Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 186 of 295
Found at i:63986968 original size:23 final size:23
Alignment explanation
Indices: 63986942--63986985 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
63986932 TGGGTTTAGG
*
63986942 GTTATGAAACTTTTTGTATTTAA
1 GTTATAAAACTTTTTGTATTTAA
63986965 GTTATAAAACTTTTTGTATTT
1 GTTATAAAACTTTTTGTATTT
63986986 GCATAACTAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.30, C:0.05, G:0.11, T:0.55
Consensus pattern (23 bp):
GTTATAAAACTTTTTGTATTTAA
Found at i:63987912 original size:20 final size:20
Alignment explanation
Indices: 63987867--63987913 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
63987857 ACATAATTAT
63987867 TTTTTATAATATATTTTTAG
1 TTTTTATAATATATTTTTAG
**
63987887 GATTTATAATATGATTTTTA-
1 TTTTTATAATAT-ATTTTTAG
63987907 TTTTTAT
1 TTTTTAT
63987914 TTTGTCATAA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 15 0.68
21 7 0.32
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.64
Consensus pattern (20 bp):
TTTTTATAATATATTTTTAG
Found at i:63992644 original size:23 final size:21
Alignment explanation
Indices: 63992601--63992651 Score: 68
Period size: 23 Copynumber: 2.4 Consensus size: 21
63992591 CCAATACTTG
63992601 CAAACA-TATACCAACCAATT
1 CAAACATTATACCAACCAATT
63992621 CAAACATTATAACCAAGCCAATT
1 CAAACATTAT-ACCAA-CCAATT
*
63992644 CTAACATT
1 CAAACATT
63992652 TTACATGATA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 6 0.22
21 3 0.11
22 5 0.19
23 13 0.48
ACGTcount: A:0.47, C:0.27, G:0.02, T:0.24
Consensus pattern (21 bp):
CAAACATTATACCAACCAATT
Found at i:63993041 original size:16 final size:16
Alignment explanation
Indices: 63993020--63993051 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
63993010 AGTAAGTTCG
63993020 TATAATAAGAATTAAA
1 TATAATAAGAATTAAA
63993036 TATAATAAGAATTAAA
1 TATAATAAGAATTAAA
63993052 CTTACCAAGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.31
Consensus pattern (16 bp):
TATAATAAGAATTAAA
Found at i:63995619 original size:43 final size:41
Alignment explanation
Indices: 63995505--63995628 Score: 142
Period size: 42 Copynumber: 3.0 Consensus size: 41
63995495 AGGTTATCGA
*
63995505 GATA-TGATTACATGTAAGACCATGTCTGGGACATTGGCATC
1 GATATTGATTACATGTAAGACCATGTCTGGGATA-TGGCATC
* * * * *
63995546 GCTATCGATTTCGTGTAAGACCCTGTCTGGGATAGTGGCATC
1 GATATTGATTACATGTAAGACCATGTCTGGGATA-TGGCATC
* *
63995588 GATATGTGATAACATGTAAGACCATATCTGGGATATGGCAT
1 GATAT-TGATTACATGTAAGACCATGTCTGGGATATGGCAT
63995629 TGTACGAGCT
Statistics
Matches: 67, Mismatches: 14, Indels: 3
0.80 0.17 0.04
Matches are distributed among these distances:
41 3 0.04
42 41 0.61
43 23 0.34
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (41 bp):
GATATTGATTACATGTAAGACCATGTCTGGGATATGGCATC
Found at i:63996879 original size:108 final size:108
Alignment explanation
Indices: 63996736--63996956 Score: 325
Period size: 108 Copynumber: 2.0 Consensus size: 108
63996726 CACACGGGTG
* * *
63996736 TGTCTACTGGCCGTGTGTAGCACACGGGCTGGCACATGGGCGTGTGGTCGGCCTTGTGACCCAAG
1 TGTCTACTGGCCGTGTGTAGCACACGGGCTGGCACATGGGCGTGCGATCGGCCGTGTGACCCAAG
* * *
63996801 TCAGTAACCTCCCCAGTTTTCCCACGGCCATGGCACATAGGCA
66 TCAGTAACCTCACCAGTTTTCCCACGACCATGGCACACAGGCA
* * * * *
63996844 TGTCTACTGGTCGTGTGTGGCACACGGGCTGGCACATGGGTGTGCGATTGTCCGTGTGACCCAAG
1 TGTCTACTGGCCGTGTGTAGCACACGGGCTGGCACATGGGCGTGCGATCGGCCGTGTGACCCAAG
* *
63996909 TCAGTAACCTCATCAGTTTTCCCACGACCATGGCACACGGGCA
66 TCAGTAACCTCACCAGTTTTCCCACGACCATGGCACACAGGCA
63996952 TGTCT
1 TGTCT
63996957 TCGACCGTGT
Statistics
Matches: 100, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
108 100 1.00
ACGTcount: A:0.18, C:0.29, G:0.29, T:0.24
Consensus pattern (108 bp):
TGTCTACTGGCCGTGTGTAGCACACGGGCTGGCACATGGGCGTGCGATCGGCCGTGTGACCCAAG
TCAGTAACCTCACCAGTTTTCCCACGACCATGGCACACAGGCA
Found at i:64000871 original size:60 final size:60
Alignment explanation
Indices: 64000773--64000900 Score: 238
Period size: 60 Copynumber: 2.1 Consensus size: 60
64000763 ACTATTACAA
*
64000773 ATTTGCCTAAGTAAGTTTGTGTTTATTTTTATATAAGAATGTTATAATTTATTTCATTTC
1 ATTTTCCTAAGTAAGTTTGTGTTTATTTTTATATAAGAATGTTATAATTTATTTCATTTC
*
64000833 ATTTTCCTAAGTAAGTTTGTTTTTATTTTTATATAAGAATGTTATAATTTATTTCATTTC
1 ATTTTCCTAAGTAAGTTTGTGTTTATTTTTATATAAGAATGTTATAATTTATTTCATTTC
64000893 ATTTTCCT
1 ATTTTCCT
64000901 TACAAGTGAT
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 66 1.00
ACGTcount: A:0.27, C:0.08, G:0.09, T:0.55
Consensus pattern (60 bp):
ATTTTCCTAAGTAAGTTTGTGTTTATTTTTATATAAGAATGTTATAATTTATTTCATTTC
Found at i:64001036 original size:38 final size:38
Alignment explanation
Indices: 64000994--64001168 Score: 233
Period size: 38 Copynumber: 4.6 Consensus size: 38
64000984 TGATTCAAGT
* *
64000994 TTAGTGCCTAGCAGGCTTAGTGCTGGTGTTATTTAGGC
1 TTAGTGCCTAGCAGGCTTAGTGCCGGTGTTATTCAGGC
* *
64001032 TTAGTGCCTAGCAGGCTTAATGCCGGTATTATTCAGGC
1 TTAGTGCCTAGCAGGCTTAGTGCCGGTGTTATTCAGGC
*
64001070 TTAGTGCCTAGTAGGCTTAGTGCCGGTGTTATTCAGGC
1 TTAGTGCCTAGCAGGCTTAGTGCCGGTGTTATTCAGGC
* * * ** *
64001108 TTAGTGCCTAGTAGACTTTGTGCCAATGTTAATCAGGC
1 TTAGTGCCTAGCAGGCTTAGTGCCGGTGTTATTCAGGC
* *
64001146 ATAGTGCCTAGCAGGCTTTGTGC
1 TTAGTGCCTAGCAGGCTTAGTGC
64001169 TAGTGTAGTA
Statistics
Matches: 122, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 122 1.00
ACGTcount: A:0.19, C:0.19, G:0.29, T:0.34
Consensus pattern (38 bp):
TTAGTGCCTAGCAGGCTTAGTGCCGGTGTTATTCAGGC
Found at i:64001047 original size:16 final size:16
Alignment explanation
Indices: 64001028--64001093 Score: 51
Period size: 16 Copynumber: 3.8 Consensus size: 16
64001018 GGTGTTATTT
64001028 AGGCTTAGTGCCTAGC
1 AGGCTTAGTGCCTAGC
* *
64001044 AGGCTTAATGCCGGTATTATTC
1 AGGCTTAGTGCC-----TA-GC
*
64001066 AGGCTTAGTGCCTAGT
1 AGGCTTAGTGCCTAGC
64001082 AGGCTTAGTGCC
1 AGGCTTAGTGCC
64001094 GGTGTTATTC
Statistics
Matches: 39, Mismatches: 5, Indels: 12
0.70 0.09 0.21
Matches are distributed among these distances:
16 23 0.59
17 2 0.05
21 2 0.05
22 12 0.31
ACGTcount: A:0.20, C:0.21, G:0.29, T:0.30
Consensus pattern (16 bp):
AGGCTTAGTGCCTAGC
Found at i:64001086 original size:76 final size:76
Alignment explanation
Indices: 64000980--64001174 Score: 237
Period size: 76 Copynumber: 2.6 Consensus size: 76
64000970 CGTATTGAAT
* * *
64000980 GTATTGATTCAAGTTTAGTGCCTAGCAGGCTTAGTGCTGGTGTTATTTAGGCTTAGTGCCTAGCA
1 GTATT-ATTCAGGCTTAGTGCCTAGCAGGCTTAGTGCTGGTGTTATTCAGGCTTAGTGCCTAGCA
* *
64001045 GGCTTAATGCCG
65 GACTTAATGCCA
* * *
64001057 GTATTATTCAGGCTTAGTGCCTAGTAGGCTTAGTGCCGGTGTTATTCAGGCTTAGTGCCTAGTAG
1 GTATTATTCAGGCTTAGTGCCTAGCAGGCTTAGTGCTGGTGTTATTCAGGCTTAGTGCCTAGCAG
**
64001122 ACTTTGTGCCA
66 ACTTAATGCCA
* * * * * *
64001133 ATGTTAATCAGGCATAGTGCCTAGCAGGCTTTGTGCTAGTGT
1 GTATTATTCAGGCTTAGTGCCTAGCAGGCTTAGTGCTGGTGT
64001175 AGTAAATGTT
Statistics
Matches: 100, Mismatches: 18, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
76 95 0.95
77 5 0.05
ACGTcount: A:0.19, C:0.17, G:0.28, T:0.35
Consensus pattern (76 bp):
GTATTATTCAGGCTTAGTGCCTAGCAGGCTTAGTGCTGGTGTTATTCAGGCTTAGTGCCTAGCAG
ACTTAATGCCA
Found at i:64001110 original size:22 final size:21
Alignment explanation
Indices: 64001005--64001115 Score: 80
Period size: 22 Copynumber: 5.6 Consensus size: 21
64000995 TAGTGCCTAG
*
64001005 CAGGCTTAGTGCTGGTGTTATT
1 CAGGCTTAGTGCCGGT-TTATT
* *
64001027 TAGGCTTAGTGCC----TA-G
1 CAGGCTTAGTGCCGGTTTATT
*
64001043 CAGGCTTAATGCCGGTATTATT
1 CAGGCTTAGTGCCGGT-TTATT
*
64001065 CAGGCTTAGTGCC----TAGT
1 CAGGCTTAGTGCCGGTTTATT
64001082 -AGGCTTAGTGCCGGTGTTATT
1 CAGGCTTAGTGCCGGT-TTATT
64001103 CAGGCTTAGTGCC
1 CAGGCTTAGTGCC
64001116 TAGTAGACTT
Statistics
Matches: 68, Mismatches: 9, Indels: 24
0.67 0.09 0.24
Matches are distributed among these distances:
16 23 0.34
17 5 0.07
21 5 0.07
22 35 0.51
ACGTcount: A:0.17, C:0.19, G:0.30, T:0.34
Consensus pattern (21 bp):
CAGGCTTAGTGCCGGTTTATT
Found at i:64003384 original size:16 final size:15
Alignment explanation
Indices: 64003350--64003388 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 15
64003340 TTGAATTGAG
64003350 ATTTATTTTTTAAAT
1 ATTTATTTTTTAAAT
64003365 ATTTTATTTTTT-AAT
1 A-TTTATTTTTTAAAT
64003380 GATTTATTT
1 -ATTTATTT
64003389 GATCTAACTA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 11 0.50
16 11 0.50
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (15 bp):
ATTTATTTTTTAAAT
Found at i:64004763 original size:16 final size:18
Alignment explanation
Indices: 64004737--64004769 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
64004727 GACTGAGGTA
64004737 AATTGTTTTTTT-TCTTT
1 AATTGTTTTTTTATCTTT
64004754 AATT-TTTTTTTATCTT
1 AATTGTTTTTTTATCTT
64004770 GGATTATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.15, C:0.06, G:0.03, T:0.76
Consensus pattern (18 bp):
AATTGTTTTTTTATCTTT
Found at i:64005626 original size:18 final size:18
Alignment explanation
Indices: 64005605--64005652 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
64005595 TTAAAGAAAT
*
64005605 ATCAAAACCTTGAACAAA
1 ATCAAAACCTTGAAAAAA
**
64005623 ATC-AAATGTGTGAAAAAA
1 ATCAAAACCT-TGAAAAAA
64005641 ATCAAAACCTTG
1 ATCAAAACCTTG
64005653 TACTGATCAT
Statistics
Matches: 23, Mismatches: 5, Indels: 4
0.72 0.16 0.12
Matches are distributed among these distances:
17 4 0.17
18 15 0.65
19 4 0.17
ACGTcount: A:0.52, C:0.17, G:0.10, T:0.21
Consensus pattern (18 bp):
ATCAAAACCTTGAAAAAA
Found at i:64014068 original size:22 final size:22
Alignment explanation
Indices: 64014043--64014096 Score: 99
Period size: 22 Copynumber: 2.5 Consensus size: 22
64014033 GATATGTTGC
64014043 TCGACTTATGAAGGTTTTTTAG
1 TCGACTTATGAAGGTTTTTTAG
64014065 TCGACTTATGAAGGTTTTTTAG
1 TCGACTTATGAAGGTTTTTTAG
*
64014087 TTGACTTATG
1 TCGACTTATG
64014097 TAGAGTTATT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.22, C:0.09, G:0.22, T:0.46
Consensus pattern (22 bp):
TCGACTTATGAAGGTTTTTTAG
Found at i:64018968 original size:270 final size:270
Alignment explanation
Indices: 64018487--64019001 Score: 888
Period size: 270 Copynumber: 1.9 Consensus size: 270
64018477 GTGCCCTTGA
* *
64018487 CAACTCTGCTTGTAATCTTTGGTTGCATGCATTTGTTTCTCTTAGCTTGTTTAAGGCAGTTGTAT
1 CAACTCTGCTTGTAATCCTTGGTTGCATGCATTTGTTTCTCTTAGCATGTTTAAGGCAGTTGTAT
* *
64018552 GCACCATTGGGGGATGCTAGAGTAAAATTTACTTTTCAAGAATTGGATTTTAGACAGGTAGAACA
66 GCACCATTGGGGGATGCTAGAGTAAAATTTACTTTTCAAGAATTGGATTTTAAACAAGTAGAACA
* *
64018617 CGACCAGCATGCTAAATTTTCCAGTTAGTGAAGTTTGTTTTTGTTAATGTATTAGAGCATTATTA
131 CAACCAGCATGCTAAATTTTCCAGTTACTGAAGTTTGTTTTTGTTAATGTATTAGAGCATTATTA
* *
64018682 TGCTTGGAGGATGTATCTGTAAATCATGCTTGACAAAGTTTTTGGAAGCAGTTCATTTATTTATG
196 TGCTGGGAGGATGTATCTATAAATCATGCTTGACAAAGTTTTTGGAAGCAGTTCATTTATTTATG
64018747 TATTTGGAAG
261 TATTTGGAAG
*
64018757 CAACTCTGCTTGTAATCCTTGGTTGCATGCATTTGTTTCTCTTAGCATGTTTAAGGCAGTTTTAT
1 CAACTCTGCTTGTAATCCTTGGTTGCATGCATTTGTTTCTCTTAGCATGTTTAAGGCAGTTGTAT
*
64018822 GCACCATTGGGGGATGCTAGAGTAAAATTTAC-TTTCGAGAATTGGATTTTAAACAAGTAGAACA
66 GCACCATTGGGGGATGCTAGAGTAAAATTTACTTTTCAAGAATTGGATTTTAAACAAGTAGAACA
* * *
64018886 CAACGAGCATGCTAAATTTTTCCAGTTACTGAAGTTTTTTTTTGTTAATGTATTAGAGCATTTTT
131 CAACCAGCATGCTAAA-TTTTCCAGTTACTGAAGTTTGTTTTTGTTAATGTATTAGAGCATTATT
*
64018951 ATGCTGGGAGGATGTATCTATAAATCATGCTTGACAACGTTTTTGGAAGCA
195 ATGCTGGGAGGATGTATCTATAAATCATGCTTGACAAAGTTTTTGGAAGCA
64019002 TATATTAGCT
Statistics
Matches: 230, Mismatches: 14, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
269 43 0.19
270 187 0.81
ACGTcount: A:0.27, C:0.13, G:0.21, T:0.39
Consensus pattern (270 bp):
CAACTCTGCTTGTAATCCTTGGTTGCATGCATTTGTTTCTCTTAGCATGTTTAAGGCAGTTGTAT
GCACCATTGGGGGATGCTAGAGTAAAATTTACTTTTCAAGAATTGGATTTTAAACAAGTAGAACA
CAACCAGCATGCTAAATTTTCCAGTTACTGAAGTTTGTTTTTGTTAATGTATTAGAGCATTATTA
TGCTGGGAGGATGTATCTATAAATCATGCTTGACAAAGTTTTTGGAAGCAGTTCATTTATTTATG
TATTTGGAAG
Found at i:64021255 original size:532 final size:524
Alignment explanation
Indices: 64020412--64021470 Score: 1920
Period size: 532 Copynumber: 2.0 Consensus size: 524
64020402 CCAAATGCAT
64020412 CCTTAAATAATAATGAATTTGACTGAAGGAAATAGTTGTAAATAATTTTTTTTTGATCAAGCTGA
1 CCTTAAATAATAATGAATTTGACTGAAGGAAATAGTTGTAAATAATTTTTTTTTGATCAAGCTGA
* * *
64020477 AATTTTTAAGTTTATGAGATATTTTATCTACACGTTTAAATCTGAAGCATATTGGTTTCCTACTT
