Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 197 of 295
Found at i:67261067 original size:13 final size:13
Alignment explanation
Indices: 67261049--67261112 Score: 55
Period size: 13 Copynumber: 5.1 Consensus size: 13
67261039 CTAATCTAGT
67261049 TCCTAATTTAAAG
1 TCCTAATTTAAAG
*
67261062 TCCTAA--TAGAAT
1 TCCTAATTTA-AAG
*
67261074 TCTTAATTTAAAG
1 TCCTAATTTAAAG
*
67261087 TCCTAA--TAGAAT
1 TCCTAATTTA-AAG
67261099 TCCTAATTTAAAG
1 TCCTAATTTAAAG
67261112 T
1 T
67261113 TTATAAAAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 12
0.68 0.11 0.21
Matches are distributed among these distances:
11 4 0.10
12 15 0.38
13 16 0.41
14 4 0.10
ACGTcount: A:0.39, C:0.14, G:0.08, T:0.39
Consensus pattern (13 bp):
TCCTAATTTAAAG
Found at i:67261067 original size:25 final size:25
Alignment explanation
Indices: 67261033--67261112 Score: 124
Period size: 25 Copynumber: 3.2 Consensus size: 25
67261023 TTACAAAGGG
** *
67261033 AAAGTCCTAATCTAGTTCCTAATTT
1 AAAGTCCTAATAGAATTCCTAATTT
*
67261058 AAAGTCCTAATAGAATTCTTAATTT
1 AAAGTCCTAATAGAATTCCTAATTT
67261083 AAAGTCCTAATAGAATTCCTAATTT
1 AAAGTCCTAATAGAATTCCTAATTT
67261108 AAAGT
1 AAAGT
67261113 TTATAAAAAA
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 50 1.00
ACGTcount: A:0.39, C:0.15, G:0.09, T:0.38
Consensus pattern (25 bp):
AAAGTCCTAATAGAATTCCTAATTT
Found at i:67262482 original size:17 final size:16
Alignment explanation
Indices: 67262462--67262501 Score: 55
Period size: 15 Copynumber: 2.5 Consensus size: 16
67262452 ATAAGGGGGA
67262462 TAAAAATATAATTTTAT
1 TAAAAATATAATTTT-T
*
67262479 TAAAAA-CTAATTTTT
1 TAAAAATATAATTTTT
67262494 TAAAAATA
1 TAAAAATA
67262502 AAAAATTTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
15 7 0.35
16 7 0.35
17 6 0.30
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (16 bp):
TAAAAATATAATTTTT
Found at i:67263269 original size:20 final size:20
Alignment explanation
Indices: 67263238--67263294 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 20
67263228 AATTAATTGA
*
67263238 TTTTTAAAAATTTTTAAAAT
1 TTTTTAATAATTTTTAAAAT
** *
67263258 ATTTTT-ATAATTTTTGTACT
1 -TTTTTAATAATTTTTAAAAT
67263278 TTTTTAATAATTTTTAA
1 TTTTTAATAATTTTTAA
67263295 TTCTAAAATA
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
19 5 0.17
20 19 0.66
21 5 0.17
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (20 bp):
TTTTTAATAATTTTTAAAAT
Found at i:67263293 original size:10 final size:10
Alignment explanation
Indices: 67263237--67263295 Score: 50
Period size: 10 Copynumber: 5.9 Consensus size: 10
67263227 CAATTAATTG
*
67263237 ATTTTTAAAA
1 ATTTTTAATA
67263247 ATTTTTAA-A
1 ATTTTTAATA
*
67263256 ATATTTTTATA
1 AT-TTTTAATA
*
67263267 ATTTTT-GTA
1 ATTTTTAATA
*
67263276 CTTTTTTAATA
1 -ATTTTTAATA
67263287 ATTTTTAAT
1 ATTTTTAAT
67263296 TCTAAAATAA
Statistics
Matches: 40, Mismatches: 5, Indels: 8
0.75 0.09 0.15
Matches are distributed among these distances:
9 5 0.12
10 30 0.75
11 5 0.12
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.61
Consensus pattern (10 bp):
ATTTTTAATA
Found at i:67263694 original size:16 final size:16
Alignment explanation
Indices: 67263655--67263694 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
67263645 CGTTTGGTTC
*
67263655 ATTGTAATGTAATAGA
1 ATTGTAATGGAATAGA
*
67263671 ATTATAATGGAATAGA
1 ATTGTAATGGAATAGA
*
67263687 GTTGTAAT
1 ATTGTAAT
67263695 CAGTAATTCA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.42, C:0.00, G:0.20, T:0.38
Consensus pattern (16 bp):
ATTGTAATGGAATAGA
Found at i:67270815 original size:15 final size:15
Alignment explanation
Indices: 67270795--67270824 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
67270785 TGGAAAGGAT
67270795 AGACGCCACAAGCAA
1 AGACGCCACAAGCAA
67270810 AGACGCCACAAGCAA
1 AGACGCCACAAGCAA
67270825 TGCTTAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.33, G:0.20, T:0.00
Consensus pattern (15 bp):
AGACGCCACAAGCAA
Found at i:67271401 original size:9 final size:9
Alignment explanation
Indices: 67271387--67271460 Score: 52
Period size: 9 Copynumber: 8.6 Consensus size: 9
67271377 GACACCTGCA
67271387 ATTAAACAC
1 ATTAAACAC
67271396 ATTAAA-AC
1 ATTAAACAC
*
67271404 ---AAACAT
1 ATTAAACAC
*
67271410 ATTAAACAA
1 ATTAAACAC
67271419 ATTTAAACAC
1 A-TTAAACAC
67271429 TTATTAAACAC
1 --ATTAAACAC
67271440 A--AAACAC
1 ATTAAACAC
67271447 ATTAAACAC
1 ATTAAACAC
*
67271456 TTTAA
1 ATTAA
67271461 CTTAAATAAA
Statistics
Matches: 52, Mismatches: 4, Indels: 18
0.70 0.05 0.24
Matches are distributed among these distances:
5 3 0.06
6 1 0.02
7 7 0.13
8 2 0.04
9 23 0.44
10 7 0.13
11 8 0.15
12 1 0.02
ACGTcount: A:0.57, C:0.18, G:0.00, T:0.26
Consensus pattern (9 bp):
ATTAAACAC
Found at i:67271413 original size:23 final size:21
Alignment explanation
Indices: 67271387--67271440 Score: 63
Period size: 23 Copynumber: 2.5 Consensus size: 21
67271377 GACACCTGCA
67271387 ATTAAACACATTAAAACAAACAT
1 ATTAAACACATTAAAAC--ACAT
* * *
67271410 ATTAAACAAATTTAAACACTT
1 ATTAAACACATTAAAACACAT
67271431 ATTAAACACA
1 ATTAAACACA
67271441 AAACACATTA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 12 0.44
23 15 0.56
ACGTcount: A:0.57, C:0.17, G:0.00, T:0.26
Consensus pattern (21 bp):
ATTAAACACATTAAAACACAT
Found at i:67272288 original size:28 final size:29
Alignment explanation
Indices: 67272257--67272339 Score: 75
Period size: 28 Copynumber: 3.0 Consensus size: 29
67272247 GCTGAATCTA
67272257 TTAATTAAAATG-T-TTAATGTGTCTTAGT
1 TTAATT-AAATGCTATTAATGTGTCTTAGT
**
67272285 TTAA-TACTTGCTATTAATGTGTCTTAGT
1 TTAATTAAATGCTATTAATGTGTCTTAGT
** * *
67272313 TTAA-TACTTGTTTTTAATGTGTCTTAG
1 TTAATTAAATGCTATTAATGTGTCTTAG
67272340 CTGCTGCCAA
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
26 3 0.06
27 2 0.04
28 44 0.90
ACGTcount: A:0.27, C:0.07, G:0.14, T:0.52
Consensus pattern (29 bp):
TTAATTAAATGCTATTAATGTGTCTTAGT
Found at i:67278672 original size:28 final size:28
Alignment explanation
Indices: 67278641--67278738 Score: 151
Period size: 28 Copynumber: 3.5 Consensus size: 28
67278631 ATTAAAGTGT
* *
67278641 TTAATATGTCTTCGTTTAATACATGTTA
1 TTAATGTGTCTTAGTTTAATACATGTTA
67278669 TTAATGTGTCTTAGTTTAATACATGTTA
1 TTAATGTGTCTTAGTTTAATACATGTTA
* * *
67278697 TTAATGTGTCTTAGTTTAGTACTTGTTT
1 TTAATGTGTCTTAGTTTAATACATGTTA
67278725 TTAATGTGTCTTAG
1 TTAATGTGTCTTAG
67278739 CTGCAGTCGA
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 65 1.00
ACGTcount: A:0.24, C:0.08, G:0.15, T:0.52
Consensus pattern (28 bp):
TTAATGTGTCTTAGTTTAATACATGTTA
Found at i:67278928 original size:21 final size:22
Alignment explanation
Indices: 67278883--67278929 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
67278873 GCCAAAAGTG
67278883 AGCTGCTGATCTCTCTTCTCCA
1 AGCTGCTGATCTCTCTTCTCCA
* *
67278905 AGCTGCTGTTTTCTCTTC-CCA
1 AGCTGCTGATCTCTCTTCTCCA
67278926 AGCT
1 AGCT
67278930 ATCTTTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 7 0.30
22 16 0.70
ACGTcount: A:0.13, C:0.34, G:0.15, T:0.38
Consensus pattern (22 bp):
AGCTGCTGATCTCTCTTCTCCA
Found at i:67285496 original size:11 final size:11
Alignment explanation
Indices: 67285482--67285506 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
67285472 TGTTTTTTTA
67285482 TCATTTTAAAT
1 TCATTTTAAAT
67285493 TCATTTTAAAT
1 TCATTTTAAAT
67285504 TCA
1 TCA
67285507 CTAAAAAAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.12, G:0.00, T:0.52
Consensus pattern (11 bp):
TCATTTTAAAT
Found at i:67289024 original size:49 final size:48
Alignment explanation
Indices: 67288971--67289104 Score: 162
Period size: 49 Copynumber: 2.8 Consensus size: 48
67288961 TCTAGAAAAG
*
67288971 TAAGATGGGTCACTAGTAGGGCATGTTAGTTGCTAACTAGATTGGTAGA
1 TAAGAT-GGTCACTAGTAGGGCATGTTAGTTGCTAACCAGATTGGTAGA
* * *
67289020 TAAGATGGTCCACTTGTAAGGCATGTTAGTTGCTAACCAGATTGGTGGA
1 TAAGATGGT-CACTAGTAGGGCATGTTAGTTGCTAACCAGATTGGTAGA
** * *
67289069 TAAGATAGACCACTGGTAGGGCATGTGAGTTG-TAAC
1 TAAGAT-GGTCACTAGTAGGGCATGTTAGTTGCTAAC
67289105 AACCCATTTT
Statistics
Matches: 74, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
48 7 0.09
49 66 0.89
50 1 0.01
ACGTcount: A:0.28, C:0.13, G:0.30, T:0.29
Consensus pattern (48 bp):
TAAGATGGTCACTAGTAGGGCATGTTAGTTGCTAACCAGATTGGTAGA
Found at i:67289244 original size:17 final size:17
Alignment explanation
Indices: 67289218--67289253 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
67289208 TTTAAAAAGG
67289218 TTTTTTATATAA-TGAT
1 TTTTTTATATAAGTGAT
67289234 TTTTGTTATATAAGTGAT
1 TTTT-TTATATAAGTGAT
67289252 TT
1 TT
67289254 ATTAAGTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 4 0.22
17 8 0.44
18 6 0.33
ACGTcount: A:0.28, C:0.00, G:0.11, T:0.61
Consensus pattern (17 bp):
TTTTTTATATAAGTGAT
Found at i:67292235 original size:47 final size:45
Alignment explanation
Indices: 67292167--67292293 Score: 152
Period size: 47 Copynumber: 2.8 Consensus size: 45
67292157 GGGTTATTGT
* **
67292167 GAGCTAGTGTAAGACATGTCTGGGACATG-TATCGGCCACATT-ATTA
1 GAGCTAGTGTAAGACATGTCTGGGACATGACATC-G--ACATTGACGA
67292213 GAGCTAGTGTAAGACCATGTCTGGGACATGACATCGACATTGAGACGA
1 GAGCTAGTGTAAGA-CATGTCTGGGACATGACATCGACATT--GACGA
67292261 GAGCTAGTGTAAGACATGTCTGGGACATG-CATC
1 GAGCTAGTGTAAGACATGTCTGGGACATGACATC
67292294 AGCCTCAAGA
Statistics
Matches: 73, Mismatches: 3, Indels: 10
0.85 0.03 0.12
Matches are distributed among these distances:
45 5 0.07
46 18 0.25
47 31 0.42
48 19 0.26
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.24
Consensus pattern (45 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGACATCGACATTGACGA
Found at i:67294312 original size:93 final size:93
