Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 184 of 295
Found at i:63200480 original size:54 final size:53
Alignment explanation
Indices: 63200329--63200522 Score: 246
Period size: 54 Copynumber: 3.6 Consensus size: 53
63200319 TTGTGTATAA
* *
63200329 AATTACCGAAATACCCCTGTAGGGTAAAATTATTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACT-AAATACCCCTGTAGGGTAG
**
63200383 AATTACCGAAATACCCCTGTAGGGTAGAATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTA-CTAAATACCCCTGTAGGGTAG
* * *
63200437 AATTCCCGAAATACCCCTGTAGGGTAGAATTACTAAAGTACCCCGGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACTAAA-TACCCCTGTAGGGTAG
* * * * *
63200491 AATTACTGAGATA-CCTTGTGGGGTAAAATTAC
1 AATTACCGAAATACCCCTGTAGGGTAGAATTAC
63200523 CATTTTGCCC
Statistics
Matches: 123, Mismatches: 15, Indels: 5
0.86 0.10 0.03
Matches are distributed among these distances:
53 19 0.15
54 104 0.85
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (53 bp):
AATTACCGAAATACCCCTGTAGGGTAGAATTACTAAATACCCCTGTAGGGTAG
Found at i:63200983 original size:22 final size:22
Alignment explanation
Indices: 63200955--63201014 Score: 68
Period size: 22 Copynumber: 2.7 Consensus size: 22
63200945 GCCTTCTGAT
* *
63200955 TATGGCTTTGTGTCAACCTACA
1 TATGGCTCTGTGCCAACCTACA
63200977 TATGGCTCTGTGCCAACCTA-A
1 TATGGCTCTGTGCCAACCTACA
* *
63200998 TTATGGATGTGTGCCAA
1 -TATGGCTCTGTGCCAA
63201015 ACGTATTTGC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
21 1 0.03
22 32 0.97
ACGTcount: A:0.23, C:0.22, G:0.22, T:0.33
Consensus pattern (22 bp):
TATGGCTCTGTGCCAACCTACA
Found at i:63201203 original size:27 final size:27
Alignment explanation
Indices: 63201173--63201274 Score: 116
Period size: 27 Copynumber: 3.8 Consensus size: 27
63201163 ATTCTGTTAA
* *
63201173 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
63201200 GTGGCTATGCCACAAATATTTG-TTCTG
1 GTGGCTCTGCCAC-AATATCTGTTTCTG
* *
63201227 GTGGCTCTGCCACAATATTTGTATCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
63201254 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
63201275 ATAACTGAGC
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
26 8 0.12
27 51 0.78
28 6 0.09
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.38
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTTTCTG
Found at i:63201449 original size:6 final size:6
Alignment explanation
Indices: 63201434--63201521 Score: 81
Period size: 6 Copynumber: 14.3 Consensus size: 6
63201424 ATTCTGTTAC
* * *
63201434 CTGATA CTGATT CTGATT TTGATT CTG-TT ACCTGATA CTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT
* *
63201483 CTGATT CTG-TCAC CTAATT CTGATT CTGATT CTGATT CT
1 CTGATT CTGAT--T CTGATT CTGATT CTGATT CTGATT CT
63201522 AGTTTTGATA
Statistics
Matches: 67, Mismatches: 9, Indels: 12
0.76 0.10 0.14
Matches are distributed among these distances:
5 3 0.04
6 57 0.85
7 5 0.07
8 2 0.03
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.47
Consensus pattern (6 bp):
CTGATT
Found at i:63201506 original size:37 final size:31
Alignment explanation
Indices: 63201424--63201521 Score: 160
Period size: 31 Copynumber: 3.2 Consensus size: 31
63201414 CTGATTTTTT
*
63201424 ATTCTGTTACCTGATACTGATTCTGATTTTG
1 ATTCTGTTACCTGATACTGATTCTGATTCTG
63201455 ATTCTGTTACCTGATACTGATTCTGATTCTG
1 ATTCTGTTACCTGATACTGATTCTGATTCTG
* * *
63201486 ATTCTGTCACCTAATTCTGATTCTGATTCTG
1 ATTCTGTTACCTGATACTGATTCTGATTCTG
63201517 ATTCT
1 ATTCT
63201522 AGTTTTGATA
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.47
Consensus pattern (31 bp):
ATTCTGTTACCTGATACTGATTCTGATTCTG
Found at i:63205142 original size:26 final size:26
Alignment explanation
Indices: 63205113--63205185 Score: 128
Period size: 26 Copynumber: 2.8 Consensus size: 26
63205103 GAGGAAGTGC
63205113 AAAAGGGCTTATGCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCTAGTTTACCG
* *
63205139 AAAAGGGCTTATGCCCCAGTTTACTG
1 AAAAGGGCTTATGCCCTAGTTTACCG
63205165 AAAAGGGCTTATGCCCTAGTT
1 AAAAGGGCTTATGCCCTAGTT
63205186 ATTAAAAGAG
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCTAGTTTACCG
Found at i:63207601 original size:50 final size:50
Alignment explanation
Indices: 63207533--63207727 Score: 196
Period size: 50 Copynumber: 3.9 Consensus size: 50
63207523 CTTTGGTATG
* *
63207533 CATAGTAGCCCGCACTTAGTACTACACATCCGACCTATCAATCTGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACATCCGACCTATCAATCTGATACA
* *** * * *
63207583 CGTAGTAGCCTGCACTTAGTACTACACAAGTGACTTAACCATCTGATACA
1 CATAGTAGCCTGCACTTAGTACTACACATCCGACCTATCAATCTGATACA
* ** * * *
63207633 CATAGTAGCCTGCACTTAGTACTACACA-CGTGATCGAAGTTAAAC-GACACA
1 CATAGTAGCCTGCACTTAGTACTACACATC-CGA-CCTA-TCAATCTGATACA
* *
63207684 CATAGTAGCCTACACTTAGTACTACACATGCGACCTATCAATCT
1 CATAGTAGCCTGCACTTAGTACTACACATCCGACCTATCAATCT
63207728 AGTATCCGAA
Statistics
Matches: 115, Mismatches: 25, Indels: 10
0.77 0.17 0.07
Matches are distributed among these distances:
49 4 0.03
50 73 0.63
51 36 0.31
52 2 0.02
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (50 bp):
CATAGTAGCCTGCACTTAGTACTACACATCCGACCTATCAATCTGATACA
Found at i:63207817 original size:50 final size:50
Alignment explanation
Indices: 63207753--63207979 Score: 269
Period size: 50 Copynumber: 4.5 Consensus size: 50
63207743 CGGGTACGCA
* * *
63207753 TAGTAGCTTGCACTTAGTACTACACAAGTGACTTAACCATCTGATACACG
1 TAGTAGCCTACACTTAGTACTACACAAGTGACTTAACAATCTGATACACG
* * * * *
63207803 TAGTAGCCTACACTTAGTACTACACATGCGACCTATCAATCTGGTACACG
1 TAGTAGCCTACACTTAGTACTACACAAGTGACTTAACAATCTGATACACG
* *
63207853 TAGTAGCCTGCACTTAGTACTACACAAGTTACTTAACAATCTGATACACG
1 TAGTAGCCTACACTTAGTACTACACAAGTGACTTAACAATCTGATACACG
* * * *
63207903 TAGTAGCCTACACTTAGTACTACACACGTGA-TCGAAGCTAAT-GGATACACA
1 TAGTAGCCTACACTTAGTACTACACAAGTGACT-TAA-C-AATCTGATACACG
**
63207954 TAGTAGCCTGTACTTAGTACTACACA
1 TAGTAGCCTACACTTAGTACTACACA
63207980 TGTAACCTAT
Statistics
Matches: 151, Mismatches: 23, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
49 1 0.01
50 115 0.76
51 32 0.21
52 3 0.02
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.27
Consensus pattern (50 bp):
TAGTAGCCTACACTTAGTACTACACAAGTGACTTAACAATCTGATACACG
Found at i:63208012 original size:268 final size:268
Alignment explanation
Indices: 63207535--63208247 Score: 992
Period size: 268 Copynumber: 2.7 Consensus size: 268
63207525 TTGGTATGCA
* *
63207535 TAGTAGCCCGCACTTAGTACTACACATCCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTT
* *
63207600 AGTACTACACAAGTGACTTAACCATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTG
66 AGTACTACACAAGTGACTTAACAATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTG
* *
63207665 ATCGAAGTTAAACGACACACATAGTAGCCTACACTTAGTACTACACATGCGACCTATCAATCTAG
131 ATCGAAGCTAAACGACACACATAGTAGCCTACACTTAGTACTACACATGCAACCTATCAATCTAG
*
63207730 TATCCGAAGTTAACGGGTACGCATAGTAGCTTGCACTTAGTACTACACAAGTGACTTAACCATCT
196 TATCCGAAGTTAACGGGTACGCATAGTAGCCTGCACTTAGTACTACACAAGTGACTTAACCATCT
63207795 GATACACG
261 GATACACG
*
63207803 TAGTAGCCTACACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTT
* *
63207868 AGTACTACACAAGTTACTTAACAATCTGATACACGTAGTAGCCTACACTTAGTACTACACACGTG
66 AGTACTACACAAGTGACTTAACAATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTG
** * ** * *
63207933 ATCGAAGCTAATGGATACACATAGTAGCCTGTACTTAGTACTACACATGTAACCTATCAATCTGG
131 ATCGAAGCTAAACGACACACATAGTAGCCTACACTTAGTACTACACATGCAACCTATCAATCTAG
* *
63207998 TA-CATGAAGTTAACGGGTACGCATAGTAGCCTGTACTTAGTACTACACAAGTGACTTAACCATC
196 TATC-CGAAGTTAACGGGTACGCATAGTAGCCTGCACTTAGTACTACACAAGTGACTTAACCATC
63208062 TGATACACG
260 TGATACACG
** * *
63208071 TAGTAGCCTGCACTTAGTACTACACACCTGATCGAAGT-T-AA-C-GGATACGCATAGTAGCCTG
1 TAGTAGCCTGCACTTAGTACTACACA--TG--CGACCTATCAATCTGG-TACACGTAGTAGCCTG
* * * * *
63208132 CACTTAGTACTACACAAGCGACCTATCAATCTGGTACACGTAGTAGCTTGCACTTAGTACTACAC
61 CACTTAGTACTACACAAGTGACTTAACAATCTGATACACGTAGTAGCCTGCACTTAGTACTACAC
* * * * * *
63208197 AAGTGAAT-TAA-C-CATCTGATACACGTAGTAGCCTACACTTAGTACTACACA
126 ACGTG-ATCGAAGCTAAAC-GACACACATAGTAGCCTACACTTAGTACTACACA
63208248 CGTGATCGAA
Statistics
Matches: 399, Mismatches: 38, Indels: 16
0.88 0.08 0.04
Matches are distributed among these distances:
267 3 0.01
268 306 0.77
269 79 0.20
270 6 0.02
271 1 0.00
272 4 0.01
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (268 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTT
AGTACTACACAAGTGACTTAACAATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTG
ATCGAAGCTAAACGACACACATAGTAGCCTACACTTAGTACTACACATGCAACCTATCAATCTAG
TATCCGAAGTTAACGGGTACGCATAGTAGCCTGCACTTAGTACTACACAAGTGACTTAACCATCT
GATACACG
Found at i:63208080 original size:50 final size:50
Alignment explanation
Indices: 63208021--63208508 Score: 376
Period size: 50 Copynumber: 9.7 Consensus size: 50
63208011 CGGGTACGCA
* * *
63208021 TAGTAGCCTGTACTTAGTACTACACAAGTGACTTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACTTAACAATCTGATACACG
* * * * * *
63208071 TAGTAGCCTGCACTTAGTACTACACACCTGA-TCGAAGTTAA-CGGATACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACT-TAA--CAATCTGATACACG
* * * * *
63208122 TAGTAGCCTGCACTTAGTACTACACAAGCGACCTATCAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACTTAACAATCTGATACACG
* * * *
63208172 TAGTAGCTTGCACTTAGTACTACACAAGTGAATTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACTTAACAATCTGATACACG
* * * * * *
63208222 TAGTAGCCTACACTTAGTACTACACACGTGA-TCGAAGTTAA-CGGATACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACT-TAA--CAATCTGATACACG
* * * ** * * *
63208273 AAGTAGCCTGCACTTAGAACTACACATGCAACCTATCAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACTTAACAATCTGATACACG
* * * *
63208323 TAGTAGCCTTCACTTAGTACAACACACGTGACTTAACCATCTGATACACA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACTTAACAATCTGATACACG
* * * * * * *
63208373 TAGTAGCCTACCCTTAGTACTACACACGTGA-TCAA-AGTTAACGGGTACACA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACTTAACA---ATCTGATACACG
* ** * * *
63208424 TAGTAGCCTGCACTTAGTACTACACATGCCACCTATCAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACTTAACAATCTGATACACG
* * * *
63208474 TAGTATCCTACACTTACTACTACACATGTGACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACTTA
63208509 TAATGAATCA
Statistics
Matches: 336, Mismatches: 87, Indels: 30
0.74 0.19 0.07
Matches are distributed among these distances:
49 9 0.03
50 219 0.65
51 104 0.31
52 3 0.01
53 1 0.00
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACTTAACAATCTGATACACG
Found at i:63208178 original size:101 final size:102
Alignment explanation
Indices: 63208003--63208504 Score: 423
Period size: 101 Copynumber: 5.0 Consensus size: 102
63207993 TCTGGTACAT
* * * * * * *
63208003 GAAGTTAACGGGTACGCATAGTAGCCTGTACTTAGTACTACACAAGTGACTTAACCATCTGATAC
1 GAAGTTAACGGATACACATAGTAGCCTGCACTTAGTACTACACAAGTGACCTATCAATCTGGTAC
*
63208068 ACGTAGTAGCCTGCACTTAGTACTACACACCTG-ATC
66 ACGTAGTAGCCTGCACTTAGTACTACACACGTGAATC
* *
63208104 GAAGTTAACGGATACGCATAGTAGCCTGCACTTAGTACTACACAAGCGACCTATCAATCTGGTAC
1 GAAGTTAACGGATACACATAGTAGCCTGCACTTAGTACTACACAAGTGACCTATCAATCTGGTAC
* *
63208169 ACGTAGTAGCTTGCACTTAGTACTACACAAGTGAAT-
66 ACGTAGTAGCCTGCACTTAGTACTACACACGTGAATC
* ** * * * * * ** *