66 AATTTTTAAGTTTATGAGATATTTTATCTACACCTTTAAATCTAAAGCATATTGGTTTCATACTT
*
64020542 TTATATTCTCTTTAGCTGACTGTTAGTTCTGAAATTTTGAGCAAAAGACAATTCAGAGCTGGGCT
131 TTATATTCTCTTTAGCTGACTGTTAGTTCTGAAACTTTGAGCAAAAGACAATTCAGAGCTGGGCT
64020607 GGTCTAAGACATAAACTTTTATTAAATTAGTTAATTAGAATGAAATTTGGGCCCAAATATGTGTT
196 GGTCTAAGACATAAACTTTTATTAAATTAGTTAATTAGAATGAAATTTGGGCCCAAATATGTGTT
*
64020672 CCTTTCTGAAACTCAAGTTGTAATGGAAACAAGAGTCCTGATCAATGCCCCCTATTCCCCCCCCC
261 CCTTTCTGAAACTCAAGTTGAAATGGAAACAAGAGTCCTGATCAATGCCCCCTATT-CCCCCCCC
*
64020737 CCTTCTTTTTCACCATTTCCCTCACAACCACCACATCTCCTTTCATTTATTAGCCCAGTCGTAGC
325 CCTTCTTTTTCACCATTTCCCTCAC-A--ACCACATCTCCTTTCATTTATTAGCCCAGTCATAGC
64020802 AATGGAACTGGAGTTCCTTCCACCCTCCCTCTATTTCTCTTTTCTCTGTGGTCATAGCTCATGCA
387 AATGGAACTGGAGTTCCTTCCACCCT-CC-CTATTTCTCTTTTCTCTGTGGTCATAGCTCATGCA
64020867 ATGTATGTAACCAAATTTGAACAGCTGCATAAGCATTGCTCTTGTATTTCTGTCACAGTAAAACA
450 ATGTATGTAACCAAATTTGAACAGCTGCATAAGCATTGCTCTTGTATTTCTGTCACAGTAAAACA
* *
64020932 GGTGCGTTGA
515 GGTACATTGA
* *
64020942 CCTTGAATAATAATGAATTTGACTGAAGGAAATAGTTGTGAATAATTTTTGTTTTGATCAAGCTG
1 CCTTAAATAATAATGAATTTGACTGAAGGAAATAGTTGTAAATAATTTTT-TTTTGATCAAGCTG
64021007 AAATTTTTAAGTTTATGAGATATTTTATCTACACCTTTAAATCTAAAGCATATTGGTTTCAATAC
65 AAATTTTTAAGTTTATGAGATATTTTATCTACACCTTTAAATCTAAAGCATATTGGTTTC-ATAC
64021072 TTTTATATTCTCTTTAGCTGACTGTTAGTTCTGAAACTTTGAGCAAAAGACAATTCAGAGCTGGG
129 TTTTATATTCTCTTTAGCTGACTGTTAGTTCTGAAACTTTGAGCAAAAGACAATTCAGAGCTGGG
64021137 CTGGTCTAAGACATAAACTTTTATTAAATTAGTTAATTAGAATGAAATTTGGGCCCAAATATGTG
194 CTGGTCTAAGACATAAACTTTTATTAAATTAGTTAATTAGAATGAAATTTGGGCCCAAATATGTG
*
64021202 TTCCTTTCTGAAACTCAAGTTGAAATGGAAACAAGAGTCCTGATCAATGCCCCCTATTCTCCCCC
259 TTCCTTTCTGAAACTCAAGTTGAAATGGAAACAAGAGTCCTGATCAATGCCCCCTATTCCCCCCC
* **
64021267 CCTTTCTTTTTCACCATTTCCCTCACAACCACATCTCCTTTCATTTATTAGCCTGGTCATAGCAA
324 CCCTTCTTTTTCACCATTTCCCTCACAACCACATCTCCTTTCATTTATTAGCCCAGTCATAGCAA
64021332 TGGAACTGGAGTTCCTTCCACCCTCCCTATTTCTCTTTTCTCTGTGGTCATAGCTCATGCAATGT
389 TGGAACTGGAGTTCCTTCCACCCTCCCTATTTCTCTTTTCTCTGTGGTCATAGCTCATGCAATGT
64021397 ATGTAACCAAATTTGAACAGCTGCATAAGCATTGCTCTTGTATTTCTGTCACAGTAAAACAGGTA
454 ATGTAACCAAATTTGAACAGCTGCATAAGCATTGCTCTTGTATTTCTGTCACAGTAAAACAGGTA
64021462 CATTGA
519 CATTGA
64021468 CCT
1 CCT
64021471 GGGATGGCAA
Statistics
Matches: 513, Mismatches: 14, Indels: 8
0.96 0.03 0.01
Matches are distributed among these distances:
526 111 0.22
527 2 0.00
528 59 0.12
530 49 0.10
531 103 0.20
532 189 0.37
ACGTcount: A:0.29, C:0.20, G:0.15, T:0.36
Consensus pattern (524 bp):
CCTTAAATAATAATGAATTTGACTGAAGGAAATAGTTGTAAATAATTTTTTTTTGATCAAGCTGA
AATTTTTAAGTTTATGAGATATTTTATCTACACCTTTAAATCTAAAGCATATTGGTTTCATACTT
TTATATTCTCTTTAGCTGACTGTTAGTTCTGAAACTTTGAGCAAAAGACAATTCAGAGCTGGGCT
GGTCTAAGACATAAACTTTTATTAAATTAGTTAATTAGAATGAAATTTGGGCCCAAATATGTGTT
CCTTTCTGAAACTCAAGTTGAAATGGAAACAAGAGTCCTGATCAATGCCCCCTATTCCCCCCCCC
CTTCTTTTTCACCATTTCCCTCACAACCACATCTCCTTTCATTTATTAGCCCAGTCATAGCAATG
GAACTGGAGTTCCTTCCACCCTCCCTATTTCTCTTTTCTCTGTGGTCATAGCTCATGCAATGTAT
GTAACCAAATTTGAACAGCTGCATAAGCATTGCTCTTGTATTTCTGTCACAGTAAAACAGGTACA
TTGA
Found at i:64030123 original size:41 final size:41
Alignment explanation
Indices: 64029834--64030112 Score: 413
Period size: 41 Copynumber: 6.8 Consensus size: 41
64029824 TTTATCGTTA
* * * * *
64029834 GTGACATAATTCAGACTTTACGTCTAGCAGGCTTAACGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
64029875 GTGA-A-ATTATTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACA-T-TTCAGACTATAAGTCTAGCAGGCTTAATGCCG
* *
64029916 GTGACACATTTCAGGCTATAAGTCTAGCAGGCTTAACGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
64029957 GTGA-A-ATTATTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACA-T-TTCAGACTATAAGTCTAGCAGGCTTAATGCCG
*
64029998 GTGACACATTTCAGGCTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
64030039 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
*
64030080 GTGACACATTTCGGACTATAAGTCTAGCAGGCT
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCT
64030113 AAGAGCCGGT
Statistics
Matches: 219, Mismatches: 11, Indels: 16
0.89 0.04 0.07
Matches are distributed among these distances:
39 2 0.01
40 3 0.01
41 208 0.95
42 4 0.02
43 2 0.01
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (41 bp):
GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
Found at i:64030123 original size:82 final size:82
Alignment explanation
Indices: 64029855--64030112 Score: 459
Period size: 82 Copynumber: 3.1 Consensus size: 82
64029845 CAGACTTTAC
64029855 GTCTAGCAGGCTTAACGCCGGTGAAATTATTCAGACTATAAGTCTAGCAGGCTTAATGCCGGTGA
1 GTCTAGCAGGCTTAACGCCGGTGAAATTATTCAGACTATAAGTCTAGCAGGCTTAATGCCGGTGA
64029920 CACATTTCAGGCTATAA
66 CACATTTCAGGCTATAA
64029937 GTCTAGCAGGCTTAACGCCGGTGAAATTATTCAGACTATAAGTCTAGCAGGCTTAATGCCGGTGA
1 GTCTAGCAGGCTTAACGCCGGTGAAATTATTCAGACTATAAGTCTAGCAGGCTTAATGCCGGTGA
64030002 CACATTTCAGGCTATAA
66 CACATTTCAGGCTATAA
*
64030019 GTCTAGCAGGCTTAATGCCGGTGACACA-T-TTCAGACTATAAGTCTAGCAGGCTTAATGCCGGT
1 GTCTAGCAGGCTTAACGCCGGTGA-A-ATTATTCAGACTATAAGTCTAGCAGGCTTAATGCCGGT
64030082 GACACATTTC-GGACTATAA
64 GACACATTTCAGG-CTATAA
64030101 GTCTAGCAGGCT
1 GTCTAGCAGGCT
64030113 AAGAGCCGGT
Statistics
Matches: 172, Mismatches: 1, Indels: 6
0.96 0.01 0.03
Matches are distributed among these distances:
81 2 0.01
82 167 0.97
83 2 0.01
84 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (82 bp):
GTCTAGCAGGCTTAACGCCGGTGAAATTATTCAGACTATAAGTCTAGCAGGCTTAATGCCGGTGA
CACATTTCAGGCTATAA
Found at i:64030135 original size:123 final size:121
Alignment explanation
Indices: 64029842--64030166 Score: 395
Period size: 123 Copynumber: 2.6 Consensus size: 121
64029832 TAGTGACATA
* * * *
64029842 ATTCAGACTTTACGTCTAGCAGGCTTAACGCCGGTGAAATTATTCAGACTATAAGTCTAGCAGGC
1 ATTCAGACTATAAGTCTAGCAGGCTTAAAGCCGGTG--ATTATTCAGGCTATAAGTCTAGCAGGC
*
64029907 TTAATGCCGGTGACACATTTCAGGCTATAAGTCTAGCAGGCTTAACGCCGGTGAAATT
64 TTAATGCCGGTGACACATTTCAGACTATAAGTCTAGCAGGCTTAACGCCGGTGAAATT
* **
64029965 ATTCAGACTATAAGTCTAGCAGGCTTAATGCCGGTGACACATTTCAGGCTATAAGTCTAGCAGGC
1 ATTCAGACTATAAGTCTAGCAGGCTTAAAGCCGGTGA-TTA-TTCAGGCTATAAGTCTAGCAGGC
*
64030030 TTAATGCCGGTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCGGTGACACA-T
64 TTAATGCCGGTGACACATTTCAGACTATAAGTCTAGCAGGCTTAACGCCGGTGA-A-ATT
* * * * **
64030089 -TTCGGACTATAAGTCTAGCAGGC-TAAGAGCCGGTGTATTGAATCAGGTTTTAAAACCTAGCAG
1 ATTCAGACTATAAGTCTAGCAGGCTTAA-AGCCGGTG-ATT-ATTCAGGCTAT-AAGTCTAGCAG
*
64030152 GCTAAATGCCGGTGA
62 GCTTAATGCCGGTGA
64030167 ATCCGTTTAA
Statistics
Matches: 176, Mismatches: 18, Indels: 15
0.84 0.09 0.07
Matches are distributed among these distances:
121 1 0.01
122 4 0.02
123 143 0.81
124 27 0.15
125 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.27
Consensus pattern (121 bp):
ATTCAGACTATAAGTCTAGCAGGCTTAAAGCCGGTGATTATTCAGGCTATAAGTCTAGCAGGCTT
AATGCCGGTGACACATTTCAGACTATAAGTCTAGCAGGCTTAACGCCGGTGAAATT
Found at i:64030381 original size:33 final size:33
Alignment explanation
Indices: 64030325--64030422 Score: 108
Period size: 33 Copynumber: 2.9 Consensus size: 33
64030315 AGATATGTAT
*
64030325 ATATATATATATGT-TGCATTCGGCATAGGTGA
1 ATATATATATGTGTATGCATTCGGCATAGGTGA
*
64030357 ATATATTTATGTGTATGCATTCGGCATAGGTGA
1 ATATATATATGTGTATGCATTCGGCATAGGTGA
* * *
64030390 AAATAAGTGTATGTATTTATGCATTCGGCATAG
1 ATAT-A-TATATG--TGTATGCATTCGGCATAG
64030423 ATGGGTATAG
Statistics
Matches: 56, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
32 12 0.21
33 21 0.38
34 1 0.02
35 5 0.09
37 17 0.30
ACGTcount: A:0.31, C:0.09, G:0.22, T:0.38
Consensus pattern (33 bp):
ATATATATATGTGTATGCATTCGGCATAGGTGA
Found at i:64031356 original size:17 final size:16
Alignment explanation
Indices: 64031328--64031376 Score: 53
Period size: 18 Copynumber: 2.8 Consensus size: 16
64031318 TGATATGAAT
*
64031328 CAAATCATAATAGTTAAC
1 CAAAT-ATAATAATT-AC
64031346 CAAATATAATAATTAC
1 CAAATATAATAATTAC
64031362 CACAATTATAATAAT
1 CA-AA-TATAATAAT
64031377 GTTTGACCAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
16 4 0.14
17 10 0.36
18 14 0.50
ACGTcount: A:0.53, C:0.14, G:0.02, T:0.31
Consensus pattern (16 bp):
CAAATATAATAATTAC
Found at i:64038922 original size:49 final size:48
Alignment explanation
Indices: 64038849--64039034 Score: 246
Period size: 49 Copynumber: 3.8 Consensus size: 48
64038839 AGCCGAAGCT
* *
64038849 ATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAC
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCAAC
* * * *
64038897 AGTCTGGTACATGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCACC
1 A-TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAAC
** *
64038948 ATCTAATACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCAATT
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCAA-C
*
64038997 ATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACA
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
64039035 CGTGACCTCA
Statistics
Matches: 118, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
48 3 0.03
49 73 0.62
50 38 0.32
51 4 0.03
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (48 bp):
ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCAAC
Found at i:64039032 original size:99 final size:99
Alignment explanation
Indices: 64038861--64039045 Score: 327
Period size: 99 Copynumber: 1.9 Consensus size: 99
64038851 CTGGTACGCA
* *
64038861 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACATGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCCGGTACACGTAGTAGCCTGCACTTA
64038926 GTACTACACACGTGACCTCACCATCTAATACACG
66 GTACTACACACGTGACCTCACCATCTAATACACG
*
64038960 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTA-TCCGGTACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAA-CAGTCCGGTACACGTAGTAGCCTGCACTT
64039024 AGTACTACACACGTGACCTCAC
65 AGTACTACACACGTGACCTCAC
64039046 AATAGTTCAT
Statistics
Matches: 82, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
99 81 0.99
100 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.24
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCCGGTACACGTAGTAGCCTGCACTTA
GTACTACACACGTGACCTCACCATCTAATACACG
Found at i:64045063 original size:28 final size:28
Alignment explanation
Indices: 64045023--64045138 Score: 119
Period size: 28 Copynumber: 4.2 Consensus size: 28
64045013 GGAGGAAGCG
64045023 TTCTGGTGGCTCTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
*
64045051 TTCTGTTGGCTCTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* * * * * *
64045079 TTATGATAGCCCTGCCACAATTACCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* * * *
64045107 ATCTGGTGACTCTGTCA-TAATATCTG-
1 TTCTGGTGGCTCTGCCACAAATATCTGT
64045133 TTCTGG
1 TTCTGG
64045139 CAGCTATGCT
Statistics
Matches: 70, Mismatches: 18, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
26 5 0.07
27 6 0.09
28 59 0.84
ACGTcount: A:0.20, C:0.24, G:0.19, T:0.37
Consensus pattern (28 bp):
TTCTGGTGGCTCTGCCACAAATATCTGT
Found at i:64066215 original size:26 final size:26
Alignment explanation
Indices: 64066185--64066242 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 26
64066175 ATTTTCTAAA
*
64066185 ATACCCTAAGTATG-AAAATTACCATT
1 ATACCCTAAG-ATGCAAAATGACCATT
* *
64066211 ATACCCTTAGGTGCAAAATGACCATT
1 ATACCCTAAGATGCAAAATGACCATT
64066237 ATACCC
1 ATACCC
64066243 CTAGGGTTGA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
25 2 0.07
26 26 0.93
ACGTcount: A:0.38, C:0.24, G:0.10, T:0.28
Consensus pattern (26 bp):
ATACCCTAAGATGCAAAATGACCATT
Found at i:64066387 original size:28 final size:28
Alignment explanation
Indices: 64066350--64066458 Score: 166
Period size: 28 Copynumber: 3.9 Consensus size: 28
64066340 GGAGGAAGTG
64066350 TTCTGGTGGCTCTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
64066378 TTCTGGTGGCTCTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* *
64066406 TTCTGGTGGCCCTGCCACAATTATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* * *
64066434 ATCTGGTGACTCTGTCAC-AATATCT
1 TTCTGGTGGCTCTGCCACAAATATCT
64066459 ATTCTGGCAG
Statistics
Matches: 74, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
27 6 0.08
28 68 0.92
ACGTcount: A:0.18, C:0.26, G:0.20, T:0.36
Consensus pattern (28 bp):
TTCTGGTGGCTCTGCCACAAATATCTGT
Found at i:64069150 original size:13 final size:15