Alignment explanation
Indices: 67294204--67294374 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
67294194 GCCCCTAAGT
* * *
67294204 GAACTCGGACTCAACTCAATGAGCTCGGGCATTCGCATCCATAAGTGAACTTGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
67294269 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
67294297 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
67294362 CGAGTTCGGATGC
66 CGAGTTCGGATGC
67294375 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:67294371 original size:46 final size:46
Alignment explanation
Indices: 67294199--67294371 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
67294189 AACCCGCCCC
* * *
67294199 TAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
67294245 TAAGTGAACTTGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
67294293 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
67294338 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
67294372 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 59 0.55
47 28 0.26
48 2 0.02
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:67294827 original size:30 final size:30
Alignment explanation
Indices: 67294793--67294852 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
67294783 ATTTAATACG
67294793 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
67294823 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
67294853 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:67300262 original size:56 final size:56
Alignment explanation
Indices: 67300202--67300394 Score: 314
Period size: 56 Copynumber: 3.4 Consensus size: 56
67300192 TCCCAAACAG
* * *
67300202 GGTCTTACTCGCACACATATATCGGAGTCACATATTGATGCCAACGCATAAAACGT
1 GGTCTTACTCGCACACATATATCGAAGTCACATATCGATGCCAACGTATAAAACGT
* * *
67300258 GGTCTTACTCGCACACATATATCGAAGTCATATATCGATGCCAATGTATAAAACAT
1 GGTCTTACTCGCACACATATATCGAAGTCACATATCGATGCCAACGTATAAAACGT
*
67300314 GGTCTTACTCGCACACATATATTGAAGTCACATATCGATGCCAACGTATAAAACGT
1 GGTCTTACTCGCACACATATATCGAAGTCACATATCGATGCCAACGTATAAAACGT
*
67300370 GGTCTTACTCGCATACATATATCGA
1 GGTCTTACTCGCACACATATATCGA
67300395 TGCCATGGTC
Statistics
Matches: 125, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
56 125 1.00
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.27
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCGAAGTCACATATCGATGCCAACGTATAAAACGT
Found at i:67300374 original size:112 final size:112
Alignment explanation
Indices: 67300177--67300394 Score: 346
Period size: 112 Copynumber: 1.9 Consensus size: 112
67300167 ATGTAATCAC
* * * * *
67300177 ATATCGATGCCACTGTCCCAAACAGGGTCTTACTCGCACACATATATCGGAGTCACATATTGATG
1 ATATCGATGCCAATGTACAAAACAGGGTCTTACTCGCACACATATATCGAAGTCACATATCGATG
67300242 CCAACGCATAAAACGTGGTCTTACTCGCACACATATATCGAAGTCAT
66 CCAACGCATAAAACGTGGTCTTACTCGCACACATATATCGAAGTCAT
* * *
67300289 ATATCGATGCCAATGTATAAAACATGGTCTTACTCGCACACATATATTGAAGTCACATATCGATG
1 ATATCGATGCCAATGTACAAAACAGGGTCTTACTCGCACACATATATCGAAGTCACATATCGATG
* *
67300354 CCAACGTATAAAACGTGGTCTTACTCGCATACATATATCGA
66 CCAACGCATAAAACGTGGTCTTACTCGCACACATATATCGA
67300395 TGCCATGGTC
Statistics
Matches: 96, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
112 96 1.00
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27
Consensus pattern (112 bp):
ATATCGATGCCAATGTACAAAACAGGGTCTTACTCGCACACATATATCGAAGTCACATATCGATG
CCAACGCATAAAACGTGGTCTTACTCGCACACATATATCGAAGTCAT
Found at i:67308101 original size:14 final size:14
Alignment explanation
Indices: 67308077--67308118 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
67308067 GATCTTCAAG
67308077 TATATTTTATTATAT
1 TATA-TTTATTATAT
*
67308092 TTTATTTATTATAT
1 TATATTTATTATAT
*
67308106 TATGTTTATTATA
1 TATATTTATTATA
67308119 ATTGGAGACT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
14 21 0.88
15 3 0.12
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (14 bp):
TATATTTATTATAT
Found at i:67320439 original size:13 final size:13
Alignment explanation
Indices: 67320421--67320447 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
67320411 GCTCGACAGG
67320421 GACACGCCCGTGT
1 GACACGCCCGTGT
67320434 GACACGCCCGTGT
1 GACACGCCCGTGT
67320447 G
1 G
67320448 CGATTATTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:67325016 original size:28 final size:27
Alignment explanation
Indices: 67324956--67325016 Score: 77
Period size: 29 Copynumber: 2.2 Consensus size: 27
67324946 AAAAATTTAG
*
67324956 CGTGCTCTCTGTTCTAAATACGCACTT
1 CGTGCTCTCTGTTCTAAATACACACTT
* *
67324983 CGGTGCTGTCCTGTTCTGAATACACACTT
1 C-GTGCTCT-CTGTTCTAAATACACACTT
67325012 CGTGC
1 CGTGC
67325017 ATGCTGTACT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
27 1 0.03
28 10 0.34
29 18 0.62
ACGTcount: A:0.16, C:0.30, G:0.20, T:0.34
Consensus pattern (27 bp):
CGTGCTCTCTGTTCTAAATACACACTT
Found at i:67325873 original size:28 final size:27
Alignment explanation
Indices: 67325813--67325873 Score: 77
Period size: 29 Copynumber: 2.2 Consensus size: 27
67325803 AAAAATTTAG
*
67325813 CGTGCTCTCTGTTCTAAATACGCACTT
1 CGTGCTCTCTGTTCTAAATACACACTT
* *
67325840 CGGTGCTGTCCTGTTCTGAATACACACTT
1 C-GTGCTCT-CTGTTCTAAATACACACTT
67325869 CGTGC
1 CGTGC
67325874 ATGCTGTACT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
27 1 0.03
28 10 0.34
29 18 0.62
ACGTcount: A:0.16, C:0.30, G:0.20, T:0.34
Consensus pattern (27 bp):
CGTGCTCTCTGTTCTAAATACACACTT
Found at i:67326054 original size:857 final size:857
Alignment explanation
Indices: 67324402--67326116 Score: 3430
Period size: 857 Copynumber: 2.0 Consensus size: 857
67324392 GAGAATGCAA
67324402 AATTTTCATGATTATTGTAATTCAAGTTACAATTGTTCTTTAAGTTGTGGAAAGATAAGGATTAA
1 AATTTTCATGATTATTGTAATTCAAGTTACAATTGTTCTTTAAGTTGTGGAAAGATAAGGATTAA
67324467 ATTGAAAAAAAAGTGTAAAATTGTAGTTAAATTGTGAAATATAATATGGATAAATAGAATGTGTA
66 ATTGAAAAAAAAGTGTAAAATTGTAGTTAAATTGTGAAATATAATATGGATAAATAGAATGTGTA
67324532 AGAAAGTGTGATGAAATAGTATATGAATGAAAAGTGAGAGTGAGATTGGATTACAAAAATAGTGA
131 AGAAAGTGTGATGAAATAGTATATGAATGAAAAGTGAGAGTGAGATTGGATTACAAAAATAGTGA
67324597 ATGATATAAATAGTTATTAAATTATATTTATTATGTGAATTATTTTAGTGAAATGAAAGAATTAT
196 ATGATATAAATAGTTATTAAATTATATTTATTATGTGAATTATTTTAGTGAAATGAAAGAATTAT
67324662 GAAAAAGAAAAAAAATGAATAAATTGCAAAATAAGCAAAAGTGACATGAGAAATATGGTAACATT
261 GAAAAAGAAAAAAAATGAATAAATTGCAAAATAAGCAAAAGTGACATGAGAAATATGGTAACATT
67324727 TAATAGTGAATTATGAATTTTTTATTAAGTAGTGAGATATTTTATATGCGTTAAAAAAGTTGGAA
326 TAATAGTGAATTATGAATTTTTTATTAAGTAGTGAGATATTTTATATGCGTTAAAAAAGTTGGAA
67324792 ATTCTATTTTTGAATTTTTACAATGTGGACTAAATTGAAATAAGTCCAAAGTATTTAAATTTTGT
391 ATTCTATTTTTGAATTTTTACAATGTGGACTAAATTGAAATAAGTCCAAAGTATTTAAATTTTGT
67324857 TTTGAAATAAGGAAATGAAATTGATTATGATATAATTTCCTGAGTAGACGAGATGAGAACTAATA
456 TTTGAAATAAGGAAATGAAATTGATTATGATATAATTTCCTGAGTAGACGAGATGAGAACTAATA
67324922 GGATATAGATGACATGCTATTAAGAAAAATTTAGCGTGCTCTCTGTTCTAAATACGCACTTCGGT
521 GGATATAGATGACATGCTATTAAGAAAAATTTAGCGTGCTCTCTGTTCTAAATACGCACTTCGGT
67324987 GCTGTCCTGTTCTGAATACACACTTCGTGCATGCTGTACTATTTTCGTATATTCTATGTGTTCTG
586 GCTGTCCTGTTCTGAATACACACTTCGTGCATGCTGTACTATTTTCGTATATTCTATGTGTTCTG
67325052 TTAAGTCTATGTTGGGCCTCTGTTGAATAATAAAAGATAATGATAAAATAAAAAGTTATGGTAAG
651 TTAAGTCTATGTTGGGCCTCTGTTGAATAATAAAAGATAATGATAAAATAAAAAGTTATGGTAAG
67325117 CAAGTTCTGATGAAAAGTTATTGCTACACAATAAGATGACAAGTAAAGGGTTCTAATAACAATTC
716 CAAGTTCTGATGAAAAGTTATTGCTACACAATAAGATGACAAGTAAAGGGTTCTAATAACAATTC
67325182 CTGTTAAACTGTGAAGTGATCATATAGTGAATTAGATTGGTAAAAGTATCCATGAAAAAATATAA
781 CTGTTAAACTGTGAAGTGATCATATAGTGAATTAGATTGGTAAAAGTATCCATGAAAAAATATAA
67325247 AAGTAGTGAATT
846 AAGTAGTGAATT
67325259 AATTTTCATGATTATTGTAATTCAAGTTACAATTGTTCTTTAAGTTGTGGAAAGATAAGGATTAA
1 AATTTTCATGATTATTGTAATTCAAGTTACAATTGTTCTTTAAGTTGTGGAAAGATAAGGATTAA
67325324 ATTGAAAAAAAAGTGTAAAATTGTAGTTAAATTGTGAAATATAATATGGATAAATAGAATGTGTA
66 ATTGAAAAAAAAGTGTAAAATTGTAGTTAAATTGTGAAATATAATATGGATAAATAGAATGTGTA
67325389 AGAAAGTGTGATGAAATAGTATATGAATGAAAAGTGAGAGTGAGATTGGATTACAAAAATAGTGA
131 AGAAAGTGTGATGAAATAGTATATGAATGAAAAGTGAGAGTGAGATTGGATTACAAAAATAGTGA
67325454 ATGATATAAATAGTTATTAAATTATATTTATTATGTGAATTATTTTAGTGAAATGAAAGAATTAT
196 ATGATATAAATAGTTATTAAATTATATTTATTATGTGAATTATTTTAGTGAAATGAAAGAATTAT
67325519 GAAAAAGAAAAAAAATGAATAAATTGCAAAATAAGCAAAAGTGACATGAGAAATATGGTAACATT
261 GAAAAAGAAAAAAAATGAATAAATTGCAAAATAAGCAAAAGTGACATGAGAAATATGGTAACATT
67325584 TAATAGTGAATTATGAATTTTTTATTAAGTAGTGAGATATTTTATATGCGTTAAAAAAGTTGGAA
326 TAATAGTGAATTATGAATTTTTTATTAAGTAGTGAGATATTTTATATGCGTTAAAAAAGTTGGAA
67325649 ATTCTATTTTTGAATTTTTACAATGTGGACTAAATTGAAATAAGTCCAAAGTATTTAAATTTTGT
391 ATTCTATTTTTGAATTTTTACAATGTGGACTAAATTGAAATAAGTCCAAAGTATTTAAATTTTGT
67325714 TTTGAAATAAGGAAATGAAATTGATTATGATATAATTTCCTGAGTAGACGAGATGAGAACTAATA
456 TTTGAAATAAGGAAATGAAATTGATTATGATATAATTTCCTGAGTAGACGAGATGAGAACTAATA
67325779 GGATATAGATGACATGCTATTAAGAAAAATTTAGCGTGCTCTCTGTTCTAAATACGCACTTCGGT
521 GGATATAGATGACATGCTATTAAGAAAAATTTAGCGTGCTCTCTGTTCTAAATACGCACTTCGGT
67325844 GCTGTCCTGTTCTGAATACACACTTCGTGCATGCTGTACTATTTTCGTATATTCTATGTGTTCTG
586 GCTGTCCTGTTCTGAATACACACTTCGTGCATGCTGTACTATTTTCGTATATTCTATGTGTTCTG
67325909 TTAAGTCTATGTTGGGCCTCTGTTGAATAATAAAAGATAATGATAAAATAAAAAGTTATGGTAAG
651 TTAAGTCTATGTTGGGCCTCTGTTGAATAATAAAAGATAATGATAAAATAAAAAGTTATGGTAAG
67325974 CAAGTTCTGATGAAAAGTTATTGCTACACAATAAGATGACAAGTAAAGGGTTCTAATAACAATTC
716 CAAGTTCTGATGAAAAGTTATTGCTACACAATAAGATGACAAGTAAAGGGTTCTAATAACAATTC
67326039 CTGTTAAACTGTGAAGTGATCATATAGTGAATTAGATTGGTAAAAGTATCCATGAAAAAATATAA
781 CTGTTAAACTGTGAAGTGATCATATAGTGAATTAGATTGGTAAAAGTATCCATGAAAAAATATAA
67326104 AAGTAGTGAATT
846 AAGTAGTGAATT
67326116 A
1 A
67326117 TGGTAATAAT
