Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 188 of 295
Found at i:64554063 original size:54 final size:53
Alignment explanation
Indices: 64553949--64554088 Score: 190
Period size: 54 Copynumber: 2.6 Consensus size: 53
64553939 CAATTTACAA
* *
64553949 AATTACCGAAATACCCTTGTAGGGTAGAAATACGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAGAATTACGAAATACCCCTGTAAGGTAG
* * * *
64554002 AAATACCGAAATACCCCTGTAGGGTAGAATTATTGAAATACTCCTGTAAGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAGAATTA-CGAAATACCCCTGTAAGGTAG
* * *
64554056 AATTACCGAGATACCCTTGTGGGGTAAAATTAC
1 AATTACCGAAATACCCTTGTAGGGTAGAATTAC
64554089 CATTTTACCC
Statistics
Matches: 74, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
53 29 0.39
54 45 0.61
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.25
Consensus pattern (53 bp):
AATTACCGAAATACCCTTGTAGGGTAGAATTACGAAATACCCCTGTAAGGTAG
Found at i:64554378 original size:27 final size:26
Alignment explanation
Indices: 64554334--64554385 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
64554324 CTCACTGCAA
*
64554334 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
64554361 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
64554386 GCAGCCTCTG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:64557068 original size:27 final size:26
Alignment explanation
Indices: 64557016--64557074 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
64557006 CCACATATAT
*
64557016 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
64557042 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
64557069 ATATCT
1 ATATCT
64557075 AGCAGCCTCG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.36
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:64558735 original size:48 final size:49
Alignment explanation
Indices: 64558524--64558748 Score: 162
Period size: 48 Copynumber: 4.9 Consensus size: 49
64558514 CACATAGTAA
*
64558524 GATGCCAATGCCATCTCCCAGAT-ATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATATCCCAGATCATGGTCTTACATGGGATCACATATC
* * * * * **
64558572 GATGCC-A----ATAGCCCAGCT-ATAGTCTTACAAGATG-TCTTATATC
1 GATGCCAATGCCATATCCCAGATCATGGTCTTACATG-GGATCACATATC
* * ** *
64558615 GATGCC-ATG-----TCCTAGA-CATGGTCTTACACGAAATCAGATATC
1 GATGCCAATGCCATATCCCAGATCATGGTCTTACATGGGATCACATATC
* * *
64558657 GATGCCAATGCCATATTCCAGAT-ATAGTCTTACATGGGATCACATATT
1 GATGCCAATGCCATATCCCAGATCATGGTCTTACATGGGATCACATATC
64558705 GATGCCAATGCCAGT-TCCCAG-TCATGGTCTTACATGGGATCACA
1 GATGCCAATGCCA-TATCCCAGATCATGGTCTTACATGGGATCACA
64558749 CCAAACCCTA
Statistics
Matches: 136, Mismatches: 27, Indels: 28
0.71 0.14 0.15
Matches are distributed among these distances:
42 28 0.21
43 36 0.26
44 1 0.01
47 2 0.01
48 68 0.50
49 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (49 bp):
GATGCCAATGCCATATCCCAGATCATGGTCTTACATGGGATCACATATC
Found at i:64560949 original size:72 final size:72
Alignment explanation
Indices: 64560826--64560971 Score: 256
Period size: 72 Copynumber: 2.0 Consensus size: 72
64560816 TAAGCCATAG
** *
64560826 CAATTAGACACCTTTATCAAATAGAATACAACTTTTGCATTTTACGTGATTTAGTCCTTTTCTGA
1 CAATTAGACACCTTTATCAAATAGAATACAACTTTTGCATTTTACACGATTTAGTCCTTTTCTCA
64560891 AATTAAC
66 AATTAAC
*
64560898 CAATTAGACACCTTTATCAAATAGAATACAACTTTTTCATTTTACACGATTTAGTCCTTTTCTCA
1 CAATTAGACACCTTTATCAAATAGAATACAACTTTTGCATTTTACACGATTTAGTCCTTTTCTCA
64560963 AATTAAC
66 AATTAAC
64560970 CA
1 CA
64560972 CTTAAACGAT
Statistics
Matches: 70, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
72 70 1.00
ACGTcount: A:0.34, C:0.20, G:0.08, T:0.38
Consensus pattern (72 bp):
CAATTAGACACCTTTATCAAATAGAATACAACTTTTGCATTTTACACGATTTAGTCCTTTTCTCA
AATTAAC
Found at i:64562644 original size:49 final size:50
Alignment explanation
Indices: 64562514--64562809 Score: 312
Period size: 49 Copynumber: 5.9 Consensus size: 50
64562504 TCTATTTTGA
* * *
64562514 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGAAAACTGT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAA-TGT
* * * *
64562565 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAAT-T
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATGT
* * * *
64562614 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAA-TGT
* * * ** ** *
64562665 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTA-ATGGTGA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATGT
* *
64562714 GGTCACGTGTGTAGTACTAAGTGTAGGCTACTATGTGTACCAGACT-AT-T
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA-TAATGT
** * *
64562763 GGTTGCATGTGTAGTACTAAGTGCAGGATACTATGCGTACCAGATAA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAA
64562810 CTTCGGCTAC
Statistics
Matches: 202, Mismatches: 38, Indels: 12
0.80 0.15 0.05
Matches are distributed among these distances:
48 1 0.00
49 119 0.59
50 5 0.02
51 77 0.38
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (50 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATGT
Found at i:64562725 original size:100 final size:101
Alignment explanation
Indices: 64562511--64562754 Score: 384
Period size: 100 Copynumber: 2.4 Consensus size: 101
64562501 TGATCTATTT
64562511 TGAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGAAAACTGTGATCACGTGTG
1 TGAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGAAAACTGTGATCACGTGTG
*
64562576 TAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA
66 TAGTACTAAGTGCAGGCTACTACGTGTACCGAATAA
* *
64562612 T-TGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACGTGTG
1 TGAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGAAAACTGTGATCACGTGTG
** **
64562676 TAGTACTAAGTGCAGGCTACTACGTGTA-TTAATGG
66 TAGTACTAAGTGCAGGCTACTACGTGTACCGAATAA
* * *
64562711 TGAGGTCACGTGTGTAGTACTAAGTGTAGGCTACTATGTGTACC
1 TGAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACC
64562755 AGACTATTGG
Statistics
Matches: 130, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
99 3 0.02
100 126 0.97
101 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (101 bp):
TGAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGAAAACTGTGATCACGTGTG
TAGTACTAAGTGCAGGCTACTACGTGTACCGAATAA
Found at i:64562795 original size:149 final size:150
Alignment explanation
Indices: 64562521--64562803 Score: 417
Period size: 149 Copynumber: 1.9 Consensus size: 150
64562511 TGAGGTCGCA
* *
64562521 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGAAAACTGTGATCACGTGTGTAGTACTAAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCGAAAACTGAGATCACGTGTGTAGTACTAAG
* *
64562586 TGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCG
65 TGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACTAAGTGCAGGATACTATGCG
64562651 TACCCGAAAACTGTGATCACG
130 TACCCGAAAACTGTGATCACG
** *** *
64562672 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TTAATGGTGAGGTCACGTGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAAAACTGAGATCACGTGTGTAGTACTAAGT
* * *
64562736 GTAGGCTACTATGTGTACCAGACT-ATTGGTTGCATGTGTAGTACTAAGTGCAGGATACTATGCG
66 GCAGGCTACTACGTGTACCAGA-TAATTGGTCGCATGTGTAGTACTAAGTGCAGGATACTATGCG
64562800 TACC
130 TACC
64562804 AGATAACTTC
Statistics
Matches: 118, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
149 86 0.73
150 1 0.01
151 31 0.26
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (150 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAAAACTGAGATCACGTGTGTAGTACTAAGT
GCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACTAAGTGCAGGATACTATGCGT
ACCCGAAAACTGTGATCACG
Found at i:64570741 original size:43 final size:43
Alignment explanation
Indices: 64570631--64570792 Score: 145
Period size: 43 Copynumber: 3.8 Consensus size: 43
64570621 AGCTCGTACA
* * *
64570631 ATGCC-ATATCCCAG-CTATGGTCTTACATGTTATCAC-ATATCG
1 ATGCCAATGTCCCAGAC-ATGGTCTTACACGTAATCACAATA-CG
* * * *
64570673 ATGCCACT-TCCCAGACAGGGTCTTACACGTAATC-GATTAACG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAAT-ACG
* * *
64570715 ATGCCAATGTCCCAAACATGGTCTTACACGCAATCACAATACA
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAATACG
* * *
64570758 ATGCGAATGTCCCTGACATGGTCTTACATGTAATC
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATC
64570793 TCATCTCGGT
Statistics
Matches: 96, Mismatches: 18, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
42 36 0.38
43 58 0.60
44 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAATACG
Found at i:64578910 original size:44 final size:44
Alignment explanation
Indices: 64578843--64578929 Score: 156
Period size: 44 Copynumber: 2.0 Consensus size: 44
64578833 TAAACATTAG
* *
64578843 AATAAGCATGAAACCTTAGCAATAGGTAATAATTACTGAAATAA
1 AATAAGCATGAAACCTTAACAATAGGTAATAATTACTAAAATAA
64578887 AATAAGCATGAAACCTTAACAATAGGTAATAATTACTAAAATA
1 AATAAGCATGAAACCTTAACAATAGGTAATAATTACTAAAATA
64578930 CCCTTATGCA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.52, C:0.11, G:0.11, T:0.25
Consensus pattern (44 bp):
AATAAGCATGAAACCTTAACAATAGGTAATAATTACTAAAATAA
Found at i:64579216 original size:27 final size:26
Alignment explanation
Indices: 64579178--64579237 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
64579168 CCACATATAT
* *
64579178 ATATATGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
64579204 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
64579231 ATATCTG
1 ATATCTG
64579238 GCAGCCTCGC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.23, C:0.22, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:64584305 original size:44 final size:44
Alignment explanation
Indices: 64584238--64584324 Score: 156
Period size: 44 Copynumber: 2.0 Consensus size: 44
64584228 TAAACGTTAG
* *
64584238 AATAAGCATGAAACCTTAGCAATAGGTAATAATTACTGAAATAA
1 AATAAGCATGAAACCTTAACAATAGGTAATAATTACTAAAATAA
64584282 AATAAGCATGAAACCTTAACAATAGGTAATAATTACTAAAATA
1 AATAAGCATGAAACCTTAACAATAGGTAATAATTACTAAAATA
64584325 CCCTTATGCA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.52, C:0.11, G:0.11, T:0.25
Consensus pattern (44 bp):
AATAAGCATGAAACCTTAACAATAGGTAATAATTACTAAAATAA
Found at i:64584601 original size:70 final size:67
Alignment explanation
Indices: 64584464--64584604 Score: 167
Period size: 70 Copynumber: 2.1 Consensus size: 67
64584454 GAGGAAGTGC
* * * * *
64584464 TCTGGCAGCCTCGCTACAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCATAA
1 TCTGGCAGCCTCGCTACAATCTGGTGGCCTCGCCACATATATATGTTCTGGTGACCTAGCCACAA
64584529 TA
66 TA
* * *
64584531 TCTGGCAGCCTCGCTGCAAT-TGGTGGCTTCGCCACATATATATATATGTTCTGGTGGCCTAGCC
1 TCTGGCAGCCTCGCTACAATCTGGTGGCCTCGCCAC----ATATATATGTTCTGGTGACCTAGCC
64584595 ACAATA
62 ACAATA
64584601 TCTG
1 TCTG
64584605 TATCTGGTGA
Statistics
Matches: 62, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
66 14 0.23
67 19 0.31
70 29 0.47
ACGTcount: A:0.20, C:0.27, G:0.22, T:0.31
Consensus pattern (67 bp):
TCTGGCAGCCTCGCTACAATCTGGTGGCCTCGCCACATATATATGTTCTGGTGACCTAGCCACAA
TA
Found at i:64584610 original size:27 final size:26
Alignment explanation
Indices: 64584572--64584631 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
64584562 CCACATATAT
* *
64584572 ATATATGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
64584598 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
64584625 ATATCTG
1 ATATCTG
64584632 GCAGCCTCAC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.23, C:0.22, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:64587626 original size:46 final size:46
Alignment explanation
Indices: 64587570--64587737 Score: 180
Period size: 46 Copynumber: 3.6 Consensus size: 46
64587560 TGGTCGAGCA
* *
64587570 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAATG
* * * *
64587616 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTGGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAAT--G
* *
64587661 CATCCGAACCCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAATG
* * *
64587709 CCCGAGCTCGTTGAGTTGAGTCTGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
64587738 GCTTATGGGC
Statistics
Matches: 101, Mismatches: 14, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
43 7 0.07
45 3 0.03
46 54 0.53
47 28 0.28
48 3 0.03
50 6 0.06
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAATG
Found at i:64587726 original size:93 final size:93
Alignment explanation
Indices: 64587567--64587738 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