Alignment explanation
Indices: 64069132--64069163 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
64069122 TTTACTCATC
64069132 AATCTCTT-CCTC-A
1 AATCTCTTGCCTCTA
64069145 AATCTCTTGCCTCTA
1 AATCTCTTGCCTCTA
64069160 AATC
1 AATC
64069164 AGCCTTTCCC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 8 0.47
14 4 0.24
15 5 0.29
ACGTcount: A:0.25, C:0.34, G:0.03, T:0.38
Consensus pattern (15 bp):
AATCTCTTGCCTCTA
Found at i:64072329 original size:6 final size:6
Alignment explanation
Indices: 64072311--64072434 Score: 67
Period size: 6 Copynumber: 19.8 Consensus size: 6
64072301 AAGAAACATT
* * *
64072311 ATCAGA A-CTAGA ATCAGA ATCAGA ATTAGA ATTAG- GTGACAGAA TATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAG-A -ATCAGA
* * *
64072362 ATCAGA ATTAG- GTGACAGA ATCAGA ATCAGA ATCAGT ATCAGGTA A-CAGA
1 ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
* *
64072412 ATCAAA ATCAGA ATCAGT ATCAG
1 ATCAGA ATCAGA ATCAGA ATCAG
64072435 GTAACAGAAT
Statistics
Matches: 92, Mismatches: 13, Indels: 26
0.70 0.10 0.20
Matches are distributed among these distances:
5 5 0.05
6 72 0.78
7 9 0.10
8 5 0.05
10 1 0.01
ACGTcount: A:0.46, C:0.14, G:0.19, T:0.21
Consensus pattern (6 bp):
ATCAGA
Found at i:64072359 original size:27 final size:25
Alignment explanation
Indices: 64072325--64072394 Score: 113
Period size: 27 Copynumber: 2.7 Consensus size: 25
64072315 GAACTAGAAT
*
64072325 CAGAATCAGAATTAGAATTAGGTGA
1 CAGAATCAGAATCAGAATTAGGTGA
64072350 CAGAATATCAGAATCAGAATTAGGTGA
1 CAG-A-ATCAGAATCAGAATTAGGTGA
64072377 CAGAATCAGAATCAGAAT
1 CAGAATCAGAATCAGAAT
64072395 CAGTATCAGG
Statistics
Matches: 42, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
25 17 0.40
26 2 0.05
27 23 0.55
ACGTcount: A:0.46, C:0.11, G:0.21, T:0.21
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATTAGGTGA
Found at i:64072394 original size:31 final size:31
Alignment explanation
Indices: 64072320--64072444 Score: 150
Period size: 31 Copynumber: 4.2 Consensus size: 31
64072310 TATCAGAACT
* * *
64072320 AGAATCAGAATCAGAATTAGAATTAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
* *
64072351 AGAAT----ATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
64072378 AGAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
* *
64072409 AGAATCAAAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
64072440 AGAAT
1 AGAAT
64072445 AAAAAATCAG
Statistics
Matches: 85, Mismatches: 5, Indels: 8
0.87 0.05 0.08
Matches are distributed among these distances:
27 26 0.31
31 59 0.69
ACGTcount: A:0.46, C:0.13, G:0.20, T:0.21
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:64073249 original size:27 final size:27
Alignment explanation
Indices: 64073219--64073370 Score: 121
Period size: 27 Copynumber: 5.6 Consensus size: 27
64073209 AACACCCTAG
* *
64073219 GGGTAAAATGGTAATTTTACCCCACAA
1 GGGTAATATGGTAATTTTACCCTACAA
* * *
64073246 GGGT-ATCTCGGTAATTCTACCCTACAG
1 GGGTAATAT-GGTAATTTTACCCTACAA
* *
64073273 GGGTATTTTGGTAATTTTACCCTACAA
1 GGGTAATATGGTAATTTTACCCTACAA
* * * *
64073300 GGGT-ATTTCAGTAATTCTACCCTACAG
1 GGGTAATAT-GGTAATTTTACCCTACAA
* *
64073327 GGGT-ATTTCGGTAATTCTACCCTACAA
1 GGGTAATAT-GGTAATTTTACCCTACAA
* *
64073354 GGGTATTTTGGTAATTT
1 GGGTAATATGGTAATTT
64073371 CACAAATCAG
Statistics
Matches: 104, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
26 5 0.05
27 94 0.90
28 5 0.05
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.35
Consensus pattern (27 bp):
GGGTAATATGGTAATTTTACCCTACAA
Found at i:64073275 original size:54 final size:54
Alignment explanation
Indices: 64073217--64073399 Score: 219
Period size: 54 Copynumber: 3.4 Consensus size: 54
64073207 TTAACACCCT
** * *
64073217 AGGGGTAAAATGGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTAC
1 AGGGGTAATTTGGTAATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTAC
* *
64073271 AGGGGTATTTTGGTAATTTTACCCTACAAGGGTATTTCAGTAATTCTACCCTAC
1 AGGGGTAATTTGGTAATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTAC
* * **
64073325 AGGGGT-ATTTCGGTAATTCTACCCTACAAGGGTATTTTGGTAATT-T-CACAAATC
1 AGGGGTAATTT-GGTAATTTTACCCTACAAGGGTATTTCGGTAATTCTAC-CCTA-C
*
64073379 AGGGGTATTTTGGTAATTTTA
1 AGGGGTAATTTGGTAATTTTA
64073400 TAAATCAGGG
Statistics
Matches: 111, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
52 1 0.01
53 6 0.05
54 101 0.91
55 3 0.03
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.35
Consensus pattern (54 bp):
AGGGGTAATTTGGTAATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTAC
Found at i:64073384 original size:27 final size:27
Alignment explanation
Indices: 64073354--64073601 Score: 289
Period size: 27 Copynumber: 9.2 Consensus size: 27
64073344 TACCCTACAA
* * *
64073354 GGGTATTTTGGTAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
*
64073381 GGGTATTTTGGTAATTTTATAAATCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* *
64073408 GGGTATTTTGGTAATTTTATAAACTAA
1 GGGTATTTTGGTAATTTTATAAACCAG
* * * *
64073435 GGGTATTCTAGTAATTTTACAAAGCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* *
64073462 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAG
* *
64073489 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAG
* * *
64073516 GGGTATTTTAGTAATTGTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* *
64073543 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAG
* * * *
64073570 TGGTATTTTAGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTATAAACCAG
64073597 GGGTA
1 GGGTA
64073602 ATGTGTAACA
Statistics
Matches: 185, Mismatches: 36, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 185 1.00
ACGTcount: A:0.31, C:0.08, G:0.22, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAACCAG
Found at i:64073395 original size:81 final size:81
Alignment explanation
Indices: 64073227--64073561 Score: 266
Period size: 81 Copynumber: 4.1 Consensus size: 81
64073217 AGGGGTAAAA
* * * *
64073227 TGGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTTGGTAATTTTA
1 TGGTAATTTTACCCAACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTTGGTAATTTTA
** *
64073292 C-CCTACAAGGGTATTT
66 CAAAT-CAGGGGTATTT
** * * *
64073308 CAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTTGGTAATTTCA
1 TGGTAATTTTACCCAACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTTGGTAATTTTA
64073373 CAAATCAGGGGTATTT
66 CAAATCAGGGGTATTT
** * * *** * *
64073389 TGGTAATTTTA-TAAATCAGGGGTATTTTGGTAATTTTA-TAAACTAAGGGTATTCTAGTAATTT
1 TGGTAATTTTACCCAA-CAGGGGTATTTCGGTAATTCTACCCTAC-AAGGGTATTTTGGTAATTT
*
64073452 TACAAAGCAGGGGTATTT
64 TACAAATCAGGGGTATTT
*** * * * * *** * *
64073470 TGGTAATTTT-GTAAACCAAGGGTATTTTGGTGATTTTA-TAAACCAAGGGTATTTTAGTAATTG
1 TGGTAATTTTACCCAA-CAGGGGTATTTCGGTAATTCTACCCTA-CAAGGGTATTTTGGTAATTT
*
64073533 TACAAACCAGGGGTATTT
64 TACAAATCAGGGGTATTT
*
64073551 TGGTGATTTTA
1 TGGTAATTTTA
64073562 TAAACCAATG
Statistics
Matches: 215, Mismatches: 33, Indels: 11
0.83 0.13 0.04
Matches are distributed among these distances:
80 3 0.01
81 210 0.98
82 2 0.01
ACGTcount: A:0.28, C:0.13, G:0.21, T:0.38
Consensus pattern (81 bp):
TGGTAATTTTACCCAACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTTGGTAATTTTA
CAAATCAGGGGTATTT
Found at i:64073412 original size:54 final size:53
Alignment explanation
Indices: 64073269--64073601 Score: 292
Period size: 54 Copynumber: 6.2 Consensus size: 53
64073259 ATTCTACCCT
*** ** * **
64073269 ACAGGGGTATTTTGGTAATTTTACCCTA-CAAGGGTATTTCAGTAATTCTACCCT
1 ACAGGGGTATTTTGGTAATTTTA-TAAACCAAGGGTATTTTGGTAATTTTA-CAA
* * *** *
64073323 ACAGGGGTATTTCGGTAATTCTACCCTA-CAAGGGTATTTTGGTAATTTCACAA
1 ACAGGGGTATTTTGGTAATTTTA-TAAACCAAGGGTATTTTGGTAATTTTACAA
* * *
64073376 ATCAGGGGTATTTTGGTAATTTTATAAATCAGGGGTATTTTGGTAATTTTATAA
1 A-CAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAA
* * * * * * **
64073430 ACTAAGGGTATTCTAGTAATTTTACAAAGCAGGGGTATTTTGGTAATTTTGTAA
1 AC-AGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAA
* * * *
64073484 ACCAAGGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTAGTAATTGTACAA
1 A-CAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAA
* * *
64073538 ACCAGGGGTATTTTGGTGATTTTATAAACCAATGGTATTTTAGTAATTTTACAA
1 A-CAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAA
64073592 ACTAGGGGTA
1 AC-AGGGGTA
64073602 ATGTGTAACA
Statistics
Matches: 239, Mismatches: 35, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
53 5 0.02
54 233 0.97
55 1 0.00
ACGTcount: A:0.30, C:0.11, G:0.21, T:0.38
Consensus pattern (53 bp):
ACAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAA
Found at i:64073601 original size:81 final size:80
Alignment explanation
Indices: 64073352--64073601 Score: 347
Period size: 81 Copynumber: 3.1 Consensus size: 80
64073342 TCTACCCTAC
* * * *
64073352 AAGGGTATTTTGGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTATAAATCAGGGGTATTTT
1 AAGGGTATTTTAGTAATTT-ACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTT
64073417 GGTAATTTTATAAACT
65 GGTAATTTTATAAACT
* * *
64073433 AAGGGTATTCTAGTAATTTTACAAAGCAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTT
1 AAGGGTATTTTAGTAA-TTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTT
* *
64073498 GGTGATTTTATAAACC
65 GGTAATTTTATAAACT
* *
64073514 AAGGGTATTTTAGTAATTGTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAATGGTATTTT
1 AAGGGTATTTTAGTAATT-TACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTT
* *
64073579 AGTAATTTTACAAACT
65 GGTAATTTTATAAACT
*
64073595 AGGGGTA
1 AAGGGTA
64073602 ATGTGTAACA
Statistics
Matches: 149, Mismatches: 18, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
80 2 0.01
81 144 0.97
82 3 0.02
ACGTcount: A:0.32, C:0.08, G:0.22, T:0.39
Consensus pattern (80 bp):
AAGGGTATTTTAGTAATTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTG
GTAATTTTATAAACT
Found at i:64078105 original size:46 final size:46
Alignment explanation
Indices: 64078055--64078230 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
64078045 TGGTTGAGCA
64078055 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
64078101 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
64078146 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
64078194 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
64078231 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 64 0.59
47 28 0.26
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:64078211 original size:93 final size:93
Alignment explanation
Indices: 64078052--64078223 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
64078042 GGATGGTTGA
* *
64078052 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
64078117 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
64078145 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
64078210 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
64078224 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:64080010 original size:23 final size:23
Alignment explanation
Indices: 64079980--64080042 Score: 63
Period size: 26 Copynumber: 2.6 Consensus size: 23
64079970 GTATCCCAAG
64079980 CACACGGGCGTGTGCATTGCCTC
1 CACACGGGCGTGTGCATTGCCTC
* ***
64080003 CACCCGGGTGCCACATGCATTGCCTC
1 CACAC-GG-G-CGTGTGCATTGCCTC
64080029 CACACGGGCGTGTG
1 CACACGGGCGTGTG
64080043 ACGCTTAAAC
Statistics
Matches: 29, Mismatches: 8, Indels: 6
0.67 0.19 0.14
Matches are distributed among these distances:
23 7 0.24
24 3 0.10
25 3 0.10
26 16 0.55
ACGTcount: A:0.14, C:0.37, G:0.30, T:0.19
Consensus pattern (23 bp):
CACACGGGCGTGTGCATTGCCTC
Found at i:64080840 original size:44 final size:44
Alignment explanation
Indices: 64080754--64080842 Score: 142
Period size: 44 Copynumber: 2.0 Consensus size: 44
64080744 GAAATACGTG
*
64080754 ATCTGAACTCATGAGTTGTGGTCTGAGTTCATGATAAATGTGAC
1 ATCTGAACTCATGAGTTGTGGTCTGAGTTCATGACAAATGTGAC
* **
64080798 ATCTGAACTCATGAGTTGTGGTTTGAGTTCATGACATGTGTGAC
1 ATCTGAACTCATGAGTTGTGGTCTGAGTTCATGACAAATGTGAC
64080842 A
1 A
64080843 CATGCTTTGG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.26, C:0.13, G:0.26, T:0.35
Consensus pattern (44 bp):
ATCTGAACTCATGAGTTGTGGTCTGAGTTCATGACAAATGTGAC
Found at i:64085709 original size:45 final size:45
Alignment explanation
Indices: 64085645--64085816 Score: 274
