Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 183 of 295
Found at i:62896926 original size:57 final size:58
Alignment explanation
Indices: 62896854--62896962 Score: 166
Period size: 57 Copynumber: 1.9 Consensus size: 58
62896844 GCCCACTGAT
* *
62896854 CGATCTCGCACACATAGTGCTTGGTT-GAAGAACTCGCACACACAGTGCCTCAATTAC
1 CGATCTCGCACACATAGTGCTCGGTTAAAAGAACTCGCACACACAGTGCCTCAATTAC
* * *
62896911 CGATTTCGCACACATAGTGCTCGGTTAAAAGAATTTGCACACACAGTGCCTC
1 CGATCTCGCACACATAGTGCTCGGTTAAAAGAACTCGCACACACAGTGCCTC
62896963 TAATCATTCG
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
57 24 0.52
58 22 0.48
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.24
Consensus pattern (58 bp):
CGATCTCGCACACATAGTGCTCGGTTAAAAGAACTCGCACACACAGTGCCTCAATTAC
Found at i:62897206 original size:40 final size:40
Alignment explanation
Indices: 62897174--62897445 Score: 391
Period size: 40 Copynumber: 6.8 Consensus size: 40
62897164 CCAGCATGAT
* * * *
62897174 TGCTCTTCAGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
** * ** *
62897214 TGCTCTTCGGGGTTTAGCACATATATATCACTATCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
62897254 TGCTCCTCGGGACTTAGCCTGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
62897294 TGCTCCTCGAGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
62897334 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
62897374 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
62897414 TGTTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
62897446 CTCAATTCTC
Statistics
Matches: 205, Mismatches: 27, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 205 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:62899810 original size:85 final size:85
Alignment explanation
Indices: 62899686--62899856 Score: 324
Period size: 85 Copynumber: 2.0 Consensus size: 85
62899676 TGCCCATACC
*
62899686 CTTTATTTTATTAATCCTTACATAATGCACTACCTCAACATGTTTATGACATGTTTTTAGCCATA
1 CTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTTAGCCATA
*
62899751 ACATCTTGTCCACCCATGCT
66 ACATCTTATCCACCCATGCT
62899771 CTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTTAGCCATA
1 CTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTTAGCCATA
62899836 ACATCTTATCCACCCATGCT
66 ACATCTTATCCACCCATGCT
62899856 C
1 C
62899857 ATGGCCGGCC
Statistics
Matches: 84, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 84 1.00
ACGTcount: A:0.27, C:0.26, G:0.08, T:0.39
Consensus pattern (85 bp):
CTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTTAGCCATA
ACATCTTATCCACCCATGCT
Found at i:62901490 original size:14 final size:15
Alignment explanation
Indices: 62901473--62901501 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
62901463 TCACGAAAAT
62901473 TTCACATAT-ATAAA
1 TTCACATATAATAAA
62901487 TTCACATATAATAAA
1 TTCACATATAATAAA
62901502 CATAGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.14, G:0.00, T:0.34
Consensus pattern (15 bp):
TTCACATATAATAAA
Found at i:62903886 original size:14 final size:14
Alignment explanation
Indices: 62903867--62903900 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
62903857 TCCCGAAGTG
* *
62903867 GATGATATGATTAT
1 GATGATATCACTAT
62903881 GATGATATCACTAT
1 GATGATATCACTAT
62903895 GATGAT
1 GATGAT
62903901 GAAAGTCGTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.35, C:0.06, G:0.21, T:0.38
Consensus pattern (14 bp):
GATGATATCACTAT
Found at i:62904785 original size:15 final size:15
Alignment explanation
Indices: 62904761--62904808 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
62904751 TATGATATCG
62904761 TATCTTGGATTTCTC
1 TATCTTGGATTTCTC
* *
62904776 TATTTTGGATTCCTC
1 TATCTTGGATTTCTC
*
62904791 TATCTTGGTTTTCT-
1 TATCTTGGATTTCTC
62904805 TATC
1 TATC
62904809 ATCTTTATTC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
14 4 0.14
15 24 0.86
ACGTcount: A:0.12, C:0.19, G:0.12, T:0.56
Consensus pattern (15 bp):
TATCTTGGATTTCTC
Found at i:62905102 original size:62 final size:62
Alignment explanation
Indices: 62905026--62905150 Score: 214
Period size: 62 Copynumber: 2.0 Consensus size: 62
62905016 TTTTCTCGAA
* * *
62905026 TAAGTTAATTTAAGGTTAATGTCTTCAATCGGGATATTTTTGTTATTTTGAGCTGAAGTTAT
1 TAAGTTAATTTAAGGTTAATGTCTTCAATCGAGATATTCTTGTTATTTTGAACTGAAGTTAT
*
62905088 TAAGTTAATTTAAGGTTAATGTCTTCAATCGAGATATTCTTGTTATTTTGAATTGAAGTTAT
1 TAAGTTAATTTAAGGTTAATGTCTTCAATCGAGATATTCTTGTTATTTTGAACTGAAGTTAT
62905150 T
1 T
62905151 TTTGAGCTGA
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 59 1.00
ACGTcount: A:0.29, C:0.06, G:0.18, T:0.47
Consensus pattern (62 bp):
TAAGTTAATTTAAGGTTAATGTCTTCAATCGAGATATTCTTGTTATTTTGAACTGAAGTTAT
Found at i:62908590 original size:44 final size:42
Alignment explanation
Indices: 62908525--62908634 Score: 116
Period size: 44 Copynumber: 2.6 Consensus size: 42
62908515 ATATGTGTTA
* * * *
62908525 TCGTGTAAGACCACGTATGGGACGTTGGCATCG-ACTTCT-ATTT
1 TCGTGTAAGACCATGTCTGGGACATCGGCATCGTA--TCTGA-TT
*
62908568 TACGTGTAAGACAATGTCTGGGACATCGGCATCGTATCTGATT
1 T-CGTGTAAGACCATGTCTGGGACATCGGCATCGTATCTGATT
*
62908611 TCGTGTAAGACCCTGTCTGGGACA
1 TCGTGTAAGACCATGTCTGGGACA
62908635 GTGATATCGA
Statistics
Matches: 57, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
42 21 0.37
43 7 0.12
44 28 0.49
45 1 0.02
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (42 bp):
TCGTGTAAGACCATGTCTGGGACATCGGCATCGTATCTGATT
Found at i:62911069 original size:28 final size:28
Alignment explanation
Indices: 62911037--62911139 Score: 161
Period size: 28 Copynumber: 3.6 Consensus size: 28
62911027 ATAGTAAGTC
*
62911037 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
62911065 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGC-TATATAATCAAACT
*
62911094 CGCACATTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
62911122 TGCACACTTAGTGCTATA
1 CGCACACTTAGTGCTATA
62911140 CTTCATACGG
Statistics
Matches: 68, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
28 42 0.62
29 26 0.38
ACGTcount: A:0.34, C:0.23, G:0.12, T:0.31
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:62917228 original size:28 final size:28
Alignment explanation
Indices: 62917196--62917323 Score: 175
Period size: 29 Copynumber: 4.5 Consensus size: 28
62917186 ATAGTAAGTC
*
62917196 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
62917224 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGC-TATATAATCAAACT
62917253 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* ** * *
62917281 TGCACACTTAGTGCTATGCAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
62917310 CGCACACTTAGTGC
1 CGCACACTTAGTGC
62917324 CAATCTCATG
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 44 0.49
29 45 0.51
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:62917286 original size:57 final size:57
Alignment explanation
Indices: 62917195--62917323 Score: 188
Period size: 57 Copynumber: 2.3 Consensus size: 57
62917185 TATAGTAAGT
*
62917195 CCGCACACTTAGTGTTATATAATCAAACTCGCACACTTAGTGCT-TACATAATCAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACA-AATCAAAC
* * * * *
62917252 TCGCACACTTAGTGCTATATAATCAAACTTGCACACTTAGTGCTATGCAATTTAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
62917309 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
62917324 CAATCTCATG
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (57 bp):
CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
Found at i:62938448 original size:19 final size:19
Alignment explanation
Indices: 62938421--62938459 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
62938411 CCATGACCTA
*
62938421 CTCATCAACCATAATCAAG
1 CTCACCAACCATAATCAAG
*
62938440 CTCACCAACCATTATCAAG
1 CTCACCAACCATAATCAAG
62938459 C
1 C
62938460 CATTTCCAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.38, C:0.36, G:0.05, T:0.21
Consensus pattern (19 bp):
CTCACCAACCATAATCAAG
Found at i:62944201 original size:55 final size:55
Alignment explanation
Indices: 62944011--62944264 Score: 260
Period size: 55 Copynumber: 4.8 Consensus size: 55
62944001 ACATGGGTAC
* * * *
62944011 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCC-T---TT-T-GAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAAA
* * * *
62944060 CTTACCATTGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTAT--CAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAAA
* * * * *
62944113 CTCACCAATGCCATGTCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTATAGAAA
*
62944168 CTTATCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCC-T-TAGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAAA
* *
62944221 CCTTAACAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCT
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCT
62944265 GAAACCTTAA
Statistics
Matches: 175, Mismatches: 19, Indels: 16
0.83 0.09 0.08
Matches are distributed among these distances:
49 37 0.21
50 1 0.01
52 2 0.01
53 51 0.29
54 9 0.05
55 73 0.42
56 2 0.01
ACGTcount: A:0.22, C:0.26, G:0.18, T:0.35
Consensus pattern (55 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAAA
Found at i:62944202 original size:108 final size:110
Alignment explanation
Indices: 62944058--62944258 Score: 307
Period size: 108 Copynumber: 1.8 Consensus size: 110
62944048 ATCCTTTTGA
* * ** *
62944058 AACTTACCATTGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTATCAA-CTCACCAA-
1 AACTTACCAATGCCATGCCTCGACATGGTCTTACATGGTATCCTTGCCTTAGAAACCTCAACAAT
*
62944121 TGCCATGTCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
66 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * *
62944166 AACTTATCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAACCTTAACAAT
1 AACTTACCAATGCCATGCCTCGACATGGTCTTACATGGTATCCTTGCCTTAGAAACCTCAACAAT
62944231 TGCCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
62944259 TATCCTGAAA
Statistics
Matches: 82, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
108 49 0.60
109 6 0.07
110 27 0.33
ACGTcount: A:0.23, C:0.26, G:0.18, T:0.33
Consensus pattern (110 bp):
AACTTACCAATGCCATGCCTCGACATGGTCTTACATGGTATCCTTGCCTTAGAAACCTCAACAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:62957013 original size:48 final size:48
Alignment explanation
Indices: 62956950--62957215 Score: 369
Period size: 48 Copynumber: 5.5 Consensus size: 48
62956940 TGTAACCATA
* *
62956950 TAAGACCATGTCTGGGACATGGCATCGGCATTGTTTTGTGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGACATTGTTATGTGAGCCAGTG
* *
62956998 TAAAACTATGTCTGGGACATGGCATC-AGCATTGTTATGTGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGA-CATTGTTATGTGAGCCAGTG
*
62957046 TAAGACCATGTCTAGGACATGGCAGT-GACATTGTTATGTGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCA-TCGACATTGTTATGTGAGCCAGTG
* * *
62957094 TAAGACCATGTTTGGGATATGGCATCGACATCT-TTATGTGAGCTAGTG
1 TAAGACCATGTCTGGGACATGGCATCGACAT-TGTTATGTGAGCCAGTG
*
62957142 TAAGACCATG-CTTGGGACATGGCATCGACATCGTTATGTGAGCCAGTG
1 TAAGACCATGTC-TGGGACATGGCATCGACATTGTTATGTGAGCCAGTG
* *
62957190 TAATACCATGTCTGGAACATGGCATC
1 TAAGACCATGTCTGGGACATGGCATC
62957216 AGCATGAGGC
Statistics
Matches: 193, Mismatches: 17, Indels: 16
0.85 0.08 0.07
Matches are distributed among these distances:
47 1 0.01
48 188 0.97
49 4 0.02
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.29
Consensus pattern (48 bp):
TAAGACCATGTCTGGGACATGGCATCGACATTGTTATGTGAGCCAGTG
Found at i:62958068 original size:15 final size:16
Alignment explanation
Indices: 62958050--62958079 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
62958040 TATTTTTTAA
62958050 ATTTTCAAT-GAATCT
1 ATTTTCAATAGAATCT
62958065 ATTTTCAATAGAATC
1 ATTTTCAATAGAATC
62958080 AAACGAGAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.37, C:0.13, G:0.07, T:0.43
Consensus pattern (16 bp):
ATTTTCAATAGAATCT
Found at i:62964893 original size:64 final size:64
Alignment explanation
Indices: 62964789--62965008 Score: 205
Period size: 64 Copynumber: 3.4 Consensus size: 64
62964779 TAAGTTTGTG
* * *
62964789 TGTGTACACCATGTAGACAAGAGAGCTATGGGATATATGTAGCTAGGTATCATGGGTGATACTA
1 TGTGTACACCATGTAGACAAGAGAGCTACGAGATAAATGTAGCTAGGTATCATGGGTGATACTA
