Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 196 of 295
Found at i:66871200 original size:43 final size:44
Alignment explanation
Indices: 66871137--66871227 Score: 130
Period size: 43 Copynumber: 2.1 Consensus size: 44
66871127 ACTCAATCAC
* * * *
66871137 ATGCATCGCATCCATTATGAACTCGAACCACTCAATGAGCTCGG
1 ATGCATCGCATCCATAATGAACTCAAACCAATCAACGAGCTCGG
*
66871181 ATGC-TCGCGTCCATAATGAACTCAAACCAATCAACGAGCTCGG
1 ATGCATCGCATCCATAATGAACTCAAACCAATCAACGAGCTCGG
66871224 ATGC
1 ATGC
66871228 CACATATATC
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
43 38 0.90
44 4 0.10
ACGTcount: A:0.31, C:0.30, G:0.19, T:0.21
Consensus pattern (44 bp):
ATGCATCGCATCCATAATGAACTCAAACCAATCAACGAGCTCGG
Found at i:66877683 original size:18 final size:19
Alignment explanation
Indices: 66877649--66877687 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
66877639 AAATCAGATT
*
66877649 TTGTTTCAATTTTTTTATC
1 TTGTTTCAATTTGTTTATC
66877668 TTGTTTC-ATTTGTTTATC
1 TTGTTTCAATTTGTTTATC
66877686 TT
1 TT
66877688 TAGGAAACTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.13, C:0.10, G:0.08, T:0.69
Consensus pattern (19 bp):
TTGTTTCAATTTGTTTATC
Found at i:66878222 original size:22 final size:21
Alignment explanation
Indices: 66878197--66878251 Score: 65
Period size: 22 Copynumber: 2.4 Consensus size: 21
66878187 AGATCAACAC
66878197 AAATATAATCACATACATATCA
1 AAATATAATCACAT-CATATCA
*
66878219 AAATATCAATCTCATCATATCA
1 AAATAT-AATCACATCATATCA
66878241 ATAATCATAAT
1 A-AAT-ATAAT
66878252 AAACACAAGT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
22 14 0.48
23 13 0.45
24 2 0.07
ACGTcount: A:0.51, C:0.18, G:0.00, T:0.31
Consensus pattern (21 bp):
AAATATAATCACATCATATCA
Found at i:66879230 original size:5 final size:5
Alignment explanation
Indices: 66879220--66879251 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
66879210 CAGGGTGTGA
66879220 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
66879252 GAACACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:66879245 original size:9 final size:9
Alignment explanation
Indices: 66879221--66879251 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
66879211 AGGGTGTGAA
66879221 AAATAAAAT
1 AAATAAAAT
66879230 AAAATAAAAT
1 -AAATAAAAT
66879240 AAATAAAAT
1 AAATAAAAT
66879249 AAA
1 AAA
66879252 GAACACACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:66883683 original size:5 final size:5
Alignment explanation
Indices: 66883673--66883704 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
66883663 CAATTTGTGA
66883673 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
66883705 GAACACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:66883698 original size:9 final size:9
Alignment explanation
Indices: 66883674--66883704 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
66883664 AATTTGTGAA
66883674 AAATAAAAT
1 AAATAAAAT
66883683 AAAATAAAAT
1 -AAATAAAAT
66883693 AAATAAAAT
1 AAATAAAAT
66883702 AAA
1 AAA
66883705 GAACACACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:66885455 original size:16 final size:16
Alignment explanation
Indices: 66885436--66885466 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
66885426 CTTCTTCACT
66885436 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
66885452 TACTTACTTACTTAA
1 TACTCACTTACTTAA
66885467 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:66885472 original size:20 final size:20
Alignment explanation
Indices: 66885433--66885472 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
66885423 AAACTTCTTC
* *
66885433 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
66885453 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
66885473 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:66885842 original size:15 final size:15
Alignment explanation
Indices: 66885822--66885854 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
66885812 AAACTTATCA
66885822 ATGCCATGTCTTAAC
1 ATGCCATGTCTTAAC
*
66885837 ATGCCATGTCTTGAC
1 ATGCCATGTCTTAAC
66885852 ATG
1 ATG
66885855 GTCTTACATG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.33
Consensus pattern (15 bp):
ATGCCATGTCTTAAC
Found at i:66889412 original size:27 final size:27
Alignment explanation
Indices: 66889372--66889483 Score: 120
Period size: 27 Copynumber: 4.1 Consensus size: 27
66889362 AGGAAGCGTC
*
66889372 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
* *
66889399 CTGGTGGCTCTGCCACATATT-TTTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
**
66889426 CTGGTGGCTCTGCCATGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * *
66889454 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
66889480 CTGG
1 CTGG
66889484 CAGCCATGCT
Statistics
Matches: 71, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
26 8 0.11
27 46 0.65
28 17 0.24
ACGTcount: A:0.15, C:0.22, G:0.23, T:0.39
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:66889480 original size:54 final size:54
Alignment explanation
Indices: 66889372--66889483 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 54
66889362 AGGAAGCGTC
* * *
66889372 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTTTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* ** *
66889426 CTGGTGGCTCTGCCATGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
66889480 CTGG
1 CTGG
66889484 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 32 0.64
55 18 0.36
ACGTcount: A:0.15, C:0.22, G:0.23, T:0.39
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:66895983 original size:21 final size:22
Alignment explanation
Indices: 66895939--66895983 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
66895929 ATAACTCTTC
* *
66895939 CTCTCCTTTTATTTTTCATTTT
1 CTCTCCATTTATTATTCATTTT
*
66895961 CTCTCCATTTGTTATTC-TTTT
1 CTCTCCATTTATTATTCATTTT
66895982 CT
1 CT
66895984 TCTTCTGTTC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 6 0.30
22 14 0.70
ACGTcount: A:0.09, C:0.24, G:0.02, T:0.64
Consensus pattern (22 bp):
CTCTCCATTTATTATTCATTTT
Found at i:66897261 original size:27 final size:27
Alignment explanation
Indices: 66897229--66897339 Score: 118
Period size: 27 Copynumber: 4.1 Consensus size: 27
66897219 GGAAGCGTCT
* *
66897229 TGGTGGTTATGCCACAATTATCTGATC
1 TGGTGGCTCTGCCACAATTATCTGATC
* *
66897256 TGGTGGCTCTGCCACATATT-TTTGTTC
1 TGGTGGCTCTGCCACA-ATTATCTGATC
*
66897283 TGGTGGCTCTGCCACGATTATCTGTATC
1 TGGTGGCTCTGCCACAATTATCTG-ATC
* * *
66897311 TGGTGACTCTGTCAC-ATTATCTGTTC
1 TGGTGGCTCTGCCACAATTATCTGATC
66897337 TGG
1 TGG
66897340 CAGCCATGCT
Statistics
Matches: 71, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
26 8 0.11
27 45 0.63
28 18 0.25
ACGTcount: A:0.15, C:0.22, G:0.23, T:0.40
Consensus pattern (27 bp):
TGGTGGCTCTGCCACAATTATCTGATC
Found at i:66897336 original size:54 final size:54
Alignment explanation
Indices: 66897229--66897339 Score: 143
Period size: 54 Copynumber: 2.1 Consensus size: 54
66897219 GGAAGCGTCT
* * * *
66897229 TGGTGGTTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTTTGTTC
1 TGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTTC
* * *
66897283 TGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTTC
1 TGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTTC
66897337 TGG
1 TGG
66897340 CAGCCATGCT
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
54 31 0.63
55 18 0.37
ACGTcount: A:0.15, C:0.22, G:0.23, T:0.40
Consensus pattern (54 bp):
TGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTTC
Found at i:66900270 original size:37 final size:37
Alignment explanation
Indices: 66900197--66900270 Score: 112
Period size: 37 Copynumber: 2.0 Consensus size: 37
66900187 GATATGGTCT
* *
66900197 TACACTAGCTCTCACATATCTGTGCCGGTGCTATGTC
1 TACACTAGCTCTCACATATCTGTGCCGATGCCATGTC
* *
66900234 TACACTATCTCTCACATATCTGTGCTGATGCCATGTC
1 TACACTAGCTCTCACATATCTGTGCCGATGCCATGTC
66900271 CCAGACGTGG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.20, C:0.30, G:0.16, T:0.34
Consensus pattern (37 bp):
TACACTAGCTCTCACATATCTGTGCCGATGCCATGTC
Found at i:66905148 original size:66 final size:66
Alignment explanation
Indices: 66905074--66905204 Score: 262
Period size: 66 Copynumber: 2.0 Consensus size: 66
66905064 TTAAATCCAT
66905074 CCATAACCTTAACTTCTATATGTATTTTCTAACCATCTTATCAACTAAATCATGCCACAAAATAT
1 CCATAACCTTAACTTCTATATGTATTTTCTAACCATCTTATCAACTAAATCATGCCACAAAATAT
66905139 G
66 G
66905140 CCATAACCTTAACTTCTATATGTATTTTCTAACCATCTTATCAACTAAATCATGCCACAAAATAT
1 CCATAACCTTAACTTCTATATGTATTTTCTAACCATCTTATCAACTAAATCATGCCACAAAATAT
66905205 ACCAATTCAT
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 65 1.00
ACGTcount: A:0.37, C:0.24, G:0.04, T:0.35
Consensus pattern (66 bp):
CCATAACCTTAACTTCTATATGTATTTTCTAACCATCTTATCAACTAAATCATGCCACAAAATAT
G
Found at i:66905965 original size:43 final size:43
Alignment explanation
Indices: 66905902--66906068 Score: 178
Period size: 43 Copynumber: 3.9 Consensus size: 43
66905892 AGCTCGTATA
* * * * *
66905902 ATGCC-ATATCCCAGATATGGTCTTACATGTTACCACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
* * * *
66905944 ATGCCAATGTCCCAAACATGGTCTTATACGAAATCATATAAT-G
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAT-ATCG
* *
66905987 ATGCCAATGTCCTAGACATGGTCTTACACGTAATCACA-ATACA
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATAT-CG
* *
66906030 ATGCCAATGTCCCAGACATTGTCTTACATGTAATCACAT
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAT
66906069 CTTGATAATC
Statistics
Matches: 102, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
41 2 0.02
42 5 0.05
43 93 0.91
44 2 0.02
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.29
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
Found at i:66911779 original size:29 final size:29
Alignment explanation
Indices: 66911695--66911803 Score: 114
Period size: 29 Copynumber: 3.8 Consensus size: 29
66911685 TTCACATACT
* * *
66911695 TGTATCTGGCCCATTAAGCCC-AATCATA
1 TGTATATGGCCCATTAGGCCCAAATCACA
* * *
66911723 T-TCATATGGCCCCTTTAGGCTCAAATCACC
1 TGT-ATATGG-CCCATTAGGCCCAAATCACA
66911753 TGTATATGGCCCATTAGGCCCAAATCACA
1 TGTATATGGCCCATTAGGCCCAAATCACA
* *
66911782 TTTATATGGCCCGTTAGGCCCA
1 TGTATATGGCCCATTAGGCCCA
66911804 GACACATTCA
Statistics
Matches: 66, Mismatches: 11, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
27 1 0.02
28 6 0.09
29 46 0.70
30 12 0.18
31 1 0.02
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.28
Consensus pattern (29 bp):
TGTATATGGCCCATTAGGCCCAAATCACA
Found at i:66912053 original size:8 final size:8
Alignment explanation
Indices: 66912032--66912076 Score: 54
Period size: 8 Copynumber: 5.6 Consensus size: 8
66912022 AAACTTTTGG
*
