Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 185 of 295
Found at i:63652481 original size:42 final size:42
Alignment explanation
Indices: 63652340--63652499 Score: 144
Period size: 47 Copynumber: 3.6 Consensus size: 42
63652330 TGAGCATCCG
* *
63652340 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCAC-TATGGATGCGAA---CCA
* * *
63652386 AACTCGTTGAGTTGAGTCCGAGTTCGTGA-GATGTAACTAG-GCATCCA
1 AACTCGTTGAGTTGAGTCCGAGTTC---ACTATG-GA-T-GCG-AACCA
*
63652433 AACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAACCC
1 AACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAACCA
*
63652475 AGCTCGTTGAGTTGAGTCCGAGTTC
1 AACTCGTTGAGTTGAGTCCGAGTTC
63652500 GCTTATGGGC
Statistics
Matches: 95, Mismatches: 10, Indels: 22
0.75 0.08 0.17
Matches are distributed among these distances:
42 28 0.29
43 2 0.02
44 2 0.02
45 3 0.03
46 25 0.26
47 30 0.32
48 1 0.01
49 2 0.02
50 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.29
Consensus pattern (42 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAACCA
Found at i:63655451 original size:15 final size:15
Alignment explanation
Indices: 63655412--63655491 Score: 76
Period size: 15 Copynumber: 5.4 Consensus size: 15
63655402 GTATCTTGGG
*
63655412 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
63655427 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
63655442 TTTCTTTATT-TCGGG
1 TTTCTTTATTCT-GGA
*
63655457 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
63655472 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
63655486 TTTCTT
1 TTTCTT
63655492 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 9
0.76 0.11 0.13
Matches are distributed among these distances:
14 10 0.19
15 40 0.75
16 3 0.06
ACGTcount: A:0.10, C:0.17, G:0.14, T:0.59
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:63657988 original size:47 final size:47
Alignment explanation
Indices: 63657870--63658039 Score: 192
Period size: 47 Copynumber: 3.7 Consensus size: 47
63657860 GGATGGTTGA
* *
63657870 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCAAAG
* *
63657918 G--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCAA--AG
* *
63657963 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT-ATGGATGCGAAC
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCAAAG
*
63658010 GC--CCGAGCTCGTTGAGTTGAGTCCGAGTTC
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC
63658040 GCTTATGGGC
Statistics
Matches: 106, Mismatches: 9, Indels: 17
0.80 0.07 0.13
Matches are distributed among these distances:
43 6 0.06
45 31 0.29
46 29 0.27
47 33 0.31
48 2 0.02
49 5 0.05
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (47 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCAAAG
Found at i:63660883 original size:42 final size:41
Alignment explanation
Indices: 63660795--63660947 Score: 173
Period size: 42 Copynumber: 3.7 Consensus size: 41
63660785 TAAGACTACG
* * *
63660795 TGTAAGACCATATCTGGGATATGGCATCGTATGAGATTTCG
1 TGTAAGACCATATCTGGGATATAGCATCATATGAGATTTCA
* *
63660836 TGTAAGACCATATCTGGGATATCGCGTCAATATGAGATTTCA
1 TGTAAGACCATATCTGGGATATAGCATC-ATATGAGATTTCA
* * *
63660878 TGTAAGACCATAACTAGGCCAT-TAGCATCGATATGAGATTACA
1 TGTAAGACCATATCT-GG-GATATAGCATC-ATATGAGATTTCA
* *
63660921 TGTAAGACCATATTTGGGATATGGCAT
1 TGTAAGACCATATCTGGGATATAGCAT
63660948 TGGTATGGTA
Statistics
Matches: 94, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
41 28 0.30
42 32 0.34
43 32 0.34
44 2 0.02
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (41 bp):
TGTAAGACCATATCTGGGATATAGCATCATATGAGATTTCA
Found at i:63660923 original size:43 final size:42
Alignment explanation
Indices: 63660795--63660932 Score: 154
Period size: 43 Copynumber: 3.3 Consensus size: 42
63660785 TAAGACTACG
* * * *
63660795 TGTAAGACCATATCTGGGATATGGCATCG-TATGAGATTTCG
1 TGTAAGACCATAACTGGCATATAGCATCGATATGAGATTTCA
* * * * *
63660836 TGTAAGACCATATCTGGGATATCGCGTCAATATGAGATTTCA
1 TGTAAGACCATAACTGGCATATAGCATCGATATGAGATTTCA
*
63660878 TGTAAGACCATAACTAGGCCAT-TAGCATCGATATGAGATTACA
1 TGTAAGACCATAACT-GG-CATATAGCATCGATATGAGATTTCA
63660921 TGTAAGACCATA
1 TGTAAGACCATA
63660933 TTTGGGATAT
Statistics
Matches: 84, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
41 26 0.31
42 25 0.30
43 31 0.37
44 2 0.02
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.29
Consensus pattern (42 bp):
TGTAAGACCATAACTGGCATATAGCATCGATATGAGATTTCA
Found at i:63663557 original size:29 final size:29
Alignment explanation
Indices: 63663511--63663621 Score: 152
Period size: 29 Copynumber: 3.9 Consensus size: 29
63663501 GCATGTATAT
*
63663511 GAATGTGATTTGGGCCTAATGGGCCATAG
1 GAATGTGATTTGGGCCTAATGGGCCATAA
*
63663540 GAAAGTGATTTGGGCCTAATGGGCCATAA
1 GAATGTGATTTGGGCCTAATGGGCCATAA
* * *
63663569 GAATGTGATTTAGGCCTAGTGGGCCATAT
1 GAATGTGATTTGGGCCTAATGGGCCATAA
* *
63663598 GAATGAGA-TTGGGCCTAGTGGGCC
1 GAATGTGATTTGGGCCTAATGGGCC
63663622 TAGTGGGCGA
Statistics
Matches: 74, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
28 15 0.20
29 59 0.80
ACGTcount: A:0.25, C:0.14, G:0.34, T:0.26
Consensus pattern (29 bp):
GAATGTGATTTGGGCCTAATGGGCCATAA
Found at i:63667569 original size:44 final size:41
Alignment explanation
Indices: 63667466--63667591 Score: 121
Period size: 44 Copynumber: 3.0 Consensus size: 41
63667456 GTAATCGAAC
* * *
63667466 ATCGATGCCACTATCCCAGAGAGGGTCTTACACGAAATCAG
1 ATCGATGCCACTATCCCAGACATGGTCTTACACGAAAACAG
* *
63667507 ATACGATGCCGA-TGTCCCAGACATGGTCTTACACATAAAACAG
1 AT-CGATGCC-ACTATCCCAGACATGGTCTTACAC-GAAAACAG
* *
63667550 AAGTCGATGCCAACT-TCCCAGACATTGTCTTACACGAGAACA
1 -A-TCGATGCC-ACTATCCCAGACATGGTCTTACACGAAAACA
63667592 CATTTCGGAA
Statistics
Matches: 70, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
41 2 0.03
42 26 0.37
43 12 0.17
44 28 0.40
45 2 0.03
ACGTcount: A:0.33, C:0.27, G:0.19, T:0.21
Consensus pattern (41 bp):
ATCGATGCCACTATCCCAGACATGGTCTTACACGAAAACAG
Found at i:63674810 original size:28 final size:28
Alignment explanation
Indices: 63674765--63674833 Score: 70
Period size: 28 Copynumber: 2.5 Consensus size: 28
63674755 ACTGCACTAT
* * *
63674765 ACTGATACTGA-ATTGGGCTTAGGCCCAC
1 ACTG-TACTGATATAGGGCTAAGGCCCAA
*
63674793 ACTGTTACT-ATATAGGGCTAAGGTCCAA
1 ACTG-TACTGATATAGGGCTAAGGCCCAA
63674821 ACTGTACTGATAT
1 ACTGTACTGATAT
63674834 TGAATAGGGC
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
27 5 0.15
28 29 0.85
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (28 bp):
ACTGTACTGATATAGGGCTAAGGCCCAA
Found at i:63682468 original size:19 final size:20
Alignment explanation
Indices: 63682444--63682481 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
63682434 GGTACCACCA
63682444 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
63682463 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
63682482 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:63682822 original size:93 final size:93
Alignment explanation
Indices: 63682712--63682881 Score: 277
Period size: 93 Copynumber: 1.8 Consensus size: 93
63682702 CCCCTAAGTG
* *
63682712 AACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGAATCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGAATCAACTCAAC
*
63682777 GAGTTCGGATGCCTAGTTACATCTCACA
66 GAATTCGGATGCCTAGTTACATCTCACA
* * * *
63682805 AACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGAATCAACTCAAC
63682870 GAATTCGGATGC
66 GAATTCGGATGC
63682882 TCAACCATCC
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGAATCAACTCAAC
GAATTCGGATGCCTAGTTACATCTCACA
Found at i:63682878 original size:46 final size:46
Alignment explanation
Indices: 63682706--63682878 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
63682696 AACCCGCCCC
* * * *
63682706 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * * *
63682752 TAAATGAACTCGGAATCAACTCAACGAGTTCGGATGCCTAGTTACATCTCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATC-CA
*
63682803 -CA---AACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
*
63682845 TAAGTGAACTCGGACTCAACTCAACGAATTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
63682879 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 8 0.08
44 1 0.01
46 57 0.55
47 27 0.26
49 1 0.01
50 6 0.06
51 2 0.02
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:63684276 original size:54 final size:54
Alignment explanation
Indices: 63684213--63684320 Score: 207
Period size: 54 Copynumber: 2.0 Consensus size: 54
63684203 ATTAGAAAAT
*
63684213 CAAGCATGATAAGTTGATTTTTAAGAATTTAAAATCTTAGGTTGTTTCCCCAAA
1 CAAGCATGATAAGTTGATTTTTAAGAATTTAAAATCTTAAGTTGTTTCCCCAAA
63684267 CAAGCATGATAAGTTGATTTTTAAGAATTTAAAATCTTAAGTTGTTTCCCCAAA
1 CAAGCATGATAAGTTGATTTTTAAGAATTTAAAATCTTAAGTTGTTTCCCCAAA
63684321 GTTTAGGTAT
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.36, C:0.13, G:0.14, T:0.37
Consensus pattern (54 bp):
CAAGCATGATAAGTTGATTTTTAAGAATTTAAAATCTTAAGTTGTTTCCCCAAA
Found at i:63687047 original size:27 final size:27
Alignment explanation
Indices: 63687017--63687070 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
63687007 TCATACAACC
* *
63687017 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
63687044 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
63687071 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:63688086 original size:11 final size:12
Alignment explanation
Indices: 63688058--63688090 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
63688048 GCCCAAACGT
63688058 CGAAATTTTCGAA
1 CGAAATTTTC-AA
63688071 CGAAATTTTC-A
1 CGAAATTTTCAA
63688082 CGAAATTTT
1 CGAAATTTT
63688091 TCCATGAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 10 0.50
13 10 0.50
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.36
Consensus pattern (12 bp):
CGAAATTTTCAA
Found at i:63689526 original size:15 final size:15
Alignment explanation
Indices: 63689506--63689549 Score: 70
Period size: 15 Copynumber: 2.9 Consensus size: 15
63689496 GAGGCCTAGA
63689506 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
63689521 ATAAAGAAATCCATG
1 ATAAAGAAATCCAAG
*
63689536 ATAAGGAAATCCAA
1 ATAAAGAAATCCAA
63689550 ATTACAATAC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.57, C:0.14, G:0.14, T:0.16
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:63689945 original size:43 final size:43
Alignment explanation
Indices: 63689884--63690051 Score: 178
Period size: 43 Copynumber: 3.9 Consensus size: 43
63689874 TTTTTACGAA
* *
63689884 AAACGTCGCTAAAGAACATGACCTTTAGCTGCACTTTTCCC-AG
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCAC-TTTCCCTAG
* *
63689927 AAACGCTGCTAAAGAACATGACCTTTAGCGGCGCTTTCCCTAG
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCACTTTCCCTAG
** * * *
63689970 AAACGCCGCTAAAGAACATGACCTTTAGCAACGCTTTCCCCAA
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCACTTTCCCTAG
* * * * * *
63690013 AAATGCCACTATAG-ACATGATCTTTAGCGACTCTTTCCC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCACTTTCCC
63690052 CAAGAATGCC
Statistics
Matches: 109, Mismatches: 15, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
42 28 0.26
43 81 0.74
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.24
Consensus pattern (43 bp):
AAACGCCGCTAAAGAACATGACCTTTAGCGGCACTTTCCCTAG
Found at i:63690049 original size:42 final size:42
Alignment explanation
Indices: 63689892--63690070 Score: 171
Period size: 43 Copynumber: 4.2 Consensus size: 42
63689882 AAAAACGTCG
* * * * **
63689892 CTAAAGAACATGACCTTTAGCTG-CACTTTTCCCAGAAACGCTG
1 CTAAAG-ACATGACCTTTAGC-GACGCTTTCCCCAAAAATGCCA
* * * * *
63689935 CTAAAGAACATGACCTTTAGCGGCGCTTTCCCTAGAAACGCCG
1 CTAAAG-ACATGACCTTTAGCGACGCTTTCCCCAAAAATGCCA
*
63689978 CTAAAGAACATGACCTTTAGCAACGCTTTCCCCAAAAATGCCA
1 CTAAAG-ACATGACCTTTAGCGACGCTTTCCCCAAAAATGCCA
* * * *
63690021 CTATAGACATGATCTTTAGCGACTCTTTCCCCAAGAATGCCA
1 CTAAAGACATGACCTTTAGCGACGCTTTCCCCAAAAATGCCA
63690063 CTAAAGAC
1 CTAAAGAC
63690071 CATATCAAAT
Statistics