64587557 GGATGGTCGA
* * * * *
64587567 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACCCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
64587632 TGAGTCCGAGTTCGTGAGATGTAACTGG
66 TGAGTCCGAGTTCGTGAGATGTAACTGG
*
64587660 GCATCCGAACCCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACCCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
*
64587725 TGAGTCTGAGTTCG
66 TGAGTCCGAGTTCG
64587739 CTTATGGGCG
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACCCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTGG
Found at i:64590728 original size:15 final size:15
Alignment explanation
Indices: 64590693--64590761 Score: 81
Period size: 15 Copynumber: 4.7 Consensus size: 15
64590683 GTATCTTGGG
*
64590693 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
64590708 --TCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
64590721 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
*
64590736 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
64590751 TTTCTTTATTC
1 TTTCTTTATTC
64590762 GTTTTCTTGT
Statistics
Matches: 45, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
13 12 0.27
14 2 0.04
15 29 0.64
16 2 0.04
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:64593309 original size:93 final size:93
Alignment explanation
Indices: 64593150--64593321 Score: 227
Period size: 93 Copynumber: 1.8 Consensus size: 93
64593140 GGATGGTTGA
* * ** * * * *
64593150 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCTGAACTCGTTGAGT
1 GCATCCAAACCCGTTGAGTTGAGTCCGAGATCACGCATGAATGCAAACGCCCGAACTCGTTGAGT
64593215 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * *
64593243 GCATCCGAACCCGTTTAGTTGAGTCCGAGATCACGCATGAATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCAAACCCGTTGAGTTGAGTCCGAGATCACGCATGAATGCAAACGCCCGAACTCGTTGAGT
*
64593308 TGAGTTCGAGTTCG
66 TGAGTCCGAGTTCG
64593322 CTTATGGGCA
Statistics
Matches: 66, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
93 66 1.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (93 bp):
GCATCCAAACCCGTTGAGTTGAGTCCGAGATCACGCATGAATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:64600902 original size:40 final size:40
Alignment explanation
Indices: 64600808--64601030 Score: 249
Period size: 40 Copynumber: 5.6 Consensus size: 40
64600798 TATTCGAATG
*
64600808 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTA-GTGACT
* * * *
64600849 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
* * *
64600889 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* * *
64600929 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
*
64600969 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGAC-
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
* *
64601008 -CATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
64601031 CTTGTGCAAG
Statistics
Matches: 157, Mismatches: 20, Indels: 13
0.83 0.11 0.07
Matches are distributed among these distances:
38 20 0.13
39 1 0.01
40 106 0.68
41 29 0.18
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:64600988 original size:80 final size:79
Alignment explanation
Indices: 64600808--64601066 Score: 292
Period size: 80 Copynumber: 3.3 Consensus size: 79
64600798 TATTCGAATG
* * * *
64600808 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGA-TATATCCGGGCTAAGACCCGAAGGC
*
64600873 ATTCGTGCGAGTTGCT
64 ATTCGTGCGAGTCGCT
* * *
64600889 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAAACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGA-TATATCCGGGCTAAGACCCGAAGGCA
* *
64600954 TTTGTGCTAG-CGACT
65 TTCGTGCGAGTCG-CT
* ** *
64600969 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGA-CCATCCGGGCTAAGACCCGAAGGCCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATATATCCGGGCTAAGACCCGAAGGCAT
* * *
64601033 T-GTGCAAGTAGTT
66 TCGTGCGAGTCGCT
*
64601046 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
64601067 ATTACTTGAG
Statistics
Matches: 154, Mismatches: 22, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
76 14 0.09
77 13 0.08
78 24 0.16
79 1 0.01
80 70 0.45
81 32 0.21
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (79 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATATATCCGGGCTAAGACCCGAAGGCAT
TCGTGCGAGTCGCT
Found at i:64601056 original size:38 final size:41
Alignment explanation
Indices: 64600808--64601066 Score: 234
Period size: 40 Copynumber: 6.5 Consensus size: 41
64600798 TATTCGAATG
* * *
64600808 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGT-GACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AAGTAGACT
* * * * * *
64600849 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGACT
* * *
64600889 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-CGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGACT
* * *
64600929 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAG-CGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGACT
* * *
64600969 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGT-GAC-
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGACT
* * *
64601008 -CATCCGGGCTAAGACCCGAAGGC-CTTGTGCAAGTAG-TT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGACT
64601046 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
64601067 ATTACTTGAG
Statistics
Matches: 184, Mismatches: 27, Indels: 17
0.81 0.12 0.07
Matches are distributed among these distances:
37 9 0.05
38 35 0.19
39 5 0.03
40 108 0.59
41 27 0.15
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (41 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGACT
Found at i:64606060 original size:40 final size:40
Alignment explanation
Indices: 64605966--64606190 Score: 233
Period size: 40 Copynumber: 5.6 Consensus size: 40
64605956 TATTCAAATG
* * *
64605966 ATATCCGGGCTAAG-TCCCAAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTA-GCGACT
* * * *
64606007 ATAACCGGACTAAGATCCGAAGGCATTCGTG-TGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCT-AG-CGACT
* *
64606047 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGCGACT
* *
64606087 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGCGACT
* * *
64606127 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
* *
64606167 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
64606191 CTTGTGCAAG
Statistics
Matches: 157, Mismatches: 20, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
39 1 0.01
40 127 0.81
41 28 0.18
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGCGACT
Found at i:64606146 original size:80 final size:80
Alignment explanation
Indices: 64605966--64606190 Score: 283
Period size: 80 Copynumber: 2.8 Consensus size: 80
64605956 TATTCAAATG
* * * * *
64605966 ATATCCGGGCTAAGTCCCAAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGACCCGAAGGC
*
64606031 ATTCGTGTGAGTTGCT
65 ATTCGTGTGAGTCGCT
* * * *
64606047 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAAACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
*
64606112 TTTGTGCT-AG-CGACT
66 TTCGTG-TGAGTCG-CT
* * *
64606127 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGC
64606191 CTTGTGCAAG
Statistics
Matches: 124, Mismatches: 18, Indels: 5
0.84 0.12 0.03
Matches are distributed among these distances:
79 1 0.01
80 91 0.73
81 32 0.26
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGTGAGTCGCT
Found at i:64606180 original size:120 final size:121
Alignment explanation
Indices: 64605966--64606226 Score: 302
Period size: 120 Copynumber: 2.2 Consensus size: 121
64605956 TATTCAAATG
** * *
64605966 ATATCCGGGCTAAGTCCCAAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAAACCCAAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
* * *
64606031 ATTCGTGTGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
66 ATTCATGTGAGTTGCCACATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
* * *
64606087 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAAACCCAAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGG
* * * *
64606150 CATTTATGCT-AG-TGACCACATCCGGGCTAAGACCCGAAGGC-CTTGTGCAAG-TAGTT
65 CATTCATG-TGAGTTG-CCACATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGA-TT
*
64606206 ATATCC-GGCTAAATCCCAAAG
1 ATATCCGGGCTAAAACCCAAAG
64606227 ATTACTTGAG
Statistics
Matches: 120, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
118 14 0.12
119 19 0.16
120 56 0.47
121 31 0.26
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (121 bp):
ATATCCGGGCTAAAACCCAAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
ATTCATGTGAGTTGCCACATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
Found at i:64608573 original size:8 final size:8
Alignment explanation
Indices: 64608557--64608596 Score: 62
Period size: 8 Copynumber: 5.0 Consensus size: 8
64608547 ATGGGCTGAA
64608557 AACGGGCC
1 AACGGGCC
*
64608565 AATGGGCC
1 AACGGGCC
64608573 AACGGGCC
1 AACGGGCC
*
64608581 AATGGGCC
1 AACGGGCC
64608589 AACGGGCC
1 AACGGGCC
64608597 CATTTTGGTA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
8 28 1.00
ACGTcount: A:0.25, C:0.33, G:0.38, T:0.05
Consensus pattern (8 bp):
AACGGGCC
Found at i:64608578 original size:16 final size:16
Alignment explanation
Indices: 64608557--64608596 Score: 80
Period size: 16 Copynumber: 2.5 Consensus size: 16
64608547 ATGGGCTGAA
64608557 AACGGGCCAATGGGCC
1 AACGGGCCAATGGGCC
64608573 AACGGGCCAATGGGCC
1 AACGGGCCAATGGGCC
64608589 AACGGGCC
1 AACGGGCC
64608597 CATTTTGGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.25, C:0.33, G:0.38, T:0.05
Consensus pattern (16 bp):
AACGGGCCAATGGGCC
Found at i:64608979 original size:27 final size:27
Alignment explanation
Indices: 64608949--64609000 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
64608939 ATATATTTTT
*
64608949 TCTAGTGGCCTAGCCACAATATCTGTA
1 TCTAGTGACCTAGCCACAATATCTGTA
* * *
64608976 TCTAGTGACTTTGTCACAATATCTG
1 TCTAGTGACCTAGCCACAATATCTG
64609001 GCAGCCTCGC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.35
Consensus pattern (27 bp):
TCTAGTGACCTAGCCACAATATCTGTA
Found at i:64612039 original size:29 final size:29
Alignment explanation
Indices: 64612005--64612107 Score: 145
Period size: 29 Copynumber: 3.6 Consensus size: 29
64611995 TCATCAACCA
64612005 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGTACTTTAAACT
64612034 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGTACTTTAAACT
* * **
64612063 CGCACACTTAGTACCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGTACTTT-AAACT
*
64612092 CGCACACCTAGTGCCA
1 CGCACACTTAGTGCCA
64612108 ATCTCACAAC
Statistics
Matches: 67, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
28 3 0.04
29 64 0.96
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGTACTTTAAACT
Found at i:64620938 original size:24 final size:24
Alignment explanation
Indices: 64620911--64620980 Score: 106
Period size: 24 Copynumber: 2.9 Consensus size: 24
64620901 ATCATAGAAA
64620911 GTGTACAT-TGGCACTATGTGTGCG
1 GTGTA-ATATGGCACTATGTGTGCG
*
64620935 GTGTAGTATGGCACTATGTGTGCG
1 GTGTAATATGGCACTATGTGTGCG
*
64620959 GTGTAGTATGGCACTATGTGTG
1 GTGTAATATGGCACTATGTGTG
64620981 TGGAGTTGAT
Statistics
Matches: 44, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
23 1 0.02
24 43 0.98
ACGTcount: A:0.17, C:0.13, G:0.36, T:0.34
Consensus pattern (24 bp):
GTGTAATATGGCACTATGTGTGCG
Found at i:64626671 original size:28 final size:28
Alignment explanation
Indices: 64626640--64626794 Score: 116
Period size: 28 Copynumber: 5.5 Consensus size: 28
64626630 CTGACTGATT
64626640 TCGCACACATAGTGCTCGATTAAAGAAC
1 TCGCACACATAGTGCTCGATTAAAGAAC
* **
64626668 TCGCACACATAGTGCCTCAATT-ACCAA-
1 TCGCACACATAGTG-CTCGATTAAAGAAC
** * *
64626695 TCTAACACATAGTGTTCGATTGAAGAAC
1 TCGCACACATAGTGCTCGATTAAAGAAC
* * ** *
64626723 TCGCACACATAGTGCCTCAACTACTGATC
1 TCGCACACATAGTG-CTCGATTAAAGAAC
* * * *
64626752 TGGCACACATAGTGCTCGGTTGAAGAGC
1 TCGCACACATAGTGCTCGATTAAAGAAC
* *
64626780 TTGCACACACAGTGC
1 TCGCACACATAGTGC
64626795 CTTATAATTC
Statistics
Matches: 95, Mismatches: 28, Indels: 8
0.73 0.21 0.06
Matches are distributed among these distances:
26 5 0.05
27 15 0.16
28 49 0.52
29 26 0.27
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (28 bp):
TCGCACACATAGTGCTCGATTAAAGAAC
Found at i:64626787 original size:57 final size:56
Alignment explanation