66912032 CTTTTCGG
1 CTTTTCGA
*
66912040 CATTTCGA
1 CTTTTCGA
66912048 CTTTTCGA
1 CTTTTCGA
*
66912056 CTTTTCGG
1 CTTTTCGA
*
66912064 CATTTCGA
1 CTTTTCGA
66912072 CTTTT
1 CTTTT
66912077 GGCGATTCAT
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
8 30 1.00
ACGTcount: A:0.11, C:0.24, G:0.16, T:0.49
Consensus pattern (8 bp):
CTTTTCGA
Found at i:66912061 original size:24 final size:23
Alignment explanation
Indices: 66912024--66912077 Score: 90
Period size: 24 Copynumber: 2.3 Consensus size: 23
66912014 CCGTAGCCAA
*
66912024 ACTTTTGGCTTTTCGGCATTTCG
1 ACTTTTGACTTTTCGGCATTTCG
66912047 ACTTTTCGACTTTTCGGCATTTCG
1 ACTTTT-GACTTTTCGGCATTTCG
66912071 ACTTTTG
1 ACTTTTG
66912078 GCGATTCATA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
23 7 0.24
24 22 0.76
ACGTcount: A:0.11, C:0.22, G:0.19, T:0.48
Consensus pattern (23 bp):
ACTTTTGACTTTTCGGCATTTCG
Found at i:66920555 original size:40 final size:39
Alignment explanation
Indices: 66920488--66920584 Score: 115
Period size: 40 Copynumber: 2.4 Consensus size: 39
66920478 ACCCAAGCAT
*
66920488 CTTCGGGAT-TTAGCCGGATATAACAACTCACATAAATGC
1 CTTCGGG-TCTTAGCCGGATATAACAACTCACACAAATGC
* * *
66920527 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAG-CCGGATATAACAACTCACACAAATGC
*
66920567 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAG-CCGG
66920585 TTATCATCCA
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
38 1 0.02
39 11 0.22
40 38 0.76
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (39 bp):
CTTCGGGTCTTAGCCGGATATAACAACTCACACAAATGC
Found at i:66923015 original size:18 final size:19
Alignment explanation
Indices: 66922980--66923016 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
66922970 TGAGTAGGCC
*
66922980 AAATGGGCCGGAATGGGCT
1 AAATGGGCCCGAATGGGCT
66922999 AAATGGGCCCG-ATGGGCT
1 AAATGGGCCCGAATGGGCT
66923017 GTTGGGCCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.24, C:0.19, G:0.41, T:0.16
Consensus pattern (19 bp):
AAATGGGCCCGAATGGGCT
Found at i:66923201 original size:29 final size:29
Alignment explanation
Indices: 66923090--66923258 Score: 166
Period size: 28 Copynumber: 5.9 Consensus size: 29
66923080 CATGAATATT
* * *
66923090 ATGTGATTTGGGCCAGATGGGCCATATAA
1 ATGTGAATTGGGCCTGATGGGCCATATGA
* * *
66923119 ATGAG-ATTGGGCCTAATGGGCCATATAA
1 ATGTGAATTGGGCCTGATGGGCCATATGA
* * * *
66923147 ATGAG-ATTGGGCCTAATAGGCAATATGA
1 ATGTGAATTGGGCCTGATGGGCCATATGA
* *
66923175 ATGTGAATTAGGCCTGATGGACCATATGA
1 ATGTGAATTGGGCCTGATGGGCCATATGA
*
66923204 ATGTGAATTGGGCCTGATGGGCTATATGA
1 ATGTGAATTGGGCCTGATGGGCCATATGA
* *
66923233 ATGAG-ATTGGGCC-AAGTGGGCCATAT
1 ATGTGAATTGGGCCTGA-TGGGCCATAT
66923259 ACATGTATGA
Statistics
Matches: 119, Mismatches: 19, Indels: 5
0.83 0.13 0.03
Matches are distributed among these distances:
27 1 0.01
28 66 0.55
29 52 0.44
ACGTcount: A:0.30, C:0.13, G:0.31, T:0.27
Consensus pattern (29 bp):
ATGTGAATTGGGCCTGATGGGCCATATGA
Found at i:66946065 original size:40 final size:40
Alignment explanation
Indices: 66945970--66946173 Score: 270
Period size: 40 Copynumber: 5.1 Consensus size: 40
66945960 TGGATGATAA
* *
66945970 CCGGGCTGAGTCCCGAAGGCATTT-TGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG--AGTAACTA-TAT
66946011 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAACTATAT
*
66946051 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAACTATAT
* * *
66946091 CCGGGCTAAGTCCCGAAGGTATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAACTATAT
* * * *
66946131 CCGGGCTATGTCCCAAAGGCA-TTGAGCGAGTAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAACTATAT
66946170 CCGG
1 CCGG
66946174 TTAAATCCTG
Statistics
Matches: 149, Mismatches: 12, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
39 19 0.13
40 103 0.69
41 23 0.15
42 4 0.03
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAACTATAT
Found at i:66962034 original size:38 final size:38
Alignment explanation
Indices: 66961968--66962131 Score: 152
Period size: 38 Copynumber: 4.1 Consensus size: 38
66961958 TGTGACTAGT
66961968 TCCGGGCTAAAGTCCCCGAAGGCATTGTGGCGAGTAACTATA
1 TCCGGGCT-AAGT-CCCG-AGGCATTG-GGCGAGTAACTATA
*
66962010 TCCGGGCTAAGT-CCGAGGCATTGTGCGAGTTAACTATA
1 TCCGGGCTAAGTCCCGAGGCATTGGGCGAG-TAACTATA
* * *
66962048 TCCGGGCTAAGTCCCGAAGTATTGGTGCGAGTTAC-AGTAA
1 TCCGGGCTAAGTCCCGAGGCATTGG-GCGAGTAACTA-T-A
* ** * *
66962088 TCCGGGCTATGTCCAAAAGGCATTGAGCGAGTAGCTATA
1 TCCGGGCTAAGTCC-CGAGGCATTGGGCGAGTAACTATA
66962127 TCCGG
1 TCCGG
66962132 TTAAATCCTG
Statistics
Matches: 102, Mismatches: 13, Indels: 17
0.77 0.10 0.13
Matches are distributed among these distances:
37 5 0.05
38 29 0.28
39 22 0.22
40 27 0.26
41 11 0.11
42 8 0.08
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.24
Consensus pattern (38 bp):
TCCGGGCTAAGTCCCGAGGCATTGGGCGAGTAACTATA
Found at i:66962091 original size:40 final size:39
Alignment explanation
Indices: 66961968--66962131 Score: 165
Period size: 40 Copynumber: 4.1 Consensus size: 39
66961958 TGTGACTAGT
66961968 TCCGGGCTAAAGTCCCCGAAGGCATTGTGGCGAG-TAACTATA
1 TCCGGGCT-AAGT-CCCGAA-GCATTGT-GCGAGTTAACTATA
*
66962010 TCCGGGCTAAGT-CCGAGGCATTGTGCGAGTTAACTATA
1 TCCGGGCTAAGTCCCGAAGCATTGTGCGAGTTAACTATA
* *
66962048 TCCGGGCTAAGTCCCGAAGTATTGGTGCGAGTTACAGTA-A
1 TCCGGGCTAAGTCCCGAAGCATT-GTGCGAGTTA-ACTATA
* ** * *
66962088 TCCGGGCTATGTCCAAAAGGCATTGAGCGAG-TAGCTATA
1 TCCGGGCTAAGTCCCGAA-GCATTGTGCGAGTTAACTATA
66962127 TCCGG
1 TCCGG
66962132 TTAAATCCTG
Statistics
Matches: 105, Mismatches: 11, Indels: 15
0.80 0.08 0.11
Matches are distributed among these distances:
37 5 0.05
38 29 0.28
39 20 0.19
40 32 0.30
41 11 0.10
42 8 0.08
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGCATTGTGCGAGTTAACTATA
Found at i:66975408 original size:40 final size:40
Alignment explanation
Indices: 66975324--66975507 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
66975314 TTGAATGCTG
* * * *
66975324 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
66975363 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
66975404 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
66975444 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
66975484 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
66975508 GAATGAGTTA
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 2 0.02
40 111 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:66975461 original size:80 final size:81
Alignment explanation
Indices: 66975324--66975504 Score: 221
Period size: 80 Copynumber: 2.3 Consensus size: 81
66975314 TTGAATGCTG
* * *
66975324 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGTATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
66975388 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
66975404 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
66975465 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
66975484 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
66975505 ATTGAATGAG
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 4 0.04
80 76 0.85
81 9 0.10
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:66975528 original size:39 final size:38
Alignment explanation
Indices: 66975405--66975554 Score: 122
Period size: 40 Copynumber: 3.8 Consensus size: 38
66975395 GTTATTAATT
* ** * *
66975405 CCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAATT
1 CCGGGTTAAGTCCCGAAGG-CATTGAACGAGTTACT-ATA
** * *
66975445 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 CCGGGTTAAGTCCCGAAGGCATT-GAACGAGTTACT-ATA
*
66975484 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATGA
1 -CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTAT-A
* *
66975524 CCGGGCTATGTCCCGAAGGCACTTGAACGAG
1 CCGGGTTAAGTCCCGAAGGCA-TTGAACGAG
66975555 GAGCTATATC
Statistics
Matches: 92, Mismatches: 13, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
39 32 0.35
40 60 0.65
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.25
Consensus pattern (38 bp):
CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTATA
Found at i:66983293 original size:40 final size:40
Alignment explanation
Indices: 66983209--66983392 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
66983199 TTGAATGCTG
* * * *
66983209 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
66983248 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
66983289 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
66983329 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
66983369 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
66983393 GAATGAGTTA
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 2 0.02
40 111 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:66983346 original size:80 final size:81
Alignment explanation
Indices: 66983209--66983389 Score: 221
Period size: 80 Copynumber: 2.3 Consensus size: 81
66983199 TTGAATGCTG
* * *
66983209 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGTATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
66983273 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
66983289 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
66983350 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
66983369 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
66983390 ATTGAATGAG
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 4 0.04
80 76 0.85
81 9 0.10
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:66983413 original size:39 final size:38
Alignment explanation
Indices: 66983290--66983439 Score: 122
Period size: 40 Copynumber: 3.8 Consensus size: 38
66983280 GTTATTAATT
* ** * *
66983290 CCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAATT
1 CCGGGTTAAGTCCCGAAGG-CATTGAACGAGTTACT-ATA
** * *
66983330 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 CCGGGTTAAGTCCCGAAGGCATT-GAACGAGTTACT-ATA
*
66983369 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATGA
1 -CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTAT-A
* *
66983409 CCGGGCTATGTCCCGAAGGCACTTGAACGAG
1 CCGGGTTAAGTCCCGAAGGCA-TTGAACGAG
66983440 GAGCTATATC
Statistics
Matches: 92, Mismatches: 13, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
39 32 0.35
40 60 0.65
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.25
Consensus pattern (38 bp):
CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTATA
Found at i:66984951 original size:27 final size:27
Alignment explanation
Indices: 66984919--66985098 Score: 272
Period size: 27 Copynumber: 6.7 Consensus size: 27
66984909 CACGAGGGGC
66984919 AAAATAGTAATTCTGTAAATCGAGGGT
1 AAAATAGTAATTCTGTAAATCGAGGGT
*
66984946 AAAATAGTAATTCTGTAAATCAAGGGT
1 AAAATAGTAATTCTGTAAATCGAGGGT
* *