* * * * *
62964853 TGTGTACACCATGTAGACAAGAGAGCTACGAGATAAATGTAGCTAGGT-TGTATGTGTGGTTCCA
1 TGTGTACACCATGTAGACAAGAGAGCTACGAGATAAATGTAGCTAGGTAT-CATGGGT-GATACT
62964917 A
64 A
* * * * * *
62964918 GTGAAGGACACCATGTAAACAACAGAGCTACGAGATAAA-GTGGCTAGGTCA-CATGGGTGGTAC
1 -TG-TGTACACCATGTAGACAAGAGAGCTACGAGATAAATGTAGCTAGGT-ATCATGGGTGATAC
62964981 TA
63 TA
* * *
62964983 AGTGTTCACCAT-TTGTACAAGAGAGC
1 TGTGTACACCATGTAG-ACAAGAGAGC
62965009 CAAAATTATG
Statistics
Matches: 124, Mismatches: 25, Indels: 15
0.76 0.15 0.09
Matches are distributed among these distances:
62 1 0.01
63 17 0.14
64 51 0.41
65 8 0.06
66 16 0.13
67 31 0.25
ACGTcount: A:0.32, C:0.15, G:0.28, T:0.25
Consensus pattern (64 bp):
TGTGTACACCATGTAGACAAGAGAGCTACGAGATAAATGTAGCTAGGTATCATGGGTGATACTA
Found at i:62968132 original size:46 final size:46
Alignment explanation
Indices: 62968082--62968249 Score: 151
Period size: 46 Copynumber: 3.6 Consensus size: 46
62968072 CCTGTAACCG
* *
62968082 ATGCATGTCCGAGACATGTCTTACACTAACT-TACATCTCGAGGCCA
1 ATGCATGTCCCAGACATGTCTTACACTAACTCT-CATCTCAAGGCCA
* * * * * *
62968128 ATGCATGTCCTAGGCATGTCTTACACTAGCTCTCGTCTCAATGCCG
1 ATGCATGTCCCAGACATGTCTTACACTAACTCTCATCTCAAGGCCA
** * ** *
62968174 ATGTCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCCG
1 ATG-CATGTCCCAGACAT-GTCTTACACTAACTCTCAT-CTCAAGGCCA
*
62968222 ATACATGTCCCAGACATGTCTTACACTA
1 ATGCATGTCCCAGACATGTCTTACACTA
62968250 GCCTACAACA
Statistics
Matches: 101, Mismatches: 17, Indels: 8
0.80 0.13 0.06
Matches are distributed among these distances:
46 50 0.50
47 27 0.27
48 23 0.23
49 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (46 bp):
ATGCATGTCCCAGACATGTCTTACACTAACTCTCATCTCAAGGCCA
Found at i:62982664 original size:30 final size:31
Alignment explanation
Indices: 62982607--62982665 Score: 75
Period size: 30 Copynumber: 1.9 Consensus size: 31
62982597 TAAAATAAAG
* ***
62982607 AACGAGCTAAAAGTAAGCTCGGTTGAGCTCA
1 AACGAGCTAAAAGCAAGCTCAAATGAGCTCA
62982638 AACGAGCTAAAA-CAAGCTCAAATGAGCT
1 AACGAGCTAAAAGCAAGCTCAAATGAGCT
62982666 GAATTGAGCT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
30 12 0.50
31 12 0.50
ACGTcount: A:0.41, C:0.20, G:0.22, T:0.17
Consensus pattern (31 bp):
AACGAGCTAAAAGCAAGCTCAAATGAGCTCA
Found at i:62985614 original size:42 final size:43
Alignment explanation
Indices: 62985568--62985666 Score: 116
Period size: 43 Copynumber: 2.3 Consensus size: 43
62985558 AGACCATTTT
* *
62985568 TGGGACA-TCGGCATCG-TATTTGATTTCGCGTAAGACC-CTGTC
1 TGGGACAGT-GGCATCGATATTTGATTACACGTAAGACCAC-GTC
*
62985610 TGGGACAGTGGCATCGATATTTGATTACATGTAAGACCACGTC
1 TGGGACAGTGGCATCGATATTTGATTACACGTAAGACCACGTC
62985653 TGGGAC-GTTGGCAT
1 TGGGACAG-TGGCAT
62985667 TGTACGAGCT
Statistics
Matches: 50, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
42 15 0.30
43 34 0.68
44 1 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (43 bp):
TGGGACAGTGGCATCGATATTTGATTACACGTAAGACCACGTC
Found at i:62987349 original size:40 final size:40
Alignment explanation
Indices: 62987305--62987492 Score: 290
Period size: 40 Copynumber: 4.7 Consensus size: 40
62987295 GCTACTTGCT
62987305 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
62987345 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
** *
62987385 CAAATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
62987425 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
*
62987464 CAAATGCCTTCGGGACTTAGCCCAGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
62987493 CATCCGAATA
Statistics
Matches: 135, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
38 1 0.01
39 32 0.24
40 101 0.75
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:62992232 original size:27 final size:27
Alignment explanation
Indices: 62992194--62992249 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
62992184 ACCTATTCAA
62992194 GTCAGTAGACTCAACTCGGATTATCTC
1 GTCAGTAGACTCAACTCGGATTATCTC
62992221 GTCAGTAGACTCAACTCGGATTATCTC
1 GTCAGTAGACTCAACTCGGATTATCTC
62992248 GT
1 GT
62992250 TATTTACACA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (27 bp):
GTCAGTAGACTCAACTCGGATTATCTC
Found at i:62995430 original size:40 final size:40
Alignment explanation
Indices: 62995386--62995572 Score: 308
Period size: 40 Copynumber: 4.7 Consensus size: 40
62995376 GCTACTTGCT
62995386 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
62995426 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
62995466 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
62995506 CAAATGCCTTC-GG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
62995544 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
62995573 CATCCGAATA
Statistics
Matches: 138, Mismatches: 5, Indels: 8
0.91 0.03 0.05
Matches are distributed among these distances:
37 1 0.01
38 31 0.22
39 4 0.03
40 101 0.73
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:62995562 original size:118 final size:119
Alignment explanation
Indices: 62995353--62995572 Score: 322
Period size: 118 Copynumber: 1.9 Consensus size: 119
62995343 AAACCAAGTA
* * * *
62995353 CCTTCGGAATTTAGCCGGATATAGCTACTTGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGT
1 CCTTCGGAACTTAGCCGGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
*
62995418 AACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
66 AACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
62995472 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTC-GG-CTTAGCCCGGA-ATT
1 CCTTCGGAACTTAG-CCGGATATAGCT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-T
*
62995533 AGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
63 AGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
62995573 CATCCGAATA
Statistics
Matches: 91, Mismatches: 7, Indels: 7
0.87 0.07 0.07
Matches are distributed among these distances:
117 1 0.01
118 49 0.54
119 15 0.16
120 26 0.29
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (119 bp):
CCTTCGGAACTTAGCCGGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
AACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:62996766 original size:50 final size:49
Alignment explanation
Indices: 62996692--62996795 Score: 163
Period size: 50 Copynumber: 2.1 Consensus size: 49
62996682 AGATTTAAAC
* **
62996692 CATGGGCTAGGTACAACTCAAGCTAACAACTGATTACATGCATGAATCT
1 CATGGGCTAGGTACAACTCAAGCTAACAACTAAAAACATGCATGAATCT
*
62996741 CATGGGACTAGGTAGAACTCAAGCTAACAACTAAAAACATGCATGAATCT
1 CATGGG-CTAGGTACAACTCAAGCTAACAACTAAAAACATGCATGAATCT
62996791 CATGG
1 CATGG
62996796 AACAACATCA
Statistics
Matches: 50, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
49 6 0.12
50 44 0.88
ACGTcount: A:0.38, C:0.21, G:0.19, T:0.22
Consensus pattern (49 bp):
CATGGGCTAGGTACAACTCAAGCTAACAACTAAAAACATGCATGAATCT
Found at i:62997741 original size:13 final size:13
Alignment explanation
Indices: 62997723--62997747 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
62997713 ATGAATGAAT
62997723 GATTTTGGTATGC
1 GATTTTGGTATGC
62997736 GATTTTGGTATG
1 GATTTTGGTATG
62997748 TTTTGGTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.04, G:0.32, T:0.48
Consensus pattern (13 bp):
GATTTTGGTATGC
Found at i:63005743 original size:20 final size:20
Alignment explanation
Indices: 63005716--63005753 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
63005706 TAGCACATTA
63005716 ATAAACATATAAT-TAAATT
1 ATAAACATATAATATAAATT
*
63005735 ATAACACATTTAATATAAA
1 ATAA-ACATATAATATAAA
63005754 CTTAGTTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 4 0.25
20 8 0.50
21 4 0.25
ACGTcount: A:0.58, C:0.08, G:0.00, T:0.34
Consensus pattern (20 bp):
ATAAACATATAATATAAATT
Found at i:63005917 original size:11 final size:10
Alignment explanation
Indices: 63005899--63005957 Score: 64
Period size: 10 Copynumber: 5.8 Consensus size: 10
63005889 ATTAAGTAAT
63005899 TGAGCTGAAA
1 TGAGCTGAAA
63005909 TGAAGCTGAAA
1 TG-AGCTGAAA
*
63005920 TGAGCTCAAA
1 TGAGCTGAAA
*
63005930 CGAGCTGAAA
1 TGAGCTGAAA
* * *
63005940 TAAGCTCAAG
1 TGAGCTGAAA
63005950 TGAGCTGA
1 TGAGCTGA
63005958 CTTTAGCTGA
Statistics
Matches: 39, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
10 29 0.74
11 10 0.26
ACGTcount: A:0.39, C:0.15, G:0.27, T:0.19
Consensus pattern (10 bp):
TGAGCTGAAA
Found at i:63007192 original size:17 final size:16
Alignment explanation
Indices: 63007170--63007201 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
63007160 TTAAGTTTTA
63007170 TAGCTATTAGACACCTT
1 TAGCTATTAGA-ACCTT
63007187 TAGCTATTAGAACCT
1 TAGCTATTAGAACCT
63007202 AACTTTTACA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.31, C:0.22, G:0.12, T:0.34
Consensus pattern (16 bp):
TAGCTATTAGAACCTT
Found at i:63013712 original size:18 final size:18
Alignment explanation
Indices: 63013674--63013708 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
63013664 GGGCCGAAAG
63013674 GGGCCATATGGGCCCAAT
1 GGGCCATATGGGCCCAAT
63013692 GGGCC-TATGGGCCCAAT
1 GGGCCATATGGGCCCAAT
63013709 TGGGTAAGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.71
18 5 0.29
ACGTcount: A:0.20, C:0.29, G:0.34, T:0.17
Consensus pattern (18 bp):
GGGCCATATGGGCCCAAT
Found at i:63013912 original size:27 final size:26
Alignment explanation
Indices: 63013882--63014014 Score: 102
Period size: 27 Copynumber: 5.2 Consensus size: 26
63013872 AGTTTACTAT
63013882 AATTATCGAAATACCCTCGATTTGTAA
1 AATTA-CGAAATACCCTCGATTTGTAA
63013909 AATTACTGAAATA--C-C--TTTGTAA
1 AATTAC-GAAATACCCTCGATTTGTAA
* * *
63013931 AATTACCAAAGTACCCCCGATTTATAA
1 AATTACGAAA-TACCCTCGATTTGTAA
*
63013958 AATTACCGAAATACCGTCGA-TTGTAA
1 AATTA-CGAAATACCCTCGATTTGTAA
* *
63013984 AATTACTGAAGTA-CCTCAAATTT-TAA
1 AATTAC-GAAATACCCTC-GATTTGTAA
63014010 AATTA
1 AATTA
63014015 TCAAAGTAAC
Statistics
Matches: 86, Mismatches: 9, Indels: 23
0.73 0.08 0.19
Matches are distributed among these distances:
21 3 0.03
22 15 0.17
24 2 0.02
25 6 0.07
26 25 0.29
27 31 0.36
28 4 0.05
ACGTcount: A:0.41, C:0.18, G:0.10, T:0.32
Consensus pattern (26 bp):
AATTACGAAATACCCTCGATTTGTAA
Found at i:63013945 original size:22 final size:22
Alignment explanation
Indices: 63013902--63013945 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
63013892 ATACCCTCGA
*
63013902 TTTGTAAAATTACTGAAATACC
1 TTTGTAAAATTACTCAAATACC
63013924 TTTGTAAAATTAC-CAAAGTACC
1 TTTGTAAAATTACTCAAA-TACC
63013946 CCCGATTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 3 0.15
22 17 0.85
ACGTcount: A:0.41, C:0.16, G:0.09, T:0.34
Consensus pattern (22 bp):
TTTGTAAAATTACTCAAATACC
Found at i:63014057 original size:27 final size:27
Alignment explanation
Indices: 63014029--63014254 Score: 326
Period size: 27 Copynumber: 8.4 Consensus size: 27
63014019 AGTAACCCCA
*
63014029 ATTTATAGAATTACCATTTTACCCTCA
1 ATTTATAGAATTACCATTTTACCCTCG
63014056 ATTTATAGAATTACCATTTTACCCTCG
1 ATTTATAGAATTACCATTTTACCCTCG
63014083 ATTTATAGAATTACCATTTTACCCTCG
1 ATTTATAGAATTACCATTTTACCCTCG
* *
63014110 ATTTATAGAATTATCGTTTTACCCTCG
1 ATTTATAGAATTACCATTTTACCCTCG
* * * * *
63014137 ATTTACAAAACTACCTTTTTACCCTTG
1 ATTTATAGAATTACCATTTTACCCTCG
*
63014164 ATTTATAAAATTACCATTTTACCCTCG
1 ATTTATAGAATTACCATTTTACCCTCG
*
63014191 ATTTATAGAAATACCATTTTACCCTCG
1 ATTTATAGAATTACCATTTTACCCTCG
* ***
63014218 ATTTATAAAATTATTGTTTTACCCTCG
1 ATTTATAGAATTACCATTTTACCCTCG
63014245 ATTTATAGAA
1 ATTTATAGAA
63014255 ATATCGTTTT
Statistics
Matches: 178, Mismatches: 21, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 178 1.00
ACGTcount: A:0.31, C:0.20, G:0.07, T:0.42
Consensus pattern (27 bp):
ATTTATAGAATTACCATTTTACCCTCG
Found at i:63014255 original size:54 final size:54
Alignment explanation
Indices: 63014029--63014287 Score: 331
Period size: 54 Copynumber: 4.8 Consensus size: 54
63014019 AGTAACCCCA
* * *
63014029 ATTTATAGAATTACCATTTTACCCTCAATTTATAGAATTACCATTTTACCCTCG
1 ATTTATAGAAATACCATTTTACCCTCGATTTATAAAATTACCATTTTACCCTCG
* * * *
63014083 ATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTATCGTTTTACCCTCG
1 ATTTATAGAAATACCATTTTACCCTCGATTTATAAAATTACCATTTTACCCTCG
* * *
63014137 ATTTACA-AAACTACCTTTTTACCCTTGATTTATAAAATTACCATTTTACCCTCG
