCATACTAG
Statistics
Matches: 153, Mismatches: 18, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
48 12 0.08
49 96 0.63
50 12 0.08
51 33 0.22
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
Found at i:62769352 original size:40 final size:40
Alignment explanation
Indices: 62769308--62769396 Score: 144
Period size: 40 Copynumber: 2.2 Consensus size: 40
62769298 ATCAGACGAT
* *
62769308 TTATTCAT-TTGACTTGATCTGTAGAAATCCCTATGTTATA
1 TTATT-ATCTTGACTTGATCCGTAGAAATCCCTAAGTTATA
62769348 TTATTATCTTGACTTGATCCGTAGAAATCCCTAAGTTATA
1 TTATTATCTTGACTTGATCCGTAGAAATCCCTAAGTTATA
62769388 TTATTATCT
1 TTATTATCT
62769397 CGAAACTAAT
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
39 2 0.04
40 44 0.96
ACGTcount: A:0.28, C:0.16, G:0.11, T:0.45
Consensus pattern (40 bp):
TTATTATCTTGACTTGATCCGTAGAAATCCCTAAGTTATA
Found at i:62770229 original size:19 final size:19
Alignment explanation
Indices: 62770205--62770243 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
62770195 CCATGTGGGT
*
62770205 CCATTTTCTCTTTTTTCAG
1 CCATTTTCTCTATTTTCAG
62770224 CCATTTTCTCTATTTTCAG
1 CCATTTTCTCTATTTTCAG
62770243 C
1 C
62770244 TCGTTTCTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.13, C:0.28, G:0.05, T:0.54
Consensus pattern (19 bp):
CCATTTTCTCTATTTTCAG
Found at i:62770250 original size:19 final size:19
Alignment explanation
Indices: 62770209--62770252 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
62770199 GTGGGTCCAT
* *
62770209 TTTCTCTTTTTTCAGCCAT
1 TTTCTCTATTTTCAGCCAG
62770228 TTTCTCTATTTTCAGCTC-G
1 TTTCTCTATTTTCAGC-CAG
62770247 TTTCTC
1 TTTCTC
62770253 ACTCTTTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 21 0.95
20 1 0.05
ACGTcount: A:0.09, C:0.27, G:0.07, T:0.57
Consensus pattern (19 bp):
TTTCTCTATTTTCAGCCAG
Found at i:62774626 original size:93 final size:93
Alignment explanation
Indices: 62774467--62774637 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
62774457 GCCCATAAGT
* *
62774467 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
62774532 CGAGCTCAGATGCCTAGTTACATCTCTC
66 CGAGCTCAGATGCCTAGTTACATCTCTC
*
62774560 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
* *
62774625 CGAGTTCGGATGC
66 CGAGCTCAGATGC
62774638 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCAGATGCCTAGTTACATCTCTC
Found at i:62774634 original size:46 final size:46
Alignment explanation
Indices: 62774459--62774634 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
62774449 TGTAACCCGC
* *
62774459 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
62774505 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC--AGATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
62774551 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
62774598 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
62774635 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 68 0.63
47 30 0.28
49 5 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:62778553 original size:92 final size:91
Alignment explanation
Indices: 62778389--62778556 Score: 275
Period size: 92 Copynumber: 1.8 Consensus size: 91
62778379 GCCCATAAGT
* *
62778389 GAACTCGGACTCAACTCAACAGCTCGGGCGTTCGCATCCATAAGTGAACTCGACTCAACTCAACG
1 GAACTCGGACTCAACTCAACAGCTCGGACATTCGCATCCATAAGTGAACTCGACTCAACTCAACG
62778454 AGCTCGGATGCCTAGTTACATCTCTC
66 AGCTCGGATGCCTAGTTACATCTCTC
*
62778480 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAAC-AGCTCGGACATTCGCATCCATAAGTGAACTC-GACTCAACTCAA
*
62778545 C-AGTTCGGATGC
64 CGAGCTCGGATGC
62778557 TCAACCATCC
Statistics
Matches: 71, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
91 20 0.28
92 38 0.54
93 13 0.18
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.21
Consensus pattern (91 bp):
GAACTCGGACTCAACTCAACAGCTCGGACATTCGCATCCATAAGTGAACTCGACTCAACTCAACG
AGCTCGGATGCCTAGTTACATCTCTC
Found at i:62778572 original size:45 final size:46
Alignment explanation
Indices: 62778386--62778572 Score: 117
Period size: 45 Copynumber: 4.1 Consensus size: 46
62778376 CCCGCCCATA