66984973 AAAA-AGGTCATTCTGTAAATCGCGGGT
1 AAAATA-GTAATTCTGTAAATCGAGGGT
* *
66985000 AAAATAGTAATTCTATCAATCGAGGGT
1 AAAATAGTAATTCTGTAAATCGAGGGT
*
66985027 AAAATGGTAATTCTGTAAATCGAGGGT
1 AAAATAGTAATTCTGTAAATCGAGGGT
66985054 AAAATAGTAATTCTGTAAATCGAGGGT
1 AAAATAGTAATTCTGTAAATCGAGGGT
* *
66985081 AAAATGGTAATTTTGTAA
1 AAAATAGTAATTCTGTAA
66985099 TTTGGGGGTA
Statistics
Matches: 137, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
26 1 0.01
27 135 0.99
28 1 0.01
ACGTcount: A:0.40, C:0.08, G:0.22, T:0.30
Consensus pattern (27 bp):
AAAATAGTAATTCTGTAAATCGAGGGT
Found at i:66985131 original size:54 final size:54
Alignment explanation
Indices: 66985086--66985260 Score: 183
Period size: 54 Copynumber: 3.3 Consensus size: 54
66985076 AGGGTAAAAT
** *
66985086 GGTAATTTTGTAATTTGGGGGTACTTTGATAATTTTACAAGTCGAGGGTATTTC
1 GGTAATTTTGTAAACTGGGGGTACTTTGATAATTTTACAAATCGAGGGTATTTC
** * * * *
66985140 AATAATTTTGCAAACTGAGGGTA-TTTCGATAATTTTACAAATCGAGGATATTTG
1 GGTAATTTTGTAAACTGGGGGTACTTT-GATAATTTTACAAATCGAGGGTATTTC
* * * *
66985194 GGTAATTTTATAAACTGGGGGTACTTTGGTAATTTTACAACT-GGGGGTATTTC
1 GGTAATTTTGTAAACTGGGGGTACTTTGATAATTTTACAAATCGAGGGTATTTC
** *
66985247 AATAATTTGGTAAA
1 GGTAATTTTGTAAA
66985261 GTAAAGTATT
Statistics
Matches: 96, Mismatches: 23, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
53 21 0.22
54 72 0.75
55 3 0.03
ACGTcount: A:0.30, C:0.08, G:0.23, T:0.39
Consensus pattern (54 bp):
GGTAATTTTGTAAACTGGGGGTACTTTGATAATTTTACAAATCGAGGGTATTTC
Found at i:66985134 original size:27 final size:27
Alignment explanation
Indices: 66985104--66985254 Score: 132
Period size: 27 Copynumber: 5.6 Consensus size: 27
66985094 TGTAATTTGG
*
66985104 GGGTACTTT-GATAATTTTAC-AAGTCGA
1 GGGTA-TTTCGATAATTTTACAAACT-GA
* *
66985131 GGGTATTTCAATAATTTTGCAAACTGA
1 GGGTATTTCGATAATTTTACAAACTGA
66985158 GGGTATTTCGATAATTTTACAAA-TCGA
1 GGGTATTTCGATAATTTTACAAACT-GA
* * * * *
66985185 GGATATTTGGGTAATTTTATAAACTGG
1 GGGTATTTCGATAATTTTACAAACTGA
* *
66985212 GGGTACTTT-GGTAATTTTAC-AACTGG
1 GGGTA-TTTCGATAATTTTACAAACTGA
*
66985238 GGGTATTTCAATAATTT
1 GGGTATTTCGATAATTT
66985255 GGTAAAGTAA
Statistics
Matches: 104, Mismatches: 14, Indels: 13
0.79 0.11 0.10
Matches are distributed among these distances:
25 3 0.03
26 21 0.20
27 73 0.70
28 7 0.07
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.39
Consensus pattern (27 bp):
GGGTATTTCGATAATTTTACAAACTGA
Found at i:66985146 original size:108 final size:107
Alignment explanation
Indices: 66984926--66985253 Score: 272
Period size: 108 Copynumber: 3.0 Consensus size: 107
66984916 GGCAAAATAG
* * * *
66984926 TAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAAAGGTCATTCTGTAA
1 TAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTGTAA
* * *** * ** **
66984991 ATCGCGGGTAAAAT-AGTAATTCTATCAATCGAGGGTAAAAT-GG
66 ATTGGGGGTACTTTGA-TAATTTTA-CAATCGAGGGT-ATTTCAA
66985034 TAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTGTAA
1 TAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTGTAA
*
66985099 TTTGGGGGTACTTTGATAATTTTACAAGTCGAGGGTATTTCAA
66 ATTGGGGGTACTTTGATAATTTTACAA-TCGAGGGTATTTCAA
* * ** * * ** * ** *
66985142 TAATTTTGCAAA-CTGAGGGT-ATTTCGATAATTTTACAAATCGAGGAT-ATTTGGGTAATTTTA
1 TAATTCTGTAAATC-GAGGGTAAAATAG-TAATTCTGTAAATCGAGGGTAAAAT-GGTAATTTTG
* * *
66985204 TAAACTGGGGGTACTTTGGTAATTTTACAA-CTGGGGGTATTTCAA
63 TAAATTGGGGGTACTTTGATAATTTTACAATC-GAGGGTATTTCAA
66985249 TAATT
1 TAATT
66985254 TGGTAAAGTA
Statistics
Matches: 182, Mismatches: 31, Indels: 15
0.80 0.14 0.07
Matches are distributed among these distances:
106 1 0.01
107 28 0.15
108 152 0.84
109 1 0.01
ACGTcount: A:0.34, C:0.09, G:0.22, T:0.35
Consensus pattern (107 bp):
TAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTGTAA
ATTGGGGGTACTTTGATAATTTTACAATCGAGGGTATTTCAA
Found at i:66986002 original size:55 final size:55
Alignment explanation
Indices: 66985879--66986118 Score: 306
Period size: 55 Copynumber: 4.4 Consensus size: 55
66985869 AAGCTTTTTG
* * * *
66985879 ATGTCTTGACATGGTCTTACATGGTATCTTTGCCTTATA-AAACTCACCAATGCC
1 ATGTCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCACCAATGCC
* * *
66985933 ATGCCTTGGCATGGTCTTACATGGGACCTTTTCCTTATAGTAACTCATCAATGCC
1 ATGTCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCACCAATGCC
* * * *
66985988 ATGTCTTGACATGGTCTTACACGGTATCTTTGCCTTAT-G-AACTCACCAATGCC
1 ATGTCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCACCAATGCC
* * * * * *
66986041 ATGCCTTGGCATGGTCTTATATGGGACCTTTTCCTTGTAGTAACTCATCAATGTC
1 ATGTCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCACCAATGCC
66986096 ATGTCTTGGCATGGTCTTACATG
1 ATGTCTTGGCATGGTCTTACATG
66986119 ATATCCTTAT
Statistics
Matches: 157, Mismatches: 26, Indels: 5
0.84 0.14 0.03
Matches are distributed among these distances:
53 43 0.27
54 36 0.23
55 78 0.50
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.36
Consensus pattern (55 bp):
ATGTCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCACCAATGCC
Found at i:66986069 original size:108 final size:109
Alignment explanation
Indices: 66985879--66986116 Score: 415
Period size: 108 Copynumber: 2.2 Consensus size: 109
66985869 AAGCTTTTTG
*
66985879 ATGTCTTGACATGGTCTTACATGGTATCTTTGCCTTATAAAACTCACCAATGCCATGCCTTGGCA
1 ATGTCTTGACATGGTCTTACACGGTATCTTTGCCTTATAAAACTCACCAATGCCATGCCTTGGCA
66985944 TGGTCTTACATGGGACCTTTTCCTTATAGTAACTCATCAATGCC
66 TGGTCTTACATGGGACCTTTTCCTTATAGTAACTCATCAATGCC
*
66985988 ATGTCTTGACATGGTCTTACACGGTATCTTTGCCTTAT-GAACTCACCAATGCCATGCCTTGGCA
1 ATGTCTTGACATGGTCTTACACGGTATCTTTGCCTTATAAAACTCACCAATGCCATGCCTTGGCA
* * *
66986052 TGGTCTTATATGGGACCTTTTCCTTGTAGTAACTCATCAATGTC
66 TGGTCTTACATGGGACCTTTTCCTTATAGTAACTCATCAATGCC
*
66986096 ATGTCTTGGCATGGTCTTACA
1 ATGTCTTGACATGGTCTTACA
66986117 TGATATCCTT
Statistics
Matches: 123, Mismatches: 6, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
108 86 0.70
109 37 0.30
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.36
Consensus pattern (109 bp):
ATGTCTTGACATGGTCTTACACGGTATCTTTGCCTTATAAAACTCACCAATGCCATGCCTTGGCA
TGGTCTTACATGGGACCTTTTCCTTATAGTAACTCATCAATGCC
Found at i:66986156 original size:47 final size:47
Alignment explanation
Indices: 66986105--66986226 Score: 201
Period size: 47 Copynumber: 2.6 Consensus size: 47
66986095 CATGTCTTGG
*
66986105 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGATATCCTTGTCTTACCAAATGCCATGTTCCAAA
*
66986152 CATGGTCTTACATGGA-ATCCTTGTCTTACCAAATGCCATGTTCGAAA
1 CATGGTCTTACAT-GATATCCTTGTCTTACCAAATGCCATGTTCCAAA
*
66986199 CATGGTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGATATCCTTGTCTTA
66986227 GTGCCAATGC
Statistics
Matches: 70, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
46 1 0.01
47 67 0.96
48 2 0.03
ACGTcount: A:0.26, C:0.24, G:0.15, T:0.35
Consensus pattern (47 bp):
CATGGTCTTACATGATATCCTTGTCTTACCAAATGCCATGTTCCAAA
Found at i:66993318 original size:48 final size:48
Alignment explanation
Indices: 66993186--66993412 Score: 209
Period size: 48 Copynumber: 4.8 Consensus size: 48
66993176 GTTATGTACA
* *
66993186 ATCCCATGTAAGACCATGTCTGGGACATGGC-TCTCGCATCGATATGTA
1 ATCCCATGTAAGACCATGTCTGGGACATGGCAT-TGGCATCGATATGTG
**** *
66993234 ATTTGGTGTAAGACCATAGT-TGGG-C-T---ATCGGCATCGATATGTG
1 ATCCCATGTAAGACCAT-GTCTGGGACATGGCATTGGCATCGATATGTG
* ** **
66993277 ATCCCATGTAAGACTATGTCTGGGACATGGCATTGGCATCGACCTACG
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTG
* * **
66993325 ATCCCATGTAAGACAATGTTTGGGACATGATATTGGCATCGATATGTG
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTG
* *
66993373 ATCCCATGTAAGACCATATCCT-GGATATGGCATTGGCATC
1 ATCCCATGTAAGACCATGT-CTGGGACATGGCATTGGCATC
66993413 CTACCATGTG
Statistics
Matches: 139, Mismatches: 31, Indels: 18
0.74 0.16 0.10
Matches are distributed among these distances:
42 2 0.01
43 28 0.20
44 2 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 101 0.73
49 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.29
Consensus pattern (48 bp):
ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTG
Found at i:66994694 original size:76 final size:76
Alignment explanation
Indices: 66994605--66994760 Score: 276
Period size: 76 Copynumber: 2.1 Consensus size: 76
66994595 CGGCCTAAGC
*
66994605 ACACGAGCGTGTGTCTTGGCCGTGTGACCCTAATTGTATTGATGACATCATAAATAGAGAGTTAC
1 ACACGAGCATGTGTCTTGGCCGTGTGACCCTAATTGTATTGATGACATCATAAATAGAGAGTTAC
66994670 ACGAATTGAGG
66 ACGAATTGAGG
*
66994681 ACACGAGTATGTGTCTTGGCCGTGTGACCCTAATTGTATTGATGACATCATAAATAGAGAGTTAC
1 ACACGAGCATGTGTCTTGGCCGTGTGACCCTAATTGTATTGATGACATCATAAATAGAGAGTTAC
**
66994746 ACGGGTTGAGG
66 ACGAATTGAGG
66994757 ACAC
1 ACAC
66994761 AGGGGTGTCC
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
76 76 1.00
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.28
Consensus pattern (76 bp):
ACACGAGCATGTGTCTTGGCCGTGTGACCCTAATTGTATTGATGACATCATAAATAGAGAGTTAC
ACGAATTGAGG
Found at i:67003981 original size:48 final size:48
Alignment explanation
Indices: 67003868--67003986 Score: 145
Period size: 48 Copynumber: 2.5 Consensus size: 48
67003858 GGGCTATCGA
* * * *
67003868 CATCGATATGT-GATCCCATGTAAGACCATGTTTGGGTCATGGCATTGG
1 CATCGATATGTAG-TCCCATGTAAGACCATGTCTAGGACATGACATTGG
*
67003916 CATCGACCTACG-A-TCCCATGTAAGACCATGTCTAGGACATGACATTGG
1 CATCGA--TATGTAGTCCCATGTAAGACCATGTCTAGGACATGACATTGG
67003964 CATCGATATGTAGTCCCATGTAA
1 CATCGATATGTAGTCCCATGTAA
67003987 AACTATATCT
Statistics
Matches: 60, Mismatches: 6, Indels: 10
0.79 0.08 0.13
Matches are distributed among these distances:
46 3 0.05
47 1 0.02
48 53 0.88
50 3 0.05
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (48 bp):
CATCGATATGTAGTCCCATGTAAGACCATGTCTAGGACATGACATTGG
Found at i:67006640 original size:22 final size:22
Alignment explanation
Indices: 67006615--67006668 Score: 81
Period size: 22 Copynumber: 2.5 Consensus size: 22
67006605 ACGGCTCAAC
* *
67006615 GCCGTAGACAGGACAACATATA
1 GCCGTAAACAGGACAACACATA
67006637 GCCGTAAACAGGACAACACATA
1 GCCGTAAACAGGACAACACATA
*
67006659 GCTGTAAACA
1 GCCGTAAACA
67006669 TCACAGCAAC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.43, C:0.24, G:0.20, T:0.13
Consensus pattern (22 bp):
GCCGTAAACAGGACAACACATA
Found at i:67006915 original size:41 final size:41
Alignment explanation
Indices: 67006851--67006972 Score: 190
Period size: 41 Copynumber: 3.0 Consensus size: 41
67006841 TAAAAGCCAA
* * * *
67006851 CGGTGGATCCACGATCGTCAAGCAACCATGCAATCCTTAAT
1 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAC
*
67006892 CGGTGGATCCACGGTCGTTAAGCAACCATGCGATCCTCAAC
1 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAC
*
67006933 CGGTGGATCCACGGTCGTCAAGCAAACATGCGATCCTCAA
1 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAA
67006973 TTTCTTCCTC