1 ATTTATAGAAA-TACCATTTTACCCTCGATTTATAAAATTACCATTTTACCCTCG
***
63014191 ATTTATAGAAATACCATTTTACCCTCGATTTATAAAATTATTGTTTTACCCTCG
1 ATTTATAGAAATACCATTTTACCCTCGATTTATAAAATTACCATTTTACCCTCG
* * * * * *
63014245 ATTTATAGAAATATCGTTTTACTCTTGGTTTACAAAATTACCA
1 ATTTATAGAAATACCATTTTACCCTCGATTTATAAAATTACCA
63014288 AAACACCCTT
Statistics
Matches: 178, Mismatches: 25, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
53 2 0.01
54 173 0.97
55 3 0.02
ACGTcount: A:0.31, C:0.20, G:0.07, T:0.42
Consensus pattern (54 bp):
ATTTATAGAAATACCATTTTACCCTCGATTTATAAAATTACCATTTTACCCTCG
Found at i:63014287 original size:81 final size:80
Alignment explanation
Indices: 63014029--63014287 Score: 297
Period size: 81 Copynumber: 3.2 Consensus size: 80
63014019 AGTAACCCCA
* * * * *
63014029 ATTTATAGAATTACCATTTTACCCTCAATTTATAGAATTACCATTTTACCCTCGATTTATAGAAT
1 ATTTATAAAATTACCATTTTACCCTCGATTTATAAAATTA-CTTTTTACCCTCGATTTATAGAAA
63014094 TACCATTTTACCCTCG
65 TACCATTTTACCCTCG
* * * * * *
63014110 ATTTATAGAATTATCGTTTTACCCTCGATTTACAAAACTACCTTTTTACCCTTGATTTATA-AAA
1 ATTTATAAAATTACCATTTTACCCTCGATTTATAAAATTA-CTTTTTACCCTCGATTTATAGAAA
63014174 TTACCATTTTACCCTCG
65 -TACCATTTTACCCTCG
*
63014191 ATTTATAGAAA-TACCATTTTACCCTCGATTTATAAAATTATTGTTTTACCCTCGATTTATAGAA
1 ATTTATA-AAATTACCATTTTACCCTCGATTTATAAAATTACT-TTTTACCCTCGATTTATAGAA
* * * *
63014255 ATATCGTTTTACTCTTG
64 ATACCATTTTACCCTCG
* *
63014272 GTTTACAAAATTACCA
1 ATTTATAAAATTACCA
63014288 AAACACCCTT
Statistics
Matches: 151, Mismatches: 22, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
80 6 0.04
81 140 0.93
82 5 0.03
ACGTcount: A:0.31, C:0.20, G:0.07, T:0.42
Consensus pattern (80 bp):
ATTTATAAAATTACCATTTTACCCTCGATTTATAAAATTACTTTTTACCCTCGATTTATAGAAAT
ACCATTTTACCCTCG
Found at i:63014298 original size:27 final size:27
Alignment explanation
Indices: 63014268--63014419 Score: 196
Period size: 27 Copynumber: 5.6 Consensus size: 27
63014258 TCGTTTTACT
** *
63014268 CTTGGTTTACAAAATTACCAAAACACC
1 CTTGGTTTGTAAAATTACCAAAATACC
63014295 CTTGGTTTGTAAAATTACCAAAATACC
1 CTTGGTTTGTAAAATTACCAAAATACC
*
63014322 CTTGGTTTGTAAAATTACTAAAATACC
1 CTTGGTTTGTAAAATTACCAAAATACC
* *
63014349 CTTGATTTATAAAATTACCAAAATACC
1 CTTGGTTTGTAAAATTACCAAAATACC
* * *
63014376 CATGGTTTGCAAATTTACCAAAATACC
1 CTTGGTTTGTAAAATTACCAAAATACC
* * *
63014403 CCTGATTTGTGAAATTA
1 CTTGGTTTGTAAAATTA
63014420 TCGAAAAACC
Statistics
Matches: 108, Mismatches: 17, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 108 1.00
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.33
Consensus pattern (27 bp):
CTTGGTTTGTAAAATTACCAAAATACC
Found at i:63014418 original size:81 final size:81
Alignment explanation
Indices: 63014268--63014436 Score: 223
Period size: 81 Copynumber: 2.1 Consensus size: 81
63014258 TCGTTTTACT
* * * * *
63014268 CTTGGTTTACAAAATTACCAAAACACCCTTGGTTTGTAAAATTACCAAAATACCCTTGGTTTGTA
1 CTTGATTTACAAAATTACCAAAACACCCATGGTTTGCAAAATTACCAAAATACCCCTGATTTGTA
*
63014333 AAATTA-CTAAAATACC
66 AAATTATCGAAAA-ACC
* * * *
63014349 CTTGATTTATAAAATTACCAAAATACCCATGGTTTGCAAATTTACCAAAATACCCCTGATTTGTG
1 CTTGATTTACAAAATTACCAAAACACCCATGGTTTGCAAAATTACCAAAATACCCCTGATTTGTA
63014414 AAATTATCGAAAAACC
66 AAATTATCGAAAAACC
*
63014430 CTCGATT
1 CTTGATT
63014437 CGTAAAATAT
Statistics
Matches: 76, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
81 71 0.93
82 5 0.07
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.32
Consensus pattern (81 bp):
CTTGATTTACAAAATTACCAAAACACCCATGGTTTGCAAAATTACCAAAATACCCCTGATTTGTA
AAATTATCGAAAAACC
Found at i:63014479 original size:27 final size:27
Alignment explanation
Indices: 63014448--63014744 Score: 423
Period size: 27 Copynumber: 11.0 Consensus size: 27
63014438 GTAAAATATT
*
63014448 GAAATACCCTTGTAAGGTAGAATTACC
1 GAAATACCCTTGTAGGGTAGAATTACC
* *
63014475 GAAATACCCTTGTAGGGTAAAATTATC
1 GAAATACCCTTGTAGGGTAGAATTACC
* * *
63014502 GAAATACCCCTATAGGGTAGAACTACC
1 GAAATACCCTTGTAGGGTAGAATTACC
*
63014529 GAAATACCCTTGTAGGATAGAATTACC
1 GAAATACCCTTGTAGGGTAGAATTACC
*
63014556 GAAATACCCTTGTAGGGTAGAACTACC
1 GAAATACCCTTGTAGGGTAGAATTACC
* *
63014583 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCTTGTAGGGTAGAATTACC
* *
63014610 TAAATACCCTTGTGGGGTAGAATTACC
1 GAAATACCCTTGTAGGGTAGAATTACC
*
63014637 GAAATACCCTTGTAGGGTAGAAATACC
1 GAAATACCCTTGTAGGGTAGAATTACC
* *
63014664 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCTTGTAGGGTAGAATTACC
*
63014691 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCTTGTAGGGTAGAATTACC
* * *
63014718 GAGATACCCTTGTGGGGTAAAATTACC
1 GAAATACCCTTGTAGGGTAGAATTACC
63014745 ATTTTACCCC
Statistics
Matches: 238, Mismatches: 32, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 238 1.00
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.25
Consensus pattern (27 bp):
GAAATACCCTTGTAGGGTAGAATTACC
Found at i:63015135 original size:32 final size:33
Alignment explanation
Indices: 63015074--63015137 Score: 85
Period size: 33 Copynumber: 2.0 Consensus size: 33
63015064 CTCGCTGCAA
* *
63015074 TCTGGTAGCTTCGGCACATATATATATATCTGT
1 TCTGGTAGCTTAGCCACATATATATATATCTGT
* *
63015107 TCTGGTGGCTTAGCCACA-ATATCTATATCTG
1 TCTGGTAGCTTAGCCACATATATATATATCTG
63015138 GTGATTTCGT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 12 0.44
33 15 0.56
ACGTcount: A:0.23, C:0.20, G:0.19, T:0.38
Consensus pattern (33 bp):
TCTGGTAGCTTAGCCACATATATATATATCTGT
Found at i:63015348 original size:6 final size:6
Alignment explanation
Indices: 63015279--63015463 Score: 103
Period size: 6 Copynumber: 30.0 Consensus size: 6
63015269 GCATTCACAC
* * * *
63015279 TCTGAT TCTG-T TACCTGAT ACTGAT TTTGAT TCTG-T TACCTAAT TTTGAT
1 TCTGAT TCTGAT T--CTGAT TCTGAT TCTGAT TCTGAT T--CTGAT TCTGAT
* * *
63015329 TCTAAT TTTGAT TCTGAT TCTG-T TACCTGAT ACTGAT TCTGAT TCT-AT
1 TCTGAT TCTGAT TCTGAT TCTGAT T--CTGAT TCTGAT TCTGAT TCTGAT
* * * * *
63015377 TACCTAAT TCTGAT TCTGAT TTTGAT TTTGAT TCTG-T CACCTGAT TCTTAT
1 T--CTGAT TCTGAT TCTGAT TCTGAT TCTGAT TCTGAT --TCTGAT TCTGAT
* *
63015428 TCTGAT TCTGAT TCTCAT TTTGAT TCT-AGT TCTGAT
1 TCTGAT TCTGAT TCTGAT TCTGAT TCTGA-T TCTGAT
63015464 AATGTTTCTT
Statistics
Matches: 137, Mismatches: 25, Indels: 34
0.70 0.13 0.17
Matches are distributed among these distances:
5 11 0.08
6 104 0.76
7 14 0.10
8 8 0.06
ACGTcount: A:0.19, C:0.17, G:0.13, T:0.51
Consensus pattern (6 bp):
TCTGAT
Found at i:63015371 original size:25 final size:25
Alignment explanation
Indices: 63015337--63015397 Score: 95
Period size: 25 Copynumber: 2.4 Consensus size: 25
63015327 ATTCTAATTT
* *
63015337 TGATTCTGATTCTGTTACCTGATAC
1 TGATTCTGATTCTATTACCTAATAC
*
63015362 TGATTCTGATTCTATTACCTAATTC
1 TGATTCTGATTCTATTACCTAATAC
63015387 TGATTCTGATT
1 TGATTCTGATT
63015398 TTGATTTTGA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.21, C:0.18, G:0.13, T:0.48
Consensus pattern (25 bp):
TGATTCTGATTCTATTACCTAATAC
Found at i:63015380 original size:62 final size:62
Alignment explanation
Indices: 63015279--63015455 Score: 250
Period size: 62 Copynumber: 2.9 Consensus size: 62
63015269 GCATTCACAC
* *
63015279 TCTGATTCTGTTACCTGATACTGATTTTGATTCTGTTACCTAATTTTGATTCTAATTTTGAT
1 TCTGATTCTGTTACCTGATACTGATTCTGATTCTATTACCTAATTTTGATTCTAATTTTGAT
* *
63015341 TCTGATTCTGTTACCTGATACTGATTCTGATTCTATTACCTAATTCTGATTCTGATTTTGAT
1 TCTGATTCTGTTACCTGATACTGATTCTGATTCTATTACCTAATTTTGATTCTAATTTTGAT
* * * * *
63015403 TTTGATTCTGTCACCTGATTCTTATTCTGATTCTGATT--CTCATTTTGATTCTA
1 TCTGATTCTGTTACCTGATACTGATTCTGATTCT-ATTACCTAATTTTGATTCTA
63015456 GTTCTGATAA
Statistics
Matches: 103, Mismatches: 11, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
61 12 0.12
62 88 0.85
63 3 0.03
ACGTcount: A:0.20, C:0.17, G:0.12, T:0.51
Consensus pattern (62 bp):
TCTGATTCTGTTACCTGATACTGATTCTGATTCTATTACCTAATTTTGATTCTAATTTTGAT
Found at i:63015396 original size:37 final size:37
Alignment explanation
Indices: 63015355--63015442 Score: 113
Period size: 37 Copynumber: 2.4 Consensus size: 37
63015345 ATTCTGTTAC
* *
63015355 CTGATACTGATTCTGATTCTATTACCTAATTCTGATT
1 CTGATTCTGATTCTGATTCTATCACCTAATTCTGATT
* * * * *
63015392 CTGATTTTGATTTTGATTCTGTCACCTGATTCTTATT
1 CTGATTCTGATTCTGATTCTATCACCTAATTCTGATT
63015429 CTGATTCTGATTCT
1 CTGATTCTGATTCT
63015443 CATTTTGATT
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
37 42 1.00
ACGTcount: A:0.19, C:0.18, G:0.12, T:0.50
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCTATCACCTAATTCTGATT
Found at i:63016624 original size:20 final size:22
Alignment explanation
Indices: 63016601--63016651 Score: 54
Period size: 21 Copynumber: 2.4 Consensus size: 22
63016591 GCGTCACCAC
*
63016601 TTTTTTTAT-ATTAAAATATT-
1 TTTTTTTATAAATAAAATATTA
63016621 TTTTATTT-TAAATAAAATATTA
1 TTTT-TTTATAAATAAAATATTA
*
63016643 TTATTTTAT
1 TTTTTTTAT
63016652 TTTTTTAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
20 5 0.20
21 16 0.64
22 4 0.16
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (22 bp):
TTTTTTTATAAATAAAATATTA
Found at i:63016638 original size:21 final size:20
Alignment explanation
Indices: 63016612--63016650 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
63016602 TTTTTTATAT
*
63016612 TAAAATATTTTTTATTTTAAA
1 TAAAATA-TTATTATTTTAAA
63016633 TAAAATATTATTATTTTA
1 TAAAATATTATTATTTTA
63016651 TTTTTTTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (20 bp):
TAAAATATTATTATTTTAAA
Found at i:63016702 original size:19 final size:20
Alignment explanation
Indices: 63016680--63016718 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
63016670 ATATATACAC
*
63016680 CAGGTTAAAATAC-AGTTAA
1 CAGGTGAAAATACGAGTTAA
63016699 CAGGTGAAAATACGAGTTAA
1 CAGGTGAAAATACGAGTTAA
63016719 AAATACCCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.46, C:0.10, G:0.21, T:0.23
Consensus pattern (20 bp):
CAGGTGAAAATACGAGTTAA
Found at i:63016859 original size:16 final size:15
Alignment explanation
Indices: 63016840--63016905 Score: 55
Period size: 16 Copynumber: 4.1 Consensus size: 15
63016830 GAGACACAAG
63016840 AAGAAAAAAAAAGAA
1 AAGAAAAAAAAAGAA
*
63016855 TAAGAAGAAAGAAA-AA
1 -AAGAA-AAAAAAAGAA
63016871 AAGAAAGAAAGAAAG-A
1 AAGAAA-AAA-AAAGAA
63016887 AAGAAAGAAAGAAAGAA
1 AAGAAA-AAA-AAAGAA
63016904 AA
1 AA
63016906 AGGTAATGTA
Statistics
Matches: 43, Mismatches: 2, Indels: 9
0.80 0.04 0.17
Matches are distributed among these distances:
14 1 0.02
15 7 0.16
16 26 0.60
17 9 0.21
ACGTcount: A:0.79, C:0.00, G:0.20, T:0.02
Consensus pattern (15 bp):
AAGAAAAAAAAAGAA
Found at i:63016866 original size:4 final size:4
Alignment explanation
Indices: 63016859--63016904 Score: 83
Period size: 4 Copynumber: 11.5 Consensus size: 4
63016849 AAAGAATAAG
*
63016859 AAGA AAGA AAAA AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA AA
1 AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA AA
63016905 AAGGTAATGT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
4 40 1.00
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (4 bp):
AAGA
Found at i:63016876 original size:12 final size:12
Alignment explanation
Indices: 63016837--63016906 Score: 86
Period size: 12 Copynumber: 5.7 Consensus size: 12
63016827 GGAGAGACAC
*
63016837 AAGAAGAAAAAAA
1 AAGAA-AAAAAGA
*
63016850 AAGAATAAGAAGA
1 AAGAA-AAAAAGA
63016863 AAGAAAAAAAGA
1 AAGAAAAAAAGA
*
63016875 AAGAAAGAAAGA
1 AAGAAAAAAAGA
*
63016887 AAGAAAGAAAGA
1 AAGAAAAAAAGA
63016899 AAGAAAAA
1 AAGAAAAA
63016907 GGTAATGTAT
Statistics
Matches: 51, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
12 36 0.71
13 15 0.29
ACGTcount: A:0.79, C:0.00, G:0.20, T:0.01
Consensus pattern (12 bp):
AAGAAAAAAAGA
Found at i:63017139 original size:60 final size:60
Alignment explanation
Indices: 63017073--63017196 Score: 230
Period size: 60 Copynumber: 2.1 Consensus size: 60
63017063 TTTTTTATTT
*
63017073 TTTATAATTATTTTAAAATTAATTTGTTAATAATTTAGGATTATGTTATAAATTGTTGTG
1 TTTATAATTATTTTAAAATTAATTTATTAATAATTTAGGATTATGTTATAAATTGTTGTG
*
63017133 TTTATAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTATGTTATAAATTGTTGTG
1 TTTATAATTATTTTAAAATTAATTTATTAATAATTTAGGATTATGTTATAAATTGTTGTG