** * *
62778386 AGTGAACTCGGACTCAACTCAAC-AGCTCGGGCGTTC--GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCAACCATCC-T
62778430 AAGTGAACTC-GACTCAACTCAACGAGCTCGGATGC-CTAGTTA-CATCTCT
1 -AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTC-A---ACCATC-CT
* * * * * *
62778479 --CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGCTCAACCATCCT
*
62778523 AGTGAACTCGGACTCAACTCAAC-AGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCAACCATCCT
62778568 AGTGA
1 AGTGA
62778573 CATGTCGCTT
Statistics
Matches: 112, Mismatches: 13, Indels: 34
0.70 0.08 0.21
Matches are distributed among these distances:
43 9 0.08
44 14 0.12
45 29 0.26
46 26 0.23
47 23 0.21
49 9 0.08
50 2 0.02
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCAACCATCCT
Found at i:62783129 original size:20 final size:20
Alignment explanation
Indices: 62783104--62783155 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
62783094 CGAGTAAGGG
62783104 ACACGGGCGTGTCCCAAAGC
1 ACACGGGCGTGTCCCAAAGC
* *
62783124 ACACGGGCATTTCCCAAAGC
1 ACACGGGCGTGTCCCAAAGC
*
62783144 ACACGGGTGTGT
1 ACACGGGCGTGT
62783156 GCATTGCCTC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.25, C:0.31, G:0.29, T:0.15
Consensus pattern (20 bp):
ACACGGGCGTGTCCCAAAGC
Found at i:62788022 original size:29 final size:29
Alignment explanation
Indices: 62787985--62788090 Score: 87
Period size: 29 Copynumber: 3.7 Consensus size: 29
62787975 GATAAATGAG
62787985 ATTGGGCCTAATAGG-CCATAAGAATGTGA
1 ATTGGGCCTAAT-GGACCATAAGAATGTGA
* * * *
62788014 ATTGGGCCTGATGGACTATATGAACGTGA
1 ATTGGGCCTAATGGACCATAAGAATGTGA
* *
62788043 ATTGGG-CTGGATAGG-CCATATA-AATGAG-
1 ATTGGGCCT-AAT-GGACCATA-AGAATGTGA
62788071 ATTGGGCCTAATGGACCATA
1 ATTGGGCCTAATGGACCATA
62788091 TGCATGCATA
Statistics
Matches: 62, Mismatches: 9, Indels: 13
0.74 0.11 0.15
Matches are distributed among these distances:
27 2 0.03
28 17 0.27
29 41 0.66
30 2 0.03
ACGTcount: A:0.31, C:0.14, G:0.29, T:0.25
Consensus pattern (29 bp):
ATTGGGCCTAATGGACCATAAGAATGTGA
Found at i:62804429 original size:40 final size:40
Alignment explanation
Indices: 62804359--62804496 Score: 217
Period size: 40 Copynumber: 3.5 Consensus size: 40
62804349 AAACCAAGTA
* * *
62804359 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAACTG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
62804398 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
62804438 CCTTCGAGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
62804478 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
62804497 TTATCATCCG
Statistics
Matches: 92, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
39 14 0.15
40 78 0.85
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:62812338 original size:40 final size:40
Alignment explanation
Indices: 62812268--62812405 Score: 217
Period size: 40 Copynumber: 3.5 Consensus size: 40
62812258 AAACCAAGTA
* * *
62812268 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAACTG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
62812307 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
62812347 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
62812387 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
62812406 TTATCATCCG
Statistics
Matches: 93, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
39 14 0.15
40 79 0.85
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:62815330 original size:43 final size:45
Alignment explanation
Indices: 62815281--62815406 Score: 152
Period size: 43 Copynumber: 2.9 Consensus size: 45
62815271 GATTACCGAG
* *
62815281 ATGTGATTACCTGTAAGACCATGTTTGGGACATTGGCATTG-TAT
1 ATGTGATTACGTGTAAGACCATGTTTGGGACATTGGCATCGTTAT
* * * *
62815325 -TGTGATTACGTGTAAGACCATGTCTGGGATAATGGTATCGTTAT
1 ATGTGATTACGTGTAAGACCATGTTTGGGACATTGGCATCGTTAT
* *
62815369 ATG-G-TTTCGTGTAAGACCTTGTTTGGGACATTGGCATC
1 ATGTGATTACGTGTAAGACCATGTTTGGGACATTGGCATC
62815407 AACAAGTGAT
Statistics
Matches: 68, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
43 62 0.91
44 4 0.06
45 2 0.03
ACGTcount: A:0.23, C:0.13, G:0.27, T:0.37
Consensus pattern (45 bp):