Indices: 64626633--64626796 Score: 204
Period size: 55 Copynumber: 2.9 Consensus size: 56
64626623 ATGCCCACTG
* * *
64626633 ACTGATTTCGCACACATAGTGCTCGATTAAAGAACTCGCACACATAGTGCCTCAATT
1 ACTGATCT-GCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACT
** * *
64626690 ACCAATCT-AACACATAGTGTTCGATTGAAGAACTCGCACACATAGTGCCTCAACT
1 ACTGATCTGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACT
* * * *
64626745 ACTGATCTGGCACACATAGTGCTCGGTTGAAGAGCTTGCACACACAGTGCCT
1 ACTGATCT-GCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCT
64626797 TATAATTCCA
Statistics
Matches: 90, Mismatches: 15, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
55 49 0.54
57 41 0.46
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.24
Consensus pattern (56 bp):
ACTGATCTGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACT
Found at i:64626871 original size:40 final size:40
Alignment explanation
Indices: 64626804--64626959 Score: 262
Period size: 40 Copynumber: 3.9 Consensus size: 40
64626794 CCTTATAATT
* *
64626804 CCAGCACGAATGC-CTTCGAGG-TTTAGCCCGGATATATCA
1 CCAGCACGAATGCTCTTCG-GGACTTAGCCCGGATATAACA
*
64626843 CTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACA
64626883 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACA
64626923 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
64626960 TAACTCTCAA
Statistics
Matches: 111, Mismatches: 4, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
39 14 0.13
40 97 0.87
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACA
Found at i:64639485 original size:27 final size:27
Alignment explanation
Indices: 64639455--64639508 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
64639445 TCATACAACC
* *
64639455 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
64639482 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
64639509 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:64659306 original size:46 final size:46
Alignment explanation
Indices: 64659239--64659408 Score: 213
Period size: 46 Copynumber: 3.7 Consensus size: 46
64659229 TAACCCGCCC
*
64659239 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
64659285 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * * *
64659333 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
64659378 TAAGTGAACTCGGACTCAACTCAACGAGTTC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC
64659409 AGATGCTCAA
Statistics
Matches: 106, Mismatches: 9, Indels: 18
0.80 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 58 0.55
47 28 0.26
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:64659351 original size:93 final size:93
Alignment explanation
Indices: 64659244--64659414 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
64659234 CGCCCTAAGT
* *
64659244 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
64659309 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCAGATGCCTAGTTACATCTCAC
*
64659337 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
64659402 CGAGTTCAGATGC
66 CGAGTTCAGATGC
64659415 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCAGATGCCTAGTTACATCTCAC
Found at i:64659868 original size:30 final size:30
Alignment explanation
Indices: 64659834--64659893 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
64659824 ATTTAATACG
64659834 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
64659864 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
64659894 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:64666569 original size:19 final size:20
Alignment explanation
Indices: 64666545--64666582 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
64666535 GGTACCACCA
64666545 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
64666564 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
64666583 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:64668878 original size:27 final size:28
Alignment explanation
Indices: 64668848--64668909 Score: 67
Period size: 27 Copynumber: 2.3 Consensus size: 28
64668838 ATACACCTAG
* * *
64668848 ACCCCATAT-TGATGAAATGACTGTTAT
1 ACCCCATATCAGATAAAATGACTGATAT
*
64668875 ACCCC-TATCAGGTAAAATGACTGATAT
1 ACCCCATATCAGATAAAATGACTGATAT
64668902 A-CCCATAT
1 ACCCCATAT
64668910 GATATATATG
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
26 6 0.21
27 23 0.79
ACGTcount: A:0.35, C:0.23, G:0.13, T:0.29
Consensus pattern (28 bp):
ACCCCATATCAGATAAAATGACTGATAT
Found at i:64680422 original size:17 final size:17
Alignment explanation
Indices: 64680397--64680446 Score: 59
Period size: 16 Copynumber: 3.0 Consensus size: 17
64680387 GAGATAAAAT
*
64680397 TAAACTAAAATAAAGAA
1 TAAAATAAAATAAAGAA
64680414 TAAAATAAAATAACAG--
1 TAAAATAAAATAA-AGAA
*
64680430 TAAAAGAAAATAAAGAA
1 TAAAATAAAATAAAGAA
64680447 AAGAGGCGGA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
15 2 0.07
16 12 0.43
17 12 0.43
18 2 0.07
ACGTcount: A:0.72, C:0.04, G:0.08, T:0.16
Consensus pattern (17 bp):
TAAAATAAAATAAAGAA
Found at i:64681459 original size:13 final size:13
Alignment explanation
Indices: 64681441--64681471 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
64681431 GCTTAACACG
64681441 GCTGTATCGCACA
1 GCTGTATCGCACA
64681454 GCTGTATCGCACA
1 GCTGTATCGCACA
64681467 GCTGT
1 GCTGT
64681472 GGCTCTTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.19, C:0.29, G:0.26, T:0.26
Consensus pattern (13 bp):
GCTGTATCGCACA
Found at i:64689660 original size:21 final size:20
Alignment explanation
Indices: 64689632--64689672 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
64689622 CCCTACCAGG
*
64689632 TGCCCCACGCCCATGGCCAT
1 TGCCCCACGACCATGGCCAT
*
64689652 TGCCACCACGACCTTGGCCAT
1 TGCC-CCACGACCATGGCCAT
64689673 GACCTCTCGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.17, C:0.46, G:0.20, T:0.17
Consensus pattern (20 bp):
TGCCCCACGACCATGGCCAT
Found at i:64694171 original size:35 final size:35
Alignment explanation
Indices: 64694125--64694192 Score: 136
Period size: 35 Copynumber: 1.9 Consensus size: 35
64694115 TAGTGCGATC
64694125 ATAATTGGAGCATCAATCAATTTATCCTTTAAATT
1 ATAATTGGAGCATCAATCAATTTATCCTTTAAATT
64694160 ATAATTGGAGCATCAATCAATTTATCCTTTAAA
1 ATAATTGGAGCATCAATCAATTTATCCTTTAAA
64694193 GTATTAAACG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.38, C:0.15, G:0.09, T:0.38
Consensus pattern (35 bp):
ATAATTGGAGCATCAATCAATTTATCCTTTAAATT
Found at i:64700509 original size:28 final size:28
Alignment explanation
Indices: 64700469--64700528 Score: 79
Period size: 28 Copynumber: 2.1 Consensus size: 28
64700459 TTCTGTTGCT
*
64700469 TACTGAAATGGGCTA-AGGCCC-ACACTGA
1 TACTAAAATGGGCTATA-GCCCTA-ACTGA
64700497 TACTAAAATGGGCTATAGCCCTAACTGA
1 TACTAAAATGGGCTATAGCCCTAACTGA
64700525 TACT
1 TACT
64700529 GGACTGCCAC
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
28 27 0.93
29 2 0.07
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.23
Consensus pattern (28 bp):
TACTAAAATGGGCTATAGCCCTAACTGA
Found at i:64702917 original size:11 final size:11
Alignment explanation
Indices: 64702901--64702926 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
64702891 CGAAGCCCAC
64702901 ATCACAATAAT
1 ATCACAATAAT
64702912 ATCACAATAAT
1 ATCACAATAAT
64702923 ATCA
1 ATCA
64702927 TACATGCAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.54, C:0.19, G:0.00, T:0.27
Consensus pattern (11 bp):
ATCACAATAAT
Found at i:64703158 original size:22 final size:23
Alignment explanation
Indices: 64703122--64703181 Score: 63
Period size: 22 Copynumber: 2.7 Consensus size: 23
64703112 GCAAATACGT
64703122 TTGGCACACAA-CCATAATCT-GG
1 TTGGCACA-AAGCCATAATCTAGG
* * *
64703144 TTGGCACAGAGCCAT-TTGTAGG
1 TTGGCACAAAGCCATAATCTAGG
64703166 TTGGCACAAAGCCATA
1 TTGGCACAAAGCCATA
64703182 GTCAGAATAA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
21 3 0.10
22 28 0.90
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.23
Consensus pattern (23 bp):
TTGGCACAAAGCCATAATCTAGG
Found at i:64703719 original size:27 final size:26
Alignment explanation
Indices: 64703688--64703982 Score: 112
Period size: 27 Copynumber: 10.9 Consensus size: 26
64703678 GGTATTTCGA
*
64703688 TAATTTTGCAAACCAATGGTATTTTTG
1 TAATTTTGCAAATCAA-GGTATTTTTG
*
64703715 CAATTTTTG-AAAGTCAAAGGTATTTTTG
1 TAA-TTTTGCAAA-TC-AAGGTATTTTTG
*
64703743 TAATTTTGTAAATCAGAGGTATTTTTG
1 TAATTTTGCAAATCA-AGGTATTTTTG
* * * **
64703770 TAATTTTCCAAATTAAGGGTACTTCGG
1 TAATTTTGCAAATCAA-GGTATTTTTG
* * *
64703797 TAATTTT-CTAAATTAGGGGTATTTTGG
1 TAATTTTGC-AAATCA-AGGTATTTTTG
** * * *
64703824 TAATTTTATAAATTGAGGGTA-TTTCG
1 TAATTTTGCAAA-TCAAGGTATTTTTG
* * * *
64703850 ATAATTTTACAAGTCCATGGTATTTTGG
1 -TAATTTTGCAAAT-CAAGGTATTTTTG
* * * **
64703878 TAATTTTACAAGTAGAAGGTATTTCGG
1 TAATTTTGCAAAT-CAAGGTATTTTTG
** * *
64703905 TAATTTCACAAATCAGGGGTATTTTGG
1 TAATTTTGCAAATCA-AGGTATTTTTG
* * *
64703932 TAATTTTACAAA-CTAAGGGCATTTTGG
1 TAATTTTGCAAATC-AA-GGTATTTTTG
* *
64703959 TAATTTTGTAAACCAATGGTATTT
1 TAATTTTGCAAATCAA-GGTATTT
64703983 CAGTAATTCT
Statistics
Matches: 215, Mismatches: 36, Indels: 34
0.75 0.13 0.12
Matches are distributed among these distances:
26 10 0.05
27 175 0.81
28 28 0.13
29 2 0.01
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (26 bp):
TAATTTTGCAAATCAAGGTATTTTTG
Found at i:64703736 original size:28 final size:28
Alignment explanation
Indices: 64703691--64703776 Score: 104
Period size: 28 Copynumber: 3.1 Consensus size: 28
64703681 ATTTCGATAA
* * * *
64703691 TTTTGCAAACCAATGGTATTTTTGCAAT
1 TTTTGTAAATCAAAGGTATTTTTGTAAT
64703719 TTTTG-AAAGTCAAAGGTATTTTTGTAA-
1 TTTTGTAAA-TCAAAGGTATTTTTGTAAT
*
64703746 TTTTGTAAATCAGAGGTATTTTTGTAAT
1 TTTTGTAAATCAAAGGTATTTTTGTAAT
64703774 TTT
1 TTT
64703777 CCAAATTAAG
Statistics
Matches: 51, Mismatches: 4, Indels: 6
0.84 0.07 0.10
Matches are distributed among these distances:
27 25 0.49
28 26 0.51
ACGTcount: A:0.29, C:0.07, G:0.16, T:0.48
Consensus pattern (28 bp):
TTTTGTAAATCAAAGGTATTTTTGTAAT
Found at i:64703836 original size:81 final size:81
Alignment explanation
Indices: 64703678--64703970 Score: 238
Period size: 81 Copynumber: 3.6 Consensus size: 81
64703668 ACAAACCAAG
* ** * * *
64703678 GGTA-TTTCGATAATTTTGCAAACCAATGGTATTTTTGCAATTTTTGAAAGTCA-AAGGTATTTT
1 GGTATTTTCG-TAATTTTACAAATTAAGGGTATTTTGGTAATTTTT-AAAGT-AGAAGGTATTTT
* *
64703741 TGTAATTTTGTAAATCAGA
63 GGTAATTTTATAAATCAGA
* * * * * *
64703760 GGTATTTTTGTAATTTTCCAAATTAAGGGTACTTCGGTAATTTTCTAAATTAG-GGGTATTTTGG
1 GGTATTTTCGTAATTTTACAAATTAAGGGTATTTTGGTAATTTT-TAAAGTAGAAGGTATTTTGG
*
64703824 TAATTTTATAAAT-TGA
65 TAATTTTATAAATCAGA
* ** * *
64703840 GGGTA-TTTCGATAATTTTACAAGTCCATGGTATTTTGGTAA-TTTTACAAGTAGAAGGTATTTC
1 -GGTATTTTCG-TAATTTTACAAATTAAGGGTATTTTGGTAATTTTTA-AAGTAGAAGGTATTTT
* * *
64703903 GGTAATTTCACAAATCAGG
63 GGTAATTTTATAAATCAGA
* * *
64703922 GGTATTTTGGTAATTTTACAAACTAAGGGCATTTTGGTAATTTTGTAAA
1 GGTATTTTCGTAATTTTACAAATTAAGGGTATTTTGGTAATTTT-TAAA
64703971 CCAATGGTAT
Statistics
Matches: 164, Mismatches: 36, Indels: 22
0.74 0.16 0.10
Matches are distributed among these distances:
79 2 0.01
80 14 0.09
81 97 0.59
82 44 0.27
83 7 0.04
ACGTcount: A:0.30, C:0.08, G:0.19, T:0.42
Consensus pattern (81 bp):
GGTATTTTCGTAATTTTACAAATTAAGGGTATTTTGGTAATTTTTAAAGTAGAAGGTATTTTGGT
AATTTTATAAATCAGA
Found at i:64703990 original size:54 final size:54
Alignment explanation
Indices: 64703657--64703982 Score: 246
Period size: 54 Copynumber: 6.0 Consensus size: 54
64703647 CAAGGGTGTA
* * *
64703657 TTGGTAAATTTACAAACCAAGGGTATTTCGATAATTTTGCAAACCAATGGTATT
1 TTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTTGCAAACCAATGGTATT
* * ** * * ** * *
64703711 TTTGCAATTTTTGAAAGTCAAAGGTATTTTTGTAATTTTGTAAATCAGA-GGTATT
1 TTGGTAATTTTACAAACT-AAGGGTATTTCGGTAATTTTGCAAACCA-ATGGTATT
* * * * ** **
64703766 TTTGTAATTTTCCAAATTAAGGGTACTTCGGTAATTTT-CTAAATTAGGGGTATT
1 TTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTTGC-AAACCAATGGTATT
* * * * * *
64703820 TTGGTAATTTTATAAATTGAGGGTATTTCGATAATTTTACAAGTCC-ATGGTATT
1 TTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTTGCAA-ACCAATGGTATT
* * ** * **
64703874 TTGGTAATTTTAC-AAGTAGAAGGTATTTCGGTAATTTCACAAATCAGGGGTATT
1 TTGGTAATTTTACAAACTA-AGGGTATTTCGGTAATTTTGCAAACCAATGGTATT
* * *
64703928 TTGGTAATTTTACAAACTAAGGGCATTTTGGTAATTTTGTAAACCAATGGTATT