63017193 TTTA
1 TTTA
63017197 GTTTAGTATT
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 62 1.00
ACGTcount: A:0.35, C:0.00, G:0.11, T:0.54
Consensus pattern (60 bp):
TTTATAATTATTTTAAAATTAATTTATTAATAATTTAGGATTATGTTATAAATTGTTGTG
Found at i:63017281 original size:72 final size:72
Alignment explanation
Indices: 63017205--63017445 Score: 394
Period size: 72 Copynumber: 3.3 Consensus size: 72
63017195 TAGTTTAGTA
* * * * *
63017205 TTTTGTGATTTTTTATTAATGAAAAATTATTTTGTTAAATATTTTGTTTGTAATTTAATATAATT
1 TTTTGTGAGTTTTTAGTAATGTAAAATTATTTTGTTAAATATTTTGTTAGTAATTTATTATAATT
63017270 TGTTGTG
66 TGTTGTG
* *
63017277 TTTTGTGAGTTTTTAGTAATGTAAAATTATTTTGTTAAATATTTTGTCAGTAAATTATTATAATT
1 TTTTGTGAGTTTTTAGTAATGTAAAATTATTTTGTTAAATATTTTGTTAGTAATTTATTATAATT
63017342 TGTTGTG
66 TGTTGTG
*
63017349 TTTTGTGAGTTTTTAGTAATGTAAAATTATTTTGTTAAATATTTTGTTAGTAATCTATTATAAAT
1 TTTTGTGAGTTTTTAGTAATGTAAAATTATTTTGTTAAATATTTTGTTAGTAATTTATTAT-AAT
63017414 TT-TTGTG
65 TTGTTGTG
63017421 TTTTGTGAGTTTTTAGTAATGTAAA
1 TTTTGTGAGTTTTTAGTAATGTAAA
63017446 TTTTTCAAAA
Statistics
Matches: 158, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
72 153 0.97
73 5 0.03
ACGTcount: A:0.29, C:0.01, G:0.15, T:0.56
Consensus pattern (72 bp):
TTTTGTGAGTTTTTAGTAATGTAAAATTATTTTGTTAAATATTTTGTTAGTAATTTATTATAATT
TGTTGTG
Found at i:63017296 original size:38 final size:37
Alignment explanation
Indices: 63017254--63017444 Score: 118
Period size: 38 Copynumber: 5.2 Consensus size: 37
63017244 TATTTTGTTT
*
63017254 GTAATTTAATATAATTTGTTGTGTTTTGTGAGTTTTTA
1 GTAATGTAATATAATTT-TTGTGTTTTGTGAGTTTTTA
***
63017292 GTAATGT-A-A-AATTATTT-TGTTAAAT-A-TTTTGTCA
1 GTAATGTAATATAATT-TTTGTGTTTTGTGAGTTTT-T-A
*
63017326 GTAAAT-TATTATAATTTGTTGTGTTTTGTGAGTTTTTA
1 GT-AATGTAATATAATTT-TTGTGTTTTGTGAGTTTTTA
*** *
63017364 GTAATGT-A-A-AATTATTT-TGTTAAAT-ATTTTGTTA
1 GTAATGTAATATAATT-TTTGTGTTTTGTGAGTTT-TTA
* *
63017398 GTAATCTATTATAAATTTTTGTGTTTTGTGAGTTTTTA
1 GTAATGTAATAT-AATTTTTGTGTTTTGTGAGTTTTTA
63017436 GTAATGTAA
1 GTAATGTAA
63017445 ATTTTTCAAA
Statistics
Matches: 112, Mismatches: 21, Indels: 40
0.65 0.12 0.23
Matches are distributed among these distances:
32 4 0.04
33 6 0.05
34 23 0.21
35 15 0.13
36 7 0.06
37 13 0.12
38 34 0.30
39 6 0.05
40 4 0.04
ACGTcount: A:0.29, C:0.01, G:0.16, T:0.54
Consensus pattern (37 bp):
GTAATGTAATATAATTTTTGTGTTTTGTGAGTTTTTA
Found at i:63017329 original size:34 final size:33
Alignment explanation
Indices: 63017286--63017402 Score: 89
Period size: 34 Copynumber: 3.4 Consensus size: 33
63017276 GTTTTGTGAG
63017286 TTTT-TAGTAATGTAAAATTATTTTGTTAAATA
1 TTTTGTAGTAATGTAAAATTATTTTGTTAAATA
***
63017318 TTTTGTCAGTAAAT-TATTATAATT-TGTTGTGTTTTGTGA
1 TTTTGT-AGT-AATGTA--A-AATTAT-TT-TGTTAAAT-A
63017357 GTTTT-TAGTAATGTAAAATTATTTTGTTAAATA
1 -TTTTGTAGTAATGTAAAATTATTTTGTTAAATA
63017390 TTTTGTTAGTAAT
1 TTTTG-TAGTAAT
63017403 CTATTATAAA
Statistics
Matches: 65, Mismatches: 6, Indels: 26
0.67 0.06 0.27
Matches are distributed among these distances:
32 8 0.12
33 2 0.03
34 17 0.26
35 9 0.14
36 4 0.06
37 9 0.14
38 10 0.15
39 2 0.03
40 4 0.06
ACGTcount: A:0.31, C:0.01, G:0.14, T:0.55
Consensus pattern (33 bp):
TTTTGTAGTAATGTAAAATTATTTTGTTAAATA
Found at i:63017608 original size:96 final size:91
Alignment explanation
Indices: 63017406--63017610 Score: 254
Period size: 91 Copynumber: 2.2 Consensus size: 91
63017396 TAGTAATCTA
* *
63017406 TTATAAATT-TTTGTGTTTTGTGAGTTTTTAGTAATGTAAATTTTTCAAAAAATAATTTTATAGT
1 TTATAAATTGTTAGTGTTTTGTGAGTTTTTAGTAATGTAAATTTTTAAAAAAATAATTTTATAGT
63017470 TATTTTGTTAGTAGTTTATGATTAGG
66 TATTTTGTTAGTAGTTTATGATTAGG
* * * * *
63017496 TTATTAATTGTTAGTGTTTTGTTATTTTTTAGTAATGTAATTTCTTTTAAAAAAAT-GTTTTAGT
1 TTATAAATTGTTAGTGTTTTGTGAGTTTTTAGTAATGTAA-AT-TTTTAAAAAAATAATTTTA--
*
63017560 TATTTATTTTGTTAGTA-TTATATGGGATTAGG
62 TAGTTATTTTGTTAGTAGTT-TAT--GATTAGG
63017592 TTATAAATTGTTAGTGTTT
1 TTATAAATTGTTAGTGTTT
63017611 AGTTTAGGGT
Statistics
Matches: 98, Mismatches: 9, Indels: 10
0.84 0.08 0.09
Matches are distributed among these distances:
90 8 0.08
91 27 0.28
92 6 0.06
93 13 0.13
94 19 0.19
96 25 0.26
ACGTcount: A:0.28, C:0.01, G:0.16, T:0.55
Consensus pattern (91 bp):
TTATAAATTGTTAGTGTTTTGTGAGTTTTTAGTAATGTAAATTTTTAAAAAAATAATTTTATAGT
TATTTTGTTAGTAGTTTATGATTAGG
Found at i:63017710 original size:104 final size:105
Alignment explanation
Indices: 63017506--63017737 Score: 278
Period size: 104 Copynumber: 2.2 Consensus size: 105
63017496 TTATTAATTG
* * * * * *
63017506 TTAGTGTTTTGTTATTTTTTAGTAATGTAATTTCTTTTAAAAAAATGTTTTAGTTATTTATTTTG
1 TTAGGGTTTTGTGATTTTTTAGTAAAGTAA-TTCTTTAAAAAAAATATTTTAG-TAGTTATTTTG
*
63017571 TTAGTATTATATGGGATTAGGTTATAAATTGTTAGTGTTTAGT
64 TTAGTATTATAT-GGATTAGGTTATAAATTCTTAGTGTTTAGT
63017614 TTAGGGTTTTGTGATTTTTTAGTAAAGTAA-T-TTTAAAAAAAATAATTTTA-TAGTTATTTTGT
1 TTAGGGTTTTGTGATTTTTTAGTAAAGTAATTCTTTAAAAAAAAT-ATTTTAGTAGTTATTTTGT
*
63017676 TAGTAATT-TAT-GATTAAGTTATATAAATTCTTAGTGTTTAGT
65 TAGT-ATTATATGGATT-AGGT-TATAAATTCTTAGTGTTTAGT
*
63017718 TTA-GTTTTTGTGATTTTTTA
1 TTAGGGTTTTGTGATTTTTTA
63017738 AATTTAGTTT
Statistics
Matches: 111, Mismatches: 9, Indels: 13
0.83 0.07 0.10
Matches are distributed among these distances:
102 4 0.04
103 19 0.17
104 41 0.37
105 14 0.13
106 6 0.05
108 27 0.24
ACGTcount: A:0.29, C:0.01, G:0.16, T:0.55
Consensus pattern (105 bp):
TTAGGGTTTTGTGATTTTTTAGTAAAGTAATTCTTTAAAAAAAATATTTTAGTAGTTATTTTGTT
AGTATTATATGGATTAGGTTATAAATTCTTAGTGTTTAGT
Found at i:63019834 original size:33 final size:32
Alignment explanation
Indices: 63019775--63019841 Score: 98
Period size: 33 Copynumber: 2.1 Consensus size: 32
63019765 CAATATTCTG
* *
63019775 CTCCTTCCAGCCCTATCCACCGCTGTACTCCA
1 CTCCTCCCAGCCCTATCCACCACTGTACTCCA
*
63019807 CTCCTCCCAGCCTGTATCCACCACTGTACTCCA
1 CTCCTCCCAGCC-CTATCCACCACTGTACTCCA
63019840 CT
1 CT
63019842 ACTTCCTGCT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
32 11 0.35
33 20 0.65
ACGTcount: A:0.16, C:0.49, G:0.09, T:0.25
Consensus pattern (32 bp):
CTCCTCCCAGCCCTATCCACCACTGTACTCCA
Found at i:63020155 original size:80 final size:80
Alignment explanation
Indices: 63020042--63020244 Score: 304
Period size: 80 Copynumber: 2.5 Consensus size: 80
63020032 AATATCTTCA
* * **
63020042 TATTTATATAATGACTTTTTTTCCATTTTAGTTATTAATTTTATGGGTTTTTTTTTTTACAATTT
1 TATTTATGTAATGACTTTTTTGCCATTTTAGTTATTAATTTTAT-GAATTTTTTTTTTACAATTT
63020107 -AAATAGTA-AACTTTG
65 AAAATAG-ACAACTTTG
63020122 TATTTATGTAATGACTTTTTTGCCATTTTAGTTATTAATTTTATGAATTTTTTTTTTACAATTTA
1 TATTTATGTAATGACTTTTTTGCCATTTTAGTTATTAATTTTATGAATTTTTTTTTTACAATTTA
63020187 AAATAGACAACTTTG
66 AAATAGACAACTTTG
* *
63020202 TATTTATGTAATGA-TTTTTTCGCTATTTTAGTTATTAAATTTA
1 TATTTATGTAATGACTTTTTT-GCCATTTTAGTTATTAATTTTA
63020245 GGAGTTTCTT
Statistics
Matches: 114, Mismatches: 6, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
79 25 0.22
80 89 0.78
ACGTcount: A:0.29, C:0.06, G:0.09, T:0.56
Consensus pattern (80 bp):
TATTTATGTAATGACTTTTTTGCCATTTTAGTTATTAATTTTATGAATTTTTTTTTTACAATTTA
AAATAGACAACTTTG
Found at i:63024791 original size:8 final size:9
Alignment explanation
Indices: 63024766--63024793 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
63024756 CGAACGCTCA
63024766 ACCTCCCCC
1 ACCTCCCCC
63024775 ACCTCCCCC
1 ACCTCCCCC
63024784 ACCTCCCCC
1 ACCTCCCCC
63024793 A
1 A
63024794 ATTCCTCAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.14, C:0.75, G:0.00, T:0.11
Consensus pattern (9 bp):
ACCTCCCCC
Found at i:63037793 original size:17 final size:19
Alignment explanation
Indices: 63037767--63037806 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
63037757 CACCACTAAT
*
63037767 AAAATAATATATT-TTTAA
1 AAAATAATATATTATATAA
63037785 AAAAT-ATATATTATATAA
1 AAAATAATATATTATATAA
63037803 AAAA
1 AAAA
63037807 ATGGTGGCAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (19 bp):
AAAATAATATATTATATAA
Found at i:63038218 original size:16 final size:17
Alignment explanation
Indices: 63038192--63038238 Score: 51
Period size: 16 Copynumber: 2.7 Consensus size: 17
63038182 GATAATAAAG
* *
63038192 ATATAATTTTATTATTTT
1 ATAT-ATTTTAATATATT
63038210 AT-TATTTTAATATATT
1 ATATATTTTAATATATT
63038226 ATATATTTATAAT
1 ATATATTT-TAAT
63038239 TTTTAAAGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
16 13 0.52
17 6 0.24
18 6 0.24
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (17 bp):
ATATATTTTAATATATT
Found at i:63040004 original size:20 final size:20
Alignment explanation
Indices: 63039967--63040005 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
63039957 AAAAAAATAT
*
63039967 TTTTATATTAATATTTATTA
1 TTTTATATTAATAATTATTA
63039987 TTTTATATATAA-AATTATT
1 TTTTATAT-TAATAATTATT
63040006 TTAATAATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 14 0.82
21 3 0.18
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (20 bp):
TTTTATATTAATAATTATTA
Found at i:63041987 original size:40 final size:40
Alignment explanation
Indices: 63041875--63041988 Score: 174
Period size: 40 Copynumber: 2.8 Consensus size: 40
63041865 GCTTATAATT
* * **
63041875 TTAGTTTAATAATTGAGTTGCTGGACTTTATTAGACTCATC
1 TTAG-TTAATTATTGATTTGCTGGACTTTATTTTACTCATC
63041916 TTAGTTAATTATTGATTTGCTGGACTTTATTTTACTCATC
1 TTAGTTAATTATTGATTTGCTGGACTTTATTTTACTCATC
*
63041956 TTAGTTAATTATTGATTTGCTAGACTTTATTTT
1 TTAGTTAATTATTGATTTGCTGGACTTTATTTT
63041989 TATTAAACTC
Statistics
Matches: 68, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
40 64 0.94
41 4 0.06
ACGTcount: A:0.25, C:0.11, G:0.14, T:0.51
Consensus pattern (40 bp):
TTAGTTAATTATTGATTTGCTGGACTTTATTTTACTCATC
Found at i:63042008 original size:46 final size:43
Alignment explanation
Indices: 63041901--63042012 Score: 140
Period size: 40 Copynumber: 2.6 Consensus size: 43
63041891 GTTGCTGGAC
*
63041901 TTTATTAGACTCATCTTAGTTAATTATTGATTTGCTGGACTTTA
1 TTTATTA-ACTCATCTTAGTTAATTATTGATTTGCTAGACTTTA
63041945 -TT-TT-ACTCATCTTAGTTAATTATTGATTTGCTAGACTTTA
1 TTTATTAACTCATCTTAGTTAATTATTGATTTGCTAGACTTTA
* *
63041985 TTTTTATTAAACTCCTTTTAGTTAATTA
1 --TTTATT-AACTCATCTTAGTTAATTA
63042013 ATTGCCTAAA
Statistics
Matches: 59, Mismatches: 3, Indels: 10
0.82 0.04 0.14
Matches are distributed among these distances:
40 35 0.59
42 2 0.03
43 4 0.07
44 2 0.03
46 16 0.27
ACGTcount: A:0.26, C:0.12, G:0.10, T:0.53
Consensus pattern (43 bp):
TTTATTAACTCATCTTAGTTAATTATTGATTTGCTAGACTTTA
Found at i:63043966 original size:22 final size:20
Alignment explanation
Indices: 63043936--63043975 Score: 53
Period size: 22 Copynumber: 1.9 Consensus size: 20
63043926 AGCAATATAA
63043936 AATGATAAAATAATGTAATTTT
1 AATGATAAAAT--TGTAATTTT
*
63043958 AATGGTAAAATTGTAATT
1 AATGATAAAATTGTAATT
63043976 ATGTTGAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 7 0.41
22 10 0.59
ACGTcount: A:0.47, C:0.00, G:0.12, T:0.40
Consensus pattern (20 bp):
AATGATAAAATTGTAATTTT
Found at i:63048453 original size:24 final size:24
Alignment explanation
Indices: 63048426--63048477 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
63048416 TTTCTCATAG
63048426 CTTCCTTGGGTTCCCACATTGCCT
1 CTTCCTTGGGTTCCCACATTGCCT
63048450 CTTCCTTGGGTTCCCACATTGCCT
1 CTTCCTTGGGTTCCCACATTGCCT
63048474 CTTC
1 CTTC
63048478 GAAACCGTGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.08, C:0.38, G:0.15, T:0.38
Consensus pattern (24 bp):
CTTCCTTGGGTTCCCACATTGCCT
Found at i:63051885 original size:42 final size:42
Alignment explanation
Indices: 63051838--63051921 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
63051828 AGATGGTCTC
63051838 CCTCTAGCAGCTGTATTACTTGGTATTGTATTCAAAAATTTA
1 CCTCTAGCAGCTGTATTACTTGGTATTGTATTCAAAAATTTA
*
63051880 CCTCTAGCAGCTGTATTACTTGGTCTTGTATTCAAAAATTTA
1 CCTCTAGCAGCTGTATTACTTGGTATTGTATTCAAAAATTTA
63051922 TCTTTCTTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.27, C:0.18, G:0.14, T:0.40
Consensus pattern (42 bp):
CCTCTAGCAGCTGTATTACTTGGTATTGTATTCAAAAATTTA
Found at i:63053887 original size:17 final size:18
Alignment explanation
Indices: 63053855--63053889 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
63053845 CCATGTCATT
63053855 TGCCCATGTGGGCCCACA