Statistics
Matches: 858, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
857 858 1.00
ACGTcount: A:0.40, C:0.07, G:0.18, T:0.34
Consensus pattern (857 bp):
AATTTTCATGATTATTGTAATTCAAGTTACAATTGTTCTTTAAGTTGTGGAAAGATAAGGATTAA
ATTGAAAAAAAAGTGTAAAATTGTAGTTAAATTGTGAAATATAATATGGATAAATAGAATGTGTA
AGAAAGTGTGATGAAATAGTATATGAATGAAAAGTGAGAGTGAGATTGGATTACAAAAATAGTGA
ATGATATAAATAGTTATTAAATTATATTTATTATGTGAATTATTTTAGTGAAATGAAAGAATTAT
GAAAAAGAAAAAAAATGAATAAATTGCAAAATAAGCAAAAGTGACATGAGAAATATGGTAACATT
TAATAGTGAATTATGAATTTTTTATTAAGTAGTGAGATATTTTATATGCGTTAAAAAAGTTGGAA
ATTCTATTTTTGAATTTTTACAATGTGGACTAAATTGAAATAAGTCCAAAGTATTTAAATTTTGT
TTTGAAATAAGGAAATGAAATTGATTATGATATAATTTCCTGAGTAGACGAGATGAGAACTAATA
GGATATAGATGACATGCTATTAAGAAAAATTTAGCGTGCTCTCTGTTCTAAATACGCACTTCGGT
GCTGTCCTGTTCTGAATACACACTTCGTGCATGCTGTACTATTTTCGTATATTCTATGTGTTCTG
TTAAGTCTATGTTGGGCCTCTGTTGAATAATAAAAGATAATGATAAAATAAAAAGTTATGGTAAG
CAAGTTCTGATGAAAAGTTATTGCTACACAATAAGATGACAAGTAAAGGGTTCTAATAACAATTC
CTGTTAAACTGTGAAGTGATCATATAGTGAATTAGATTGGTAAAAGTATCCATGAAAAAATATAA
AAGTAGTGAATT
Found at i:67331457 original size:27 final size:27
Alignment explanation
Indices: 67331426--67332066 Score: 307
Period size: 27 Copynumber: 23.7 Consensus size: 27
67331416 TTAGTTTACC
* *
67331426 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTACTAAAATACCCTCGATTTGTA
* * * * *
67331453 AAATTACCAAAGTACCCCCAATTTATA
1 AAATTACTAAAATACCCTCGATTTGTA
** *
67331480 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTACTAAAATACCCTCGATTTGTA
**
67331507 AAATTACCGAAATACCCTC-ATTTTGTA
1 AAATTACTAAAATACCCTCGA-TTTGTA
*
67331534 AAATTACTGAAATACCCTCGATTTTGTA
1 AAATTACTAAAATACCCTCGA-TTTGTA
**
67331562 AAATTACTAAAATACTCCT-G-TAAGATA
1 AAATTACTAAAATAC-CCTCGATTTG-TA
* * *** * **
67331589 GAATTACCATTTTACCCTCAATTTACA
1 AAATTACTAAAATACCCTCGATTTGTA
* * * **
67331616 AAATTACTGAAATACCCTTGGTTTACA
1 AAATTACTAAAATACCCTCGATTTGTA
* **
67331643 AAATTACCAAAATACCCTCGATTAATA
1 AAATTACTAAAATACCCTCGATTTGTA
* * *
67331670 AAATTACCAAAACACCC-CTAGTTTGTA
1 AAATTACTAAAATACCCTCGA-TTTGTA
*
67331697 AAATTACTAAAATACCC-CTGGTTTGTA
1 AAATTACTAAAATACCCTC-GATTTGTA
*
67331724 AAATTACTAAAATACCCCCTGATTTGTA
1 AAATTACTAAAATACCCTC-GATTTGTA
*
67331752 AAATTACTAAAATACCCTCGACTTGTAA
1 AAATTACTAAAATACCCTCGATTTGT-A
* * *
67331780 AAATTACCAAAGTACCCTCGATTTATA
1 AAATTACTAAAATACCCTCGATTTGTA
* * **** **
67331807 GAATTATTGTTTTACCCTCGATTTACA
1 AAATTACTAAAATACCCTCGATTTGTA
* *** * **
67331834 GAATTACTATTTTACCCTTGATTTACA
1 AAATTACTAAAATACCCTCGATTTGTA
***** *
67331861 AAATTACCGTTTTACCCTCAATTATG--
1 AAATTACTAAAATACCCTCGATT-TGTA
* * * **
67331887 AAATCACTGAAATACCC-CTATAGGGTA
1 AAATTACTAAAATACCCTCGAT-TTGTA
** * * *
67331914 GGATTACCAAAACACCC-CTAGTTTGTA
1 AAATTACTAAAATACCCTCGA-TTTGTA
* * *
67331941 AAATTACCAAAATACCACT-GGTTTGTG
1 AAATTACTAAAATACC-CTCGATTTGTA
** *
67331968 AAATTACCGAAATACCCTCAATTTGTA
1 AAATTACTAAAATACCCTCGATTTGTA
* **
67331995 AAATTACCAAAATACCC-CTGATTTACA
1 AAATTACTAAAATACCCTC-GATTTGTA
*
67332022 AAATTAC-AGAAATACCCTTGATTTGTA
1 AAATTACTA-AAATACCCTCGATTTGTA
* * * *
67332049 GATTTACCAAAACACCCT
1 AAATTACTAAAATACCCT
67332067 TGTAGGATGA
Statistics
Matches: 480, Mismatches: 112, Indels: 44
0.75 0.18 0.07
Matches are distributed among these distances:
25 4 0.01
26 24 0.05
27 371 0.77
28 78 0.16
29 3 0.01
ACGTcount: A:0.38, C:0.22, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACTAAAATACCCTCGATTTGTA
Found at i:67331752 original size:190 final size:190
Alignment explanation
Indices: 67331420--67331766 Score: 468
Period size: 190 Copynumber: 1.8 Consensus size: 190
67331410 AATACTTTAG
* ** * *
67331420 TTTACCAAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCCAATTTATAAAATT
1 TTTACAAAATTACTGAAATACCCTCGACTTACAAAATTACCAAAATACCCCCAATTAATAAAATT
* * * * * *
67331485 ACCCAAATATCCTCGATTTGTAAAATTACCGAAATACCCTCATTTTGTAAAATTACTGAAATACC
66 ACCAAAACACCCTAGATTTGTAAAATTACCAAAATACCCTCATTTTGTAAAATTACTAAAATACC
*
67331550 CTCGATTTTGTAAAATTACTAAAATACTCCTGTAAGATAGAATTACCATTTTACCCTCAA
131 CCCGATTTTGTAAAATTACTAAAATACTCCTGTAAGATAGAATTACCATTTTACCCTCAA
* ** * *
67331610 TTTACAAAATTACTGAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGATTAATAAAATT
1 TTTACAAAATTACTGAAATACCCTCGACTTACAAAATTACCAAAATACCCCCAATTAATAAAATT
*
67331675 ACCAAAACACCCCTAG-TTTGTAAAATTACTAAAATACCC-C-TGGTTTGTAAAATTACTAAAAT
66 ACCAAAACA-CCCTAGATTTGTAAAATTACCAAAATACCCTCAT--TTTGTAAAATTACTAAAAT
67331737 ACCCCCTGA-TTTGTAAAATTACTAAAATAC
128 ACCCCC-GATTTTGTAAAATTACTAAAATAC
67331767 CCTCGACTTG
Statistics
Matches: 135, Mismatches: 18, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
188 1 0.01
189 1 0.01
190 127 0.94
191 6 0.04
ACGTcount: A:0.40, C:0.21, G:0.07, T:0.31
Consensus pattern (190 bp):
TTTACAAAATTACTGAAATACCCTCGACTTACAAAATTACCAAAATACCCCCAATTAATAAAATT
ACCAAAACACCCTAGATTTGTAAAATTACCAAAATACCCTCATTTTGTAAAATTACTAAAATACC
CCCGATTTTGTAAAATTACTAAAATACTCCTGTAAGATAGAATTACCATTTTACCCTCAA
Found at i:67333001 original size:26 final size:26
Alignment explanation
Indices: 67332972--67333239 Score: 319
Period size: 26 Copynumber: 10.8 Consensus size: 26
67332962 GAGGAAGTGC
*
67332972 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATCG
*
67332998 AAAAGGACTTATGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
*
67333024 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATCG
* *
67333050 AAAAGCGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
* *
67333076 AAAAGGG--TAT----AAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATCG
* *
67333096 AAAAAGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
* *
67333122 AAAAGGGC--AT----AAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATCG
* *
67333142 AAAAAGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
67333168 AAAAGGGCTTATGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
67333194 AAAAGGGCTTATGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
*
67333220 AAAAGGGCTT-TGCCCTAGTT
1 AAAAGGGCTTATGCCCCAGTT
67333240 ATTAAAGAGG
Statistics
Matches: 204, Mismatches: 26, Indels: 25
0.80 0.10 0.10
Matches are distributed among these distances:
20 27 0.13
22 5 0.02
24 5 0.02
25 9 0.04
26 158 0.77
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATCG
Found at i:67333108 original size:46 final size:48
Alignment explanation
Indices: 67332989--67333228 Score: 294
Period size: 46 Copynumber: 4.9 Consensus size: 48
67332979 CTTATGCCCC
* *
67332989 AGTTTATTG-AAAAGGACTTATGCCCCAGTTTATCGAAAAGGGCTTATGCCCC
1 AGTTTATTGAAAAAGG-CTTATGCCCCAGTTTACCGAAAAGGGC-TAT---CA
67333041 AGTTTATTG-AAAAGCGCTTATGCCCCAGTTTACCGAAAAGGG-TAT-A
1 AGTTTATTGAAAAAG-GCTTATGCCCCAGTTTACCGAAAAGGGCTATCA
67333087 AGTTTATTGAAAAAGGCTTATGCCCCAGTTTACCGAAAAGGGC-AT-A
1 AGTTTATTGAAAAAGGCTTATGCCCCAGTTTACCGAAAAGGGCTATCA
*
67333133 AGTTTATTGAAAAAGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCC
1 AGTTTATTGAAAAAGGCTTATGCCCCAGTTTACCGAAAAGGGC-TAT---CA
* * *
67333185 AGTTTATCGAAAAGGGCTTATGCCCCAGTTTATCGAAAAGGGCT
1 AGTTTATTGAAAAAGGCTTATGCCCCAGTTTACCGAAAAGGGCT
67333229 TTGCCCTAGT
Statistics
Matches: 173, Mismatches: 6, Indels: 19
0.87 0.03 0.10
Matches are distributed among these distances:
46 82 0.47
47 5 0.03
48 2 0.01
50 3 0.02
51 1 0.01
52 79 0.46
53 1 0.01
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.28
Consensus pattern (48 bp):
AGTTTATTGAAAAAGGCTTATGCCCCAGTTTACCGAAAAGGGCTATCA
Found at i:67333443 original size:42 final size:42
Alignment explanation
Indices: 67333384--67333471 Score: 140
Period size: 42 Copynumber: 2.1 Consensus size: 42
67333374 TAGTCTCCCC
* ** *
67333384 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
67333426 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
67333468 AAAT
1 AAAT
67333472 AGGCCTAAGG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.31, C:0.14, G:0.19, T:0.36
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:67333576 original size:31 final size:31
Alignment explanation
Indices: 67333499--67333577 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
67333489 CGTTTACAGT
* *
67333499 AAAGGCTTCAGCCCAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
67333530 AAAGGCTTCGACCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
67333561 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
67333578 AACCGTTAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:67336913 original size:46 final size:45
Alignment explanation
Indices: 67336861--67337180 Score: 358
Period size: 46 Copynumber: 7.0 Consensus size: 45
67336851 GCTCTCTGAA
* *
67336861 ATGAAATATGTAAGACCATGGTTGAAAGATACCATGGCAACATCAT
1 ATGAAATA-GTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
67336907 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAAT-AGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
67336953 ATGAAA-AGAATAAGACCATGGGTGAAAGATACCATGGCAACATGAC
1 ATGAAATAG--TAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * * * *
67336999 GGGAAATGAATAAGACCATGGTTGAAAGATACCATGACAGCGTGAC
1 ATGAAAT-AGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
67337045 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAAT-AGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * *
67337091 ATGAAA-AGAATAAGACCATGGCTGAAAGATACCATGGTAACATGAT
1 ATGAAATAG--TAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * *
67337137 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAAT-AGTAAGACCATGGTTGAAAGATACCATGGCAACATG
67337181 TCAAAGATAA
Statistics
Matches: 235, Mismatches: 29, Indels: 20
0.83 0.10 0.07
Matches are distributed among these distances:
44 2 0.01
45 1 0.00