ATGTGATTACGTGTAAGACCATGTTTGGGACATTGGCATCGTTAT
Found at i:62817809 original size:26 final size:26
Alignment explanation
Indices: 62817771--62817824 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
62817761 CATTTATTGG
* *
62817771 TATCAGAGATACGGTTTAGTCAATTT
1 TATCAGAGATACGATTTAATCAATTT
* *
62817797 TATCAGAGCTACGATTTAATCGATTT
1 TATCAGAGATACGATTTAATCAATTT
62817823 TA
1 TA
62817825 GGACTAACGT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.13, G:0.17, T:0.39
Consensus pattern (26 bp):
TATCAGAGATACGATTTAATCAATTT
Found at i:62831963 original size:73 final size:73
Alignment explanation
Indices: 62831872--62832013 Score: 275
Period size: 73 Copynumber: 1.9 Consensus size: 73
62831862 ATCACAATGG
62831872 GATTTTCAGCAGAGGTCTTGAAAGATCTAGTCCTTTTGCGAGATGTAGACATTTTTCTCGAAGAA
1 GATTTTCAGCAGAGGTCTTGAAAGATCTAGTCCTTTTGCGAGATGTAGACATTTTTCTCGAAGAA
62831937 TAAGTTGT
66 TAAGTTGT
*
62831945 GATTTTCAGCAGAGGTCTTGGAAGATCTAGTCCTTTTGCGAGATGTAGACATTTTTCTCGAAGAA
1 GATTTTCAGCAGAGGTCTTGAAAGATCTAGTCCTTTTGCGAGATGTAGACATTTTTCTCGAAGAA
62832010 TAAG
66 TAAG
62832014 AAAAAAATTG
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
73 68 1.00
ACGTcount: A:0.27, C:0.14, G:0.24, T:0.35
Consensus pattern (73 bp):
GATTTTCAGCAGAGGTCTTGAAAGATCTAGTCCTTTTGCGAGATGTAGACATTTTTCTCGAAGAA
TAAGTTGT
Found at i:62840748 original size:49 final size:49
Alignment explanation
Indices: 62840691--62840921 Score: 277
Period size: 49 Copynumber: 4.7 Consensus size: 49
62840681 CTAGTACGCA
* *
62840691 TAGTAGCCTGTACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACG
* * ** * *
62840740 TAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGAC-CAATTATCCGGTACACG
* * * *
62840790 TAGTAG-CTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCCG
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-CCAA-TTATCCGGTAC-ACG
* *
62840841 -AGTAGCCTGCACTTAGTACTATACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACG
*
62840889 TAGTAGCCTGCACTTAGTACTATACATGTGACC
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC
62840922 TCGCAATAGA
Statistics
Matches: 155, Mismatches: 21, Indels: 12
0.82 0.11 0.06
Matches are distributed among these distances:
48 2 0.01
49 96 0.62
50 34 0.22
51 23 0.15
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACG
Found at i:62840845 original size:100 final size:98
Alignment explanation
Indices: 62840691--62840921 Score: 277
Period size: 100 Copynumber: 2.3 Consensus size: 98
62840681 CTAGTACGCA
* *
62840691 TAGTAGCCTGTACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
* * *
62840756 GTACTACACACGTGACTTAACCATCTGATACACG
66 GTACTACACACGCGAC-CAACCATCCGATACACG
* * * *
62840790 TAGTAG-CTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCCG-AGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-CCAA-TTATCCGGTAC-ACGTAGTAGCCTGCAC
* * ** *
62840853 TTAGTACTATACATGCGACCAATTATCCGGTACACG
63 TTAGTACTACACACGCGACCAACCATCCGATACACG
*
62840889 TAGTAGCCTGCACTTAGTACTATACATGTGACC
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC
62840922 TCGCAATAGA
Statistics
Matches: 111, Mismatches: 17, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
98 21 0.19
99 28 0.25
100 60 0.54
101 2 0.02
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (98 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
GTACTACACACGCGACCAACCATCCGATACACG
Found at i:62845504 original size:49 final size:49
Alignment explanation
Indices: 62845451--62845681 Score: 243
Period size: 49 Copynumber: 4.7 Consensus size: 49
62845441 CTAGTACGCA
* *
62845451 TAGTAGCCTGTACTTAGTACTACACATGCGACCAATTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCTGGTACACG
* * * ** *
62845500 TAGTAGCCTGCACTTAATACTACACACGTGACTTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGAC-CAATTATCTGGTACACG
* * * * *
62845550 CAGTAG-TTGCACTTAGTACTACACACGTGATCGAAGTTAT-TGGGTACGCAG
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-CCAA-TTATCT-GGTACAC-G
* * *
62845601 -AGTAGCCTGCACTTAGTACTATACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCTGGTACACG
*
62845649 TAGTAGCCTGCACTTAGTACTACGCATGTGACC