1 TTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTTGCAAACCAATGGTATT
64703982 T
1 T
64703983 CAGTAATTCT
Statistics
Matches: 208, Mismatches: 55, Indels: 18
0.74 0.20 0.06
Matches are distributed among these distances:
53 4 0.02
54 156 0.75
55 47 0.23
56 1 0.00
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (54 bp):
TTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTTGCAAACCAATGGTATT
Found at i:64704009 original size:27 final size:27
Alignment explanation
Indices: 64703979--64704043 Score: 112
Period size: 27 Copynumber: 2.4 Consensus size: 27
64703969 AACCAATGGT
64703979 ATTTCAGTAATTCTACCCTACAAGGGC
1 ATTTCAGTAATTCTACCCTACAAGGGC
* *
64704006 ATTTCAGTAATTCTATCCTATAAGGGC
1 ATTTCAGTAATTCTACCCTACAAGGGC
64704033 ATTTCAGTAAT
1 ATTTCAGTAAT
64704044 ACTAGCTTAC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (27 bp):
ATTTCAGTAATTCTACCCTACAAGGGC
Found at i:64705703 original size:39 final size:39
Alignment explanation
Indices: 64705660--64705817 Score: 208
Period size: 39 Copynumber: 4.1 Consensus size: 39
64705650 AAGATGTTTT
* * *
64705660 TGAGTATTGTGATATATGTTTAAAGGTTATGTGATTATA
1 TGAGTATTGTGACATATGCTTAAATGTTATGTGATTATA
* ** *
64705699 TGAGTATGGTGGTATATGCTTGAATGTTATGTGATTATA
1 TGAGTATTGTGACATATGCTTAAATGTTATGTGATTATA
* *
64705738 CGAGTATTGTGACATATGCTTAAATGTTATGAGATTATA
1 TGAGTATTGTGACATATGCTTAAATGTTATGTGATTATA
** *
64705777 TGAGTATTGTGACATATGCTTGTATGTTAGGTGATTATA
1 TGAGTATTGTGACATATGCTTAAATGTTATGTGATTATA
64705816 TG
1 TG
64705818 TGTAATATGG
Statistics
Matches: 103, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 103 1.00
ACGTcount: A:0.28, C:0.04, G:0.25, T:0.43
Consensus pattern (39 bp):
TGAGTATTGTGACATATGCTTAAATGTTATGTGATTATA
Found at i:64705746 original size:78 final size:78
Alignment explanation
Indices: 64705661--64705815 Score: 229
Period size: 78 Copynumber: 2.0 Consensus size: 78
64705651 AGATGTTTTT
* * * **
64705661 GAGTATTGTGATATATGTTTAAAGGTTATGTGATTATATGAGTATGGTGGTATATGCTTGAATGT
1 GAGTATTGTGACATATGCTTAAAGGTTATGAGATTATATGAGTATGGTGACATATGCTTGAATGT
*
64705726 TATGTGATTATAC
66 TAGGTGATTATAC
* * *
64705739 GAGTATTGTGACATATGCTTAAATGTTATGAGATTATATGAGTATTGTGACATATGCTTGTATGT
1 GAGTATTGTGACATATGCTTAAAGGTTATGAGATTATATGAGTATGGTGACATATGCTTGAATGT
64705804 TAGGTGATTATA
66 TAGGTGATTATA
64705816 TGTGTAATAT
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
78 68 1.00
ACGTcount: A:0.29, C:0.04, G:0.25, T:0.43
Consensus pattern (78 bp):
GAGTATTGTGACATATGCTTAAAGGTTATGAGATTATATGAGTATGGTGACATATGCTTGAATGT
TAGGTGATTATAC
Found at i:64705838 original size:78 final size:78
Alignment explanation
Indices: 64705679--64705839 Score: 196
Period size: 78 Copynumber: 2.1 Consensus size: 78
64705669 TGATATATGT
* ** *
64705679 TTAAAGGTTATGTGATTATATGAGTATGGTGGTATATGCTTGAATGTTATGTGATTATACGAGTA
1 TTAAAGGTTATGAGATTATATGAGTATGGTGACATATGCTTGAATGTTAGGTGATTATACGAGTA
* * *
64705744 TTGTGACATATGC
66 ATATGACATATAC
* * * * *
64705757 TTAAATGTTATGAGATTATATGAGTATTGTGACATATGCTTGTATGTTAGGTGATTATATGTGTA
1 TTAAAGGTTATGAGATTATATGAGTATGGTGACATATGCTTGAATGTTAGGTGATTATACGAGTA
**
64705822 ATATGGTATATAC
66 ATATGACATATAC
64705835 TTAAA
1 TTAAA
64705840 AGTGAATATG
Statistics
Matches: 69, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
78 69 1.00
ACGTcount: A:0.30, C:0.04, G:0.23, T:0.42
Consensus pattern (78 bp):
TTAAAGGTTATGAGATTATATGAGTATGGTGACATATGCTTGAATGTTAGGTGATTATACGAGTA
ATATGACATATAC
Found at i:64708017 original size:30 final size:29
Alignment explanation
Indices: 64707956--64708046 Score: 121
Period size: 30 Copynumber: 3.1 Consensus size: 29
64707946 CAAATACCTG
* *
64707956 TATATGGCCAACTAGGCCCAA-TCACATT
1 TATATGGCCCATTAGGCCCAATTCACATT
* *
64707984 TATATGGCCCATTAGTCCCAAATTCAAATT
1 TATATGGCCCATTAGGCCC-AATTCACATT
*
64708014 TATATGGCCCATCAGGCCCAATTCACATT
1 TATATGGCCCATTAGGCCCAATTCACATT
64708043 TATA
1 TATA
64708047 GTCATGCTCA
Statistics
Matches: 54, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
28 16 0.30
29 15 0.28
30 23 0.43
ACGTcount: A:0.32, C:0.26, G:0.12, T:0.30
Consensus pattern (29 bp):
TATATGGCCCATTAGGCCCAATTCACATT
Found at i:64710687 original size:51 final size:51
Alignment explanation
Indices: 64710619--64710727 Score: 146
Period size: 51 Copynumber: 2.1 Consensus size: 51
64710609 GCACACGGTT
* * * *
64710619 GTGTGTCATTAAAATTTTAAGTGTAAGTTTCACACGGTCTATGACACGACC
1 GTGTGTCATTAAAATTTTAAGTGCAAGTTTCACAAGGTCTAAGACACAACC
** *
64710670 GTGTGTCATTAAAATTTTTTGTGCAGGTTTCACAAGGTCTAAGACACAACC
1 GTGTGTCATTAAAATTTTAAGTGCAAGTTTCACAAGGTCTAAGACACAACC
*
64710721 ATGTGTC
1 GTGTGTC
64710728 TCAAAATAGT
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.34
Consensus pattern (51 bp):
GTGTGTCATTAAAATTTTAAGTGCAAGTTTCACAAGGTCTAAGACACAACC
Found at i:64717335 original size:34 final size:34
Alignment explanation
Indices: 64717289--64717378 Score: 103
Period size: 34 Copynumber: 2.6 Consensus size: 34
64717279 TTGAATAGTC
** *
64717289 TGGG-CTTAAGCCCATATCAGTCGCGGTATCAGTG
1 TGGGCCTT-AGCCCATATCAGTAACAGTATCAGTG
64717323 TGGGCCTTAGCCCA-ATACAGTAACAGTATCAGTG
1 TGGGCCTTAGCCCATAT-CAGTAACAGTATCAGTG
* *
64717357 TGGGCCTCAGCCCATTTCAGTA
1 TGGGCCTTAGCCCATATCAGTA
64717379 TAGTACCAGA
Statistics
Matches: 48, Mismatches: 5, Indels: 6
0.81 0.08 0.10
Matches are distributed among these distances:
33 2 0.04
34 42 0.88
35 4 0.08
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.26
Consensus pattern (34 bp):
TGGGCCTTAGCCCATATCAGTAACAGTATCAGTG
Found at i:64724553 original size:29 final size:28
Alignment explanation
Indices: 64724502--64724567 Score: 71
Period size: 29 Copynumber: 2.3 Consensus size: 28
64724492 CAAAGTGATT
*
64724502 TTGAGTAAAAATGCATATTAGGGAG-TAAA
1 TTGAG-AAAAATGCAAATTAGGG-GTTAAA
*
64724531 TTGAGAAAAATGTAAATTGAGGGGTTAAA
1 TTGAGAAAAATGCAAATT-AGGGGTTAAA
*
64724560 TTGTGAAA
1 TTGAGAAA
64724568 TAGATGAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
28 12 0.38
29 20 0.62
ACGTcount: A:0.44, C:0.02, G:0.26, T:0.29
Consensus pattern (28 bp):
TTGAGAAAAATGCAAATTAGGGGTTAAA
Found at i:64725139 original size:43 final size:43
Alignment explanation
Indices: 64725049--64725200 Score: 130
Period size: 43 Copynumber: 3.5 Consensus size: 43
64725039 ATCGAGATGA
* * * *
64725049 GATTACTTGTAAGACCATGTCTAGGAATTTGGCATTGTATTGT
1 GATTACGTGTAAGACCATGTCTAGGAATTTGGCATCGTAATGC
*
64725092 GATTACGTGTAAGACCATGTCTGGGACA-TTGGCATCGTTAAT-C
1 GATTACGTGTAAGACCATGTCTAGGA-ATTTGGCATCG-TAATGC
* * * ** *
64725135 GATTACGTGTAAGACCCTATCTAGTAAAATGGCATCG-ATATGT
1 GATTACGTGTAAGACCATGTCTAGGAATTTGGCATCGTA-ATGC
* * *
64725178 GATAACATGTAAGACCATATCTA
1 GATTACGTGTAAGACCATGTCTA
64725201 AGATATAGCA
Statistics
Matches: 90, Mismatches: 14, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
41 1 0.01
42 3 0.03
43 82 0.91
44 4 0.04
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.32
Consensus pattern (43 bp):
GATTACGTGTAAGACCATGTCTAGGAATTTGGCATCGTAATGC
Found at i:64727757 original size:40 final size:40
Alignment explanation
Indices: 64727695--64727911 Score: 255
Period size: 40 Copynumber: 5.5 Consensus size: 40
64727685 AAGCCAAGTA
* * *
64727695 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACGAATG
* *
64727734 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
* *
64727774 CCTTCGGGACTTAGCCCGGACATAATAACTCGCACGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
* * *
64727814 CCTTCGGGAATTAGCCCGGGTATAATAACTCGCAC-AATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAA-TG
* * *
64727854 CCTTCGGG-CTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACGAATG
64727893 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
64727912 TTATCATCCG
Statistics
Matches: 155, Mismatches: 17, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
38 1 0.01
39 43 0.28
40 111 0.72
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
Found at i:64735874 original size:40 final size:40
Alignment explanation
Indices: 64735812--64736028 Score: 237
Period size: 40 Copynumber: 5.5 Consensus size: 40
64735802 AAGCCAAGTA
* * *
64735812 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACGAATG
* *
64735851 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
* * *
64735891 CCTTCGGGACTTAGCCCAGACATAATAACTCGCACGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
* * * *
64735931 CCTTCGGGAATTAGCCCGGGTATAATAACTCGCAC-AATTA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAA-TG
* * *
64735971 CCTTCGGG-CTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACGAATG
64736010 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
64736029 TTATCATCCG
Statistics
Matches: 151, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
38 1 0.01
39 42 0.28
40 108 0.72
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
Found at i:64736411 original size:19 final size:19
Alignment explanation
Indices: 64736387--64736428 Score: 84
Period size: 19 Copynumber: 2.2 Consensus size: 19
64736377 ACTTTTTCCT
64736387 TCCCTTTATCGGATTTAGA
1 TCCCTTTATCGGATTTAGA
64736406 TCCCTTTATCGGATTTAGA
1 TCCCTTTATCGGATTTAGA
64736425 TCCC
1 TCCC
64736429 CTTCGCTCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.19, C:0.26, G:0.14, T:0.40
Consensus pattern (19 bp):
TCCCTTTATCGGATTTAGA
Found at i:64749628 original size:43 final size:42
Alignment explanation
Indices: 64749566--64749655 Score: 162
Period size: 43 Copynumber: 2.1 Consensus size: 42
64749556 TTCGTGAGAT
64749566 ATGTGGCATCCGAGCTCGTTGAGAGGTCCGAGTTCATTATGG
1 ATGTGGCATCCGAGCTCGTTGAGAGGTCCGAGTTCATTATGG
*
64749608 ATGTGAGCATCCGAGCTCGTTGAGAGGTCTGAGTTCATTATGG
1 ATGTG-GCATCCGAGCTCGTTGAGAGGTCCGAGTTCATTATGG
64749651 ATGTG
1 ATGTG
64749656 TTATATGTTA
Statistics
Matches: 46, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
42 5 0.11
43 41 0.89
ACGTcount: A:0.20, C:0.17, G:0.33, T:0.30
Consensus pattern (42 bp):
ATGTGGCATCCGAGCTCGTTGAGAGGTCCGAGTTCATTATGG
Found at i:64751877 original size:46 final size:46
Alignment explanation
Indices: 64751812--64751987 Score: 158
Period size: 46 Copynumber: 3.8 Consensus size: 46
64751802 TAACTAGGCA
* *
64751812 TCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATACGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACG
* * * * * * *
64751858 TCCGAACTCGTTGAGTTGAGTCCTAGTTC-GTGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATACGA-ACG
* * *
64751905 TCCGAGCTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACG
* * * * *
64751951 CCCGAGCTCATTGAGTTGAGTGCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
64751988 GCGGGTTACA
Statistics
Matches: 101, Mismatches: 24, Indels: 10
0.75 0.18 0.07
Matches are distributed among these distances:
45 1 0.01
46 67 0.66
47 32 0.32
48 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACG
Found at i:64751931 original size:93 final size:93
Alignment explanation
Indices: 64751768--64751980 Score: 318
Period size: 93 Copynumber: 2.3 Consensus size: 93
64751758 TTGGGCATCT
* * *
64751768 GAACTCGTTGAGTTGAATCCGAGTTTGTGAGATGTAACTAGGCATCCGAACTCGTTGAGTTGAGT
1 GAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCGAACTCGTTGAGTTGAGC
* * *
64751833 TCGAGTTCACTTATGGATACGAATGTCC
66 CCGAGTTCACTTATGGATACGAACGCCC
* *
64751861 GAACTCGTTGAGTTGAGTCCTAGTTCGTGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTGAGC
1 GAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCGAACTCGTTGAGTTGAGC
*
64751926 CCGAGTTCACTTATGGATGCGAACGCCC
66 CCGAGTTCACTTATGGATACGAACGCCC
* * *
64751954 GAGCTCATTGAGTTGAGTGCGAGTTCG
1 GAACTCGTTGAGTTGAGTCCGAGTTCG
64751981 CTTATGGGCG
Statistics
Matches: 107, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 107 1.00
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (93 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCGAACTCGTTGAGTTGAGC
CCGAGTTCACTTATGGATACGAACGCCC
Found at i:64751933 original size:47 final size:47
Alignment explanation
Indices: 64751761--64751933 Score: 183
Period size: 47 Copynumber: 3.7 Consensus size: 47
64751751 TGGATATTTG
* * *
64751761 GGCATCTGAACTCGTTGAGTTGAATCCGAGTTTGTGAGATGTAACTA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTA
* * * *
64751808 GGCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACT--TATG-GA-TA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAGATGTAACTA
* * *