1 TGCCCATGTGGGCCCACA
63053873 TGCCCATGT-GGCCCACA
1 TGCCCATGTGGGCCCACA
63053890 AGGCCCAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.17, C:0.40, G:0.26, T:0.17
Consensus pattern (18 bp):
TGCCCATGTGGGCCCACA
Found at i:63053895 original size:18 final size:18
Alignment explanation
Indices: 63053856--63053896 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
63053846 CATGTCATTT
*
63053856 GCCCATGTGGGCCCACAT
1 GCCCATGTGGGCCCACAG
63053874 GCCCATGT-GGCCCACAAG
1 GCCCATGTGGGCCCAC-AG
63053892 GCCCA
1 GCCCA
63053897 AAATTGGTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.20, C:0.41, G:0.27, T:0.12
Consensus pattern (18 bp):
GCCCATGTGGGCCCACAG
Found at i:63056435 original size:45 final size:44
Alignment explanation
Indices: 63056334--63056460 Score: 118
Period size: 45 Copynumber: 2.9 Consensus size: 44
63056324 TTTTCTCAAA
* * *
63056334 TCACTGGCATT-TCGCCTGTTAGGCTCGAGGCCCG-ATATCAGT
1 TCACCGGCATTATAGCCTGCTAGGCTCGAGGCCCGAATATCAGT
63056376 TCACCGGCATTATAGCCTGCTAGGCTCGATGGCCCGAATAGT-A-T
1 TCACCGGCATTATAGCCTGCTAGGCTCGA-GGCCCGAATA-TCAGT
* ** * *
63056420 CTCACCGGTATTATAGTTTGCTAAGCTCAAAGGCCCGAATA
1 -TCACCGGCATTATAGCCTGCTAGGCTC-GAGGCCCGAATA
63056461 ATCAAGTCAA
Statistics
Matches: 71, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
42 10 0.14
43 15 0.21
44 7 0.10
45 37 0.52
46 2 0.03
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.27
Consensus pattern (44 bp):
TCACCGGCATTATAGCCTGCTAGGCTCGAGGCCCGAATATCAGT
Found at i:63056838 original size:43 final size:43
Alignment explanation
Indices: 63056777--63056965 Score: 267
Period size: 43 Copynumber: 4.4 Consensus size: 43
63056767 ACATATCATT
* *
63056777 TCACCGGCATTACGCCTGCTAGGCACGAAGGCCCGAATACACA
1 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
* *
63056820 TCACCGGTA-TAAAGCCTGCTAGGCATGAAGGCCCGAATACACA
1 TCACCGGCACT-AAGCCTGCTAGGCACGAAGGCCCGAATACACA
*
63056863 TCACCGGCACTAAGCCTGCTAGGCACAAAGGCCCGAATACACA
1 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
* *
63056906 TCACCGACACTAAGCCTGCTAGGCACGAAGGCCCGAATATA-A
1 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
* *
63056948 T-ACCAGCACTAGGCCTGC
1 TCACCGGCACTAAGCCTGC
63056966 GGGATTTATA
Statistics
Matches: 132, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
41 14 0.11
42 3 0.02
43 114 0.86
44 1 0.01
ACGTcount: A:0.31, C:0.33, G:0.22, T:0.14
Consensus pattern (43 bp):
TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
Found at i:63057511 original size:17 final size:17
Alignment explanation
Indices: 63057489--63057523 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
63057479 GCATATCACA
63057489 TACCTTAATAATTTACT
1 TACCTTAATAATTTACT
63057506 TACCTTAATAATTTACT
1 TACCTTAATAATTTACT
63057523 T
1 T
63057524 TACGGAACTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.34, C:0.17, G:0.00, T:0.49
Consensus pattern (17 bp):
TACCTTAATAATTTACT
Found at i:63062391 original size:43 final size:43
Alignment explanation
Indices: 63062343--63062475 Score: 209
Period size: 43 Copynumber: 3.1 Consensus size: 43
63062333 CCGGCATTAC
63062343 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGACACTAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGACACTAA
* *
63062386 GCCTGCTAGGCATGAAGGCCCGAATACACATCACCGGCACTAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGACACTAA
*
63062429 GCCTGCTAGGCACGAAGGCCCGAATATA-AT-ACC-AGCACTAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGA-CACTAA
63062470 GCCTGC
1 GCCTGC
63062476 GGGATTTATC
Statistics
Matches: 84, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
41 15 0.18
42 2 0.02
43 67 0.80
ACGTcount: A:0.31, C:0.33, G:0.23, T:0.14
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGACACTAA
Found at i:63065776 original size:19 final size:20
Alignment explanation
Indices: 63065741--63065782 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
63065731 CGATAACTTC
*
63065741 AGAAAATTTTTGGAAAACAT
1 AGAAAATTTTTGCAAAACAT
*
63065761 AGAAAATTTTT-CAAAATAT
1 AGAAAATTTTTGCAAAACAT
63065780 AGA
1 AGA
63065783 GGACACATGC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 9 0.45
20 11 0.55
ACGTcount: A:0.52, C:0.05, G:0.12, T:0.31
Consensus pattern (20 bp):
AGAAAATTTTTGCAAAACAT
Found at i:63070618 original size:27 final size:28
Alignment explanation
Indices: 63070583--63070644 Score: 92
Period size: 27 Copynumber: 2.3 Consensus size: 28
63070573 TATAACTTAC
63070583 ATAG-GGGCAAAATAGTCATCTTACCAT
1 ATAGAGGGCAAAATAGTCATCTTACCAT
* *
63070610 ATA-AGGGCAAAATAGTCATTTTATCAT
1 ATAGAGGGCAAAATAGTCATCTTACCAT
63070637 ATAGAGGG
1 ATAGAGGG
63070645 GGTCTAGGTA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
27 27 0.87
28 4 0.13
ACGTcount: A:0.39, C:0.13, G:0.21, T:0.27
Consensus pattern (28 bp):
ATAGAGGGCAAAATAGTCATCTTACCAT
Found at i:63074482 original size:757 final size:757
Alignment explanation
Indices: 63073028--63074541 Score: 2938
Period size: 757 Copynumber: 2.0 Consensus size: 757
63073018 CATTATTGAC
63073028 ATAGAGGATGACAACTCGTGTAACACTCCTAACCCGTATCCGTTGCCGGAATAAGGTTATGAGGT
1 ATAGAGGATGACAACTCGTGTAACACTCCTAACCCGTATCCGTTGCCGGAATAAGGTTATGAGGT
*
63073093 ATTACTTGACTGAACAAAATTTCTATAAGGTCAAAGATACTTACCAGACATAAATTATCAACAAT
66 ATTACTTGACTGAACAAAACTTCTATAAGGTCAAAGATACTTACCAGACATAAATTATCAACAAT
**
63073158 GTAAACATGTCTCATTGATTTTCCATAAGAGGTCTTATAAATTTCCAAAATGACTCACTATCAAA
131 GTAAACATGTCTCATTGATTTTCCATAAGAACTCTTATAAATTTCCAAAATGACTCACTATCAAA
63073223 ACATAACCGAATATCTAATAACAATTTAAATACTGTCAAGTTATAACTAAAACATTTCACCACAT
196 ACATAACCGAATATCTAATAACAATTTAAATACTGTCAAGTTATAACTAAAACATTTCACCACAT
*
63073288 TAGTTCAATTATAAGGCTTCTCTAAACAAAATGAGCAAGCCATCTTCGCATGGCTATAATGTATA
261 TAGTTCAATTATAAGGCTGCTCTAAACAAAATGAGCAAGCCATCTTCGCATGGCTATAATGTATA
*
63073353 CAAGTCGAAATATCATTCTACCTATAGTCTATCCTATACATGCCTTAAACCATGATGATGTACAA
326 CAAGTCGAAATATCATTCTACCTATAGTCTATCCTATACATGCCTTAAACCATGATGATATACAA
*
63073418 TCTTCTCAACTCACATAATGACTCGATAGTGTGATGATATCTCTGGCCCTTCCAACTCGAGCTAA
391 TCTTCTCAACTCACATAATGACTCGATAGTGTGATGATATCTCCGGCCCTTCCAACTCGAGCTAA
63073483 GGTATAAACCTATAAGAAATGGAAAAGAGAACACGGAGTAAGCTTCAATGCTTAGTAAGTTTTAA
456 GGTATAAACCTATAAGAAATGGAAAAGAGAACACGGAGTAAGCTTCAATGCTTAGTAAGTTTTAA
63073548 GCAATGCAAACAATTAATTTACTTATAAATCGATTATTCAAATTTTCAAGAAATCATTCCTAGAT
521 GCAATGCAAACAATTAATTTACTTATAAATCGATTATTCAAATTTTCAAGAAATCATTCCTAGAT
63073613 AATTGCCATTTTGGCCAAGTATCCATGAACATAATGCATATGTAGCAAATTCACCTCACTTGAAT
586 AATTGCCATTTTGGCCAAGTATCCATGAACATAATGCATATGTAGCAAATTCACCTCACTTGAAT
*
63073678 CTGAACTCAATTAAAACCAAATATTGAAATCACAAATAAGATCATAAGAACTCGAAAAGCATTTC
651 CTGAACTCAATTAAAACCAAATATTGAAATCACAAATAAGATCATAAGAACTCGAAAAGCATCTC
63073743 ATTAACAAGTTTTAACCATGTTTGCAAAAAAAATCACAAATT
716 ATTAACAAGTTTTAACCATGTTTGCAAAAAAAATCACAAATT
63073785 ATAGAGGATGACAACTCGTGTAACACTCCTAACCCGTATCCGTTGCCGGAATAAGGTTATGAGGT
1 ATAGAGGATGACAACTCGTGTAACACTCCTAACCCGTATCCGTTGCCGGAATAAGGTTATGAGGT
63073850 ATTACTTGACTGAACAAAACTTCTATAAGGTCAAAGATACTTACCAGACATAAATTATCAACAAT
66 ATTACTTGACTGAACAAAACTTCTATAAGGTCAAAGATACTTACCAGACATAAATTATCAACAAT
*
63073915 GTAAACATGTCTCATTGATTTTCCTTAAGAACTCTTATAAATTTCCAAAATGACTCACTATCAAA
131 GTAAACATGTCTCATTGATTTTCCATAAGAACTCTTATAAATTTCCAAAATGACTCACTATCAAA
63073980 ACATAACCGAATATCTAATAACAATTTAAATACTGTCAAGTTATAACTAAAACATTTCACCACAT
196 ACATAACCGAATATCTAATAACAATTTAAATACTGTCAAGTTATAACTAAAACATTTCACCACAT
63074045 TAGTTCAATTATAAGGCTGCTCTAAACAAAATGAGCAAGCCATCTTCGCATGGCTATAATGTATA
261 TAGTTCAATTATAAGGCTGCTCTAAACAAAATGAGCAAGCCATCTTCGCATGGCTATAATGTATA
63074110 CAAGTCGAAATATCATTCTACCTATAGTCTATCCTATACATGCCTTAAACCATGATGATATACAA
326 CAAGTCGAAATATCATTCTACCTATAGTCTATCCTATACATGCCTTAAACCATGATGATATACAA
*
63074175 TCTTCTCAACTCACATGATGACTCGATAGTGTGATGATATCTCCGGCCCTTCCAACTCGAGCTAA
391 TCTTCTCAACTCACATAATGACTCGATAGTGTGATGATATCTCCGGCCCTTCCAACTCGAGCTAA
63074240 GGTATAAACCTATAAGAAATGGAAAAGAGAACACGGAGTAAGCTTCAATGCTTAGTAAGTTTTAA
456 GGTATAAACCTATAAGAAATGGAAAAGAGAACACGGAGTAAGCTTCAATGCTTAGTAAGTTTTAA
*
63074305 GCAATGCAAACAATTAATTTACTTATAGATCGATTATTCAAATTTTCAAGAAATCATTCCTAGAT
521 GCAATGCAAACAATTAATTTACTTATAAATCGATTATTCAAATTTTCAAGAAATCATTCCTAGAT
63074370 AATTGCCATTTTGGCCAAGTATCCATGAACATAATGCATATGTAGCAAATTCACCTCACTTGAAT
586 AATTGCCATTTTGGCCAAGTATCCATGAACATAATGCATATGTAGCAAATTCACCTCACTTGAAT
63074435 CTGAACTCAATTAAAACCAAATATTGAAATCACAAATAAGATCATAAGAACTCGAAAAGCATCTC
651 CTGAACTCAATTAAAACCAAATATTGAAATCACAAATAAGATCATAAGAACTCGAAAAGCATCTC
63074500 ATTAACAAGTTTTAACCATGTTTGCAAAAAAAATCACAAATT
716 ATTAACAAGTTTTAACCATGTTTGCAAAAAAAATCACAAATT
63074542 CACTACAAGC
Statistics
Matches: 747, Mismatches: 10, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
757 747 1.00
ACGTcount: A:0.39, C:0.19, G:0.13, T:0.29
Consensus pattern (757 bp):
ATAGAGGATGACAACTCGTGTAACACTCCTAACCCGTATCCGTTGCCGGAATAAGGTTATGAGGT
ATTACTTGACTGAACAAAACTTCTATAAGGTCAAAGATACTTACCAGACATAAATTATCAACAAT
GTAAACATGTCTCATTGATTTTCCATAAGAACTCTTATAAATTTCCAAAATGACTCACTATCAAA
ACATAACCGAATATCTAATAACAATTTAAATACTGTCAAGTTATAACTAAAACATTTCACCACAT
TAGTTCAATTATAAGGCTGCTCTAAACAAAATGAGCAAGCCATCTTCGCATGGCTATAATGTATA
CAAGTCGAAATATCATTCTACCTATAGTCTATCCTATACATGCCTTAAACCATGATGATATACAA
TCTTCTCAACTCACATAATGACTCGATAGTGTGATGATATCTCCGGCCCTTCCAACTCGAGCTAA
GGTATAAACCTATAAGAAATGGAAAAGAGAACACGGAGTAAGCTTCAATGCTTAGTAAGTTTTAA
GCAATGCAAACAATTAATTTACTTATAAATCGATTATTCAAATTTTCAAGAAATCATTCCTAGAT
AATTGCCATTTTGGCCAAGTATCCATGAACATAATGCATATGTAGCAAATTCACCTCACTTGAAT
CTGAACTCAATTAAAACCAAATATTGAAATCACAAATAAGATCATAAGAACTCGAAAAGCATCTC
ATTAACAAGTTTTAACCATGTTTGCAAAAAAAATCACAAATT
Found at i:63075611 original size:40 final size:40
Alignment explanation
Indices: 63075557--63075920 Score: 173
Period size: 39 Copynumber: 9.2 Consensus size: 40
63075547 GAATTCAATC
* * * *
63075557 ACCAACACAAAGCCTACGGGACTTTAGGCCCAGATATAGT
1 ACCAGCACGAAGCCTACGGGACCTTAAGCCCAGATATAGT
* * * * *
63075597 ACCAGTATGAAGCCTGC-GGACCTTAAGTCCGGATATAGT
1 ACCAGCACGAAGCCTACGGGACCTTAAGCCCAGATATAGT
* * * * *
63075636 ACCAGCACGAAGCCTAC-GGATCTTAAGTCCGGATACAAT
1 ACCAGCACGAAGCCTACGGGACCTTAAGCCCAGATATAGT
* * * * * *
63075675 TCCAGCACGAAGCCTGCGGGTCTTTAAGCCCAGATACAAT
1 ACCAGCACGAAGCCTACGGGACCTTAAGCCCAGATATAGT
* * * * * * * * *
63075715 TCTAGCAAGAAGCCTGCGGGTCTTTAAGCCCGGATACAAT
1 ACCAGCACGAAGCCTACGGGACCTTAAGCCCAGATATAGT
* * * * * * *
63075755 TCTAGCACGAAGCCTGC-GGACCTTAAGTCCGGATACAAT
1 ACCAGCACGAAGCCTACGGGACCTTAAGCCCAGATATAGT
* * * * * *
63075794 TCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATATAAT
1 ACCAGCACGAAGCCTACGGGACCTTAAGCCCAGATATAGT
* * * * * * * *
63075834 TCCAGTA-TATAGCCTGC-GGACCTTAAGTCCGGATACAAT
1 ACCAGCACGA-AGCCTACGGGACCTTAAGCCCAGATATAGT
* * * * *
63075873 TCCAGCACGAAGCCTGC-GGACCTTAAGTCCGGATATATT
1 ACCAGCACGAAGCCTACGGGACCTTAAGCCCAGATATAGT
*
63075912 TCCAGCACG
1 ACCAGCACG
63075921 TGGCCTGTGG
Statistics
Matches: 276, Mismatches: 44, Indels: 9
0.84 0.13 0.03
Matches are distributed among these distances:
39 162 0.59
40 114 0.41
ACGTcount: A:0.29, C:0.27, G:0.23, T:0.21
Consensus pattern (40 bp):
ACCAGCACGAAGCCTACGGGACCTTAAGCCCAGATATAGT
Found at i:63075633 original size:39 final size:39
Alignment explanation
Indices: 63075605--63076066 Score: 527
Period size: 39 Copynumber: 11.7 Consensus size: 39
63075595 GTACCAGTAT
* *
63075605 GAAGCCTGCGGACCTTAAGTCCGGATATAGTACCAGCAC
1 GAAGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCAC
* * *
63075644 GAAGCCTACGGATCTTAAGTCCGGATACAATTCCAGCAC
1 GAAGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCAC
* * * * * * *
63075683 GAAGCCTGCGGGTCTTTAAGCCCAGATACAATTCTAGCAA
1 GAAGCCTGC-GGACCTTAAGTCCGGATATAATTCCAGCAC
* * * * *
63075723 GAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCTAGCAC
1 GAAGCCTGC-GGACCTTAAGTCCGGATATAATTCCAGCAC
*
63075763 GAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCAC
1 GAAGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCAC
* * * *
63075802 GAAGCCTGCGGGTCTTTAAGCCCGGATATAATTCCAGTA-
1 GAAGCCTGC-GGACCTTAAGTCCGGATATAATTCCAGCAC
* *
63075841 TATAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCAC
1 GA-AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCAC
*
63075881 GAAGCCTGCGGACCTTAAGTCCGGATATATTTCCAGCAC
1 GAAGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCAC
** * *
63075920 GTGGCCTGTGGACCTTAAGTCCGGATATAATTCTAGCAC
1 GAAGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCAC
* *
63075959 -ATAGCCTGCAGACCTTAAGTCCGGATATAATTCTAGCAC
1 GA-AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCAC
*
63075998 -ATAGCCTGTGGACCTTAAGTCCGGATATAATTCCAGCAC
1 GA-AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCAC
*
63076037 -ATAGCCTGCGGACCTTTAAGCCCGGATATA
1 GA-AGCCTGCGGACC-TTAAGTCCGGATATA
63076067 GATCAAATAT
Statistics
Matches: 370, Mismatches: 47, Indels: 11
0.86 0.11 0.03
Matches are distributed among these distances:
39 254 0.69
40 116 0.31
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (39 bp):
GAAGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCAC
Found at i:63075946 original size:78 final size:78
Alignment explanation
Indices: 63075607--63076066 Score: 528
Period size: 79 Copynumber: 5.8 Consensus size: 78
63075597 ACCAGTATGA
* * * * * * *
63075607 AGCCTGCGGACCTTAAGTCCGGATATAGTACCAGCACGAAGCCTACGGATCTTAAGTCCGGATAC
1 AGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGCCCGGATAT
*
63075672 AATTCCAGCACGA
66 AATTCCAGCACGT
* * * * * * * *
63075685 AGCCTGCGGGTCTTTAAGCCCAGATACAATTCTAGCAAGAAGCCTGCGGGTCTTTAAGCCCGGAT
1 AGCCTGC-GGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGC-GGACCTTAAGCCCGGAT
* * *
63075750 ACAATTCTAGCACGA
64 ATAATTCCAGCACGT
* *
63075765 AGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATA
1 AGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGC-GGACCTTAAGCCCGGATA
* **
63075830 TAATTCCAGTATAT
65 TAATTCCAGCACGT
*
63075844 AGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGATAT
1 AGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGCCCGGATAT
*
63075909 ATTTCCAGCACGT
66 AATTCCAGCACGT
* * * * * *
63075922 GGCCTGTGGACCTTAAGTCCGGATATAATTCTAGCAC-ATAGCCTGCAGACCTTAAGTCCGGATA
1 AGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACGA-AGCCTGCGGACCTTAAGCCCGGATA
* *
63075986 TAATTCTAGCACAT
65 TAATTCCAGCACGT
* *
63076000 AGCCTGTGGACCTTAAGTCCGGATATAATTCCAGCAC-ATAGCCTGCGGACCTTTAAGCCCGGAT
1 AGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACGA-AGCCTGCGGACC-TTAAGCCCGGAT
63076064 ATA
64 ATA
63076067 GATCAAATAT
Statistics
Matches: 332, Mismatches: 46, Indels: 7
0.86 0.12 0.02
Matches are distributed among these distances:
77 1 0.00
78 148 0.45
79 149 0.45
80 34 0.10
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (78 bp):
AGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGCCCGGATAT
AATTCCAGCACGT
Found at i:63077163 original size:28 final size:28
Alignment explanation
Indices: 63077130--63077211 Score: 101
Period size: 28 Copynumber: 2.9 Consensus size: 28
63077120 ATTTAATCAT
* *
63077130 TCAATATTTTGCACACTAAGTGTCATTC
1 TCAATATTTCGCACACTAAGTGCCATTC
* *
63077158 TCAATATCTCGCACATTAAGTGCCATTC
1 TCAATATTTCGCACACTAAGTGCCATTC
* * *
63077186 TCAATATTTCGTACACTGAGTACCAT
1 TCAATATTTCGCACACTAAGTGCCAT
63077212 ATTTGATTGC
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 45 1.00
ACGTcount: A:0.29, C:0.24, G:0.11, T:0.35
Consensus pattern (28 bp):
TCAATATTTCGCACACTAAGTGCCATTC
Found at i:63082722 original size:23 final size:26
Alignment explanation
Indices: 63082690--63082742 Score: 76
Period size: 23 Copynumber: 2.2 Consensus size: 26
63082680 TTCGCAAGTA
*
63082690 CCACTGTCATTC-CCT-TTTTC-CCT
1 CCACTATCATTCGCCTCTTTTCTCCT
63082713 CCACTATCATTCGCCTCTTTTCTCCT
1 CCACTATCATTCGCCTCTTTTCTCCT
63082739 CCAC
1 CCAC
63082743 CATAAACCAC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
23 11 0.42
24 3 0.12
25 5 0.19
26 7 0.27
ACGTcount: A:0.11, C:0.45, G:0.04, T:0.40
Consensus pattern (26 bp):
CCACTATCATTCGCCTCTTTTCTCCT
Found at i:63086738 original size:17 final size:17
Alignment explanation
Indices: 63086700--63086747 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 17
63086690 TTGCTTACAA
63086700 AATTTGAATTTAATTTCT
1 AATTT-AATTTAATTTCT
*
63086718 AATTTAATTTTATTT-T
1 AATTTAATTTAATTTCT
63086734 GAATTT-ATTTAATT
1 -AATTTAATTTAATT
63086748 GTTTATTTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
16 8 0.30
17 14 0.52
18 5 0.19
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.60
Consensus pattern (17 bp):
AATTTAATTTAATTTCT
Found at i:63087719 original size:36 final size:35
Alignment explanation
Indices: 63087600--63087718 Score: 130
Period size: 36 Copynumber: 3.3 Consensus size: 35
63087590 ACTCTCTATC
* **
63087600 TTGGTGTGTTTCGGTTGGATTAGCTCTTCGGAGCCA
1 TTGGTGTGTTTCGGATGGATTAGCTCTTATGAG-CA
* *
63087636 TTGGTGTGTTTCAGATGGATTAGCTCTTATGATCA
1 TTGGTGTGTTTCGGATGGATTAGCTCTTATGAGCA
* * *
63087671 TTTGGAGTGTTTTGGATGGACTAGCTCTTATGAGCA
1 -TTGGTGTGTTTCGGATGGATTAGCTCTTATGAGCA
*
63087707 TCTAGTGTGTTT
1 T-TGGTGTGTTT
63087719 TAGTTGGAAT
Statistics
Matches: 69, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
35 3 0.04
36 66 0.96
ACGTcount: A:0.16, C:0.13, G:0.29, T:0.42
Consensus pattern (35 bp):
TTGGTGTGTTTCGGATGGATTAGCTCTTATGAGCA
Found at i:63088701 original size:25 final size:25
Alignment explanation
Indices: 63088673--63088724 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
63088663 TGTTACATTT
*
63088673 CCTGGCACATGGGCGTGTGATATGG
1 CCTGGCACATGGGCGTGTGACATGG
63088698 CCTGGCACATGGGCGTGTGACATGG
1 CCTGGCACATGGGCGTGTGACATGG
63088723 CC
1 CC
63088725 ATGTGACCCT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.15, C:0.25, G:0.38, T:0.21
Consensus pattern (25 bp):
CCTGGCACATGGGCGTGTGACATGG
Found at i:63092299 original size:32 final size:32
Alignment explanation
Indices: 63092263--63092326 Score: 110
Period size: 32 Copynumber: 2.0 Consensus size: 32
63092253 CCCATCATAG
*
63092263 TATCAATTGGGCCTAGCCCATCTCAGAATCAA
1 TATCAATTGGGCCTAGCCCATATCAGAATCAA
*
63092295 TATCAGTTGGGCCTAGCCCATATCAGAATCAA
1 TATCAATTGGGCCTAGCCCATATCAGAATCAA
63092327 ACCCATATGA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (32 bp):
TATCAATTGGGCCTAGCCCATATCAGAATCAA
Found at i:63092650 original size:27 final size:27
Alignment explanation
Indices: 63092618--63092679 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
63092608 GCAAATAGTC
* * *
63092618 ATTTTACCCTATAGGGGTATTTCTGTA
1 ATTTTACACTATAAGGGTATTTCAGTA
63092645 ATTTTACACTATAAGGGTATTTCAGTA
1 ATTTTACACTATAAGGGTATTTCAGTA
63092672 ATTTTACA
1 ATTTTACA
63092680 AACCGAGGGT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.29, C:0.13, G:0.15, T:0.44
Consensus pattern (27 bp):
ATTTTACACTATAAGGGTATTTCAGTA
Found at i:63092688 original size:27 final size:27
Alignment explanation
Indices: 63092632--63092692 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
63092622 TACCCTATAG
* * *
63092632 GGGTATTTCTGTAATTTTACACTATAA
1 GGGTATTTCAGTAATTTTACACAACAA
*
63092659 GGGTATTTCAGTAATTTTACA-AACCGA
1 GGGTATTTCAGTAATTTTACACAA-CAA
63092686 GGGTATT
1 GGGTATT
63092693 AACGACCCAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 1 0.03
27 28 0.97
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.39
Consensus pattern (27 bp):
GGGTATTTCAGTAATTTTACACAACAA
Found at i:63104994 original size:27 final size:27
Alignment explanation
Indices: 63104951--63105016 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
63104941 TACATGTATG
* * *
63104951 CTCACACGAACTGTGAAAATGGGCCTA
1 CTCACACGAGCTATGAAAATAGGCCTA
* *
63104978 CTCACACGAGCTATGAAAATAGGCTTG
1 CTCACACGAGCTATGAAAATAGGCCTA
63105005 CTCACACGAGCT
1 CTCACACGAGCT
63105017 GTGGGTTGGA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.32, C:0.27, G:0.21, T:0.20
Consensus pattern (27 bp):
CTCACACGAGCTATGAAAATAGGCCTA
Found at i:63112467 original size:40 final size:40
Alignment explanation
Indices: 63112412--63112597 Score: 302
Period size: 40 Copynumber: 4.7 Consensus size: 40
63112402 GATGATAACG
* * * *
63112412 GGGTTAAGTCCCGAAGACATTTGTGCTAGTGATTAATTCC
1 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
63112452 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
63112492 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
*
63112532 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCC
1 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCC
*
63112572 GGGCTAAGTCCCGAAGGCATTTGTGC
1 GGGTTAAGTCCCGAAGGCATTTGTGC
63112598 TAGTGACCAT
Statistics
Matches: 140, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
39 2 0.01
40 138 0.99
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (40 bp):
GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
Found at i:63112615 original size:40 final size:40
Alignment explanation
Indices: 63112416--63112633 Score: 298
Period size: 40 Copynumber: 5.5 Consensus size: 40
63112406 ATAACGGGGT
* * * * *
63112416 TAAGTCCCGAAGACATTTGTGCTAGTGATTAATTCCGGGT
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
*
63112456 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGT
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
63112496 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
63112536 TAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
* * *
63112576 TAAGTCCCGAAGGCATTTGTGCTAGTGACCATATT-CGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTCCGGGC
* *
63112616 TAAGGCCCGATGGC-TTTG
1 TAAGTCCCGAAGGCATTTG
63112634 CGAGTGGTTA
Statistics
Matches: 165, Mismatches: 10, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
39 6 0.04
40 156 0.95
41 1 0.01
42 2 0.01
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
Found at i:63120733 original size:40 final size:40
Alignment explanation
Indices: 63120672--63120857 Score: 275
Period size: 40 Copynumber: 4.7 Consensus size: 40
63120662 GATGATAACG
* * * *
63120672 GGGTTAAGTCCCGAAGACATTTGTGCTAGTGATTAATTCC
1 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
*
63120712 GGGTTAAGTCCTGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
63120752 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
* * *
63120792 GGGCTAAGTCTCGAAGGCATTTGTGCGAGTTA-TTATATCC
1 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCC
*
63120832 GGGCTAAGTCCCGAAGGCATTTGTGC
1 GGGTTAAGTCCCGAAGGCATTTGTGC
63120858 TAGTGACCAT
Statistics
Matches: 135, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
39 3 0.02
40 132 0.98
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.31
Consensus pattern (40 bp):
GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
Found at i:63120870 original size:40 final size:40
Alignment explanation
Indices: 63120676--63120893 Score: 271
Period size: 40 Copynumber: 5.5 Consensus size: 40
63120666 ATAACGGGGT
* * * * *
63120676 TAAGTCCCGAAGACATTTGTGCTAGTGATTAATTCCGGGT
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
* *
63120716 TAAGTCCTGAAGGCATTTGTGCGAGTTACTAATTCCGGGT
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
63120756 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
* *
63120796 TAAGTCTCGAAGGCATTTGTGCGAGTTA-TTATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
* * *
63120836 TAAGTCCCGAAGGCATTTGTGCTAGTGAC-CATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
* *
63120876 TAAGGCCCGATGGC-TTTG
1 TAAGTCCCGAAGGCATTTG
63120894 CGAGTGGTTA
Statistics
Matches: 161, Mismatches: 15, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
39 7 0.04
40 154 0.96
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
Found at i:63140251 original size:23 final size:23
Alignment explanation
Indices: 63140225--63140332 Score: 119
Period size: 23 Copynumber: 4.7 Consensus size: 23
63140215 CTAATAAGTT
* *
63140225 GAAACGGTCAGCTCTATCGAGCA
1 GAAACAGTAAGCTCTATCGAGCA
** * *
63140248 GAAATGGTAAGCTCTATTGAGCT
1 GAAACAGTAAGCTCTATCGAGCA
63140271 GAAACAGTAAGC-CTTATCGAGCA
1 GAAACAGTAAGCTC-TATCGAGCA
* *
63140294 GAAACAGTAAGCTCTATCAAGCT
1 GAAACAGTAAGCTCTATCGAGCA
63140317 GAAAACAGTAAGCTCT
1 G-AAACAGTAAGCTCT
63140333 TACGAGTTGA
Statistics
Matches: 72, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
22 1 0.01
23 56 0.78
24 15 0.21
ACGTcount: A:0.36, C:0.20, G:0.22, T:0.21
Consensus pattern (23 bp):
GAAACAGTAAGCTCTATCGAGCA