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC
62845682 TCACAATAGA
Statistics
Matches: 148, Mismatches: 26, Indels: 16
0.78 0.14 0.08
Matches are distributed among these distances:
48 1 0.01
49 92 0.62
50 34 0.23
51 21 0.14
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCTGGTACACG
Found at i:62845661 original size:100 final size:99
Alignment explanation
Indices: 62845451--62845671 Score: 234
Period size: 100 Copynumber: 2.2 Consensus size: 99
62845441 CTAGTACGCA
* *
62845451 TAGTAGCCTGTACTTAGTACTACACATGCGACCAATTATCTGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCTGGTACACGTAGTAGCCTGCACTTA
* * *
62845516 ATACTACACACGTGACTTAACCATCTGATACACG
66 ATACTACACACGCGACTCAACCATCCGATACACG
* * * * *
62845550 CAGTAG-TTGCACTTAGTACTACACACGTGATCGAAGTTAT-TGGGTACGCAG-AGTAGCCTGCA
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCT-GGTACAC-GTAGTAGCCTGCA
* * * ** *
62845612 CTTAGTACTATACATGCGAC-CAATTATCCGGTACACG
62 CTTAATACTACACACGCGACTCAACCATCCGATACACG
62845649 TAGTAGCCTGCACTTAGTACTAC
1 TAGTAGCCTGCACTTAGTACTAC
62845672 GCATGTGACC
Statistics
Matches: 99, Mismatches: 18, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
98 20 0.20
99 26 0.26
100 52 0.53
101 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCTGGTACACGTAGTAGCCTGCACTTA
ATACTACACACGCGACTCAACCATCCGATACACG
Found at i:62850778 original size:16 final size:16
Alignment explanation
Indices: 62850757--62850797 Score: 73
Period size: 16 Copynumber: 2.6 Consensus size: 16
62850747 GTAGATCGAC
*
62850757 AAAAGCTGAAATGTCG
1 AAAAGCCGAAATGTCG
62850773 AAAAGCCGAAATGTCG
1 AAAAGCCGAAATGTCG
62850789 AAAAGCCGA
1 AAAAGCCGA
62850798 TAGTTTAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.46, C:0.17, G:0.24, T:0.12
Consensus pattern (16 bp):
AAAAGCCGAAATGTCG
Found at i:62851042 original size:28 final size:29
Alignment explanation
Indices: 62851011--62851157 Score: 149
Period size: 29 Copynumber: 5.2 Consensus size: 29
62851001 GTGAGCATGA
* *
62851011 ATAT-AATGTGATTTGGGCCAAATGGGCC
1 ATATGAATGTGAATTGGGCCTAATGGGCC
*
62851039 ATAT-AA-ATGATATTGGGCCTAATGGGCC
1 ATATGAATGTGA-ATTGGGCCTAATGGGCC
* *
62851067 ATATGAATGTGAATTGGGCTTGATGGGCC
1 ATATGAATGTGAATTGGGCCTAATGGGCC
* **
62851096 ATATGAACGTGAATTGGGCCGGATGGGCC
1 ATATGAATGTGAATTGGGCCTAATGGGCC
* ** *
62851125 ATATAAATAAG-ATTGGGCCTAGTGGGCC
1 ATATGAATGTGAATTGGGCCTAATGGGCC
62851153 ATATG
1 ATATG
62851158 CATATATGTA
Statistics
Matches: 99, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
27 3 0.03
28 43 0.43
29 50 0.51
30 3 0.03
ACGTcount: A:0.29, C:0.14, G:0.31, T:0.27
Consensus pattern (29 bp):
ATATGAATGTGAATTGGGCCTAATGGGCC
Found at i:62858881 original size:29 final size:29
Alignment explanation
Indices: 62858791--62858942 Score: 127
Period size: 29 Copynumber: 5.3 Consensus size: 29
62858781 GTGAGCATGA
* *
62858791 ATAT-AATGTGATTTGGGCCGGATGGGCC
1 ATATGAATGTGAATTGGGCCTGATGGGCC
* *
62858819 ATAT-ATATG-GGATTGGGCCTAATAGGG-C
1 ATATGA-ATGTGAATTGGGCCTGAT-GGGCC
62858847 ATATGAATGTGAATTGGGCCTGATGGGCC
1 ATATGAATGTGAATTGGGCCTGATGGGCC
* ** * *
62858876 ACATGAACCTGAATTGAGCCGGATGGGCC
1 ATATGAATGTGAATTGGGCCTGATGGGCC
* *
62858905 ATATAAATGAG-ATTGGGCCT-AGTGGGCC
1 ATATGAATGTGAATTGGGCCTGA-TGGGCC
*
62858933 ATATGCATGT
1 ATATGAATGT
62858943 ATGTAGGGGT
Statistics
Matches: 97, Mismatches: 21, Indels: 12
0.75 0.16 0.09
Matches are distributed among these distances:
27 1 0.01
28 46 0.47
29 50 0.52
ACGTcount: A:0.26, C:0.15, G:0.32, T:0.26
Consensus pattern (29 bp):
ATATGAATGTGAATTGGGCCTGATGGGCC
Found at i:62861367 original size:17 final size:17
Alignment explanation
Indices: 62861345--62861378 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
62861335 ACACGGGAAA
62861345 ATAAAGCTTAGTAAGCT
1 ATAAAGCTTAGTAAGCT
62861362 ATAAAGCTTAGTAAGCT
1 ATAAAGCTTAGTAAGCT
62861379 TGTATACAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.29
Consensus pattern (17 bp):
ATAAAGCTTAGTAAGCT
Found at i:62863763 original size:16 final size:18
Alignment explanation
Indices: 62863728--62863764 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