Period size: 45 Copynumber: 3.8 Consensus size: 45
64085635 TGACATTTGG
* *
64085645 GTTGATTGTAAGCCAGTGTAAGACTATGTTGGACATGGCATCGTC
1 GTTGATTGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCGTC
64085690 GTTGATTGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCGGT-
1 GTTGATTGTGAGCCAGTGTAAGACCATGTTGGACATGGCATC-GTC
**
64085735 GTTGATTGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCAAC
1 GTTGATTGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCGTC
* *
64085780 ATTGAATGTGAGCCAGTGTAAGACCATGTTGGACATG
1 GTTGATTGTGAGCCAGTGTAAGACCATGTTGGACATG
64085817 CCCTCGGAAT
Statistics
Matches: 119, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
45 117 0.98
46 2 0.02
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (45 bp):
GTTGATTGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCGTC
Found at i:64085798 original size:90 final size:90
Alignment explanation
Indices: 64085645--64085870 Score: 299
Period size: 90 Copynumber: 2.5 Consensus size: 90
64085635 TGACATTTGG
* * ** * *
64085645 GTTGATTGTAAGCCAGTGTAAGACTATGTTGGACATGGCATCGTCGTTGATTGTGAGCCAGTGTA
1 GTTGATTGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCAACATTGAATGTGAGCCAGTGTA
* *
64085710 AGACCATGTTGGACATGGCATCGGT
66 AGACCATGTTGGACATGCCATCGGA
64085735 GTTGATTGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCAACATTGAATGTGAGCCAGTGTA
1 GTTGATTGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCAACATTGAATGTGAGCCAGTGTA
*
64085800 AGACCATGTTGGACATGCCCTCGGA
66 AGACCATGTTGGACATGCCATCGGA
* * * * *
64085825 ATTGAGATGAGGGCTAGTGTAAGACCATGTCTGGGACATGGCATCA
1 GTTGA-TTGTGAGCCAGTGTAAGACCATGT-T-GGACATGGCATCA
64085871 GCTATTCACC
Statistics
Matches: 119, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
90 85 0.71
91 20 0.17
92 1 0.01
93 13 0.11
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.27
Consensus pattern (90 bp):
GTTGATTGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCAACATTGAATGTGAGCCAGTGTA
AGACCATGTTGGACATGCCATCGGA
Found at i:64085829 original size:45 final size:45
Alignment explanation
Indices: 64085646--64085869 Score: 270
Period size: 45 Copynumber: 4.9 Consensus size: 45
64085636 GACATTTGGG
* * ***
64085646 TTGATTGTAAGCCAGTGTAAGACTATGTTGGACATGGCATCGTCG
1 TTGATTGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCGGAA
**
64085691 TTGATTGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCGGTG
1 TTGATTGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCGGAA
*
64085736 TTGATTGTGAGCCAGTGTAAGACCATGTTGGACATGGCATC-AACA
1 TTGATTGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCGGA-A
* * *
64085781 TTGAATGTGAGCCAGTGTAAGACCATGTTGGACATGCCCTCGGAA
1 TTGATTGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCGGAA
* * * *
64085826 TTGAGATGAGGGCTAGTGTAAGACCATGTCTGGGACATGGCATC
1 TTGA-TTGTGAGCCAGTGTAAGACCATGT-T-GGACATGGCATC
64085870 AGCTATTCAC
Statistics
Matches: 158, Mismatches: 16, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
45 125 0.79
46 22 0.14
47 1 0.01
48 10 0.06
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.27
Consensus pattern (45 bp):
TTGATTGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCGGAA
Found at i:64088971 original size:48 final size:48
Alignment explanation
Indices: 64088900--64089074 Score: 296
Period size: 48 Copynumber: 3.6 Consensus size: 48
64088890 TACAAGATAA
* *
64088900 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
64088948 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
64088996 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
64089044 ATATGTATATCTGGTAAAGCCGAATGGCTAA
1 ATATATATATGTGGTAAAGCCGAATGGCTAA
64089075 CACGAAATGT
Statistics
Matches: 119, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 119 1.00
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (48 bp):
ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:64090422 original size:46 final size:46
Alignment explanation
Indices: 64090372--64090547 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
64090362 TGATTGAGCA
64090372 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
64090418 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
64090463 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
64090511 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
64090548 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:64090528 original size:93 final size:93
Alignment explanation
Indices: 64090369--64090540 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
64090359 GGATGATTGA
* *
64090369 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
64090434 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
64090462 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
64090527 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
64090541 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:64097990 original size:46 final size:46
Alignment explanation
Indices: 64097940--64098115 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
64097930 TGGTTGAGCA
64097940 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
64097986 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
64098031 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
64098079 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
64098116 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:64098096 original size:93 final size:93
Alignment explanation
Indices: 64097937--64098108 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
64097927 GGATGGTTGA
* *
64097937 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
64098002 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
64098030 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
64098095 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
64098109 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:64099491 original size:48 final size:48
Alignment explanation
Indices: 64099419--64099531 Score: 190
Period size: 48 Copynumber: 2.4 Consensus size: 48
64099409 GGGCGTTACA
*
64099419 TGAAATATGTATGAGATATATATATGTGGTAAATCCGAATGGCTAATG
1 TGAAATATGTATGAGATATATATATGTGGTAAAGCCGAATGGCTAATG
* *
64099467 TGAAATATGTATGAGATATGTATATTTGGTAAAGCCGAATGGCTAATG
1 TGAAATATGTATGAGATATATATATGTGGTAAAGCCGAATGGCTAATG
*
64099515 TGAAATATGTAGGAGAT
1 TGAAATATGTATGAGAT
64099532 GTGTGTATAT
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 61 1.00
ACGTcount: A:0.37, C:0.05, G:0.25, T:0.33
Consensus pattern (48 bp):
TGAAATATGTATGAGATATATATATGTGGTAAAGCCGAATGGCTAATG
Found at i:64099726 original size:37 final size:37
Alignment explanation
Indices: 64099676--64099781 Score: 176
Period size: 37 Copynumber: 2.9 Consensus size: 37
64099666 ATATATTCCG
64099676 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCA
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCA
* *
64099713 GGTAAGACCCGATGACTACGTGTGGAGATTTTGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCA
* *
64099750 GGTAAGACCCGATAACTACGTGTGGGGATTAT
1 GGTAAGACCCGATGACTACGTGTGGAGATTAT
64099782 TCGAGCTAAA
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.25
Consensus pattern (37 bp):
GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCA
Found at i:64103626 original size:30 final size:29
Alignment explanation
Indices: 64103592--64103649 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
64103582 CTTTTGAAAA
* * *
64103592 TATTTACAATAAGAGGCATCTAATTTTTAT
1 TATTTACAAAAAGA-GCAACTAAATTTTAT
*
64103622 TATTTATAAAAAGAGCAACTAAATTTTA
1 TATTTACAAAAAGAGCAACTAAATTTTA
64103650 AAAATAATTC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 12 0.50
30 12 0.50
ACGTcount: A:0.43, C:0.09, G:0.09, T:0.40
Consensus pattern (29 bp):
TATTTACAAAAAGAGCAACTAAATTTTAT
Found at i:64117208 original size:21 final size:20
Alignment explanation
Indices: 64117184--64117227 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
64117174 CATAGGAGGG
*
64117184 CAAAAAGAGCGAGAAACAGGC
1 CAAAAAGAGAGA-AAACAGGC
* *
64117205 CAAAAATAGAGAAAACGGGC
1 CAAAAAGAGAGAAAACAGGC
64117225 CAA
1 CAA
64117228 TATGGGAATC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.55, C:0.18, G:0.25, T:0.02
Consensus pattern (20 bp):
CAAAAAGAGAGAAAACAGGC
Found at i:64137267 original size:46 final size:45
Alignment explanation
Indices: 64137108--64137281 Score: 201
Period size: 46 Copynumber: 3.8 Consensus size: 45
64137098 GGTTGAGCAT
64137108 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*** * *
64137153 TCC-AACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCAT-
1 -CCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAATG
*
64137200 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
64137245 CCCGAGCTCGTTGAGTTGAGTCCGGGTTCACTTATGG
1 -CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
64137282 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 12, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 26 0.24
46 47 0.44
47 25 0.23
48 4 0.04
49 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.29
Consensus pattern (45 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:64141081 original size:46 final size:45
Alignment explanation
Indices: 64141031--64141206 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 45
64141021 TGGTTGAGCA
64141031 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
64141077 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
64141124 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
64141170 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
64141207 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 69 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:64141187 original size:93 final size:93
Alignment explanation
Indices: 64141028--64141198 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
64141018 GGATGGTTGA
* *
64141028 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
64141093 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* *
64141121 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
64141186 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
64141199 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:64144982 original size:46 final size:45
Alignment explanation
Indices: 64144931--64145097 Score: 203
Period size: 46 Copynumber: 3.6 Consensus size: 45
64144921 CACTAGGATG
*
64144931 GTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTC
1 GTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-GTCCGAGCTC
*** * *
64144977 GTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-TCCGAGCTC
1 GTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAGTCCGAGCTC
*
64145024 GTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTC
1 GTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-GTCCGAGCTC
64145070 GTTGAGTTGAGTCCGAGTTCACTTATGG
1 GTTGAGTTGAGTCCGAGTTCACTTATGG
64145098 GCGGGTTACA
Statistics
Matches: 102, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 60 0.59
47 32 0.31
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.31, T:0.29
Consensus pattern (45 bp):
GTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAGTCCGAGCTC
Found at i:64147787 original size:48 final size:48
Alignment explanation
Indices: 64147727--64147906 Score: 160
Period size: 48 Copynumber: 3.9 Consensus size: 48
64147717 TACTTGGTAG
* * *
64147727 GATGCCAATGCCATATCCTAGATATGGTCTTACATGGGACCACATATC
1 GATGGCAATGCCATATCCTAGACATGGTCTTACATGGGATCACATATC
* *
64147775 GATGGCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC--A-C
1 GATGGCAATGCCATATCCTAGACATGGTCTTACATGGGATCACATATC
* * * ** *
64147820 -ATTG--ATGCCGATAGCCTAG-CTATGGTCTTACACGATATTACATATC
1 GATGGCAATGCC-ATATCCTAGAC-ATGGTCTTACATGGGATCACATATC
* *
64147866 GAT-GCTAAAGCCATGTCCTAGACATGGTCTTACATGGGATC
1 GATGGC-AATGCCATATCCTAGACATGGTCTTACATGGGATC
64147907 GTACATAGCC
Statistics
Matches: 102, Mismatches: 20, Indels: 20
0.72 0.14 0.14
Matches are distributed among these distances:
42 6 0.06
43 22 0.22
44 3 0.03
45 2 0.02
46 3 0.03
47 2 0.02
48 59 0.58
49 5 0.05
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (48 bp):
GATGGCAATGCCATATCCTAGACATGGTCTTACATGGGATCACATATC
Found at i:64151998 original size:27 final size:27
Alignment explanation