Found at i:63140298 original size:69 final size:71
Alignment explanation
Indices: 63140184--63140320 Score: 163
Period size: 69 Copynumber: 2.0 Consensus size: 71
63140174 CCATGATCGA
* ** * * *
63140184 TAAGCTCCTCTTGAGCTGATAACAGTAAGCTCTAATAAGTTGAAACGGTCAGCTCTATCGAGCAG
1 TAAGCTCCTATTGAGCTGATAACAGTAAGCTCTAATAAGCAGAAACAGTAAGCTCTATCAAGCAG
63140249 AAATGG
66 AAATGG
* * *
63140255 TAAGCT-CTATTGAGCTGA-AACAGTAAGC-CTTATCGAGCAGAAACAGTAAGCTCTATCAAGCT
1 TAAGCTCCTATTGAGCTGATAACAGTAAGCTCTAAT-AAGCAGAAACAGTAAGCTCTATCAAGCA
63140317 GAAA
65 GAAA
63140321 ACAGTAAGCT
Statistics
Matches: 56, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
68 4 0.07
69 35 0.62
70 11 0.20
71 6 0.11
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.24
Consensus pattern (71 bp):
TAAGCTCCTATTGAGCTGATAACAGTAAGCTCTAATAAGCAGAAACAGTAAGCTCTATCAAGCAG
AAATGG
Found at i:63140366 original size:50 final size:46
Alignment explanation
Indices: 63140204--63140338 Score: 150
Period size: 46 Copynumber: 2.9 Consensus size: 46
63140194 TTGAGCTGAT
* * *
63140204 AACAGTAAGCTCTAAT-AAGTTGAAACGGTCAG-CTCTATCGAGCAGA
1 AACAGTAAGCTCT-ATCAAGCTGAAACAGTAAGCCT-TATCGAGCAGA
** **
63140250 AATGGTAAGCTCTATTGAGCTGAAACAGTAAGCCTTATCGAGCAGA
1 AACAGTAAGCTCTATCAAGCTGAAACAGTAAGCCTTATCGAGCAGA
63140296 AACAGTAAGCTCTATCAAGCTGAAAACAGTAAGCTCTTA-CGAG
1 AACAGTAAGCTCTATCAAGCTG-AAACAGTAAGC-CTTATCGAG
63140339 TTGATAAATC
Statistics
Matches: 75, Mismatches: 10, Indels: 7
0.82 0.11 0.08
Matches are distributed among these distances:
45 2 0.03
46 52 0.69
47 17 0.23
48 4 0.05
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.22
Consensus pattern (46 bp):
AACAGTAAGCTCTATCAAGCTGAAACAGTAAGCCTTATCGAGCAGA
Found at i:63147865 original size:28 final size:27
Alignment explanation
Indices: 63147810--63147917 Score: 92
Period size: 28 Copynumber: 3.9 Consensus size: 27
63147800 GTGAGCAAGA
* * *
63147810 ATATGAATGTGACTGGGCCTAACGGGCC
1 ATATAAATGTGATTGGGCCTAA-TGGCC
63147838 ATATAAATGTGATTCGGGCCTAATGGCC
1 ATATAAATGTGATT-GGGCCTAATGGCC
* * * *
63147866 ATATACAGGTGATT-CGACTAATAGGCC
1 ATATAAATGTGATTGGGCCTAAT-GGCC
* * *
63147893 ATATGAATATGATTGGGCTTAATGG
1 ATATAAATGTGATTGGGCCTAATGG
63147918 GCCAAATACA
Statistics
Matches: 63, Mismatches: 14, Indels: 7
0.75 0.17 0.08
Matches are distributed among these distances:
26 6 0.10
27 16 0.25
28 33 0.52
29 8 0.13
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.28
Consensus pattern (27 bp):
ATATAAATGTGATTGGGCCTAATGGCC
Found at i:63150976 original size:36 final size:36
Alignment explanation
Indices: 63150920--63151035 Score: 110
Period size: 36 Copynumber: 3.2 Consensus size: 36
63150910 TACTCTCTGT
** *
63150920 TTTGGTGTGTTTTAGTTGGATTAGCTCTTCA-GAGCCA
1 TTTGGTGTGTTTCGGATGGATTAGCTCTT-ATGAG-CA
*
63150957 -TTGGTGTGTTTCGGATGGATTTGCTCTTATGAGCA
1 TTTGGTGTGTTTCGGATGGATTAGCTCTTATGAGCA
* * * * *
63150992 TTTAGTGTGTTTGGGATGGACTAGGTCTTATGAGGA
1 TTTGGTGTGTTTCGGATGGATTAGCTCTTATGAGCA
*
63151028 TATGGTGT
1 TTTGGTGT
63151036 TTCAGTTGGA
Statistics
Matches: 65, Mismatches: 12, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
35 3 0.05
36 62 0.95
ACGTcount: A:0.16, C:0.09, G:0.32, T:0.42
Consensus pattern (36 bp):
TTTGGTGTGTTTCGGATGGATTAGCTCTTATGAGCA
Found at i:63154110 original size:42 final size:42
Alignment explanation
Indices: 63154051--63154131 Score: 162
Period size: 42 Copynumber: 1.9 Consensus size: 42
63154041 GTCTAACATG
63154051 TAACCGTGAAGATAGTCTTCCATGTGCCATATCCTTATTCGA
1 TAACCGTGAAGATAGTCTTCCATGTGCCATATCCTTATTCGA
63154093 TAACCGTGAAGATAGTCTTCCATGTGCCATATCCTTATT
1 TAACCGTGAAGATAGTCTTCCATGTGCCATATCCTTATT
63154132 GGAATGGGAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.26, C:0.23, G:0.16, T:0.35
Consensus pattern (42 bp):
TAACCGTGAAGATAGTCTTCCATGTGCCATATCCTTATTCGA
Found at i:63156228 original size:12 final size:12
Alignment explanation
Indices: 63156211--63156235 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
63156201 GTTCATAGAA
63156211 CTTAGTGAGTTC
1 CTTAGTGAGTTC
63156223 CTTAGTGAGTTC
1 CTTAGTGAGTTC
63156235 C
1 C
63156236 AGAGCAGATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.20, G:0.24, T:0.40
Consensus pattern (12 bp):
CTTAGTGAGTTC
Found at i:63160558 original size:38 final size:38
Alignment explanation
Indices: 63160507--63160579 Score: 146
Period size: 38 Copynumber: 1.9 Consensus size: 38
63160497 ATTATTTACA
63160507 AGTGTATAATTGTGTTTTACTTTGAATTTGGTAACAAT
1 AGTGTATAATTGTGTTTTACTTTGAATTTGGTAACAAT
63160545 AGTGTATAATTGTGTTTTACTTTGAATTTGGTAAC
1 AGTGTATAATTGTGTTTTACTTTGAATTTGGTAAC
63160580 CATTAAACAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.27, C:0.05, G:0.19, T:0.48
Consensus pattern (38 bp):
AGTGTATAATTGTGTTTTACTTTGAATTTGGTAACAAT
Found at i:63176022 original size:46 final size:46
Alignment explanation
Indices: 63175972--63176097 Score: 198
Period size: 46 Copynumber: 2.7 Consensus size: 46
63175962 TGGTTGAGCA
* *
63175972 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
63176018 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
63176064 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
63176098 GGGGCGGGTT
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 73 1.00
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:63176359 original size:19 final size:20
Alignment explanation
Indices: 63176322--63176359 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
63176312 ATAAGGTGGT
63176322 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
63176342 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
63176360 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:63181277 original size:132 final size:131
Alignment explanation
Indices: 63181037--63181381 Score: 319
Period size: 132 Copynumber: 2.6 Consensus size: 131
63181027 TAAGAATCTT
* ** * *
63181037 TTAAAACGAAGGCAATATTC-GATACTTGGTAATTCAT-GGAATCGTGCCCTAACGCGTTGGGTT
1 TTAAAACGAAGGCAATATTCAG-TATTTGACAATT--TGGGAATCGTGCCCTAATGTGTTGGGTT
* * * * * * * *
63181100 GCAA-TTCTTTGTTTGCTCAAAGTAATCGAAGGTCCCTTTAGAATTTCACCCATGTCTTTTAAAA
63 GTAATTTC-TCGTTTGCTCAAAATAATCAAAGATCCCTTCAAAATTTCACCCATGTCTTCT-AAA
63181164 AATCTC-
126 AATC-CG
* * * *
63181170 TT-AAACGAAGGCGATGTATGA-TATTTGGCAA-TTGACGGAATCGTGCCCTAATGTGTTGGGTT
1 TTAAAACGAAGGCAATAT-TCAGTATTTGACAATTTG--GGAATCGTGCCCTAATGTGTTGGGTT
* * * *
63181232 GTAATTTCTCGTTTGCTTAAAATAATCAAATATCCCTTCAAAATTTCACTCGTGTCTTCTAAAAA
63 GTAATTTCTCGTTTGCTCAAAATAATCAAAGATCCCTTCAAAATTTCACCCATGTCTTCTAAAAA
63181297 TCCG
128 TCCG
* * *
63181301 TTAAAACGAAGGCAATATTCAGTGTTTGACAATTTGGGAATCATGCCCT-ATCGTGCTGGGTTGT
1 TTAAAACGAAGGCAATATTCAGTATTTGACAATTTGGGAATCGTGCCCTAAT-GTGTTGGGTTGT
*
63181365 GATTTCTCGTTTGCTCA
65 AATTTCTCGTTTGCTCA
63181382 GAACAATCGA
Statistics
Matches: 173, Mismatches: 28, Indels: 24
0.77 0.12 0.11
Matches are distributed among these distances:
129 1 0.01
130 3 0.02
131 50 0.29
132 110 0.64
133 9 0.05
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35
Consensus pattern (131 bp):
TTAAAACGAAGGCAATATTCAGTATTTGACAATTTGGGAATCGTGCCCTAATGTGTTGGGTTGTA
ATTTCTCGTTTGCTCAAAATAATCAAAGATCCCTTCAAAATTTCACCCATGTCTTCTAAAAATCC
G
Found at i:63191444 original size:16 final size:16
Alignment explanation
Indices: 63191425--63191456 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
63191415 AATTGTTTTA
63191425 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
*
63191441 TTACATAATTTCACTT
1 TTACAAAATTTCACTT
63191457 ACTCCATTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:63191721 original size:50 final size:50
Alignment explanation
Indices: 63191656--63192046 Score: 374
Period size: 50 Copynumber: 7.8 Consensus size: 50
63191646 ACTGAAGCTC
* * * *
63191656 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
* * * * *
63191706 TCTGGTACACGTAGTAGTCTGCACTTAGTACTACACACATGACATAACCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
* * ** *
63191756 TCTGATACACGTAATAGCCTGCACTTAGTACTACACACGTGATCGAAGTTAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CCTA-TCAA
* * * *
63191808 -C-GGATACGCATAGTAGCCTGCACTTAGTACTACATATGTGACCTATCAA
1 TCTGG-TACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
* * * * * * *
63191857 TCTGGTACATGTAGTAGCGTACACTTAGTACTACACACATGACTTAACCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
* * ** *
63191907 TCTGATACACGTAGTAGCCTACACTTAGTACTACACACGTGATCGAAGTTAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CCTA-TCAA
* ** * * * *
63191959 -CGGGTACATATAGTAGCCTGCACTGAGGACTACACATGCGACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
*
63192008 TCTAGTACACGTAGTAGCCTGCACTTAGTACTACACACG
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACG
63192047 AGTCTCACAA
Statistics
Matches: 267, Mismatches: 66, Indels: 16
0.77 0.19 0.05
Matches are distributed among these distances:
49 6 0.02
50 188 0.70
51 71 0.27
52 2 0.01
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (50 bp):
TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
Found at i:63191935 original size:151 final size:150
Alignment explanation
Indices: 63191661--63192045 Score: 626
Period size: 151 Copynumber: 2.5 Consensus size: 150
63191651 AGCTCTCTGG
63191661 TACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGTCT
1 TACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAG-CT
*
63191726 GCACTTAGTACTACACACATGACATAACCATCTGATACACGTAATAGCCTGCACTTAGTACTACA
65 GCACTTAGTACTACACACATGACATAACCATCTGATACACGTAATAGCCTACACTTAGTACTACA
63191791 CACGTGATCGAAGTTAACGGA
130 CACGTGATCGAAGTTAACGGA
* * *
63191812 TACGCATAGTAGCCTGCACTTAGTACTACATATGTGACCTATCAATCTGGTACATGTAGTAGCGT
1 TACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC-T
* * *
63191877 ACACTTAGTACTACACACATGACTTAACCATCTGATACACGTAGTAGCCTACACTTAGTACTACA
65 GCACTTAGTACTACACACATGACATAACCATCTGATACACGTAATAGCCTACACTTAGTACTACA
*
63191942 CACGTGATCGAAGTTAACGGG
130 CACGTGATCGAAGTTAACGGA
** * * *
63191963 TACATATAGTAGCCTGCACTGAGGACTACACATGCGACCTATCAATCTAGTACACGTAGTAGCCT
1 TACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAG-CT
63192028 GCACTTAGTACTACACAC
65 GCACTTAGTACTACACAC
63192046 GAGTCTCACA
Statistics
Matches: 215, Mismatches: 17, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
150 1 0.00
151 213 0.99
152 1 0.00
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.26
Consensus pattern (150 bp):
TACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCTG
CACTTAGTACTACACACATGACATAACCATCTGATACACGTAATAGCCTACACTTAGTACTACAC
ACGTGATCGAAGTTAACGGA
Found at i:63191973 original size:101 final size:101
Alignment explanation
Indices: 63191860--63192046 Score: 250
Period size: 101 Copynumber: 1.9 Consensus size: 101
63191850 CTATCAATCT
* * * * * * *
63191860 GGTACATGTAGTAGCGTACACTTAGTACTACACACATGACTTAACCATCT-GATACACGTAGTAG
1 GGTACATATAGTAGCCTACACTGAGGACTACACACACGACCTAACAATCTAG-TACACGTAGTAG
63191924 CCTACACTTAGTACTACACACGTGATCGAAGTTAACG
65 CCTACACTTAGTACTACACACGTGATCGAAGTTAACG
* ** *
63191961 GGTACATATAGTAGCCTGCACTGAGGACTACACATGCGACCTATCAATCTAGTACACGTAGTAGC
1 GGTACATATAGTAGCCTACACTGAGGACTACACACACGACCTAACAATCTAGTACACGTAGTAGC
*
63192026 CTGCACTTAGTACTACACACG
66 CTACACTTAGTACTACACACG
63192047 AGTCTCACAA
Statistics
Matches: 73, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
101 72 0.99
102 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (101 bp):
GGTACATATAGTAGCCTACACTGAGGACTACACACACGACCTAACAATCTAGTACACGTAGTAGC
CTACACTTAGTACTACACACGTGATCGAAGTTAACG
Found at i:63192430 original size:18 final size:20
Alignment explanation
Indices: 63192399--63192445 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
63192389 AAGAATAGGT
*
63192399 TATATCATCAAAATAATCACA
1 TATAT-ATCAAATTAATCACA
*
63192420 TA-ATATCAAATTATTCACA
1 TATATATCAAATTAATCACA
63192439 TATATAT
1 TATATAT
63192446 ACTTACAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.36
Consensus pattern (20 bp):
TATATATCAAATTAATCACA
Found at i:63197054 original size:26 final size:27
Alignment explanation
Indices: 63197003--63197217 Score: 249
Period size: 27 Copynumber: 8.1 Consensus size: 27
63196993 AGCCATACAC
* *