62863718 AGTGGTCCTT
*
62863728 ATGCAATTTCTAATCTAA
1 ATGCAATTTCTAACCTAA
62863746 ATGCAATTT-T-ACCTAA
1 ATGCAATTTCTAACCTAA
62863762 ATG
1 ATG
62863765 TATGAATGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 8 0.44
17 1 0.06
18 9 0.50
ACGTcount: A:0.38, C:0.16, G:0.08, T:0.38
Consensus pattern (18 bp):
ATGCAATTTCTAACCTAA
Found at i:62865210 original size:19 final size:17
Alignment explanation
Indices: 62865177--62865223 Score: 58
Period size: 19 Copynumber: 2.6 Consensus size: 17
62865167 ATTTCATGTC
62865177 TAAAATTACTATTTAAG
1 TAAAATTACTATTTAAG
*
62865194 TAAAATTCACTTATTTAAA
1 TAAAATT-AC-TATTTAAG
62865213 TAATAATTACT
1 TAA-AATTACT
62865224 CGAGATAAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
17 7 0.27
18 3 0.12
19 12 0.46
20 4 0.15
ACGTcount: A:0.47, C:0.09, G:0.02, T:0.43
Consensus pattern (17 bp):
TAAAATTACTATTTAAG
Found at i:62865633 original size:24 final size:24
Alignment explanation
Indices: 62865605--62865665 Score: 106
Period size: 24 Copynumber: 2.6 Consensus size: 24
62865595 GGCATGATTA
62865605 AACTAATAATTCAAGCAAAAAGTT
1 AACTAATAATTCAAGCAAAAAGTT
62865629 AACTAATAATTCAAGCAAAAAGTT
1 AACTAATAATTCAAGCAAAAAGTT
*
62865653 AAGTAA-AATTCAA
1 AACTAATAATTCAA
62865666 TGAAACAGTA
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
23 7 0.19
24 29 0.81
ACGTcount: A:0.56, C:0.11, G:0.08, T:0.25
Consensus pattern (24 bp):
AACTAATAATTCAAGCAAAAAGTT
Found at i:62869090 original size:45 final size:45
Alignment explanation
Indices: 62869034--62869124 Score: 155
Period size: 45 Copynumber: 2.0 Consensus size: 45
62869024 GAACTATGTG
*
62869034 ATCTAAACTCATTGAGTTGTGGTTTGAGTTCATGATATATGTGAC
1 ATCTAAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTGAC
* *
62869079 ATCTGAACTCATTGAGTTGTGGTCTGAGTTCATGATGTATGTGAC
1 ATCTAAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTGAC
62869124 A
1 A
62869125 CATGTTTTGG
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.25, C:0.12, G:0.24, T:0.38
Consensus pattern (45 bp):
ATCTAAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTGAC
Found at i:62869111 original size:21 final size:21
Alignment explanation
Indices: 62869042--62869111 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
62869032 TGATCTAAAC
*
62869042 TCATTGAGTTGTGGTTTGAGT
1 TCATTGAGTTGTGGTCTGAGT
* * **
62869063 TCA-TGATATATGTGACATCTGAAC
1 TCATTGA-GT-TGTG--GTCTGAGT
62869087 TCATTGAGTTGTGGTCTGAGT
1 TCATTGAGTTGTGGTCTGAGT
62869108 TCAT
1 TCAT
62869112 GATGTATGTG
Statistics
Matches: 35, Mismatches: 9, Indels: 10
0.65 0.17 0.19
Matches are distributed among these distances:
20 3 0.09
21 13 0.37
22 4 0.11
23 4 0.11
24 8 0.23
25 3 0.09
ACGTcount: A:0.21, C:0.11, G:0.26, T:0.41
Consensus pattern (21 bp):
TCATTGAGTTGTGGTCTGAGT
Found at i:62872236 original size:35 final size:35
Alignment explanation
Indices: 62872196--62872267 Score: 135
Period size: 35 Copynumber: 2.1 Consensus size: 35
62872186 TCCCTACCGA
62872196 TTTGCTCCTTAGGTGTGAGATTTTGGTAAGAGTTC
1 TTTGCTCCTTAGGTGTGAGATTTTGGTAAGAGTTC
*
62872231 TTTGCTCCTTAGGTGTGAGATTTTGGTAAGATTTC
1 TTTGCTCCTTAGGTGTGAGATTTTGGTAAGAGTTC
62872266 TT
1 TT
62872268 CACTTCGATA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.17, C:0.11, G:0.26, T:0.46
Consensus pattern (35 bp):
TTTGCTCCTTAGGTGTGAGATTTTGGTAAGAGTTC
Found at i:62872472 original size:16 final size:16
Alignment explanation
Indices: 62872451--62872483 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
62872441 CGGTAAATCC
62872451 CGAAATGCCGAAAAGT
1 CGAAATGCCGAAAAGT
62872467 CGAAATGCCGAAAAGT
1 CGAAATGCCGAAAAGT
62872483 C
1 C
62872484 AAAAGTTTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.42, C:0.21, G:0.24, T:0.12
Consensus pattern (16 bp):
CGAAATGCCGAAAAGT
Found at i:62879618 original size:21 final size:21
Alignment explanation
Indices: 62879594--62879635 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
62879584 TCATCAGATC
*
62879594 TACACCTTGAGGCATCGGGGG
1 TACACCTTGAGGAATCGGGGG
**
62879615 TACAGGTTGAGGAATCGGGGG
1 TACACCTTGAGGAATCGGGGG