63208205 TAA-CCATCTGATACACGTAGTAGCCTACACTTAGTACTACACACGTGATCGAAGTTAA-C-GGA
1 GAAGTTAACGGATACACATAGTAGCCTGCACTTAGTACTACACAAGTGA-CCTA-TCAATCTGG-
* ** *
63208267 TACGCAAAGTAGCCTGCACTTAGAACTACACA--TGCAA-C
63 TACACGTAGTAGCCTGCACTTAGTACTACACACGTG-AATC
** * * * * * * * * *
63208305 CTA-TCAATCTGG-TACACGTAGTAGCCTTCACTTAGTACAACACACGTGACTTAACCATCTGAT
1 GAAGTTAA-C-GGATACACATAGTAGCCTGCACTTAGTACTACACAAGTGACCTATCAATCTGGT
* * *
63208368 ACACATAGTAGCCTACCCTTAGTACTACACACGTG-ATC
64 ACACGTAGTAGCCTGCACTTAGTACTACACACGTGAATC
* * * **
63208406 AAAGTTAACGGGTACACATAGTAGCCTGCACTTAGTACTACACATGCCACCTATCAATCTGGTAC
1 GAAGTTAACGGATACACATAGTAGCCTGCACTTAGTACTACACAAGTGACCTATCAATCTGGTAC
* * * *
63208471 ACGTAGTATCCTACACTTACTACTACACATGTGA
66 ACGTAGTAGCCTGCACTTAGTACTACACACGTGA
63208505 CTTATAATGA
Statistics
Matches: 321, Mismatches: 64, Indels: 31
0.77 0.15 0.07
Matches are distributed among these distances:
99 3 0.01
100 76 0.24
101 231 0.72
102 11 0.03
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (102 bp):
GAAGTTAACGGATACACATAGTAGCCTGCACTTAGTACTACACAAGTGACCTATCAATCTGGTAC
ACGTAGTAGCCTGCACTTAGTACTACACACGTGAATC
Found at i:63208216 original size:151 final size:151
Alignment explanation
Indices: 63208021--63208508 Score: 778
Period size: 151 Copynumber: 3.2 Consensus size: 151
63208011 CGGGTACGCA
* *
63208021 TAGTAGCCTGTACTTAGTACTACACAAGTGACTTAACCATCTGATACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACAAGTGACTTAACCATCTGATACACGTAGTAGCCTACACTT
* *
63208086 AGTACTACACACCTGATCGAAGTTAACGGATACGCATAGTAGCCTGCACTTAGTACTACACAAGC
66 AGTACTACACACGTGATCGAAGTTAACGGATACGCATAGTAGCCTGCACTTAGTACTACACATGC
*
63208151 GACCTATCAATCTGGTACACG
131 AACCTATCAATCTGGTACACG
* *
63208172 TAGTAGCTTGCACTTAGTACTACACAAGTGAATTAACCATCTGATACACGTAGTAGCCTACACTT
1 TAGTAGCCTGCACTTAGTACTACACAAGTGACTTAACCATCTGATACACGTAGTAGCCTACACTT
* *
63208237 AGTACTACACACGTGATCGAAGTTAACGGATACGCAAAGTAGCCTGCACTTAGAACTACACATGC
66 AGTACTACACACGTGATCGAAGTTAACGGATACGCATAGTAGCCTGCACTTAGTACTACACATGC
63208302 AACCTATCAATCTGGTACACG
131 AACCTATCAATCTGGTACACG
* * * * *
63208323 TAGTAGCCTTCACTTAGTACAACACACGTGACTTAACCATCTGATACACATAGTAGCCTACCCTT
1 TAGTAGCCTGCACTTAGTACTACACAAGTGACTTAACCATCTGATACACGTAGTAGCCTACACTT
* * *
63208388 AGTACTACACACGTGATCAAAGTTAACGGGTACACATAGTAGCCTGCACTTAGTACTACACATGC
66 AGTACTACACACGTGATCGAAGTTAACGGATACGCATAGTAGCCTGCACTTAGTACTACACATGC
*
63208453 CACCTATCAATCTGGTACACG
131 AACCTATCAATCTGGTACACG
* * * *
63208474 TAGTATCCTACACTTACTACTACACATGTGACTTA
1 TAGTAGCCTGCACTTAGTACTACACAAGTGACTTA
63208509 TAATGAATCA
Statistics
Matches: 310, Mismatches: 27, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
151 310 1.00
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (151 bp):
TAGTAGCCTGCACTTAGTACTACACAAGTGACTTAACCATCTGATACACGTAGTAGCCTACACTT
AGTACTACACACGTGATCGAAGTTAACGGATACGCATAGTAGCCTGCACTTAGTACTACACATGC
AACCTATCAATCTGGTACACG
Found at i:63208902 original size:19 final size:20
Alignment explanation
Indices: 63208874--63208920 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
63208864 AAGAACAGGT
63208874 TATATCATCAAAATAATCACA
1 TATAT-ATCAAAATAATCACA
* *
63208895 TA-ATATCAAATTATTCACA
1 TATATATCAAAATAATCACA
63208914 TATATAT
1 TATATAT
63208921 ACTTACAACT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.36
Consensus pattern (20 bp):
TATATATCAAAATAATCACA
Found at i:63218188 original size:17 final size:18
Alignment explanation
Indices: 63218166--63218199 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
63218156 GAGTACTAAG
63218166 TAAAAATCA-CAAAAACA
1 TAAAAATCATCAAAAACA
63218183 TAAAAATCATCAAAAAC
1 TAAAAATCATCAAAAAC
63218200 TGAACAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.68, C:0.18, G:0.00, T:0.15
Consensus pattern (18 bp):
TAAAAATCATCAAAAACA
Found at i:63223315 original size:64 final size:64
Alignment explanation
Indices: 63223234--63223417 Score: 176
Period size: 67 Copynumber: 2.8 Consensus size: 64
63223224 AGACATTATG
* *
63223234 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * * *
63223298 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGCAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
63223363 AA
63 AA
* * * * *
63223365 ACTG--GCTAGATCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
63223418 CGAACTATAT
Statistics
Matches: 95, Mismatches: 20, Indels: 11
0.75 0.16 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.19
64 21 0.22
65 8 0.08
66 15 0.16
67 30 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.22
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:63227534 original size:55 final size:56
Alignment explanation
Indices: 63227414--63227550 Score: 195
Period size: 55 Copynumber: 2.5 Consensus size: 56
63227404 ACTGTCCCAG
** *
63227414 ACATGGTCTTACTCGCACACATATATCGGAGTCACATATCAATGGCAACCTATAAA
1 ACATGGTCTTACTCGCACACATATATCAAAGTCACATATCAATGCCAACCTATAAA
* * * * *
63227470 ACGTAGTCTTACTCGCACACATTTATCAAAG-CACATATCGATGCCAACGTATAAA
1 ACATGGTCTTACTCGCACACATATATCAAAGTCACATATCAATGCCAACCTATAAA
63227525 ACATGGTCTTACTCGCACACATATAT
1 ACATGGTCTTACTCGCACACATATAT
63227551 TGATGCCATG
Statistics
Matches: 70, Mismatches: 11, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
55 44 0.63
56 26 0.37
ACGTcount: A:0.35, C:0.26, G:0.13, T:0.26
Consensus pattern (56 bp):
ACATGGTCTTACTCGCACACATATATCAAAGTCACATATCAATGCCAACCTATAAA
Found at i:63228670 original size:14 final size:15
Alignment explanation
Indices: 63228653--63228681 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
63228643 GCACAAAAAT
63228653 TTCACACAT-ATAAA
1 TTCACACATAATAAA
63228667 TTCACACATAATAAA
1 TTCACACATAATAAA
63228682 CACAACAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:63238424 original size:71 final size:67
Alignment explanation
Indices: 63238347--63238488 Score: 167
Period size: 67 Copynumber: 2.1 Consensus size: 67
63238337 TCACCAGATA
* * * *
63238347 CAGATATTGTGGCTAGGCCACCAGAACAGATATATATATGTGGCAAAGCCACTAGATTGCAGCGA
1 CAGATATTGTGACGAAGCCACCAGAACAG----ATATATGTGGCAAAGCCACCAGATTGCAGCGA
63238412 GGCTGC
62 GGCTGC
* * * * *
63238418 CAGATATTGTGACGAAGTCACTAGAACAGATATGTGTGGCGAAGCCACCATATTGCAGCGAGGCT
1 CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCAAAGCCACCAGATTGCAGCGAGGCT
63238483 GC
66 GC
63238485 CAGA
1 CAGA
63238489 ACGCTTCCGC
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
67 38 0.61
71 24 0.39
ACGTcount: A:0.31, C:0.21, G:0.27, T:0.20
Consensus pattern (67 bp):
CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCAAAGCCACCAGATTGCAGCGAGGCT
GC
Found at i:63242207 original size:45 final size:45
Alignment explanation
Indices: 63242149--63242240 Score: 157
Period size: 45 Copynumber: 2.0 Consensus size: 45
63242139 TTCGATGATC
*
63242149 TCTTATGTGAATCTCTAGCTTCAAAGTCAGCTTTTCTTTTCTCTT
1 TCTTATGTGAATCTCTAGCTTCAAAGTCAGCTTTTCTTTTCCCTT
* *
63242194 TCTTATGTGAATCTCTAGCTTCAAATTCATCTTTTCTTTTCCCTT
1 TCTTATGTGAATCTCTAGCTTCAAAGTCAGCTTTTCTTTTCCCTT
63242239 TC
1 TC
63242241 CCAAGCTCTT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.17, C:0.24, G:0.09, T:0.50
Consensus pattern (45 bp):
TCTTATGTGAATCTCTAGCTTCAAAGTCAGCTTTTCTTTTCCCTT
Found at i:63244986 original size:56 final size:56
Alignment explanation
Indices: 63244866--63244987 Score: 149
Period size: 56 Copynumber: 2.2 Consensus size: 56
63244856 TCCCAGACAG
** **
63244866 GGTCTTACTCGTACACATATATCAGAGTCACATATCAATCCTAACGTATAAAATGT
1 GGTCTTACTCACACACATATATCAGAGTCACATATCAATCCTAACGTATAAAACAT
* * *
63244922 AGTTTTACTCACACACATATATCTA-AGTCACATATCGATGCC-AACGTATAAAACAT
1 GGTCTTACTCACACACATATATC-AGAGTCACATATCAAT-CCTAACGTATAAAACAT
63244978 GGTCTTACTC
1 GGTCTTACTC
63244988 GCACTGTAAC
Statistics
Matches: 55, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
56 52 0.95
57 3 0.05
ACGTcount: A:0.35, C:0.23, G:0.11, T:0.30
Consensus pattern (56 bp):
GGTCTTACTCACACACATATATCAGAGTCACATATCAATCCTAACGTATAAAACAT
Found at i:63248231 original size:32 final size:32
Alignment explanation
Indices: 63248195--63248283 Score: 151
Period size: 32 Copynumber: 2.8 Consensus size: 32
63248185 GTATACCTTT
63248195 CCTTTTCAAGTGTACACACAAAGTGTACATAA
1 CCTTTTCAAGTGTACACACAAAGTGTACATAA
63248227 CCTTTTCAAGTGTACACACAAAGTGTACATAA
1 CCTTTTCAAGTGTACACACAAAGTGTACATAA
* *
63248259 CCTTTTCATGTGGTATACACAAAGT
1 CCTTTTCAAGT-GTACACACAAAGT
63248284 ATACCTAAAA
Statistics
Matches: 54, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
32 42 0.78
33 12 0.22
ACGTcount: A:0.35, C:0.21, G:0.13, T:0.30
Consensus pattern (32 bp):
CCTTTTCAAGTGTACACACAAAGTGTACATAA
Found at i:63248299 original size:33 final size:33
Alignment explanation
Indices: 63248040--63248289 Score: 319
Period size: 33 Copynumber: 7.6 Consensus size: 33
63248030 TCTTTCTGAG
* *
63248040 TGGTACACACAAAGTATACATTTCCTTTTCATA
1 TGGTATACACAAAGTATACCTTTCCTTTTCATA
*
63248073 TGGTATACACAAAGTATATCTTTCCTTTTCATA
1 TGGTATACACAAAGTATACCTTTCCTTTTCATA
*
63248106 TGGTATACACAAAGTATTCCTTTCCTTTTCATA
1 TGGTATACACAAAGTATACCTTTCCTTTTCATA
63248139 TGGTATACACAAAGTATACCTTTCCTTTTCATA
1 TGGTATACACAAAGTATACCTTTCCTTTTCATA
63248172 TGGTATACACAAAGTATACCTTTCCTTTTCA-A
1 TGGTATACACAAAGTATACCTTTCCTTTTCATA
* * * **
63248204 -GTGTACACACAAAGTGTACATAACCTTTTCA-A
1 TG-GTATACACAAAGTATACCTTTCCTTTTCATA
* * * ** *
63248236 -GTGTACACACAAAGTGTACATAACCTTTTCATG
1 TG-GTATACACAAAGTATACCTTTCCTTTTCATA
63248269 TGGTATACACAAAGTATACCT
1 TGGTATACACAAAGTATACCT
63248290 AAAATTTTCA
Statistics
Matches: 199, Mismatches: 15, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
31 1 0.01
32 57 0.29
33 140 0.70
34 1 0.01
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.36
Consensus pattern (33 bp):
TGGTATACACAAAGTATACCTTTCCTTTTCATA
Found at i:63248337 original size:29 final size:29
Alignment explanation
Indices: 63248294--63248446 Score: 243
Period size: 29 Copynumber: 5.2 Consensus size: 29
63248284 ATACCTAAAA
* *
63248294 TTTTCACATTTGATAGCCAAAGCTATCCC
1 TTTTCACATTCGATAGCCGAAGCTATCCC
63248323 TTTTCACATTCGATAGCCGAAGCTATCCCC
1 TTTTCACATTCGATAGCCGAAGCTAT-CCC
* * *
63248353 TTTTTACATTCGATAGCCAAAGCTATCCT
1 TTTTCACATTCGATAGCCGAAGCTATCCC
*
63248382 TTTTCACATTCAATAGCCGAAGCTATCCC
1 TTTTCACATTCGATAGCCGAAGCTATCCC
63248411 TTTTCACATTCGATAGCCGAAGCTATCCC
1 TTTTCACATTCGATAGCCGAAGCTATCCC
63248440 TTTTCAC
1 TTTTCAC
63248447 CTGGTACACA
Statistics
Matches: 113, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
29 86 0.76
30 27 0.24
ACGTcount: A:0.25, C:0.29, G:0.11, T:0.34
Consensus pattern (29 bp):
TTTTCACATTCGATAGCCGAAGCTATCCC
Found at i:63248369 original size:59 final size:58
Alignment explanation
Indices: 63248294--63248446 Score: 252
Period size: 59 Copynumber: 2.6 Consensus size: 58
63248284 ATACCTAAAA
* *
63248294 TTTTCACATTTGATAGCCAAAGCTATCCCTTTTCACATTCGATAGCCGAAGCTATCCCC
1 TTTTCACATTCGATAGCCAAAGCTATCCCTTTTCACATTCAATAGCCGAAGCTAT-CCC
* *
63248353 TTTTTACATTCGATAGCCAAAGCTATCCTTTTTCACATTCAATAGCCGAAGCTATCCC
1 TTTTCACATTCGATAGCCAAAGCTATCCCTTTTCACATTCAATAGCCGAAGCTATCCC
*
63248411 TTTTCACATTCGATAGCCGAAGCTATCCCTTTTCAC
1 TTTTCACATTCGATAGCCAAAGCTATCCCTTTTCAC
63248447 CTGGTACACA
Statistics
Matches: 87, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
58 36 0.41
59 51 0.59
ACGTcount: A:0.25, C:0.29, G:0.11, T:0.34