Indices: 64151956--64152007 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
64151946 ATCACATAGG
*
64151956 GGCAAAATAGTAATTTTATTATATAAA
1 GGCAAAATAGTAATTTTATCATATAAA
*
64151983 GGCAAAATAGTCATTTTATCATATA
1 GGCAAAATAGTAATTTTATCATATA
64152008 TTACCGACCC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.44, C:0.08, G:0.12, T:0.37
Consensus pattern (27 bp):
GGCAAAATAGTAATTTTATCATATAAA
Found at i:64158822 original size:26 final size:27
Alignment explanation
Indices: 64158793--64158846 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
64158783 CCCCACAAGT
*
64158793 TAGTCATTT-ACGCACGAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
* *
64158819 TAGTCATTTAACACCCTAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
64158846 T
1 T
64158847 GGTAATTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 9 0.38
27 15 0.62
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.22
Consensus pattern (27 bp):
TAGTCATTTAACACACGAGGGGCAAAA
Found at i:64158989 original size:27 final size:27
Alignment explanation
Indices: 64158847--64158992 Score: 168
Period size: 27 Copynumber: 5.4 Consensus size: 27
64158837 GGGGCAAAAT
* * * *
64158847 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
64158874 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
64158901 GGTATTTTTACCCTACAAGGGTATTGT-
1 GGTAATTCTACCCTACAGGGGTATT-TC
**
64158928 AATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
64158955 GATAATTCTAGCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
64158982 GGTAATTCTAC
1 GGTAATTCTAC
64158993 AACTTATCCA
Statistics
Matches: 100, Mismatches: 17, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
26 1 0.01
27 98 0.98
28 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:64162081 original size:40 final size:40
Alignment explanation
Indices: 64162019--64162199 Score: 213
Period size: 40 Copynumber: 4.5 Consensus size: 40
64162009 TATTCGGATG
* **
64162019 ATATCCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTTCCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
* *
64162059 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
** * *
64162099 ATATCCGGGCTAAGTCCCGAAGGCATTCATACTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
* * *
64162139 ATAACCGGGCTAAGACCCGAAGGCATGTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGACT
* *
64162179 ATATCC-GGTTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
64162200 ATACTTGGGT
Statistics
Matches: 120, Mismatches: 20, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
39 12 0.10
40 106 0.88
41 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
Found at i:64170096 original size:40 final size:40
Alignment explanation
Indices: 64170034--64170214 Score: 231
Period size: 40 Copynumber: 4.5 Consensus size: 40
64170024 TATTCGGATG
**
64170034 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTCCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
* * *
64170074 ATACCCGGGCTAAGTCCTGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
** *
64170114 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
* * *
64170154 ATAACCGGGCTAAGACCCGAAGGCATTTTTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGACT
*
64170194 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
64170215 ATACTTGGGT
Statistics
Matches: 123, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
39 13 0.11
40 108 0.88
41 2 0.02
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
Found at i:64176423 original size:40 final size:41
Alignment explanation
Indices: 64176338--64176439 Score: 138
Period size: 40 Copynumber: 2.6 Consensus size: 41
64176328 ATACCAGCTC
* * *
64176338 ATAGCCTGCGGGTCTCT-AGCCCGGATAGCAGTCTAGCACG
1 ATAGCCTGCGGGTCTTTAAGCCCGGATAACAGTCCAGCACG
* *
64176378 A-AGCCTGCGGGTCTTTAAGCCCGGATAACATTCCAGCA-T
1 ATAGCCTGCGGGTCTTTAAGCCCGGATAACAGTCCAGCACG
64176417 ATAGCCTGCGGGTCTTTAAGCCC
1 ATAGCCTGCGGGTCTTTAAGCCC
64176440 AAATACAATT
Statistics
Matches: 55, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
39 15 0.27
40 40 0.73
ACGTcount: A:0.22, C:0.29, G:0.26, T:0.23
Consensus pattern (41 bp):
ATAGCCTGCGGGTCTTTAAGCCCGGATAACAGTCCAGCACG
Found at i:64182636 original size:46 final size:45
Alignment explanation
Indices: 64182535--64182628 Score: 136
Period size: 46 Copynumber: 2.1 Consensus size: 45
64182525 TGTAACCCGC
* *
64182535 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-ATGCGCAA
* *
64182581 CTATAAGTGAACTCGGACTCAACTCAACGAGTTCGG-ATGCTCAA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATGCGCAA
64182625 CCAT
1 CCAT
64182629 CCTAGTGACA
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
44 8 0.19
46 35 0.81
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATGCGCAA
Found at i:64183965 original size:160 final size:160
Alignment explanation
Indices: 64183789--64184106 Score: 573
Period size: 160 Copynumber: 2.0 Consensus size: 160
64183779 TTTCTTCACG
64183789 AAATTTTCACACAATCATAAAATCATATCATAGACCTCAAAATAATCATAAAATAATTATTTTTA
1 AAATTTTCACACAATCATAAAATCATATCATAGACCTCAAAATAATCATAAAATAATTATTTTTA
*
64183854 TCTCAAATTTTGTGGTCACGAAACCACTATTTCGACTAGACCCAAAATCAGGATATTACATACTG
66 TCTCAAATTTTGTGGTCACGAAACCACTATTCCGACTAGACCCAAAATCAGGATATTACATACTG
64183919 ATTCAAGCTTCTTTTCTGATTCTTTACTCA
131 ATTCAAGCTTCTTTTCTGATTCTTTACTCA
* *
64183949 AAATTTTCATACAATCATACAATCATATCATAGACCTCAAAATAATCATAAAATAATTATTTTTA
1 AAATTTTCACACAATCATAAAATCATATCATAGACCTCAAAATAATCATAAAATAATTATTTTTA
** * *
64184014 TCTCGGATTTTGTGGTCACGAAACCACTATTCCGACTAGGCCCAAAATTAGGATATTACATACTG
66 TCTCAAATTTTGTGGTCACGAAACCACTATTCCGACTAGACCCAAAATCAGGATATTACATACTG
64184079 ATTCAAGCTTCTTTTCTGATTCTTTACT
131 ATTCAAGCTTCTTTTCTGATTCTTTACT
64184107 ATCAAGTACA
Statistics
Matches: 151, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
160 151 1.00
ACGTcount: A:0.36, C:0.20, G:0.08, T:0.36
Consensus pattern (160 bp):
AAATTTTCACACAATCATAAAATCATATCATAGACCTCAAAATAATCATAAAATAATTATTTTTA
TCTCAAATTTTGTGGTCACGAAACCACTATTCCGACTAGACCCAAAATCAGGATATTACATACTG
ATTCAAGCTTCTTTTCTGATTCTTTACTCA
Found at i:64186928 original size:40 final size:40
Alignment explanation
Indices: 64186881--64186959 Score: 106
Period size: 40 Copynumber: 2.0 Consensus size: 40
64186871 GTAGGTCTCT
* *
64186881 AGCCCGGATAGCAGTCTAGCACGA-AGCCTGCGGGTCTTTA
1 AGCCCGGATAACAGTCCAGCA-GATAGCCTGCGGGTCTTTA
* *
64186921 AGCCCGGATAACATTCCAGCATATAGCCTGCGGGTCTTT
1 AGCCCGGATAACAGTCCAGCAGATAGCCTGCGGGTCTTT
64186960 CATCCCAGAT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
39 1 0.03
40 33 0.97
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.23
Consensus pattern (40 bp):
AGCCCGGATAACAGTCCAGCAGATAGCCTGCGGGTCTTTA
Found at i:64190204 original size:27 final size:26
Alignment explanation
Indices: 64190156--64190216 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 26
64190146 GCGAGGTTTC
*
64190156 CAGATATTGTGACAAAGTCACCAGATA
1 CAGATATTGTGACAAAGCCACCAGA-A
* * *
64190183 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACAAAGCCACCAGAA
*
64190209 CAAATATT
1 CAGATATT
64190217 TATATATGTG
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.23
Consensus pattern (26 bp):
CAGATATTGTGACAAAGCCACCAGAA
Found at i:64190964 original size:27 final size:27
Alignment explanation
Indices: 64190934--64191077 Score: 200
Period size: 27 Copynumber: 5.4 Consensus size: 27
64190924 GGGCAAAATA
* * * *
64190934 GTAATTTTACCCCACAAGGGTATCTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
64190961 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
* * *
64190988 GTATTTC-ACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCG
*
64191014 ATAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
*
64191041 GTAATTCTACCTTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
64191068 GTAATTCTAC
1 GTAATTCTAC
64191078 AACTTATCCA
Statistics
Matches: 103, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
26 22 0.21
27 81 0.79
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCG
Found at i:64191019 original size:53 final size:53
Alignment explanation
Indices: 64190937--64191077 Score: 201
Period size: 53 Copynumber: 2.6 Consensus size: 53
64190927 CAAAATAGTA
* * *
64190937 ATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGGT
1 ATTTCACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGT
**
64190990 ATTTCACCCTACAAGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCGGT
1 ATTTCACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGT
* * *
64191043 AATTCTACCTTACAGGGGTATTTCGGTAATTCTAC
1 ATTTC-ACCCTACAAGGGTATTTCGGTAATTCTAC
64191078 AACTTATCCA
Statistics
Matches: 77, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
53 52 0.68
54 25 0.32
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.34
Consensus pattern (53 bp):
ATTTCACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGT
Found at i:64200020 original size:44 final size:43
Alignment explanation
Indices: 64199957--64200115 Score: 134
Period size: 44 Copynumber: 3.7 Consensus size: 43
64199947 TATGTGTTCT
*
64199957 CGTGTAAGACCACGCCTGGGACGTTGGCATCGACTTATGATTTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGA-TTATGATTTA
* * *
64200001 CGTGTAAGACCATGTCTGGGACATTGGCGTCGTATT-TGATTTCA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCG-ATTATGATTT-A
* *
64200045 C--GAAAGACC-CTGTCTGGGACAG-TGACATC-ATTATTTGA-TTA
1 CGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATTA--TGATTTA
* *
64200086 CATGTAAGACCACGTCTGGGATGTTGGCAT
1 CGTGTAAGACCACGTCTGGGACGTTGGCAT
64200116 TGTACGAGCT
Statistics
Matches: 92, Mismatches: 12, Indels: 23
0.72 0.09 0.18
Matches are distributed among these distances:
40 3 0.03
41 2 0.02
42 24 0.26
43 29 0.32
44 33 0.36
45 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACGTTGGCATCGATTATGATTTA
Found at i:64200080 original size:43 final size:42
Alignment explanation
Indices: 64200006--64200106 Score: 105
Period size: 43 Copynumber: 2.4 Consensus size: 42
64199996 ATTTACGTGT
* * * * *
64200006 AAGACCATGTCTGGGACATTGGCGTCGTATTTGATTTCACGA
1 AAGACCCTGTCTGGGACAGTGACATCGTATTTGATTACACGA
* * *
64200048 AAGACCCTGTCTGGGACAGTGACATCATTATTTGATTACATGT
1 AAGACCCTGTCTGGGACAGTGACATC-GTATTTGATTACACGA
64200091 AAGACCAC-GTCTGGGA
1 AAGACC-CTGTCTGGGA
64200107 TGTTGGCATT
Statistics
Matches: 49, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
42 22 0.45
43 26 0.53
44 1 0.02
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.29
Consensus pattern (42 bp):
AAGACCCTGTCTGGGACAGTGACATCGTATTTGATTACACGA
Found at i:64200920 original size:22 final size:22
Alignment explanation
Indices: 64200882--64200924 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
64200872 TTGGCATGAT
64200882 TTTGGTATGGTTATAATCATGGA
1 TTTGGTATGGTTATAAT-ATGGA
*
64200905 TTTGGT-TGTTTATAATATGG
1 TTTGGTATGGTTATAATATGG
64200925 TATGAATGGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 4 0.21
22 9 0.47
23 6 0.32
ACGTcount: A:0.23, C:0.02, G:0.26, T:0.49
Consensus pattern (22 bp):
TTTGGTATGGTTATAATATGGA
Found at i:64206068 original size:40 final size:40
Alignment explanation
Indices: 64206006--64206147 Score: 173
Period size: 40 Copynumber: 3.6 Consensus size: 40
64205996 TATTCGGATG
* *
64206006 ATAACCGGGCTAAGTCCTGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
* * *
64206046 A-ATTCCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
*
64206086 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGT-AGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGA-CT
* *
64206126 ATATCC-GGCTAAATCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
64206148 TACTTGGTTT
Statistics
Matches: 89, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
39 17 0.19
40 71 0.80
41 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
Found at i:64213987 original size:40 final size:40
Alignment explanation
Indices: 64213882--64214098 Score: 316
Period size: 40 Copynumber: 5.5 Consensus size: 40
64213872 CGGATGATAA
* * *
64213882 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGAATA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
64213922 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
64213961 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTTTAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