64751852 CGAATGTCCGAACTCGTTGAGTTGAGTCCTAGTTCGTGAGATGTAACTA
1 GGCA--TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTA
* *
64751901 GGCATCCGAGCTCGTTGAGTTGAGCCCGAGTTC
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTC
64751934 ACTTATGGAT
Statistics
Matches: 100, Mismatches: 19, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
44 4 0.04
45 2 0.02
46 30 0.30
47 58 0.58
48 2 0.02
49 4 0.04
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (47 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:64753707 original size:28 final size:29
Alignment explanation
Indices: 64753667--64753721 Score: 85
Period size: 28 Copynumber: 1.9 Consensus size: 29
64753657 CATGGGCGAT
64753667 GACACGGGCGTGT-CTAGGCCGTGTGAGG
1 GACACGGGCGTGTGCTAGGCCGTGTGAGG
* *
64753695 GACATGGGCGTGTGCTCGGCCGTGTGA
1 GACACGGGCGTGTGCTAGGCCGTGTGA
64753722 AAACCTCTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 12 0.50
29 12 0.50
ACGTcount: A:0.13, C:0.22, G:0.45, T:0.20
Consensus pattern (29 bp):
GACACGGGCGTGTGCTAGGCCGTGTGAGG
Found at i:64761001 original size:46 final size:44
Alignment explanation
Indices: 64760897--64761111 Score: 164
Period size: 46 Copynumber: 4.7 Consensus size: 44
64760887 AGATTCGTGT
* * ** * *
64760897 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTATTGAGACGAGG
1 GCCAGTGTAAGA-CATGTCTAGGACAT-GCATCAG-CCT-AGATGAGA
*
64760945 GCTAGTGTAAGACATGTCTAGGACATGCATCAGCCATAGTATGAGA
1 GCCAGTGTAAGACATGTCTAGGACATGCATCAGCC-TAG-ATGAGA
* **
64760991 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATGTTA
1 GCCAGTGTAAGACATGTCTAGGACATGCATCAGCCT--AGATGAGA
* * * * * *
64761037 GCCACTGTCAGACATGTCTGGGACATGCGTC-GGCTACGA-GATGT
1 GCCAGTGTAAGACATGTCTAGGACATGCATCAGCCTA-GATGA-GA
* *
64761081 GCTAGTGTAAGACATGTTTAGGACATGCATC
1 GCCAGTGTAAGACATGTCTAGGACATGCATC
64761112 GGCACAGTTA
Statistics
Matches: 137, Mismatches: 24, Indels: 16
0.77 0.14 0.09
Matches are distributed among these distances:
43 2 0.01
44 27 0.20
45 6 0.04
46 76 0.55
47 15 0.11
48 11 0.08
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.24
Consensus pattern (44 bp):
GCCAGTGTAAGACATGTCTAGGACATGCATCAGCCTAGATGAGA
Found at i:64761151 original size:46 final size:44
Alignment explanation
Indices: 64760894--64761151 Score: 152
Period size: 46 Copynumber: 5.6 Consensus size: 44
64760884 ATGAGATTCG
* *
64760894 TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-TATTGAGACGA
1 TGTGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTA---CGAC-A
* * * *
64760943 -GGGCTAGTGTAAGACATGTCTAGGACATGCATCAGCCATA-G-TA
1 TGTGCTAGTGTAAGACATGTCTGGGACATGCATC-GGC-TACGACA
* * * *
64760986 TGAGAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCT-CGAGA
1 T--GTGCTAGTGTAAGACATGTCTGGGACATGCATC-GGCTACGACA
* * * * *
64761032 TGTTAGCCACTGTCAGACATGTCTGGGACATGCGTCGGCTACGAGA
1 TG-T-GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACGACA
* *
64761078 TGTGCTAGTGTAAGACATGTTTAGGACATGCATCGGC-ACAGTTACA
1 TGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTAC-G--ACA
*
64761124 TGTG-TCAGTGTAAGACCTGTCTGGGACA
1 TGTGCT-AGTGTAAGACATGTCTGGGACA
64761152 CGTCATTGAC
Statistics
Matches: 170, Mismatches: 24, Indels: 33
0.75 0.11 0.15
Matches are distributed among these distances:
43 3 0.02
44 30 0.18
45 8 0.05
46 101 0.59
47 14 0.08
48 12 0.07
49 2 0.01
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (44 bp):
TGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACGACA
Found at i:64765276 original size:37 final size:38
Alignment explanation
Indices: 64765235--64765309 Score: 134
Period size: 38 Copynumber: 2.0 Consensus size: 38
64765225 TTCATCCTTT
64765235 TTCATTTCTTTTGGCCG-AAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
*
64765272 TTCATTTCTTTTGGCTGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
64765310 GGAGTTCTTG
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
37 16 0.44
38 20 0.56
ACGTcount: A:0.31, C:0.12, G:0.24, T:0.33
Consensus pattern (38 bp):
TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
Found at i:64765318 original size:37 final size:37
Alignment explanation
Indices: 64765240--64765318 Score: 106
Period size: 38 Copynumber: 2.1 Consensus size: 37
64765230 CCTTTTTCAT
* *
64765240 TTCTTTTGGCCGAAATTCTAAGGAAGGAGGAATTCAT
1 TTCTTTTGGCCGAAATTCTAAGGAAGGAGGAATGCAG
* *
64765277 TTCTTTTGGCTGAAAATTCTAAGGAAGGAGGAA-GGAG
1 TTCTTTTGGCCG-AAATTCTAAGGAAGGAGGAATGCAG
64765314 TTCTT
1 TTCTT
64765319 GCTTCATGTT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 17 0.46
38 20 0.54
ACGTcount: A:0.29, C:0.11, G:0.27, T:0.33
Consensus pattern (37 bp):
TTCTTTTGGCCGAAATTCTAAGGAAGGAGGAATGCAG
Found at i:64766588 original size:40 final size:40
Alignment explanation
Indices: 64766494--64766638 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
64766484 TACTCGAATG
* *
64766494 ATATCCAGGCTAAGTCCCGAAGGCTTTTATGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCT-AGCGACT
* * *
64766535 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGCGACT
* *
64766575 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGCGACT
* *
64766615 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
64766639 CTTGTGCGAG
Statistics
Matches: 90, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.69
41 26 0.29
42 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.25, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGCGACT
Found at i:64771754 original size:40 final size:40
Alignment explanation
Indices: 64771710--64771886 Score: 302
Period size: 40 Copynumber: 4.4 Consensus size: 40
64771700 GGCTCGGATG
*
64771710 TAATAACCAGCACGAATGCCTTCGGGACTTAACCCGGTTA
1 TAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGTTA
*
64771750 TAATAACCCGCACGAATGCCTTCGGGACTTAGCCCGGTTA
1 TAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGTTA
*
64771790 TAATAACCCGCACGAATGCCTTCGGGACTT-ACCTCGATTA
1 TAATAACCCGCACGAATGCCTTCGGGACTTAACC-CGGTTA
64771830 TAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGTTA
1 TAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGTTA
*
64771870 CAATAACCCGCACGAAT
1 TAATAACCCGCACGAAT
64771887 ACTATGCACA
Statistics
Matches: 129, Mismatches: 6, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
39 2 0.02
40 124 0.96
41 3 0.02
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.22
Consensus pattern (40 bp):
TAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGTTA
Found at i:64774107 original size:8 final size:8
Alignment explanation
Indices: 64774094--64774118 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
64774084 CAAAAGTGTC
64774094 AAAATGTG
1 AAAATGTG
64774102 AAAATGTG
1 AAAATGTG
64774110 AAAATGTG
1 AAAATGTG
64774118 A
1 A
64774119 GGGCTAGTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.24, T:0.24
Consensus pattern (8 bp):
AAAATGTG
Found at i:64774535 original size:43 final size:42
Alignment explanation
Indices: 64774487--64774585 Score: 117
Period size: 44 Copynumber: 2.3 Consensus size: 42
64774477 ATCCGATATG
*
64774487 TGTTTTCGTGTAAAACCACGTCTGGGACATTGGCATCGAATTC
1 TGTTTTCGTGTAAAACCACGTCTGGGACATCGGCATCGAA-TC
* * * *
64774530 TGTTTTATGTGTAAGACCATGTCTGGGACATCGGCATCGTATC
1 TGTTTT-CGTGTAAAACCACGTCTGGGACATCGGCATCGAATC
**
64774573 TAATTTCGTGTAA
1 TGTTTTCGTGTAA
64774586 GACCTTGTCT
Statistics
Matches: 47, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
42 6 0.13
43 12 0.26
44 29 0.62
ACGTcount: A:0.23, C:0.18, G:0.23, T:0.35
Consensus pattern (42 bp):
TGTTTTCGTGTAAAACCACGTCTGGGACATCGGCATCGAATC
Found at i:64775247 original size:25 final size:23
Alignment explanation
Indices: 64775198--64775250 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 23
64775188 TTTGGCTTGA
*
64775198 TTATGGATAGGTTTATGAATGAG
1 TTATGGATAAGTTTATGAATGAG
64775221 TTATGGTATAAGTTATATG-ATGAAG
1 TTATGG-ATAAGTT-TATGAATG-AG
64775246 TTATG
1 TTATG
64775251 TTTATGACAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
23 6 0.23
24 9 0.35
25 11 0.42
ACGTcount: A:0.32, C:0.00, G:0.26, T:0.42
Consensus pattern (23 bp):
TTATGGATAAGTTTATGAATGAG
Found at i:64778392 original size:47 final size:47
Alignment explanation
Indices: 64778294--64778505 Score: 170
Period size: 47 Copynumber: 4.5 Consensus size: 47
64778284 GTGCCACTGT
* * * * **
64778294 CATGTCCCAGACATGGTCTTACACTGGCTCCTATCTC-AAGTTGATGC
1 CATGTCCCAGACATGGTCTTACACTGACTTC-GTCTCGTAGCCGATGC
* *
64778341 CATGTCCCAAACATGGTCTTACACTGACTATCTTCTCGTAGCCGATG-
1 CATGTCCCAGACATGGTCTTACACTGACT-TCGTCTCGTAGCCGATGC
* * * *
64778388 CATGTCCCTGACAT-GTCTTACTCTGGCTTACGTCTCG-AGGCCGGTG-
1 CATGTCCCAGACATGGTCTTACACTGACTT-CGTCTCGTA-GCCGATGC
* *
64778434 CATGTCCTAGACAT-GTCTTACACTAGCAC-TCGTCTCGATA-CCAATGC
1 CATGTCCCAGACATGGTCTTACACT-G-ACTTCGTCTCG-TAGCCGATGC
*
64778481 CATGTCCCAGATATGGTCTTACACT
1 CATGTCCCAGACATGGTCTTACACT
64778506 AGCTCTCAAA
Statistics
Matches: 134, Mismatches: 21, Indels: 19
0.77 0.12 0.11
Matches are distributed among these distances:
45 2 0.01
46 56 0.42
47 57 0.43
48 19 0.14
ACGTcount: A:0.21, C:0.30, G:0.19, T:0.30
Consensus pattern (47 bp):
CATGTCCCAGACATGGTCTTACACTGACTTCGTCTCGTAGCCGATGC
Found at i:64778468 original size:46 final size:45
Alignment explanation
Indices: 64778385--64778554 Score: 146
Period size: 46 Copynumber: 3.7 Consensus size: 45
64778375 CTCGTAGCCG
* * * *
64778385 ATGCATGTCCCT-GACATGTCTTACTCTGGCTTACGTCTCGAGGCCG
1 ATGCATGT-CCTAGACATGTCTTACACTAGCCT-CGTCTCGAGGCCA
* **
64778431 GTGCATGTCCTAGACATGTCTTACACTAGCACTCGTCTCGATACCA
1 ATGCATGTCCTAGACATGTCTTACACTAGC-CTCGTCTCGAGGCCA
* * *** *
64778477 ATGCCATGTCCCAGATATGGTCTTACACTAGCTCTCAAAAT-GTGGCCA
1 ATG-CATGTCCTAGACAT-GTCTTACACTAGC-CTC-GTCTCGAGGCCA
64778525 ATGCATGTCCTAGACATGTCTTACACTAGC
1 ATGCATGTCCTAGACATGTCTTACACTAGC
64778555 TCACAATAAC
Statistics
Matches: 100, Mismatches: 19, Indels: 10
0.78 0.15 0.08
Matches are distributed among these distances:
45 3 0.03
46 48 0.48
47 25 0.25
48 23 0.23
49 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (45 bp):
ATGCATGTCCTAGACATGTCTTACACTAGCCTCGTCTCGAGGCCA
Found at i:64784136 original size:32 final size:32
Alignment explanation
Indices: 64784095--64784157 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
64784085 TAAGTTTGTA
64784095 AGGGTTTATGGGTAACATGAAGGCTTGGAAAT
1 AGGGTTTATGGGTAACATGAAGGCTTGGAAAT
*
64784127 AGGGTTTATGGGTAACATGCAGGCTTGGAAA
1 AGGGTTTATGGGTAACATGAAGGCTTGGAAA
64784158 ATAGCCTAAG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.30, C:0.08, G:0.35, T:0.27
Consensus pattern (32 bp):
AGGGTTTATGGGTAACATGAAGGCTTGGAAAT
Found at i:64787222 original size:69 final size:67
Alignment explanation
Indices: 64787145--64787279 Score: 180
Period size: 67 Copynumber: 2.0 Consensus size: 67
64787135 CACCAAATAT
* * * *
64787145 AGATATTGTGGCTAGGCCACCAGAACAGATATATATGTGGCGAAGCCACTAGATTGCAGCGAGGC
1 AGATATTGTGACGAAGCCACCAGAACAG--ATATATGTGGCGAAGCCACCAGATTGCAGCGAGGC
64787210 TGCC
64 TGCC
* * * *
64787214 AGATATTGTGACGAAGTCACTAGATCAGATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTG
1 AGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTGCAGCGAGGCTG
64787279 C
66 C
64787280 TAGAACGCTT
Statistics
Matches: 58, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
67 36 0.62
69 22 0.38
ACGTcount: A:0.29, C:0.21, G:0.30, T:0.21
Consensus pattern (67 bp):
AGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTGCAGCGAGGCTG
CC
Found at i:64787265 original size:27 final size:26
Alignment explanation
Indices: 64787213--64787265 Score: 61
Period size: 27 Copynumber: 2.0 Consensus size: 26
64787203 GCGAGGCTGC
* *
64787213 CAGATATTGTGACGAAGTCACTAGAT
1 CAGATATTGTGACGAAGCCACCAGAT
* *
64787239 CAGATATATGTGGCGAGGCCACCAGAT
1 CAGATAT-TGTGACGAAGCCACCAGAT
64787266 TGCAGCGAGG
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.32, C:0.19, G:0.26, T:0.23
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAT
Found at i:64792432 original size:46 final size:46
Alignment explanation
Indices: 64792260--64792432 Score: 174
Period size: 46 Copynumber: 3.7 Consensus size: 46
64792250 AACCCGCCCC
* * * *
64792260 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* * *
64792306 TAAGTGAACTCAGACTCAACTCAACGATTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* * *
64792354 TCA-CGAAATCAGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