Consensus pattern (58 bp):
TTTTCACATTCGATAGCCAAAGCTATCCCTTTTCACATTCAATAGCCGAAGCTATCCC
Found at i:63257717 original size:22 final size:22
Alignment explanation
Indices: 63257691--63257753 Score: 74
Period size: 22 Copynumber: 2.9 Consensus size: 22
63257681 GCAAATACGT
*
63257691 TTGGCACATAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
63257713 TTGGCACAAAGCAAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
63257735 TTGGCATAAAGCCATAATC
1 TTGGCACAAAGCCATAATC
63257754 TATTTAATAA
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
21 2 0.06
22 29 0.88
23 2 0.06
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.24
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:63257963 original size:41 final size:41
Alignment explanation
Indices: 63257905--63258023 Score: 175
Period size: 41 Copynumber: 2.9 Consensus size: 41
63257895 GCCATCAGTA
*
63257905 GATCCACAGTCGTCAAGCAACCATGCGATCCTTAATTGGTG
1 GATCCACAGTCGTCAAGCAACCATGCGATCCTCAATTGGTG
*
63257946 TATCCACAGTCGTCAAGCAACCATGCGATCCTCAATTGGTG
1 GATCCACAGTCGTCAAGCAACCATGCGATCCTCAATTGGTG
* * * * *
63257987 GATACACGGTTGTCAAGCAACCATACGCTCCTCAATT
1 GATCCACAGTCGTCAAGCAACCATGCGATCCTCAATT
63258024 TCTTCCTCCA
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 70 1.00
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (41 bp):
GATCCACAGTCGTCAAGCAACCATGCGATCCTCAATTGGTG
Found at i:63258496 original size:108 final size:107
Alignment explanation
Indices: 63258274--63258548 Score: 329
Period size: 108 Copynumber: 2.5 Consensus size: 107
63258264 TGGTAAATCT
* * * **
63258274 ACAAACTAAGGGTATTTTGGTAATTTTGCAAACCAATGGTATTTCTGTAATTTTTGATAGTCAAC
1 ACAAATTAGGGGTATTTTGGTAATTTTACAAACCAA-GGTATTT-TGTAATTTTACA-AGTCAAC
** * * *
63258339 GGTATTTCTGTAATTTTTCAAATTAAGGGTATTTCGATAACTTTC
63 GGTATTTCAATAATTTTACAAATCAAGGGTATTTCAATAACTTTC
* * *
63258384 -CAAATTAGGGGTATTTTGGTAATTTTATAAATCGAAGGTATTTTAGTAATTTTACAAGTCAAGG
1 ACAAATTAGGGGTATTTTGGTAATTTTACAAA-CCAAGGTATTTT-GTAATTTTACAAGTCAACG
*
63258448 GTATTTCAATAATTTTACAAGTCAAGGGTATTTCAATAA-TTTC
64 GTATTTCAATAATTTTACAAATCAAGGGTATTTCAATAACTTTC
* *
63258491 ACAAATTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAA
1 ACAAATTAGGGGTATTTTGGTAATTTTACAAACCA-AGGTATTTT-GTAATTTTACAA
63258549 ACTAGAGGTA
Statistics
Matches: 143, Mismatches: 18, Indels: 10
0.84 0.11 0.06
Matches are distributed among these distances:
107 6 0.04
108 91 0.64
109 43 0.30
110 3 0.02
ACGTcount: A:0.32, C:0.09, G:0.17, T:0.41
Consensus pattern (107 bp):
ACAAATTAGGGGTATTTTGGTAATTTTACAAACCAAGGTATTTTGTAATTTTACAAGTCAACGGT
ATTTCAATAATTTTACAAATCAAGGGTATTTCAATAACTTTC
Found at i:63258623 original size:27 final size:27
Alignment explanation
Indices: 63258253--63258615 Score: 270
Period size: 27 Copynumber: 13.4 Consensus size: 27
63258243 CTTCACCCTA
* * *
63258253 CAAGGGTGTTTTGGTAAATCTACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
63258279 CTAAGGGTATTTTGGTAATTTTGCAAAC
1 C-AAGGGTATTTTGGTAATTTTACAAAT
* ** *
63258307 CAATGGTATTTCT-GTAATTTTTGATAGT
1 CAAGGGTATTT-TGGTAATTTTACA-AAT
* *
63258335 CAACGGTATTTCT-GTAATTTTTCAAAT
1 CAAGGGTATTT-TGGTAATTTTACAAAT
* * * * *
63258362 TAAGGGTATTTCGATAACTTTCCAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *
63258389 TAGGGGTATTTTGGTAATTTTATAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
63258416 CGAA-GGTATTTTAGTAATTTTACAAGT
1 C-AAGGGTATTTTGGTAATTTTACAAAT
*** *
63258443 CAAGGGTATTTCAATAATTTTACAAGT
1 CAAGGGTATTTTGGTAATTTTACAAAT
*** *
63258470 CAAGGGTATTTCAATAATTTCACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
63258497 TAGGGGTATTTTGGTAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
63258523 CTAGGGGTATTTTGGTAATTTTACAAA-
1 C-AAGGGTATTTTGGTAATTTTACAAAT
* * *
63258550 CTAGAGGTATTTTGGTAATTTTTCTAAT
1 CAAG-GGTATTTTGGTAATTTTACAAAT
* ** *
63258578 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
63258605 CAAGGGTATTT
1 CAAGGGTATTT
63258616 CAGTAATTCT
Statistics
Matches: 277, Mismatches: 50, Indels: 19
0.80 0.14 0.05
Matches are distributed among these distances:
26 4 0.01
27 244 0.88
28 29 0.10
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAT
Found at i:63258635 original size:27 final size:27
Alignment explanation
Indices: 63258606--63258712 Score: 135
Period size: 27 Copynumber: 4.0 Consensus size: 27
63258596 TTTGTAAACC
*
63258606 AAGGGTATTTCAGTAATTCTACCCT-T
1 AAGGGCATTTCAGTAATTCTACCCTAT
*
63258632 CAAGGGCATTTCAGTAATTCTATCCTAT
1 -AAGGGCATTTCAGTAATTCTACCCTAT
*
63258660 AATGGCATTTCAGTAATTCTACCCTAT
1 AAGGGCATTTCAGTAATTCTACCCTAT
* * * *
63258687 AGGGGTATTTCAGTAATACTAGCCTA
1 AAGGGCATTTCAGTAATTCTACCCTA
63258713 CAGATATGAG
Statistics
Matches: 70, Mismatches: 9, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
27 69 0.99
28 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.36
Consensus pattern (27 bp):
AAGGGCATTTCAGTAATTCTACCCTAT
Found at i:63265613 original size:56 final size:55
Alignment explanation
Indices: 63265545--63265663 Score: 184
Period size: 56 Copynumber: 2.1 Consensus size: 55
63265535 TGGGAAGTAG
* * *
63265545 TTGGGCTTGATGGCCCGTATGAATGTGATTGGGCCTAATGGGCCATATGAATGTGA
1 TTGGGCCTGATGGCCCATATGAATGTGATTGGGCCTAAT-GGCCATATGAATGAGA
* *
63265601 TTGGGCCTGATGGGCCATATGAATGTGATTGGGCCTAATGGCCATGTGAATGAGA
1 TTGGGCCTGATGGCCCATATGAATGTGATTGGGCCTAATGGCCATATGAATGAGA
63265656 TTGGGCCT
1 TTGGGCCT
63265664 AAATGGGCCA
Statistics
Matches: 58, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
55 22 0.38
56 36 0.62
ACGTcount: A:0.21, C:0.15, G:0.34, T:0.29
Consensus pattern (55 bp):
TTGGGCCTGATGGCCCATATGAATGTGATTGGGCCTAATGGCCATATGAATGAGA
Found at i:63265651 original size:27 final size:28
Alignment explanation
Indices: 63265562--63265680 Score: 186
Period size: 28 Copynumber: 4.2 Consensus size: 28
63265552 TGATGGCCCG
63265562 TATGAATGTGATTGGGCCTAATGGGCCA
1 TATGAATGTGATTGGGCCTAATGGGCCA
*
63265590 TATGAATGTGATTGGGCCTGATGGGCCA
1 TATGAATGTGATTGGGCCTAATGGGCCA
63265618 TATGAATGTGATTGGGCCTAAT-GGCCA
1 TATGAATGTGATTGGGCCTAATGGGCCA
* *
63265645 TGTGAATGAGATTGGGCCTAAATGGGCCA
1 TATGAATGTGATTGGGCCT-AATGGGCCA
*
63265674 AATGAAT
1 TATGAAT
63265681 AAGTGTGAAT
Statistics
Matches: 83, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.27
28 51 0.61
29 10 0.12
ACGTcount: A:0.27, C:0.13, G:0.32, T:0.28
Consensus pattern (28 bp):
TATGAATGTGATTGGGCCTAATGGGCCA
Found at i:63266010 original size:27 final size:27
Alignment explanation
Indices: 63265980--63266299 Score: 400
Period size: 27 Copynumber: 12.0 Consensus size: 27
63265970 TAATAAAAAG
*
63265980 AAATTACTGAAATACCCTTGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
63266007 AAATTACCGAAATACTCC-CGATTTGTA
1 AAATTACTGAAATAC-CCTCGATTTGTA
* * *
63266034 AAATTACTAAAATGCCCTCGA-TTGTG
1 AAATTACTGAAATACCCTCGATTTGTA
* *
63266060 AAATTATTGAAATGCCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
63266087 AAATTACTGAAATACCCTCGATTT-TG
1 AAATTACTGAAATACCCTCGATTTGTA
*
63266113 AAATTACTGAAATACCCTCGTTTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
63266140 AAATTACTAAAATACCCTCGA-TTGTG
1 AAATTACTGAAATACCCTCGATTTGTA
*
63266166 AAATTACTGAAATACCCTTGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
** * *
63266193 AAATTACCAAAATACCCCCGATTTGTG
1 AAATTACTGAAATACCCTCGATTTGTA
* *
63266220 AAATTACCGAAACACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
63266247 AAATTA-TCGAAATACCCTCAATTTGTA
1 AAATTACT-GAAATACCCTCGATTTGTA
63266274 AAATTA-TAGAAATACCCTCGATTTGT
1 AAATTACT-GAAATACCCTCGATTTGT
63266300 TGTAGTGTAA
Statistics
Matches: 253, Mismatches: 34, Indels: 12
0.85 0.11 0.04
Matches are distributed among these distances:
26 72 0.28
27 179 0.71
28 2 0.01
ACGTcount: A:0.37, C:0.19, G:0.12, T:0.33
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:63266072 original size:53 final size:54
Alignment explanation
Indices: 63265980--63266299 Score: 418
Period size: 53 Copynumber: 6.0 Consensus size: 54
63265970 TAATAAAAAG
* * * *
63265980 AAATTACTGAAATACCCTTGATTTGTAAAATTACCGAAATACTCC-CGATTTGTA
1 AAATTACTAAAATACCCTCGATTTGTGAAATTACTGAAATAC-CCTCGATTTGTA
* * *
63266034 AAATTACTAAAATGCCCTCGA-TTGTGAAATTATTGAAATGCCCTCGATTTGTA
1 AAATTACTAAAATACCCTCGATTTGTGAAATTACTGAAATACCCTCGATTTGTA
* *
63266087 AAATTACTGAAATACCCTCGATTT-TGAAATTACTGAAATACCCTCGTTTTGTA
1 AAATTACTAAAATACCCTCGATTTGTGAAATTACTGAAATACCCTCGATTTGTA
*
63266140 AAATTACTAAAATACCCTCGA-TTGTGAAATTACTGAAATACCCTTGATTTGTA
1 AAATTACTAAAATACCCTCGATTTGTGAAATTACTGAAATACCCTCGATTTGTA
* * * *
63266193 AAATTACCAAAATACCCCCGATTTGTGAAATTACCGAAACACCCTCGATTTGTA
1 AAATTACTAAAATACCCTCGATTTGTGAAATTACTGAAATACCCTCGATTTGTA
* * *
63266247 AAATTA-TCGAAATACCCTCAATTTGTAAAATTA-TAGAAATACCCTCGATTTGT
1 AAATTACT-AAAATACCCTCGATTTGTGAAATTACT-GAAATACCCTCGATTTGT
63266300 TGTAGTGTAA
Statistics
Matches: 233, Mismatches: 27, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
52 4 0.02
53 136 0.58
54 93 0.40
ACGTcount: A:0.37, C:0.19, G:0.12, T:0.33
Consensus pattern (54 bp):
AAATTACTAAAATACCCTCGATTTGTGAAATTACTGAAATACCCTCGATTTGTA
Found at i:63266144 original size:80 final size:81
Alignment explanation
Indices: 63265979--63266299 Score: 420
Period size: 80 Copynumber: 4.0 Consensus size: 81
63265969 ATAATAAAAA
* *
63265979 GAAATTACTGAAATACCCTTGATTTGTAAAATTACCGAAATACTCC-CGATTTGTAAAATTACTA
1 GAAATTACTGAAATACCCTCGATTTGTAAAATTACTGAAATAC-CCTCGATTTGTAAAATTACTA
*
63266043 AAATGCCCTCGA-TTGT
65 AAATACCCTCGATTTGT
* * * *
63266059 GAAATTATTGAAATGCCCTCGATTTGTAAAATTACTGAAATACCCTCGATTT-TGAAATTACTGA
1 GAAATTACTGAAATACCCTCGATTTGTAAAATTACTGAAATACCCTCGATTTGTAAAATTACTAA
*
63266123 AATACCCTCGTTTTGT
66 AATACCCTCGATTTGT
* * * * *
63266139 AAAATTACTAAAATACCCTCGA-TTGTGAAATTACTGAAATACCCTTGATTTGTAAAATTACCAA
1 GAAATTACTGAAATACCCTCGATTTGTAAAATTACTGAAATACCCTCGATTTGTAAAATTACTAA
*
63266203 AATACCCCCGATTTGT
66 AATACCCTCGATTTGT
* * *
63266219 GAAATTACCGAAACACCCTCGATTTGTAAAATTA-TCGAAATACCCTCAATTTGTAAAATTA-TA
1 GAAATTACTGAAATACCCTCGATTTGTAAAATTACT-GAAATACCCTCGATTTGTAAAATTACTA
63266282 GAAATACCCTCGATTTGT
65 -AAATACCCTCGATTTGT
63266300 TGTAGTGTAA
Statistics
Matches: 207, Mismatches: 28, Indels: 11
0.84 0.11 0.04
Matches are distributed among these distances:
79 48 0.23
80 110 0.53
81 49 0.24
ACGTcount: A:0.36, C:0.19, G:0.12, T:0.33
Consensus pattern (81 bp):
GAAATTACTGAAATACCCTCGATTTGTAAAATTACTGAAATACCCTCGATTTGTAAAATTACTAA
AATACCCTCGATTTGT
Found at i:63270478 original size:61 final size:61
Alignment explanation
Indices: 63270383--63270504 Score: 244
Period size: 61 Copynumber: 2.0 Consensus size: 61
63270373 TAATTTCTTC
63270383 AAGTTAGTGGCATGTATAGGGACTTAATTATTGATATGTGTTTTTATATTTTGGCCAAGAT
1 AAGTTAGTGGCATGTATAGGGACTTAATTATTGATATGTGTTTTTATATTTTGGCCAAGAT
63270444 AAGTTAGTGGCATGTATAGGGACTTAATTATTGATATGTGTTTTTATATTTTGGCCAAGAT
1 AAGTTAGTGGCATGTATAGGGACTTAATTATTGATATGTGTTTTTATATTTTGGCCAAGAT
63270505 GTTGGCTTAT
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 61 1.00
ACGTcount: A:0.28, C:0.07, G:0.23, T:0.43
Consensus pattern (61 bp):
AAGTTAGTGGCATGTATAGGGACTTAATTATTGATATGTGTTTTTATATTTTGGCCAAGAT
Found at i:63272864 original size:15 final size:15
Alignment explanation
Indices: 63272844--63272886 Score: 68