62879636 AGGTGGGGGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.21, C:0.17, G:0.43, T:0.19
Consensus pattern (21 bp):
TACACCTTGAGGAATCGGGGG
Found at i:62883904 original size:29 final size:29
Alignment explanation
Indices: 62883862--62883971 Score: 186
Period size: 29 Copynumber: 3.8 Consensus size: 29
62883852 GCATGTATAT
62883862 GAATGTGATTTGGGCCTAATGGGCCATAC
1 GAATGTGATTTGGGCCTAATGGGCCATAC
62883891 GAATGTGATTTGGGCCTAATGGGCCATAC
1 GAATGTGATTTGGGCCTAATGGGCCATAC
*
62883920 GAATGTGATTTGGGCCTAATGGGCCATAT
1 GAATGTGATTTGGGCCTAATGGGCCATAC
* *
62883949 GAATGAGA-TTGGGCCTAGTGGGC
1 GAATGTGATTTGGGCCTAATGGGC
62883972 GATATGCATG
Statistics
Matches: 78, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
28 14 0.18
29 64 0.82
ACGTcount: A:0.24, C:0.15, G:0.34, T:0.27
Consensus pattern (29 bp):
GAATGTGATTTGGGCCTAATGGGCCATAC
Found at i:62886025 original size:35 final size:37
Alignment explanation
Indices: 62885934--62886111 Score: 283
Period size: 35 Copynumber: 4.9 Consensus size: 37
62885924 GCTCAGACGA
* * * *
62885934 AATCTCCACATGAAGTTATCGGGTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
62885971 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
62886008 AATCT-C-CACGTAGTCATCGGGTCTTACCTGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
62886043 AATCTCCACACGTAGTCATC-GGTCTTA-CCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
62886078 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
62886112 ATATATTTCC
Statistics
Matches: 131, Mismatches: 6, Indels: 8
0.90 0.04 0.06
Matches are distributed among these distances:
35 60 0.46
36 16 0.12
37 55 0.42
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:62886032 original size:72 final size:72
Alignment explanation
Indices: 62885934--62886111 Score: 279
Period size: 72 Copynumber: 2.5 Consensus size: 72
62885924 GCTCAGACGA
* * *
62885934 AATCTCCACATGAAGTTATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTTA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATC-GGTCTTA
62885999 CCCGGACAT
65 -CCGGACAT
* *
62886008 AATCT-C-CACGTAGTCATCGGGTCTTACCTGGACATAATCTCCACACGTAGTCATCGGTCTTAC
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGTCTTAC
62886071 CGGACAT
66 CGGACAT
62886078 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
62886112 ATATATTTCC
Statistics
Matches: 96, Mismatches: 6, Indels: 6
0.89 0.06 0.06
Matches are distributed among these distances:
70 13 0.14
71 8 0.08
72 69 0.72
73 1 0.01
74 5 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (72 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGTCTTAC
CGGACAT
Found at i:62886392 original size:93 final size:90
Alignment explanation
Indices: 62886271--62886652 Score: 410
Period size: 93 Copynumber: 4.1 Consensus size: 90
62886261 CGTACATATC
* * * * * *
62886271 TCACATTAG-CATTTGGCTTTACCACATATCCATCTCATACACGTT-TCGCATTAGCCATTCGGC
1 TCACATTGGCCATTCGGCCTTATCACATATCCATCT--T-CACATTATCACATT-GCCATTCGGC
* * **
62886334 CTTACCACATATATTCATGTTCACATTCA
62 CTTATCACACATACGCATGTTCACATTCA
* * *
62886363 TCACATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
1 TCACATTGGCCATTCGGCCTTA--TCACATATCCATCTTCACATT-ATCACATT-GCCATTCGGC
62886428 CTTATCACACATACGCA-GTTCACATTCA
62 CTTATCACACATACGCATGTTCACATTCA
* * *
62886456 TCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCATTCGGCC
1 TCACATTGGCCATTCGGCCTTATCACATAT-C-CATCTTCACATT-ATCACATTGCCATTCGGCC
62886521 TTATCACACATACGCATGTTCACATTCA
63 TTATCACACATACGCATGTTCACATTCA
**
62886549 TCACATTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCATCACATTGGCCATT
1 TCACATTGGCCATTCGGCCTTATCA--CATATCCAT-C---TTCACATT-ATCACATT-GCCATT
62886614 CGGCCTTATCACACATACGCATGTTCACATTCA
58 CGGCCTTATCACACATACGCATGTTCACATTCA
62886647 TCACAT
1 TCACAT
62886653 AAAATCCTAA
Statistics
Matches: 252, Mismatches: 23, Indels: 24
0.84 0.08 0.08
Matches are distributed among these distances:
91 6 0.02
92 39 0.15
93 103 0.41
94 29 0.12
95 14 0.06
97 17 0.07
98 44 0.17
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.32
Consensus pattern (90 bp):