46 229 0.97
48 3 0.01
ACGTcount: A:0.42, C:0.15, G:0.23, T:0.20
Consensus pattern (45 bp):
ATGAAATAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:67336981 original size:92 final size:92
Alignment explanation
Indices: 67336871--67337180 Score: 424
Period size: 92 Copynumber: 3.4 Consensus size: 92
67336861 ATGAAATATG
* * **
67336871 TAAGACCATGGTTGAAAGATACCATGGCAACATCATATGAAATGTGTAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAATAAGACCATGGTTGAAAGA
67336936 TACCATGGCAACGTGACATGAAAAGAA
66 TACCATGGCAACGTGACATGAAAAGAA
* **
67336963 TAAGACCATGGGTGAAAGATACCATGGCAACATGACGGGAAATGAATAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAATAAGACCATGGTTGAAAGA
* * *
67337028 TACCATGACAGCGTGACATGAAATGAA
66 TACCATGGCAACGTGACATGAAAAGAA
* *
67337055 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAAGAATAAGACCATGGCTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAATAAGACCATGGTTGAAAGA
* * * *
67337120 TACCATGGTAACATGATA-GAAAATGAG
66 TACCATGGCAACGTGACATGAAAA-GAA
* * * *
67337147 TAAGACCATAGTTGAAAGACACTATGGCATCATG
1 TAAGACCATGGTTGAAAGATACCATGGCAACATG
67337181 TCAAAGATAA
Statistics
Matches: 191, Mismatches: 26, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
91 4 0.02
92 187 0.98
ACGTcount: A:0.42, C:0.15, G:0.24, T:0.19
Consensus pattern (92 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAATAAGACCATGGTTGAAAGA
TACCATGGCAACGTGACATGAAAAGAA
Found at i:67337111 original size:138 final size:138
Alignment explanation
Indices: 67336871--67337165 Score: 455
Period size: 138 Copynumber: 2.1 Consensus size: 138
67336861 ATGAAATATG
* * **
67336871 TAAGACCATGGTTGAAAGATACCATGGCAACATCATATGAAATGTGTAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGACAACATCACATGAAATGAATAAGACCATGGTTGAAAGA
* * *
67336936 TACCATGGCAACGTGACATGAAAAGAATAAGACCATGGGTGAAAGATACCATGGCAACATGACGG
66 TACCATGGCAACATGACATGAAAAGAATAAGACCATGGCTGAAAGATACCATGGCAACATGACAG
*
67337001 GAAATGAA
131 AAAATGAA
* * *
67337009 TAAGACCATGGTTGAAAGATACCATGACAGCGTGACATGAAATGAATAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGACAACATCACATGAAATGAATAAGACCATGGTTGAAAGA
* *
67337074 TACCATGGCAACATGACATGAAAAGAATAAGACCATGGCTGAAAGATACCATGGTAACATGATAG
66 TACCATGGCAACATGACATGAAAAGAATAAGACCATGGCTGAAAGATACCATGGCAACATGACAG
*
67337139 AAAATGAG
131 AAAATGAA
*
67337147 TAAGACCATAGTTGAAAGA
1 TAAGACCATGGTTGAAAGA
67337166 CACTATGGCA
Statistics
Matches: 142, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
138 142 1.00
ACGTcount: A:0.43, C:0.15, G:0.24, T:0.19
Consensus pattern (138 bp):
TAAGACCATGGTTGAAAGATACCATGACAACATCACATGAAATGAATAAGACCATGGTTGAAAGA
TACCATGGCAACATGACATGAAAAGAATAAGACCATGGCTGAAAGATACCATGGCAACATGACAG
AAAATGAA
Found at i:67343445 original size:53 final size:55
Alignment explanation
Indices: 67343376--67343516 Score: 151
Period size: 53 Copynumber: 2.6 Consensus size: 55
67343366 TTCCTTTTTA
* * * *
67343376 AACTTACCATTTCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCGTTAT-G-
1 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATCGT
* * * *
67343429 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATCGT
1 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATCGT
** ** *
67343484 AGTTTGTCAATGCCATGTCTTGACATGGTCTTA
1 AACTTACCATTGCCATGTCTTGACATGGTCTTA
67343517 ACTGATTTCC
Statistics
Matches: 70, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
53 44 0.63
54 1 0.01
55 25 0.36
ACGTcount: A:0.19, C:0.23, G:0.20, T:0.38
Consensus pattern (55 bp):
AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATCGT
Found at i:67348683 original size:15 final size:16
Alignment explanation
Indices: 67348654--67348692 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
67348644 TGACTGGCCT
*
67348654 AAAAAGGAAAGAAGAA
1 AAAAAAGAAAGAAGAA
67348670 AAAAAAGAAA-AAGAA
1 AAAAAAGAAAGAAGAA
67348685 AAATAAAG
1 AAA-AAAG
67348693 GTCTTAAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.79, C:0.00, G:0.18, T:0.03
Consensus pattern (16 bp):
AAAAAAGAAAGAAGAA
Found at i:67349125 original size:24 final size:24
Alignment explanation
Indices: 67349093--67349151 Score: 109
Period size: 24 Copynumber: 2.5 Consensus size: 24
67349083 TTTGGCCAAT
*
67349093 GTTTATAATGGCATGTATAGGATG
1 GTTTATAATGGCATGTATAAGATG
67349117 GTTTATAATGGCATGTATAAGATG
1 GTTTATAATGGCATGTATAAGATG
67349141 GTTTATAATGG
1 GTTTATAATGG
67349152 TGTTTTTTAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.31, C:0.03, G:0.27, T:0.39
Consensus pattern (24 bp):
GTTTATAATGGCATGTATAAGATG
Found at i:67353010 original size:275 final size:275
Alignment explanation
Indices: 67352512--67353062 Score: 1093
Period size: 275 Copynumber: 2.0 Consensus size: 275
67352502 AAAACTACTT
67352512 TCAGAACCAGGTACAAACATTATGAATTTCTTATTATGCCATTTGGTTTGACCAATGCACCTGTT
1 TCAGAACCAGGTACAAACATTATGAATTTCTTATTATGCCATTTGGTTTGACCAATGCACCTGTT
67352577 GTGCTTATGGACTTGATGAACAAAATATTCATACCATACTTAGACAAAGTTTTTATTGTGTTCAT
66 GTGCTTATGGACTTGATGAACAAAATATTCATACCATACTTAGACAAAGTTTTTATTGTGTTCAT
67352642 TGATGATATTCTTATTTATTCCCAAGATGAGACAGAGCATGCCTAACATTTGAGAATCACTTTGC
131 TGATGATATTCTTATTTATTCCCAAGATGAGACAGAGCATGCCTAACATTTGAGAATCACTTTGC
*
67352707 AAAATTTACGTGAAAAACATTGTTTGGTAAGTTTAGCAAATGTGAGTTCTGGCTCCACGAAGTTG
196 AAAATTTACGTGAAAAACATTATTTGGTAAGTTTAGCAAATGTGAGTTCTGGCTCCACGAAGTTG
67352772 GATTTTTGGGACATG
261 GATTTTTGGGACATG
67352787 TCAGAACCAGGTACAAACATTATGAATTTCTTATTATGCCATTTGGTTTGACCAATGCACCTGTT
1 TCAGAACCAGGTACAAACATTATGAATTTCTTATTATGCCATTTGGTTTGACCAATGCACCTGTT
67352852 GTGCTTATGGACTTGATGAACAAAATATTCATACCATACTTAGACAAAGTTTTTATTGTGTTCAT
66 GTGCTTATGGACTTGATGAACAAAATATTCATACCATACTTAGACAAAGTTTTTATTGTGTTCAT
67352917 TGATGATATTCTTATTTATTCCCAAGATGAGACAGAGCATGCCTAACATTTGAGAATCACTTTGC
131 TGATGATATTCTTATTTATTCCCAAGATGAGACAGAGCATGCCTAACATTTGAGAATCACTTTGC
67352982 AAAATTTACGTGAAAAACATTATTTGGTAAGTTTAGCAAATGTGAGTTCTGGCTCCACGAAGTTG
196 AAAATTTACGTGAAAAACATTATTTGGTAAGTTTAGCAAATGTGAGTTCTGGCTCCACGAAGTTG
67353047 GATTTTTGGGACATG
261 GATTTTTGGGACATG
67353062 T
1 T
67353063 GGTATTGGCA
Statistics
Matches: 275, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
275 275 1.00
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35
Consensus pattern (275 bp):
TCAGAACCAGGTACAAACATTATGAATTTCTTATTATGCCATTTGGTTTGACCAATGCACCTGTT
GTGCTTATGGACTTGATGAACAAAATATTCATACCATACTTAGACAAAGTTTTTATTGTGTTCAT
TGATGATATTCTTATTTATTCCCAAGATGAGACAGAGCATGCCTAACATTTGAGAATCACTTTGC
AAAATTTACGTGAAAAACATTATTTGGTAAGTTTAGCAAATGTGAGTTCTGGCTCCACGAAGTTG
GATTTTTGGGACATG
Found at i:67360238 original size:8 final size:8
Alignment explanation
Indices: 67360225--67360249 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
67360215 TTTAATAAGA
67360225 TATTTTAT
1 TATTTTAT
67360233 TATTTTAT
1 TATTTTAT
67360241 TATTTTAT
1 TATTTTAT
67360249 T
1 T
67360250 TAGTCTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:67371191 original size:16 final size:16
Alignment explanation
Indices: 67371167--67371199 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
67371157 CCCATTAGGT
67371167 GTAACTGGATTTTTAA
1 GTAACTGGATTTTTAA
*
67371183 GTAATTGGATTTTTAA
1 GTAACTGGATTTTTAA
67371199 G
1 G
67371200 AGGAAATGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.30, C:0.03, G:0.21, T:0.45
Consensus pattern (16 bp):
GTAACTGGATTTTTAA
Found at i:67374226 original size:17 final size:17
Alignment explanation
Indices: 67374206--67374241 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
67374196 TTTTGAATAG
67374206 GTAATTTTGTCGAATTA
1 GTAATTTTGTCGAATTA
67374223 GTAATTTTGTCGAATTA
1 GTAATTTTGTCGAATTA
67374240 GT
1 GT
67374242 GATTATTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.28, C:0.06, G:0.19, T:0.47
Consensus pattern (17 bp):
GTAATTTTGTCGAATTA
Found at i:67384520 original size:29 final size:29
Alignment explanation
Indices: 67384452--67384532 Score: 74
Period size: 31 Copynumber: 2.7 Consensus size: 29
67384442 AAAAACAAAA
* * *
67384452 CTATACATCAACTATGATTTAATGTGTAAT
1 CTATACATAAACTTTGATTT-ATGTGCAAT
*
67384482 CATATGCATAAACTTTGATTT-TGTGCAATT
1 C-TATACATAAACTTTGATTTATGTGCAA-T
*
67384512 CTATACATAAAATTTTGATTT
1 CTATACAT-AAACTTTGATTT
67384533 GATCTAATTT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
29 12 0.29
30 14 0.33
31 16 0.38
ACGTcount: A:0.35, C:0.12, G:0.10, T:0.43
Consensus pattern (29 bp):
CTATACATAAACTTTGATTTATGTGCAAT
Found at i:67384957 original size:11 final size:11
Alignment explanation
Indices: 67384928--67384957 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
67384918 GATACTCTAG
*
67384928 TAATTAAGTTC
1 TAATTAATTTC
67384939 TAATTAATTTC
1 TAATTAATTTC
67384950 TAATTAAT
1 TAATTAAT
67384958 GATGGGCTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.40, C:0.07, G:0.03, T:0.50
Consensus pattern (11 bp):
TAATTAATTTC
Found at i:67386837 original size:26 final size:26
Alignment explanation
Indices: 67386808--67386915 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
67386798 TGGTACAAAT
67386808 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
67386834 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
67386860 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
67386886 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
67386912 TGAT
1 TGAT
67386916 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:67394408 original size:28 final size:28
Alignment explanation
Indices: 67394368--67394460 Score: 159
Period size: 28 Copynumber: 3.3 Consensus size: 28
67394358 ATGTACTAGA
67394368 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
67394396 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