Period size: 15 Copynumber: 2.9 Consensus size: 15
63272834 TGTTGTAAAT
*
63272844 TGGATTTCCTTATCA
1 TGGATTTCTTTATCA
*
63272859 TGGATTTCTTTATCT
1 TGGATTTCTTTATCA
63272874 TGGATTTCTTTAT
1 TGGATTTCTTTAT
63272887 TCTGGGCTTC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.16, C:0.14, G:0.14, T:0.56
Consensus pattern (15 bp):
TGGATTTCTTTATCA
Found at i:63273512 original size:14 final size:15
Alignment explanation
Indices: 63273493--63273521 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
63273483 AAATTTCATA
63273493 TGGATT-TTCTTGTC
1 TGGATTATTCTTGTC
63273507 TGGATTATTCTTGTC
1 TGGATTATTCTTGTC
63273522 CTTGAAAGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.10, C:0.14, G:0.21, T:0.55
Consensus pattern (15 bp):
TGGATTATTCTTGTC
Found at i:63279693 original size:55 final size:55
Alignment explanation
Indices: 63279604--63279720 Score: 171
Period size: 55 Copynumber: 2.1 Consensus size: 55
63279594 GTGAGCCAAC
* * **
63279604 GGGCGTGTGTCTTGGTCGTGCCTAAAAGTCAGTGTTTCCCATGAATTAAAGGCAT
1 GGGCGTGTGTCTTGGCCGTGCCTAAAAGTCAGTGTTGCCCACAAATTAAAGGCAT
* *
63279659 GGGCGTGTTTCTTGGCCGTGCCTAAAAGTTAGTGTTGCCCACAAATTAAAGGCAT
1 GGGCGTGTGTCTTGGCCGTGCCTAAAAGTCAGTGTTGCCCACAAATTAAAGGCAT
*
63279714 GGACGTG
1 GGGCGTG
63279721 CCCTAGGCCA
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.29
Consensus pattern (55 bp):
GGGCGTGTGTCTTGGCCGTGCCTAAAAGTCAGTGTTGCCCACAAATTAAAGGCAT
Found at i:63281380 original size:14 final size:15
Alignment explanation
Indices: 63281363--63281391 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
63281353 GCACGAAAAT
63281363 TTCACACAT-ATAAA
1 TTCACACATAATAAA
63281377 TTCACACATAATAAA
1 TTCACACATAATAAA
63281392 CACAAAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:63281864 original size:17 final size:18
Alignment explanation
Indices: 63281837--63281887 Score: 70
Period size: 17 Copynumber: 2.9 Consensus size: 18
63281827 ATAAATAAAA
* *
63281837 TTTAGGGTTTTAAGTGTT
1 TTTAGGGTTTTAAGAGAT
63281855 TTTA-GGTTTTAAGAGAT
1 TTTAGGGTTTTAAGAGAT
63281872 TTTAGGGTTTT-AGAGA
1 TTTAGGGTTTTAAGAGA
63281888 GGATTAGAGG
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
17 20 0.67
18 10 0.33
ACGTcount: A:0.24, C:0.00, G:0.27, T:0.49
Consensus pattern (18 bp):
TTTAGGGTTTTAAGAGAT
Found at i:63282138 original size:8 final size:8
Alignment explanation
Indices: 63282125--63282149 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
63282115 CACACTCTAA
63282125 AATTTTGG
1 AATTTTGG
63282133 AATTTTGG
1 AATTTTGG
63282141 AATTTTGG
1 AATTTTGG
63282149 A
1 A
63282150 CTAACAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.28, C:0.00, G:0.24, T:0.48
Consensus pattern (8 bp):
AATTTTGG
Found at i:63290564 original size:27 final size:27
Alignment explanation
Indices: 63290533--63290590 Score: 82
Period size: 27 Copynumber: 2.1 Consensus size: 27
63290523 ACCCTCTAAT
*
63290533 TGATAAAATGACT-GTTACGCCCCTATG
1 TGATAAAATGACTAATT-CGCCCCTATG
*
63290560 TGATAAAATGACTAATTTGCCCCTATG
1 TGATAAAATGACTAATTCGCCCCTATG
63290587 TGAT
1 TGAT
63290591 GTATGTTTGT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 26 0.93
28 2 0.07
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (27 bp):
TGATAAAATGACTAATTCGCCCCTATG
Found at i:63292324 original size:41 final size:42
Alignment explanation
Indices: 63292267--63292404 Score: 183
Period size: 41 Copynumber: 3.4 Consensus size: 42
63292257 GTGATATTCG
* *
63292267 GGCTTTATTGCCTAGCAGGCTTTGTGCCGGTGTATAATATTG
1 GGCTTTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATTA
*
63292309 GGCTTTA-TGCCTAGCAGGCTTTGTGCCGGTGTATTATATCA
1 GGCTTTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATTA
* * * * *
63292350 AGC-TTATTGCCTAACAGGCTCTATGCCGGTGTATTATACTA
1 GGCTTTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATTA
63292391 GGCTTTA-TGCCTAG
1 GGCTTTATTGCCTAG
63292405 AAAATTTTAT
Statistics
Matches: 83, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
40 3 0.04
41 70 0.84
42 10 0.12
ACGTcount: A:0.19, C:0.20, G:0.25, T:0.36
Consensus pattern (42 bp):
GGCTTTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATTA
Found at i:63295235 original size:46 final size:46
Alignment explanation
Indices: 63295185--63295360 Score: 162
Period size: 46 Copynumber: 3.8 Consensus size: 46
63295175 TGTTTGGGCA
* *
63295185 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
63295231 TCCGAACTCGTTGAGTTGAGTCCGAG-T---TTGTGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCAA--A--CG
* * **
63295278 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTCATGGATGCGGACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
63295324 CCCGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
63295361 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 18, Indels: 18
0.74 0.13 0.13
Matches are distributed among these distances:
42 4 0.04
43 6 0.06
45 2 0.02
46 57 0.55
47 25 0.24
48 2 0.02
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:63295340 original size:93 final size:93
Alignment explanation
Indices: 63295181--63295351 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
63295171 AGGATGTTTG
* * * *
63295181 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTCATGGATGCAAACGCCCGAACTCATTGAG
63295246 TTGAGTCCGAGTTTGTGAGATGTAACTA
66 TTGAGTCCGAGTTTGTGAGATGTAACTA
** *
63295274 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTCATGGATGCGGACGCCCGAGCTCATTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTCATGGATGCAAACGCCCGAACTCATTGAG
63295339 TTGAGTCCGAGTT
66 TTGAGTCCGAGTT
63295352 CGCTTATGGG
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTCATGGATGCAAACGCCCGAACTCATTGAG
TTGAGTCCGAGTTTGTGAGATGTAACTA
Found at i:63300926 original size:46 final size:46
Alignment explanation
Indices: 63300864--63301137 Score: 406
Period size: 46 Copynumber: 6.0 Consensus size: 46
63300854 TTTGACATGA
* * * * * *
63300864 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
* *
63300910 TTCCATGGTATCTTTCAACCATGATCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* * *
63300956 TGTCATGTTATCTTTCAACCATTGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* *
63301002 TGCCACGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
63301048 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
63301094 TGCCATGGTATCTTTCAACCACGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
63301138 AGAGCACACT
Statistics
Matches: 206, Mismatches: 21, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 4 0.02
46 202 0.98
ACGTcount: A:0.23, C:0.24, G:0.14, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:63303285 original size:11 final size:11
Alignment explanation
Indices: 63303269--63303299 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
63303259 ATATATATTA
63303269 AATAAAATAAT
1 AATAAAATAAT
63303280 AATAAAATAAT
1 AATAAAATAAT
63303291 AATAAAATA
1 AATAAAATA
63303300 TCATTTAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (11 bp):
AATAAAATAAT
Found at i:63306383 original size:46 final size:46
Alignment explanation
Indices: 63306329--63306465 Score: 256
Period size: 46 Copynumber: 3.0 Consensus size: 46
63306319 TTTGACATGA
*
63306329 TGCCATGGTATCTTTTAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
63306375 TTCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
63306421 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGG
63306466 CTTGTAATAT
Statistics
Matches: 88, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
46 88 1.00
ACGTcount: A:0.24, C:0.23, G:0.15, T:0.38
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:63307813 original size:46 final size:46
Alignment explanation
Indices: 63307763--63307932 Score: 186
Period size: 46 Copynumber: 3.7 Consensus size: 46
63307753 TTGAGTATCC
*
63307763 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCT
* * * * *
63307809 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CGTCT
* *
63307856 GAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACG-CT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCT
*
63307901 CGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 -GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
63307933 GGGGCGGGTT
Statistics
Matches: 101, Mismatches: 15, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
43 6 0.06
45 4 0.04
46 56 0.55
47 27 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCT
Found at i:63307918 original size:93 final size:93
Alignment explanation
Indices: 63307759--63307927 Score: 286
Period size: 93 Copynumber: 1.8 Consensus size: 93
63307749 ATGGTTGAGT
* *
63307759 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCTGAACTCGTTGAGTTG
1 ATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACGTCTGAACTCGTTGAGTTG
63307824 AGTCCGAGTTCGTGAGATGTAACTAGGC
66 AGTCCGAGTTCGTGAGATGTAACTAGGC
* *
63307852 ATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACG-CTCGAGCTCGTTGAGTT
1 ATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACGTCT-GAACTCGTTGAGTT
63307916 GAGTCCGAGTTC
65 GAGTCCGAGTTC
63307928 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (93 bp):
ATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACGTCTGAACTCGTTGAGTTG
AGTCCGAGTTCGTGAGATGTAACTAGGC
Found at i:63309323 original size:46 final size:46
Alignment explanation
Indices: 63309256--63309355 Score: 191
Period size: 46 Copynumber: 2.2 Consensus size: 46
63309246 TTACAAGGCT
63309256 TATCTTTCAACCATGGTCTTACACATTTCATATCAGGCTGCCATGG
1 TATCTTTCAACCATGGTCTTACACATTTCATATCAGGCTGCCATGG
*
63309302 TATCTTTCAACCATGGTCTTACACATTTCATATCAGGCTGCCATGT
1 TATCTTTCAACCATGGTCTTACACATTTCATATCAGGCTGCCATGG
63309348 TATCTTTC
1 TATCTTTC
63309356 TACATCATTT
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 53 1.00
ACGTcount: A:0.23, C:0.26, G:0.13, T:0.38
Consensus pattern (46 bp):
TATCTTTCAACCATGGTCTTACACATTTCATATCAGGCTGCCATGG
Found at i:63312927 original size:44 final size:44
Alignment explanation
Indices: 63312864--63312951 Score: 176
Period size: 44 Copynumber: 2.0 Consensus size: 44
63312854 AATTCAGTAA
63312864 GTGTGAGTTCTGGTTGAGAGAGGTAACTTTCTTGGGGCATGTTG
1 GTGTGAGTTCTGGTTGAGAGAGGTAACTTTCTTGGGGCATGTTG
63312908 GTGTGAGTTCTGGTTGAGAGAGGTAACTTTCTTGGGGCATGTTG
1 GTGTGAGTTCTGGTTGAGAGAGGTAACTTTCTTGGGGCATGTTG
63312952 TCTCTGCTGA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.16, C:0.09, G:0.39, T:0.36
Consensus pattern (44 bp):
GTGTGAGTTCTGGTTGAGAGAGGTAACTTTCTTGGGGCATGTTG
Found at i:63316264 original size:27 final size:26
Alignment explanation
Indices: 63316220--63316270 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
63316210 CTCGCTGCAA
*
63316220 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
63316247 TCTGGTGACTTCGTCACAATATCT
1 TCTGGTGACCTCGCCACAATATCT
63316271 AGCAGCCTCA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.18, C:0.27, G:0.20, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:63316339 original size:26 final size:27
Alignment explanation
Indices: 63316310--63316369 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
63316300 CCACATATAT
*
63316310 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
63316336 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