63197003 CCGAAATACCCCTGTAGGATAAAATTA
1 CCGAAATACCCCTGTAGGGTAGAATTA
*
63197030 CCGAAATA-CCTTGTAGGGTAGAATTA
1 CCGAAATACCCCTGTAGGGTAGAATTA
*
63197056 CTGAAATACCCCTGTA-GGTAGAATTA
1 CCGAAATACCCCTGTAGGGTAGAATTA
63197082 CCGAAATACCCCTGTAGGGTAGAATTA
1 CCGAAATACCCCTGTAGGGTAGAATTA
* *
63197109 TC-AGAATACCCCTATAGGGTAGAATTA
1 CCGA-AATACCCCTGTAGGGTAGAATTA
*
63197136 CTGAAATACCCCTGTAGGGTAGAATTA
1 CCGAAATACCCCTGTAGGGTAGAATTA
** * *
63197163 CTAAAATACCCCTGTATGGTGGAATTA
1 CCGAAATACCCCTGTAGGGTAGAATTA
* * * * *
63197190 CTGAGATA-CCTTGTGGGGTAAAATTA
1 CCGAAATACCCCTGTAGGGTAGAATTA
63197216 CC
1 CC
63197218 ATTTTGCCTC
Statistics
Matches: 162, Mismatches: 22, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
26 62 0.38
27 99 0.61
28 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.26
Consensus pattern (27 bp):
CCGAAATACCCCTGTAGGGTAGAATTA
Found at i:63197199 original size:81 final size:80
Alignment explanation
Indices: 63197006--63197189 Score: 255
Period size: 80 Copynumber: 2.3 Consensus size: 80
63196996 CATACACCCG
* * * * *
63197006 AAATACCCCTGTAGGATAAAATTA-CCGAAATA-CCTTGTAGGGTAGAATTACTGAAATACCCCT
1 AAATACCCCTGTAGGGTAGAATTATCAG-AATACCCCTATAGGGTAGAATTACTGAAATACCCCT
*
63197069 GTAGGTAGAATTACCG
65 GTAGGTAGAATTACCA
63197085 AAATACCCCTGTAGGGTAGAATTATCAGAATACCCCTATAGGGTAGAATTACTGAAATACCCCTG
1 AAATACCCCTGTAGGGTAGAATTATCAGAATACCCCTATAGGGTAGAATTACTGAAATACCCCTG
*
63197150 TAGGGTAGAATTACTA
66 TA-GGTAGAATTACCA
* *
63197166 AAATACCCCTGTATGGTGGAATTA
1 AAATACCCCTGTAGGGTAGAATTA
63197190 CTGAGATACC
Statistics
Matches: 93, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
79 26 0.28
80 34 0.37
81 33 0.35
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (80 bp):
AAATACCCCTGTAGGGTAGAATTATCAGAATACCCCTATAGGGTAGAATTACTGAAATACCCCTG
TAGGTAGAATTACCA
Found at i:63197687 original size:22 final size:22
Alignment explanation
Indices: 63197657--63197708 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
63197647 ATTATAGCTT
*
63197657 TGTGTCAACCT-ACATATGGCTC
1 TGTGCCAACCTGA-ATATGGCTC
* *
63197679 TGTGCCAACCTGATTATGGCTG
1 TGTGCCAACCTGAATATGGCTC
63197701 TGTGCCAA
1 TGTGCCAA
63197709 ACGTATTTGC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
22 25 0.96
23 1 0.04
ACGTcount: A:0.21, C:0.25, G:0.23, T:0.31
Consensus pattern (22 bp):
TGTGCCAACCTGAATATGGCTC
Found at i:63197967 original size:27 final size:26
Alignment explanation
Indices: 63197866--63197967 Score: 123
Period size: 27 Copynumber: 3.8 Consensus size: 26
63197856 ATTCTGTTAA
* * *
63197866 GTGGCTTTGCCACATTATCTATTTCTG
1 GTGGCTCTGCCACAATATCT-GTTCTG
*
63197893 GTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTCTGCCAC-AATATCTGTTCTG
63197920 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGT-TCTG
* *
63197947 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
63197968 ATAACTGAGC
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
26 9 0.13
27 52 0.78
28 6 0.09
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.36
Consensus pattern (26 bp):
GTGGCTCTGCCACAATATCTGTTCTG
Found at i:63198150 original size:31 final size:31
Alignment explanation
Indices: 63198104--63198206 Score: 143
Period size: 31 Copynumber: 3.3 Consensus size: 31
63198094 TTGCATTCAT
*
63198104 ATTCTGATTTTTGATTTTGTTACCTGATACTG
1 ATTCTGA-TTTTGATTCTGTTACCTGATACTG
63198136 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
* * * * *
63198167 ATTCTAATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
63198198 ATTCTGATT
1 ATTCTGATT
63198207 CTAGTTCCGA
Statistics
Matches: 64, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
31 57 0.89
32 7 0.11
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.50
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:63198184 original size:6 final size:6
Alignment explanation
Indices: 63198127--63198208 Score: 60
Period size: 6 Copynumber: 13.3 Consensus size: 6
63198117 ATTTTGTTAC
* * * *
63198127 CTGATA CTGATT CTGATT TTGATT CTG-TT ACCTGATA CTGATT CTAATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT
* *
63198176 CTGATT CTG-TCAC CTAATT CTGATT CTGATT CT
1 CTGATT CTGAT--T CTGATT CTGATT CTGATT CT
63198209 AGTTCCGATA
Statistics
Matches: 59, Mismatches: 11, Indels: 12
0.72 0.13 0.15
Matches are distributed among these distances:
5 3 0.05
6 49 0.83
7 5 0.08
8 2 0.03
ACGTcount: A:0.21, C:0.20, G:0.13, T:0.46
Consensus pattern (6 bp):
CTGATT
Found at i:63200197 original size:27 final size:27
Alignment explanation
Indices: 63200166--63200347 Score: 220
Period size: 27 Copynumber: 6.7 Consensus size: 27
63200156 TTAGTTTACC
** *
63200166 AAATTACCAAAATACCCCTATTTTGTA
1 AAATTACCAAAATACCCCTGGTTTATA
* * *
63200193 AAATTACTAAAATACCCTTAGTTTATA
1 AAATTACCAAAATACCCCTGGTTTATA
* *
63200220 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTATA
* *
63200247 AAATTACCAAAATACCCATGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTATA
*
63200274 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTATA
* * * *
63200301 AAATTACTAAAATACCCTTTGTGTATA
1 AAATTACCAAAATACCCCTGGTTTATA
*
63200328 AAATTACCGAAATACCCCTG
1 AAATTACCAAAATACCCCTG
63200348 TAGGGTAAAA
Statistics
Matches: 130, Mismatches: 25, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 130 1.00
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTATA
Found at i:63200231 original size:54 final size:54
Alignment explanation
Indices: 63200156--63200347 Score: 276
Period size: 54 Copynumber: 3.6 Consensus size: 54
63200146 TTAGAATACT
* **
63200156 TTAGTTTACCAAATTACCAAAATACCCCTATTTTGTAAAATTACTAAAATACCC
1 TTAGTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCC
* * *
63200210 TTAGTTTATAAAATCACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC
1 TTAGTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCC
* *
63200264 ATGGTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCC
1 TTAGTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCC
* * * *
63200318 TTTGTGTATAAAATTACCGAAATACCCCTG
1 TTAGTTTACAAAATTACCAAAATACCCCTG
63200348 TAGGGTAAAA
Statistics
Matches: 122, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 122 1.00
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (54 bp):
TTAGTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCC
Found at i:63200356 original size:27 final size:27
Alignment explanation
Indices: 63200273--63200523 Score: 222
Period size: 27 Copynumber: 9.3 Consensus size: 27
63200263 CATGGTTTAC
* **
63200273 AAAATTACCAAAATACCCCTGGT-TTGT
1 AAAATTACCGAAATACCCCT-GTAGGGT
** * **
63200300 AAAATTACTAAAATACCCTTTGT-GTAT
1 AAAATTACCGAAATACCC-CTGTAGGGT
63200327 AAAATTACCGAAATACCCCTGTAGGGT
1 AAAATTACCGAAATACCCCTGTAGGGT
**
63200354 AAAATTATTGAAATACCCCTGTAGGGT
1 AAAATTACCGAAATACCCCTGTAGGGT
*
63200381 AGAATTACCGAAATACCCCTGTAGGGT
1 AAAATTACCGAAATACCCCTGTAGGGT
* * *
63200408 AGAATTATCGCAATACCCCTGTAGGGT
1 AAAATTACCGAAATACCCCTGTAGGGT
* *
63200435 AGAATTCCCGAAATACCCCTGTAGGGT
1 AAAATTACCGAAATACCCCTGTAGGGT
* * *
63200462 AGAATTA-CTAAAGTACCCCGGTAGGGT
1 AAAATTACCGAAA-TACCCCTGTAGGGT
** * * * *
63200489 GGAATTACTGAGATA-CCTTGTGGGGT
1 AAAATTACCGAAATACCCCTGTAGGGT
63200515 AAAATTACC
1 AAAATTACC
63200524 ATTTTGCCCC
Statistics
Matches: 188, Mismatches: 32, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
26 21 0.11
27 164 0.87
28 3 0.02
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.27
Consensus pattern (27 bp):
AAAATTACCGAAATACCCCTGTAGGGT
Found at i:63200356 original size:54 final size:53
Alignment explanation
Indices: 63200166--63200479 Score: 238
Period size: 54 Copynumber: 5.8 Consensus size: 53
63200156 TTAGTTTACC
* *** *
63200166 AAATTACCAAAATACCCCTATTTTGTAAAATTACTAAAATACCCTTAGTTTATA
1 AAATTACCAAAATACCCCTGTAGGGTAAAATTACTAAAATACCCTT-GTGTATA
* ** * * * *
63200220 AAATCACCAAAATACCCCTGGT-TTGTAAAATTACCAAAATACCCATGGTTTACA
1 AAATTACCAAAATACCCCT-GTAGGGTAAAATTACTAAAATACCC-TTGTGTATA
**
63200274 AAATTACCAAAATACCCCTGGT-TTGTAAAATTACTAAAATACCCTTTGTGTATA
1 AAATTACCAAAATACCCCT-GTAGGGTAAAATTACTAAAATACCC-TTGTGTATA
* * * * **
63200328 AAATTACCGAAATACCCCTGTAGGGTAAAATTATTGAAATACCCCTGTAGGGTA
1 AAATTACCAAAATACCCCTGTAGGGTAAAATTACTAAAATACCCTTGT-GTATA
* * * ** * **
63200382 GAATTACCGAAATACCCCTGTAGGGTAGAATTA-TCGCAATACCCCTGTAGGGTA
1 AAATTACCAAAATACCCCTGTAGGGTAAAATTACT-AAAATACCCTTGT-GTATA
* * * * *
63200436 GAATTCCCGAAATACCCCTGTAGGGTAGAATTACTAAAGTACCC
1 AAATTACCAAAATACCCCTGTAGGGTAAAATTACTAAAATACCC
63200480 CGGTAGGGTG
Statistics
Matches: 228, Mismatches: 26, Indels: 12
0.86 0.10 0.05
Matches are distributed among these distances:
53 6 0.03
54 219 0.96
55 3 0.01
ACGTcount: A:0.38, C:0.21, G:0.13, T:0.28
Consensus pattern (53 bp):
AAATTACCAAAATACCCCTGTAGGGTAAAATTACTAAAATACCCTTGTGTATA
Found at i:63200358 original size:81 final size:80
Alignment explanation
Indices: 63200166--63200455 Score: 208
Period size: 81 Copynumber: 3.6 Consensus size: 80
63200156 TTAGTTTACC
* *** * * * * *
63200166 AAATTACCAAAATACCCCTATTTTGTAAAATTACTAAAATACCCTTAGTTTATAAAATCACCAAA
1 AAATTACCAAAATACCCCTGTAGGGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAA
* *
63200231 ATACCCCTGGTTTGTA
66 ATA-CCCTTGTGTGTA
* ** *
63200247 AAATTACCAAAATACCCATG--GTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTA
1 AAATTACCAAAATACCCCTGTAGGGT--AAAATTACCAAAATACCCCTGGTTTGTAAAATTACCA
*
63200310 AAATACCCTTTGTGTATA
64 AAATACCC-TTGTGTGTA
* *** ** * *
63200328 AAATTACCGAAATACCCCTGTAGGGTAAAATTATTGAAATACCCCT-GTAGGGTAGAATTACCGA
1 AAATTACCAAAATACCCCTGTAGGGTAAAATTACCAAAATACCCCTGGT-TTGTAAAATTACCAA
* *
63200392 AATACCCCTGTAGGGTA
65 AATACCCTTGT-GTGTA
* * ** * * *
63200409 GAATTATCGCAATACCCCTGTAGGGTAGAATTCCCGAAATACCCCTG
1 AAATTACCAAAATACCCCTGTAGGGTAAAATTACCAAAATACCCCTG
63200456 TAGGGTAGAA
Statistics
Matches: 166, Mismatches: 35, Indels: 15
0.77 0.16 0.07
Matches are distributed among these distances:
79 2 0.01
80 8 0.05
81 154 0.93
83 2 0.01
ACGTcount: A:0.38, C:0.21, G:0.13, T:0.28
Consensus pattern (80 bp):
AAATTACCAAAATACCCCTGTAGGGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAA
ATACCCTTGTGTGTA
Found at i:63200371 original size:108 final size:108
Alignment explanation
Indices: 63200159--63200360 Score: 307
Period size: 108 Copynumber: 1.9 Consensus size: 108
63200149 GAATACTTTA
* * *
63200159 GTTTACCAAATTACCAAAATACCCCTATTTTGTAAAATTACTAAAATACCCTTAGTTTATAAAAT
1 GTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTAGTGTATAAAAT
**
63200224 CACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCATG
66 CACCAAAATACCCCTGGTGGGTAAAATTACCAAAATACCCATG
* *
63200267 GTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTTGTGTATAAAAT
1 GTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTAGTGTATAAAAT
* *
63200332 TACCGAAATACCCCT-GTAGGGTAAAATTA
66 CACCAAAATACCCCTGGT-GGGTAAAATTA
63200361 TTGAAATACC
Statistics
Matches: 84, Mismatches: 9, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
107 2 0.02
108 82 0.98
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (108 bp):
GTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTAGTGTATAAAAT
CACCAAAATACCCCTGGTGGGTAAAATTACCAAAATACCCATG
Found at i:63200456 original size:81 final size:81
Alignment explanation
Indices: 63200329--63200523 Score: 250
Period size: 81 Copynumber: 2.4 Consensus size: 81
63200319 TTGTGTATAA
**
63200329 AATTACCGAAATACCCCTGTAGGGTAAAATTATTGAAATACCCCTGTAGGGTAGAATTACCGAAA
1 AATTACCGAAATACCCCTGTAGGGTAAAATTACCGAAATACCCCTGTAGGGTAGAATTA-CGAAA
*
63200394 -TACCCCTGTAGGGTAG
65 GTACCCCGGTAGGGTAG
* * * * *
63200410 AATTATCGCAATACCCCTGTAGGGTAGAATTCCCGAAATACCCCTGTAGGGTAGAATTACTAAAG
1 AATTACCGAAATACCCCTGTAGGGTAAAATTACCGAAATACCCCTGTAGGGTAGAATTACGAAAG
*
63200475 TACCCCGGTAGGGTGG
66 TACCCCGGTAGGGTAG
* * * *
63200491 AATTACTGAGATA-CCTTGTGGGGTAAAATTACC
1 AATTACCGAAATACCCCTGTAGGGTAAAATTACC
63200524 ATTTTGCCCC
Statistics
Matches: 96, Mismatches: 17, Indels: 3
0.83 0.15 0.03
Matches are distributed among these distances:
80 20 0.21
81 76 0.79
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (81 bp):
AATTACCGAAATACCCCTGTAGGGTAAAATTACCGAAATACCCCTGTAGGGTAGAATTACGAAAG
TACCCCGGTAGGGTAG
Done.