Matches: 119, Mismatches: 16, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
42 40 0.34
43 79 0.66
ACGTcount: A:0.32, C:0.29, G:0.16, T:0.23
Consensus pattern (42 bp):
CTAAAGACATGACCTTTAGCGACGCTTTCCCCAAAAATGCCA
Found at i:63698215 original size:40 final size:40
Alignment explanation
Indices: 63698121--63698265 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
63698111 TACTCGAATG
*
63698121 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
63698162 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
63698202 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
63698242 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
63698266 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:63702292 original size:38 final size:38
Alignment explanation
Indices: 63702232--63702334 Score: 116
Period size: 38 Copynumber: 2.7 Consensus size: 38
63702222 AATGACTTGT
** * *
63702232 AGGCTTCGTGCTGGTAAAATATCCGGGTTAAATCCTGC
1 AGGCTTCGTGCTGGTATTATATCCGGGATAAATCCCGC
**
63702270 AGGCTTCGTGCTGGTATTATATCTAGGATAAATCCCGC
1 AGGCTTCGTGCTGGTATTATATCCGGGATAAATCCCGC
* * * *
63702308 AGGCCTAGTACTGGTATTATATTCGGG
1 AGGCTTCGTGCTGGTATTATATCCGGG
63702335 CCTTCGTGCC
Statistics
Matches: 53, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
38 53 1.00
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.31
Consensus pattern (38 bp):
AGGCTTCGTGCTGGTATTATATCCGGGATAAATCCCGC
Found at i:63702375 original size:43 final size:43
Alignment explanation
Indices: 63702327--63702436 Score: 202
Period size: 43 Copynumber: 2.6 Consensus size: 43
63702317 ACTGGTATTA
*
63702327 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCATGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
63702370 TATTCGGGCCTTCATGCCTAGCAGGCTTCGTGCTGGTGATGTG
1 TATTCGGGCCTTCATGCCTAGCAGGCTTCGTGCCGGTGATGTG
63702413 TATTCGGGCCTTCATGCCTAGCAG
1 TATTCGGGCCTTCATGCCTAGCAG
63702437 ACATAATGCC
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 65 1.00
ACGTcount: A:0.12, C:0.25, G:0.32, T:0.31
Consensus pattern (43 bp):
TATTCGGGCCTTCATGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:63704064 original size:48 final size:48
Alignment explanation
Indices: 63703970--63704073 Score: 122
Period size: 48 Copynumber: 2.2 Consensus size: 48
63703960 TGTGCTAAGC
* * *
63703970 GTAAGACCTATCTGGGATAGGCATCGACACAGCCCAGTGAGTGCTAGT
1 GTAAGACCTATCTGGGATAGGCATCAACACAGCCCAGAGAGAGCTAGT
**
63704018 GTAAGACCTATC-GGGAATAGGCATCAACAC-GGGCAGAGCAGAGCTAGT
1 GTAAGACCTATCTGGG-ATAGGCATCAACACAGCCCAGAG-AGAGCTAGT
*
63704066 ATAAGACC
1 GTAAGACC
63704074 ATAGTAGGAC
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
47 8 0.17
48 40 0.83
ACGTcount: A:0.32, C:0.22, G:0.29, T:0.17
Consensus pattern (48 bp):
GTAAGACCTATCTGGGATAGGCATCAACACAGCCCAGAGAGAGCTAGT
Found at i:63706592 original size:39 final size:39
Alignment explanation
Indices: 63706525--63706626 Score: 143
Period size: 39 Copynumber: 2.6 Consensus size: 39
63706515 ATTTGATGTG
* *
63706525 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAAAA
1 TATCCGGGGTTAAA-TCCCGCAGGCTTCGTGCTGGTAAAA
**
63706565 TATCCGGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAAA
*
63706604 TATCC-GGGATAAATCCCGCAGGC
1 TATCCGGGGTTAAATCCCGCAGGC
63706627 CTAGTACTGG
Statistics
Matches: 57, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
38 17 0.30
39 27 0.47
40 13 0.23
ACGTcount: A:0.23, C:0.25, G:0.27, T:0.25
Consensus pattern (39 bp):
TATCCGGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAAA
Found at i:63706626 original size:38 final size:38
Alignment explanation
Indices: 63706541--63706649 Score: 146
Period size: 38 Copynumber: 2.8 Consensus size: 38
63706531 GGCTTAAAGA
** *
63706541 CCCGCAGGCTTCGTGCTGGTAAAATATCCGGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCC-GGGATAAAT
63706580 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGATAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGATAAAT
* * * *
63706618 CCCGCAGGCCTAGTACTGGTATTATATTCGGG
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGGG
63706650 CCTTCGTGCC
Statistics
Matches: 63, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
38 36 0.57
39 27 0.43
ACGTcount: A:0.21, C:0.24, G:0.28, T:0.28
Consensus pattern (38 bp):
CCCGCAGGCTTCGTGCTGGTATTATATCCGGGATAAAT
Found at i:63706895 original size:43 final size:43
Alignment explanation
Indices: 63706642--63706882 Score: 455
Period size: 43 Copynumber: 5.6 Consensus size: 43
63706632 ACTGGTATTA
*
63706642 TATTCGGGCCTTCGTGCCTAGTAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
63706685 TATTCGGGCCTTCGTGCATAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
63706728 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
63706771 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
63706814 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCTGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
63706857 TATTCGGGCCTTCGTGCCTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
63706883 GTAATGCCGG
Statistics
Matches: 194, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 194 1.00
ACGTcount: A:0.10, C:0.25, G:0.34, T:0.31
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:63719792 original size:28 final size:28
Alignment explanation
Indices: 63719752--63719808 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
63719742 CAAGTCTGCA
63719752 TAAGATTTCTGACTATCGGAAGCTACTT
1 TAAGATTTCTGACTATCGGAAGCTACTT
63719780 TAAGATTTCTGACTATCGGAAGCTACTT
1 TAAGATTTCTGACTATCGGAAGCTACTT
63719808 T
1 T
63719809 CAAACTATCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.37
Consensus pattern (28 bp):
TAAGATTTCTGACTATCGGAAGCTACTT
Found at i:63722785 original size:40 final size:40
Alignment explanation
Indices: 63722730--63722902 Score: 206
Period size: 40 Copynumber: 4.3 Consensus size: 40
63722720 CGGATGATAT
** **
63722730 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTCCTATGC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAA
* *
63722770 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAA
** *
63722810 CCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAA
* * *
63722850 CCGGGCTAAGACCCGAAGGCATTTGTACGAGTTG-CTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGACTATAA
*
63722890 CC-GGCTAAATCCC
1 CCGGGCTAAGTCCC
63722903 AAAGATACTT
Statistics
Matches: 116, Mismatches: 16, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
39 9 0.08
40 105 0.91
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAA
Found at i:63722859 original size:80 final size:80
Alignment explanation
Indices: 63722726--63722902 Score: 232
Period size: 80 Copynumber: 2.2 Consensus size: 80
63722716 TATTCGGATG
** ** ** *
63722726 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTCCTATGCCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCGAGTGACTATAACCGGGCTAAGACCCGAAGGCA
* *
63722791 TTTGTGCTAG-TGACT
66 TTTGTACGAGTTG-CT
*
63722806 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACTATAACCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCGAGTGACTATAACCGGGCTAAGACCCGAAGGCA
63722871 TTTGTACGAGTTGCT
66 TTTGTACGAGTTGCT
*
63722886 ATATCC-GGCTAAATCCC
1 ATATCCGGGCTAAGTCCC
63722903 AAAGATACTT
Statistics
Matches: 85, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
79 10 0.12
80 73 0.86
81 2 0.02
ACGTcount: A:0.24, C:0.25, G:0.26, T:0.25
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTCATGCGAGTGACTATAACCGGGCTAAGACCCGAAGGCA
TTTGTACGAGTTGCT
Found at i:63731365 original size:53 final size:53
Alignment explanation
Indices: 63731261--63731365 Score: 129
Period size: 53 Copynumber: 2.0 Consensus size: 53
63731251 TTCCTGTTTA
* * * * *
63731261 AACTTACCATTGCCATGTCTTGACATGGTCTTACGTAGTATCCTTGCCTTATC
1 AACTCACCATTGCCATGCCTTGACATGGTCTTACATAGGATCCTTGACTTATC
* * * *
63731314 AACTCACCATTGTCATGCCTTGGCATGGTCTTACATGGGATCTTTGACTTAT
1 AACTCACCATTGCCATGCCTTGACATGGTCTTACATAGGATCCTTGACTTAT
63731366 AGTAGTTTAT
Statistics
Matches: 43, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
53 43 1.00
ACGTcount: A:0.21, C:0.25, G:0.17, T:0.37
Consensus pattern (53 bp):
AACTCACCATTGCCATGCCTTGACATGGTCTTACATAGGATCCTTGACTTATC
Found at i:63748504 original size:50 final size:46
Alignment explanation
Indices: 63748450--63748554 Score: 129
Period size: 46 Copynumber: 2.2 Consensus size: 46
63748440 TACATGAATT
* *
63748450 ATTCCTGTCTCCAATGCCATATATATATATAATATGGGCTGACATGGCTC
1 ATTCCTGTCTCCAAAGCC--ATATA-AT-TAATATGGACTGACATGGCTC
* *
63748500 ATTCCTGTCTCCAAAGCCATATAATTGATATGGACTTACATGGCTC
1 ATTCCTGTCTCCAAAGCCATATAATTAATATGGACTGACATGGCTC
*
63748546 ATTTCTGTC
1 ATTCCTGTC
63748555 CTGCCCTGTC
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
46 26 0.52
47 2 0.04
48 5 0.10
50 17 0.34
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.35
Consensus pattern (46 bp):
ATTCCTGTCTCCAAAGCCATATAATTAATATGGACTGACATGGCTC
Found at i:63748541 original size:46 final size:49
Alignment explanation
Indices: 63748433--63748554 Score: 142
Period size: 50 Copynumber: 2.5 Consensus size: 49
63748423 TGTCTTCGAC
** * *
63748433 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATATAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCA-ATATATATATAAT
* * *
63748483 ATGGGCTGACATGGCTCATTCCTGTCTCCAAAGCC-ATATA-AT-TGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATATAAT
*
63748529 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
63748555 CTGCCCTGTC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
46 26 0.42
47 2 0.03
48 5 0.08
50 29 0.47
ACGTcount: A:0.28, C:0.21, G:0.16, T:0.35
Consensus pattern (49 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATATAAT
Found at i:63750836 original size:24 final size:24
Alignment explanation
Indices: 63750804--63750850 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
63750794 TTCTAGGGTG
63750804 TTAATTAGAAAGAGATTTCAATTC
1 TTAATTAGAAAGAGATTTCAATTC
63750828 TTAATTAGAAAGAGATTTCAATT
1 TTAATTAGAAAGAGATTTCAATT
63750851 ATTCAACCTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.43, C:0.06, G:0.13, T:0.38
Consensus pattern (24 bp):
TTAATTAGAAAGAGATTTCAATTC
Found at i:63753900 original size:26 final size:26
Alignment explanation
Indices: 63753871--63753924 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
63753861 TGGGCTTGAG
*
63753871 CTGACTTGGGCTTTGGATGGATTTTC
1 CTGACTTAGGCTTTGGATGGATTTTC
63753897 CTGACTTAGGCTTTGGATGGATTTTC
1 CTGACTTAGGCTTTGGATGGATTTTC
63753923 CT
1 CT
63753925 TACACACTGA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.13, C:0.17, G:0.28, T:0.43
Consensus pattern (26 bp):
CTGACTTAGGCTTTGGATGGATTTTC
Found at i:63758188 original size:55 final size:54
Alignment explanation
Indices: 63758049--63758255 Score: 227
Period size: 53 Copynumber: 3.8 Consensus size: 54
63758039 TTCCTTTTTA
* * * * *
63758049 AACTTACCATTTCCATGTCTTCACATGGTCTTACGTGGTATCCTTGCCTTATA-
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * *
63758102 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
** * * * * *
63758156 TAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAG
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* *
63758211 AACTTACCAATGCCATGCCTTGGCATGGTCTTACAAGGTATCCTT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
63758256 AAACCCTAAT
Statistics
Matches: 124, Mismatches: 28, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
53 45 0.36
54 37 0.30
55 42 0.34
ACGTcount: A:0.21, C:0.25, G:0.17, T:0.37
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:63764507 original size:40 final size:40
Alignment explanation
Indices: 63764403--63764649 Score: 315
Period size: 40 Copynumber: 6.2 Consensus size: 40
63764393 CGGATGATAA
* * *
63764403 CCGGGCTAAGTCCTGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* * *
63764443 CTGGGCTAAG-CTCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
63764482 CTGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-AT