TCACATTGGCCATTCGGCCTTATCACATATCCATCTTCACATTATCACATTGCCATTCGGCCTTA
TCACACATACGCATGTTCACATTCA
Found at i:62886466 original size:46 final size:47
Alignment explanation
Indices: 62886319--62886652 Score: 510
Period size: 47 Copynumber: 7.1 Consensus size: 47
62886309 ACACGTTTCG
* * * **
62886319 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * *
62886366 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
62886413 CATTGGCCATTCGGCCTTATCACACATACGCA-GTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
62886459 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
62886506 CATTGG-CATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* ** *
62886552 CATTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C--ACATACGCATGTTCACATTCATCA
62886603 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
62886650 CAT
1 CAT
62886653 AAAATCCTAA
Statistics
Matches: 266, Mismatches: 15, Indels: 12
0.91 0.05 0.04
Matches are distributed among these distances:
46 92 0.35
47 130 0.49
49 2 0.01
51 42 0.16
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.31
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:62886480 original size:22 final size:22
Alignment explanation
Indices: 62886409--62886482 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
62886399 GTTCACATTC
62886409 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * * *
62886431 ATCACACAT-ACGCAGTTC-ACATT
1 ATCACA-TTGGC-CA-TTCGGCCTT
62886454 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
62886477 ATCACA
1 ATCACA
62886483 CATACGCATG
Statistics
Matches: 38, Mismatches: 8, Indels: 12
0.66 0.14 0.21
Matches are distributed among these distances:
22 16 0.42
23 12 0.32
24 10 0.26
ACGTcount: A:0.26, C:0.32, G:0.14, T:0.28
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:62886514 original size:23 final size:23
Alignment explanation
Indices: 62886488--62886558 Score: 58
Period size: 23 Copynumber: 3.1 Consensus size: 23
62886478 TCACACATAC
62886488 GCATGTTCACATTCATCACATTG
1 GCATGTTCACATTCATCACATTG
* * **
62886511 GCA--TTCGGCCTT-ATCACACATAC
1 GCATGTTC-ACATTCAT--CACATTG
62886534 GCATGTTCACATTCATCACATTG
1 GCATGTTCACATTCATCACATTG
62886557 GC
1 GC
62886559 CATTCGGCCT
Statistics
Matches: 34, Mismatches: 8, Indels: 12
0.63 0.15 0.22
Matches are distributed among these distances:
21 5 0.15
22 3 0.09
23 18 0.53
24 3 0.09
25 5 0.15
ACGTcount: A:0.25, C:0.30, G:0.14, T:0.31
Consensus pattern (23 bp):
GCATGTTCACATTCATCACATTG
Found at i:62888978 original size:84 final size:85
Alignment explanation
Indices: 62888837--62889014 Score: 340
Period size: 84 Copynumber: 2.1 Consensus size: 85
62888827 TATTTTATTG
*
62888837 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
62888902 TAGCCATAA-ATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
62888921 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
62888986 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
62889006 CCCATGCTC
1 CCCATGCTC
62889015 ATGGCCGCCA
Statistics
Matches: 92, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
84 73 0.79
85 19 0.21
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.38
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:62890533 original size:57 final size:58
Alignment explanation
Indices: 62890461--62890569 Score: 166
Period size: 57 Copynumber: 1.9 Consensus size: 58
62890451 GCCCACTGAT
* *
62890461 CGATCTCGCACACATAGTGCTTGGTT-GAAGAACTCGCACACACAGTGCCTCAATTAC
1 CGATCTCGCACACATAGTGCTCGGTTAAAAGAACTCGCACACACAGTGCCTCAATTAC
* * *
62890518 CGATTTCGCACACATAGTGCTCGGTTAAAAGAATTTGCACACACAGTGCCTC
1 CGATCTCGCACACATAGTGCTCGGTTAAAAGAACTCGCACACACAGTGCCTC
62890570 TAATCATTCG
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
57 24 0.52
58 22 0.48
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.24
Consensus pattern (58 bp):
CGATCTCGCACACATAGTGCTCGGTTAAAAGAACTCGCACACACAGTGCCTCAATTAC
Found at i:62890922 original size:40 final size:40
Alignment explanation
Indices: 62890781--62891049 Score: 436
Period size: 40 Copynumber: 6.8 Consensus size: 40
62890771 CCAGCATGAT