* * *
67394424 ATACCCCTATGTATGTAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATTACCATT
67394452 ATACCCCTA
1 ATACCCCTA
67394461 GGGTTAATTT
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 62 1.00
ACGTcount: A:0.34, C:0.26, G:0.08, T:0.32
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATTACCATT
Found at i:67394624 original size:27 final size:27
Alignment explanation
Indices: 67394576--67394655 Score: 106
Period size: 27 Copynumber: 2.9 Consensus size: 27
67394566 CTAGTGGCTA
*
67394576 TGCCACAAATTATCTGTTCTGGTGGCCC
1 TGCCACAAA-TATCTGTTCTGGTGGCAC
*
67394604 TGCCACATATATCTGTTCTGGTGGCAC
1 TGCCACAAATATCTGTTCTGGTGGCAC
*
67394631 TGCCACAAAATATTTGTATCTGGTG
1 TGCCAC-AAATATCTGT-TCTGGTG
67394656 ACTCTGTCAC
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
27 23 0.50
28 16 0.35
29 7 0.15
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.34
Consensus pattern (27 bp):
TGCCACAAATATCTGTTCTGGTGGCAC
Found at i:67394666 original size:29 final size:28
Alignment explanation
Indices: 67394576--67394666 Score: 94
Period size: 27 Copynumber: 3.2 Consensus size: 28
67394566 CTAGTGGCTA
* * *
67394576 TGCCACAAATTATCTGTTCTGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
* *
67394604 TGCCAC-ATATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
* *
67394631 TGCCACAAAATATTTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
67394660 TGTCACA
1 TGCCACA
67394667 TTTTCTGTAT
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
27 24 0.45
28 14 0.26
29 15 0.28
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.33
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:67394674 original size:55 final size:56
Alignment explanation
Indices: 67394576--67394680 Score: 133
Period size: 55 Copynumber: 1.9 Consensus size: 56
67394566 CTAGTGGCTA
* *
67394576 TGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-TCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTATCTGGTGGCAC
* * * *
67394631 TGCCACAAAATATTTGTATCTGGTGACTCTGTCACAT-TTTCTGTATCTGG
1 TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTATCTGG
67394681 CAGCCATGCT
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
55 21 0.50
56 21 0.50
ACGTcount: A:0.20, C:0.24, G:0.20, T:0.36
Consensus pattern (56 bp):
TGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTATCTGGTGGCAC
Found at i:67395774 original size:11 final size:10
Alignment explanation
Indices: 67395746--67395779 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
67395736 AGCCTGTAAG
67395746 TATTCTGAAT
1 TATTCTGAAT
*
67395756 TTTTCTGAAT
1 TATTCTGAAT
67395766 ATATTCTGAAT
1 -TATTCTGAAT
67395777 TAT
1 TAT
67395780 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:67402306 original size:28 final size:28
Alignment explanation
Indices: 67402262--67402354 Score: 159
Period size: 28 Copynumber: 3.3 Consensus size: 28
67402252 ATGTACTAGA
*
67402262 ATACCCCTATGTTTGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
67402290 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
* *
67402318 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATTACCATT
67402346 ATACCCCTA
1 ATACCCCTA
67402355 GGGTTAATTT
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 62 1.00
ACGTcount: A:0.33, C:0.27, G:0.08, T:0.32
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATTACCATT
Found at i:67402516 original size:27 final size:27
Alignment explanation
Indices: 67402458--67402547 Score: 119
Period size: 28 Copynumber: 3.2 Consensus size: 27
67402448 AGGAAGCATC
67402458 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
67402486 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
67402513 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
67402542 CTGGTG
1 CTGGTG
67402548 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 23 0.42
28 25 0.45
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:67402566 original size:55 final size:56
Alignment explanation
Indices: 67402458--67402572 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
67402448 AGGAAGCATC
* *
67402458 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
67402513 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
67402569 CTGG
1 CTGG
67402573 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.58
56 21 0.40
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:67408240 original size:24 final size:24
Alignment explanation
Indices: 67408213--67408267 Score: 92
Period size: 24 Copynumber: 2.2 Consensus size: 24
67408203 ATTAAAGAAC
*
67408213 TTCATCTATGGGTTTAAGCATACT
1 TTCATCTATGGGATTAAGCATACT
67408237 TTCATCTATGGGATTAAGCATACT
1 TTCATCTATGGGATTAAGCATACT
67408261 TCTCATC
1 T-TCATC
67408268 AATAGTATTA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
24 24 0.83
25 5 0.17
ACGTcount: A:0.25, C:0.20, G:0.15, T:0.40
Consensus pattern (24 bp):
TTCATCTATGGGATTAAGCATACT
Found at i:67408277 original size:25 final size:24
Alignment explanation
Indices: 67408226--67408277 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
67408216 ATCTATGGGT
* *
67408226 TTAAGCATACTTTCATCTATGGGA
1 TTAAGCATACTTTCATCAATAGGA
*
67408250 TTAAGCATACTTCTCATCAATAGTA
1 TTAAGCATACTT-TCATCAATAGGA
67408275 TTA
1 TTA
67408278 CAAATTTTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 12 0.50
25 12 0.50
ACGTcount: A:0.33, C:0.17, G:0.12, T:0.38
Consensus pattern (24 bp):
TTAAGCATACTTTCATCAATAGGA
Found at i:67410707 original size:20 final size:20
Alignment explanation
Indices: 67410669--67410708 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
67410659 ATTTAATAAA
**
67410669 TAAAAATAAAAATCTAAAAC
1 TAAAAATAAAAATAAAAAAC
*
67410689 TAAAACTAAAAATAAAAAAC
1 TAAAAATAAAAATAAAAAAC
67410709 ATATAATTTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.72, C:0.10, G:0.00, T:0.17
Consensus pattern (20 bp):
TAAAAATAAAAATAAAAAAC
Found at i:67410755 original size:9 final size:9
Alignment explanation
Indices: 67410726--67410766 Score: 55
Period size: 9 Copynumber: 4.6 Consensus size: 9
67410716 TTTATGCAAA
67410726 TAATTCGGT
1 TAATTCGGT
* *
67410735 TAATTTGAT
1 TAATTCGGT
67410744 TAATTCGGT
1 TAATTCGGT
*
67410753 TAATTCAGT
1 TAATTCGGT
67410762 TAATT
1 TAATT
67410767 TCAAACTTGT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.29, C:0.07, G:0.15, T:0.49
Consensus pattern (9 bp):
TAATTCGGT
Found at i:67411337 original size:17 final size:16
Alignment explanation
Indices: 67411277--67411338 Score: 54
Period size: 17 Copynumber: 3.6 Consensus size: 16
67411267 ATTTATTATT
67411277 AAATATTTATAAATTATA
1 AAATATTTAT-AA-TATA
*
67411295 AAATATTTATTATA-A
1 AAATATTTATAATATA
*
67411310 AAATAAATTTATAATATT
1 AAAT--ATTTATAATATA
67411328 AAATAGTTTAT
1 AAATA-TTTAT
67411339 TAAAACAATA
Statistics
Matches: 37, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
15 5 0.14
16 3 0.08
17 15 0.41
18 14 0.38
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (16 bp):
AAATATTTATAATATA
Found at i:67411349 original size:34 final size:35
Alignment explanation
Indices: 67411261--67411350 Score: 93
Period size: 33 Copynumber: 2.7 Consensus size: 35
67411251 TTTTATACTC
* *
67411261 TAAAACATTTATTAT-TAAAT--ATTTATAAATTA
1 TAAAATATTTATTATAAAAATAAATTTATAAATTA
67411293 TAAAATATTTATTATAAAAATAAATTTAT-AA-TA
1 TAAAATATTTATTATAAAAATAAATTTATAAATTA
*
67411326 TTAAATAGTTTATTA-AAACAATAAA
1 TAAAATA-TTTATTATAAA-AATAAA
67411351 GTATATTAAT
Statistics
Matches: 50, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
32 14 0.28
33 15 0.30
34 15 0.30
35 6 0.12
ACGTcount: A:0.54, C:0.02, G:0.01, T:0.42
Consensus pattern (35 bp):
TAAAATATTTATTATAAAAATAAATTTATAAATTA
Found at i:67417342 original size:23 final size:22
Alignment explanation
Indices: 67417280--67417336 Score: 78
Period size: 22 Copynumber: 2.6 Consensus size: 22
67417270 ATATAGAGCC
*
67417280 ACACGCCCATGCGAGACAGGGG
1 ACACGCCCATGTGAGACAGGGG
*
67417302 ACATGCCCATGTGAGACAGGGG
1 ACACGCCCATGTGAGACAGGGG
* *
67417324 GCACGCCCGTGTG
1 ACACGCCCATGTG
67417337 TCGACACTTT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.23, C:0.30, G:0.37, T:0.11
Consensus pattern (22 bp):
ACACGCCCATGTGAGACAGGGG
Found at i:67422994 original size:25 final size:25
Alignment explanation
Indices: 67422966--67423013 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
67422956 TAAGTTCGCG
67422966 TAACAA-AGTAACACATGAGTTCAAA
1 TAACAACA-TAACACATGAGTTCAAA
**
67422991 TAACAACATAATGCATGAGTTCA
1 TAACAACATAACACATGAGTTCA
67423014 TGCAAAAGCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 19 0.95
26 1 0.05
ACGTcount: A:0.48, C:0.17, G:0.12, T:0.23
Consensus pattern (25 bp):
TAACAACATAACACATGAGTTCAAA
Found at i:67424872 original size:16 final size:17
Alignment explanation
Indices: 67424851--67424895 Score: 62
Period size: 16 Copynumber: 2.9 Consensus size: 17
67424841 ATTAAGTTGA
67424851 GAAAA-TAATTTAATTT
1 GAAAATTAATTTAATTT
67424867 GAAAATTAA-TTAA-TT
1 GAAAATTAATTTAATTT
67424882 -AAAATTAATTTAAT
1 GAAAATTAATTTAAT
67424896 AAATAATATT
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
14 8 0.31
15 6 0.23
16 9 0.35
17 3 0.12
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.42
Consensus pattern (17 bp):
GAAAATTAATTTAATTT
Found at i:67427843 original size:46 final size:45
Alignment explanation
Indices: 67427742--67427871 Score: 183
Period size: 46 Copynumber: 2.9 Consensus size: 45
67427732 ATATATCCGT
* * *
67427742 GCCGATGCATGTCCTAGACATGTCTTACACTAGC-ACATCTTGTA
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTACATCTCGTA
*