*
63764523 -CGGGCTAAGTCCCGAAGGCATTTGTGCCAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
63764562 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
63764602 CCGGGCTAAGTCCCAAAGGCATTTGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
63764642 CC-GGCTAA
1 CCGGGCTAA
63764650 ATTCTGAAGG
Statistics
Matches: 184, Mismatches: 18, Indels: 11
0.86 0.08 0.05
Matches are distributed among these distances:
39 42 0.23
40 140 0.76
41 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:63764616 original size:120 final size:119
Alignment explanation
Indices: 63764399--63764626 Score: 350
Period size: 120 Copynumber: 1.9 Consensus size: 119
63764389 TATTCGGATG
* * * *
63764399 ATAACCGGGCTAAGTCCTGAAGGCATTTGTGCTAGTGACTAATTCTGGGCTAAGCTCGAAGGCAT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCCAGTGACTAATTCCGGGCTAAGCCCGAAGGCAT
* * *
63764464 TTGTGTGAGTTACTATATCTGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACT
66 TTGTGCGAGTTACTATAACCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACT
* *
63764518 ATAATCGGGCTAAGTCCCGAAGGCATTTGTGCCAGTTACT-ATATCCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCCAGTGACTAAT-TCCGGGCTAAG-CCCGAAGGC
63764582 ATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCAAAGGCATTTG
64 ATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCAAAGGCATTTG
63764627 AGCAAGTAGC
Statistics
Matches: 98, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
118 2 0.02
119 46 0.47
120 50 0.51
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (119 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCCAGTGACTAATTCCGGGCTAAGCCCGAAGGCAT
TTGTGCGAGTTACTATAACCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACT
Found at i:63773451 original size:21 final size:20
Alignment explanation
Indices: 63773427--63773465 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
63773417 GAAACTGACT
*
63773427 CATTAGAATTGAAATTGAAAC
1 CATTA-AATTGAAAATGAAAC
*
63773448 CATTATATTGAAAATGAA
1 CATTAAATTGAAAATGAA
63773466 TCTACAATCT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.49, C:0.08, G:0.13, T:0.31
Consensus pattern (20 bp):
CATTAAATTGAAAATGAAAC
Found at i:63776383 original size:22 final size:23
Alignment explanation
Indices: 63776355--63776397 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
63776345 TATCCCCACA
*
63776355 TGGAGTGTAG-GGCTGGATGGAG
1 TGGAGTGTAGAGGATGGATGGAG
63776377 TGGAGTGTAGAGGATGGATGG
1 TGGAGTGTAGAGGATGGATGG
63776398 GTAAGATCTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.21, C:0.02, G:0.53, T:0.23
Consensus pattern (23 bp):
TGGAGTGTAGAGGATGGATGGAG
Found at i:63780291 original size:91 final size:91
Alignment explanation
Indices: 63780136--63780317 Score: 328
Period size: 91 Copynumber: 2.0 Consensus size: 91
63780126 AGCATATGCG
* *
63780136 TCTCGTTAGCTTAAGACTCATGAAGTGAACTACTGGGCGCATGACTTGGAGTCGACAGCGGTGAT
1 TCTCGTTAGCTTAAGACGCATAAAGTGAACTACTGGGCGCATGACTTGGAGTCGACAGCGGTGAT
63780201 ATTCGCACTGAAGATTTGAAGGCATT
66 ATTCGCACTGAAGATTTGAAGGCATT
*
63780227 TCTCGTTAGCTTAAGACGCATAAAGTGAACTACTGGGCGCATGACTTGGAGTCGGCAGCGGTGAT
1 TCTCGTTAGCTTAAGACGCATAAAGTGAACTACTGGGCGCATGACTTGGAGTCGACAGCGGTGAT
*
63780292 ATTCGCACTGAAGATTTGGAGGCATT
66 ATTCGCACTGAAGATTTGAAGGCATT
63780318 ACCTGTATGG
Statistics
Matches: 87, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
91 87 1.00
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.27
Consensus pattern (91 bp):
TCTCGTTAGCTTAAGACGCATAAAGTGAACTACTGGGCGCATGACTTGGAGTCGACAGCGGTGAT
ATTCGCACTGAAGATTTGAAGGCATT
Found at i:63782807 original size:23 final size:23
Alignment explanation
Indices: 63782777--63782822 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
63782767 TGTTAGGGTT
* *
63782777 CACGGCTATTTTTTCCCTATTTC
1 CACGGCTAGTTTTGCCCTATTTC
*
63782800 CACGGCTAGTTTTGCCCTCTTTC
1 CACGGCTAGTTTTGCCCTATTTC
63782823 TCTCTTTGTC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.11, C:0.33, G:0.13, T:0.43
Consensus pattern (23 bp):
CACGGCTAGTTTTGCCCTATTTC
Found at i:63787085 original size:18 final size:19
Alignment explanation
Indices: 63787041--63787082 Score: 70
Period size: 17 Copynumber: 2.3 Consensus size: 19
63787031 TGGGCCACGT
63787041 TGGGCCTAGATGGGCTGTG
1 TGGGCCTAGATGGGCTGTG
63787060 TGGGCCTA-ATGGGCT-TG
1 TGGGCCTAGATGGGCTGTG
63787077 TGGGCC
1 TGGGCC
63787083 CTATAGGATT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 8 0.35
18 7 0.30
19 8 0.35
ACGTcount: A:0.10, C:0.19, G:0.45, T:0.26
Consensus pattern (19 bp):
TGGGCCTAGATGGGCTGTG
Found at i:63787683 original size:22 final size:22
Alignment explanation
Indices: 63787612--63787676 Score: 76
Period size: 22 Copynumber: 3.0 Consensus size: 22
63787602 AGCCTTTAGC
* * *
63787612 CGTCCTGTCTATGGCTTTGAGT
1 CGTCCTATCTACGGCATTGAGT
**
63787634 CGTCCTATCTACGGTGTTGAGT
1 CGTCCTATCTACGGCATTGAGT
*
63787656 CGTCCTATGTACGGCATTGAG
1 CGTCCTATCTACGGCATTGAG
63787677 CTGTCCTGTT
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 36 1.00
ACGTcount: A:0.14, C:0.23, G:0.28, T:0.35
Consensus pattern (22 bp):
CGTCCTATCTACGGCATTGAGT
Found at i:63788048 original size:114 final size:114
Alignment explanation
Indices: 63787833--63788076 Score: 373
Period size: 114 Copynumber: 2.1 Consensus size: 114
63787823 ATACTGATTC
* * *
63787833 TGTACTAGGCTTAGGCCCACCTAATTCTATTAATGGACTAGGCCCAACTGTTACTGATATTGAGA
1 TGTACTGGGCTTAGGCACACCTAATTCTATTAATGGACTAGGCCCAACTATTACTGATATTGAGA
* *
63787898 ATGGGCTAGGCTCAATTGATTCTGATGAGGGCTGAGACCCAAGTGAAAT
66 ATGGGCTAGGCCCAATTGATTCTGATAAGGGCTGAGACCCAAGTGAAAT
* * *
63787947 TGTACTGGGCTTAGGCACACCTGATTCTGTTAATAGG-CTAGGCCCAGCTATTACTGATATTGAG
1 TGTACTGGGCTTAGGCACACCTAATTCTATTAAT-GGACTAGGCCCAACTATTACTGATATTGAG
* *
63788011 AATGGGCTAGGCCCAATTGATTTTGATAAGGGTTGAGACCCAAGTGAAAT
65 AATGGGCTAGGCCCAATTGATTCTGATAAGGGCTGAGACCCAAGTGAAAT
*
63788061 TGTACAGGGCTTAGGC
1 TGTACTGGGCTTAGGC
63788077 CCACACACAT
Statistics
Matches: 118, Mismatches: 11, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
114 116 0.98
115 2 0.02
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.28
Consensus pattern (114 bp):
TGTACTGGGCTTAGGCACACCTAATTCTATTAATGGACTAGGCCCAACTATTACTGATATTGAGA
ATGGGCTAGGCCCAATTGATTCTGATAAGGGCTGAGACCCAAGTGAAAT
Found at i:63790025 original size:68 final size:67
Alignment explanation
Indices: 63789953--63790102 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
63789943 CATCATGTGT
* * * *
63789953 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
63790015 ATGTAG
62 ATGTAG
** * *
63790021 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
63790086 AG
66 AG
63790088 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
63790103 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:63790058 original size:64 final size:64
Alignment explanation
Indices: 63789977--63790160 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
63789967 AGACATTATG
* *
63789977 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
63790041 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
63790106 AA
63 AA
* * * *
63790108 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
63790161 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:63801276 original size:40 final size:40
Alignment explanation
Indices: 63801179--63801276 Score: 133
Period size: 40 Copynumber: 2.5 Consensus size: 40
63801169 TCTAGCACGA
* * *
63801179 AGCCTACGGGTCTTTAAACCCGGATAACATTCCAGCATAT
1 AGCCTACAGGTCTTTAAGCCCAGATAACATTCCAGCATAT
* * * *
63801219 AGCTTGCTGGTCTTTAAGCCTAGATAACATTCCAGCATAT
1 AGCCTACAGGTCTTTAAGCCCAGATAACATTCCAGCATAT
63801259 AGCCTACAGGTCTTTAAG
1 AGCCTACAGGTCTTTAAG
63801277 TTCGGATACA
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 49 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (40 bp):
AGCCTACAGGTCTTTAAGCCCAGATAACATTCCAGCATAT
Found at i:63811102 original size:28 final size:28
Alignment explanation
Indices: 63811071--63811128 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
63811061 ATATTTTGGA
*
63811071 GATTGAATTATTCAACATATGGGGCATT
1 GATTGAATTACTCAACATATGGGGCATT
63811099 GATTGAATTACTCAACATATGGGGCATT
1 GATTGAATTACTCAACATATGGGGCATT
63811127 GA
1 GA
63811129 CTTTTTAGGC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.33
Consensus pattern (28 bp):
GATTGAATTACTCAACATATGGGGCATT
Found at i:63814805 original size:164 final size:164
Alignment explanation
Indices: 63814532--63814859 Score: 557
Period size: 164 Copynumber: 2.0 Consensus size: 164
63814522 AAACTTAGTT
*
63814532 TCTTTTGAGATGAAGCATGCATGAAGGTTTATATCTTTAAAATTGACTTAGTAACTTTCTAGAGG
1 TCTTTTGAGATGAAACATGCATGAAGGTTTATATCTTTAAAATTGACTTAGTAACTTTCTAGAGG
* * *
63814597 CGAAATCCTAGGAGACATAAAAATCTAAAATGATATAGGCACTATTTCTTTGGATTGTTTGAGCC
66 CAAAATCCTAGGAGACATAAAAATCTAAAATGATATAAGCACTATTTCTTTGGATCGTTTGAGCC
63814662 TTTTCAAGCCCACCTTATGATATTAGACCCTTGA
131 TTTTCAAGCCCACCTTATGATATTAGACCCTTGA
* * *
63814696 TCTTTTGAGATTAAACATGCATGAAGGTTTATATCTTTAGAATTGACTTAGTAACTTTCTTGAGG
1 TCTTTTGAGATGAAACATGCATGAAGGTTTATATCTTTAAAATTGACTTAGTAACTTTCTAGAGG
* *
63814761 CAAAATCTTAGGAGACATAAATATCTAAAATGATATAAGCACTATTTCTTTGGATCGTTTGAGCC
66 CAAAATCCTAGGAGACATAAAAATCTAAAATGATATAAGCACTATTTCTTTGGATCGTTTGAGCC
* *
63814826 TTTTCAAGCCCACTTTATGATATTCGACCCTTGA
131 TTTTCAAGCCCACCTTATGATATTAGACCCTTGA
63814860 AACTATAATT
Statistics
Matches: 153, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
164 153 1.00
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.36
Consensus pattern (164 bp):
TCTTTTGAGATGAAACATGCATGAAGGTTTATATCTTTAAAATTGACTTAGTAACTTTCTAGAGG
CAAAATCCTAGGAGACATAAAAATCTAAAATGATATAAGCACTATTTCTTTGGATCGTTTGAGCC
TTTTCAAGCCCACCTTATGATATTAGACCCTTGA
Found at i:63831915 original size:29 final size:28
Alignment explanation
Indices: 63831855--63831969 Score: 108
Period size: 29 Copynumber: 4.0 Consensus size: 28
63831845 GTGAGCATGA
* * *
63831855 ATATGAATGTGACTGGGCCTAA-CGGTCT
1 ATATAAATGTGATTGGGCCTAATCGG-CC
63831883 ATATAAATGTGATTTGGGCCTAATCGGCC
1 ATATAAATGTGA-TTGGGCCTAATCGGCC
*
63831912 ATATACAA-GTGATTTGGGCCTAATGGGCC
1 ATATA-AATGTGA-TTGGGCCTAATCGGCC
* * * *
63831941 ATATGAATATGATTGGGCTTAATGGGCC
1 ATATAAATGTGATTGGGCCTAATCGGCC
63831969 A
1 A
63831970 GATACAGGCA
Statistics
Matches: 76, Mismatches: 7, Indels: 8
0.84 0.08 0.09
Matches are distributed among these distances:
28 29 0.38
29 42 0.55
30 5 0.07
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.30
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATCGGCC
Found at i:63836536 original size:58 final size:56
Alignment explanation
Indices: 63836446--63836568 Score: 183
Period size: 58 Copynumber: 2.2 Consensus size: 56
63836436 ACCAATCTCG
* * *
63836446 TTCATATGGCCCATTAGGCCCAATCACCTTCATATGGCCCATCAGGCCAAATCACA
1 TTCATATGGCCCATCAGGCCCAATCACATTCATATGGCCCATCAGACCAAATCACA
* *
63836502 TTCATATGGCCCCTATCAGGCCCAATCAGATTCATATGGCCCATCAGACCCAATCACA
1 TTCATATGG-CCC-ATCAGGCCCAATCACATTCATATGGCCCATCAGACCAAATCACA
63836560 TTCATATGG
1 TTCATATGG
63836569 ATCATCAAGC
Statistics
Matches: 60, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
56 9 0.15
57 3 0.05
58 48 0.80
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (56 bp):
TTCATATGGCCCATCAGGCCCAATCACATTCATATGGCCCATCAGACCAAATCACA
Found at i:63836575 original size:28 final size:28
Alignment explanation
Indices: 63836437--63836568 Score: 183
Period size: 28 Copynumber: 4.6 Consensus size: 28
63836427 CCCTTTAAGA
* * *
63836437 CCAATCTCGTTCATATGGCCCATTAGGC
1 CCAATCACATTCATATGGCCCATCAGGC
*
63836465 CCAATCACCTTCATATGGCCCATCAGGC
1 CCAATCACATTCATATGGCCCATCAGGC
*
63836493 CAAATCACATTCATATGGCCCCTATCAGGC
1 CCAATCACATTCATATGG-CCC-ATCAGGC
* *
63836523 CCAATCAGATTCATATGGCCCATCAGAC
1 CCAATCACATTCATATGGCCCATCAGGC
63836551 CCAATCACATTCATATGG
1 CCAATCACATTCATATGG
63836569 ATCATCAAGC
Statistics
Matches: 93, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
28 64 0.69