64214001 TCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
64214041 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
64214081 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
64214099 TACTTAGTTT
Statistics
Matches: 163, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 51 0.31
40 112 0.69
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:64214094 original size:119 final size:118
Alignment explanation
Indices: 64213883--64214098 Score: 330
Period size: 119 Copynumber: 1.8 Consensus size: 118
64213873 GGATGATAAC
* *
64213883 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGAATAATTCCGGGCTAAGCCCGAAGGCATTTGTG
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGAATAA-TCCGGGCTAAGCCCGAAGGCATTTGAG
*
64213948 CGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTTTATT
65 CGAGTTACTATATCCGGGCTAAATCCCGAAGGCATTTGTGCGAGTTACTTTATT
*
64214002 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGA--ATAATCCGGGCTAAG-CCCGAAGGCATTTG
64214066 AGCGAG-TAGCTATATCC-GGCTAAATCCCGAAGG
63 AGCGAGTTA-CTATATCCGGGCTAAATCCCGAAGG
64214099 TACTTAGTTT
Statistics
Matches: 89, Mismatches: 4, Indels: 8
0.88 0.04 0.08
Matches are distributed among these distances:
119 58 0.65
120 27 0.30
121 4 0.04
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (118 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGAATAATCCGGGCTAAGCCCGAAGGCATTTGAGC
GAGTTACTATATCCGGGCTAAATCCCGAAGGCATTTGTGCGAGTTACTTTATT
Found at i:64215535 original size:43 final size:42
Alignment explanation
Indices: 64215456--64215539 Score: 123
Period size: 43 Copynumber: 2.0 Consensus size: 42
64215446 ACAAATACCA
* * * *
64215456 TGTCTGGGACATTGGTATCGTATTTGATTTCGTGTAAGACCC
1 TGTCTGGGACAATGGCATCGTATTTGATTACATGTAAGACCC
64215498 TGTCTGGGACAATGGCATCGATATTTGATTACATGTAAGACC
1 TGTCTGGGACAATGGCATCG-TATTTGATTACATGTAAGACC
64215540 ACGACTGGGA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
42 18 0.49
43 19 0.51
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.35
Consensus pattern (42 bp):
TGTCTGGGACAATGGCATCGTATTTGATTACATGTAAGACCC
Found at i:64215557 original size:43 final size:42
Alignment explanation
Indices: 64215459--64215558 Score: 121
Period size: 43 Copynumber: 2.4 Consensus size: 42
64215449 AATACCATGT
* * * *
64215459 CTGGGACATTGGTATCGTATTTGATTTCGTGTAAGACCCTGT
1 CTGGGACATTGGCATCGTATTTGATTACATGTAAGACCCTGA
*
64215501 CTGGGACAATGGCATCGATATTTGATTACATGTAAGACCAC-GA
1 CTGGGACATTGGCATCG-TATTTGATTACATGTAAGACC-CTGA
*
64215544 CTGGGACGTTGGCAT
1 CTGGGACATTGGCAT
64215559 TGTACAAGCT
Statistics
Matches: 49, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
42 15 0.31
43 33 0.67
44 1 0.02
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (42 bp):
CTGGGACATTGGCATCGTATTTGATTACATGTAAGACCCTGA
Found at i:64218920 original size:48 final size:48
Alignment explanation
Indices: 64218849--64219173 Score: 497
Period size: 48 Copynumber: 6.8 Consensus size: 48
64218839 CAAGATAAAT
* * * * *
64218849 ATATATATGTGTGGTGAAGCCGAATGGCTAATGTGAAATATATGTGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
* * *
64218897 ATATGTGTATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
* * *
64218945 ATATGTATATGTGGTAAAGCCGAATGACGAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
64218993 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
* *
64219041 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
* * *
64219089 ATATGTATATGTGGTAAAGCCGAATGGCGAATATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
*
64219137 ATATGTATATGTAGTAAAGCCGAATGGCTAATGTGAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
64219174 TGTTGTAACA
Statistics
Matches: 254, Mismatches: 23, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 254 1.00
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
Found at i:64219100 original size:144 final size:144
Alignment explanation
Indices: 64218849--64219173 Score: 569
Period size: 144 Copynumber: 2.3 Consensus size: 144
64218839 CAAGATAAAT
* * * * * *
64218849 ATATATATGTGTGGTGAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTGTATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAA
*
64218914 AGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGACGAATGT
66 AGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGACGAATAT
64218979 GAAATATGTATGAG
131 GAAATATGTATGAG
64218993 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAA
*
64219058 AGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATAT
66 AGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGACGAATAT
64219123 GAAATATGTATGAG
131 GAAATATGTATGAG
*
64219137 ATATGTATATGTAGTAAAGCCGAATGGCTAATGTGAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
64219174 TGTTGTAACA
Statistics
Matches: 172, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
144 172 1.00
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.31
Consensus pattern (144 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAA
AGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGACGAATAT
GAAATATGTATGAG
Found at i:64219268 original size:37 final size:37
Alignment explanation
Indices: 64219218--64219318 Score: 184
Period size: 37 Copynumber: 2.7 Consensus size: 37
64219208 GTAATGTATT
*
64219218 CGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTTTATC
64219255 CGGGTAAGACCCGATGACTACGTGTGGAGATTTTATC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTTTATC
*
64219292 CGGGTAAGACCCGATAACTACGTGTGG
1 CGGGTAAGACCCGATGACTACGTGTGG
64219319 GGACTATTCG
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.25
Consensus pattern (37 bp):
CGGGTAAGACCCGATGACTACGTGTGGAGATTTTATC
Found at i:64221575 original size:40 final size:40
Alignment explanation
Indices: 64221262--64221561 Score: 456
Period size: 40 Copynumber: 7.5 Consensus size: 40
64221252 AGTTGTATAG
*
64221262 CCGGGCTAAGTCCCGAAGAGCATTCGAGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
64221302 CCGGGTTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
* *
64221342 CCAGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAA
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
64221382 CCGGGCTAAGTCCTGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
64221422 CCGGGTTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
* *
64221462 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
* ** * * * *
64221502 CCGTGCTAAACCCCGAAGAGCATTCATGCTGGTGTTATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
64221542 CCGGGCTAGGTCCCGAAGAG
1 CCGGGCTAAGTCCCGAAGAG
64221562 AAATCATGCT
Statistics
Matches: 236, Mismatches: 24, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 236 1.00
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
Found at i:64221789 original size:25 final size:25
Alignment explanation
Indices: 64221739--64221789 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
64221729 TGTGTAACAA
* *
64221739 CAAATGAATAGGGGCACTATGTGTG
1 CAAATGAATAGAGGCACTATGAGTG
*
64221764 CAAATGATTAGAGGCACTGA-GAGTG
1 CAAATGAATAGAGGCACT-ATGAGTG
64221789 C
1 C
64221790 GAGTTCTTCT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 21 0.95
26 1 0.05
ACGTcount: A:0.33, C:0.14, G:0.31, T:0.22
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTATGAGTG
Found at i:64224703 original size:48 final size:48
Alignment explanation
Indices: 64224635--64225007 Score: 602
Period size: 48 Copynumber: 7.8 Consensus size: 48
64224625 CAAGATAAAT
* * *
64224635 ATATATATGTGTGGTGAAGCCGAATGGCTAATGTGAAATATATGTGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
*
64224683 ATATGTGTATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
* * * * *
64224731 ATATGTATATGTGGTAAAGCCGAATGACGAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
* *
64224779 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
64224827 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
64224875 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
* * * *
64224923 ATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
*
64224971 ATATGTATATGTGGTAAAGTCGAATGGCTAATGTGAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
64225008 TGTTGTAACA
Statistics
Matches: 304, Mismatches: 21, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 304 1.00
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.32
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
Found at i:64225101 original size:37 final size:37
Alignment explanation
Indices: 64225051--64225153 Score: 152
Period size: 37 Copynumber: 2.8 Consensus size: 37
64225041 GGAAATGTAT
* *
64225051 TCCGGGTAAGACCCGATGACTACGTGTGGATATTTTG
1 TCCGGGTAAGACCCGATGAATACGTGTGGAGATTTTG
*
64225088 TCCGGGTAAGACCCAATGAATACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGAATACGTGTGGAGATTTTG
* * *
64225125 TTCGGGTAAGACCCGATAAAAACGTGTGG
1 TCCGGGTAAGACCCGATGAATACGTGTGG
64225154 GGACTATTCG
Statistics
Matches: 59, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 59 1.00
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGAATACGTGTGGAGATTTTG
Found at i:64233351 original size:40 final size:40
Alignment explanation
Indices: 64233280--64233385 Score: 144
Period size: 40 Copynumber: 2.7 Consensus size: 40
64233270 TACCAGCTCG
* * * *
64233280 TAGCCTGCTGGTCTCT-AGCCCGGATAGCATTCTAGCACGA
1 TAGCCTGCGGGTCTTTAAGCCCGGATAACATTCCAGCA-GA
*
64233320 -AGCCTGCGGGTCTTTAAGCCCGGATAACATTCCAGCATA
1 TAGCCTGCGGGTCTTTAAGCCCGGATAACATTCCAGCAGA
64233359 TAGCCTGCGGGTCTTTAAGCCCGGATA
1 TAGCCTGCGGGTCTTTAAGCCCGGATA
64233386 CAATTCCTCA
Statistics
Matches: 59, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
39 14 0.24
40 45 0.76
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
TAGCCTGCGGGTCTTTAAGCCCGGATAACATTCCAGCAGA
Found at i:64233392 original size:40 final size:41
Alignment explanation
Indices: 64233254--64233392 Score: 139
Period size: 40 Copynumber: 3.5 Consensus size: 41
64233244 CCTGTAGGAA
* * * * *
64233254 TTTAAACCCGG-TATAATACCAGCTCG-TAGCCTGCTGGTC
1 TTTAAGCCCGGATACAATTCCAGCACGATAGCCTGCGGGTC
* *
64233293 TCT-AGCCCGGATAGC-ATTCTAGCACGA-AGCCTGCGGGTC
1 TTTAAGCCCGGATA-CAATTCCAGCACGATAGCCTGCGGGTC
*
64233332 TTTAAGCCCGGATA-ACATTCCAGCA-TATAGCCTGCGGGTC
1 TTTAAGCCCGGATACA-ATTCCAGCACGATAGCCTGCGGGTC
64233372 TTTAAGCCCGGATACAATTCC
1 TTTAAGCCCGGATACAATTCC
64233393 TCAAGTATCA
Statistics
Matches: 82, Mismatches: 10, Indels: 15
0.77 0.09 0.14
Matches are distributed among these distances:
38 6 0.07
39 26 0.32
40 49 0.60
41 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.25
Consensus pattern (41 bp):
TTTAAGCCCGGATACAATTCCAGCACGATAGCCTGCGGGTC
Found at i:64238156 original size:40 final size:40
Alignment explanation
Indices: 64238085--64238223 Score: 201
Period size: 40 Copynumber: 3.5 Consensus size: 40
64238075 TACCAGCTCG
* * * *
64238085 TAGCCTGCGGGTCTCT-ATCCCGGATAGCATTCTAGCACGA
1 TAGCCTGCGGGTCTTTAAGCCCGGATAACATTCTAGCA-TA
64238125 -AGCCTGCGGGTCTTTAAGCCCGGATAACATTCTAGCATA
1 TAGCCTGCGGGTCTTTAAGCCCGGATAACATTCTAGCATA
*
64238164 TAGCCTGCGGGTCTTTAAGCCCGGATAACATTCCAGCATA
1 TAGCCTGCGGGTCTTTAAGCCCGGATAACATTCTAGCATA
*
64238204 TAGCCTGCAGGTCTTTAAGC
1 TAGCCTGCGGGTCTTTAAGC
64238224 TCGAATACAA
Statistics
Matches: 91, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
39 15 0.16
40 76 0.84
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
TAGCCTGCGGGTCTTTAAGCCCGGATAACATTCTAGCATA
Found at i:64239708 original size:15 final size:15
Alignment explanation
Indices: 64239672--64239724 Score: 69
Period size: 15 Copynumber: 3.8 Consensus size: 15
64239662 TTTAATATTT
*
64239672 TAAAAACATACACAA
1 TAAAAATATACACAA
64239687 TAAAAATATACACAA
1 TAAAAATATACACAA
64239702 T-AAAA-ATA-A-AA
1 TAAAAATATACACAA
64239713 TAAAAATATACA
1 TAAAAATATACA
64239725 TCGCCAAACT
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
11 3 0.09
12 5 0.15
13 6 0.18
14 5 0.15
15 15 0.44
ACGTcount: A:0.70, C:0.11, G:0.00, T:0.19
Consensus pattern (15 bp):
TAAAAATATACACAA
Found at i:64240715 original size:39 final size:39
Alignment explanation
Indices: 64240661--64240774 Score: 183
Period size: 39 Copynumber: 2.9 Consensus size: 39
64240651 CATAACATAT
* *