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 74 1.00
ACGTcount: A:0.27, C:0.30, G:0.23, T:0.20
Consensus pattern (41 bp):
CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAC
Found at i:67007263 original size:27 final size:27
Alignment explanation
Indices: 67007211--67007421 Score: 203
Period size: 27 Copynumber: 7.8 Consensus size: 27
67007201 TTTCACCCTA
* * * * *
67007211 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTGCAAAT
*
67007238 CAAGGGTATTTTGGTAATTTTGCAAAC
1 CAAGGGTATTTTGGTAATTTTGCAAAT
* **
67007265 CAATGGTATTTCT-GTAATTTTTTAAAGT
1 CAAGGGTATTT-TGGTAATTTTGCAAA-T
* *
67007293 CAAGGGTATTTTTGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTGCAAAT
* * *
67007320 -AGGGGTATTTCT-ATAATTTTCCAAAT
1 CAAGGGTATTT-TGGTAATTTTGCAAAT
* * *
67007346 CAAAGATATTTTGGTAATTTTCCAAAT
1 CAAGGGTATTTTGGTAATTTTGCAAAT
* *
67007373 CAGGGGTATTTTGGTAATTTTGCTAAT
1 CAAGGGTATTTTGGTAATTTTGCAAAT
67007400 CAAGGGTATTTTGGTAATTTTG
1 CAAGGGTATTTTGGTAATTTTG
67007422 TAAACTGAGG
Statistics
Matches: 154, Mismatches: 24, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
26 21 0.14
27 110 0.71
28 23 0.15
ACGTcount: A:0.29, C:0.09, G:0.19, T:0.42
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTGCAAAT
Found at i:67007458 original size:26 final size:26
Alignment explanation
Indices: 67007429--67007497 Score: 104
Period size: 27 Copynumber: 2.6 Consensus size: 26
67007419 TTGTAAACTG
67007429 AGGGTA-TTCAGTAATTCTACCCTAC
1 AGGGTATTTCAGTAATTCTACCCTAC
*
67007454 AAGGGCATTTCAGTAATTCTACCCTAC
1 -AGGGTATTTCAGTAATTCTACCCTAC
67007481 AGAGGTATTTCAGTAAT
1 AG-GGTATTTCAGTAAT
67007498 ATTAGCCCAC
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
26 7 0.18
27 32 0.82
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.32
Consensus pattern (26 bp):
AGGGTATTTCAGTAATTCTACCCTAC
Found at i:67012806 original size:42 final size:42
Alignment explanation
Indices: 67012738--67012830 Score: 118
Period size: 42 Copynumber: 2.2 Consensus size: 42
67012728 CATCGTTTAC
* *
67012738 TTGATGCCATAGTCCAACTATAGTCTTACACGAACTCTCATA
1 TTGATGCCATAGTCCAACTATAGTCTTACACGAAATCACATA
*
67012780 TTGATGCCAT-GTCCCAGAC-ATGGTCTTACACGAAATCACATA
1 TTGATGCCATAGT-CCA-ACTATAGTCTTACACGAAATCACATA
*
67012822 TCGATGCCA
1 TTGATGCCA
67012831 ACGCCATATC
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
41 2 0.04
42 41 0.91
43 2 0.04
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (42 bp):
TTGATGCCATAGTCCAACTATAGTCTTACACGAAATCACATA
Found at i:67012856 original size:48 final size:48
Alignment explanation
Indices: 67012783--67013059 Score: 428
Period size: 48 Copynumber: 5.8 Consensus size: 48
67012773 TCTCATATTG
* **
67012783 ATGCCATGTCCCAGACATGGTCTTACACGAAATCACATATCGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
* * **
67012831 ACGCCATATCCCAGTTATGGTCTTACATGGGATCACATATCGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
* *
67012879 ATGCCATGTCCTAGACATGGTCTTACATGGGATCACATATTGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
*
67012927 ATGCCATGTCCTAGACATGGTCTTACATGGGATCACATATCGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
* *
67012975 ATACCATGTCCCAGACATGGTCTTACATGGGATCAAATATCGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
* *
67013023 ATTCCATGTCCCAGACATGGTCTTACATGGGACCACA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACA
67013060 ATGCCATAGC
Statistics
Matches: 209, Mismatches: 20, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 209 1.00
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
Found at i:67019664 original size:27 final size:27
Alignment explanation
Indices: 67019611--67019664 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 27
67019601 ATATATAAAT
* *
67019611 ATTATAAAATAATTATTTTGTACTTAA
1 ATTATAAAATAATTAATTTGTAATTAA
*
67019638 ATTATTAACATAATTAATTT-TAATTAA
1 ATTA-TAAAATAATTAATTTGTAATTAA
67019665 TTTTATAATA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
27 10 0.43
28 13 0.57
ACGTcount: A:0.46, C:0.04, G:0.02, T:0.48
Consensus pattern (27 bp):
ATTATAAAATAATTAATTTGTAATTAA
Found at i:67019672 original size:22 final size:22
Alignment explanation
Indices: 67019647--67019690 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
67019637 AATTATTAAC
* *
67019647 ATAATTAATTTTAATTAATTTT
1 ATAATAAATTTTAATAAATTTT
*
67019669 ATAATAAATTTTGATAAATTTT
1 ATAATAAATTTTAATAAATTTT
67019691 TATCATTTTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (22 bp):
ATAATAAATTTTAATAAATTTT
Found at i:67025275 original size:27 final size:26
Alignment explanation
Indices: 67025227--67025278 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
67025217 GCGAGGCTGT
*
67025227 CAGATATTGTGACGAAGTCACCAGAG
1 CAGATATTGTGACGAAGCCACCAGAG
* *
67025253 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
67025279 TTGAAACGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.33, C:0.21, G:0.29, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAG
Found at i:67025981 original size:28 final size:27
Alignment explanation
Indices: 67025931--67026019 Score: 133
Period size: 27 Copynumber: 3.3 Consensus size: 27
67025921 AGGGCAAAAT
* * * *
67025931 GGTAATTTTACCTCACAAGGGTATCTC
1 GGTAATTCTACCTTACAGGGGTATTTC
67025958 GGTAATTCTAACCTTACAGGGGTATTTC
1 GGTAATTCT-ACCTTACAGGGGTATTTC
67025986 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCTTACAGGGGTATTTC
67026013 GGTAATT
1 GGTAATT
67026020 GTACAACTTA
Statistics
Matches: 57, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
27 33 0.58
28 24 0.42
ACGTcount: A:0.25, C:0.18, G:0.21, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCTTACAGGGGTATTTC
Found at i:67032648 original size:27 final size:26
Alignment explanation
Indices: 67032600--67032659 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
67032590 GCGAAGCTGC
* *
67032600 CAGATATTGTGACGAAGTCACCATATA
1 CAGATATTGTGACGAAGCCACCA-AAA
* * *
67032627 CAGATATTGTGGCTAGGCCACCAAAA
1 CAGATATTGTGACGAAGCCACCAAAA
67032653 CAGATAT
1 CAGATAT
67032660 ATATATGTGG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 9 0.32
27 19 0.68
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.23
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAAAA
Found at i:67032746 original size:27 final size:26
Alignment explanation
Indices: 67032698--67032749 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
67032688 GCGAGGCTGC
*
67032698 CAGATATTGTGACGAAGTCACCAGAG
1 CAGATATTGTGACGAAGCCACCAGAG
* *
67032724 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
67032750 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.33, C:0.21, G:0.29, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAG
Found at i:67033454 original size:27 final size:27
Alignment explanation
Indices: 67033396--67033460 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
67033386 AGGGGCAAAA
*
67033396 TGGTAATTTTACCCCACAAGGGTATCT
1 TGGTAATTCTACCCCACAAGGGTATCT
* * * * *
67033423 CGGTAATTCTACCCTATAGGGGTATTT
1 TGGTAATTCTACCCCACAAGGGTATCT
67033450 TGGT-ATTCTAC
1 TGGTAATTCTAC
67033461 AACTTATCCA
Statistics
Matches: 31, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
26 7 0.23
27 24 0.77
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.37
Consensus pattern (27 bp):
TGGTAATTCTACCCCACAAGGGTATCT
Found at i:67037395 original size:46 final size:46
Alignment explanation
Indices: 67037343--67037440 Score: 178
Period size: 46 Copynumber: 2.1 Consensus size: 46
67037333 AGTGTGCTCT
*
67037343 CTGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATAAAATGTGTAAGACCATGGTTGAAAGATAACATGGCAAC
*
67037389 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATAACATGGCAAC
1 CTGATATAAAATGTGTAAGACCATGGTTGAAAGATAACATGGCAAC
67037435 CTGATA
1 CTGATA
67037441 AGACCATTGT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 50 1.00
ACGTcount: A:0.39, C:0.14, G:0.22, T:0.24
Consensus pattern (46 bp):
CTGATATAAAATGTGTAAGACCATGGTTGAAAGATAACATGGCAAC
Found at i:67037453 original size:35 final size:35
Alignment explanation
Indices: 67037404--67037475 Score: 126
Period size: 35 Copynumber: 2.1 Consensus size: 35
67037394 ATGAAATGTG
67037404 TAAGACCATGGTTGAAAGATAACATGGCAACCTGA
1 TAAGACCATGGTTGAAAGATAACATGGCAACCTGA
* *
67037439 TAAGACCATTGTTGAAAGATACCATGGCAACCTGA
1 TAAGACCATGGTTGAAAGATAACATGGCAACCTGA
67037474 TA
1 TA
67037476 TGAAATGTGT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.39, C:0.18, G:0.21, T:0.22
Consensus pattern (35 bp):
TAAGACCATGGTTGAAAGATAACATGGCAACCTGA
Found at i:67037493 original size:81 final size:81
Alignment explanation
Indices: 67037358--67037521 Score: 301
Period size: 81 Copynumber: 2.0 Consensus size: 81
67037348 ATAAAATGTG
67037358 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGA
67037423 TAACATGGCAACCTGA
66 TAACATGGCAACCTGA
*
67037439 TAAGACCATTGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGA
* *
67037504 TACCATGGCAACGTGA
66 TAACATGGCAACCTGA
67037520 TA
1 TA
67037522 TGAAATGAAT
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
81 80 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (81 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGA
TAACATGGCAACCTGA
Found at i:67037506 original size:46 final size:46
Alignment explanation
Indices: 67037438--67037697 Score: 342
Period size: 46 Copynumber: 5.7 Consensus size: 46
67037428 TGGCAACCTG
* * * *
67037438 ATAAGACCATTGTTGAAAGATACCATGGCAACCTGATATGAAATGT
1 ATAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGA
* * *
67037484 GTAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGA
1 ATAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGA
**
67037530 ATAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAAATGA
1 ATAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGA
*** *
67037576 ATAAGACCATGGTTGAAAGATACCATGGCAGGGTGACATAAAATGA
1 ATAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGA
*
67037622 ATAAGACCATCGTTGAAAGATACCATGGCAACATGACA-GAAAATGA
1 ATAAGACCATGGTTGAAAGATACCATGGCAACATGACATG-AAATGA
* * * *
67037668 GTAAGACCATAGTTGAAAGACACTATGGCA
1 ATAAGACCATGGTTGAAAGATACCATGGCA
67037698 TTATGTCAAA
Statistics
Matches: 189, Mismatches: 24, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
46 189 1.00
ACGTcount: A:0.41, C:0.15, G:0.23, T:0.20
Consensus pattern (46 bp):
ATAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGA
Found at i:67038004 original size:16 final size:17
Alignment explanation
Indices: 67037983--67038015 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
67037973 ATGATGGAGC
67037983 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
67037999 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