29 6 0.06
30 23 0.25
ACGTcount: A:0.28, C:0.33, G:0.14, T:0.24
Consensus pattern (28 bp):
CCAATCACATTCATATGGCCCATCAGGC
Found at i:63837775 original size:6 final size:6
Alignment explanation
Indices: 63837757--63837901 Score: 102
Period size: 6 Copynumber: 23.3 Consensus size: 6
63837747 AAGAAACATT
*
63837757 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCA-A GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * *
63837806 ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA ATCAGT ATCAGGTA A-CAGA
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
* * *
63837856 ATCAAA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAAA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATC-AGA ATCAGA AT
63837902 GTGAATGCAA
Statistics
Matches: 110, Mismatches: 14, Indels: 30
0.71 0.09 0.19
Matches are distributed among these distances:
5 9 0.08
6 79 0.72
7 17 0.15
8 5 0.05
ACGTcount: A:0.49, C:0.16, G:0.17, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:63837802 original size:31 final size:31
Alignment explanation
Indices: 63837799--63837901 Score: 197
Period size: 31 Copynumber: 3.3 Consensus size: 31
63837789 CAAGTGACAG
63837799 AATCAGAATCAGTATCAGGTAACAGAATCAA
1 AATCAGAATCAGTATCAGGTAACAGAATCAA
63837830 AATCAGAATCAGTATCAGGTAACAGAATCAA
1 AATCAGAATCAGTATCAGGTAACAGAATCAA
63837861 AATCAGAATCAGTATCAGGTAACAGAATCAAA
1 AATCAGAATCAGTATCAGGTAACAGAATC-AA
63837893 AATCAGAAT
1 AATCAGAAT
63837902 GTGAATGCAA
Statistics
Matches: 71, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
31 60 0.85
32 11 0.15
ACGTcount: A:0.50, C:0.16, G:0.16, T:0.19
Consensus pattern (31 bp):
AATCAGAATCAGTATCAGGTAACAGAATCAA
Found at i:63837866 original size:25 final size:25
Alignment explanation
Indices: 63837771--63837872 Score: 105
Period size: 25 Copynumber: 3.8 Consensus size: 25
63837761 GAACTAGAAT
* * *
63837771 CAGAATCAGAATCAGAATCAAGTGA
1 CAGAATCAAAATCAGAATCAGGTAA
* *
63837796 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAAAATCAGAATCAGGTAA
63837821 CAGAATCAAAATCAGAATCAGTATCAGGTAA
1 CAGAATCAAAATCAG----A--ATCAGGTAA
63837852 CAGAATCAAAATCAGAATCAG
1 CAGAATCAAAATCAGAATCAG
63837873 TATCAGGTAA
Statistics
Matches: 66, Mismatches: 5, Indels: 12
0.80 0.06 0.14
Matches are distributed among these distances:
25 41 0.62
27 1 0.02
31 24 0.36
ACGTcount: A:0.48, C:0.17, G:0.18, T:0.18
Consensus pattern (25 bp):
CAGAATCAAAATCAGAATCAGGTAA
Found at i:63837889 original size:25 final size:25
Alignment explanation
Indices: 63837771--63837890 Score: 105
Period size: 31 Copynumber: 4.3 Consensus size: 25
63837761 GAACTAGAAT
* * *
63837771 CAGAATCAGAATCAGAATCAAGTGA
1 CAGAATCAGAATCAGTATCAGGTAA
63837796 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGTATCAGGTAA
63837821 CAGAATCAAAATCAGAATCAGTATCAGGTAA
1 CAG------AATCAGAATCAGTATCAGGTAA
63837852 CAGAATCAAAATCAGAATCAGTATCAGGTAA
1 CAG------AATCAGAATCAGTATCAGGTAA
63837883 CAGAATCA
1 CAGAATCA
63837891 AAAATCAGAA
Statistics
Matches: 86, Mismatches: 3, Indels: 12
0.85 0.03 0.12
Matches are distributed among these distances:
25 30 0.35
31 56 0.65
ACGTcount: A:0.47, C:0.17, G:0.17, T:0.18
Consensus pattern (25 bp):
CAGAATCAGAATCAGTATCAGGTAA
Found at i:63838081 original size:27 final size:26
Alignment explanation
Indices: 63838043--63838111 Score: 84
Period size: 26 Copynumber: 2.6 Consensus size: 26
63838033 ATTATTAGAA
* *
63838043 ATTGTGACAGAGTCACCAGATACAGAT
1 ATTGTGGCAGAGCCACCAGA-ACAGAT
*
63838070 ATTGTGGCAGAGCCACCAGAATAGAT
1 ATTGTGGCAGAGCCACCAGAACAGAT
* *
63838096 AATGTGGCAAAGCCAC
1 ATTGTGGCAGAGCCAC
63838112 TTAACAGAAT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
26 19 0.51
27 18 0.49
ACGTcount: A:0.36, C:0.20, G:0.25, T:0.19
Consensus pattern (26 bp):
ATTGTGGCAGAGCCACCAGAACAGAT
Found at i:63838306 original size:22 final size:21
Alignment explanation
Indices: 63838270--63838334 Score: 58
Period size: 22 Copynumber: 3.0 Consensus size: 21
63838260 GCAAATACGT
* *
63838270 TTGGCACACATCCATCATCAGG
1 TTGGCACAAAGCCAT-ATCAGG
* *
63838292 TTGGCACAGAGCCATATGTAGG
1 TTGGCACAAAGCCATAT-CAGG
*
63838314 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCAT-ATCAG
63838335 AAGGCTTTAA
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 2 0.06
22 31 0.89
23 2 0.06
ACGTcount: A:0.32, C:0.25, G:0.22, T:0.22
Consensus pattern (21 bp):
TTGGCACAAAGCCATATCAGG
Found at i:63838817 original size:27 final size:27
Alignment explanation
Indices: 63838761--63838955 Score: 214
Period size: 27 Copynumber: 7.3 Consensus size: 27
63838751 GGGGCAAAAT
* * * *
63838761 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
63838787 GGTAATTCCACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
63838814 GGTAATTTTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
63838841 GGTAATTCTACCCTACAGGGGTATTAT-
1 GGTAATTCTACCCTACAGGGGTATT-TC
* *
63838868 GATAATTTTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
63838895 GGTAATTTTACCCTATAGGGGAATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
63838922 GGTATTTCAACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
63838949 AGTAATT
1 GGTAATT
63838956 TTGTAAATCG
Statistics
Matches: 141, Mismatches: 25, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
26 15 0.11
27 125 0.89
28 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:63838854 original size:54 final size:54
Alignment explanation
Indices: 63838760--63838955 Score: 243
Period size: 54 Copynumber: 3.6 Consensus size: 54
63838750 AGGGGCAAAA
* * * *
63838760 TGGTAATTTTACCCCACA-AGGTATCTCGGTAATTCCACCCTACAGGGGTATTT
1 TGGTAATTTTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTT
* *
63838813 TGGTAATTTTACCCTATAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTA
1 TGGTAATTTTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTT
* * * *
63838867 TGATAATTTTACCCTACAGGGGTATTTCGGTAATTTTACCCTATAGGGGAATTT
1 TGGTAATTTTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTT
* * * *
63838921 CGGT-ATTTCAACCCTACAAGGGTATTTCAGTAATT
1 TGGTAATTT-TACCCTACAGGGGTATTTCGGTAATT
63838956 TTGTAAATCG
Statistics
Matches: 124, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
53 20 0.16
54 104 0.84
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.36
Consensus pattern (54 bp):
TGGTAATTTTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTT
Found at i:63838884 original size:81 final size:81
Alignment explanation
Indices: 63838796--63838946 Score: 257
Period size: 81 Copynumber: 1.9 Consensus size: 81
63838786 CGGTAATTCC
* * * *
63838796 ACCCTACAGGGGTATTTTGGTAATTTTACCCTATAGGGGTATTTCGGTAATTCTACCCTACAGGG
1 ACCCTACAGGGGTATTTCGGTAATTTTACCCTATAGGGGAATTTCGGTAATTCAACCCTACAAGG
63838861 GTATTATGATAATTTT
66 GTATTATGATAATTTT
*
63838877 ACCCTACAGGGGTATTTCGGTAATTTTACCCTATAGGGGAATTTCGGTATTTCAACCCTACAAGG
1 ACCCTACAGGGGTATTTCGGTAATTTTACCCTATAGGGGAATTTCGGTAATTCAACCCTACAAGG
63838942 GTATT
66 GTATT
63838947 TCAGTAATTT
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
81 65 1.00
ACGTcount: A:0.25, C:0.18, G:0.21, T:0.36
Consensus pattern (81 bp):
ACCCTACAGGGGTATTTCGGTAATTTTACCCTATAGGGGAATTTCGGTAATTCAACCCTACAAGG
GTATTATGATAATTTT
Found at i:63838955 original size:81 final size:81
Alignment explanation
Indices: 63838761--63838957 Score: 254
Period size: 81 Copynumber: 2.4 Consensus size: 81
63838751 GGGGCAAAAT
** * * * ** *
63838761 GGTAATTTTACCCCACAA-GGTATCTCGGTAATTCCACCCTACAGGGGTATTTTGGTAATTTTAC
1 GGTAATTCAACCCTACAAGGGTATTTCAGTAATTTTACCCTACAGGGGTATTTCGGTAATTTTAC
*
63838825 CCTATAGGGGTATTTC
66 CCTATAGGGGAATTTC
* * *
63838841 GGTAATTCTACCCTACAGGGGTATTATGA-TAATTTTACCCTACAGGGGTATTTCGGTAATTTTA
1 GGTAATTCAACCCTACAAGGGTATT-TCAGTAATTTTACCCTACAGGGGTATTTCGGTAATTTTA
63838905 CCCTATAGGGGAATTTC
65 CCCTATAGGGGAATTTC
*
63838922 GGTATTTCAACCCTACAAGGGTATTTCAGTAATTTT
1 GGTAATTCAACCCTACAAGGGTATTTCAGTAATTTT
63838958 GTAAATCGAT
Statistics
Matches: 100, Mismatches: 14, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
80 17 0.17
81 82 0.82
82 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.36
Consensus pattern (81 bp):
GGTAATTCAACCCTACAAGGGTATTTCAGTAATTTTACCCTACAGGGGTATTTCGGTAATTTTAC
CCTATAGGGGAATTTC
Found at i:63839341 original size:27 final size:27
Alignment explanation
Indices: 63838976--63839361 Score: 405
Period size: 27 Copynumber: 14.3 Consensus size: 27
63838966 ATGGTAAAAC
** * *
63838976 GGTAATTTTGTAAATCAAGGGTACTTT
1 GGTAATTTTACAAACCAAGGGTATTTT
**** *
63839003 GGTAATTTTACAAGTTGAGGGTATTTC
1 GGTAATTTTACAAACCAAGGGTATTTT
** *** * *
63839030 AATAATTTTACAGGTCGAGGGTATTTC
1 GGTAATTTTACAAACCAAGGGTATTTT
* * * *
63839057 AGTAATTTCACAAATCAGGGGTATTTT
1 GGTAATTTTACAAACCAAGGGTATTTT
*
63839084 GGTAATTTTACAAACTAAGGGTATTTT
1 GGTAATTTTACAAACCAAGGGTATTTT
*
63839111 GGTAATTTTACAAACTAAGGGTATTTT
1 GGTAATTTTACAAACCAAGGGTATTTT
* *
63839138 GGTAATTTTACAAACTAGGGGTATTTT
1 GGTAATTTTACAAACCAAGGGTATTTT
* *
63839165 GGTAATTTTACAAACTAGGGGTATTTT
1 GGTAATTTTACAAACCAAGGGTATTTT
* *
63839192 GGTAATTTTATAAACAAAGGGTATTTT
1 GGTAATTTTACAAACCAAGGGTATTTT
*
63839219 AGTAATTTTACAAA-CAAGAGGTATTTT
1 GGTAATTTTACAAACCAAG-GGTATTTT
** *
63839246 GGTAATTTTGTAAAACAAGGGTATTTT
1 GGTAATTTTACAAACCAAGGGTATTTT
*
63839273 GGTAATTTTACAAACCAGGGGTATTTT
1 GGTAATTTTACAAACCAAGGGTATTTT
* *
63839300 GGTGATTTTATAAACCAAGGGTATTTT
1 GGTAATTTTACAAACCAAGGGTATTTT
* * * *
63839327 AGTGATTTTACAAACCAGGGGCATTTT
1 GGTAATTTTACAAACCAAGGGTATTTT
63839354 GGTAATTT
1 GGTAATTT
63839362 GGTAAACAAA
Statistics
Matches: 311, Mismatches: 46, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
26 3 0.01
27 304 0.98
28 4 0.01
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.39
Consensus pattern (27 bp):
GGTAATTTTACAAACCAAGGGTATTTT
Found at i:63846200 original size:42 final size:42
Alignment explanation
Indices: 63846121--63846226 Score: 144
Period size: 42 Copynumber: 2.5 Consensus size: 42
63846111 CGTGTAGGGG
* *
63846121 ACACAAGGTCGAACTACACG-CCATGGGGCAGACCGTGTGTC
1 ACACACGGCCGAACTACACGCCCATGGGGCAGACCGTGTGTC
*
63846162 ACACACGGCCGAACTACACGCCCATGGGGTAGACCGTGTGTC
1 ACACACGGCCGAACTACACGCCCATGGGGCAGACCGTGTGTC
* *
63846204 ACACACAGCCTAGA-TACACGCCC
1 ACACACGGCCGA-ACTACACGCCC
63846227 GTGTGCCTAC
Statistics
Matches: 58, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
41 18 0.31
42 39 0.67
43 1 0.02
ACGTcount: A:0.27, C:0.34, G:0.25, T:0.13
Consensus pattern (42 bp):
ACACACGGCCGAACTACACGCCCATGGGGCAGACCGTGTGTC
Found at i:63846990 original size:47 final size:46
Alignment explanation
Indices: 63846935--63847154 Score: 175
Period size: 47 Copynumber: 4.7 Consensus size: 46
63846925 GTAAGGTACT
*
63846935 GATGCCATGTCCCAGACATGGTCTTACACTTGCTCACATCTCAAGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCT-ACATCTCAAGTC
* * *
63846982 AATGCCATGTCCCAGACATGGTCTTACACTAACTATCATCTCGTAGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTA-CATCTC-AAGTC
* * * * * *
63847030 GATG-CGTGTCCTAAACAT-GTCTTACACTAGCTTTCGTCTCAATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGC-TACATCTCAA-GTC
* * * *
63847076 GATGCCATATCCTAGACATGGTCTTACACTGGAT-C-TCAT-AATGTAGC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTACATC-TCAA-GT--C
63847123 TGATG-CATGTCCCAGACAT-GTCTTACACTAGC
1 -GATGCCATGTCCCAGACATGGTCTTACACTAGC
63847155 CAACAACAAC
Statistics
Matches: 140, Mismatches: 23, Indels: 21
0.76 0.12 0.11
Matches are distributed among these distances:
45 7 0.05
46 37 0.26
47 74 0.53
48 22 0.16
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.30
Consensus pattern (46 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTACATCTCAAGTC
Found at i:63847128 original size:94 final size:94
Alignment explanation
Indices: 63846935--63847154 Score: 232
Period size: 94 Copynumber: 2.3 Consensus size: 94
63846925 GTAAGGTACT
* * ** * * * *
63846935 GATGCCATGTCCCAGACATGGTCTTACACTTGCTCACATCTCAA-GTCAATGCCATGTCCCAGAC
1 GATG-CATGTCCCAAACAT-GTCTTACACTAGCTTTCGTCTCAATGCCGATGCCATATCCCAGAC