64792399 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
64792433 TGCTCAACCA
Statistics
Matches: 101, Mismatches: 17, Indels: 18
0.74 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 57 0.56
47 27 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:64792889 original size:30 final size:30
Alignment explanation
Indices: 64792855--64792914 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
64792845 ATTTAATACG
64792855 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
64792885 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
64792915 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:64805021 original size:34 final size:33
Alignment explanation
Indices: 64804965--64805029 Score: 85
Period size: 34 Copynumber: 1.9 Consensus size: 33
64804955 GTATGCATTT
** *
64804965 CTGATACTGTACTGAATTGGGCTAAGTCCCAGA
1 CTGATACTGTACTGAAGCGGGCTAAGGCCCAGA
*
64804998 CTGATACTGCTACTGTAGCGGGCTAAGGCCCA
1 CTGATACTG-TACTGAAGCGGGCTAAGGCCCA
64805030 CACTAATATT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
33 9 0.33
34 18 0.67
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.25
Consensus pattern (33 bp):
CTGATACTGTACTGAAGCGGGCTAAGGCCCAGA
Found at i:64807499 original size:12 final size:12
Alignment explanation
Indices: 64807484--64807513 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
64807474 ATGTTATAGA
*
64807484 GTATGTTTGAAT
1 GTATGATTGAAT
64807496 GTATGATTGAAT
1 GTATGATTGAAT
64807508 GTATGA
1 GTATGA
64807514 GTGATTGTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.30, C:0.00, G:0.27, T:0.43
Consensus pattern (12 bp):
GTATGATTGAAT
Found at i:64818791 original size:23 final size:24
Alignment explanation
Indices: 64818743--64818792 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
64818733 GATATATCAA
*
64818743 CTCGTAAGAGCTTACTGTTTTCAG
1 CTCGTAAGAGCTTACCGTTTTCAG
64818767 CTCGTCAA-AGCTTACCG-TTTCAG
1 CTCGT-AAGAGCTTACCGTTTTCAG
64818790 CTC
1 CTC
64818793 AATAGAGCTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
23 9 0.38
24 13 0.54
25 2 0.08
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (24 bp):
CTCGTAAGAGCTTACCGTTTTCAG
Found at i:64818801 original size:23 final size:24
Alignment explanation
Indices: 64818749--64818804 Score: 62
Period size: 23 Copynumber: 2.4 Consensus size: 24
64818739 TCAACTCGTA
* *
64818749 AGAGCTTACTGTTTTCAGCTCGTC
1 AGAGCTTACCGTTTTCAGCTCATC
*
64818773 AAAGCTTACCG-TTTCAGCTCAAT-
1 AGAGCTTACCGTTTTCAGCTC-ATC
64818796 AGAGCTTAC
1 AGAGCTTAC
64818805 TATCCATCAT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
23 17 0.63
24 10 0.37
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (24 bp):
AGAGCTTACCGTTTTCAGCTCATC
Found at i:64821973 original size:27 final size:26
Alignment explanation
Indices: 64821553--64822352 Score: 272
Period size: 27 Copynumber: 29.7 Consensus size: 26
64821543 TTAGTTTACC
**
64821553 AAATTACTTAAATACCCCTAG-TTGTA
1 AAATTACCGAAATACCCCT-GTTTGTA
* *
64821579 AAATTACC-AAAGTACCCTCAGTTTATA
1 AAATTACCGAAA-TACCC-CTGTTTGTA
* * * *
64821606 AAATTACCAAAATA-TCATCGATTGTA
1 AAATTACCGAAATACCCCT-GTTTGTA
** *
64821632 AAATTACTAAAATACCCTTGATTTGTA
1 AAATTACCGAAATACCCCTG-TTTGTA
* *
64821659 AAATTACCGAAATACCCTCAGTTTGCA
1 AAATTACCGAAATACCC-CTGTTTGTA
* * * *
64821686 AAATTACTGAAATAGCCTTAATTTGTA
1 AAATTACCGAAATACCCCT-GTTTGTA
* *
64821713 AAATTACTGAAAT-CCCCTCGACTTGTA
1 AAATTACCGAAATACCCCT-G-TTTGTA
*
64821740 AAATTACC-AAAGTATCCCC-GATTTATA
1 AAATTACCGAAA-TA-CCCCTG-TTTGTA
* *
64821767 AAATTACCCAAATA-TCCTCGATTTGTA
1 AAATTACCGAAATACCCCT-G-TTTGTA
* * *
64821794 AAATTATCGAAATACCCTCAGTTTGCA
1 AAATTACCGAAATACCC-CTGTTTGTA
* * **
64821821 AAATTACTGAAATATCCCTGTAAGATA
1 AAATTACCGAAATACCCCTGTTTG-TA
* ** **
64821848 GAATTACC-ATTTTA-CCCTCGATTTACA
1 AAATTACCGA-AATACCCCT-G-TTTGTA
* * **
64821875 AAATTACTGAAATACCCTTAGTTTACA
1 AAATTACCGAAATACCCCT-GTTTGTA
* ***
64821902 AAATTACCAAAATA-CCCTCGATCAATA
1 AAATTACCGAAATACCCCT-G-TTTGTA
*
64821929 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCGAAATACCCCT-GTTTGTA
**
64821956 AAATTACCGAAATACCCCTGATTTGGG
1 AAATTACCGAAATACCCCTG-TTTGTA
* * * **
64821983 AAATTACTGAAATATCCTTGTAGGGTA
1 AAATTACCGAAATACCCCTGT-TTGTA
* * * **
64822010 GAATTACTGAAATACCCTTGTAGGGTA
1 AAATTACCGAAATACCCCTGT-TTGTA
* ** **
64822037 GAATTTTC-AGAATACCCCTGTAGGGTA
1 AAATTACCGA-AATACCCCTGT-TTGTA
* **
64822064 GAATTACCGAAATACCCCTGTAGGGTA
1 AAATTACCGAAATACCCCTGT-TTGTA
* * ***
64822091 GAATTACCGGAATACCCCTGCAGGATA
1 AAATTACCGAAATACCCCTGTTTG-TA
* ***
64822118 GAATTACCGAAATACCCCTGCAGGGTA
1 AAATTACCGAAATACCCCTG-TTTGTA
* * **
64822145 GAATTACCGAAATACCCTTGTAGAGTA
1 AAATTACCGAAATACCCCTGT-TTGTA
* ** * **
64822172 GAATTGTCGCAATACCCCTGTAGGGTA
1 AAATTACCGAAATACCCCTGT-TTGTA
* **
64822199 AAATTATCGAAATACCCCTGTAGGGTA
1 AAATTACCGAAATACCCCTGT-TTGTA
* * **
64822226 GAATTACCGGAATACCCCTGTAGGGTA
1 AAATTACCGAAATACCCCTGT-TTGTA
* **
64822253 GAATTACCGAAATACCCCTGTAGGGTA
1 AAATTACCGAAATACCCCTGT-TTGTA
* * **
64822280 GAATTACCGGAATACCCCTGTAGGGTA
1 AAATTACCGAAATACCCCTGT-TTGTA
* * **
64822307 GAATTATCGAAATACCCCTGTAGGGTA
1 AAATTACCGAAATACCCCTGT-TTGTA
*
64822334 GAATTACCGAAATACCCCT
1 AAATTACCGAAATACCCCT
64822353 ATAGGGTAGA
Statistics
Matches: 628, Mismatches: 113, Indels: 65
0.78 0.14 0.08
Matches are distributed among these distances:
25 5 0.01
26 57 0.09
27 538 0.86
28 23 0.04
29 5 0.01
ACGTcount: A:0.36, C:0.21, G:0.15, T:0.28
Consensus pattern (26 bp):
AAATTACCGAAATACCCCTGTTTGTA
Found at i:64821987 original size:81 final size:80
Alignment explanation
Indices: 64821553--64821989 Score: 320
Period size: 81 Copynumber: 5.4 Consensus size: 80
64821543 TTAGTTTACC
* * *
64821553 AAATTACTTAAATACCCCT-AGTTGTAAAATTACCAAAGTACCCTC-AGTTTATAAAATTACCAA
1 AAATTACTGAAATACCCCTGATTTGTAAAATTACCAAAATACCCTCGA-TTTATAAAATTACCAA
* *
64821616 AATATCATCGA-TTGTA
65 AATACCCT-GATTTGTA
* * * ** **
64821632 AAATTACTAAAATACCCTTGATTTGTAAAATTACCGAAATACCCTC-AGTTTGCAAAATTACTGA
1 AAATTACTGAAATACCCCTGATTTGTAAAATTACCAAAATACCCTCGA-TTTATAAAATTACCAA
* *
64821696 AATAGCCTTAATTTGTA
65 AATA-CCCTGATTTGTA
* * *
64821713 AAATTACTGAAAT-CCCCTCGACTTGTAAAATTACCAAAGTATCCC-CGATTTATAAAATTACCC
1 AAATTACTGAAATACCCCT-GATTTGTAAAATTACCAAAATA-CCCTCGATTTATAAAATTACCA
*
64821776 AAATATCCTCGATTTGTA
64 AAATACCCT-GATTTGTA
* * ** ** *
64821794 AAATTA-TCGAAATA-CCCTCAGTTTGCAAAATTACTGAAATATCCCT-G-TAAGATAGAATTAC
1 AAATTACT-GAAATACCCCTGA-TTTGTAAAATTACCAAAATA-CCCTCGAT-TTATAAAATTAC
*** **
64821855 CATTTTACCCTCGATTTACA
62 CAAAATACCCT-GATTTGTA
* ** **
64821875 AAATTACTGAAATA-CCCTTAGTTTACAAAATTACCAAAATACCCTCGATCAATAAAATTACCAA
1 AAATTACTGAAATACCCCTGA-TTTGTAAAATTACCAAAATACCCTCGATTTATAAAATTACCAA
*
64821939 AATACCCCTGGTTTGTA
65 AATA-CCCTGATTTGTA
* **
64821956 AAATTACCGAAATACCCCTGATTTGGGAAATTAC
1 AAATTACTGAAATACCCCTGATTTGTAAAATTAC
64821990 TGAAATATCC
Statistics
Matches: 283, Mismatches: 58, Indels: 32
0.76 0.16 0.09
Matches are distributed among these distances:
79 17 0.06
80 55 0.19
81 196 0.69
82 15 0.05
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (80 bp):
AAATTACTGAAATACCCCTGATTTGTAAAATTACCAAAATACCCTCGATTTATAAAATTACCAAA
ATACCCTGATTTGTA
Found at i:64822357 original size:27 final size:27
Alignment explanation
Indices: 64821930--64822421 Score: 600
Period size: 27 Copynumber: 18.3 Consensus size: 27
64821920 CGATCAATAA
* ** *
64821930 AATTACCAAAATACCCCTGGT-TTGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
*
64821957 AATTACCGAAATACCCCTGATTTGGG-A-
1 AATTACCGAAATACCCCTG--TAGGGTAG
* * *
64821984 AATTACTGAAATATCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
64822011 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
**
64822038 AATTTTC-AGAATACCCCTGTAGGGTAG
1 AATTACCGA-AATACCCCTGTAGGGTAG
64822065 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
64822092 AATTACCGGAATACCCCTGCAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
64822119 AATTACCGAAATACCCCTGCAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
64822146 AATTACCGAAATACCCTTGTAGAGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * *
64822173 AATTGTCGCAATACCCCTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
*
64822200 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
64822227 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
64822254 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
64822281 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
64822308 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
64822335 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
64822362 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
64822389 AATTA-CTAAGATA-CCTTGTAGGGTAA
1 AATTACCGAA-ATACCCCTGTAGGGTAG
64822415 AATTACC
1 AATTACC
64822422 ATTTTGCCCC
Statistics
Matches: 408, Mismatches: 48, Indels: 18
0.86 0.10 0.04
Matches are distributed among these distances:
25 4 0.01
26 20 0.05
27 380 0.93
28 3 0.01
29 1 0.00
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:64822867 original size:6 final size:6
Alignment explanation
Indices: 64822829--64822948 Score: 77
Period size: 6 Copynumber: 19.3 Consensus size: 6
64822819 TTGCATTCAC
* * *
64822829 ATTCTG ATTTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTTTG ATTCTG
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
64822879 -TTACCTG ATACTG ATTTTG ATTCTG ATTTTG -TCATCTA ATTCTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
64822929 ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG A-TTCTG AT
64822949 AATGTTTCTT
Statistics
Matches: 88, Mismatches: 14, Indels: 24
0.70 0.11 0.19
Matches are distributed among these distances:
5 6 0.07
6 65 0.74
7 14 0.16
8 3 0.03
ACGTcount: A:0.19, C:0.15, G:0.15, T:0.51
Consensus pattern (6 bp):
ATTCTG
Found at i:64822875 original size:31 final size:31
Alignment explanation
Indices: 64822829--64822964 Score: 141
Period size: 31 Copynumber: 4.4 Consensus size: 31
64822819 TTGCATTCAC
*
64822829 ATTCTGATTTTTGATTCTGTTACCTGATACTG
1 ATTCTGA-TTCTGATTCTGTTACCTGATACTG
*
64822861 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
* * * * * *
64822892 ATTTTGATTCTGATTTTGTCATCTAATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
*
64822923 ATTCTGATTCTGATTCTAGTT--CTGATAATG
1 ATTCTGATTCTGATTCT-GTTACCTGATACTG
* *
64822953 TTTCTTATTCTG
1 ATTCTGATTCTG
64822965 CAATGGGTTA
Statistics
Matches: 88, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
30 16 0.18
31 63 0.72
32 9 0.10
ACGTcount: A:0.19, C:0.15, G:0.15, T:0.51
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACCTGATACTG
Found at i:64824934 original size:27 final size:26
Alignment explanation
Indices: 64824911--64825390 Score: 272
Period size: 27 Copynumber: 17.8 Consensus size: 26
64824901 ATACCCCAAG
* *
64824911 TTGTAAAATTACCAAAGTACCCCCGGT
1 TTGTAAAATTACCAAA-TACCCTCGAT
* * *
64824938 TTATAAAATTACCGAAATACCGTC-AA
1 TTGTAAAATTACC-AAATACCCTCGAT
*
64824964 TTGTAAAATTACTAAAATACCCTCGAT
1 TTGTAAAATTAC-CAAATACCCTCGAT
*
64824991 TTGTAAAATTACTGAAATACCCTC-AGT
1 TTGTAAAATTAC-CAAATACCCTCGA-T
*
64825018 TTGTAAAATTACTGAAATA-CCTCGAT
1 TTGTAAAATTAC-CAAATACCCTCGAT
** *
64825044 TTGTAAAATTATTGAAATACCCTCGAC
1 TTGTAAAATTA-CCAAATACCCTCGAT
* *
64825071 TTGTTAAATTACCAAAGTACCCCCGAT
1 TTGTAAAATTACCAAA-TACCCTCGAT
* *
64825098 TTATAAAATTATCCAAATATCCTCGAT
1 TTGTAAAATTA-CCAAATACCCTCGAT
* *
64825125 TTGTAAAATTATCAAAATACCCT-TAGT
1 TTGTAAAATTA-CCAAATACCCTCGA-T
* *
64825152 TTGCAAAATTACTGAAATACCCTCGAT
1 TTGTAAAATTAC-CAAATACCCTCGAT
*
64825179 TTGTAAAATTACTGAAATACTCCT-G-T
1 TTGTAAAATTAC-CAAATAC-CCTCGAT
** * **
64825205 AAGATAGAATTACCATTTTACCCTCGAT
1 TTG-TAAAATTACCA-AATACCCTCGAT
** * ** *
64825233 TTACAAAATTACTATTTTACCCTCAAT
1 TTGTAAAATTACCA-AATACCCTCGAT
** * * *
64825260 TTACAAAATTACTGAAATACCCTTGGT
1 TTGTAAAATTAC-CAAATACCCTCGAT
* *
64825287 TTATAAAATTACCAAAATACCCTCAAT
1 TTGTAAAATTACC-AAATACCCTCGAT
*** * * *
64825314 CAATATAATTACTAAAATACCC-CTGGT
1 TTGTAAAATTAC-CAAATACCCTC-GAT
*
64825341 TTGTAAAATTACCGAAATACCCTTGAT
1 TTGTAAAATTACC-AAATACCCTCGAT
* * *
64825368 TTGTGAAATAACTGAAATACCCT
1 TTGTAAAATTAC-CAAATACCCT
64825391 TGTAGGGTAG
Statistics
Matches: 360, Mismatches: 69, Indels: 48
0.75 0.14 0.10
Matches are distributed among these distances:
26 55 0.15
27 291 0.81