64240661 TTCCAGCACGTAGCCTGCGGACCTTAAGTCCGGATATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
* * *
64240700 TTCCAGCACATAGCCTACGAACCCTAAGTCCAGATATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
64240739 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATA
64240775 CACATCAAAA
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 67 1.00
ACGTcount: A:0.29, C:0.31, G:0.19, T:0.21
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
Found at i:64243868 original size:546 final size:545
Alignment explanation
Indices: 64242848--64243904 Score: 1319
Period size: 546 Copynumber: 1.9 Consensus size: 545
64242838 CAATTAGAAT
* * * * *
64242848 AAAATCACAATGCATACCTTTCAATTGAAATAGCCATGGCCGAATGCCTTGGTTTCTTTTTCAAT
1 AAAATCACAATACATACCTTTAAATTGAAATAACCATGGCCGAATGCCTTGGCTTCTTCTTCAAT
* * ** * * ** *
64242913 CTTTTCTTTCTTAATTTCGGCAATGAAGAAGAAAGATGAGCATTCTTTAAATTTTGTTTTCTTTA
66 CTTTTCTTTCTCAATTTCGGCAATGAAGAAGAAAGATGAACACCCATT-AATTTTATCATATTTA
* * *
64242978 CCTTATTTTACTAATTATTCTTTTATTTCAAAATAATTCAAATTCTTATTATAATATTTAATTAA
130 CCTTATTTTACTAATTATTCTTTTATTTCAAAATAATTCAAATACTTATTATAATACTTAAATAA
* * * *
64243043 ACATATATATTGCCCATCAATAATCATTATGGCCAGCCACCATAATAAAAAAATTGGATATTTGA
195 ACACATATATTACCCATCAACAATCATTATGGCCAGCCACCATAATAAAAAAAGTGGATATTTGA
* ** * *
64243108 CATGAAAGTCCAAACTTTTTGTGACATGCATTAATAGACCCCTTTTTAAAATTACCTATCACCTT
260 CATGAAAGTCCAAACTTATACTGACATGCATTAATAGACCAC-TTTTAAAATTACCTATCACATT
* * *
64243173 CCACAATTATTTCACACAAGTCCTATTTAATAATTTCACATACAAATGACAAAATTAGAGCATGA
324 CCACAAGTATTTCACACAAGTCCTATTTAATAATTTCACATACAAATGACAAAATCAAAGCATGA
* * *
64243238 AACTTTCACATATGCATGTACACATATAATAAGCATATAATATAACAATCAATTATTTTTATGAC
389 AACTTTCACACATGCATGTACACATATAATAAACATAGAATATAACAATCAATTATTTTTATGAC
* *
64243303 TCGGTTTTGTGGTCCCGAAACCACTTCCCGACTAGGGTCAAATTAGGGTTGTCACAGTACTTATC
454 TCGATTTTGTGGTCCCGAAACCACTTCCCGACTAGGGTCAAATTAGGGCTGTCACAGTACTTATC
64243368 AATTTAATTTCATAATCAATTACAAAA
519 AATTTAATTTCATAATCAATTACAAAA
* *
64243395 AAAATCACATTACATACCTTTAAATTGAGATAACCATGGCCGAATGCCTTGGCTTCTTCTTCAAT
1 AAAATCACAATACATACCTTTAAATTGAAATAACCATGGCCGAATGCCTTGGCTTCTTCTTCAAT
*
64243460 ATTTTTCTTTCTCAATTTCGGCAATGAAGAAAGAAAGATGAACACCCATT-ATTTTATCATATTT
66 -CTTTTCTTTCTCAATTTCGGCAATGAAG-AAGAAAGATGAACACCCATTAATTTTATCATATTT
** *
64243524 TTCTTATTTTACTAATTATT-TTCTTATTTCAAAATAATTC-CATCACTTATTATAATACTTAAA
129 ACCTTATTTTACTAATTATTCTT-TTATTTCAAAATAATTCAAAT-ACTTATTATAATACTTAAA
* * * * * *
64243587 TAAA-ACATATATTATCCATCAACCATCATTATGGCCGGCCACTAT-AT-TAAAAAGTGGTCTAT
192 TAAACACATATATTACCCATCAACAATCATTATGGCCAGCCACCATAATAAAAAAAGTGG-ATAT
* ** * * * *
64243649 TTGACATGCAAGTCC-CCCATGTCAATACT-TCATGCATTATTTG-GCAC-TTTAAAATTTACCT
256 TTGACATGAAAGTCCAAAC-T-T--ATACTGACATGCATTAATAGACCACTTTTAAAA-TTACCT
** * **
64243710 ATCACATT-TTCAAGTCTTATCACATGAGTCCTATCTT-ATAAATTTCACATACAAATGACAAAA
316 ATCACATTCCACAAGTATT-TCACACAAGTCCTAT-TTAAT-AATTTCACATACAAATGACAAAA
* ** *
64243773 TCAAAGCATGAAACTTTCACACATGCATTTACACATATAATAAACATAGAATATAACGGTTAATT
378 TCAAAGCATGAAACTTTCACACATGCATGTACACATATAATAAACATAGAATATAACAATCAATT
* *
64243838 ATTTTTATGACTTGATTTTGTGGTCCCGAAACCACTTTCCGACTAGGGTCAAATTAGGGCTGTCA
443 ATTTTTATGACTCGATTTTGTGGTCCCGAAACCACTTCCCGACTAGGGTCAAATTAGGGCTGTCA
64243903 CA
508 CA
64243905 TGCTTAGTGT
Statistics
Matches: 433, Mismatches: 64, Indels: 27
0.83 0.12 0.05
Matches are distributed among these distances:
544 22 0.05
545 48 0.11
546 185 0.43
547 134 0.31
548 28 0.06
549 16 0.04
ACGTcount: A:0.35, C:0.19, G:0.10, T:0.36
Consensus pattern (545 bp):
AAAATCACAATACATACCTTTAAATTGAAATAACCATGGCCGAATGCCTTGGCTTCTTCTTCAAT
CTTTTCTTTCTCAATTTCGGCAATGAAGAAGAAAGATGAACACCCATTAATTTTATCATATTTAC
CTTATTTTACTAATTATTCTTTTATTTCAAAATAATTCAAATACTTATTATAATACTTAAATAAA
CACATATATTACCCATCAACAATCATTATGGCCAGCCACCATAATAAAAAAAGTGGATATTTGAC
ATGAAAGTCCAAACTTATACTGACATGCATTAATAGACCACTTTTAAAATTACCTATCACATTCC
ACAAGTATTTCACACAAGTCCTATTTAATAATTTCACATACAAATGACAAAATCAAAGCATGAAA
CTTTCACACATGCATGTACACATATAATAAACATAGAATATAACAATCAATTATTTTTATGACTC
GATTTTGTGGTCCCGAAACCACTTCCCGACTAGGGTCAAATTAGGGCTGTCACAGTACTTATCAA
TTTAATTTCATAATCAATTACAAAA
Found at i:64244740 original size:43 final size:44
Alignment explanation
Indices: 64244641--64244756 Score: 141
Period size: 42 Copynumber: 2.7 Consensus size: 44
64244631 TCTAGGACGT
* * * *
64244641 TGGCATCGACT-TATGATTTACGTGTAAGACCTTGTCTGGGACAT
1 TGGCATCGA-TATTTGATTTACGTGTAAGACCCTGTCTGGGAAAG
*
64244685 TGGCATCG-TATTTGATTT-CGTGTAGGACCCTGTCTGGGAAAG
1 TGGCATCGATATTTGATTTACGTGTAAGACCCTGTCTGGGAAAG
*
64244727 TGGCATCGATATTTGA-TTACATGTAAGACC
1 TGGCATCGATATTTGATTTACGTGTAAGACC
64244757 ACGTTAGGGA
Statistics
Matches: 62, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
42 31 0.50
43 23 0.37
44 8 0.13
ACGTcount: A:0.23, C:0.17, G:0.26, T:0.34
Consensus pattern (44 bp):
TGGCATCGATATTTGATTTACGTGTAAGACCCTGTCTGGGAAAG
Found at i:64244774 original size:43 final size:43
Alignment explanation
Indices: 64244617--64244775 Score: 155
Period size: 43 Copynumber: 3.7 Consensus size: 43
64244607 AATGTGTTAT
* * * *
64244617 CGTGTAAGACCACATCTAGGACGTTGGCATCGACT-TATGATTTA
1 CGTGTAAGACCACGTCTGGGACATTGGCATCGA-TATTTGA-TTA
** *
64244661 CGTGTAAGACCTTGTCTGGGACATTGGCATCG-TATTTGATTT
1 CGTGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTA
* * *
64244703 CGTGTAGGACC-CTGTCTGGGAAAGTGGCATCGATATTTGATTA
1 CGTGTAAGACCAC-GTCTGGGACATTGGCATCGATATTTGATTA
*
64244746 CATGTAAGACCACGT-TAGGGACATTGGCAT
1 CGTGTAAGACCACGTCT-GGGACATTGGCAT
64244776 TGTACGAGCT
Statistics
Matches: 94, Mismatches: 16, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
42 31 0.33
43 35 0.37
44 28 0.30
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTA
Found at i:64245996 original size:31 final size:32
Alignment explanation
Indices: 64245938--64245999 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 32
64245928 ACGAAGTCAC
* **
64245938 CAGATACATATATTGTGGCTAGGCCACCAGAA
1 CAGATACATATATTGTGGCGAAACCACCAGAA
*
64245970 CAGATATATATA-TGTGGCGAAACCACCAGA
1 CAGATACATATATTGTGGCGAAACCACCAGA
64246000 TTGCAACGAG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
31 15 0.58
32 11 0.42
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.21
Consensus pattern (32 bp):
CAGATACATATATTGTGGCGAAACCACCAGAA
Found at i:64249503 original size:50 final size:49
Alignment explanation
Indices: 64249417--64249614 Score: 245
Period size: 50 Copynumber: 4.0 Consensus size: 49
64249407 CGATTATAGA
* *
64249417 AAATCAAATATAATATCACATATGTGCATACCTATATGGCCGAATATAC
1 AAATCAAATATAACATCACATATGTACATACCTATATGGCCGAATATAC
* * * *
64249466 AAGATCAAATTTAACATCAAATATGTACTTACTTATATGGCCGAATATAC
1 AA-ATCAAATATAACATCACATATGTACATACCTATATGGCCGAATATAC
* * * *
64249516 AAATTCAAATATAATATCACATTTGTGCATACCT-TCATGGCCGAATATTC
1 AAA-TCAAATATAACATCACATATGTACATACCTAT-ATGGCCGAATATAC
* *
64249566 AAAATCCAATATAACATCACATATGTACATACCTATGTGGCCGAATATA
1 -AAATCAAATATAACATCACATATGTACATACCTATATGGCCGAATATA
64249615 TACAAGGTCA
Statistics
Matches: 124, Mismatches: 20, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
49 4 0.03
50 116 0.94
51 4 0.03
ACGTcount: A:0.41, C:0.19, G:0.10, T:0.30
Consensus pattern (49 bp):
AAATCAAATATAACATCACATATGTACATACCTATATGGCCGAATATAC
Found at i:64249532 original size:100 final size:100
Alignment explanation
Indices: 64249411--64249614 Score: 293
Period size: 100 Copynumber: 2.0 Consensus size: 100
64249401 TTTGGTCGAT
* *
64249411 TATAGAAAATCAAATATAATATCACATATGTGCATACCTAT-ATGGCCGAATATACAAGATCAAA
1 TATACAAAATCAAATATAATATCACATATGTGCATACCT-TCATGGCCGAATATACAAAATCAAA
* * *
64249475 TTTAACATCAAATATGTACTTACTTATATGGCCGAA
65 TATAACATCAAATATGTACATACCTATATGGCCGAA
* * * *
64249511 TATACAAATTCAAATATAATATCACATTTGTGCATACCTTCATGGCCGAATATTCAAAATCCAAT
1 TATACAAAATCAAATATAATATCACATATGTGCATACCTTCATGGCCGAATATACAAAATCAAAT
* *
64249576 ATAACATCACATATGTACATACCTATGTGGCCGAA
66 ATAACATCAAATATGTACATACCTATATGGCCGAA
64249611 TATA
1 TATA
64249615 TACAAGGTCA
Statistics
Matches: 92, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
99 1 0.01
100 91 0.99
ACGTcount: A:0.41, C:0.18, G:0.10, T:0.30
Consensus pattern (100 bp):
TATACAAAATCAAATATAATATCACATATGTGCATACCTTCATGGCCGAATATACAAAATCAAAT
ATAACATCAAATATGTACATACCTATATGGCCGAA
Found at i:64249818 original size:41 final size:41
Alignment explanation
Indices: 64249773--64249850 Score: 97
Period size: 41 Copynumber: 1.9 Consensus size: 41
64249763 GTCTGATACT
* *
64249773 ATTCACCGGCA-ATAAGCCTGCTTGGCAT-AAAGCCCGATTAC
1 ATTCACCAGCATA-AAGCCTGCTAGGC-TCAAAGCCCGATTAC
*
64249814 ATTCACCAGCATAAAGCTTGCTAGGCTCAAAGCCCGA
1 ATTCACCAGCATAAAGCCTGCTAGGCTCAAAGCCCGA
64249851 ATATCACTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 1 0.03
41 30 0.94
42 1 0.03
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.21
Consensus pattern (41 bp):
ATTCACCAGCATAAAGCCTGCTAGGCTCAAAGCCCGATTAC
Found at i:64255710 original size:38 final size:38
Alignment explanation
Indices: 64255668--64255745 Score: 156
Period size: 38 Copynumber: 2.1 Consensus size: 38
64255658 TGATTTGTTA
64255668 GGGTCACTTGGACGCTTGACAACTGTGGATCCACCGGC
1 GGGTCACTTGGACGCTTGACAACTGTGGATCCACCGGC
64255706 GGGTCACTTGGACGCTTGACAACTGTGGATCCACCGGC
1 GGGTCACTTGGACGCTTGACAACTGTGGATCCACCGGC
64255744 GG
1 GG
64255746 CTTAAAGTCA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.18, C:0.28, G:0.33, T:0.21
Consensus pattern (38 bp):
GGGTCACTTGGACGCTTGACAACTGTGGATCCACCGGC
Found at i:64258997 original size:12 final size:12
Alignment explanation
Indices: 64258980--64259006 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
64258970 AGAATTTCAA
64258980 AAATGAAAATGG
1 AAATGAAAATGG
64258992 AAATGAAAATGG
1 AAATGAAAATGG
64259004 AAA
1 AAA
64259007 CTTGAAATCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.63, C:0.00, G:0.22, T:0.15
Consensus pattern (12 bp):
AAATGAAAATGG
Found at i:64263956 original size:36 final size:35
Alignment explanation
Indices: 64263889--64263956 Score: 82
Period size: 36 Copynumber: 1.9 Consensus size: 35
64263879 TTAGGCTAGA
* ** *
64263889 ATGAGATGAGGATTAAAATGTTTAAATTTCAATTT
1 ATGAGATAAGGATTAAAATGTGAAAAGTTCAATTT
*
64263924 ATGAGCATAAGGATTAAATTGTGAAAAGTTCAA
1 ATGAG-ATAAGGATTAAAATGTGAAAAGTTCAA
64263957 ATGTTAGAGG
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
35 5 0.19
36 22 0.81
ACGTcount: A:0.43, C:0.04, G:0.19, T:0.34
Consensus pattern (35 bp):
ATGAGATAAGGATTAAAATGTGAAAAGTTCAATTT
Found at i:64266449 original size:28 final size:29
Alignment explanation
Indices: 64266379--64266500 Score: 131
Period size: 28 Copynumber: 4.3 Consensus size: 29
64266369 GTACAACTTT
* * * *
64266379 AAAGGCTCACACATAGCAGAATTAGCCAT
1 AAAGGCTCACATATAACAGAATCAGCCAC
64266408 AAAGGCTCACATATAACAGAATCA-CCAC
1 AAAGGCTCACATATAACAGAATCAGCCAC
* * * *
64266436 AAAGGCTCATATATAACAAAAACA-ACAC
1 AAAGGCTCACATATAACAGAATCAGCCAC
* * *
64266464 AAAGGCCCACATATAATAGAATTAGCCAC
1 AAAGGCTCACATATAACAGAATCAGCCAC
64266493 AAAGGCTC
1 AAAGGCTC
64266501 CTACAATTCA
Statistics
Matches: 76, Mismatches: 16, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
28 45 0.59
29 31 0.41
ACGTcount: A:0.47, C:0.25, G:0.13, T:0.16
Consensus pattern (29 bp):
AAAGGCTCACATATAACAGAATCAGCCAC
Found at i:64266704 original size:55 final size:53
Alignment explanation
Indices: 64266604--64266715 Score: 147
Period size: 55 Copynumber: 2.1 Consensus size: 53
64266594 GTCCTTGTCA
*
64266604 TCTTTTCTCCATATGATGCCATAGTCCCAACTAGGTCTTACACTATGTGGTCT
1 TCTTTTCTCCATATGATGCCATAGTCCCAACTAGGTCTTACACTATATGGTCT
* *
64266657 TCTTTTC-CCATATGATGCCATAG-CCACTATGACTAGGTTTTACACTATATTGTCT
1 TCTTTTCTCCATATGATGCCATAGTCC-C-A--ACTAGGTCTTACACTATATGGTCT
64266712 TCTT
1 TCTT
64266716 GCCATGGTCA
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
51 2 0.04
52 17 0.33
53 8 0.15
55 25 0.48
ACGTcount: A:0.21, C:0.25, G:0.13, T:0.40
Consensus pattern (53 bp):
TCTTTTCTCCATATGATGCCATAGTCCCAACTAGGTCTTACACTATATGGTCT
Found at i:64268873 original size:16 final size:16
Alignment explanation
Indices: 64268839--64268874 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
64268829 CGACAGTCCA
*
64268839 CTTTTTGACTTTTCGG
1 CTTTTTGACTTTTCAG
*
64268855 CTTTTTGACTTTTTAG
1 CTTTTTGACTTTTCAG
64268871 CTTT
1 CTTT
64268875 CACCGTTCAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.08, C:0.17, G:0.14, T:0.61