67038016 TACTTATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:67041314 original size:43 final size:43
Alignment explanation
Indices: 67041239--67041336 Score: 103
Period size: 43 Copynumber: 2.3 Consensus size: 43
67041229 ATATGTGTTC
* *
67041239 TTGAGTAAGACCACGTCTAGGACATTGGCATCG--ATATGTGAT
1 TTGAGTAAGACCACGTCTAGGACATCGACATCGTAAT-TGTGAT
* *
67041281 TTCGAGTAAGACCATGTCT-GAGATATCGACATCGTAATTGTGAT
1 TT-GAGTAAGACCACGTCTAG-GACATCGACATCGTAATTGTGAT
*
67041325 TTGTGTAAGACC
1 TTGAGTAAGACC
67041337 TTGTTTGGGA
Statistics
Matches: 47, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
42 3 0.06
43 34 0.72
44 8 0.17
45 2 0.04
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (43 bp):
TTGAGTAAGACCACGTCTAGGACATCGACATCGTAATTGTGAT
Found at i:67048245 original size:42 final size:42
Alignment explanation
Indices: 67048176--67048344 Score: 155
Period size: 43 Copynumber: 4.0 Consensus size: 42
67048166 AGGATTTCTA
* * * *
67048176 ATATGTGTTCTCGCGTAAGATCATGTCTGAGACGTTGGCATCG
1 ATATGTGAT-TCGAGTAAGACCATGTCTGGGACGTTGGCATCG
* * *
67048219 ATATGTGATTCGAGTGAGACCATGTCTGGGACATCGGCATCG
1 ATATGTGATTCGAGTAAGACCATGTCTGGGACGTTGGCATCG
* *
67048261 -TAATTGTGATTCGTGTAAGACCCTGTCTGGGACAG-TGGCATCG
1 AT-A-TGTGATTCGAGTAAGACCATGTCTGGGAC-GTTGGCATCG
* * *
67048304 ACATGTGATTAC-ATGTAAGACCACGTCTGCGACGTTGGCAT
1 ATATGTGATT-CGA-GTAAGACCATGTCTGGGACGTTGGCAT
67048345 TGTACGATAT
Statistics
Matches: 102, Mismatches: 17, Indels: 14
0.77 0.13 0.11
Matches are distributed among these distances:
41 1 0.01
42 36 0.35
43 65 0.64
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (42 bp):
ATATGTGATTCGAGTAAGACCATGTCTGGGACGTTGGCATCG
Found at i:67048632 original size:41 final size:41
Alignment explanation
Indices: 67048575--67048658 Score: 168
Period size: 41 Copynumber: 2.0 Consensus size: 41
67048565 AATGTATAAG
67048575 TATGTGATTTTAATGTTTGATTTTTGAGCTTATATTCGGCC
1 TATGTGATTTTAATGTTTGATTTTTGAGCTTATATTCGGCC
67048616 TATGTGATTTTAATGTTTGATTTTTGAGCTTATATTCGGCC
1 TATGTGATTTTAATGTTTGATTTTTGAGCTTATATTCGGCC
67048657 TA
1 TA
67048659 ATGTTACATG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.20, C:0.10, G:0.19, T:0.51
Consensus pattern (41 bp):
TATGTGATTTTAATGTTTGATTTTTGAGCTTATATTCGGCC
Found at i:67049948 original size:28 final size:27
Alignment explanation
Indices: 67049912--67050010 Score: 74
Period size: 28 Copynumber: 3.4 Consensus size: 27
67049902 GAGTTAACTA
67049912 GGCCTTAGCCCATATCAATATTAATCTG
1 GGCC-TAGCCCATATCAATATTAATCTG
* *
67049940 GGCCATAGCCCCT-TACAATATCAGAGTATACTG
1 GGCC-TAGCCCATAT-CAATAT--TA--AT-CTG
* *
67049973 GGACTAGCCCATATCAGTATTAATCTG
1 GGCCTAGCCCATATCAATATTAATCTG
67050000 GGCCGTAGCCC
1 GGCC-TAGCCC
67050011 TATTACAAGT
Statistics
Matches: 55, Mismatches: 8, Indels: 16
0.70 0.10 0.20
Matches are distributed among these distances:
27 7 0.13
28 25 0.45
30 2 0.04
32 14 0.25
33 7 0.13
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.26
Consensus pattern (27 bp):
GGCCTAGCCCATATCAATATTAATCTG
Found at i:67051588 original size:25 final size:24
Alignment explanation
Indices: 67051533--67051588 Score: 60
Period size: 25 Copynumber: 2.3 Consensus size: 24
67051523 TTTCGGCTAG
67051533 GGAAGAAAAGAAAGGAGAAAAGAA
1 GGAAGAAAAGAAAGGAGAAAAGAA
* * *
67051557 -AATAGAAGAAGAGAGGAGAAGAGAA
1 GGA-AGAA-AAGAAAGGAGAAAAGAA
67051582 GGAAGAA
1 GGAAGAA
67051589 TTCGACACTT
Statistics
Matches: 25, Mismatches: 4, Indels: 5
0.74 0.12 0.15
Matches are distributed among these distances:
23 1 0.04
24 4 0.16
25 19 0.76
26 1 0.04
ACGTcount: A:0.62, C:0.00, G:0.36, T:0.02
Consensus pattern (24 bp):
GGAAGAAAAGAAAGGAGAAAAGAA
Found at i:67054554 original size:28 final size:27
Alignment explanation
Indices: 67054453--67054554 Score: 80
Period size: 28 Copynumber: 3.5 Consensus size: 27
67054443 TCAGAGTTAA
* *
67054453 CTGGGCCTTAGCCCATATCAATATTAAT
1 CTGGGCC-TAGCCCATATCAGTATCAAT
*
67054481 CTGGGCCATAGCCCCT-TACAGTATCAGAGTAT
1 CTGGGCC-TAGCCCATAT-CAGTATC--A--AT
*
67054513 ACTAGGCCTAGCCCATATCAGTATCAAT
1 -CTGGGCCTAGCCCATATCAGTATCAAT
67054541 CTGGGCCGTAGCCC
1 CTGGGCC-TAGCCC
67054555 TATTACAAGT
Statistics
Matches: 59, Mismatches: 7, Indels: 16
0.72 0.09 0.20
Matches are distributed among these distances:
27 7 0.12
28 27 0.46
30 2 0.03
32 16 0.27
33 7 0.12
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.25
Consensus pattern (27 bp):
CTGGGCCTAGCCCATATCAGTATCAAT
Found at i:67054581 original size:60 final size:59
Alignment explanation
Indices: 67054442--67054590 Score: 160
Period size: 60 Copynumber: 2.5 Consensus size: 59
67054432 CTATTCAGAA
* *
67054442 ATCAGAGT-TAACTGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAG
1 ATCAGAGTAT-ACTGGGCC-TAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAG
* * *
67054502 TATCAGAGTATACTAGGCCTAGCCCATATCAGTATCAATCTGGGCCGTAGCCCTATTACA-
1 -ATCAGAGTATACTGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCC-ATTACAG
* *
67054562 AGTC-GAGATATATTGGGCCTTGCCCATAT
1 A-TCAGAG-TATACTGGGCCTAGCCCATAT
67054591 TAACATAGTT
Statistics
Matches: 76, Mismatches: 8, Indels: 9
0.82 0.09 0.10
Matches are distributed among these distances:
59 4 0.05
60 51 0.67
61 20 0.26
62 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.28
Consensus pattern (59 bp):
ATCAGAGTATACTGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAG
Found at i:67062116 original size:26 final size:26
Alignment explanation
Indices: 67062080--67062189 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
67062070 TGATACAAAT
67062080 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
67062106 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
67062132 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
67062158 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
67062184 TGATAA
1 TGATAA
67062190 GAATTTCATG
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:67075567 original size:42 final size:41
Alignment explanation
Indices: 67075471--67075567 Score: 108
Period size: 43 Copynumber: 2.3 Consensus size: 41
67075461 ATGATTTATG
*
67075471 TGTAAGACCATGTCTGAGACATCGGCATCATATTTGATTTCA
1 TGTAAGACC-TGTCTGAGACATCGGCATCATATTTGATTACA
* *
67075513 TGTAGGACCCTGTCTTG-GACAGT-GGCATTGATATTTGATTACA
1 TGTAAGA-CCTGTC-TGAGACA-TCGGCA-TCATATTTGATTACA
67075556 TGTAAGACCTGT
1 TGTAAGACCTGT
67075568 AAGACCACGT
Statistics
Matches: 47, Mismatches: 4, Indels: 8
0.80 0.07 0.14
Matches are distributed among these distances:
42 23 0.49
43 24 0.51
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.34
Consensus pattern (41 bp):
TGTAAGACCTGTCTGAGACATCGGCATCATATTTGATTACA
Found at i:67086810 original size:90 final size:92
Alignment explanation
Indices: 67086710--67086917 Score: 262
Period size: 93 Copynumber: 2.3 Consensus size: 92
67086700 TGTCTGTGTT
* * *
67086710 GATGCATGTCCCAGACATGTCTTACACTAGCAC-ATCTC-ATAGCTGATGCATGTCCTGGACATG
1 GATGCATGTCCCAAACATGTCTTACACTAGCACTATCTCAAT-GCAGATGCATGTCCTAGACATG
* *
67086773 TCTTATAATGGC-TTACAT-CTCGAGGTC
65 TCTTATAATAGCATTACATAAT-GAGGTC
* * *
67086800 GATGCATGTCCCAAACATGTCTTACACTAGCTCTTGTCTCAATGCAGATGTATGTCCTAGACATG
1 GATGCATGTCCCAAACATGTCTTACACTAGCAC-TATCTCAATGCAGATGCATGTCCTAGACATG
* * *
67086865 TCTTATACTAGCATTTCATAATGTGGTC
65 TCTTATAATAGCATTACATAATGAGGTC
67086893 GATGCATGTCCCAAACATGTCTTAC
1 GATGCATGTCCCAAACATGTCTTAC
67086918 GCTGGCTCAC
Statistics
Matches: 102, Mismatches: 11, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
90 31 0.30
92 33 0.32
93 37 0.36
94 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (92 bp):
GATGCATGTCCCAAACATGTCTTACACTAGCACTATCTCAATGCAGATGCATGTCCTAGACATGT
CTTATAATAGCATTACATAATGAGGTC
Found at i:67086818 original size:46 final size:44
Alignment explanation
Indices: 67086709--67086830 Score: 129
Period size: 46 Copynumber: 2.7 Consensus size: 44
67086699 ATGTCTGTGT
* *
67086709 TGATGCATGTCCCAGACATGTCTTACACTAGCACATCTCATAGC
1 TGATGCATGTCCCAGACATGTCTTACAATAGCACATCTCAGAGC
** * * *
67086753 TGATGCATGTCCTGGACATGTCTTATAATGGCTTACATCTC-GAGG
1 TGATGCATGTCCCAGACATGTCTTACAATAGC--ACATCTCAGAGC
* *
67086798 TCGATGCATGTCCCAAACATGTCTTACACTAGC
1 T-GATGCATGTCCCAGACATGTCTTACAATAGC
67086831 TCTTGTCTCA
Statistics
Matches: 62, Mismatches: 13, Indels: 4
0.78 0.16 0.05
Matches are distributed among these distances:
44 27 0.44
45 3 0.05
46 32 0.52
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (44 bp):
TGATGCATGTCCCAGACATGTCTTACAATAGCACATCTCAGAGC
Found at i:67089769 original size:27 final size:26
Alignment explanation
Indices: 67089702--67089816 Score: 149
Period size: 27 Copynumber: 4.3 Consensus size: 26
67089692 TGGAGGAAGC
67089702 GTTCTGGTGGCTCTGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
*
67089729 ATTTCTGGTGGCTCTGCCACAAATATCT
1 -GTTCTGGTGGCTCTGCCAC-AATATCT
*
67089757 GTTCTTGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* **
67089783 GTATCTGGTGACTCTATCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
67089810 GTTCTGG
1 GTTCTGG
67089817 CAGCCATGCT
Statistics
Matches: 79, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
26 14 0.18
27 39 0.49
28 26 0.33
ACGTcount: A:0.19, C:0.24, G:0.20, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:67100386 original size:44 final size:41
Alignment explanation
Indices: 67100335--67100435 Score: 105
Period size: 41 Copynumber: 2.4 Consensus size: 41
67100325 TAATACCACA
*
67100335 TCTGGGACATTGGCATCG-ACTTATGATTTATGTGTAAGACCATG
1 TCTGGGACATTGGCATCGTA-TTA--ATTT-CGTGTAAGACCATG
* * *
67100379 TCTGGGACATCGGCATTGTATTAATTTCGTGTAAGACCCTG
1 TCTGGGACATTGGCATCGTATTAATTTCGTGTAAGACCATG
* *
67100420 TTTGGGACAATGGCAT
1 TCTGGGACATTGGCAT
67100436 TGATATTTGA
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
41 25 0.51
42 4 0.08
44 19 0.39
45 1 0.02
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.34
Consensus pattern (41 bp):
TCTGGGACATTGGCATCGTATTAATTTCGTGTAAGACCATG
Found at i:67104355 original size:55 final size:53
Alignment explanation
Indices: 67104289--67104425 Score: 150
Period size: 53 Copynumber: 2.5 Consensus size: 53
67104279 CAAGGAAATA
* * *
67104289 ATGTAAGACCATGTCAAGACATGGCATTGATAAACTACGATGAGGTAAA-GATCCC
1 ATGTAAGACCATGTCAAGACATGGCAATGAT-AACTACGA-AAGG-AAAGGATACC
* * * * *
67104344 ATGTAAGACCATGCCAAGGCATGGCAATGATGAGTTCGAAAGGAAAGGATACC
1 ATGTAAGACCATGTCAAGACATGGCAATGATAACTACGAAAGGAAAGGATACC
**
67104397 ACATAAGACCATGTCAAGACATGGCAATG
1 ATGTAAGACCATGTCAAGACATGGCAATG
67104426 GTAAGTTTAA
Statistics
Matches: 69, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
52 3 0.04
53 33 0.48
54 5 0.07
55 28 0.41
ACGTcount: A:0.39, C:0.18, G:0.24, T:0.19
Consensus pattern (53 bp):
ATGTAAGACCATGTCAAGACATGGCAATGATAACTACGAAAGGAAAGGATACC