*
63846999 ATGGTCTTACACTAACTATCATCTCGTAGTC
64 ATGGTCTTACACTAACTATCATATCGTAGTC
* * *
63847030 GATGCGTGTCCTAAACATGTCTTACACTAGCTTTCGTCTCAATGCCGATGCCATATCCTAGACAT
1 GATGCATGTCCCAAACATGTCTTACACTAGCTTTCGTCTCAATGCCGATGCCATATCCCAGACAT
* *
63847095 GGTCTTACACTGGA-TCTCATAAT-GTAG-C
66 GGTCTTACACT-AACTATCAT-ATCGTAGTC
*
63847123 TGATGCATGTCCCAGACATGTCTTACACTAGC
1 -GATGCATGTCCCAAACATGTCTTACACTAGC
63847155 CAACAACAAC
Statistics
Matches: 104, Mismatches: 17, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
93 21 0.20
94 77 0.74
95 6 0.06
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.30
Consensus pattern (94 bp):
GATGCATGTCCCAAACATGTCTTACACTAGCTTTCGTCTCAATGCCGATGCCATATCCCAGACAT
GGTCTTACACTAACTATCATATCGTAGTC
Found at i:63849496 original size:13 final size:13
Alignment explanation
Indices: 63849478--63849502 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
63849468 GAATGACCAA
63849478 ATGTTTGGCTATG
1 ATGTTTGGCTATG
63849491 ATGTTTGGCTAT
1 ATGTTTGGCTAT
63849503 CTATGTTCGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.08, G:0.28, T:0.48
Consensus pattern (13 bp):
ATGTTTGGCTATG
Found at i:63860148 original size:22 final size:23
Alignment explanation
Indices: 63860112--63860173 Score: 67
Period size: 22 Copynumber: 2.8 Consensus size: 23
63860102 GCAAATACGT
63860112 TTGGCACACAA-CCATAAT-CAGG
1 TTGGCACA-AAGCCATAATGCAGG
* *
63860134 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAATGCAGG
*
63860156 TTGGCGCAAAGCCATAAT
1 TTGGCACAAAGCCATAAT
63860174 TGGAATAATT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
21 3 0.09
22 28 0.85
23 2 0.06
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.21
Consensus pattern (23 bp):
TTGGCACAAAGCCATAATGCAGG
Found at i:63860380 original size:41 final size:40
Alignment explanation
Indices: 63860321--63860440 Score: 168
Period size: 41 Copynumber: 2.9 Consensus size: 40
63860311 AAGCCACTGA
* *
63860321 TGGATCCACGGTCATCAAGCAACCATGCGATCCTTAATTGG
1 TGGATCCAC-GTCATCAAGCAACCATGCGATCCTCAATCGG
*
63860362 TGGATCCACAGTCGTCAAGCAACCATGCGATCCTCAATCGG
1 TGGATCCAC-GTCATCAAGCAACCATGCGATCCTCAATCGG
* *
63860403 TGGATCCACGCTCATCAAGCAACCATGTGATCATCAAT
1 TGGATCCACG-TCATCAAGCAACCATGCGATCCTCAAT
63860441 TTCTTCCTCC
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
40 1 0.01
41 70 0.99
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (40 bp):
TGGATCCACGTCATCAAGCAACCATGCGATCCTCAATCGG
Found at i:63860916 original size:27 final size:27
Alignment explanation
Indices: 63860687--63861050 Score: 317
Period size: 27 Copynumber: 13.4 Consensus size: 27
63860677 ATAAGGGTGC
* * *
63860687 TTTGGTAAATCTACAAACCAAGGGTAT
1 TTTGGTAATTTTACAAATCAAGGGTAT
* * * **
63860714 TTCGGTAATTTTTCAAACCAATCGTAT
1 TTTGGTAATTTTACAAATCAAGGGTAT
* * *
63860741 TTCT-GTAAGTTTTGA-AAGTTAAAGGTAT
1 TT-TGGTAA-TTTT-ACAAATCAAGGGTAT
** *
63860769 TTCT-GTAATTTTGTAAATTAAGGGTAT
1 TT-TGGTAATTTTACAAATCAAGGGTAT
* *
63860796 TTCT-GTAATTTTCCAAATCAAAGGTAT
1 TT-TGGTAATTTTACAAATCAAGGGTAT
* *
63860823 TTTGGTAATTTTTCAAATCAGGGGTAT
1 TTTGGTAATTTTACAAATCAAGGGTAT
63860850 TTTGGTAATTTTACAAATCAAGGGTAT
1 TTTGGTAATTTTACAAATCAAGGGTAT
* *
63860877 TTTGGTAATTTTACAAGTCGAGGGTAT
1 TTTGGTAATTTTACAAATCAAGGGTAT
* ** *
63860904 TTCGGTAATTTTACAGGTCGAGGGTAT
1 TTTGGTAATTTTACAAATCAAGGGTAT
* * * *
63860931 TTCGATAATTTCACAAATTAAGGGTAT
1 TTTGGTAATTTTACAAATCAAGGGTAT
* *
63860958 TTTGGTAATTTTACAAA-CTAGGGGTGT
1 TTTGGTAATTTTACAAATC-AAGGGTAT
* *
63860985 TTTGGTAATTTTACAAGTCAGGGGTAT
1 TTTGGTAATTTTACAAATCAAGGGTAT
* *
63861012 TTTGGTAATTTTTCTAAT-AGAGGGTAT
1 TTTGGTAATTTTACAAATCA-AGGGTAT
63861039 TTTGGTAATTTT
1 TTTGGTAATTTT
63861051 GTAAACCAAC
Statistics
Matches: 282, Mismatches: 47, Indels: 16
0.82 0.14 0.05
Matches are distributed among these distances:
26 2 0.01
27 259 0.92
28 21 0.07
ACGTcount: A:0.29, C:0.09, G:0.20, T:0.42
Consensus pattern (27 bp):
TTTGGTAATTTTACAAATCAAGGGTAT
Found at i:63861064 original size:27 final size:26
Alignment explanation
Indices: 63861034--63861101 Score: 93
Period size: 26 Copynumber: 2.6 Consensus size: 26
63861024 TCTAATAGAG
**
63861034 GGTATTTTGGTAATTTTGTAAACCAA
1 GGTATTTCAGTAATTTTGTAAACCAA
63861060 CGGTA-TTCAGTAATTTTGTAAACCAA
1 -GGTATTTCAGTAATTTTGTAAACCAA
63861086 GGCTATTTCAGTAATT
1 GG-TATTTCAGTAATT
63861102 GCCATAATAC
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
25 2 0.05
26 21 0.57
27 14 0.38
ACGTcount: A:0.31, C:0.12, G:0.18, T:0.40
Consensus pattern (26 bp):
GGTATTTCAGTAATTTTGTAAACCAA
Found at i:63861072 original size:26 final size:27
Alignment explanation
Indices: 63861043--63861101 Score: 95
Period size: 26 Copynumber: 2.2 Consensus size: 27
63861033 GGGTATTTTG
63861043 GTAATTTTGTAAACCAACGG-TA-TTCA
1 GTAATTTTGTAAACCAA-GGCTATTTCA
63861069 GTAATTTTGTAAACCAAGGCTATTTCA
1 GTAATTTTGTAAACCAAGGCTATTTCA
63861096 GTAATT
1 GTAATT
63861102 GCCATAATAC
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
25 2 0.06
26 19 0.61
27 10 0.32
ACGTcount: A:0.34, C:0.14, G:0.15, T:0.37
Consensus pattern (27 bp):
GTAATTTTGTAAACCAAGGCTATTTCA
Found at i:63864391 original size:41 final size:41
Alignment explanation
Indices: 63864330--63864448 Score: 175
Period size: 41 Copynumber: 2.9 Consensus size: 41
63864320 TAAAAGCCAC
*
63864330 CGGTGGATCCACAGTCGTCAAGCAACCATGCGATCCTTAAT
1 CGGTGGATCCACAGTCGTCAAGCAACCATGCGATCCTGAAT
* *
63864371 CGGTGGATCTACAGTTGTCAAGCAACCATGCGATCCTGAAT
1 CGGTGGATCCACAGTCGTCAAGCAACCATGCGATCCTGAAT
* * * *
63864412 CAGTGGGTCCACGGTCGTCAAGCAACCATGTGATCCT
1 CGGTGGATCCACAGTCGTCAAGCAACCATGCGATCCT
63864449 CAATTTCTTC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 69 1.00
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (41 bp):
CGGTGGATCCACAGTCGTCAAGCAACCATGCGATCCTGAAT
Found at i:63864757 original size:27 final size:27
Alignment explanation
Indices: 63864683--63865047 Score: 226
Period size: 27 Copynumber: 13.7 Consensus size: 27
63864673 TTTCACCCTA
* * *
63864683 CAAGGGTGTTTTGGTAAATCTGCAAAC
1 CAAGGGTATTTTGGTAATTTTGCAAAC
63864710 CAAGGGTATTTTGGTAATTTTGCAAAC
1 CAAGGGTATTTTGGTAATTTTGCAAAC
* * * *
63864737 TAATGGTATTTCT-GTATTTTTTG-AAAGT
1 CAAGGGTATTT-TGGTA-ATTTTGCAAA-C
* * *
63864765 CAAGGGTATTTTTGTAA--TTGTAAAT
1 CAAGGGTATTTTGGTAATTTTGCAAAC
* * *
63864790 C-AGTGGT-TTTT--TTATTTTCCAAAT
1 CAAG-GGTATTTTGGTAATTTTGCAAAC
* * *
63864814 TAAGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTGCAAAC
* * *
63864841 CAAGGGTGTTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTGCAAAC
* * **
63864868 CGAGGGTATTTTGGTAATTTTACAAGT
1 CAAGGGTATTTTGGTAATTTTGCAAAC
* * * ***
63864895 CGAGGGTATTTTGATAATTTTACAGGT
1 CAAGGGTATTTTGGTAATTTTGCAAAC
* ** *
63864922 CGAGGGTATTTTGGTAATTTCACAAAA
1 CAAGGGTATTTTGGTAATTTTGCAAAC
* * * * *
63864949 TAGGGGTAGTTTGGTAATTTTGCTAAT
1 CAAGGGTATTTTGGTAATTTTGCAAAC
* *
63864976 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTGCAAAC
* * *
63865003 CAAGGTTA-TTTAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTGCAAAC
* *
63865029 CAAGGGCATTTTAGTAATT
1 CAAGGGTATTTTGGTAATT
63865048 CTACCCTACA
Statistics
Matches: 277, Mismatches: 48, Indels: 26
0.79 0.14 0.07
Matches are distributed among these distances:
22 2 0.01
24 15 0.05
25 14 0.05
26 26 0.09
27 202 0.73
28 18 0.06
ACGTcount: A:0.28, C:0.08, G:0.22, T:0.42
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTGCAAAC
Found at i:63864874 original size:54 final size:54
Alignment explanation
Indices: 63864683--63864996 Score: 252
Period size: 54 Copynumber: 5.9 Consensus size: 54
63864673 TTTCACCCTA
* * * * *
63864683 CAAGGGTGTTTTGGTAAATCTGCAAACCAAGGGTATTTTGGTAATTTTGCAAA-
1 CAAGGGTGTTTTGGTAATTTTACAAATCAAGGGTATTTTGGTAATTTTACAAAT
* * * ** * *
63864736 CTAATGGTATTTCT-GTATTTTTTGAAAGTCAAGGGTATTTTTGTAATTGT--AAAT
1 C-AAGGGTGTTT-TGGTAATTTTACAAA-TCAAGGGTATTTTGGTAATTTTACAAAT
* * *
63864790 C-AGTGGT-TTTT--TTATTTTCCAAATTAAGGGTATTTTGGTAATTTTACAAAT
1 CAAG-GGTGTTTTGGTAATTTTACAAATCAAGGGTATTTTGGTAATTTTACAAAT
* *
63864841 CAAGGGTGTTTTGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAAGT
1 CAAGGGTGTTTTGGTAATTTTACAAATCAAGGGTATTTTGGTAATTTTACAAAT
* * * ** * *
63864895 CGAGGGTATTTTGATAATTTTACAGGTCGAGGGTATTTTGGTAATTTCACAAAAT
1 CAAGGGTGTTTTGGTAATTTTACAAATCAAGGGTATTTTGGTAATTTTAC-AAAT
* * * *
63864950 -AGGGGTAG-TTTGGTAATTTTGCTAATCGAGGGTATTTTGGTAATTTT
1 CAAGGGT-GTTTTGGTAATTTTACAAATCAAGGGTATTTTGGTAATTTT
63864997 GTAAACCAAG
Statistics
Matches: 209, Mismatches: 39, Indels: 25
0.77 0.14 0.09
Matches are distributed among these distances:
49 19 0.09
50 8 0.04
51 9 0.04
52 10 0.05
53 7 0.03
54 133 0.64
55 23 0.11
ACGTcount: A:0.27, C:0.08, G:0.23, T:0.42
Consensus pattern (54 bp):
CAAGGGTGTTTTGGTAATTTTACAAATCAAGGGTATTTTGGTAATTTTACAAAT
Found at i:63865013 original size:81 final size:81
Alignment explanation
Indices: 63864816--63864996 Score: 249
Period size: 81 Copynumber: 2.2 Consensus size: 81
63864806 TTCCAAATTA
* * * *
63864816 AGGGTATTTTGGTAATTTTACAAATCAAGGGTGTTTTGGTAATTTTACAAATCGAGGGTATTTTG
1 AGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTTGGTAATTTCACAAATAGAGGGTAGTTTG
63864881 GTAATTTTACAAGTCG
66 GTAATTTTACAAGTCG
* ** *
63864897 AGGGTATTTTGATAATTTTACAGGTCGAGGGTATTTTGGTAATTTCACAAAATAG-GGGTAGTTT
1 AGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTTGGTAATTTCAC-AAATAGAGGGTAGTTT
*
63864961 GGTAATTTTGCTAA-TCG
65 GGTAATTTTAC-AAGTCG
63864978 AGGGTATTTTGGTAATTTT
1 AGGGTATTTTGGTAATTTT
63864997 GTAAACCAAG
Statistics
Matches: 88, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
81 81 0.92
82 7 0.08
ACGTcount: A:0.27, C:0.07, G:0.25, T:0.41
Consensus pattern (81 bp):
AGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTTGGTAATTTCACAAATAGAGGGTAGTTTG
GTAATTTTACAAGTCG
Found at i:63865025 original size:26 final size:27
Alignment explanation
Indices: 63864978--63865047 Score: 97
Period size: 26 Copynumber: 2.6 Consensus size: 27
63864968 TTGCTAATCG
* *
63864978 AGGGTATTTTGGTAATTTTGTAAACCA
1 AGGGCATTTTAGTAATTTTGTAAACCA
**
63865005 AGGTTA-TTTAGTAATTTTGTAAACCA
1 AGGGCATTTTAGTAATTTTGTAAACCA
63865031 AGGGCATTTTAGTAATT
1 AGGGCATTTTAGTAATT
63865048 CTACCCTACA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
26 23 0.61
27 15 0.39
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.41
Consensus pattern (27 bp):
AGGGCATTTTAGTAATTTTGTAAACCA
Found at i:63865059 original size:27 final size:27
Alignment explanation
Indices: 63865029--63865139 Score: 116
Period size: 27 Copynumber: 4.1 Consensus size: 27
63865019 TTTTGTAAAC
*
63865029 CAAGGGCATTTTAGTAATTCTACCCTA
1 CAAGGGCATTTCAGTAATTCTACCCTA
***
63865056 CAAGGGCATTTCAGTAATTCTAAGGTA
1 CAAGGGCATTTCAGTAATTCTACCCTA
* * *
63865083 TAGGGGCATTTCAGTAATTCTACCCTG
1 CAAGGGCATTTCAGTAATTCTACCCTA
* * *
63865110 C-AGAGGTATTTCAGTAATACTAGCCTA
1 CAAG-GGCATTTCAGTAATTCTACCCTA
63865137 CAA
1 CAA
63865140 ATATGAGATT
Statistics
Matches: 66, Mismatches: 16, Indels: 3
0.78 0.19 0.04
Matches are distributed among these distances:
26 1 0.02
27 64 0.97
28 1 0.02
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.31
Consensus pattern (27 bp):
CAAGGGCATTTCAGTAATTCTACCCTA
Found at i:63870797 original size:42 final size:43
Alignment explanation
Indices: 63870737--63870894 Score: 155
Period size: 43 Copynumber: 3.7 Consensus size: 43
63870727 TATGTGTTCT
* *
63870737 CGTGTAAGACCACATCT-GGATGTTGGCATTGATATGTAATTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATTGATATGTAATTA
* * * * * *
63870779 CGTGTAAGACCATGTCTGGGACATCGGAATTG-TATTTGATT-
1 CGTGTAAGACCACGTCTGGGACGTTGGCATTGATATGTAATTA
* * *
63870820 CGTGTAAAACC-CTGTCTGGGACAG-TGGCATCGATATGTTATTA
1 CGTGTAAGACCAC-GTCTGGGAC-GTTGGCATTGATATGTAATTA
*
63870863 CATGTAAGACCACGTCTGGGACGTTGGCATTG
1 CGTGTAAGACCACGTCTGGGACGTTGGCATTG
63870895 TACGATATGT
Statistics
Matches: 90, Mismatches: 19, Indels: 13
0.74 0.16 0.11
Matches are distributed among these distances:
41 24 0.27
42 30 0.33
43 35 0.39