Consensus pattern (16 bp):
CTTTTTGACTTTTCAG
Found at i:64269707 original size:35 final size:35
Alignment explanation
Indices: 64269661--64269731 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
64269651 TATGACCGAA
64269661 ATTTTTGACAAAATGAACACCTCTATTCGGTCAAC
1 ATTTTTGACAAAATGAACACCTCTATTCGGTCAAC
*
64269696 ATTTTTGACAAAATGAACACCTCTATTTGGTCAAC
1 ATTTTTGACAAAATGAACACCTCTATTCGGTCAAC
64269731 A
1 A
64269732 ACCTAACACC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.35, C:0.21, G:0.11, T:0.32
Consensus pattern (35 bp):
ATTTTTGACAAAATGAACACCTCTATTCGGTCAAC
Found at i:64281051 original size:42 final size:42
Alignment explanation
Indices: 64280998--64281166 Score: 243
Period size: 42 Copynumber: 4.1 Consensus size: 42
64280988 TTAAGCCTGG
* * ** *
64280998 ATATAGTACCAGCACTAAGCCTATGGGATTTAACCTGGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
64281040 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG--AT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
* * *
64281080 ATATATTACTAGCATGAAGCCTGCGGAATTTAACCCGGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
*
64281122 ATATATTACCAGCACGAAGCCTGCGAGATTTAACCCGGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
64281164 ATA
1 ATA
64281167 ATATATCGAG
Statistics
Matches: 113, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
40 37 0.33
42 76 0.67
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.26
Consensus pattern (42 bp):
ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
Found at i:64281084 original size:82 final size:82
Alignment explanation
Indices: 64280998--64281166 Score: 259
Period size: 82 Copynumber: 2.1 Consensus size: 82
64280988 TTAAGCCTGG
* * *
64280998 ATATAGTACCAGCACT-AAGCCTATGGGATTTAACCTGGATATATATATTACCAGCACGAAGCCT
1 ATATAGTACCAGCA-TGAAGCCTACGGAATTTAACCCGGATATATATATTACCAGCACGAAGCCT
*
64281062 GCGGGATTTAACCCGGAT
65 GCGAGATTTAACCCGGAT
* * *
64281080 ATATATTACTAGCATGAAGCCTGCGGAATTTAACCCGGATATATATATTACCAGCACGAAGCCTG
1 ATATAGTACCAGCATGAAGCCTACGGAATTTAACCCGGATATATATATTACCAGCACGAAGCCTG
64281145 CGAGATTTAACCCGGAT
66 CGAGATTTAACCCGGAT
64281162 ATATA
1 ATATA
64281167 ATATATCGAG
Statistics
Matches: 79, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
81 1 0.01
82 78 0.99
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.26
Consensus pattern (82 bp):
ATATAGTACCAGCATGAAGCCTACGGAATTTAACCCGGATATATATATTACCAGCACGAAGCCTG
CGAGATTTAACCCGGAT
Found at i:64289379 original size:64 final size:64
Alignment explanation
Indices: 64289221--64289537 Score: 318
Period size: 64 Copynumber: 4.9 Consensus size: 64
64289211 ATACAGATGG
* * * ** *
64289221 TATGTAGCTAGGTCACATGTGTAATAC-GGGATGTATACCATGT-GTACAAGAGAGCTACGAGAC
1 TATGTAGCTAGGTCGCATGGGTGATACTATG-TGTACACCATGTAG-ACAAGAGAGCTACGAG--
64289284 ATTA
62 A-TA
*
64289288 TGAGGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATA
1 T-ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATA
64289353 TATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATA
1 TATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATA
* * * * * * * * *
64289417 AATGTAGCTAGGTTGCATGTGTGGTTCCAGGTGAAGGACACCATGTAAACAAGAGAGCTACGAGA
1 TATGTAGCTAGGTCGCATGGGTGATACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGA
64289482 TA
63 TA
* * * * * *
64289484 -AAGTGGCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 TATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
64289538 CAAAATCATG
Statistics
Matches: 214, Mismatches: 29, Indels: 18
0.82 0.11 0.07
Matches are distributed among these distances:
63 19 0.09
64 86 0.40
65 3 0.01
66 24 0.11
67 31 0.14
68 49 0.23
69 2 0.01
ACGTcount: A:0.31, C:0.15, G:0.29, T:0.24
Consensus pattern (64 bp):
TATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATA
Found at i:64293446 original size:27 final size:27
Alignment explanation
Indices: 64293381--64293436 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
64293371 ACAATCATAC
* * *
64293381 ATCACATAGGGGCCTAATAGTTATTTT
1 ATCACATAGGGGCATAACAGTCATTTT
64293408 ATCACATAGGGGCATAACAGTCATTTT
1 ATCACATAGGGGCATAACAGTCATTTT
64293435 AT
1 AT
64293437 TAATTAGGGG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (27 bp):
ATCACATAGGGGCATAACAGTCATTTT
Found at i:64299928 original size:27 final size:27
Alignment explanation
Indices: 64299874--64299931 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
64299864 ACAATCATAC
* * * *
64299874 ATCACATAGGGGCATAACAGTTATTTT
1 ATCACATAGGGCCATAACAATCAATTT
64299901 ATCACATAGGGCCATAACAATCAATTT
1 ATCACATAGGGCCATAACAATCAATTT
64299928 ATCA
1 ATCA
64299932 ATTAAGGGGT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.38, C:0.19, G:0.14, T:0.29
Consensus pattern (27 bp):
ATCACATAGGGCCATAACAATCAATTT
Found at i:64300077 original size:17 final size:19
Alignment explanation
Indices: 64300046--64300087 Score: 70
Period size: 18 Copynumber: 2.3 Consensus size: 19
64300036 CATATTACGG
64300046 GCCCATGTGGGCCCACACA
1 GCCCATGTGGGCCCACACA
64300065 -CCCATGT-GGCCCACACA
1 GCCCATGTGGGCCCACACA
64300082 GCCCAT
1 GCCCAT
64300088 AATGGCCTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 10 0.45
18 12 0.55
ACGTcount: A:0.21, C:0.45, G:0.21, T:0.12
Consensus pattern (19 bp):
GCCCATGTGGGCCCACACA
Found at i:64300093 original size:19 final size:17
Alignment explanation
Indices: 64300055--64300094 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 17
64300045 GGCCCATGTG
*
64300055 GGCCCACACACCCATGT
1 GGCCCACACACCCATAT
64300072 GGCCCACACAGCCCATAAT
1 GGCCCACACA-CCCAT-AT
64300091 GGCC
1 GGCC
64300095 TTGGCCATGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 10 0.50
18 5 0.25
19 5 0.25
ACGTcount: A:0.25, C:0.45, G:0.20, T:0.10
Consensus pattern (17 bp):
GGCCCACACACCCATAT
Found at i:64300660 original size:44 final size:44
Alignment explanation
Indices: 64300603--64300692 Score: 180
Period size: 44 Copynumber: 2.0 Consensus size: 44
64300593 TTAATAACCT
64300603 AAACCATTATTGATCACACCAATAGTTTGAACCAACCGAATAAC
1 AAACCATTATTGATCACACCAATAGTTTGAACCAACCGAATAAC
64300647 AAACCATTATTGATCACACCAATAGTTTGAACCAACCGAATAAC
1 AAACCATTATTGATCACACCAATAGTTTGAACCAACCGAATAAC
64300691 AA
1 AA
64300693 CTTACCGAAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.44, C:0.24, G:0.09, T:0.22
Consensus pattern (44 bp):
AAACCATTATTGATCACACCAATAGTTTGAACCAACCGAATAAC
Found at i:64302321 original size:8 final size:8
Alignment explanation
Indices: 64302308--64302335 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
64302298 ACTTAAGTAT
64302308 ATAATATA
1 ATAATATA
64302316 ATAATATA
1 ATAATATA
64302324 ATAATATA
1 ATAATATA
64302332 ATAA
1 ATAA
64302336 AACATAAAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (8 bp):
ATAATATA
Found at i:64302425 original size:12 final size:13
Alignment explanation
Indices: 64302401--64302433 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
64302391 AAGGAACTGG
64302401 GAGAAAAAGAAAA
1 GAGAAAAAGAAAA
64302414 GAGAAAAA-AAAA
1 GAGAAAAAGAAAA
*
64302426 GGGAAAAA
1 GAGAAAAA
64302434 TTAGGGTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (13 bp):
GAGAAAAAGAAAA
Found at i:64304247 original size:26 final size:26
Alignment explanation
Indices: 64304218--64304311 Score: 111
Period size: 26 Copynumber: 3.6 Consensus size: 26
64304208 TTAGTTTACC
64304218 AAATTACTGAAATACCCCCAGTTGTA
1 AAATTACTGAAATACCCCCAGTTGTA
* *
64304244 AAATTAC-CAAAGTACCCCCAGTTATA
1 AAATTACTGAAA-TACCCCCAGTTGTA
*
64304270 AAATTA-TCGAAATACCCTCAGTTTGTA
1 AAATTACT-GAAATACCCCCAG-TTGTA
*
64304297 AAATTACTAAAATAC
1 AAATTACTGAAATAC
64304312 ACTCACATGT
Statistics
Matches: 57, Mismatches: 6, Indels: 9
0.79 0.08 0.12
Matches are distributed among these distances:
25 3 0.05
26 34 0.60
27 19 0.33
28 1 0.02
ACGTcount: A:0.43, C:0.21, G:0.09, T:0.28
Consensus pattern (26 bp):
AAATTACTGAAATACCCCCAGTTGTA
Found at i:64304262 original size:27 final size:26
Alignment explanation
Indices: 64304230--64304339 Score: 105
Period size: 26 Copynumber: 4.2 Consensus size: 26
64304220 ATTACTGAAA
64304230 TACCCCCAGTTGTAAAATTACCAAAG
1 TACCCCCAGTTGTAAAATTACCAAAG
* *
64304256 TACCCCCAGTTATAAAATTATCGAAA-
1 TACCCCCAGTTGTAAAATTA-CCAAAG
* * *
64304282 TACCCTCAGTTTGTAAAATTACTAAAA
1 TACCCCCAG-TTGTAAAATTACCAAAG
* * ** *
64304309 TACACTCACATGTAAAATTAACAAAG
1 TACCCCCAGTTGTAAAATTACCAAAG
64304335 TACCC
1 TACCC
64304340 TCGAATTAAA
Statistics
Matches: 69, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
26 48 0.70
27 21 0.30
ACGTcount: A:0.42, C:0.24, G:0.08, T:0.26
Consensus pattern (26 bp):
TACCCCCAGTTGTAAAATTACCAAAG
Found at i:64304325 original size:53 final size:51
Alignment explanation
Indices: 64304218--64304341 Score: 124
Period size: 53 Copynumber: 2.4 Consensus size: 51
64304208 TTAGTTTACC
* * * **
64304218 AAATTACTGAAATACCCCCAGTTGTAAAATTACCAAAGTACCCCCAGTTATA
1 AAATTAC-GAAATACCCTCAGTTGTAAAATTACCAAAATACACCCACATATA
* * *
64304270 AAATTATCGAAATACCCTCAGTTTGTAAAATTACTAAAATACACTCACATGTA
1 AAATTA-CGAAATACCCTCAG-TTGTAAAATTACCAAAATACACCCACATATA
64304323 AAATTAAC-AAAGTACCCTC
1 AAATT-ACGAAA-TACCCTC
64304342 GAATTAAAAA
Statistics
Matches: 60, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
52 21 0.35
53 38 0.63
54 1 0.02
ACGTcount: A:0.43, C:0.23, G:0.08, T:0.27
Consensus pattern (51 bp):
AAATTACGAAATACCCTCAGTTGTAAAATTACCAAAATACACCCACATATA
Found at i:64304390 original size:27 final size:27
Alignment explanation
Indices: 64304335--64304610 Score: 331
Period size: 27 Copynumber: 10.2 Consensus size: 27
64304325 ATTAACAAAG
* *
64304335 TACCCTCGAATTAAAAAAATTACTATTT
1 TACCCTCG-ATTTACAAAATTACTATTT
* *
64304363 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* * *
64304390 TACCCTCAATTTATAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
64304417 TACCCTCGATTTACAAAATTA-TCATTT
1 TACCCTCGATTTACAAAATTACT-ATTT
* * *
64304444 TACCCTCGATTTATAGAATTATTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* * *
64304471 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
**
64304498 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTATTT
64304525 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* * *
64304552 TACCCTTGATTTACAGAATTA-TCGTTT
1 TACCCTCGATTTACAAAATTACT-ATTT
* *
64304579 TACCCTTGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
64304606 TACCC
1 TACCC
64304611 CTAGGGTGTT
Statistics
Matches: 217, Mismatches: 27, Indels: 9
0.86 0.11 0.04
Matches are distributed among these distances:
26 1 0.00
27 207 0.95
28 9 0.04
ACGTcount: A:0.32, C:0.22, G:0.06, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTATTT
Found at i:64304435 original size:81 final size:81
Alignment explanation
Indices: 64304335--64304610 Score: 399
Period size: 81 Copynumber: 3.4 Consensus size: 81
64304325 ATTAACAAAG
* * * * *
64304335 TACCCTCGAATTAAAAAAATTACTATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCAAT
1 TACCCTCG-ATTTACAAAATTACCATTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGAT
*
64304400 TTATAAAATTACCATTT
65 TTATAGAATTACCATTT
* * *
64304417 TACCCTCGATTTACAAAATTATCATTTTACCCTCGATTTATAGAATTATTATTTTACCCTCGATT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATT
64304482 TATAGAATTACCATTT
66 TATAGAATTACCATTT
* * *
64304498 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAAAATTACTATTTTACCCTTGATT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATT
* * *
64304563 TACAGAATTATCGTTT
66 TATAGAATTACCATTT
*
64304579 TACCCTTGATTTACAAAATTACCATTTTACCC
1 TACCCTCGATTTACAAAATTACCATTTTACCC
64304611 CTAGGGTGTT
Statistics
Matches: 174, Mismatches: 20, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
81 166 0.95
82 8 0.05
ACGTcount: A:0.32, C:0.22, G:0.06, T:0.41
Consensus pattern (81 bp):
TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATT
TATAGAATTACCATTT
Found at i:64304897 original size:27 final size:26
Alignment explanation
Indices: 64304853--64304904 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
64304843 CTCGCTGCAA
*
64304853 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
64304880 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
64304905 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Done.