Found at i:67111849 original size:53 final size:53
Alignment explanation
Indices: 67111668--67111873 Score: 223
Period size: 53 Copynumber: 3.8 Consensus size: 53
67111658 GTTAGGGTTT
* * * * *
67111668 AAGGATACCAAGTAAGACCATGTCAAGGCATGGCATTGGTAAGTTTAGAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCATAAGGC
* * * * * * *
67111721 TAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACGATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGT-AAGTTC-ATAAGGC
* * * * *
67111776 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCATAAGGC
* *
67111829 AAGGATACCACGTAAGACCATGTCAAGACATGGAAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
67111874 TAAAAAGGAA
Statistics
Matches: 122, Mismatches: 29, Indels: 4
0.79 0.19 0.03
Matches are distributed among these distances:
53 79 0.65
54 6 0.05
55 37 0.30
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.20
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCATAAGGC
Found at i:67113320 original size:48 final size:48
Alignment explanation
Indices: 67113238--67113414 Score: 221
Period size: 48 Copynumber: 3.7 Consensus size: 48
67113228 TCGATCCCAC
* * ** *
67113238 GTCCCAGACATGGGCTTACACGAAATCACATATCGATGCCAATGCCAT
1 GTCCCAGACATGGTCTTACATGGGATCTCATATCGATGCCAATGCCAT
* * * *
67113286 ATCCCAGATATTGTGC-TACATGGGATCTCATATCGATACCAATGCCAT
1 GTCCCAGACATGGT-CTTACATGGGATCTCATATCGATGCCAATGCCAT
* * *
67113334 GTCCCAGACATGGTCTTACATGGGATATCATATCGGTGCTAATGCCAT
1 GTCCCAGACATGGTCTTACATGGGATCTCATATCGATGCCAATGCCAT
*
67113382 GTCCAAGACATGGTCTTACATGGGATCTCATAT
1 GTCCCAGACATGGTCTTACATGGGATCTCATAT
67113415 AACCCTAATG
Statistics
Matches: 109, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
47 1 0.01
48 107 0.98
49 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (48 bp):
GTCCCAGACATGGTCTTACATGGGATCTCATATCGATGCCAATGCCAT
Found at i:67114834 original size:40 final size:40
Alignment explanation
Indices: 67114790--67114968 Score: 225
Period size: 40 Copynumber: 4.5 Consensus size: 40
67114780 CCAACCCAAT
* * ** *
67114790 TGCCTTCGGGATTTAGCCCGGATGTAACAACCAGCACAAA
1 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA
* * *
67114830 TGCCTTCAGGACTTAACCCAGAAATAGA-AACCAACACGAA
1 TGCCTTCGGGACTTAACCCGGAAATA-ACAACCAGCACGAA
*
67114870 TGCCTTCGGGACTTAACCCGAAAATAACAACCAGCACGAA
1 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA
* * * *
67114910 TGCCTTCGGGACTTAACTCGGAAATAACATCCCGCATGAA
1 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA
67114950 TGCCTTCGGGACTTAACCC
1 TGCCTTCGGGACTTAACCC
67114969 TGATATAATC
Statistics
Matches: 119, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 1 0.01
40 117 0.98
41 1 0.01
ACGTcount: A:0.33, C:0.29, G:0.19, T:0.19
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA
Found at i:67119248 original size:47 final size:45
Alignment explanation
Indices: 67119182--67119442 Score: 190
Period size: 47 Copynumber: 5.6 Consensus size: 45
67119172 TTTGAAAGCC
*
67119182 AGTGTAAGACCATGTCTGGGACATGGCATCGACATCCAGACGAGGGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGACATCCAGA-GAGAGCT
* * * * *
67119230 AGTGTAAGACATGTCTGGGACATGCATCAGCCATACTA-TGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GACAT-CCAGAGAGAGCT
* *
67119276 AGTGTAAGACCATGTCTGGGACATGGCATCGGCA--CAGAGATGAGTGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGACATCCAGAGA-GA--GCT
* * * * *
67119324 AATGTAAGACATGCCTGTGACATGCATCGACCTCGACAGAGATAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGACATC--CAGAGAGAGCT
* * * * * * *
67119371 AGTGTAAGACGTGTTTGGGACACGCATCGGC-T-AAGAGTTGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGACATCCAGAG-AGAGCT
67119415 AGTGTAAGACATGTCTGGGACATGCATC
1 AGTGTAAGACATGTCTGGGACATGCATC
67119443 AGCACGCGTA
Statistics
Matches: 169, Mismatches: 31, Indels: 30
0.73 0.13 0.13
Matches are distributed among these distances:
43 4 0.02
44 29 0.17
45 2 0.01
46 27 0.16
47 73 0.43
48 27 0.16
49 1 0.01
50 6 0.04
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACATCCAGAGAGAGCT
Found at i:67119346 original size:94 final size:94
Alignment explanation
Indices: 67119178--67119493 Score: 328
Period size: 94 Copynumber: 3.4 Consensus size: 94
67119168 GTGATTTGAA
* * * *
67119178 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATC-CAGACGAGGGCTAGTGTAAGACAT
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA-CAGAGATGAGTGCTAGTGTAAGACAT
67119242 GTCTGGGACATGCATCAG-CCATACTATGAT
65 GTCTGGGACATGCATCAGACC-TACTATGAT
* *
67119272 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGAGATGAGTGCCAATGTAAGACATG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGAGATGAGTGCTAGTGTAAGACATG
* * *
67119337 CCTGTGACATGCATC-GACCTCGAC-AGAGAT
66 TCTGGGACATGCATCAGACCT--ACTA-TGAT
* * * * *
67119367 AGCTAGTGTAAGA-CGTGTTTGGGACA-CGCATCGGCTA-AGAG-T-TGTGCTAGTGTAAGACAT
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-ACAGAGATGAGTGCTAGTGTAAGACAT
*
67119427 GTCTGGGACATGCATCAGCACGCGTA-TATGAG
65 GTCTGGGACATGCATCAG-AC-C-TACTATGAT
* *
67119459 AACCAGTGTAAGACCATGTCTAGGACATGGCATCG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
67119494 ATAATATATC
Statistics
Matches: 183, Mismatches: 26, Indels: 26
0.78 0.11 0.11
Matches are distributed among these distances:
91 29 0.16
92 15 0.08
93 29 0.16
94 92 0.50
95 18 0.10
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (94 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGAGATGAGTGCTAGTGTAAGACATG
TCTGGGACATGCATCAGACCTACTATGAT
Found at i:67123240 original size:47 final size:47
Alignment explanation
Indices: 67123186--67123427 Score: 290
Period size: 47 Copynumber: 5.1 Consensus size: 47
67123176 TTAGGATTTT
** *
67123186 ATGTGATGAATGTGAATGTGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
67123233 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
67123280 ATGTGATGAATGTGAGCACGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
67123327 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
** * * * *
67123374 ATGTGAAAAATGTATGAGAAATG--TATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATG--TGA-ACATGCATATATGTGATAAGGCCGAATGGCCA
67123422 ATGTGA
1 ATGTGA
67123428 AATATGTATG
Statistics
Matches: 173, Mismatches: 19, Indels: 5
0.88 0.10 0.03
Matches are distributed among these distances:
47 135 0.78
48 31 0.18
49 3 0.02
50 4 0.02
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:67123286 original size:22 final size:22
Alignment explanation
Indices: 67123215--67123286 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
67123205 GCATATATGA
67123215 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
67123237 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
67123262 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
67123284 GAT
1 GAT
67123287 GAATGTGAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:67123505 original size:98 final size:96
Alignment explanation
Indices: 67123350--67123533 Score: 298
Period size: 98 Copynumber: 1.9 Consensus size: 96
67123340 GAACATGCAT
*
67123350 ATATGTGGTAAAGCCGAATGGCTAATGTGAAAAATGTATGAGAAATGTATATGTGGTAAAGCCGA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAAAATATATGAGAAATGTATATGTGGTAAAGCCGA
67123415 ATGGCTAATGTGAAATATGTATGAGATATGC
66 ATGGCTAATGTGAAATATGTATGAGATATGC
* *
67123446 ATATGTGGTAAAGCTGAATGG-TCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGC
1 ATATGTGGTAAAGCCGAATGGCT-AATGTGAAA-A-ATATATGAGAAATGTATATGTGGTAAAGC
*
67123510 CGAATGGCTAGTGTGAAATATGTA
63 CGAATGGCTAATGTGAAATATGTA
67123534 GGCGATGTGC
Statistics
Matches: 81, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
95 1 0.01
96 29 0.36
97 1 0.01
98 50 0.62
ACGTcount: A:0.37, C:0.07, G:0.27, T:0.30
Consensus pattern (96 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAAAATATATGAGAAATGTATATGTGGTAAAGCCGA
ATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:67123549 original size:50 final size:48
Alignment explanation
Indices: 67123349--67123533 Score: 282
Period size: 48 Copynumber: 3.8 Consensus size: 48
67123339 TGAACATGCA
* *
67123349 TATATGTGGTAAAGCCGAATGGCTAATGTGAAAAATGTATGAGAAATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
67123397 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* * *
67123445 CATATGTGGTAAAGCTGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
*
67123495 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
67123534 GGCGATGTGC
Statistics
Matches: 124, Mismatches: 9, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
47 1 0.01
48 78 0.63
49 4 0.03
50 40 0.32
51 1 0.01
ACGTcount: A:0.37, C:0.06, G:0.26, T:0.30
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:67123787 original size:37 final size:37
Alignment explanation
Indices: 67123679--67123787 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
67123669 GGAAATATAT
*
67123679 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
67123716 TCTGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
67123753 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
67123788 CGTCTGAGCT
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:67130428 original size:48 final size:48
Alignment explanation
Indices: 67130340--67130539 Score: 258
Period size: 48 Copynumber: 4.2 Consensus size: 48
67130330 TCTCATATCG
* * * ** * *
67130340 ATGCCATGTCCCAGACATGGTATTGCATGAAATCACATATCGATGCCA
1 ATGCCATGTCCCAGGCATGGTCTTACATGGGATCTCATATAGATGCCA
* ** * *
67130388 ATGCCATATCCCAGGTGTGGTCTTACATGGGATCTTATATCGATGCCA
1 ATGCCATGTCCCAGGCATGGTCTTACATGGGATCTCATATAGATGCCA
* *
67130436 ATGCCATGTCCCAGACATGGTCTTACATGGGATCTCATATAGATTCCA
1 ATGCCATGTCCCAGGCATGGTCTTACATGGGATCTCATATAGATGCCA
67130484 ATGCCATGTCCC-GGACATGGTCTTACATGGGATCTCATATAGATGCCA
1 ATGCCATGTCCCAGG-CATGGTCTTACATGGGATCTCATATAGATGCCA
67130532 ATGCCATG
1 ATGCCATG
67130540 ACATTTGTAT
Statistics
Matches: 132, Mismatches: 19, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
47 1 0.01
48 131 0.99
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (48 bp):
ATGCCATGTCCCAGGCATGGTCTTACATGGGATCTCATATAGATGCCA
Found at i:67132357 original size:20 final size:20
Alignment explanation
Indices: 67132332--67132394 Score: 56
Period size: 23 Copynumber: 3.0 Consensus size: 20
67132322 TGTTTTTAGT
67132332 TTAATAAAAAATAATTATTA
1 TTAATAAAAAATAATTATTA
* *
67132352 TTAATATATAATTATATTTATTA
1 TTAATA-A-AA-AATAATTATTA
* *
67132375 -TAATATAAATTAATTATTA
1 TTAATAAAAAATAATTATTA
67132394 T
1 T
67132395 CAACTTTACA
Statistics
Matches: 33, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
19 8 0.24
20 8 0.24
21 1 0.03
22 7 0.21
23 9 0.27
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (20 bp):
TTAATAAAAAATAATTATTA
Found at i:67132364 original size:17 final size:15