63316363 ATATCTG
1 ATATCTG
63316370 GCAGCTTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:63322987 original size:28 final size:28
Alignment explanation
Indices: 63322956--63323009 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
63322946 CCTCCACTTG
63322956 CAAATGATAGTATCTCGACCTCAAATCA
1 CAAATGATAGTATCTCGACCTCAAATCA
*
63322984 CAAATGATAGTGTCTCGACCTCAAAT
1 CAAATGATAGTATCTCGACCTCAAAT
63323010 TAATCTTAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.37, C:0.24, G:0.13, T:0.26
Consensus pattern (28 bp):
CAAATGATAGTATCTCGACCTCAAATCA
Found at i:63329504 original size:29 final size:29
Alignment explanation
Indices: 63329443--63329514 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
63329433 ATCAACCGTG
*
63329443 CACACTTAGTGCCATGCACTTTAAACTCG
1 CACACTTAGTGCCATGCACTTTAAACTCA
**
63329472 CACACTTAGTGCCATGCA-TTTCAAGTTCA
1 CACACTTAGTGCCATGCACTTT-AAACTCA
*
63329501 CACACCTAGTGCCA
1 CACACTTAGTGCCA
63329515 ATCTCACAAC
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
28 3 0.08
29 35 0.92
ACGTcount: A:0.28, C:0.32, G:0.14, T:0.26
Consensus pattern (29 bp):
CACACTTAGTGCCATGCACTTTAAACTCA
Found at i:63333056 original size:13 final size:13
Alignment explanation
Indices: 63333040--63333065 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
63333030 AATAAGTTCT
63333040 AATATAAATCCAA
1 AATATAAATCCAA
63333053 AATATAAATCCAA
1 AATATAAATCCAA
63333066 CTATACCGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.15, G:0.00, T:0.23
Consensus pattern (13 bp):
AATATAAATCCAA
Found at i:63333579 original size:50 final size:48
Alignment explanation
Indices: 63333458--63333592 Score: 157
Period size: 49 Copynumber: 2.8 Consensus size: 48
63333448 CATGGGTAAG
* * *
63333458 GTACCGATGCCATGTCCTAGACATGGTCTTACACTGGCTATCATCTTC
1 GTACCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATCTCC
* * *
63333506 G-AGGCTGATGCCATGCCCCAGACATGGTCTTACACTAGCTCTCA-CATAACC
1 GTA--CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATC-T--CC
63333557 GTACCGATGCCATGTCCCAGACATGGTCTTACACTA
1 GTACCGATGCCATGTCCCAGACATGGTCTTACACTA
63333593 AAACATTTAT
Statistics
Matches: 73, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
47 1 0.01
48 2 0.03
49 36 0.49
50 31 0.42
51 2 0.03
52 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (48 bp):
GTACCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATCTCC
Found at i:63333692 original size:46 final size:46
Alignment explanation
Indices: 63333642--63333778 Score: 148
Period size: 47 Copynumber: 2.9 Consensus size: 46
63333632 TATTGGCTTA
*
63333642 CGTCCCGAGGCTGATGCATGTCCTAGACATGTCTTACACTAGCACT
1 CGTCCCAAGGCTGATGCATGTCCTAGACATGTCTTACACTAGCACT
** * *
63333688 CGTCCCAATACTGATGCCATGTCCTAGACATGGTCTTACACTGGCTCT
1 CGTCCCAAGGCTGATG-CATGTCCTAGACAT-GTCTTACACTAGCACT
* *** * * *
63333736 CATAATATGGCCGATGCATGTCCCAGACATGTCTTACACTAGC
1 CGTCCCAAGGCTGATGCATGTCCTAGACATGTCTTACACTAGC
63333779 TCACACAAAT
Statistics
Matches: 74, Mismatches: 15, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
46 25 0.34
47 27 0.36
48 22 0.30
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (46 bp):
CGTCCCAAGGCTGATGCATGTCCTAGACATGTCTTACACTAGCACT
Found at i:63341435 original size:26 final size:26
Alignment explanation
Indices: 63341400--63341449 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
63341390 AAGAATTCTA
*
63341400 AAAATATTAACATTCTAAATTTCTTT
1 AAAATATTAAAATTCTAAATTTCTTT
* *
63341426 AAAATCTTAAAATTTTAAATTTCT
1 AAAATATTAAAATTCTAAATTTCT
63341450 ATTCCAAACA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.44, C:0.10, G:0.00, T:0.46
Consensus pattern (26 bp):
AAAATATTAAAATTCTAAATTTCTTT
Found at i:63342099 original size:21 final size:19
Alignment explanation
Indices: 63342065--63342120 Score: 51
Period size: 21 Copynumber: 2.8 Consensus size: 19
63342055 GCTAAATATT
**
63342065 ATAAAAATAATATATTGATTA
1 ATAAAAATGTTATATT-A-TA
63342086 ATAAAAATGTTATAATTATA
1 ATAAAAATGTTAT-ATTATA
*
63342106 A-AAATATGTTATATT
1 ATAAAAATGTTATATT
63342121 TTTTTATCAT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
18 3 0.10
19 10 0.32
20 3 0.10
21 12 0.39
22 3 0.10
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (19 bp):
ATAAAAATGTTATATTATA
Found at i:63345381 original size:17 final size:17
Alignment explanation
Indices: 63345361--63345393 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
63345351 AAAAAAGTGT
63345361 GAAAGAAAAAAAGAAAA
1 GAAAGAAAAAAAGAAAA
*
63345378 GAAAGAAAAAGAGAAA
1 GAAAGAAAAAAAGAAA
63345394 GACTGTGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (17 bp):
GAAAGAAAAAAAGAAAA
Found at i:63345458 original size:18 final size:18
Alignment explanation
Indices: 63345399--63345479 Score: 76
Period size: 18 Copynumber: 4.3 Consensus size: 18
63345389 AGAAAGACTG
*
63345399 TGAAAAAGAAAAAGAGAA
1 TGAAAAAGAAAAAGAGAT
63345417 TGAGAGAAAGAAAAATGAGAT
1 TGA-A-AAAGAAAAA-GAGAT
63345438 TGAAAAAGAAAAAGA-ACT
1 TGAAAAAGAAAAAGAGA-T
**
63345456 TGATCAAG-AAAAGAAGAT
1 TGAAAAAGAAAAAG-AGAT
63345474 TGAAAA
1 TGAAAA
63345480 GGAGAGTGAG
Statistics
Matches: 52, Mismatches: 5, Indels: 12
0.75 0.07 0.17
Matches are distributed among these distances:
17 6 0.12
18 18 0.35
19 11 0.21
20 10 0.19
21 7 0.13
ACGTcount: A:0.63, C:0.02, G:0.22, T:0.12
Consensus pattern (18 bp):
TGAAAAAGAAAAAGAGAT
Found at i:63353437 original size:44 final size:45
Alignment explanation
Indices: 63353256--63353469 Score: 230
Period size: 44 Copynumber: 4.9 Consensus size: 45
63353246 ATATCGTACA
* ** *
63353256 ATGCCAACGTCCCAGACGTGGTCTTACATGCTATCTC--ATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGAAATCACATATATCG
* *
63353299 ATGCC-ACTGTCTCAGATAG-GGTCTTACACG-AATCA-A-ATA-CG
1 ATGCCAAC-GTCCCAGA-CGTGGTCTTACACGAAATCACATATATCG
* * * * *
63353340 ATGCCAATGTTCCAGACATGGTCTTACACGTAATCACATATATTG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGAAATCACATATATCG
*
63353385 ATGCCAACGTCCCAGACGTGGTCTTACAC-AAAACACATATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGAAATCACATATATCG
*
63353429 ATGTCAACGTCCCAGACGTGGTCTTACACGAAATCACATAT
1 ATGCCAACGTCCCAGACGTGGTCTTACACGAAATCACATAT
63353470 CGGAATTCTA
Statistics
Matches: 142, Mismatches: 19, Indels: 18
0.79 0.11 0.10
Matches are distributed among these distances:
41 24 0.17
42 14 0.10
43 23 0.16
44 44 0.31
45 37 0.26
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (45 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGAAATCACATATATCG
Found at i:63360022 original size:5 final size:5
Alignment explanation
Indices: 63360012--63360050 Score: 78
Period size: 5 Copynumber: 7.8 Consensus size: 5
63360002 TTGTGTGTTC
63360012 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTA
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTA
63360051 ACAAATTGGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 34 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
TTTAT
Found at i:63368292 original size:19 final size:19
Alignment explanation
Indices: 63368261--63368307 Score: 62
Period size: 18 Copynumber: 2.5 Consensus size: 19
63368251 GGGTTATTCT
63368261 AATT-TTAATCATTTAAAAA
1 AATTGTTAATCA-TTAAAAA
63368280 AATTGTTAA-CATTAAAAA
1 AATTGTTAATCATTAAAAA
63368298 AATTGATTAA
1 AATTG-TTAA
63368308 ATTATTCACT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
18 12 0.46
19 10 0.38
20 4 0.15
ACGTcount: A:0.53, C:0.04, G:0.04, T:0.38
Consensus pattern (19 bp):
AATTGTTAATCATTAAAAA
Found at i:63368296 original size:18 final size:18
Alignment explanation
Indices: 63368273--63368311 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
63368263 TTTTAATCAT
63368273 TTAAAAAAATTG-TTAACA
1 TTAAAAAAATTGATTAA-A
63368291 TTAAAAAAATTGATTAAA
1 TTAAAAAAATTGATTAAA
63368309 TTA
1 TTA
63368312 TTCACTCTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.56, C:0.03, G:0.05, T:0.36
Consensus pattern (18 bp):
TTAAAAAAATTGATTAAA
Found at i:63371687 original size:54 final size:54
Alignment explanation
Indices: 63371621--63371725 Score: 167
Period size: 54 Copynumber: 1.9 Consensus size: 54
63371611 CCCTTTATTA
*
63371621 TTATTATTTTTTAGAGCACCTAATTTCGACTAAAAGAAATCAAAATAAGGTTTG
1 TTATTATTTTTTAGAGCACCTAATTTCGACTAAAAGAAATCAAAACAAGGTTTG
* *
63371675 TTATT-TTATTTTATAGCACCTAATTTCGACTAAAATAAATCAAAACAAGGT
1 TTATTATT-TTTTAGAGCACCTAATTTCGACTAAAAGAAATCAAAACAAGGT
63371726 CGAATGGACG
Statistics
Matches: 47, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
53 2 0.04
54 45 0.96
ACGTcount: A:0.40, C:0.12, G:0.10, T:0.37
Consensus pattern (54 bp):
TTATTATTTTTTAGAGCACCTAATTTCGACTAAAAGAAATCAAAACAAGGTTTG
Found at i:63373083 original size:8 final size:9
Alignment explanation
Indices: 63373058--63373087 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
63373048 TAACAATTCA
63373058 TTCTTTTCTT
1 TTCTTTT-TT
63373068 TTCTTTTTT
1 TTCTTTTTT
63373077 TTCTTTTTT
1 TTCTTTTTT
63373086 TT
1 TT
63373088 TAAATTTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 13 0.65
10 7 0.35
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (9 bp):
TTCTTTTTT
Found at i:63381871 original size:25 final size:25
Alignment explanation
Indices: 63381839--63381892 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 25
63381829 ATATGGTCCC
*
63381839 TAATACGAGCCTTCCAGACCTAAAA
1 TAATACGAGCCCTCCAGACCTAAAA
* *
63381864 TAATACGAGCCCTCGAGGCCTAAAA
1 TAATACGAGCCCTCCAGACCTAAAA
63381889 TAAT
1 TAAT
63381893 CATTAGAAGC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.39, C:0.26, G:0.15, T:0.20
Consensus pattern (25 bp):
TAATACGAGCCCTCCAGACCTAAAA
Found at i:63383395 original size:28 final size:28
Alignment explanation
Indices: 63383351--63383407 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
63383341 AATCTGGGCC
63383351 TAAGTCCTTTTTCAGTATCAGATCCAGT
1 TAAGTCCTTTTTCAGTATCAGATCCAGT
*
63383379 TAAGTCCTTTTTTAGTATCAGATCCAGT
1 TAAGTCCTTTTTCAGTATCAGATCCAGT
63383407 T
1 T
63383408 TCAGTTAAGG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.25, C:0.19, G:0.14, T:0.42
Consensus pattern (28 bp):
TAAGTCCTTTTTCAGTATCAGATCCAGT
Found at i:63388132 original size:46 final size:45
Alignment explanation
Indices: 63388031--63388235 Score: 182
Period size: 46 Copynumber: 4.4 Consensus size: 45
63388021 CAGTGCCATG
* * * * *
63388031 TCCCAGACATGGTCTTACACTGAC-ACCTCTCGTA-GCTGATGCATG
1 TCCCAGACAT-GTCTTACACTGGCTTCATCTCG-AGGCCGATGCATA
* *
63388076 TCCCAAACATGTCTTACACTGGCTTACATCTCGAGGCCGATACATA
1 TCCCAGACATGTCTTACACTGGCTT-CATCTCGAGGCCGATGCATA
* * * *
63388122 TCCCAGACATGTCTTACACTAGCACTCATCTCAATGCCGATGCCATA
1 TCCCAGACATGTCTTACACTGGC-TTCATCTCGAGGCCGATG-CATA
* * * *
63388169 TCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCCAATGCATG
1 TCCCAGACAT-GTCTTACACTGGCT-TCAT-CTCGAGGCCGATGCATA
63388216 TCCCAGACATGTCTTACACT
1 TCCCAGACATGTCTTACACT
63388236 AGCTCACAAT
Statistics
Matches: 131, Mismatches: 21, Indels: 15
0.78 0.13 0.09
Matches are distributed among these distances:
44 12 0.09
45 10 0.08
46 58 0.44
47 28 0.21
48 22 0.17
49 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.27
Consensus pattern (45 bp):
TCCCAGACATGTCTTACACTGGCTTCATCTCGAGGCCGATGCATA
Found at i:63388184 original size:94 final size:90