44 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACGTTGGCATTGATATGTAATTA
Found at i:63874357 original size:11 final size:11
Alignment explanation
Indices: 63874331--63874363 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
63874321 ATTGATATGT
*
63874331 TTGGTATTG-G
1 TTGGTATTGAA
63874341 TTGGTATTGAA
1 TTGGTATTGAA
63874352 TTGGTATTGAA
1 TTGGTATTGAA
63874363 T
1 T
63874364 GCCTTTTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
10 9 0.43
11 12 0.57
ACGTcount: A:0.21, C:0.00, G:0.30, T:0.48
Consensus pattern (11 bp):
TTGGTATTGAA
Found at i:63875889 original size:27 final size:27
Alignment explanation
Indices: 63875842--63875893 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
63875832 GTCATACATA
*
63875842 TCATAGGGGTATATCAGTCATTTTACC
1 TCATAGGGGTATATCAATCATTTTACC
63875869 TCATAGGGGTATAAT-AATCATTTTA
1 TCATAGGGGTAT-ATCAATCATTTTA
63875894 TTAGTATAGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 21 0.91
28 2 0.09
ACGTcount: A:0.31, C:0.13, G:0.17, T:0.38
Consensus pattern (27 bp):
TCATAGGGGTATATCAATCATTTTACC
Found at i:63881559 original size:46 final size:46
Alignment explanation
Indices: 63881507--63881682 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
63881497 TGGTTGAGCA
63881507 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
63881553 TTCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
63881598 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
63881646 CCCGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
63881683 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.56
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:63881663 original size:93 final size:93
Alignment explanation
Indices: 63881504--63881675 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
63881494 GGATGGTTGA
* ** *
63881504 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
63881569 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
63881597 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
63881662 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
63881676 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:63886093 original size:31 final size:33
Alignment explanation
Indices: 63886058--63886118 Score: 81
Period size: 31 Copynumber: 1.9 Consensus size: 33
63886048 GCAAACTTTT
63886058 CTTTGCTCTTT-ATTCTTTTGAA-CAAACATAC
1 CTTTGCTCTTTCATTCTTTTGAATCAAACATAC
* * *
63886089 CTTTGTTCTTTCATTTTTTTTAATCAAACA
1 CTTTGCTCTTTCATTCTTTTGAATCAAACA
63886119 AGTGAAAAGC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
31 10 0.40
32 9 0.36
33 6 0.24
ACGTcount: A:0.25, C:0.20, G:0.05, T:0.51
Consensus pattern (33 bp):
CTTTGCTCTTTCATTCTTTTGAATCAAACATAC
Found at i:63888063 original size:13 final size:13
Alignment explanation
Indices: 63888047--63888072 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
63888037 TCACACGGCT
63888047 TGGGTACACGCCC
1 TGGGTACACGCCC
63888060 TGGGTACACGCCC
1 TGGGTACACGCCC
63888073 ATGTCCTAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.38, G:0.31, T:0.15
Consensus pattern (13 bp):
TGGGTACACGCCC
Found at i:63889386 original size:48 final size:47
Alignment explanation
Indices: 63889208--63889389 Score: 186
Period size: 48 Copynumber: 3.8 Consensus size: 47
63889198 GACAACATAT
*
63889208 CGATGCCATATCCCAGATATGGTCTTATAC-GAAGTCTCATATCAATGC
1 CGATGCCATATCCCAGACATGGTCTTATACGGAA-TCTCATAT-AATGC
* * * * *
63889256 CGATGCCATGTCCCAGACATGGTCTTATACGAAACCTCACATTGATGC
1 CGATGCCATATCCCAGACATGGTCTTATACGGAATCTCATA-TAATGC
* * * * *
63889304 CAATGCCATATCCCAGATATGGTCTTACATGGGATCTCATACTAATGC
1 CGATGCCATATCCCAGACATGGTCTTATACGGAATCTCATA-TAATGC
* * * *
63889352 TGATGCCATGTCCCAGACATGGTATTATACGGGATCTC
1 CGATGCCATATCCCAGACATGGTCTTATACGGAATCTC
63889390 TTATCTATGC
Statistics
Matches: 108, Mismatches: 24, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
48 105 0.97
49 3 0.03
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.28
Consensus pattern (47 bp):
CGATGCCATATCCCAGACATGGTCTTATACGGAATCTCATATAATGC
Found at i:63889419 original size:138 final size:136
Alignment explanation
Indices: 63889258--63889527 Score: 303
Period size: 138 Copynumber: 2.0 Consensus size: 136
63889248 ATCAATGCCG
* * * *
63889258 ATGCCATGTCCCAGACATGGTCTTATACGAAACCTCACATT-GATGCC-AATGCCATATCCC-AG
1 ATGCCATGTCCCAAACATAGTCTTACAC-AAA-ATCAC-TTAGATGCCGAA-GCCATATCCCTA-
** * * * *
63889320 ATATGGTCTTACATGGGATCTCATACTAATGCTGATGCCATGTCCCAGACATGGTATTATACGGG
61 ATATGGTCTTACACAGGAACACATACTAATGCTGATGCCATGTCCCAGACATGGTATTACACAGG
63889385 ATCTCTTATCT
126 ATCTCTTATCT
* *
63889396 ATGCCATGTCCCAAATATAGTCTTACACAAAATCACTTAACGATGCCGAAGTCATATCCCTAATA
1 ATGCCATGTCCCAAACATAGTCTTACACAAAATCACTT-A-GATGCCGAAGCCATATCCCTAATA
* * * * *
63889461 TGGTCTTATACAGGAACACATATTAATGTTGATGCCATGTCCCAGGCATGGTCTTACACAGGATC
64 TGGTCTTACACAGGAACACATACTAATGCTGATGCCATGTCCCAGACATGGTATTACACAGGATC
63889526 TC
129 TC
63889528 ATTAACCATG
Statistics
Matches: 110, Mismatches: 17, Indels: 10
0.80 0.12 0.07
Matches are distributed among these distances:
135 2 0.02
136 4 0.04
137 3 0.03
138 98 0.89
139 3 0.03
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (136 bp):
ATGCCATGTCCCAAACATAGTCTTACACAAAATCACTTAGATGCCGAAGCCATATCCCTAATATG
GTCTTACACAGGAACACATACTAATGCTGATGCCATGTCCCAGACATGGTATTACACAGGATCTC
TTATCT
Found at i:63904709 original size:8 final size:8
Alignment explanation
Indices: 63904698--63904747 Score: 57
Period size: 8 Copynumber: 6.2 Consensus size: 8
63904688 GAAAAAGCTT
*
63904698 AAAAGCCG
1 AAAAGTCG
63904706 AAAAGTCG
1 AAAAGTCG
63904714 AAAAGTCG
1 AAAAGTCG
*
63904722 AAAA-TCCA
1 AAAAGT-CG
*
63904730 AAAATTCG
1 AAAAGTCG
63904738 AAAAGTCG
1 AAAAGTCG
63904746 AA
1 AA
63904748 GGTACGGCTT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
7 1 0.03
8 34 0.94
9 1 0.03
ACGTcount: A:0.54, C:0.16, G:0.18, T:0.12
Consensus pattern (8 bp):
AAAAGTCG
Found at i:63904725 original size:24 final size:24
Alignment explanation
Indices: 63904698--63904747 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
63904688 GAAAAAGCTT
*
63904698 AAAAGCCGAAAAGTCGAAAAGTCG
1 AAAAGCCAAAAAGTCGAAAAGTCG
* *
63904722 AAAATCCAAAAATTCGAAAAGTCG
1 AAAAGCCAAAAAGTCGAAAAGTCG
63904746 AA
1 AA
63904748 GGTACGGCTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.54, C:0.16, G:0.18, T:0.12
Consensus pattern (24 bp):
AAAAGCCAAAAAGTCGAAAAGTCG
Found at i:63906475 original size:42 final size:43
Alignment explanation
Indices: 63906398--63906489 Score: 116
Period size: 42 Copynumber: 2.2 Consensus size: 43
63906388 TCCTAGACGT
* * **
63906398 GGTCTTACATGTAATTTAATATCGATGCCTCTGTCCCAGACAG
1 GGTCTTACATGTAAATCAATATCGATGCCAATGTCCCAGACAG
*
63906441 GGTCTTACATG-AAATCAGATA-CGATGCCAATGTCCCAGACAT
1 GGTCTTACATGTAAATCA-ATATCGATGCCAATGTCCCAGACAG
63906483 GGTCTTA
1 GGTCTTA
63906490 TACATAAATC
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
42 29 0.67
43 14 0.33
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (43 bp):
GGTCTTACATGTAAATCAATATCGATGCCAATGTCCCAGACAG
Found at i:63916418 original size:23 final size:23
Alignment explanation
Indices: 63916341--63916421 Score: 69
Period size: 23 Copynumber: 3.6 Consensus size: 23
63916331 ATTGAGCTAA
* * *
63916341 AAACTGTAAGCTCTATTAAGCTG
1 AAACAGTAAGCTCAAATAAGCTG
*
63916364 -AACAGTAAGCTCAAAAAAGCT-
1 AAACAGTAAGCTCAAATAAGCTG
* *
63916385 AAATC-GATAAGCTCCAATGAGCTG
1 AAA-CAG-TAAGCTCAAATAAGCTG
63916409 AAACAGTAAGCTC
1 AAACAGTAAGCTC
63916422 TTACGAGCTG
Statistics
Matches: 46, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
22 20 0.43
23 22 0.48
24 4 0.09
ACGTcount: A:0.42, C:0.20, G:0.17, T:0.21
Consensus pattern (23 bp):
AAACAGTAAGCTCAAATAAGCTG
Found at i:63919484 original size:51 final size:51
Alignment explanation
Indices: 63919407--63919604 Score: 317
Period size: 51 Copynumber: 3.9 Consensus size: 51
63919397 CAGATACACG
*
63919407 GTGGCCTTCACATAGTACCACCCTTGTAG-CCAAAGCTATTTTATTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGT-GTCCAAAGCTATTTTATTCACAAA
*
63919458 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCATAAA
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
* * *
63919509 GTGGCCTTCACATAGTGCCACACTTGTTTCCAAAGCTATTATATTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
* *
63919560 GTGGCCTTCACATAGTACCATACTTGTGTCCAAAGTTATTTTATT
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATT
63919605 ACTAAGGTTC
Statistics
Matches: 135, Mismatches: 11, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
50 1 0.01
51 134 0.99
ACGTcount: A:0.28, C:0.24, G:0.14, T:0.33
Consensus pattern (51 bp):
GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
Found at i:63919685 original size:52 final size:52
Alignment explanation
Indices: 63919629--63919907 Score: 434
Period size: 52 Copynumber: 5.4 Consensus size: 52
63919619 GGGAAATTTC
* * *
63919629 TCACTTGGCACCA-TGCCATGGACTTATTTCACTTAGATTCCATGGACTTATT
1 TCACTTAGCA-CATTGCCATGGACTTATTTCACTTAGATGCCATGGTCTTATT
63919681 TCACTTAGCACATTGCCATGGACTTATTTCACTTAGATGCCATGGTCTTATT
1 TCACTTAGCACATTGCCATGGACTTATTTCACTTAGATGCCATGGTCTTATT
* * *
63919733 TCACTTAGCACATTTCCATGGACTTATTTCATTTAGATGACATGGTCTTATT
1 TCACTTAGCACATTGCCATGGACTTATTTCACTTAGATGCCATGGTCTTATT
*
63919785 TCACTTAGCACATTGTCATGGACTTATTTCACTTAGATGCCATGGTCTTATT
1 TCACTTAGCACATTGCCATGGACTTATTTCACTTAGATGCCATGGTCTTATT
* *
63919837 TCATTTAGCACATTGCCATGGACTTATTTCACTTAGATGACATGGTCTTATT
1 TCACTTAGCACATTGCCATGGACTTATTTCACTTAGATGCCATGGTCTTATT
* * *
63919889 TCAATTAGCAAAATGCCAT
1 TCACTTAGCACATTGCCAT
63919908 ATCCTAGATA
Statistics
Matches: 210, Mismatches: 16, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
51 2 0.01
52 208 0.99
ACGTcount: A:0.25, C:0.22, G:0.15, T:0.39
Consensus pattern (52 bp):
TCACTTAGCACATTGCCATGGACTTATTTCACTTAGATGCCATGGTCTTATT
Found at i:63940636 original size:22 final size:22
Alignment explanation
Indices: 63940609--63940654 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
63940599 TATGTGTTAG
63940609 GCTTTTGAATTCAAATTGAGTT
1 GCTTTTGAATTCAAATTGAGTT
63940631 GCTTTTGAATTCAAATTGAGTT
1 GCTTTTGAATTCAAATTGAGTT
63940653 GC
1 GC
63940655 ATTATGCTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.26, C:0.11, G:0.20, T:0.43
Consensus pattern (22 bp):
GCTTTTGAATTCAAATTGAGTT
Found at i:63941796 original size:32 final size:32
Alignment explanation
Indices: 63941759--63941837 Score: 149
Period size: 32 Copynumber: 2.5 Consensus size: 32
63941749 TTTGGAGAGT
63941759 CACATGCCCGTGTGGGTAGGGCCGTGTGGTCA
1 CACATGCCCGTGTGGGTAGGGCCGTGTGGTCA
63941791 CACATGCCCGTGTGGGTAGGGCCGTGTGGTCA
1 CACATGCCCGTGTGGGTAGGGCCGTGTGGTCA
*
63941823 CACATGCCCATGTGG
1 CACATGCCCGTGTGG
63941838 CTTGGGACAC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 46 1.00
ACGTcount: A:0.14, C:0.27, G:0.38, T:0.22
Consensus pattern (32 bp):
CACATGCCCGTGTGGGTAGGGCCGTGTGGTCA
Found at i:63945174 original size:16 final size:16
Alignment explanation
Indices: 63945153--63945198 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 16
63945143 GTGTAACGCC
63945153 CCAAAAATCCTGAAAT
1 CCAAAAATCCTGAAAT
**
63945169 CCAAAAATCCAAAAAT
1 CCAAAAATCCTGAAAT
* *
63945185 CCTAAAATCTTGAA
1 CCAAAAATCCTGAA
63945199 TTTTCTTTGT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.52, C:0.24, G:0.04, T:0.20
Consensus pattern (16 bp):
CCAAAAATCCTGAAAT
Found at i:63951357 original size:9 final size:9
Alignment explanation
Indices: 63951343--63951374 Score: 50
Period size: 8 Copynumber: 3.8 Consensus size: 9
63951333 GTTGTAACGC
63951343 CCCAAAAAT
1 CCCAAAAAT
63951352 CCC-AAAAT
1 CCCAAAAAT
63951360 -CCAAAAAT
1 CCCAAAAAT
63951368 CCCAAAA
1 CCCAAAA
63951375 TCTTGAATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
7 2 0.10
8 10 0.48
9 9 0.43
ACGTcount: A:0.56, C:0.34, G:0.00, T:0.09
Consensus pattern (9 bp):
CCCAAAAAT
Found at i:63951360 original size:8 final size:8
Alignment explanation