67427786 GCTGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCG-A
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC-TACATCTCGTA
67427831 GCCCGATGCATGTCCCAGACATGTCTTACACTGGCTCACAT
1 G-CCGATGCATGTCCCAGACATGTCTTACACTGGCT-ACAT
67427872 AACAGCAGTG
Statistics
Matches: 77, Mismatches: 5, Indels: 6
0.88 0.06 0.07
Matches are distributed among these distances:
44 31 0.40
45 3 0.04
46 43 0.56
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTACATCTCGTA
Found at i:67430643 original size:49 final size:50
Alignment explanation
Indices: 67430563--67430795 Score: 258
Period size: 49 Copynumber: 4.7 Consensus size: 50
67430553 ATCTATTGTG
*
67430563 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATT
* * **
67430613 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACTCG-ATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CGAATAA-TT
* * * * * **
67430663 CGATCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATC-AGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGA-ATAATT
** * *
67430713 AGGTCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATT
*
67430763 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
67430796 TGCGTACCAG
Statistics
Matches: 150, Mismatches: 27, Indels: 13
0.79 0.14 0.07
Matches are distributed among these distances:
49 69 0.46
50 47 0.31
51 34 0.23
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATT
Found at i:67434897 original size:50 final size:50
Alignment explanation
Indices: 67434779--67434911 Score: 196
Period size: 50 Copynumber: 2.7 Consensus size: 50
67434769 CTGGTACGCA
* * ** *
67434779 TAGTAGCTTGCACTTAGTACTACACATGCGACC-AATTATCCGGTACACG
1 TAGTAGCTTGCACTTAGTACTACACACGTGACCTAACCATCCGATACACG
*
67434828 TAGTAGCTTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCTTGCACTTAGTACTACACACGTGACCTAACCATCCGATACACG
*
67434878 TAGTAGCCTGCACTTAGTACTACACACGTGACCT
1 TAGTAGCTTGCACTTAGTACTACACACGTGACCT
67434912 CACAATAGAT
Statistics
Matches: 76, Mismatches: 7, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
49 31 0.41
50 45 0.59
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (50 bp):
TAGTAGCTTGCACTTAGTACTACACACGTGACCTAACCATCCGATACACG
Found at i:67438948 original size:19 final size:20
Alignment explanation
Indices: 67438904--67438949 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
67438894 AATATGACAC
*
67438904 CAAATTAACTTTTTGTTTTA
1 CAAATTAACTTTTTATTTTA
**
67438924 TTAATTAAC-TTTTATTTTA
1 CAAATTAACTTTTTATTTTA
67438943 CAAATTA
1 CAAATTA
67438950 CCTTAATAAC
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.35, C:0.09, G:0.02, T:0.54
Consensus pattern (20 bp):
CAAATTAACTTTTTATTTTA
Found at i:67444867 original size:40 final size:40
Alignment explanation
Indices: 67444815--67444907 Score: 118
Period size: 40 Copynumber: 2.3 Consensus size: 40
67444805 CTCGGTATCA
* *
67444815 CACACTTAGTGCC-TCATGTAGCCGAAGCTATTT-CAACTCG
1 CACACTTAGTGCCAT-ATATAGCCGAAGCTATTTGAAAC-CG
* *
67444855 CACACTTAGTGCCATTTATAGTCGAAGCTATTTGAAACCG
1 CACACTTAGTGCCATATATAGCCGAAGCTATTTGAAACCG
67444895 CACACTTAGTGCC
1 CACACTTAGTGCC
67444908 GAACTTAATC
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
40 43 0.91
41 4 0.09
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.28
Consensus pattern (40 bp):
CACACTTAGTGCCATATATAGCCGAAGCTATTTGAAACCG
Found at i:67450961 original size:38 final size:38
Alignment explanation
Indices: 67450918--67450993 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
67450908 CCATTTAAGT
67450918 TCAATTATACAGACTTACCTCGTATACGAAATTGACAG
1 TCAATTATACAGACTTACCTCGTATACGAAATTGACAG
67450956 TCAATTATACAGACTTACCTCGTATACGAAATTGACAG
1 TCAATTATACAGACTTACCTCGTATACGAAATTGACAG
67450994 ATCGGGTCGA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.37, C:0.21, G:0.13, T:0.29
Consensus pattern (38 bp):
TCAATTATACAGACTTACCTCGTATACGAAATTGACAG
Found at i:67460858 original size:33 final size:33
Alignment explanation
Indices: 67460805--67460879 Score: 91
Period size: 33 Copynumber: 2.3 Consensus size: 33
67460795 GGCCCTGTCG
* * *
67460805 TGGTCTT-TCATTCACATGCCATAACTCGGTTA
1 TGGTCTTATTATTCACATGCCATAACCCGGCTA
*
67460837 TGGTCTTATTATTCA-ATTGCCATAGCCCGGCTA
1 TGGTCTTATTATTCACA-TGCCATAACCCGGCTA
67460870 TGGTCTTATT
1 TGGTCTTATT
67460880 TGGCAACTTG
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
32 8 0.22
33 29 0.78
ACGTcount: A:0.20, C:0.23, G:0.17, T:0.40
Consensus pattern (33 bp):
TGGTCTTATTATTCACATGCCATAACCCGGCTA
Found at i:67462728 original size:34 final size:34
Alignment explanation
Indices: 67462690--67462862 Score: 148
Period size: 34 Copynumber: 5.0 Consensus size: 34
67462680 ACGCCTAGCG
** *
67462690 CTAGTCGGATAACCGACAATAGTTGTGCCCTGCA
1 CTAGTCGGATAATTGACAATAATTGTGCCCTGCA
** * * * *
67462724 CTAGTCAAATAAATTGATAAATAATTGTACCCAGCG
1 CTAGTCGGAT-AATTGA-CAATAATTGTGCCCTGCA
* * *
67462760 CTAGTCGGATAATCGACAATAGTTGTGCCCTACA
1 CTAGTCGGATAATTGACAATAATTGTGCCCTGCA
* * *
67462794 CTAGTCGAATAAATTGACAAATAATTGTGCCCAGCT
1 CTAGTCGGAT-AATTGAC-AATAATTGTGCCCTGCA
* * *
67462830 CTAGTCAGATAACTGACAATAATTGTGACCTGC
1 CTAGTCGGATAATTGACAATAATTGTGCCCTGC
67462863 TTTAGTCAAA
Statistics
Matches: 106, Mismatches: 29, Indels: 8
0.74 0.20 0.06
Matches are distributed among these distances:
34 43 0.41
35 21 0.20
36 42 0.40
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.27
Consensus pattern (34 bp):
CTAGTCGGATAATTGACAATAATTGTGCCCTGCA
Found at i:67462799 original size:70 final size:70
Alignment explanation
Indices: 67462686--67462990 Score: 324
Period size: 70 Copynumber: 4.4 Consensus size: 70
67462676 TTTTACGCCT
*
67462686 AGCGCTAGTCGGATAACCGACAATAGTTGTGCCCTGCACTAGTCAAATAAATTGATAAATAATTG
1 AGCGCTAGTCGGATAACCGACAATAGTTGTGCCCTGCACTAGTCAAATAAATTGACAAATAATTG
67462751 TACCC
66 TACCC
* * *
67462756 AGCGCTAGTCGGATAATCGACAATAGTTGTGCCCTACACTAGTCGAATAAATTGACAAATAATTG
1 AGCGCTAGTCGGATAACCGACAATAGTTGTGCCCTGCACTAGTCAAATAAATTGACAAATAATTG
*
67462821 TGCCC
66 TACCC
* * * * * ** **
67462826 AGCTCTAGTCAGATAACTGACAATAATTGTGACCTGCTTTAGTCAAATAAATCAACAAATAATTG
1 AGCGCTAGTCGGATAACCGACAATAGTTGTGCCCTGCACTAGTCAAATAAATTGACAAATAATTG
* *
67462891 CACCT
66 TACCC
* * * * ** **
67462896 AGAGCTAGTCGGATAGCCGACAATTA-TTGTGACTTGCACTAGTTGAATAAATCAACAAATAATT
1 AGCGCTAGTCGGATAACCGACAA-TAGTTGTGCCCTGCACTAGTCAAATAAATTGACAAATAATT
**
67462960 GGGCCC
65 GTACCC
* ** *
67462966 ATCGCTAGTCAAATAACTGACAATA
1 AGCGCTAGTCGGATAACCGACAATA
67462991 CCAATTACAC
Statistics
Matches: 195, Mismatches: 39, Indels: 3
0.82 0.16 0.01
Matches are distributed among these distances:
69 2 0.01
70 191 0.98
71 2 0.01
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (70 bp):
AGCGCTAGTCGGATAACCGACAATAGTTGTGCCCTGCACTAGTCAAATAAATTGACAAATAATTG
TACCC
Found at i:67462822 original size:36 final size:36
Alignment explanation
Indices: 67462707--67462890 Score: 137
Period size: 36 Copynumber: 5.2 Consensus size: 36
67462697 GATAACCGAC
* * *
67462707 AATAGTTGTGCCCTGCACTAGTCAAATAAATTGATA
1 AATAATTGTGCCCTACACTAGTCAAATAAATTGACA
* * ** *
67462743 AATAATTGTACCC-AGCGCTAGTCGGAT-AATCGAC-
1 AATAATTGTGCCCTA-CACTAGTCAAATAAATTGACA
* *
67462777 AATAGTTGTGCCCTACACTAGTCGAATAAATTGACA
1 AATAATTGTGCCCTACACTAGTCAAATAAATTGACA
* * *
67462813 AATAATTGTGCCC-AGCTCTAGTCAGAT-AACTGAC-
1 AATAATTGTGCCCTA-CACTAGTCAAATAAATTGACA
* * ** **
67462847 AATAATTGTGACCTGCTTTAGTCAAATAAATCAACA
1 AATAATTGTGCCCTACACTAGTCAAATAAATTGACA
67462883 AATAATTG
1 AATAATTG
67462891 CACCTAGAGC
Statistics
Matches: 115, Mismatches: 25, Indels: 16
0.74 0.16 0.10
Matches are distributed among these distances:
34 43 0.37
35 23 0.20
36 49 0.43
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.28
Consensus pattern (36 bp):
AATAATTGTGCCCTACACTAGTCAAATAAATTGACA
Found at i:67462944 original size:140 final size:140
Alignment explanation
Indices: 67462686--67462990 Score: 378
Period size: 140 Copynumber: 2.2 Consensus size: 140
67462676 TTTTACGCCT
* * * * ** *
67462686 AGCGCTAGTCGGATAACCGACAATAGTTGTGCCCTGCACTAGTCAAATAAATTGATAAATAATTG
1 AGCGCTAGTCAGATAACTGACAATAATTGTGACCTGCACTAGTCAAATAAATCAACAAATAATTG
* * * * **
67462751 TACCCAGCGCTAGTCGGATAATCGACAATAGTTGTGCCCTACACTAGTCGAATAAATTGACAAAT
66 CACCCAGAGCTAGTCGGATAACCGACAATAGTTGTGACCTACACTAGTCGAATAAATCAACAAAT
*
67462816 AATTGTGCCC
131 AATTGGGCCC
* **
67462826 AGCTCTAGTCAGATAACTGACAATAATTGTGACCTGCTTTAGTCAAATAAATCAACAAATAATTG
1 AGCGCTAGTCAGATAACTGACAATAATTGTGACCTGCACTAGTCAAATAAATCAACAAATAATTG
* * * * *
67462891 CACCTAGAGCTAGTCGGATAGCCGACAATTA-TTGTGACTTGCACTAGTTGAATAAATCAACAAA
66 CACCCAGAGCTAGTCGGATAACCGACAA-TAGTTGTGACCTACACTAGTCGAATAAATCAACAAA
67462955 TAATTGGGCCC
130 TAATTGGGCCC
* *
67462966 ATCGCTAGTCAAATAACTGACAATA
1 AGCGCTAGTCAGATAACTGACAATA
67462991 CCAATTACAC
Statistics
Matches: 139, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
140 137 0.99
141 2 0.01
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (140 bp):
AGCGCTAGTCAGATAACTGACAATAATTGTGACCTGCACTAGTCAAATAAATCAACAAATAATTG
CACCCAGAGCTAGTCGGATAACCGACAATAGTTGTGACCTACACTAGTCGAATAAATCAACAAAT
AATTGGGCCC
Found at i:67466871 original size:46 final size:46
Alignment explanation
Indices: 67466821--67466993 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
67466811 TGGTTGAGCA
*
67466821 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
67466867 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
67466914 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
67466960 -CTCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
67466994 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 13, Indels: 16
0.79 0.10 0.12
Matches are distributed among these distances:
43 6 0.06
45 4 0.04
46 59 0.56
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:67466977 original size:93 final size:93
Alignment explanation
Indices: 67466818--67466988 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
67466808 GGATGGTTGA
*
67466818 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAGT
67466883 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
67466911 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG-CTCGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTC-CGAACTCGTTGAG
*
67466975 TTGAGTCTGAGTTC
65 TTGAGTCCGAGTTC
67466989 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 1 0.01
93 71 0.99
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:67467255 original size:19 final size:20
Alignment explanation
Indices: 67467218--67467255 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
67467208 ATAAGGTGGT
67467218 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
67467238 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
67467256 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:67474372 original size:46 final size:46
Alignment explanation
Indices: 67474322--67474494 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
67474312 TGGTTGAGCA
*
67474322 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
67474368 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
67474415 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
67474461 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
67474495 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:67474478 original size:93 final size:93
Alignment explanation
Indices: 67474319--67474489 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
67474309 GGATGGTTGA
* *
67474319 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
67474384 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
67474412 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
67474477 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
67474490 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:67474755 original size:19 final size:20
Alignment explanation
Indices: 67474718--67474755 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
67474708 ATAAGGTGGT
67474718 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
67474738 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
67474756 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:67479124 original size:20 final size:20
Alignment explanation
Indices: 67479099--67479137 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
67479089 CAATTACTTG
*
67479099 AAGAAAATATGCTGGTGGTA
1 AAGAAAATATACTGGTGGTA
67479119 AAGAAAATATACTGGTGGT
1 AAGAAAATATACTGGTGGT
67479138 TAGGAATGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.41, C:0.05, G:0.28, T:0.26
Consensus pattern (20 bp):
AAGAAAATATACTGGTGGTA
Found at i:67486944 original size:14 final size:15
Alignment explanation
Indices: 67486925--67486960 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 15
67486915 CATAAATCAC
67486925 TTTTTTTTTC-G-AA
1 TTTTTTTTTCAGAAA
67486938 -TTTTTTTTCAGAAA
1 TTTTTTTTTCAGAAA
67486952 TTTTTTTTT
1 TTTTTTTTT
67486961 TCAAACTTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
12 9 0.45
13 1 0.05
14 2 0.10
15 8 0.40
ACGTcount: A:0.17, C:0.06, G:0.06, T:0.72
Consensus pattern (15 bp):
TTTTTTTTTCAGAAA
Found at i:67496078 original size:52 final size:50
Alignment explanation
Indices: 67495970--67496147 Score: 232
Period size: 52 Copynumber: 3.5 Consensus size: 50
67495960 CGAATACCTG
* * * * * * *
67495970 GTGGCCTGCACACAGCACCACCCTTGTAGTCAAAGCTACCTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGT-GACCAAGCTATCTTCTTCACAAA
*
67496021 GTGGCCTTCACATAGTACCACACTTGTGACCAAATCTATCTTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGACC-AAGCTATC-TTCTTCACAAA
*
67496073 GTGGCCTTCACATAGTACCACACTTGTGACCAAGCTATC-TCTTCTCAAA
1 GTGGCCTTCACATAGTACCACACTTGTGACCAAGCTATCTTCTTCACAAA
*
67496122 GTGGTCTTCACATAGTACCACACTTG
1 GTGGCCTTCACATAGTACCACACTTG
67496148 AGTCACTAGT
Statistics
Matches: 114, Mismatches: 11, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
49 34 0.30
50 2 0.02
51 36 0.32
52 42 0.37
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.28
Consensus pattern (50 bp):
GTGGCCTTCACATAGTACCACACTTGTGACCAAGCTATCTTCTTCACAAA
Found at i:67496135 original size:49 final size:51
Alignment explanation
Indices: 67496000--67496147 Score: 237
Period size: 52 Copynumber: 2.9 Consensus size: 51
67495990 CCCTTGTAGT
*
67496000 CAAAGCTACCTTCTTCACAAAGTGGCCTTCACATAGTACCACACTTGTGAC
1 CAAAGCTATCTTCTTCACAAAGTGGCCTTCACATAGTACCACACTTGTGAC
*
67496051 CAAATCTATCTTTCTTCACAAAGTGGCCTTCACATAGTACCACACTTGTGAC
1 CAAAGCTATC-TTCTTCACAAAGTGGCCTTCACATAGTACCACACTTGTGAC
* *
67496103 C-AAGCTATC-TCTTCTCAAAGTGGTCTTCACATAGTACCACACTTG
1 CAAAGCTATCTTCTTCACAAAGTGGCCTTCACATAGTACCACACTTG
67496148 AGTCACTAGT
Statistics
Matches: 91, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
49 34 0.37
51 15 0.16
52 42 0.46
ACGTcount: A:0.28, C:0.30, G:0.13, T:0.29
Consensus pattern (51 bp):
CAAAGCTATCTTCTTCACAAAGTGGCCTTCACATAGTACCACACTTGTGAC
Found at i:67498964 original size:46 final size:46
Alignment explanation
Indices: 67498914--67499089 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
67498904 TGGTTGAGCA
67498914 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
67498960 TCCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
67499005 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
67499053 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
67499090 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 28 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:67499070 original size:93 final size:93
Alignment explanation
Indices: 67498911--67499081 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
67498901 GGATGGTTGA
* *
67498911 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
67498976 TGAGTCTGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
67499004 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
67499069 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
67499082 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:67502301 original size:14 final size:14
Alignment explanation
Indices: 67502282--67502308 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
67502272 CATGATAAAG
67502282 TAAAATACAAGTGC
1 TAAAATACAAGTGC
67502296 TAAAATACAAGTG
1 TAAAATACAAGTG
67502309 TGCAAGAGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.11, G:0.15, T:0.22
Consensus pattern (14 bp):
TAAAATACAAGTGC
Found at i:67509345 original size:40 final size:40
Alignment explanation
Indices: 67509297--67509502 Score: 317
Period size: 40 Copynumber: 5.2 Consensus size: 40
67509287 GGACTAAGAT
67509297 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* * *
67509337 CCGAAGGCATTTGTGCTAGTTACTATATCCAGGTTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
67509377 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
67509417 CCGAAGGCATTTGTGCTAGTGATTATATCTGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* * *
67509457 CCGAAGGCATTTGTGCGAGTTG-CTATATCC-CGCTAAATC
1 CCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTC
67509496 CCGAAGG
1 CCGAAGG
67509503 TACTTGGGTT
Statistics
Matches: 152, Mismatches: 13, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 14 0.09
40 136 0.89
41 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.29
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
Found at i:67511599 original size:24 final size:24
Alignment explanation
Indices: 67511430--67511587 Score: 262
Period size: 24 Copynumber: 6.6 Consensus size: 24
67511420 TTCAACTCCA
* * *
67511430 CACACATAGTGCCAAATAATTACG
1 CACACATAGTGCCATACAAATACG
*
67511454 CACACATAGTGCCATACATATACG
1 CACACATAGTGCCATACAAATACG
67511478 CACACATAGTGCCATACAAATACG
1 CACACATAGTGCCATACAAATACG
*
67511502 CACACATAGTGCCATACAAATATG
1 CACACATAGTGCCATACAAATACG
67511526 CACACATAGTGCCATACAAATACG
1 CACACATAGTGCCATACAAATACG
*
67511550 CACACATAGTGCCATACAATTACG
1 CACACATAGTGCCATACAAATACG
67511574 CACACATAGTGCCA
1 CACACATAGTGCCA
67511588 CTCAAATCCG
Statistics
Matches: 126, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 126 1.00
ACGTcount: A:0.40, C:0.28, G:0.13, T:0.19
Consensus pattern (24 bp):
CACACATAGTGCCATACAAATACG
Found at i:67515966 original size:12 final size:12
Alignment explanation
Indices: 67515949--67515974 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
67515939 CTCAAAGATA
67515949 TTTGGTTCCCTC
1 TTTGGTTCCCTC
67515961 TTTGGTTCCCTC
1 TTTGGTTCCCTC
67515973 TT
1 TT
67515975 ATGTTAAGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.31, G:0.15, T:0.54
Consensus pattern (12 bp):
TTTGGTTCCCTC
Found at i:67524689 original size:46 final size:44
Alignment explanation
Indices: 67524585--67524797 Score: 134
Period size: 46 Copynumber: 4.7 Consensus size: 44
67524575 TACGCGTGCT
* * *
67524585 GATGCATGTCCCAGATATGTCTTACACTAGCACAACTC-TT-A-GCC
1 GATGCATGTCCCAGACACGTCTTACACT-G--CATCTCATTGAGGCC
67524629 GATGCATG-CTCCAGACACGTCTTACACTGCTATCTC-TGTCGAGGCC
1 GATGCATGTC-CCAGACACGTCTTACACTGC-ATCTCAT-T-GAGGCC
** * *
67524675 GATGCATGTCCCAGACATATCTTACACTGACA-CTCATCTCTATGCC
1 GATGCATGTCCCAGACACGTCTTACACTG-CATCTCAT-T-GAGGCC
* *
67524721 GATGCCATGTCCCAGACATGGTCTTACACTAGC-TCTCATAATGTGGCC
1 GATG-CATGTCCCAGACA-CGTCTTACACT-GCATCTCAT--TGAGGCC
* * *
67524769 GAAGCATATCCCAAACACGTCTTACACTG
1 GATGCATGTCCCAGACACGTCTTACACTG
67524798 GCGCACAAAT
Statistics