28 14 0.04
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.33
Consensus pattern (26 bp):
TTGTAAAATTACCAAATACCCTCGAT
Found at i:64824968 original size:53 final size:54
Alignment explanation
Indices: 64824890--64825390 Score: 383
Period size: 54 Copynumber: 9.3 Consensus size: 54
64824880 TTAGTTTACC
* * * * * *
64824890 AAATTACTGAAATACCC-CAAGTTGTAAAATTACCAAAGTACCCCCGGTTTATA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTACCAAAATACCCTCGATTTGTA
* * * *
64824943 AAATTACCGAAATACCGTC-AATTGTAAAATTACTAAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTACCAAAATACCCTCGATTTGTA
**
64824996 AAATTACTGAAATACCCTC-AGTTTGTAAAATTACTGAAATA-CCTCGATTTGTA
1 AAATTACTGAAATACCCTCGA-TTTGTAAAATTACCAAAATACCCTCGATTTGTA
* * * * * *
64825049 AAATTATTGAAATACCCTCGACTTGTTAAATTACCAAAGTACCCCCGATTTATA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTACCAAAATACCCTCGATTTGTA
* * * * *
64825103 AAATTA-TCCAAATATCCTCGATTTGTAAAATTATCAAAATACCCT-TAGTTTGCA
1 AAATTACT-GAAATACCCTCGATTTGTAAAATTACCAAAATACCCTCGA-TTTGTA
** **
64825157 AAATTACTGAAATACCCTCGATTTGTAAAATTACTGAAATACTCCT-G-TAAGATA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTACCAAAATAC-CCTCGATTTG-TA
* * ** ** * *** * **
64825211 GAATTAC-CATTTTACCCTCGATTTACAAAATTACTATTTTACCCTCAATTTACA
1 AAATTACTGA-AATACCCTCGATTTGTAAAATTACCAAAATACCCTCGATTTGTA
* * * * ***
64825265 AAATTACTGAAATACCCTTGGTTTATAAAATTACCAAAATACCCTCAATCAATA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTACCAAAATACCCTCGATTTGTA
* * * * * *
64825319 TAATTACTAAAATACCC-CTGGTTTGTAAAATTACCGAAATACCCTTGATTTGTG
1 AAATTACTGAAATACCCTC-GATTTGTAAAATTACCAAAATACCCTCGATTTGTA
*
64825373 AAATAACTGAAATACCCT
1 AAATTACTGAAATACCCT
64825391 TGTAGGGTAG
Statistics
Matches: 351, Mismatches: 82, Indels: 28
0.76 0.18 0.06
Matches are distributed among these distances:
53 114 0.32
54 231 0.66
55 6 0.02
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (54 bp):
AAATTACTGAAATACCCTCGATTTGTAAAATTACCAAAATACCCTCGATTTGTA
Found at i:64825308 original size:81 final size:81
Alignment explanation
Indices: 64824937--64825310 Score: 305
Period size: 81 Copynumber: 4.6 Consensus size: 81
64824927 GTACCCCCGG
* * * * * *
64824937 TTTATAAAATTACCGAAATACCGTC-AATTGTAAAATTACTAAAATACCCTCGATTTGTAAAATT
1 TTTATAAAATTACTGAAATACCCTCGATTTATAAAATTACCAAAATACCCTCGATTTGCAAAATT
*
64825001 ACTGAAATACCCTCAG
66 ACTGAAATACCCTCAA
* * *** * **
64825017 TTTGTAAAATTACTGAAATA-CCTCGATTTGTAAAATTATTGAAATACCCTCGACTTGTTAAATT
1 TTTATAAAATTACTGAAATACCCTCGATTTATAAAATTACCAAAATACCCTCGATTTGCAAAATT
* * *
64825081 AC-CAAAGTACCCCCGA
66 ACTGAAA-TACCCTCAA
* * * * *
64825097 TTTATAAAATTA-TCCAAATATCCTCGATTTGTAAAATTATCAAAATACCCT-TAGTTTGCAAAA
1 TTTATAAAATTACT-GAAATACCCTCGATTTATAAAATTACCAAAATACCCTCGA-TTTGCAAAA
*
64825160 TTACTGAAATACCCTCGA
64 TTACTGAAATACCCTCAA
* ** * *** *
64825178 TTTGTAAAATTACTGAAATACTCCT-G-TAAGATAGAATTACCATTTTACCCTCGATTTACAAAA
1 TTTATAAAATTACTGAAATAC-CCTCGAT-TTATAAAATTACCAAAATACCCTCGATTTGCAAAA
**
64825241 TTACT-ATTTTACCCTCAA
64 TTACTGA-AATACCCTCAA
* * *
64825259 TTTACAAAATTACTGAAATACCCTTGGTTTATAAAATTACCAAAATACCCTC
1 TTTATAAAATTACTGAAATACCCTCGATTTATAAAATTACCAAAATACCCTC
64825311 AATCAATATA
Statistics
Matches: 235, Mismatches: 46, Indels: 25
0.77 0.15 0.08
Matches are distributed among these distances:
79 7 0.03
80 82 0.35
81 137 0.58
82 9 0.04
ACGTcount: A:0.39, C:0.20, G:0.08, T:0.34
Consensus pattern (81 bp):
TTTATAAAATTACTGAAATACCCTCGATTTATAAAATTACCAAAATACCCTCGATTTGCAAAATT
ACTGAAATACCCTCAA
Found at i:64825408 original size:27 final size:27
Alignment explanation
Indices: 64825381--64825525 Score: 211
Period size: 27 Copynumber: 5.4 Consensus size: 27
64825371 TGAAATAACT
* *
64825381 GAAATACCCTTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
*
64825408 GAAATACCCCTATAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
64825435 GGAATACCCCTGTAGGGTAGAATTGCC
1 GAAATACCCCTGTAGGGTAGAATTACC
64825462 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
64825489 -AGAATACCCCTATAGGGTAGAATTACC
1 GA-AATACCCCTGTAGGGTAGAATTACC
*
64825516 GGAATACCCC
1 GAAATACCCC
64825526 AATTACCGGA
Statistics
Matches: 106, Mismatches: 10, Indels: 4
0.88 0.08 0.03
Matches are distributed among these distances:
26 1 0.01
27 105 0.99
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.23
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACC
Found at i:64825432 original size:81 final size:79
Alignment explanation
Indices: 64825347--64825827 Score: 469
Period size: 81 Copynumber: 6.1 Consensus size: 79
64825337 TGGTTTGTAA
* * * * *
64825347 AATTACCGAAATACCCTTGATTTGTGAAATAACTGAAATACCCTTGTAGGGTAGAATTACTGAAA
1 AATTACCGAAATACCCTTG--TAGGGAAATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAA
*
64825412 TACCCCTATAGGGTAG
64 TACCCCTGTAGGGTAG
* * * *
64825428 AATTACCGGAATACCCCTGTAGGGTAGAATTGCCGAAATACCCCTGTAGGGTAGAATTACC-AGA
1 AATTACCGAAATACCCTTGTAGGG-A-AATTACCGAAATACCCTTGTAGGGTAGAATTACCGA-A
*
64825492 ATACCCCTATAGGGTAG
63 ATACCCCTGTAGGGTAG
* * * * *
64825509 AATTACCGGAATACCC--------CAATTACCGGAATACCCTTGTAGGGTAGAATTACTGGAATA
1 AATTACCGAAATACCCTTGTAGGGAAATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAATA
64825566 CCCCTGTAGGGTAG
66 CCCCTGTAGGGTAG
* * * *
64825580 AATTACCGAAATATCCTTATAGGGTAGAATTATCGAAATACCCTTATAGGGTAGAATTACCGAAA
1 AATTACCGAAATACCCTTGTAGGG-A-AATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAA
*
64825645 TACCACTGTAGGGTAG
64 TACCCCTGTAGGGTAG
* * * *
64825661 AATTACTGAAATACCCTTGTAGGGTAGAATTACCGGAATACCCCTGTAGGGTAGAATTACCGGAA
1 AATTACCGAAATACCCTTGTAGGG-A-AATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAA
*
64825726 TACCTCTGTAGGGTAG
64 TACCCCTGTAGGGTAG
* * * ** * * *
64825742 AATTATCGAAATACCCCTGTAGGGTAGATTACTAAAATACCCCTGTAGGGTGGAATTACCGAGAT
1 AATTACCGAAATACCCTTGTAGGG-AAATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAAT
* * *
64825807 A-CCTTGTGGGGTAA
65 ACCCCTGTAGGGTAG
64825821 AATTACC
1 AATTACC
64825828 ATTTTACCCC
Statistics
Matches: 337, Mismatches: 49, Indels: 30
0.81 0.12 0.07
Matches are distributed among these distances:
71 61 0.18
79 18 0.05
80 35 0.10
81 223 0.66
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.26
Consensus pattern (79 bp):
AATTACCGAAATACCCTTGTAGGGAAATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAATA
CCCCTGTAGGGTAG
Found at i:64825441 original size:54 final size:54
Alignment explanation
Indices: 64825383--64825802 Score: 513
Period size: 54 Copynumber: 8.0 Consensus size: 54
64825373 AAATAACTGA
* *
64825383 AATACCCTTGTAGGGTAGAATTACTGAAATACCCCTATAGGGTAGAATTACCGG
1 AATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGG
* * *
64825437 AATACCCCTGTAGGGTAGAATTGCCGAAATACCCCTGTAGGGTAGAATTACCAG
1 AATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGG
* * *
64825491 AATACCCCTATAGGGTAGAATTACCGGAATACCCC----------AATTACCGG
1 AATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGG
* * *
64825535 AATACCCTTGTAGGGTAGAATTACTGGAATACCCCTGTAGGGTAGAATTACCGA
1 AATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGG
* * * * * *
64825589 AATATCCTTATAGGGTAGAATTA-TCGAAATACCCTTATAGGGTAGAATTACCGA
1 AATACCCCTGTAGGGTAGAATTACT-GAAATACCCCTGTAGGGTAGAATTACCGG
* *
64825643 AATACCACTGTAGGGTAGAATTACTGAAATACCCTTGTAGGGTAGAATTACCGG
1 AATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGG
* * * * *
64825697 AATACCCCTGTAGGGTAGAATTACCGGAATACCTCTGTAGGGTAGAATTATCGA
1 AATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGG
* *
64825751 AATACCCCTGTAGGGTAG-ATTACTAAAATACCCCTGTAGGGTGGAATTACCG
1 AATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCG
64825803 AGATACCTTG
Statistics
Matches: 317, Mismatches: 37, Indels: 25
0.84 0.10 0.07
Matches are distributed among these distances:
44 40 0.13
53 29 0.09
54 247 0.78
55 1 0.00
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (54 bp):
AATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGG
Found at i:64825531 original size:17 final size:17
Alignment explanation
Indices: 64825509--64825541 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
64825499 TATAGGGTAG
64825509 AATTACCGGAATACCCC
1 AATTACCGGAATACCCC
64825526 AATTACCGGAATACCC
1 AATTACCGGAATACCC
64825542 TTGTAGGGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.36, C:0.33, G:0.12, T:0.18
Consensus pattern (17 bp):
AATTACCGGAATACCCC
Found at i:64825549 original size:44 final size:44
Alignment explanation
Indices: 64825482--64825569 Score: 140
Period size: 44 Copynumber: 2.0 Consensus size: 44
64825472 TGTAGGGTAG
64825482 AATTACCAGAATACCCCTATAGGGTAGAATTACCGGAATACCCC
1 AATTACCAGAATACCCCTATAGGGTAGAATTACCGGAATACCCC
* * * *
64825526 AATTACCGGAATACCCTTGTAGGGTAGAATTACTGGAATACCCC
1 AATTACCAGAATACCCCTATAGGGTAGAATTACCGGAATACCCC
64825570 TGTAGGGTAG
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (44 bp):
AATTACCAGAATACCCCTATAGGGTAGAATTACCGGAATACCCC
Found at i:64825556 original size:27 final size:27
Alignment explanation
Indices: 64825526--64825827 Score: 369
Period size: 27 Copynumber: 11.3 Consensus size: 27
64825516 GGAATACCCC
*
64825526 AATTACCGGAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
64825553 AATTACTGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
64825580 AATTACCGAAATATCCTTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
64825607 AATTATCGAAATACCCTTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
64825634 AATTACCGAAATACCAC-TGTAGGGTAG
1 AATTACCGAAATACC-CTTGTAGGGTAG
*
64825661 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
64825688 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
64825715 AATTACCGGAATA-CCTCTGTAGGGTAG
1 AATTACCGAAATACCCT-TGTAGGGTAG
* *
64825742 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
** * *
64825769 -ATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
64825795 AATTACCGAGATA-CCTTGTGGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAG
64825821 AATTACC
1 AATTACC
64825828 ATTTTACCCC
Statistics
Matches: 240, Mismatches: 30, Indels: 11
0.85 0.11 0.04
Matches are distributed among these distances:
26 41 0.17
27 196 0.82
28 3 0.01
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:64826263 original size:6 final size:6
Alignment explanation
Indices: 64826225--64826344 Score: 77
Period size: 6 Copynumber: 19.3 Consensus size: 6
64826215 TTGCATTCAC
* * *
64826225 ATTCTG ATTTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTTTG ATTCTG
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
64826275 -TTACTTG ATACTG ATTTTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG
1 ATT-C-TG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
64826325 ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG A-TTCTG AT
64826345 AATGTTTCTT
Statistics
Matches: 88, Mismatches: 14, Indels: 24
0.70 0.11 0.19
Matches are distributed among these distances:
5 6 0.07
6 65 0.74
7 14 0.16
8 3 0.03
ACGTcount: A:0.19, C:0.16, G:0.15, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:64826271 original size:31 final size:31
Alignment explanation
Indices: 64826225--64826360 Score: 150
Period size: 31 Copynumber: 4.4 Consensus size: 31
64826215 TTGCATTCAC
64826225 ATTCTGATTTTTGATTCTGTTACCTGATACTG
1 ATTCTGA-TTTTGATTCTGTTACCTGATACTG
*
64826257 ATTCTGATTTTGATTCTGTTACTTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
* * * * *
64826288 ATTTTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
* *
64826319 ATTCTGATTCTGATTCTAGTT--CTGATAATG
1 ATTCTGATTTTGATTCT-GTTACCTGATACTG
* *
64826349 TTTCTTATTTTG
1 ATTCTGATTTTG
64826361 TAATTGGTTA
Statistics
Matches: 88, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
30 15 0.17
31 64 0.73
32 9 0.10
ACGTcount: A:0.19, C:0.15, G:0.15, T:0.51
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:64826289 original size:19 final size:19
Alignment explanation
Indices: 64826236--64826290 Score: 52
Period size: 19 Copynumber: 3.3 Consensus size: 19
64826226 TTCTGATTTT
*
64826236 TGATTCTGTTACCTGATAC
1 TGATTCTGTTACTTGATAC
64826255 TGATTCTG--A-TT--T--
1 TGATTCTGTTACTTGATAC
64826267 TGATTCTGTTACTTGATAC
1 TGATTCTGTTACTTGATAC
64826286 TGATT
1 TGATT
64826291 TTGATTCTGA
Statistics
Matches: 28, Mismatches: 1, Indels: 14
0.65 0.02 0.33
Matches are distributed among these distances:
12 8 0.29
14 2 0.07
15 2 0.07