Indices: 63951347--63951376 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
63951337 TAACGCCCCA
63951347 AAAATCCC
1 AAAATCCC
*
63951355 AAAATCCA
1 AAAATCCC
63951363 AAAATCCC
1 AAAATCCC
63951371 AAAATC
1 AAAATC
63951377 TTGAATTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.57, C:0.30, G:0.00, T:0.13
Consensus pattern (8 bp):
AAAATCCC
Found at i:63951365 original size:16 final size:16
Alignment explanation
Indices: 63951344--63951376 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
63951334 TTGTAACGCC
63951344 CCAAAAATCCCAAAAT
1 CCAAAAATCCCAAAAT
63951360 CCAAAAATCCCAAAAT
1 CCAAAAATCCCAAAAT
63951376 C
1 C
63951377 TTGAATTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.55, C:0.33, G:0.00, T:0.12
Consensus pattern (16 bp):
CCAAAAATCCCAAAAT
Found at i:63954599 original size:40 final size:39
Alignment explanation
Indices: 63954552--63954643 Score: 107
Period size: 40 Copynumber: 2.3 Consensus size: 39
63954542 CTCAGTGTCT
*
63954552 CACACTTAGTGCCTCA-TATAGCCAAAGTAATTCCAACTCG
1 CACACTTAGTGCCT-ATTATAGCCAAAGCAATTCCAA-TCG
* **
63954592 CACACTTAGTG-CTATTTATAGCCAAAGCAGTTTGAATCG
1 CACACTTAGTGCCTA-TTATAGCCAAAGCAATTCCAATCG
63954631 CACACTTAGTGCC
1 CACACTTAGTGCC
63954644 AAACATAGTC
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
38 1 0.02
39 16 0.36
40 28 0.62
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (39 bp):
CACACTTAGTGCCTATTATAGCCAAAGCAATTCCAATCG
Found at i:63961414 original size:46 final size:46
Alignment explanation
Indices: 63961364--63961495 Score: 126
Period size: 46 Copynumber: 2.9 Consensus size: 46
63961354 TCTAAACATG
* * *
63961364 TATTCTCCTGCCTCCAACATATGCAAGAGCTGGGAACTTGAATCTA
1 TATTCTCCTGCCTACAACATATGCAAGAGCTGGGAACCTGAAACTA
* *
63961410 TATTCTCCAGTCC-ACAACATATGCTGAA-A-TTGGGAACCTGAAACTA
1 TATTCTCCTG-CCTACAACATATGC--AAGAGCTGGGAACCTGAAACTA
** * * *
63961456 TATTCTCCTATCTGCAACATATGTAGGAGCTGGGAACCTG
1 TATTCTCCTGCCTACAACATATGCAAGAGCTGGGAACCTG
63961496 GGCAAGAACT
Statistics
Matches: 68, Mismatches: 12, Indels: 12
0.74 0.13 0.13
Matches are distributed among these distances:
44 1 0.01
45 2 0.03
46 60 0.88
47 3 0.04
48 2 0.03
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (46 bp):
TATTCTCCTGCCTACAACATATGCAAGAGCTGGGAACCTGAAACTA
Found at i:63961475 original size:92 final size:92
Alignment explanation
Indices: 63961318--63961492 Score: 219
Period size: 92 Copynumber: 1.9 Consensus size: 92
63961308 ATTATTACTG
* * * * * *
63961318 TATTCTCCTGTCCACAACATATATAGGATTTGGGAATCTAAACATGTATTCTCCTGCCTCCAACA
1 TATTCTCCAGTCCACAACATATATAGAAATTGGGAACCTAAACATATATTCTCCTACCTCCAACA
63961383 TATGCAAGAGCTGGGAACTTGAATCTA
66 TATGCAAGAGCTGGGAACTTGAATCTA
* * *
63961410 TATTCTCCAGTCCACAACATATGCT-GAAATTGGGAACCTGAAAC-TATATTCTCCTATCTGCAA
1 TATTCTCCAGTCCACAACATAT-ATAGAAATTGGGAACCT-AAACATATATTCTCCTACCTCCAA
* *
63961473 CATATGTAGGAGCTGGGAAC
64 CATATGCAAGAGCTGGGAAC
63961493 CTGGGCAAGA
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
92 65 0.93
93 5 0.07
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (92 bp):
TATTCTCCAGTCCACAACATATATAGAAATTGGGAACCTAAACATATATTCTCCTACCTCCAACA
TATGCAAGAGCTGGGAACTTGAATCTA
Found at i:63964759 original size:24 final size:22
Alignment explanation
Indices: 63964731--63964784 Score: 72
Period size: 24 Copynumber: 2.4 Consensus size: 22
63964721 GCTAAAGTTT
*
63964731 AAATTTTAAATTTGGTTAATAAAA
1 AAATTTTAAAGTTGG-TAA-AAAA
*
63964755 TAATTTTAAAGTTGGTAAAAAA
1 AAATTTTAAAGTTGGTAAAAAA
63964777 AAATTTTA
1 AAATTTTA
63964785 TCTATTTTCT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
22 11 0.41
23 3 0.11
24 13 0.48
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (22 bp):
AAATTTTAAAGTTGGTAAAAAA
Found at i:63965960 original size:147 final size:144
Alignment explanation
Indices: 63965644--63965965 Score: 364
Period size: 147 Copynumber: 2.2 Consensus size: 144
63965634 AAAAGAAAGA
* * * * *
63965644 AGAAAGTTTAGATTTTGAAAAAAAAAATATGTTTTTTTTTAGTCATTTTAAAGGAAAGTTTAAAA
1 AGAAAATTAAGATTTT-AAAAAAAAAA-ATATATTTTTTAAGTCATTTTAAAGGAAAGTTTAAAA
*
63965709 TTCTAAAACAAAGTTTTGATTTTTTTTAACTATTTCAAAGTAAAAGCTTCAATCTTTAAGAAAAA
64 TTCTAAAACAAAGTTTTGATTTTTTTTAACTATTCCAAAGTAAAAGCTTCAATCTTTAAGAAAAA
*
63965774 TAGTGTTTTTTTTAAGGG
129 TAATGTTTTTTTTAA--G
* * *
63965792 AGAAAATTAAGATTTTGAAAAAGAAAAATATATTTTTTAAGTCATTTTAAAGGAAATTTTAAATT
1 AGAAAATTAAGATTTT-AAAAAAAAAAATATATTTTTTAAGTCATTTTAAAGGAAAGTTTAAAAT
* * * ** * *
63965857 TTTAAAACAAAGTTTTGATTTTTTTTAACTATTCCGAAA-T-AAGGTTTTGATTTTTAAGAAAAG
65 TCTAAAACAAAGTTTTGATTTTTTTTAACTATTCC-AAAGTAAAAGCTTCAATCTTTAAGAAAAA
63965920 TAATGATTTTTTTTTAA-
129 TAATG--TTTTTTTTAAG
*
63965937 AGAAAACTT-TGATTTTACAAAAAAAAAAT
1 AGAAAA-TTAAGATTTTA-AAAAAAAAAAT
63965966 TCGACCACCG
Statistics
Matches: 150, Mismatches: 19, Indels: 13
0.82 0.10 0.07
Matches are distributed among these distances:
144 1 0.01
145 22 0.15
146 23 0.15
147 67 0.45
148 37 0.25
ACGTcount: A:0.42, C:0.05, G:0.11, T:0.42
Consensus pattern (144 bp):
AGAAAATTAAGATTTTAAAAAAAAAAATATATTTTTTAAGTCATTTTAAAGGAAAGTTTAAAATT
CTAAAACAAAGTTTTGATTTTTTTTAACTATTCCAAAGTAAAAGCTTCAATCTTTAAGAAAAATA
ATGTTTTTTTTAAG
Found at i:63966441 original size:25 final size:24
Alignment explanation
Indices: 63966413--63966459 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 24
63966403 TCACTTGCAT
63966413 TTATACA-TTATATATTTAATGTTAA
1 TTATACACTT-TAT-TTTAATGTTAA
*
63966438 TTATGCACTTTATTTTAATGTT
1 TTATACACTTTATTTTAATGTT
63966460 TTATATTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 9 0.45
25 9 0.45
26 2 0.10
ACGTcount: A:0.32, C:0.06, G:0.06, T:0.55
Consensus pattern (24 bp):
TTATACACTTTATTTTAATGTTAA
Found at i:63966507 original size:21 final size:22
Alignment explanation
Indices: 63966483--63966539 Score: 73
Period size: 21 Copynumber: 2.6 Consensus size: 22
63966473 TACTTGTATA
*
63966483 ATTTTTATTTATTCTT-ATTTC-
1 ATTTTTATTTATT-TTCATGTCT
63966504 ATTTTTATTTATTTTCATGTCT
1 ATTTTTATTTATTTTCATGTCT
*
63966526 ATTTATATTTATTT
1 ATTTTTATTTATTT
63966540 ATTTTTACAC
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
20 2 0.06
21 17 0.53
22 13 0.41
ACGTcount: A:0.21, C:0.07, G:0.02, T:0.70
Consensus pattern (22 bp):
ATTTTTATTTATTTTCATGTCT
Found at i:63966546 original size:10 final size:10
Alignment explanation
Indices: 63966483--63966539 Score: 60
Period size: 10 Copynumber: 5.4 Consensus size: 10
63966473 TACTTGTATA
63966483 ATTTTTATTT
1 ATTTTTATTT
*
63966493 ATTCTTATTT
1 ATTTTTATTT
63966503 CATTTTTATTT
1 -ATTTTTATTT
*
63966514 ATTTTCATGTCT
1 ATTTTTAT-T-T
*
63966526 ATTTATATTT
1 ATTTTTATTT
63966536 ATTT
1 ATTT
63966540 ATTTTTACAC
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
10 21 0.54
11 11 0.28
12 7 0.18
ACGTcount: A:0.21, C:0.07, G:0.02, T:0.70
Consensus pattern (10 bp):
ATTTTTATTT
Found at i:63968717 original size:53 final size:53
Alignment explanation
Indices: 63968536--63968790 Score: 236
Period size: 55 Copynumber: 4.8 Consensus size: 53
63968526 ATTAGGGTTT
* *
63968536 AAGGATACCGTGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-G-TTCATAAGGC
* * * * *
63968591 AAGGAAATCATGTAAGACCATGTCAAGACACGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-C-ATAAGGC
* * *
63968646 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
* * *
63968699 AAGGCTACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT--TCAA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCAT-AAGGC
** * * *
63968748 AAGGATACCACATAAGACCATGACAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
63968791 GTACCCGTGT
Statistics
Matches: 169, Mismatches: 25, Indels: 18
0.80 0.12 0.08
Matches are distributed among these distances:
49 38 0.22
51 1 0.01
52 8 0.05
53 44 0.26
54 8 0.05
55 66 0.39
56 4 0.02
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
Found at i:63968742 original size:108 final size:110
Alignment explanation
Indices: 63968546--63968743 Score: 303
Period size: 108 Copynumber: 1.8 Consensus size: 110
63968536 AAGGATACCG
*
63968546 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGACCA
1 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGACCA
*
63968611 TGTCAAGACACGGCATTGATAAGTTACTATAAGGCAAAGGTCCCA
66 TGTCAAGACACGGCAATGATAAGTTACTATAAGGCAAAGGTCCCA
* **
63968656 TGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGCTACCATGTAAGACC
1 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAGACC
* *
63968718 ATGTCAAGACATGGCAATGGTAAGTT
65 ATGTCAAGACACGGCAATGATAAGTT
63968744 TCAAAAGGAT
Statistics
Matches: 80, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
107 3 0.04
108 46 0.57
109 7 0.09
110 24 0.30
ACGTcount: A:0.34, C:0.18, G:0.26, T:0.22
Consensus pattern (110 bp):
TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGACCA
TGTCAAGACACGGCAATGATAAGTTACTATAAGGCAAAGGTCCCA
Found at i:63976761 original size:42 final size:42
Alignment explanation
Indices: 63976697--63977012 Score: 431
Period size: 42 Copynumber: 7.5 Consensus size: 42
63976687 GCATTTAGGC
*
63976697 TCCATTTACTTTTCATTGCATTTAGAGGCCTAGGTGTGGAGG
1 TCCATTTACTTTTCATTGCATTTAGAGGCCCAGGTGTGGAGG
*
63976739 TCCATTTACTTTTCATTACATTTAGAGGCCCAGGTGTGGAGG
1 TCCATTTACTTTTCATTGCATTTAGAGGCCCAGGTGTGGAGG
*
63976781 TCCATTCT-CTCTTCATTGCATTTAGAGGCCCAGGTGTGGAGG
1 TCCATT-TACTTTTCATTGCATTTAGAGGCCCAGGTGTGGAGG
* * *
63976823 TCCATTCT-CTTTTCATTGCATTTAAAGACCCATGTGTGGAGG
1 TCCATT-TACTTTTCATTGCATTTAGAGGCCCAGGTGTGGAGG
* * *
63976865 TCCATTTACTTTTTATTGCATTTAGAGGCCCAAGTGTTGAGG
1 TCCATTTACTTTTCATTGCATTTAGAGGCCCAGGTGTGGAGG
* * * * *
63976907 TCCATTCACTTTTCATTTCATTTAGAGACCTAGGTGTAGAGG
1 TCCATTTACTTTTCATTGCATTTAGAGGCCCAGGTGTGGAGG
*
63976949 T-CATTTGACTTTTCATTGCATTTAGAGACCCAGGTGTGGAGG
1 TCCATTT-ACTTTTCATTGCATTTAGAGGCCCAGGTGTGGAGG
* *
63976991 TCCGTTTACTTTTTATTGCATT
1 TCCATTTACTTTTCATTGCATT
63977013 GACTTTTCAT
Statistics
Matches: 244, Mismatches: 26, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
41 5 0.02
42 234 0.96
43 5 0.02
ACGTcount: A:0.20, C:0.19, G:0.22, T:0.39
Consensus pattern (42 bp):
TCCATTTACTTTTCATTGCATTTAGAGGCCCAGGTGTGGAGG
Found at i:63976922 original size:126 final size:126
Alignment explanation
Indices: 63976697--63977145 Score: 474
Period size: 126 Copynumber: 3.4 Consensus size: 126
63976687 GCATTTAGGC
* * * *
63976697 TCCATTTACTTTTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTTTTCATTACATTT
1 TCCATTTACTTTTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCATTTACTTTTTATTGCATTT
* * * *
63976762 AGAGGCCCAGGTGTGGAGGTCCATTCTCTCTTCATTGCATTTAGAGGCCCAGGTGTGGAGG
66 AGAGGCCCAAGTGTGGAGGTCCATTCACTCTTCATTGCATTTAGAGACCCAGGTGTAGAGG
* *
63976823 TCCATTCT-CTTTTCATTGCATTTAAAGACCCATGTGTGGAGGTCCATTTACTTTTTATTGCATT
1 TCCATT-TACTTTTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCATTTACTTTTTATTGCATT
* * * *
63976887 TAGAGGCCCAAGTGTTGAGGTCCATTCACTTTTCATTTCATTTAGAGACCTAGGTGTAGAGG
65 TAGAGGCCCAAGTGTGGAGGTCCATTCACTCTTCATTGCATTTAGAGACCCAGGTGTAGAGG
63976949 T-CATTTGACTTTTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCGTTTACTTTTTATTGCATT
1 TCCATTT-ACTTTTCATTGCATTTAGAGACCCAGGTGTGGAGGTCC----A---TTTA---C--T
* * * * * * * *
63977013 GACTTTTCATTGCATTTAGAGGCTCAATTTTTGAGGTCCATTCACTTTTTATTTCATTTAGAGAT
53 ---TTTT-ATTGCATTTAGAGGCCCAAGTGTGGAGGTCCATTCACTCTTCATTGCATTTAGAGAC
*
63977078 CCATGTGT-GAAGG
114 CCAGGTGTAG-AGG
*
63977091 T-CATTTGACTTTTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCGTTTACTTTT
1 TCCATTT-ACTTTTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCATTTACTTTT
63977146 CTAGTTTACT
Statistics
Matches: 279, Mismatches: 24, Indels: 39
0.82 0.07 0.11
Matches are distributed among these distances:
124 1 0.00
125 4 0.01
126 146 0.52
127 4 0.01
130 2 0.01
132 1 0.00
133 4 0.01
135 4 0.01
136 1 0.00
138 1 0.00
141 5 0.02
142 106 0.38
ACGTcount: A:0.20, C:0.18, G:0.22, T:0.40
Consensus pattern (126 bp):
TCCATTTACTTTTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCATTTACTTTTTATTGCATTT
AGAGGCCCAAGTGTGGAGGTCCATTCACTCTTCATTGCATTTAGAGACCCAGGTGTAGAGG
Found at i:63977019 original size:16 final size:16
Alignment explanation
Indices: 63976998--63977028 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
63976988 AGGTCCGTTT
*
63976998 ACTTTTTATTGCATTG
1 ACTTTTCATTGCATTG
63977014 ACTTTTCATTGCATT
1 ACTTTTCATTGCATT
63977029 TAGAGGCTCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.16, G:0.10, T:0.55
Consensus pattern (16 bp):
ACTTTTCATTGCATTG
Found at i:63977049 original size:58 final size:58
Alignment explanation
Indices: 63976953--63977070 Score: 155
Period size: 58 Copynumber: 2.0 Consensus size: 58
63976943 TAGAGGTCAT
* * *
63976953 TTGACTTTTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCGTTTACTTTTTATTGCA
1 TTGACTTTTCATTGCATTTAGAGACCCAAGTGTGGAGGTCCATTCACTTTTTATTGCA
* * * * * *
63977011 TTGACTTTTCATTGCATTTAGAGGCTCAATTTTTGAGGTCCATTCACTTTTTATTTCA
1 TTGACTTTTCATTGCATTTAGAGACCCAAGTGTGGAGGTCCATTCACTTTTTATTGCA
63977069 TT
1 TT
63977071 TAGAGATCCA
Statistics
Matches: 51, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
58 51 1.00
ACGTcount: A:0.19, C:0.17, G:0.18, T:0.46
Consensus pattern (58 bp):
TTGACTTTTCATTGCATTTAGAGACCCAAGTGTGGAGGTCCATTCACTTTTTATTGCA
Found at i:63977128 original size:142 final size:142
Alignment explanation
Indices: 63976867--63977145 Score: 463
Period size: 142 Copynumber: 2.0 Consensus size: 142
63976857 TGTGGAGGTC
* *
63976867 CATTTACTTTTTATTGCATTTAGAGGCCCAAGTGTTGAGGTCCATTCACTTTTCATTTCATTTAG
1 CATTGACTTTTCATTGCATTTAGAGGCCCAAGTGTTGAGGTCCATTCACTTTTCATTTCATTTAG
63976932 AGACCTAGGTGTAGAGGTCATTTGACTTTTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCGTT
66 AGACCTAGGTGTAGAGGTCATTTGACTTTTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCGTT
63976997 TACTTTTTATTG
131 TACTTTTTATTG
* * * *
63977009 CATTGACTTTTCATTGCATTTAGAGGCTCAATTTTTGAGGTCCATTCACTTTTTATTTCATTTAG
1 CATTGACTTTTCATTGCATTTAGAGGCCCAAGTGTTGAGGTCCATTCACTTTTCATTTCATTTAG
*
63977074 AGATCC-ATGTGT-GAAGGTCATTTGACTTTTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCG
66 AGA-CCTAGGTGTAG-AGGTCATTTGACTTTTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCG
63977137 TTTACTTTT
129 TTTACTTTT
63977146 CTAGTTTACT
Statistics
Matches: 128, Mismatches: 7, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
141 1 0.01
142 125 0.98
143 2 0.02
ACGTcount: A:0.21, C:0.17, G:0.20, T:0.42
Consensus pattern (142 bp):
CATTGACTTTTCATTGCATTTAGAGGCCCAAGTGTTGAGGTCCATTCACTTTTCATTTCATTTAG
AGACCTAGGTGTAGAGGTCATTTGACTTTTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCGTT
TACTTTTTATTG
Found at i:63977144 original size:42 final size:42
Alignment explanation
Indices: 63977009--63977146 Score: 134
Period size: 42 Copynumber: 3.3 Consensus size: 42
63976999 CTTTTTATTG
* * * * * *
63977009 CATTGACTTTTCATTGCATTTAGAGGCTCAATTTTTGAGGTC
1 CATTTACTTTTCATTGCATTTAGAGACCCAAGTGTGGAGGTC
* * * * * *
63977051 CATTCACTTTTTATTTCATTTAGAGATCCATGTGTGAAGGT-
1 CATTTACTTTTCATTGCATTTAGAGACCCAAGTGTGGAGGTC
*
63977092 CATTTGACTTTTCATTGCATTTAGAGACCCAGGTGTGGAGGTC
1 CATTT-ACTTTTCATTGCATTTAGAGACCCAAGTGTGGAGGTC
*
63977135 CGTTTACTTTTC
1 CATTTACTTTTC
63977147 TAGTTTACTT
Statistics
Matches: 76, Mismatches: 18, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
41 4 0.05
42 68 0.89
43 4 0.05
ACGTcount: A:0.21, C:0.17, G:0.20, T:0.42
Consensus pattern (42 bp):
CATTTACTTTTCATTGCATTTAGAGACCCAAGTGTGGAGGTC
Found at i:63977174 original size:16 final size:16
Alignment explanation
Indices: 63977153--63977183 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
63977143 TTTCTAGTTT
63977153 ACTTTTCATTACATTG
1 ACTTTTCATTACATTG
63977169 ACTTTTCATTACATT
1 ACTTTTCATTACATT
63977184 TAGGGGCCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.26, C:0.19, G:0.03, T:0.52
Consensus pattern (16 bp):
ACTTTTCATTACATTG
Found at i:63980220 original size:22 final size:22
Alignment explanation
Indices: 63980123--63980221 Score: 162
Period size: 22 Copynumber: 4.5 Consensus size: 22
63980113 ATGTTAAAAG
* *
63980123 CACACGGGCATGTCCCCGGTCT
1 CACACGGGCGTGTCCCCAGTCT
*
63980145 CACACGGGCATGTCCCCAGTCT
1 CACACGGGCGTGTCCCCAGTCT
63980167 CACACGGGCGTGTCCCCAGTCT
1 CACACGGGCGTGTCCCCAGTCT
*
63980189 CACACGGGCGTGTCCCCGGTCT
1 CACACGGGCGTGTCCCCAGTCT
63980211 CACACGGGCGT
1 CACACGGGCGT
63980222 CTGATTTAGT
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 74 1.00
ACGTcount: A:0.14, C:0.40, G:0.28, T:0.17
Consensus pattern (22 bp):
CACACGGGCGTGTCCCCAGTCT
Found at i:63981089 original size:157 final size:152
Alignment explanation
Indices: 63980823--63981214 Score: 470
Period size: 157 Copynumber: 2.6 Consensus size: 152
63980813 AAAGTTTTGA
* * *
63980823 TTTTTTTTAAAAAACA-GAGAAAGTTTAGATTTT-AACAAATAAAAATATGTTTTTTATAGTTAC
1 TTTTTTTTAAAAAAAAGGAGAAAGTTTAGATTTTGAA-AAATAAAAATATGTTTTTT-TAGTCAT
* * * *
63980886 TTTAAAGGAAAGTTTAAAATTTTAAAATAAAGTTTTAATTTTTTTCAACCATTTCAAAGTAAAAG
64 TTTAAAGGAAAGTTTAAAATTTTAAAACAAAATTTTAATTGTTTTCAACCATTTCAAAATAAAAG
* *
63980951 CTTTAATCTTTAAGAAAAATAGAGTT
129 CTTTAATCATTAAGAAAAAT--AGTG
* *
63980977 TTTTTTTTAAAAAAAAAAAGGAGAAAGTTTAGATTTTGAAAAATAAAATTTTGTTTTTTTAGTCA
1 TTTTTTTT---AAAAAAAAGGAGAAAGTTTAGATTTTGAAAAATAAAAATATGTTTTTTTAGTCA
* * * *
63981042 TTTTAAAGGAAAGTTTTAACTTTTAAAACAAAATTTTGATTGTTTTCAACTATTTCAAAATAAAA
63 TTTTAAAGGAAAGTTTAAAATTTTAAAACAAAATTTTAATTGTTTTCAACCATTTCAAAATAAAA
*
63981107 GTTTTAATCATTAAGAAAAATAGTG
128 GCTTTAATCATTAAGAAAAATAGTG
* * * * *
63981132 TTTTTTTT---AAAAGGGAGAAAGTTTAGATTTTGAAAAATAAAAATCTATTTTTTAAGTCATTC
1 TTTTTTTTAAAAAAAAGGAGAAAGTTTAGATTTTGAAAAATAAAAATATGTTTTTTTAGTCATTT
* * *
63981194 TAAAAGAAAATTTAAATTTTT
66 TAAAGGAAAGTTTAAAATTTT
63981215 TTTAACTATT
Statistics
Matches: 207, Mismatches: 26, Indels: 15
0.83 0.10 0.06
Matches are distributed among these distances:
149 65 0.31
154 8 0.04
155 11 0.05
157 87 0.42
158 34 0.16
159 2 0.01
ACGTcount: A:0.43, C:0.05, G:0.10, T:0.42
Consensus pattern (152 bp):
TTTTTTTTAAAAAAAAGGAGAAAGTTTAGATTTTGAAAAATAAAAATATGTTTTTTTAGTCATTT
TAAAGGAAAGTTTAAAATTTTAAAACAAAATTTTAATTGTTTTCAACCATTTCAAAATAAAAGCT
TTAATCATTAAGAAAAATAGTG
Found at i:63981864 original size:10 final size:10
Alignment explanation
Indices: 63981830--63981865 Score: 54
Period size: 10 Copynumber: 3.5 Consensus size: 10
63981820 CACTTGTATA
63981830 ATTTTTATTT
1 ATTTTTATTT
*
63981840 ATTCTTATTT
1 ATTTTTATTT
63981850 CATTTTTATTT
1 -ATTTTTATTT
63981861 ATTTT
1 ATTTT
63981866 CATGTCTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
10 14 0.61
11 9 0.39
ACGTcount: A:0.19, C:0.06, G:0.00, T:0.75
Consensus pattern (10 bp):
ATTTTTATTT
Found at i:63981877 original size:21 final size:21
Alignment explanation
Indices: 63981830--63981883 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 21
63981820 CACTTGTATA
*
63981830 ATTTTTATTTATTCTTATTTC
1 ATTTTTATTTATTCTTATGTC
63981851 ATTTTTATTTATT-TTCATGTC
1 ATTTTTATTTATTCTT-ATGTC
*
63981872 TATTTTTTTTTA
1 -ATTTTTATTTA
63981884 CACAATCCAC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
20 2 0.07
21 17 0.59
22 10 0.34
ACGTcount: A:0.19, C:0.07, G:0.02, T:0.72
Consensus pattern (21 bp):
ATTTTTATTTATTCTTATGTC
Found at i:63984828 original size:664 final size:663
Alignment explanation
Indices: 63983471--63984799 Score: 2599
Period size: 664 Copynumber: 2.0 Consensus size: 663
63983461 GTCAACTTGA
63983471 ATAAAAATATATCTTTTAATAGTTTTTTTTTACAAGATTCATTTCTTATTTGATTTTTTTTAAGA
1 ATAAAAATATATCTTTTAATAG-TTTTTTTTACAAGATTCATTTCTTATTTGATTTTTTTTAAGA
63983536 CTAGCAACAACATAACTTATTATTTGTGGTGTTTGTAAGTTCTTCACACCCTGGGTTGCTAAGGT
65 CTAGCAACAACATAACTTATTATTTGTGGTGTTTGTAAGTTCTTCACACCCTGGGTTGCTAAGGT
63983601 TTCTACCTTAGAAAGTCGATTCCAGTCTTGTGATTTTCTTTGTTGGTTCTTTTAGAACCAAAGGG
130 TTCTACCTTAGAAAGTCGATTCCAGTCTTGTGATTTTCTTTGTTGGTTCTTTTAGAACCAAAGGG
63983666 GGCATAAGAACATCTATTCATCTTTCATCTATTGTTTTCATCTAACTTAAAATTGTTGTCTATTC
195 GGCATAAGAACATCTATTCATCTTTCATCTATTGTTTTCATCTAACTTAAAATTGTTGTCTATTC
63983731 TTGTTCAATTCTTTTTTATTATATATTTGTAATAAGGATTGATTTTGAAATGTTTCTTTTTAATT
260 TTGTTCAATTCTTTTTTATTATATATTTGTAATAAGGATTGATTTTGAAATGTTTCTTTTTAATT
63983796 TCATAAATTTCCCATTCTAGACTTCCAATTTGCATTTTTAATTTCATATATTTAGAAGTTATTCC
325 TCATAAATTTCCCATTCTAGACTTCCAATTTGCATTTTTAATTTCATATATTTAGAAGTTATTCC
*
63983861 ATTCTAATTTAAAAAAAAACCATTCAATATCAACAAATTTAACATTAAATATTCGTTTGGTTTGG
390 ATTCTAATTTAAAAAAAAACCATTCAATATCAACAAATTTAACATTAAATATTCGTTTGATTTGG
63983926 TTAATCTGAGAGTCCACATCACCTTTATATTGCGCAACTCCATATCAATTATAAACAACCTATCT
455 TTAATCTGAGAGTCCACATCACCTTTATATTGCGCAACTCCATATCAATTATAAACAACCTATCT
63983991 TGCATTGGATATAAAACATAGTTAGTATAGAACACATCGAAGCTATATTGCAAAAATATATATAT
520 TGCATTGGATATAAAACATAGTTAGTATAGAACACATCGAAGCTATATTGC-AAAATATATATAT
63984056 ATAAAAATGAGGATTCATTACTTTTTTTTTCTCAACTTTATTTCAATCATCATATTTCTATATTT
584 ATAAAAATGAGGATTCATTACTTTTTTTTTCTCAACTTTATTTCAATCATCATATTTCTATATTT
63984121 CCCCACACAAATCAC
649 CCCCACACAAATCAC
63984136 ATAAAAATATATCTTTTAATAGTTTTTTTTACAAGATTCATTTCTTATTTGATTTTTTTTAAGAC
1 ATAAAAATATATCTTTTAATAGTTTTTTTTACAAGATTCATTTCTTATTTGATTTTTTTTAAGAC
*
63984201 TAGCAACAACATAACTTATTGTTTGTGGTGTTTGTAAGTTCTTCACACCCTGGGTTGCTAAGGTT
66 TAGCAACAACATAACTTATTATTTGTGGTGTTTGTAAGTTCTTCACACCCTGGGTTGCTAAGGTT
63984266 TCTACCTTAGAAAGTCGATTCCAGTCTTGTGATTTTCTTTGTTGGTTCTTTTAGAACCAAAGGGG
131 TCTACCTTAGAAAGTCGATTCCAGTCTTGTGATTTTCTTTGTTGGTTCTTTTAGAACCAAAGGGG
*
63984331 GCATAAGAACATCTATTCATCTTTCATCTATTGTTTTCATCTAACTTAAAATTGTTTTCTATTCT
196 GCATAAGAACATCTATTCATCTTTCATCTATTGTTTTCATCTAACTTAAAATTGTTGTCTATTCT
63984396 TGTTCAATTCTTTTTTATTATATATTTGTAATAAGGATTGATTTTGAAATGTTTCTTTTTAATTT
261 TGTTCAATTCTTTTTTATTATATATTTGTAATAAGGATTGATTTTGAAATGTTTCTTTTTAATTT
63984461 CATAAATTTCCCATTCTAGACTTCCAATTTGCATTTTTAATTTCATATATTTAGAAGTTATTCCA
326 CATAAATTTCCCATTCTAGACTTCCAATTTGCATTTTTAATTTCATATATTTAGAAGTTATTCCA
63984526 TTCTAATTTAAAAAAAAACCATTCAATATCAACAAATTTAACATTAAATATTCGTTTGATTTGGT
391 TTCTAATTTAAAAAAAAACCATTCAATATCAACAAATTTAACATTAAATATTCGTTTGATTTGGT
63984591 TAATCTGAGAGTCCACATCACCTTTATATTGCGCAACTCCATATCAATTATAAACAACCTATCTT
456 TAATCTGAGAGTCCACATCACCTTTATATTGCGCAACTCCATATCAATTATAAACAACCTATCTT
63984656 GCATTGGATATAAAACATAGTTAGTATAGAACACATCGAAGCTATATTGC-AAATATATATATAT
521 GCATTGGATATAAAACATAGTTAGTATAGAACACATCGAAGCTATATTGCAAAATATATATATAT
63984720 -AAAATGAGGATTCATTACTTTTTTTTTCTCAACTTTATTTCAATCATCATATTTCTATATTTCC
586 AAAAATGAGGATTCATTACTTTTTTTTTCTCAACTTTATTTCAATCATCATATTTCTATATTTCC
63984784 CCACACAAATCAC
651 CCACACAAATCAC
63984797 ATA
1 ATA
63984800 TATGTATTTA
Statistics
Matches: 661, Mismatches: 3, Indels: 4
0.99 0.00 0.01
Matches are distributed among these distances:
661 80 0.12
662 14 0.02
664 545 0.82
665 22 0.03
ACGTcount: A:0.32, C:0.16, G:0.10, T:0.43
Consensus pattern (663 bp):
ATAAAAATATATCTTTTAATAGTTTTTTTTACAAGATTCATTTCTTATTTGATTTTTTTTAAGAC
TAGCAACAACATAACTTATTATTTGTGGTGTTTGTAAGTTCTTCACACCCTGGGTTGCTAAGGTT
TCTACCTTAGAAAGTCGATTCCAGTCTTGTGATTTTCTTTGTTGGTTCTTTTAGAACCAAAGGGG
GCATAAGAACATCTATTCATCTTTCATCTATTGTTTTCATCTAACTTAAAATTGTTGTCTATTCT
TGTTCAATTCTTTTTTATTATATATTTGTAATAAGGATTGATTTTGAAATGTTTCTTTTTAATTT
CATAAATTTCCCATTCTAGACTTCCAATTTGCATTTTTAATTTCATATATTTAGAAGTTATTCCA
TTCTAATTTAAAAAAAAACCATTCAATATCAACAAATTTAACATTAAATATTCGTTTGATTTGGT
TAATCTGAGAGTCCACATCACCTTTATATTGCGCAACTCCATATCAATTATAAACAACCTATCTT
GCATTGGATATAAAACATAGTTAGTATAGAACACATCGAAGCTATATTGCAAAATATATATATAT
AAAAATGAGGATTCATTACTTTTTTTTTCTCAACTTTATTTCAATCATCATATTTCTATATTTCC
CCACACAAATCAC
Found at i:63986269 original size:21 final size:21
Alignment explanation
Indices: 63986243--63986287 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
63986233 CTTAACATGT
*
63986243 AAATGCCTCTAAAATATTAAC
1 AAATGCCTCTAAAATAATAAC
*
63986264 AAATGCCTTTAAAATAATAAC
1 AAATGCCTCTAAAATAATAAC
63986285 AAA
1 AAA
63986288 ATTAACAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.53, C:0.16, G:0.04, T:0.27
Consensus pattern (21 bp):
AAATGCCTCTAAAATAATAAC
Done.