Alignment explanation
Indices: 67132342--67132391 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 15
67132332 TTAATAAAAA
67132342 ATAATTATTATTAATAT
1 ATAATTA-TATTAAT-T
*
67132359 ATAATTATATTTATT
1 ATAATTATATTAATT
*
67132374 ATAATATAAATTAATT
1 ATAAT-TATATTAATT
67132390 AT
1 AT
67132392 TATCAACTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
15 6 0.21
16 16 0.55
17 7 0.24
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
ATAATTATATTAATT
Found at i:67133901 original size:28 final size:29
Alignment explanation
Indices: 67133869--67133983 Score: 128
Period size: 29 Copynumber: 4.0 Consensus size: 29
67133859 TACCTATATC
* *
67133869 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
*
67133897 TGGCCCATTAGGCCCAAATCACCTGT-ATA
1 TGGCCCATTAGGCCCAAATCACAT-TCATA
* *
67133926 TGGCCCATTAGGCCCAAACCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
* * *
67133955 TGGCACATTAGG-CCTAGTCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
67133983 T
1 T
67133984 TCATGCTCAC
Statistics
Matches: 74, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
28 28 0.38
29 45 0.61
30 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.27
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:67133968 original size:58 final size:57
Alignment explanation
Indices: 67133860--67133968 Score: 146
Period size: 58 Copynumber: 1.9 Consensus size: 57
67133850 AATTTCACAT
* * * *
67133860 ACCTATATCTGGCCCATTAAGCCCAATCATATTCATATGGCCCATTAGGCCCAAATC
1 ACCTATATATGGCCCATTAAGCCCAACCACATTCATATGGCACATTAGGCCCAAATC
* * *
67133917 ACCTGTATATGGCCCATTAGGCCCAAACCACATTTATATGGCACATTAGGCC
1 ACCTATATATGGCCCATTAAGCCC-AACCACATTCATATGGCACATTAGGCC
67133969 TAGTCACATT
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 21 0.48
58 23 0.52
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.26
Consensus pattern (57 bp):
ACCTATATATGGCCCATTAAGCCCAACCACATTCATATGGCACATTAGGCCCAAATC
Found at i:67135343 original size:16 final size:16
Alignment explanation
Indices: 67135319--67135350 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
67135309 AAGTTCAGGA
*
67135319 TTTCGGGATTTTTGGG
1 TTTCAGGATTTTTGGG
67135335 TTTCAGGATTTTTGGG
1 TTTCAGGATTTTTGGG
67135351 GCGTTACACT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.09, C:0.06, G:0.34, T:0.50
Consensus pattern (16 bp):
TTTCAGGATTTTTGGG
Found at i:67150119 original size:50 final size:52
Alignment explanation
Indices: 67150011--67150131 Score: 174
Period size: 50 Copynumber: 2.4 Consensus size: 52
67150001 ATGAACAAAT
* * * *
67150011 GAGTTACTTAATGCATGACTTAATTTAATGGTGCAAACTTTAACTAACATGG
1 GAGTTACATAATGCATGACATAATTTAATGATGCAAACTTTAACTAACATGA
* *
67150063 GAGTTACATAAAGCATGTCATAATTT-ATGATGCAAAC-TTAACTAACATGA
1 GAGTTACATAATGCATGACATAATTTAATGATGCAAACTTTAACTAACATGA
67150113 GAGTTACATAATGCATGAC
1 GAGTTACATAATGCATGAC
67150132 TTTATTAAAT
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
50 29 0.48
51 10 0.16
52 22 0.36
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.31
Consensus pattern (52 bp):
GAGTTACATAATGCATGACATAATTTAATGATGCAAACTTTAACTAACATGA
Found at i:67152452 original size:22 final size:22
Alignment explanation
Indices: 67152426--67152469 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
67152416 AACTATTAAC
*
67152426 ATAATGAATTTTAATTAATTTT
1 ATAATAAATTTTAATTAATTTT
*
67152448 ATAATAAATTTTGATTAATTTT
1 ATAATAAATTTTAATTAATTTT
67152470 GATCATTTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.55
Consensus pattern (22 bp):
ATAATAAATTTTAATTAATTTT
Found at i:67154491 original size:19 final size:18
Alignment explanation
Indices: 67154459--67154497 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 18
67154449 ACAAACATAT
67154459 CTCAACCAAATAAA-TAC
1 CTCAACCAAATAAACTAC
67154476 CTCATACCATAATAAACTAC
1 CTCA-ACCA-AATAAACTAC
67154496 CT
1 CT
67154498 TTAATGGACA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 4 0.21
18 4 0.21
19 6 0.32
20 5 0.26
ACGTcount: A:0.46, C:0.31, G:0.00, T:0.23
Consensus pattern (18 bp):
CTCAACCAAATAAACTAC
Found at i:67162361 original size:28 final size:27
Alignment explanation
Indices: 67162308--67162366 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 27
67162298 TAAAGGTCTT
* * *
67162308 TTAATTTGTTAAATTATTAGATATAAGG
1 TTAATTTGTTAAATTAATAAAGATAA-G
67162336 TTAATGTTG-TAAATTAATAAAGATAAG
1 TTAAT-TTGTTAAATTAATAAAGATAAG
67162363 TTAA
1 TTAA
67162367 AAATATTAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 5 0.19
28 19 0.70
29 3 0.11
ACGTcount: A:0.44, C:0.00, G:0.14, T:0.42
Consensus pattern (27 bp):
TTAATTTGTTAAATTAATAAAGATAAG
Found at i:67164490 original size:15 final size:16
Alignment explanation
Indices: 67164461--67164490 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
67164451 TAATTTTTAT
67164461 ATTGTTTTGTATATTG
1 ATTGTTTTGTATATTG
67164477 ATTGTTTT-TATATT
1 ATTGTTTTGTATATT
67164491 ATTCCATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.20, C:0.00, G:0.13, T:0.67
Consensus pattern (16 bp):
ATTGTTTTGTATATTG
Found at i:67164878 original size:15 final size:16
Alignment explanation
Indices: 67164849--67164878 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
67164839 TAATTTTTAT
67164849 ATTGTTTTGTATATTG
1 ATTGTTTTGTATATTG
67164865 ATTGTTTT-TATATT
1 ATTGTTTTGTATATT
67164879 ATTCCATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.20, C:0.00, G:0.13, T:0.67
Consensus pattern (16 bp):
ATTGTTTTGTATATTG
Found at i:67165425 original size:131 final size:131
Alignment explanation
Indices: 67165191--67165451 Score: 337
Period size: 131 Copynumber: 2.0 Consensus size: 131
67165181 TAATTATTTA
* * *
67165191 TTTAAAAATTCTTTAAAACAAAGGTAATATTCGATGTTTGGCAATTTGAGAATCGTGCCCTATAG
1 TTTAAAAACTCTTCAAAACAAAGGTAATATTCAATGTTTGGCAATTTGAGAATCGTGCCCTATAG
* * *
67165256 TGCTAGGCTGTGATTTTCTCGCTTGTTCAAAACAATCGAATATTCCTTTAGAATTTTACTCATGT
66 TGCTAGGCTGCGATTTTCTCGCTTGTTCAAAACAATCGAATATTCCTTTAAAATTTCACTCATGT
67165321 C
131 C
* * *
67165322 TTTAAAAACTCTTCAAAATGAAA-GTAATATTCAATGTTTGGCAATTTGGGGAATCGTGTCCTAT
1 TTTAAAAACTCTTCAAAA-CAAAGGTAATATTCAATGTTTGGCAATTT-GAGAATCGTGCCCTAT
* * * * * * * *
67165386 CGTGTTGGGTTGCGATTTTCT-GTTTGTTCAAAATAATCGAATGTTCTTTTAAAATTTCACTCAT
64 AGTGCTAGGCTGCGATTTTCTCGCTTGTTCAAAACAATCGAATATTCCTTTAAAATTTCACTCAT
67165450 GT
129 GT
67165452 TTTCTAAATT
Statistics
Matches: 111, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
131 78 0.70
132 33 0.30
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.39
Consensus pattern (131 bp):
TTTAAAAACTCTTCAAAACAAAGGTAATATTCAATGTTTGGCAATTTGAGAATCGTGCCCTATAG
TGCTAGGCTGCGATTTTCTCGCTTGTTCAAAACAATCGAATATTCCTTTAAAATTTCACTCATGT
C
Found at i:67166849 original size:20 final size:20
Alignment explanation
Indices: 67166824--67166875 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
67166814 GTATGGGGTT
67166824 TGCACTTCGGTGCCTCTTTA
1 TGCACTTCGGTGCCTCTTTA
67166844 TGCACTTCGGTGCCTCTTTA
1 TGCACTTCGGTGCCTCTTTA
*
67166864 TGCACTTTGGTG
1 TGCACTTCGGTG
67166876 TCCCTGTTCA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.10, C:0.27, G:0.23, T:0.40
Consensus pattern (20 bp):
TGCACTTCGGTGCCTCTTTA
Found at i:67169278 original size:18 final size:20
Alignment explanation
Indices: 67169242--67169288 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
67169232 ATTTGTAAGT
67169242 ATATATATGTGAATAATTTG
1 ATATATATGTGAATAATTTG
* *
67169262 ATAT-TATGTGATTATTTTG
1 ATATATATGTGAATAATTTG
67169281 ATGATATA
1 AT-ATATA
67169289 ACATGTTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49
Consensus pattern (20 bp):
ATATATATGTGAATAATTTG
Found at i:67172485 original size:40 final size:41
Alignment explanation
Indices: 67172396--67172545 Score: 203
Period size: 41 Copynumber: 3.7 Consensus size: 41
67172386 CGCTGACTCA
* *
67172396 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTGGCCC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
* * * * * *
67172437 GAAGGCCCTTCGAAACTAGGTTCGG-TTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
67172477 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
* *
67172518 AAAATCCCTTCGAGACCAAGCTCAGATT
1 AAAAGCCCTTCGAGACCAAGCTCGGATT
67172546 TAAACCCCGA
Statistics
Matches: 92, Mismatches: 16, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
40 32 0.35
41 60 0.65
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.21
Consensus pattern (41 bp):
AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
Found at i:67176347 original size:21 final size:21
Alignment explanation
Indices: 67176323--67176369 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 21
67176313 CAATTTACAA
67176323 TATGAGAT-AGTGGATTTTTAT
1 TATGA-ATCAGTGGATTTTTAT
*
67176344 TATGATTCAGTGGATTTTTAT
1 TATGAATCAGTGGATTTTTAT
67176365 TATGA
1 TATGA
67176370 TTCCCATTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 1 0.04
21 23 0.96
ACGTcount: A:0.28, C:0.02, G:0.21, T:0.49
Consensus pattern (21 bp):
TATGAATCAGTGGATTTTTAT
Found at i:67176370 original size:21 final size:21
Alignment explanation
Indices: 67176331--67176372 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
67176321 AATATGAGAT
67176331 AGTGGATTTTTATTATGATTC
1 AGTGGATTTTTATTATGATTC
67176352 AGTGGATTTTTATTATGATTC
1 AGTGGATTTTTATTATGATTC
67176373 CCATTAAAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.24, C:0.05, G:0.19, T:0.52
Consensus pattern (21 bp):
AGTGGATTTTTATTATGATTC
Found at i:67178555 original size:39 final size:38
Alignment explanation
Indices: 67178506--67178605 Score: 114
Period size: 39 Copynumber: 2.6 Consensus size: 38
67178496 CAAATATAAT
*
67178506 AATTAAAATTAACATAATTATAATAATGATT-GATCGAAA
1 AATTAAAATTAACATAATTATAATAA-AATTCGATC-AAA
* * *
67178545 AATTACAATTAAAATAATTATAATAAAATTCGATCATA
1 AATTAAAATTAACATAATTATAATAAAATTCGATCAAA
*
67178583 AATTATAATT-ACAATAATTATAA
1 AATTAAAATTAAC-ATAATTATAA
67178606 CAAGGATTTT
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
37 1 0.02
38 24 0.45
39 28 0.53
ACGTcount: A:0.55, C:0.06, G:0.04, T:0.35
Consensus pattern (38 bp):
AATTAAAATTAACATAATTATAATAAAATTCGATCAAA
Found at i:67189872 original size:26 final size:26
Alignment explanation
Indices: 67189843--67189899 Score: 114
Period size: 26 Copynumber: 2.2 Consensus size: 26
67189833 AGTCGAGTTT
67189843 TATAACCTAGCTCTGATACCACTAAA
1 TATAACCTAGCTCTGATACCACTAAA
67189869 TATAACCTAGCTCTGATACCACTAAA
1 TATAACCTAGCTCTGATACCACTAAA
67189895 TATAA
1 TATAA
67189900 TACCACTAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.40, C:0.25, G:0.07, T:0.28
Consensus pattern (26 bp):
TATAACCTAGCTCTGATACCACTAAA
Found at i:67189904 original size:15 final size:15
Alignment explanation