16 1 0.04
17 2 0.07
19 13 0.46
ACGTcount: A:0.20, C:0.15, G:0.16, T:0.49
Consensus pattern (19 bp):
TGATTCTGTTACTTGATAC
Found at i:64839646 original size:8 final size:8
Alignment explanation
Indices: 64839633--64839660 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
64839623 GGTTTATCAT
64839633 ATGATTTC
1 ATGATTTC
64839641 ATGATTTC
1 ATGATTTC
64839649 ATGATTTC
1 ATGATTTC
64839657 ATGA
1 ATGA
64839661 AAATTTCGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.29, C:0.11, G:0.14, T:0.46
Consensus pattern (8 bp):
ATGATTTC
Found at i:64840963 original size:66 final size:67
Alignment explanation
Indices: 64840834--64840963 Score: 174
Period size: 66 Copynumber: 1.9 Consensus size: 67
64840824 GGGATGTATC
*
64840834 CCATGTAGACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCGCATGAGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTAC--G-GAGATAAATG-AGCTAGGTCGCATGAGTGATACCAAGTGA
64840899 AGGACA
62 AGGACA
* *
64840905 CCATGTAGACAAGAGAGCTAC-GAGATAAATCG-GCTAGGTCGCATGAGTGGTACTAAGTG
1 CCATGTAGACAAGAGAGCTACGGAGATAAAT-GAGCTAGGTCGCATGAGTGATACCAAGTG
64840964 TTCACCATGT
Statistics
Matches: 55, Mismatches: 3, Indels: 7
0.85 0.05 0.11
Matches are distributed among these distances:
66 24 0.44
67 9 0.16
68 1 0.02
71 21 0.38
ACGTcount: A:0.34, C:0.16, G:0.30, T:0.20
Consensus pattern (67 bp):
CCATGTAGACAAGAGAGCTACGGAGATAAATGAGCTAGGTCGCATGAGTGATACCAAGTGAAGGA
CA
Found at i:64846848 original size:22 final size:22
Alignment explanation
Indices: 64846817--64846860 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
64846807 AATTATTAAC
*
64846817 ATAATGAATTTTAAATAATTTT
1 ATAATAAATTTTAAATAATTTT
* *
64846839 ATAATAAATTTTGATTAATTTT
1 ATAATAAATTTTAAATAATTTT
64846861 GATCATTTTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52
Consensus pattern (22 bp):
ATAATAAATTTTAAATAATTTT
Found at i:64849624 original size:22 final size:22
Alignment explanation
Indices: 64849599--64849664 Score: 54
Period size: 19 Copynumber: 3.1 Consensus size: 22
64849589 CGAGCTATCA
64849599 ACGGGTCTGCTCACACAAGCTG
1 ACGGGTCTGCTCACACAAGCTG
64849621 AC-GGTCATG---ACA-AAGCT-
1 ACGGGTC-TGCTCACACAAGCTG
*
64849638 ACACGGTGCTGCTCACACAAGCTG
1 AC-GGGT-CTGCTCACACAAGCTG
64849662 ACG
1 ACG
64849665 AGTATCTGCA
Statistics
Matches: 34, Mismatches: 1, Indels: 17
0.65 0.02 0.33
Matches are distributed among these distances:
17 2 0.06
18 5 0.15
19 8 0.24
20 1 0.03
21 4 0.12
22 7 0.21
23 5 0.15
24 2 0.06
ACGTcount: A:0.27, C:0.30, G:0.26, T:0.17
Consensus pattern (22 bp):
ACGGGTCTGCTCACACAAGCTG
Found at i:64862849 original size:27 final size:27
Alignment explanation
Indices: 64862819--64863195 Score: 210
Period size: 27 Copynumber: 14.0 Consensus size: 27
64862809 CCTTAAATTG
*
64862819 TAAAATTACCAAAGTACCCTCGATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* ****
64862846 TAAAATTATCGTTTTACCCTCGATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* * ****
64862873 TAGAATTATCGTTTTACCCTCGATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* ***** *
64862900 TAGAATTACTGTTTTACCCTTGATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* * ******
64862927 CAGAATTATTGTTTTACCCTCGATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* * * *
64862954 CAAAATTACTAAAATACCCTTGGTTTA
1 TAAAATTACCAAAATACCCTCGATTTA
*
64862981 CAAAATTACCAAAATACCCTCGA-TTA
1 TAAAATTACCAAAATACCCTCGATTTA
* * *
64863007 GTAAAATTACCAAAATACCCTAG-TCTG
1 -TAAAATTACCAAAATACCCTCGATTTA
* * * *
64863034 TAAAATTGCTAAAATACCC-CTGGTTTG
1 TAAAATTACCAAAATACCCTC-GATTTA
* *
64863061 TAAAATTA-CAGAAATACCCTCAATTTG
1 TAAAATTACCA-AAATACCCTCGATTTA
* *
64863088 TAAAATTACCAAAATACCCT-TAGTTTG
1 TAAAATTACCAAAATACCCTCGA-TTTA
* *
64863115 TAAAATTACCAAAATACCACTAG-TTTG
1 TAAAATTACCAAAATACC-CTCGATTTA
* * * *
64863142 TGAAATTACCGAAATACCCTCAATTTG
1 TAAAATTACCAAAATACCCTCGATTTA
64863169 TAAAATTACCAAAATACCC-CTGATTTA
1 TAAAATTACCAAAATACCCTC-GATTTA
64863196 CAAAGTTATA
Statistics
Matches: 293, Mismatches: 45, Indels: 24
0.81 0.12 0.07
Matches are distributed among these distances:
26 26 0.09
27 262 0.89
28 5 0.02
ACGTcount: A:0.37, C:0.20, G:0.09, T:0.34
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCTCGATTTA
Found at i:64863022 original size:54 final size:55
Alignment explanation
Indices: 64862941--64863271 Score: 225
Period size: 54 Copynumber: 6.1 Consensus size: 55
64862931 ATTATTGTTT
** * *
64862941 TACCCTCGA-TTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGACTTTGTAAAATTACCAAAATACCCTTAGTTTACAAAATTACCAAAA
* * ** * *
64862995 TACCCTCGA-TTAGTAAAATTACCAAAATACCC-TAGTCTGTAAAATTGCTAAAA
1 TACCCTCGACTTTGTAAAATTACCAAAATACCCTTAGTTTACAAAATTACCAAAA
* * * **
64863048 TACCC-CTG-GTTTGTAAAATTA-CAGAAATACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTC-GACTTTGTAAAATTACCA-AAATACCCTTAGTTTACAAAATTACCAAAA
* * *** *
64863102 TACCCT-TAGTTTGTAAAATTACCAAAATACCAC-TAGTTTGTGAAATTACCGAAA
1 TACCCTCGACTTTGTAAAATTACCAAAATACC-CTTAGTTTACAAAATTACCAAAA
* * * *
64863156 TACCCTC-AATTTGTAAAATTACCAAAATACCCCT-GATTTACAAAGTTA-TAGAAA
1 TACCCTCGACTTTGTAAAATTACCAAAATACCCTTAG-TTTACAAAATTACCA-AAA
* * *** * * **
64863210 TACCCTTGACTTTCTAAAAATTATGGAAATACCATTGGTTTACAAAATTACTGAAA
1 TACCCTCGACTTTGT-AAAATTACCAAAATACCCTTAGTTTACAAAATTACCAAAA
64863266 TACCCT
1 TACCCT
64863272 TGGTTTGTAG
Statistics
Matches: 223, Mismatches: 38, Indels: 30
0.77 0.13 0.10
Matches are distributed among these distances:
52 3 0.01
53 42 0.19
54 133 0.60
55 8 0.04
56 35 0.16
57 2 0.01
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (55 bp):
TACCCTCGACTTTGTAAAATTACCAAAATACCCTTAGTTTACAAAATTACCAAAA
Found at i:64863026 original size:81 final size:81
Alignment explanation
Indices: 64862941--64863217 Score: 305
Period size: 81 Copynumber: 3.4 Consensus size: 81
64862931 ATTATTGTTT
** *
64862941 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGATT
1 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTCAATT
*
64863006 AGTAAAATTACCAAAA
66 TGTAAAATTACCAAAA
* * ** * *
64863022 TACCCTAG-TCTGTAAAATTGCTAAAATACCCCTGGTTTGTAAAATTA-CAGAAATACCCTCAAT
1 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCA-AAATACCCTCAAT
64863085 TTGTAAAATTACCAAAA
65 TTGTAAAATTACCAAAA
* ** * * * *
64863102 TACCCT-TAGTTTGTAAAATTACCAAAATACCAC-TAGTTTGTGAAATTACCGAAATACCCTCAA
1 TACCCTCGA-TTTACAAAATTACTAAAATACC-CTTGGTTTGTAAAATTACCAAAATACCCTCAA
64863165 TTTGTAAAATTACCAAAA
64 TTTGTAAAATTACCAAAA
*
64863183 TACCC-CTGATTTACAAAGTTA-TAGAAATACCCTTG
1 TACCCTC-GATTTACAAAATTACTA-AAATACCCTTG
64863218 ACTTTCTAAA
Statistics
Matches: 164, Mismatches: 23, Indels: 18
0.80 0.11 0.09
Matches are distributed among these distances:
79 2 0.01
80 68 0.41
81 91 0.55
82 3 0.02
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (81 bp):
TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTCAATT
TGTAAAATTACCAAAA
Found at i:64863265 original size:27 final size:27
Alignment explanation
Indices: 64863226--64863277 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
64863216 TGACTTTCTA
64863226 AAAATTATGGAAATACCATTGGTTTAC
1 AAAATTATGGAAATACCATTGGTTTAC
*
64863253 AAAATTACT-GAAATACCCTTGGTTT
1 AAAATTA-TGGAAATACCATTGGTTT
64863278 GTAGATTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.35
Consensus pattern (27 bp):
AAAATTATGGAAATACCATTGGTTTAC
Found at i:64863371 original size:26 final size:27
Alignment explanation
Indices: 64863322--64863416 Score: 122
Period size: 27 Copynumber: 3.6 Consensus size: 27
64863312 GACTAAAATA
*
64863322 CCCCTATTA-GGTAAAAAGACCGTAAAG
1 CCCCTA-TAGGGTAAAGAGACCGTAAAG
64863349 CCCCTATAGGGTAAAGAGA-CGTAAAG
1 CCCCTATAGGGTAAAGAGACCGTAAAG
* *
64863375 CCCCTATAGGGTAAAGTGACCGTAATG
1 CCCCTATAGGGTAAAGAGACCGTAAAG
* *
64863402 CCCCTGTATGGTAAA
1 CCCCTATAGGGTAAA
64863417 ATGACGAATA
Statistics
Matches: 61, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
26 27 0.44
27 34 0.56
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.20
Consensus pattern (27 bp):
CCCCTATAGGGTAAAGAGACCGTAAAG
Found at i:64864280 original size:24 final size:27
Alignment explanation
Indices: 64864222--64864280 Score: 83
Period size: 24 Copynumber: 2.4 Consensus size: 27
64864212 GAGGAAGTGC
64864222 AAAAGA-GCTTATGCCCCAGTTTATTG
1 AAAAGAGGCTTATGCCCCAGTTTATTG
64864248 AAAAG-GGCTT-TGCCCCAG-TTATT-
1 AAAAGAGGCTTATGCCCCAGTTTATTG
64864271 AAAAGAGGCT
1 AAAAGAGGCT
64864281 AGCCCTCCAG
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
23 5 0.16
24 9 0.29
25 8 0.26
26 9 0.29
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (27 bp):
AAAAGAGGCTTATGCCCCAGTTTATTG
Found at i:64864496 original size:42 final size:42
Alignment explanation
Indices: 64864413--64864504 Score: 121
Period size: 42 Copynumber: 2.2 Consensus size: 42
64864403 TAGTCTCCCC
* ** **
64864413 AAATGGGCTTGCATACATTCATTGGTATTTTATATGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
* *
64864455 AAATGGGCTTGCATACATCCATTGACATTACATGTGTTATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
64864497 AAATGGGC
1 AAATGGGC
64864505 CTATGGGCCA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.29, C:0.13, G:0.21, T:0.37
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
Found at i:64864563 original size:31 final size:31
Alignment explanation
Indices: 64864528--64864606 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
64864518 CGTTTACAAT
64864528 AAAGGCTTCGGCCCAGTGAAATAATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATAATTTATGA
* *
64864559 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATAATTTATGA
64864590 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
64864607 ATATGTTGAG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGAAATAATTTATGA
Found at i:64864659 original size:29 final size:28
Alignment explanation
Indices: 64864625--64864679 Score: 83
Period size: 29 Copynumber: 1.9 Consensus size: 28
64864615 AGACTGAATT
* *
64864625 AGGGCTTAGGCCCATATTGCTACTGTTTA
1 AGGGCTAAGGCCCAAATTG-TACTGTTTA
64864654 AGGGCTAAGGCCCAAATTGTACTGTT
1 AGGGCTAAGGCCCAAATTGTACTGTT
64864680 ACTGAATAGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 7 0.29
29 17 0.71
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.31
Consensus pattern (28 bp):
AGGGCTAAGGCCCAAATTGTACTGTTTA
Found at i:64864699 original size:33 final size:33
Alignment explanation
Indices: 64864617--64864707 Score: 102
Period size: 33 Copynumber: 2.8 Consensus size: 33
64864607 ATATGTTGAG
*
64864617 ACTGAATTAGGGCTTAGGCCCATATTGCTACTGTT
1 ACTGAA-TAGGGCTTAGGCCCAAATTG-TACTGTT
*
64864652 --T--A-AGGGCTAAGGCCCAAATTGTACTGTT
1 ACTGAATAGGGCTTAGGCCCAAATTGTACTGTT
*
64864680 ACTGAATAGGGCTTTGGCCCAAATTGTA
1 ACTGAATAGGGCTTAGGCCCAAATTGTA
64864708 TTGACACTGT
Statistics
Matches: 47, Mismatches: 4, Indels: 12
0.75 0.06 0.19
Matches are distributed among these distances:
28 7 0.15
29 17 0.36
30 1 0.02
31 1 0.02
32 1 0.02
33 20 0.43
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (33 bp):
ACTGAATAGGGCTTAGGCCCAAATTGTACTGTT
Found at i:64880486 original size:13 final size:13
Alignment explanation
Indices: 64880470--64880496 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
64880460 TAAAAATTTA
64880470 AGTTAAAATAAGT
1 AGTTAAAATAAGT
64880483 AGTTAAAATAAGT
1 AGTTAAAATAAGT
64880496 A
1 A
64880497 AAATAAAACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.00, G:0.15, T:0.30
Consensus pattern (13 bp):
AGTTAAAATAAGT
Found at i:64887344 original size:27 final size:26
Alignment explanation
Indices: 64887296--64887355 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
64887286 GCGAAGCTGC
*
64887296 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
64887323 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
64887349 CAGATAT
1 CAGATAT
64887356 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:64893595 original size:19 final size:20
Alignment explanation
Indices: 64893571--64893611 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
64893561 TTTATTACAG
64893571 ATGTCTT-TGAATAACAGTA
1 ATGTCTTATGAATAACAGTA
64893590 ATGTCTTATGAATAACAGTA
1 ATGTCTTATGAATAACAGTA
64893610 AT
1 AT
64893612 TCAGAGTTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 7 0.33
20 14 0.67
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.37
Consensus pattern (20 bp):
ATGTCTTATGAATAACAGTA
Done.