Alignment explanation
Indices: 63388031--63388238 Score: 226
Period size: 94 Copynumber: 2.3 Consensus size: 90
63388021 CAGTGCCATG
* * *
63388031 TCCCAGACATGGTCTTACACT-GACACCTCTCGTAGCTGATGCATGTCCCAAACATGTCTTACAC
1 TCCCAGACAT-GTCTTACACTAG-CACCTCTCATAGCCGATGCATATCCCAAACATGTCTTACAC
* *
63388095 TGGCT-TACAT-CTCGAGGCCGATACATA
64 TGGCTCT-CATAAT-GAGGCCAATACATA
*
63388122 TCCCAGACATGTCTTACACTAGCACTCATCTCA-ATGCCGATGCCATATCCCAGACATGGTCTTA
1 TCCCAGACATGTCTTACACTAGCAC-C-TCTCATA-GCCGATG-CATATCCCAAACAT-GTCTTA
* * *
63388186 CACTGGCTCTCATAATGTGGCCAATGCATG
61 CACTGGCTCTCATAATGAGGCCAATACATA
63388216 TCCCAGACATGTCTTACACTAGC
1 TCCCAGACATGTCTTACACTAGC
63388239 TCACAATAAC
Statistics
Matches: 100, Mismatches: 9, Indels: 13
0.82 0.07 0.11
Matches are distributed among these distances:
90 13 0.13
91 13 0.13
92 10 0.10
93 12 0.12
94 50 0.50
95 2 0.02
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.26
Consensus pattern (90 bp):
TCCCAGACATGTCTTACACTAGCACCTCTCATAGCCGATGCATATCCCAAACATGTCTTACACTG
GCTCTCATAATGAGGCCAATACATA
Found at i:63391817 original size:25 final size:25
Alignment explanation
Indices: 63391783--63391834 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
63391773 ATAAACAAAG
63391783 TAAGCTATTAAGCTTAGTAAGCTCA
1 TAAGCTATTAAGCTTAGTAAGCTCA
63391808 TAAGCTATTAAGCTTAGTAAGCTCA
1 TAAGCTATTAAGCTTAGTAAGCTCA
63391833 TA
1 TA
63391835 TGGCTAAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33
Consensus pattern (25 bp):
TAAGCTATTAAGCTTAGTAAGCTCA
Found at i:63396394 original size:46 final size:46
Alignment explanation
Indices: 63396327--63396594 Score: 230
Period size: 46 Copynumber: 5.8 Consensus size: 46
63396317 TATTTGGGCA
*
63396327 TCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
63396373 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
* * *
63396418 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATTGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * * *
63396466 TCTGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGACA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-ACG
* *
63396513 TCCGAGCTCGTTGAGTTGAGTCC-AGTTCACTTATGGATTCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
63396558 -CTCGAGCTCGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
63396595 GCGGGTGACA
Statistics
Matches: 179, Mismatches: 25, Indels: 36
0.75 0.10 0.15
Matches are distributed among these distances:
42 3 0.02
43 8 0.04
44 1 0.01
45 27 0.15
46 76 0.42
47 52 0.29
48 3 0.02
49 3 0.02
50 4 0.02
51 2 0.01
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:63396440 original size:47 final size:47
Alignment explanation
Indices: 63396373--63396540 Score: 195
Period size: 47 Copynumber: 3.6 Consensus size: 47
63396363 GATGCGAACG
63396373 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
* * * *
63396420 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATTGATGCGAA-T--G--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCA
* *
63396466 TCTGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGACA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
*
63396513 TCCGAGCTCGTTGAGTTGAGTCC-AGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
63396541 ACTTATGGAT
Statistics
Matches: 100, Mismatches: 12, Indels: 19
0.76 0.09 0.15
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 2 0.02
46 32 0.32
47 49 0.49
48 3 0.03
50 5 0.05
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
Found at i:63396482 original size:93 final size:93
Alignment explanation
Indices: 63396323--63396587 Score: 426
Period size: 93 Copynumber: 2.9 Consensus size: 93
63396313 CGGATATTTG
* * *
63396323 GGCATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCTGAACTCGTTGAG
63396388 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
63396416 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATTGATGCGAATGTCTGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCTGAACTCGTTGAG
63396481 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * *
63396509 GACATCCGAGCTCGTTGAGTTGAGTCC-AGTTCACTTATGGATTCGAACG-CTCGAGCTCGTTGA
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCT-GAACTCGTTGA
*
63396572 GTTGAGTCTGAGTTCG
65 GTTGAGTCCGAGTTCG
63396588 CTTATGGGCG
Statistics
Matches: 160, Mismatches: 11, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
91 2 0.01
92 44 0.28
93 114 0.71
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (93 bp):
GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCTGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:63399600 original size:30 final size:29
Alignment explanation
Indices: 63399566--63399623 Score: 98
Period size: 30 Copynumber: 2.0 Consensus size: 29
63399556 CATAGTATCG
63399566 TATCTTGGATTTCTTTATTCTGGGTTTCTC
1 TATCTTGGATTTCTTTATTC-GGGTTTCTC
*
63399596 TATCTTGGATTTCTTTATTCGGTTTTCT
1 TATCTTGGATTTCTTTATTCGGGTTTCT
63399624 TGTTATCTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
29 7 0.26
30 20 0.74
ACGTcount: A:0.10, C:0.16, G:0.16, T:0.59
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCGGGTTTCTC
Found at i:63399608 original size:15 final size:15
Alignment explanation
Indices: 63399566--63399609 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
63399556 CATAGTATCG
*
63399566 TATCTTGGATTTCTT
1 TATCTTGGATTTCTC
*
63399581 TAT-TCTGGGTTTCTC
1 TATCT-TGGATTTCTC
63399596 TATCTTGGATTTCT
1 TATCTTGGATTTCT
63399610 TTATTCGGTT
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
14 1 0.04
15 22 0.92
16 1 0.04
ACGTcount: A:0.11, C:0.16, G:0.16, T:0.57
Consensus pattern (15 bp):
TATCTTGGATTTCTC
Found at i:63399624 original size:14 final size:14
Alignment explanation
Indices: 63399572--63399624 Score: 52
Period size: 15 Copynumber: 3.6 Consensus size: 14
63399562 ATCGTATCTT
63399572 GGATTTCTTTATTC
1 GGATTTCTTTATTC
* * *
63399586 TGGGTTTCTCTATCTT
1 -GGATTTCTTTAT-TC
63399602 GGATTTCTTTATTC
1 GGATTTCTTTATTC
*
63399616 GGTTTTCTT
1 GGATTTCTT
63399625 GTTATCTTTA
Statistics
Matches: 30, Mismatches: 7, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
14 9 0.30
15 20 0.67
16 1 0.03
ACGTcount: A:0.09, C:0.15, G:0.17, T:0.58
Consensus pattern (14 bp):
GGATTTCTTTATTC
Found at i:63403474 original size:29 final size:29
Alignment explanation
Indices: 63403439--63403515 Score: 91
Period size: 29 Copynumber: 2.6 Consensus size: 29
63403429 CATGAGATTG
* *
63403439 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGGGTTTAAAGTGCACA
* * **
63403468 GCACTAAGTGTGTGAGTTTAAAGTGCATG
1 GCACTAAGTGTGCGGGTTTAAAGTGCACA
63403497 GCACTAAGTGTGCGCGGTT
1 GCACTAAGTGTGCG-GGTT
63403516 GATTATTAAG
Statistics
Matches: 39, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
29 36 0.92
30 3 0.08
ACGTcount: A:0.25, C:0.14, G:0.31, T:0.30
Consensus pattern (29 bp):
GCACTAAGTGTGCGGGTTTAAAGTGCACA
Found at i:63403791 original size:173 final size:174
Alignment explanation
Indices: 63403468--63403794 Score: 584
Period size: 173 Copynumber: 1.9 Consensus size: 174
63403458 AAATTGTACA
* *
63403468 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
* *
63403533 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
63403598 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* *
63403642 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGTGGTTGATTACTAAACATTATG
1 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
*
63403707 TGTGC-AACCCAGTATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
63403771 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
63403795 ACCTTGAGTT
Statistics
Matches: 146, Mismatches: 7, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
173 80 0.55
174 66 0.45
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:63405464 original size:46 final size:46
Alignment explanation
Indices: 63405411--63405679 Score: 214
Period size: 46 Copynumber: 5.8 Consensus size: 46
63405401 TATTTGGGCA
*
63405411 TCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * *
63405457 TCCGAACTCGTTGAGTTGAGTTCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
* * * *
63405502 CATCAGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGAGGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
** * *
63405550 TCCGAACTTATTGAGTTGAGTCCGAG-T---TTGTGAGATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAAC---G
*
63405595 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * *
63405643 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
63405680 GCGGGTGACA
Statistics
Matches: 176, Mismatches: 27, Indels: 40
0.72 0.11 0.16
Matches are distributed among these distances:
42 10 0.06
43 7 0.04
45 5 0.03
46 84 0.48
47 48 0.27
48 5 0.03
50 7 0.04
51 10 0.06
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:63405523 original size:47 final size:47
Alignment explanation
Indices: 63405457--63405625 Score: 164
Period size: 47 Copynumber: 3.6 Consensus size: 47
63405447 GATGCGAACG
* * *
63405457 TCCGAACTCGTTGAGTTGAGTTCGAGTTCGTGAGATGTAACTAGGCA
1 TCCGAGCTCATTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
* * * * * * * *
63405504 TCAGAGCTCATTGAGTTGAGTCCGAGTTCACT--TATGGAGGCGA-ACG
1 TCCGAGCTCATTGAGTTGAGTCCGAGTTC-GTGAGATGTA-ACTAGGCA
* * *
63405550 TCCGAACTTATTGAGTTGAGTCCGAGTTTGTGAGATGTAACTAGGCA
1 TCCGAGCTCATTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
*
63405597 TCCGAGCTCGTTGAGTTGAGTCCGAGTTC
1 TCCGAGCTCATTGAGTTGAGTCCGAGTTC
63405626 ACTTATGGAT
Statistics
Matches: 91, Mismatches: 26, Indels: 10
0.72 0.20 0.08
Matches are distributed among these distances:
45 1 0.01
46 32 0.35
47 57 0.63
48 1 0.01
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.30
Consensus pattern (47 bp):
TCCGAGCTCATTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
Found at i:63405566 original size:93 final size:93
Alignment explanation
Indices: 63405421--63405672 Score: 407
Period size: 93 Copynumber: 2.7 Consensus size: 93
63405411 TCCGAACTTG
63405421 TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTTGAGTTCGAGTTC
1 TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTTGAGTTCGAGTTC
63405486 GTGAGATGTAACTAGGCATCAGAGCTCA
66 GTGAGATGTAACTAGGCATCAGAGCTCA
* ** * *
63405514 TTGAGTTGAGTCCGAGTTCACTTATGGAGGCGAACGTCCGAACTTATTGAGTTGAGTCCGAGTTT
1 TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTTGAGTTCGAGTTC
* *
63405579 GTGAGATGTAACTAGGCATCCGAGCTCG
66 GTGAGATGTAACTAGGCATCAGAGCTCA
* *
63405607 TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGTTGAG-TCTGAGTT
1 TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTTGAGTTC-GAGTT
63405671 CG
65 CG
63405673 CTTATGGGCG
Statistics
Matches: 144, Mismatches: 14, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
92 1 0.01
93 143 0.99
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.29
Consensus pattern (93 bp):
TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTTGAGTTCGAGTTC
GTGAGATGTAACTAGGCATCAGAGCTCA
Found at i:63407077 original size:16 final size:16
Alignment explanation
Indices: 63407058--63407091 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
63407048 TAATTATCTA
63407058 AACTAAGAATTCATAG
1 AACTAAGAATTCATAG
63407074 AACTAAGAATTCATAG
1 AACTAAGAATTCATAG
63407090 AA