Indices: 67189884--67189914 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
67189874 CCTAGCTCTG
67189884 ATACCACTAAATATA
1 ATACCACTAAATATA
67189899 ATACCACTAAATATA
1 ATACCACTAAATATA
67189914 A
1 A
67189915 CCTAGCAATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.55, C:0.19, G:0.00, T:0.26
Consensus pattern (15 bp):
ATACCACTAAATATA
Found at i:67192014 original size:119 final size:119
Alignment explanation
Indices: 67191803--67192040 Score: 467
Period size: 119 Copynumber: 2.0 Consensus size: 119
67191793 AATTGAAAAA
67191803 GCCGAAAACAGGAGTAGGGAAAAGAGTAATGCCACAACTGTTACAATACCAAGTGGTGAAAAGAT
1 GCCGAAAACAGGAGTAGGGAAAAGAGTAATGCCACAACTGTTACAATACCAAGTGGTGAAAAGAT
67191868 GACAAGAGGAGAGAGGTATTCGGCAAAGAATCAAAAGAAGGGAAAGATGATAAG
66 GACAAGAGGAGAGAGGTATTCGGCAAAGAATCAAAAGAAGGGAAAGATGATAAG
67191922 GCCGAAAACAGGAGTAGGGAAAAGAGTAATGCCACAACTGTTACAATACCAAGTGGTGAAAAGAT
1 GCCGAAAACAGGAGTAGGGAAAAGAGTAATGCCACAACTGTTACAATACCAAGTGGTGAAAAGAT
*
67191987 GACAAGAGGAGAGGGGTATTCGGCAAAGAATCAAAAGAAGGGAAAGATGATAAG
66 GACAAGAGGAGAGAGGTATTCGGCAAAGAATCAAAAGAAGGGAAAGATGATAAG
67192041 AGAAGTTATT
Statistics
Matches: 118, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
119 118 1.00
ACGTcount: A:0.45, C:0.12, G:0.30, T:0.13
Consensus pattern (119 bp):
GCCGAAAACAGGAGTAGGGAAAAGAGTAATGCCACAACTGTTACAATACCAAGTGGTGAAAAGAT
GACAAGAGGAGAGAGGTATTCGGCAAAGAATCAAAAGAAGGGAAAGATGATAAG
Found at i:67199095 original size:40 final size:40
Alignment explanation
Indices: 67199036--67199180 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
67199026 CTCGCACAAG
* * * * *
67199036 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
*
67199076 GCCTTCGAGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
67199116 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
67199157 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
67199181 CATTCGAGTA
Statistics
Matches: 90, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 2 0.02
40 58 0.64
41 27 0.30
42 3 0.03
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:67200409 original size:38 final size:38
Alignment explanation
Indices: 67200367--67200442 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
67200357 CAAGAACTCC
67200367 TTCCTCCTTCCTTAGAATTTTCGACCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGACCAAAAGAAATGAA
*
67200405 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGACCAAAAGAAATGAA
67200443 AAAGGATGAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.33, C:0.24, G:0.12, T:0.32
Consensus pattern (38 bp):
TTCCTCCTTCCTTAGAATTTTCGACCAAAAGAAATGAA
Found at i:67216252 original size:58 final size:54
Alignment explanation
Indices: 67216181--67216314 Score: 155
Period size: 54 Copynumber: 2.4 Consensus size: 54
67216171 TAGGGTCTGA
* * * *
67216181 ATTTAGCCTGGACTGGTAATTCAGACCAA-GCTC-ATTAGAGTAATTGTCATTGCAGGGG
1 ATTTAGCCTGGACTGGTAATCCAGA-CAATACTCTA-T-GAGT--TTAT-ATTACAGGGG
*
67216239 ATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTACAGGGG
1 ATTTAGCCTGGACTGGTAATCCAGACAATACTCTATGAGTTTATATTACAGGGG
67216293 ATTTAGCCTGGACTGGTAATCC
1 ATTTAGCCTGGACTGGTAATCC
67216315 CACTATAAGG
Statistics
Matches: 69, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
54 31 0.45
55 3 0.04
57 7 0.10
58 27 0.39
59 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.31
Consensus pattern (54 bp):
ATTTAGCCTGGACTGGTAATCCAGACAATACTCTATGAGTTTATATTACAGGGG
Found at i:67217838 original size:40 final size:39
Alignment explanation
Indices: 67217764--67217988 Score: 281
Period size: 40 Copynumber: 5.6 Consensus size: 39
67217754 AACCCAAGTA
* * *
67217764 CCTTCGGGATTTAG-CCGAATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGC-ACTAGCACAAATG
*
67217803 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CACTAGCACAAATG
*
67217843 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGC-ACTA---GCACAAATG
*
67217886 CCTTCGGGACTTTGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CACTAGCACAAATG
* * * *
67217926 CCTTCGAGACTTAGCCCGGATATAGGAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATA-GCACTAGCACAAATG
67217966 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
67217989 CATCCGAATA
Statistics
Matches: 164, Mismatches: 14, Indels: 15
0.85 0.07 0.08
Matches are distributed among these distances:
39 13 0.08
40 112 0.68
41 2 0.01
43 36 0.22
44 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCCGGATATAGCACTAGCACAAATG
Found at i:67217884 original size:83 final size:80
Alignment explanation
Indices: 67217764--67217988 Score: 326
Period size: 83 Copynumber: 2.8 Consensus size: 80
67217754 AACCCAAGTA
* * * * *
67217764 CCTTCGGGATTTAG-CCGAATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
1 CCTTCGAGACTTAGCCCGGATATAGAAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
67217828 TCACTAGCACAAATG
66 TCACTAGCACAAATG
* * *
67217843 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGGGACTTTGCCCGGATA
1 CCTTCGAGACTTAGCCCGGATATAG-AA--ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA
67217908 TAGTCACTAGCACAAATG
63 TAGTCACTAGCACAAATG
* *
67217926 CCTTCGAGACTTAGCCCGGATATAGGAACTCGTACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CCTTCGAGACTTAGCCCGGATATAGAAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
67217989 CATCCGAATA
Statistics
Matches: 131, Mismatches: 11, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
79 13 0.10
80 42 0.32
81 1 0.01
82 1 0.01
83 74 0.56
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (80 bp):
CCTTCGAGACTTAGCCCGGATATAGAAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TCACTAGCACAAATG
Found at i:67219833 original size:46 final size:46
Alignment explanation
Indices: 67219766--67219970 Score: 313
Period size: 46 Copynumber: 4.5 Consensus size: 46
67219756 GGCTGTCACA
*
67219766 TGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATGTGAAATG
1 TGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATG
67219812 TGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATG
1 TGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATG
*
67219858 TGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATG
1 TGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATG
** * *
67219904 AATAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATG
1 TGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG-AAATG
** *
67219950 AATAAGACCATAGTTGAAAGA
1 TGTAAGACCATGGTTGAAAGA
67219971 CACTATGACA
Statistics
Matches: 151, Mismatches: 7, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
45 1 0.01
46 150 0.99
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.22
Consensus pattern (46 bp):
TGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATG
Found at i:67224848 original size:21 final size:21
Alignment explanation
Indices: 67224818--67224871 Score: 74
Period size: 21 Copynumber: 2.5 Consensus size: 21
67224808 ACTATTGTTG
67224818 AGAAGGAAGTTGTTGCT-ACAGA
1 AGAA-GAAGTTGTTGCTGA-AGA
67224840 AGAAGAAGTTGTTGCTGAAGA
1 AGAAGAAGTTGTTGCTGAAGA
*
67224861 AGAAAAAGTTG
1 AGAAGAAGTTG
67224872 CTAAAAATGA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
21 25 0.83
22 5 0.17
ACGTcount: A:0.41, C:0.06, G:0.31, T:0.22
Consensus pattern (21 bp):
AGAAGAAGTTGTTGCTGAAGA
Found at i:67237250 original size:51 final size:52
Alignment explanation
Indices: 67237174--67237280 Score: 146
Period size: 52 Copynumber: 2.1 Consensus size: 52
67237164 AGTTTATTAA
*
67237174 TGACAATTCAATAAAGCTGTCAA-TTTCAATCTCAAAAGATTACTCAATTCG
1 TGACAATTCAATAAAGCTGTCAATTTTCAAGCTCAAAAGATTACTCAATTCG
* * * *
67237225 TGACAATTCAA-ACAAGCTGTCAATTTTTAAGCTCAAAAGTTTAGTTAATTCG
1 TGACAATTCAATA-AAGCTGTCAATTTTCAAGCTCAAAAGATTACTCAATTCG
67237277 TGAC
1 TGAC
67237281 TATTTGGATT
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
50 1 0.02
51 21 0.43
52 27 0.55
ACGTcount: A:0.37, C:0.18, G:0.12, T:0.33
Consensus pattern (52 bp):
TGACAATTCAATAAAGCTGTCAATTTTCAAGCTCAAAAGATTACTCAATTCG
Found at i:67245130 original size:33 final size:33
Alignment explanation
Indices: 67245092--67245190 Score: 144
Period size: 33 Copynumber: 3.0 Consensus size: 33
67245082 GATTGAGTGG
*
67245092 GAGTGTTTGGTTGCTGGACAGGAGCTGGAATGT
1 GAGTGTTTTGTTGCTGGACAGGAGCTGGAATGT
* * *
67245125 GAGTGTTTTGCTGTTGGACAGGAGTTGGAATGT
1 GAGTGTTTTGTTGCTGGACAGGAGCTGGAATGT
* *
67245158 GGGTGTTTTGTTGCTGGACATGAGCTGGAATGT
1 GAGTGTTTTGTTGCTGGACAGGAGCTGGAATGT
67245191 CAAGAAGAAA
Statistics
Matches: 57, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 57 1.00
ACGTcount: A:0.17, C:0.08, G:0.40, T:0.34
Consensus pattern (33 bp):
GAGTGTTTTGTTGCTGGACAGGAGCTGGAATGT
Found at i:67251097 original size:21 final size:22
Alignment explanation
Indices: 67251072--67251122 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 22
67251062 AAGAAGATTA
67251072 CAAACAA-CCCAAAATAGTACT
1 CAAACAATCCCAAAATAGTACT
* **
67251093 CAAACAATGCTGAAATAGTACT
1 CAAACAATCCCAAAATAGTACT
67251115 CAAACAAT
1 CAAACAAT
67251123 ACTTAAATAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
21 7 0.27
22 19 0.73
ACGTcount: A:0.51, C:0.24, G:0.08, T:0.18
Consensus pattern (22 bp):
CAAACAATCCCAAAATAGTACT
Found at i:67251111 original size:22 final size:22
Alignment explanation
Indices: 67251083--67251133 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
67251073 AAACAACCCA
*
67251083 AAATAGTACTCAAACAATGCTG
1 AAATAGTACTCAAACAATACTG
*
67251105 AAATAGTACTCAAACAATACTT
1 AAATAGTACTCAAACAATACTG
67251127 AAATAGT
1 AAATAGT
67251134 GTTGAAAACA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.49, C:0.16, G:0.10, T:0.25
Consensus pattern (22 bp):
AAATAGTACTCAAACAATACTG
Found at i:67253518 original size:14 final size:14
Alignment explanation
Indices: 67253492--67253532 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
67253482 AGTGAAGGCT
*
67253492 GAAAAATAA-AAAA
1 GAAAAAAAAGAAAA
67253505 GAAAAAAAAGAAAA
1 GAAAAAAAAGAAAA
67253519 GAAAAAAACAGAAA
1 GAAAAAAA-AGAAA
67253533 TAAAGGTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 8 0.32
14 12 0.48
15 5 0.20
ACGTcount: A:0.83, C:0.02, G:0.12, T:0.02
Consensus pattern (14 bp):
GAAAAAAAAGAAAA
Found at i:67256484 original size:25 final size:25
Alignment explanation
Indices: 67256456--67256511 Score: 78
Period size: 25 Copynumber: 2.2 Consensus size: 25
67256446 TTACAAAGGA
**
67256456 AAAGTCCTAATTTAATT-TCTAATTT
1 AAAGTCCTAATAGAATTCT-TAATTT
67256481 AAAGTCCTAATAGAATTCTTAATTT
1 AAAGTCCTAATAGAATTCTTAATTT
67256506 AAAGTC
1 AAAGTC
67256512 TATAAAAAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 27 0.96
26 1 0.04
ACGTcount: A:0.39, C:0.12, G:0.07, T:0.41
Consensus pattern (25 bp):
AAAGTCCTAATAGAATTCTTAATTT
Done.