* * *
62890781 TGCTCTTC-GGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
62890820 TGCTCTTCGGG-TTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
62890859 TGCTCCTC-GGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
62890898 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
62890938 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
62890978 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
62891018 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
62891050 CTCAATTCTC
Statistics
Matches: 214, Mismatches: 13, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
38 2 0.01
39 71 0.33
40 141 0.66
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:62892376 original size:37 final size:37
Alignment explanation
Indices: 62892318--62892497 Score: 310
Period size: 37 Copynumber: 4.9 Consensus size: 37
62892308 GCTCAGACGA
* * * *
62892318 AATCTCCACATGAAGTTATCGGGTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
62892355 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
62892392 AATCTCCACACGTAGTCATC-GGTCTTA-CCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
62892427 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
62892464 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
62892498 ATATATTTCC
Statistics
Matches: 137, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
35 28 0.20
36 14 0.10
37 95 0.69
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:62892437 original size:72 final size:73
Alignment explanation
Indices: 62892318--62892493 Score: 300
Period size: 72 Copynumber: 2.4 Consensus size: 73
62892308 GCTCAGACGA
* * *
62892318 AATCTCCACATGAAGTTATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTTA
1 AATCTCCACACGTAGTCATCGGGTCTTA-CCGGACAAAATCTCCACACGTAGTCATCGGGTCTTA
62892383 CCCGGACAT
65 CCCGGACAT
*
62892392 AATCTCCACACGTAGTCATC-GGTCTTACCGGACATAATCTCCACACGTAGTCATCGGGTCTTAC
1 AATCTCCACACGTAGTCATCGGGTCTTACCGGACAAAATCTCCACACGTAGTCATCGGGTCTTAC
62892456 CCGGACAT
66 CCGGACAT
62892464 AATCTCCACACGTAGTCATCGGGTCTTACC
1 AATCTCCACACGTAGTCATCGGGTCTTACC
62892494 CGGAATATAT
Statistics
Matches: 97, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
72 64 0.66
73 16 0.16
74 17 0.18
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.25
Consensus pattern (73 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCGGACAAAATCTCCACACGTAGTCATCGGGTCTTAC
CCGGACAT
Found at i:62892768 original size:47 final size:47
Alignment explanation
Indices: 62892706--62893039 Score: 544
Period size: 47 Copynumber: 7.1 Consensus size: 47
62892696 ACACGTTTCG
* * * **
62892706 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* *
62892753 CATTGGCCATTCGGCCTTATCTCACATACGCATGTTCAGATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
62892800 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
62892847 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
62892894 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
***
62892941 CATTGGCCATTCGGCCTTATCACACATATATATACGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCAT---GTTCACATTCATCA
62892991 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACA-TCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
62893037 CAT
1 CAT
62893040 AAAATCCTAA
Statistics
Matches: 269, Mismatches: 15, Indels: 7
0.92 0.05 0.02
Matches are distributed among these distances:
46 9 0.03
47 216 0.80
50 44 0.16
ACGTcount: A:0.26, C:0.31, G:0.12, T:0.31
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:62895355 original size:85 final size:85
Alignment explanation
Indices: 62895226--62895404 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
62895216 TATTTTATTG
*
62895226 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
62895291 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
62895311 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
62895376 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
62895396 CCCATGCTC
1 CCCATGCTC
62895405 ATGGCCGGCC
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Done.