1 AA
63407092 AATAGAATTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.53, C:0.12, G:0.12, T:0.24
Consensus pattern (16 bp):
AACTAAGAATTCATAG
Found at i:63419086 original size:39 final size:39
Alignment explanation
Indices: 63419040--63419179 Score: 192
Period size: 39 Copynumber: 3.6 Consensus size: 39
63419030 ATAGTGATTT
* ** *
63419040 GAAGCCCGAAGTCTAGTTGAAGCACATAAGTGCTAAACA
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACA
* * * *
63419079 GATGCCCGAAGGCTAACTAAAGCACACAAGTGTTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACA
63419118 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAAC-
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACA
63419156 GAAAGCCCGAAGGCTAACTGAAGC
1 G-AAGCCCGAAGGCTAACTGAAGC
63419180 TCATCAGAGC
Statistics
Matches: 89, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
38 1 0.01
39 88 0.99
ACGTcount: A:0.39, C:0.24, G:0.24, T:0.14
Consensus pattern (39 bp):
GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACA
Found at i:63435439 original size:42 final size:42
Alignment explanation
Indices: 63435380--63435464 Score: 143
Period size: 42 Copynumber: 2.0 Consensus size: 42
63435370 ACCTAATTGT
*
63435380 AAAGTCGAGTTTGGTATTGAGCTTTATCCTAGTACTACACTG
1 AAAGTAGAGTTTGGTATTGAGCTTTATCCTAGTACTACACTG
* *
63435422 AAAGTAGAGTTTGGTATTGAGCTTTATCTTAGTACTACGCTG
1 AAAGTAGAGTTTGGTATTGAGCTTTATCCTAGTACTACACTG
63435464 A
1 A
63435465 CATCTATAAT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.27, C:0.14, G:0.22, T:0.36
Consensus pattern (42 bp):
AAAGTAGAGTTTGGTATTGAGCTTTATCCTAGTACTACACTG
Found at i:63439279 original size:48 final size:48
Alignment explanation
Indices: 63439097--63439280 Score: 208
Period size: 48 Copynumber: 3.8 Consensus size: 48
63439087 TCTTATATTG
* * * ** *
63439097 ATGCCATGTCAC-AAACATGGTTTTACACGAAATCACATATCGATGCCA
1 ATGCCATGTC-CTAGACATGGTCTTACATGGGATCTCATATCGATGCCA
* * * * * *
63439145 ATGCCATATCTTAGATATGGTCTTACATGAGATCTAATATCAATGCCA
1 ATGCCATGTCCTAGACATGGTCTTACATGGGATCTCATATCGATGCCA
* * *
63439193 ATGCCATGTCCCAGACATGGTCTTACATGGGATATCATATCGATACCA
1 ATGCCATGTCCTAGACATGGTCTTACATGGGATCTCATATCGATGCCA
*
63439241 ATGCCATGTCCTAGACATGGTCTTACATGGGACCTCATAT
1 ATGCCATGTCCTAGACATGGTCTTACATGGGATCTCATAT
63439281 AACCGTAATG
Statistics
Matches: 113, Mismatches: 22, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
48 113 1.00
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (48 bp):
ATGCCATGTCCTAGACATGGTCTTACATGGGATCTCATATCGATGCCA
Found at i:63439874 original size:21 final size:22
Alignment explanation
Indices: 63439844--63439884 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
63439834 TAGTAAAAGT
63439844 CATTTCTCTAACCA-TAAACATG
1 CATTTCTCT-ACCATTAAACATG
63439866 CATTT-TCTACCATTAAACA
1 CATTTCTCTACCATTAAACA
63439885 CAAAAATACA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.22
21 9 0.50
22 5 0.28
ACGTcount: A:0.37, C:0.27, G:0.02, T:0.34
Consensus pattern (22 bp):
CATTTCTCTACCATTAAACATG
Found at i:63441492 original size:15 final size:15
Alignment explanation
Indices: 63441472--63441502 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
63441462 AATCGATGAA
63441472 AGTTTTGAATTTCAC
1 AGTTTTGAATTTCAC
63441487 AGTTTTGAATTTCAC
1 AGTTTTGAATTTCAC
63441502 A
1 A
63441503 ACTATTCTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.29, C:0.13, G:0.13, T:0.45
Consensus pattern (15 bp):
AGTTTTGAATTTCAC
Found at i:63445862 original size:46 final size:46
Alignment explanation
Indices: 63445795--63445969 Score: 219
Period size: 46 Copynumber: 3.8 Consensus size: 46
63445785 AACCCGCCCC
* *
63445795 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCATCCA
* * * *
63445841 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG-TTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG-TTCGCATCCA
* * **
63445887 TTTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 --TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCATCCA
63445934 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
63445970 CTCAACCATC
Statistics
Matches: 106, Mismatches: 18, Indels: 10
0.79 0.13 0.07
Matches are distributed among these distances:
45 2 0.02
46 68 0.64
47 34 0.32
48 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCATCCA
Found at i:63445907 original size:93 final size:93
Alignment explanation
Indices: 63445800--63445970 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
63445790 GCCCCTAAGT
***
63445800 GAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
63445865 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
63445893 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
63445958 CGAGTTCGGATGC
66 CGAGTTCGGATGC
63445971 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:63450667 original size:86 final size:85
Alignment explanation
Indices: 63450557--63450713 Score: 192
Period size: 86 Copynumber: 1.8 Consensus size: 85
63450547 TTCTGATGTG
* * *
63450557 TGATTTCGTGTAAGACCACATCTGGAACATTGGCATCGAT-TTGAGATTTACGTGTAAGACCATG
1 TGATTTCGTGTAAGACCACATCTGGAACAGTGGCATCGATATT-AGA-TTACATGTAAGACCACG
*
63450621 TGTGGGACATCGGCATCGTATT
64 TCTGGGACATCGGCATCGTATT
** * * *
63450643 TGATTTCGTGTAAGAACC-TGTCTGGGATAGTGGCATCGATATTTGATTACATGTAAGACCACGT
1 TGATTTCGTGTAAG-ACCACATCTGGAACAGTGGCATCGATATTAGATTACATGTAAGACCACGT
63450707 CTGGGAC
65 CTGGGAC
63450714 GTTGGCATTG
Statistics
Matches: 60, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
85 22 0.37
86 33 0.55
87 5 0.08
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.31
Consensus pattern (85 bp):
TGATTTCGTGTAAGACCACATCTGGAACAGTGGCATCGATATTAGATTACATGTAAGACCACGTC
TGGGACATCGGCATCGTATT
Found at i:63450720 original size:43 final size:43
Alignment explanation
Indices: 63450557--63450721 Score: 165
Period size: 43 Copynumber: 3.8 Consensus size: 43
63450547 TTCTGATGTG
* * *
63450557 TGATTTCGTGTAAGACCACATCTGGAACATTGGCATCGAT-TT
1 TGATTACGTGTAAGACCACGTCTGGGACATTGGCATCGATATT
* * * *
63450599 GAGATTTACGTGTAAGACCATGTGTGGGACATCGGCATCG-TATT
1 -TGA-TTACGTGTAAGACCACGTCTGGGACATTGGCATCGATATT
* * * *
63450643 TGATTTCGTGTAAGAACC-TGTCTGGGATAGTGGCATCGATATT
1 TGATTACGTGTAAG-ACCACGTCTGGGACATTGGCATCGATATT
* *
63450686 TGATTACATGTAAGACCACGTCTGGGACGTTGGCAT
1 TGATTACGTGTAAGACCACGTCTGGGACATTGGCAT
63450722 TGTATGAGCT
Statistics
Matches: 98, Mismatches: 19, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
42 29 0.30
43 38 0.39
44 31 0.32
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.32
Consensus pattern (43 bp):
TGATTACGTGTAAGACCACGTCTGGGACATTGGCATCGATATT
Found at i:63457292 original size:24 final size:25
Alignment explanation
Indices: 63457225--63457292 Score: 72
Period size: 24 Copynumber: 2.8 Consensus size: 25
63457215 GTTGATGAAG
63457225 AGTAAGCTCTAT-CGAGCTG-GAAAC
1 AGTAAGCTCT-TGCGAGCTGAGAAAC
* *
63457249 AGTAAGCTC-TGACAAGCTGAG-AAT
1 AGTAAGCTCTTG-CGAGCTGAGAAAC
63457273 AGTAAGCTCTTGCGAGCTGA
1 AGTAAGCTCTTGCGAGCTGA
63457293 TATATTGGTA
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
22 1 0.03
24 33 0.89
25 3 0.08
ACGTcount: A:0.32, C:0.19, G:0.26, T:0.22
Consensus pattern (25 bp):
AGTAAGCTCTTGCGAGCTGAGAAAC
Found at i:63458053 original size:14 final size:14
Alignment explanation
Indices: 63458034--63458060 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
63458024 GAGCTAGCTA
63458034 GAATACGAAGCAAC
1 GAATACGAAGCAAC
63458048 GAATACGAAGCAA
1 GAATACGAAGCAA
63458061 TGATCACAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.19, G:0.22, T:0.07
Consensus pattern (14 bp):
GAATACGAAGCAAC
Found at i:63471930 original size:40 final size:40
Alignment explanation
Indices: 63471882--63471971 Score: 101
Period size: 40 Copynumber: 2.2 Consensus size: 40
63471872 CGACGATAAA
* * *
63471882 TCGACTATATTTTCCACTAAGTGTGC-GTTTCAAAATAGCT
1 TCGACTATATATACCACTAAGTGTGCGGATT-AAAATAGCT
* * * *
63471922 TCGGCTATAAATAGCACTAAGTGTGCGGATTAGAATAGCT
1 TCGACTATATATACCACTAAGTGTGCGGATTAAAATAGCT
63471962 TCGACTATAT
1 TCGACTATAT
63471972 GAGGCACTAA
Statistics
Matches: 40, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
40 37 0.93
41 3 0.08
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33
Consensus pattern (40 bp):
TCGACTATATATACCACTAAGTGTGCGGATTAAAATAGCT
Found at i:63471979 original size:40 final size:40
Alignment explanation
Indices: 63471896--63471988 Score: 102
Period size: 40 Copynumber: 2.3 Consensus size: 40
63471886 CTATATTTTC
* *
63471896 CACTAAGTGTGC-GTTTCAAAATAGCTTCGGCTATAAATAG
1 CACTAAGTGTGCGGATTCAAAATAGCTTCGACTAT-AATAG
*
63471936 CACTAAGTGTGCGGATT-AGAATAGCTTCGACTAT-ATGAGG
1 CACTAAGTGTGCGGATTCAAAATAGCTTCGACTATAAT-A-G
*
63471976 CACTAATTGTGCG
1 CACTAAGTGTGCG
63471989 ATACCAAGAT
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
38 2 0.04
39 1 0.02
40 40 0.87
41 3 0.07
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (40 bp):
CACTAAGTGTGCGGATTCAAAATAGCTTCGACTATAATAG
Found at i:63478082 original size:38 final size:38
Alignment explanation
Indices: 63478039--63478114 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
63478029 TTCATCCTTT
*
63478039 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTGTTGGCCGAAAATTCTAAGGAAGGAGGAA
63478077 TTCATTTCTGTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTGTTGGCCGAAAATTCTAAGGAAGGAGGAA
63478115 GGAGTTCTTG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.32, C:0.13, G:0.25, T:0.30
Consensus pattern (38 bp):
TTCATTTCTGTTGGCCGAAAATTCTAAGGAAGGAGGAA
Found at i:63479395 original size:40 final size:40
Alignment explanation
Indices: 63479301--63479445 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
63479291 TACTCGAATG
*
63479301 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
63479342 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
63479382 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
63479422 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
63479446 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:63549140 original size:27 final size:27
Alignment explanation
Indices: 63549110--63549169 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
63549100 GAGCATAATC
**
63549110 GTCATTCTACCATACAGGGTTATTACA
1 GTCATTCTACCATACAGGGGCATTACA
* * *
63549137 GTCATTTTGCCCTACAGGGGCATTACA
1 GTCATTCTACCATACAGGGGCATTACA
63549164 GTCATT
1 GTCATT
63549170 TTCAAAATCA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.33
Consensus pattern (27 bp):
GTCATTCTACCATACAGGGGCATTACA
Found at i:63566287 original size:51 final size:51
Alignment explanation
Indices: 63566167--63566366 Score: 183
Period size: 50 Copynumber: 4.0 Consensus size: 51
63566157 TGATCTATTG
* * * * * * *
63566167 TGAGCTCACGTGTGTAGTATTAAGTGCTGGCTACAACGTGTACC-GAATTAT
1 TGAGATCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAG-ATAAC
* * * * *
63566218 TG-G-TCGCATGTGTAGTACTAAATGCAGGCTACTATGCGTACCCGATAAC
1 TGAGATCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAAC
** * * * **
63566267 TTCGATCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGAT-GG
1 TGAGATCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAAC
*
63566317 TGAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAA
1 TGAGATCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAA
63566367 TTGGTCGCAT
Statistics
Matches: 117, Mismatches: 28, Indels: 8
0.76 0.18 0.05
Matches are distributed among these distances:
49 35 0.30
50 45 0.38
51 37 0.32
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (51 bp):
TGAGATCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAAC
Found at i:63576598 original size:22 final size:22
Alignment explanation
Indices: 63576570--63576617 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
63576560 GTTGCTGCGA
* *
63576570 TATTTACGGTC-TTTAGTCGTTC
1 TATTTACGG-CGTTGAGCCGTTC
63576592 TATTTACGGCGTTGAGCCGTTC
1 TATTTACGGCGTTGAGCCGTTC
63576614 TATT
1 TATT
63576618 GTCTCAATGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 1 0.04
22 22 0.96
ACGTcount: A:0.15, C:0.19, G:0.21, T:0.46
Consensus pattern (22 bp):
TATTTACGGCGTTGAGCCGTTC
Found at i:63576703 original size:15 final size:15
Alignment explanation
Indices: 63576683--63576712 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
63576673 TATCCCCACA
63576683 TGGTGTGTTGGTTGG
1 TGGTGTGTTGGTTGG
63576698 TGGTGTGTTGGTTGG
1 TGGTGTGTTGGTTGG
63576713 ACTGGGCTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.00, C:0.00, G:0.53, T:0.47
Consensus pattern (15 bp):
TGGTGTGTTGGTTGG
Found at i:63576783 original size:27 final size:28
Alignment explanation
Indices: 63576752--63576804 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
63576742 CATCTGATAA
*
63576752 TGATTCT-GTATTGGGCTTAGGCCCACC
1 TGATTCTAGTATTGGGCTAAGGCCCACC
*
63576779 TGATTCTATTATTGGGCTAAGGCCCA
1 TGATTCTAGTATTGGGCTAAGGCCCA
63576805 TCTAATACTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 7 0.30
28 16 0.70
ACGTcount: A:0.19, C:0.23, G:0.25, T:0.34
Consensus pattern (28 bp):
TGATTCTAGTATTGGGCTAAGGCCCACC
Found at i:63576815 original size:28 final size:28
Alignment explanation
Indices: 63576760--63576816 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
63576750 AATGATTCTG
* * *
63576760 TATTGGGCTTAGGCCCACCTGATTCTAT
1 TATTGGGCTAAGGCCCACCTAATACTAT
*
63576788 TATTGGGCTAAGGCCCATCTAATACTAT
1 TATTGGGCTAAGGCCCACCTAATACTAT
63576816 T
1 T
63576817 TCTGTGATGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.23, C:0.23, G:0.19, T:0.35
Consensus pattern (28 bp):
TATTGGGCTAAGGCCCACCTAATACTAT
Found at i:63582067 original size:15 final size:14
Alignment explanation
Indices: 63582022--63582069 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 14
63582012 TATGATATGG
*
63582022 TATCTTGGATTTCTG
1 TATCTTGGA-TTCTT
*
63582037 TACCTTGGATATCTT
1 TATCTTGGAT-TCTT
63582052 TATCTTGGATTCCTT
1 TATCTTGGATT-CTT
63582067 TAT
1 TAT
63582070 AACACCCCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
14 2 0.07
15 26 0.93
ACGTcount: A:0.17, C:0.17, G:0.15, T:0.52
Consensus pattern (14 bp):
TATCTTGGATTCTT
Found at i:63594837 original size:48 final size:48
Alignment explanation
Indices: 63594780--63594912 Score: 185
Period size: 48 Copynumber: 2.8 Consensus size: 48
63594770 TTGGGTTAGG
* *
63594780 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGTATCGATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATA
* *
63594828 TGTGATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCAATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATA
* ** * *
63594876 TGAGATTTCGTGTAAGACCATGTCTAGGACATGGCAT
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCAT
63594913 CGATATGAGA
Statistics
Matches: 74, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 74 1.00
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (48 bp):
TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATA
Found at i:63605169 original size:19 final size:15
Alignment explanation
Indices: 63605125--63605159 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
63605115 CGTTTAAGGG
63605125 CACACGGCCAAGGCA
1 CACACGGCCAAGGCA
63605140 CACACGGCCAAGGCA
1 CACACGGCCAAGGCA
63605155 CACAC
1 CACAC
63605160 CCGTGGCCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.34, C:0.43, G:0.23, T:0.00
Consensus pattern (15 bp):
CACACGGCCAAGGCA
Found at i:63616726 original size:18 final size:18
Alignment explanation
Indices: 63616677--63616713 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
63616667 CTAGGCCCAT
63616677 TACAATAACAGTAAACAG
1 TACAATAACAGTAAACAG
63616695 TACAATAACAGTAAACAG
1 TACAATAACAGTAAACAG
63616713 T
1 T
63616714 GCAGTAGCAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.54, C:0.16, G:0.11, T:0.19
Consensus pattern (18 bp):
TACAATAACAGTAAACAG
Found at i:63617108 original size:27 final size:27
Alignment explanation
Indices: 63617070--63617198 Score: 125
Period size: 27 Copynumber: 4.8 Consensus size: 27
63617060 CATCACGTAG
* *
63617070 GGGCAAAATAGTCATCTTACCTCCTAA
1 GGGCAAAATAGTCATCTTACCACATAA
* *
63617097 GGGCAAATTAGTCATTTTACCACATAA
1 GGGCAAAATAGTCATCTTACCACATAA
** * *
63617124 GGGCAAAACCGTCATTTTACCACATGA
1 GGGCAAAATAGTCATCTTACCACATAA
* * *
63617151 GGGCAAAATAGTTAGT-TTATCGCATAA
1 GGGCAAAATAGTCA-TCTTACCACATAA
* *
63617178 GGGAAAAATAGTCATTTTACC
1 GGGCAAAATAGTCATCTTACC
63617199 TTATAGAGGG
Statistics
Matches: 83, Mismatches: 17, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
26 1 0.01
27 81 0.98
28 1 0.01
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27
Consensus pattern (27 bp):
GGGCAAAATAGTCATCTTACCACATAA
Found at i:63617154 original size:54 final size:55
Alignment explanation
Indices: 63617074--63617226 Score: 139
Period size: 54 Copynumber: 2.8 Consensus size: 55
63617064 ACGTAGGGGC
* * * * *
63617074 AAAATAGTCATCTTACCTCCTA-AGGGCAAATTAGTCATTTTACCACATAAGGGC
1 AAAACAGTCATTTTACCACATAGAGGGCAAATTAGTCATTTTACCACATAAGGGA
* * * * * *
63617128 AAAACCGTCATTTTACCACAT-GAGGGCAAAATAGTTAGTTTATCGCATAAGGGA
1 AAAACAGTCATTTTACCACATAGAGGGCAAATTAGTCATTTTACCACATAAGGGA
* ** * **
63617182 AAAATAGTCATTTTACCTTATAGAGGGTATTTTAGTCATTTTACC
1 AAAACAGTCATTTTACCACATAGAGGGCAAATTAGTCATTTTACC
63617227 TGTGGGGGTA
Statistics
Matches: 75, Mismatches: 22, Indels: 3
0.75 0.22 0.03
Matches are distributed among these distances:
54 59 0.79
55 16 0.21
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31
Consensus pattern (55 bp):
AAAACAGTCATTTTACCACATAGAGGGCAAATTAGTCATTTTACCACATAAGGGA
Found at i:63617246 original size:54 final size:54
Alignment explanation
Indices: 63617188--63617293 Score: 142
Period size: 54 Copynumber: 2.0 Consensus size: 54
63617178 GGGAAAAATA
* * *
63617188 GTCATTTTACCTTATAGAGGGTATTTTAGTCATTTTACC-TGTGGGGGTATTTAG
1 GTCATTTTACCCTATAGA-GGTATTTCAGTCATTTTACCTTATGGGGGTATTTAG
* * *
63617242 GTCATTTTACCCTATTGAGGTATTTCGGTCATTTTTCCTTATGGGGGTATTT
1 GTCATTTTACCCTATAGAGGTATTTCAGTCATTTTACCTTATGGGGGTATTT
63617294 TAGTCTTTTT
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
53 17 0.38
54 28 0.62
ACGTcount: A:0.18, C:0.13, G:0.23, T:0.46
Consensus pattern (54 bp):
GTCATTTTACCCTATAGAGGTATTTCAGTCATTTTACCTTATGGGGGTATTTAG
Found at i:63617303 original size:27 final size:27
Alignment explanation
Indices: 63617186--63617303 Score: 123
Period size: 27 Copynumber: 4.4 Consensus size: 27
63617176 AAGGGAAAAA
*
63617186 TAGTCATTTTACCTTATAGAGGGTATTT
1 TAGTCATTTTACCTTAT-GGGGGTATTT
*
63617214 TAGTCATTTTACC-TGTGGGGGTA-TT
1 TAGTCATTTTACCTTATGGGGGTATTT
* * *
63617239 TAGGTCATTTTACCCTATTGAGGTATTT
1 TA-GTCATTTTACCTTATGGGGGTATTT
** *
63617267 CGGTCATTTTTCCTTATGGGGGTATTT
1 TAGTCATTTTACCTTATGGGGGTATTT
*
63617294 TAGTCTTTTT
1 TAGTCATTTT
63617304 CAGGTAAATA
Statistics
Matches: 73, Mismatches: 14, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
25 4 0.05
26 17 0.23
27 37 0.51
28 15 0.21
ACGTcount: A:0.18, C:0.13, G:0.21, T:0.48
Consensus pattern (27 bp):
TAGTCATTTTACCTTATGGGGGTATTT
Found at i:63638060 original size:42 final size:42
Alignment explanation
Indices: 63637970--63638121 Score: 180
Period size: 42 Copynumber: 3.6 Consensus size: 42
63637960 ACTAAGACTA
* *
63637970 CGTGTAAGACAATATCTGGGATATGGCATCG-TATGAGATTT
1 CGTGTAAGACCATATCTGGGACATGGCATCGATATGAGATTT
* * *
63638011 CGTGTAAGACCATATCTCGGACATGGCGTAGATATGAGATTT
1 CGTGTAAGACCATATCTGGGACATGGCATCGATATGAGATTT
* * * *
63638053 CGTGTAAGACCATAACTAGGCCATTGGCATCGATATGAGATTA
1 CGTGTAAGACCATATCTGGGACA-TGGCATCGATATGAGATTT
* * *
63638096 CATGTATGACCATATCTGGGATATGG
1 CGTGTAAGACCATATCTGGGACATGG
63638122 TATTGGTATG
Statistics
Matches: 92, Mismatches: 17, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
41 26 0.28
42 33 0.36
43 33 0.36
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.29
Consensus pattern (42 bp):
CGTGTAAGACCATATCTGGGACATGGCATCGATATGAGATTT
Found at i:63642645 original size:43 final size:43
Alignment explanation
Indices: 63642567--63642672 Score: 128
Period size: 43 Copynumber: 2.5 Consensus size: 43
63642557 TAAGTCTGAA
* * *
63642567 ATCAT-TCACCGGCATT-TTGCCT-CTTAGGCTTGAAGCCCGAT
1 ATCATCTCACCGGCATTATAGCATGC-TAGGCTCGAAGCCCGAT
* *
63642608 ATCATTTCACTGGCATTATAGCATGCTAGGCTCGAAGCCCGAT
1 ATCATCTCACCGGCATTATAGCATGCTAGGCTCGAAGCCCGAT
*
63642651 ATTATCTCACCGGCATTATAGC
1 ATCATCTCACCGGCATTATAGC
63642673 CTACGAGGCC
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
41 5 0.09
42 10 0.18
43 39 0.71
44 1 0.02
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (43 bp):
ATCATCTCACCGGCATTATAGCATGCTAGGCTCGAAGCCCGAT
Found at i:63642691 original size:43 final size:43
Alignment explanation
Indices: 63642598--63642692 Score: 118
Period size: 43 Copynumber: 2.2 Consensus size: 43
63642588 TCTTAGGCTT
* * * * *
63642598 GAAGCCCGATATCATTTCACTGGCATTATAGCATGCTAGGCTC
1 GAAGCCCGATATCATCTCACCGGCATTATAGCATACGAGGCCC
* *
63642641 GAAGCCCGATATTATCTCACCGGCATTATAGCCTACGAGGCCC
1 GAAGCCCGATATCATCTCACCGGCATTATAGCATACGAGGCCC
*
63642684 GAGGCCCGA
1 GAAGCCCGA
63642693 AGCCCGATAA
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.22
Consensus pattern (43 bp):
GAAGCCCGATATCATCTCACCGGCATTATAGCATACGAGGCCC
Found at i:63643641 original size:70 final size:70
Alignment explanation
Indices: 63643517--63643648 Score: 201
Period size: 70 Copynumber: 1.9 Consensus size: 70
63643507 TAGCACATAA
* * * * *
63643517 CACCATGATTTTGTCCTAATTTGGACAGCCAATAATTTACAGTATTACAACAGCATATTAATCAG
1 CACCATAAATTTGTCCTAATTTGGACAGCCAATAATTTACAATATCACAACAGCAAATTAATCAG
63643582 CTAAG
66 CTAAG
* *
63643587 CACCATAAATTTGTCCTAATTTGGACAGCCACTAATTTACAATATCACAGCAGCAAATTAAT
1 CACCATAAATTTGTCCTAATTTGGACAGCCAATAATTTACAATATCACAACAGCAAATTAAT
63643649 TAGTAATAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
70 55 1.00
ACGTcount: A:0.37, C:0.21, G:0.11, T:0.30
Consensus pattern (70 bp):
CACCATAAATTTGTCCTAATTTGGACAGCCAATAATTTACAATATCACAACAGCAAATTAATCAG
CTAAG
Found at i:63648209 original size:28 final size:29
Alignment explanation
Indices: 63648177--63648238 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 29
63648167 TACATACGTG
* *
63648177 CATATGGCCCACTAGGCTC-AATCTCATT
1 CATATGGCCCACTAGGCCCAAATCACATT
*
63648205 CATATGGCCCATTAGGCCCAAATCACATT
1 CATATGGCCCACTAGGCCCAAATCACATT
63648234 CATAT
1 CATAT
63648239 ACATGCTTTC
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
28 17 0.57
29 13 0.43
ACGTcount: A:0.29, C:0.31, G:0.13, T:0.27
Consensus pattern (29 bp):
CATATGGCCCACTAGGCCCAAATCACATT
Done.