Matches: 137, Mismatches: 18, Indels: 27
0.75 0.10 0.15
Matches are distributed among these distances:
41 1 0.01
42 5 0.04
43 3 0.02
44 24 0.18
45 5 0.04
46 50 0.36
47 26 0.19
48 21 0.15
49 2 0.01
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.26
Consensus pattern (44 bp):
GATGCATGTCCCAGACACGTCTTACACTGCATCTCATTGAGGCC
Found at i:67524781 original size:94 final size:91
Alignment explanation
Indices: 67524530--67524797 Score: 235
Period size: 94 Copynumber: 2.9 Consensus size: 91
67524520 ATGGGATATA
** * * * *
67524530 TTGCCGATGCCATGTTTCAGACATGATCTTACACTGGCTCTCATATACGCGTGCTGATGCATGTC
1 TTGCCGATGCCATGTCCCAGACATGGTCTTACACT-GCTCTCATA-ATGAG-GCCGATGCATGTC
*
67524595 CCAGATATGTCTTACACT-AGCACAACTC
63 CCAGACATGTCTTACACTGAGCACAACTC
* *
67524623 TTAGCCGATG-CATG-CTCCAGACA-CGTCTTACACTGCTATCTC-T-GTCGAGGCCGATGCATG
1 TT-GCCGATGCCATGTC-CCAGACATGGTCTTACACTGC--TCTCATAAT-GAGGCCGATGCATG
* *
67524683 TCCCAGACATATCTTACACTGA-CACTCATCTC
61 TCCCAGACATGTCTTACACTGAGCA--CAACTC
* * *
67524715 TATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTGGCCGAAGCATATCC
1 T-TGCCGATGCCATGTCCCAGACATGGTCTTACACT-GCTCTCATAATGAGGCCGATGCATGTCC
* *
67524780 CAAACACGTCTTACACTG
64 CAGACATGTCTTACACTG
67524798 GCGCACAAAT
Statistics
Matches: 141, Mismatches: 19, Indels: 29
0.75 0.10 0.15
Matches are distributed among these distances:
90 30 0.21
91 5 0.04
92 23 0.16
93 32 0.23
94 48 0.34
95 3 0.02
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (91 bp):
TTGCCGATGCCATGTCCCAGACATGGTCTTACACTGCTCTCATAATGAGGCCGATGCATGTCCCA
GACATGTCTTACACTGAGCACAACTC
Found at i:67531157 original size:25 final size:25
Alignment explanation
Indices: 67531128--67531176 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
67531118 GGGTTTAGAG
67531128 AAGATGAAATTTCATCAAAAAGAAA
1 AAGATGAAATTTCATCAAAAAGAAA
*
67531153 AAGATGAAATTTGATCAAAAAGAA
1 AAGATGAAATTTCATCAAAAAGAA
67531177 CAAAAATAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.59, C:0.06, G:0.14, T:0.20
Consensus pattern (25 bp):
AAGATGAAATTTCATCAAAAAGAAA
Found at i:67532024 original size:19 final size:18
Alignment explanation
Indices: 67531987--67532030 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
67531977 ATACATACAG
67531987 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
67532004 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
67532023 TACTAATT
1 TAATAATT
67532031 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:67536368 original size:19 final size:18
Alignment explanation
Indices: 67536331--67536374 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
67536321 ATACATACAG
67536331 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
67536348 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
67536367 TACTAATT
1 TAATAATT
67536375 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:67539798 original size:48 final size:47
Alignment explanation
Indices: 67539738--67539990 Score: 164
Period size: 47 Copynumber: 5.4 Consensus size: 47
67539728 GTCATGTTTT
*
67539738 AGACATGATCTTACACTGGCTCTCATATACGCGTGCTGATGCATGTCCC
1 AGACATG-TCTTACACTGGCTCTCATAT-CGCGTGCCGATGCATGTCCC
* * * * * *
67539787 AGATATGTCTTACACTAG--CACA-A-CTCTTAGCCGATGCATGCCCC
1 AGACATGTCTTACACTGGCTCTCATATCGCGT-GCCGATGCATGTCCC
* * *
67539831 AGACACGTCTTACACTGGCTATCTC-TGTCGAG-GCCGATGCATGTCCC
1 AGACATGTCTTACACTGGC--TCTCATATCGCGTGCCGATGCATGTCCC
* * * * * * *
67539878 AAACATATCTTACACTGACACTCATCTC-TGTGCTGATGCTATGTCCC
1 AGACATGTCTTACACTGGCTCTCATATCGCGTGCCGATGC-ATGTCCC
* * * *
67539925 AGACATGGTCTTACACTGGCTCTCATAAT-GTG-GCCAAAGCATGTTCC
1 AGACAT-GTCTTACACTGGCTCTCAT-ATCGCGTGCCGATGCATGTCCC
* *
67539972 AAACACGTCTTACACTGGC
1 AGACATGTCTTACACTGGC
67539991 ACACAAATCA
Statistics
Matches: 156, Mismatches: 35, Indels: 29
0.71 0.16 0.13
Matches are distributed among these distances:
43 3 0.02
44 28 0.18
45 5 0.03
46 26 0.17
47 51 0.33
48 33 0.21
49 10 0.06
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.27
Consensus pattern (47 bp):
AGACATGTCTTACACTGGCTCTCATATCGCGTGCCGATGCATGTCCC
Found at i:67539889 original size:91 final size:94
Alignment explanation
Indices: 67539775--67539945 Score: 217
Period size: 91 Copynumber: 1.8 Consensus size: 94
67539765 TACGCGTGCT
* * *
67539775 GATGCATGTCCCAGATATGTCTTACACT-AGCA-CAACTCT-TAGCCGATGC-ATGCCCCAGACA
1 GATGCATGTCCCAAACATATCTTACACTGA-CACCAACTCTGT-GCCGATGCTATGCCCCAGACA
67539836 -CGTCTTACACTGGCTATCTCTGTCGAGGCC
64 TCGTCTTACACTGGCTATCTCTGTCGAGGCC
* * *
67539866 GATGCATGTCCCAAACATATCTTACACTGACACTCATCTCTGTGCTGATGCTATGTCCCAGACAT
1 GATGCATGTCCCAAACATATCTTACACTGACAC-CAACTCTGTGCCGATGCTATGCCCCAGACAT
*
67539931 GGTCTTACACTGGCT
65 CGTCTTACACTGGCT
67539946 CTCATAATGT
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
91 27 0.40
92 1 0.01
93 13 0.19
94 12 0.18
95 14 0.21
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.27
Consensus pattern (94 bp):
GATGCATGTCCCAAACATATCTTACACTGACACCAACTCTGTGCCGATGCTATGCCCCAGACATC
GTCTTACACTGGCTATCTCTGTCGAGGCC
Found at i:67541499 original size:25 final size:25
Alignment explanation
Indices: 67541471--67541522 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
67541461 GAGTCCAAAA
67541471 ATATCGCATTTATTGTTCACAGATG
1 ATATCGCATTTATTGTTCACAGATG
67541496 ATATCGCATTTATTGTTCACAGATG
1 ATATCGCATTTATTGTTCACAGATG
67541521 AT
1 AT
67541523 TGTATTCTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.40
Consensus pattern (25 bp):
ATATCGCATTTATTGTTCACAGATG
Found at i:67543475 original size:11 final size:11
Alignment explanation
Indices: 67543459--67543498 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
67543449 GATGACGATG
*
67543459 ATTTTAAAATA
1 ATTTTAAAATT
67543470 ATTTTAAAAAATT
1 ATTTT--AAAATT
67543483 ATTTTAAAATT
1 ATTTTAAAATT
67543494 ATTTT
1 ATTTT
67543499 TTAATATGAC
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
11 16 0.62
13 10 0.38
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (11 bp):
ATTTTAAAATT
Found at i:67543696 original size:14 final size:15
Alignment explanation
Indices: 67543666--67543703 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
67543656 GTTTGTCAGT
*
67543666 AAAAT-ATTTTTCGA
1 AAAATAATTTTTCAA
67543680 AAAATAATTTTT-AA
1 AAAATAATTTTTCAA
67543694 AAAATAATTT
1 AAAATAATTT
67543704 ACTTTTCTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 16 0.73
15 6 0.27
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.42
Consensus pattern (15 bp):
AAAATAATTTTTCAA
Found at i:67546271 original size:14 final size:14
Alignment explanation
Indices: 67546252--67546278 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
67546242 AGAAAAACCT
67546252 GAAAAGCTTTTACG
1 GAAAAGCTTTTACG
67546266 GAAAAGCTTTTAC
1 GAAAAGCTTTTAC
67546279 AAATTACCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.15, G:0.19, T:0.30
Consensus pattern (14 bp):
GAAAAGCTTTTACG
Found at i:67547499 original size:15 final size:15
Alignment explanation
Indices: 67547479--67547510 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
67547469 TTCCAATAAA
67547479 TCCAACTATATTCAT
1 TCCAACTATATTCAT
67547494 TCCAACTATATTCAT
1 TCCAACTATATTCAT
67547509 TC
1 TC
67547511 AAAAAATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.31, C:0.28, G:0.00, T:0.41
Consensus pattern (15 bp):
TCCAACTATATTCAT
Found at i:67548653 original size:24 final size:24
Alignment explanation
Indices: 67548621--67548671 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
67548611 ATTCCAATAT
67548621 GAAAGAATTGGTTTTTATACATTA
1 GAAAGAATTGGTTTTTATACATTA
67548645 GAAAGAATTGGTTTTTATACATTA
1 GAAAGAATTGGTTTTTATACATTA
67548669 GAA
1 GAA
67548672 TGAAAAATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.39, C:0.04, G:0.18, T:0.39
Consensus pattern (24 bp):
GAAAGAATTGGTTTTTATACATTA
Found at i:67553184 original size:14 final size:14
Alignment explanation
Indices: 67553165--67553194 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
67553155 TTTGAAAGGC
67553165 AAATATTTTAAAGA
1 AAATATTTTAAAGA
67553179 AAATATTTTAAAGA
1 AAATATTTTAAAGA
67553193 AA
1 AA
67553195 CAAATTTCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.60, C:0.00, G:0.07, T:0.33
Consensus pattern (14 bp):
AAATATTTTAAAGA
Found at i:67553354 original size:24 final size:24
Alignment explanation
Indices: 67553319--67553368 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
67553309 CTTTTACCTA
*
67553319 GCAGAGCCTATAGGCTACAAAAGG
1 GCAGAGCCTATAAGCTACAAAAGG
*
67553343 GCAGAGCTTATAAGCTACAAAAGG
1 GCAGAGCCTATAAGCTACAAAAGG
67553367 GC
1 GC
67553369 TTCTTAAGGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.20, G:0.28, T:0.14
Consensus pattern (24 bp):
GCAGAGCCTATAAGCTACAAAAGG
Found at i:67557665 original size:19 final size:19
Alignment explanation
Indices: 67557632--67557678 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
67557622 AGAATTTGGC
*
67557632 TGAGAAA-ATTATTTAATT
1 TGAGAAATAATATTTAATT
*
67557650 T-AGTAAATAATATTTATTT
1 TGAG-AAATAATATTTAATT
67557669 TGAGAAATAA
1 TGAGAAATAA
67557679 AAAAACATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
17 2 0.08
18 4 0.17
19 16 0.67
20 2 0.08
ACGTcount: A:0.47, C:0.00, G:0.11, T:0.43
Consensus pattern (19 bp):
TGAGAAATAATATTTAATT
Found at i:67560183 original size:12 final size:13
Alignment explanation
Indices: 67560161--67560189 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
67560151 TAAAAATAAA
67560161 AAAAATCAAAAAG
1 AAAAATCAAAAAG
67560174 AAAAAT-AAAAAG
1 AAAAATCAAAAAG
67560186 AAAA
1 AAAA
67560190 TAATACAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.83, C:0.03, G:0.07, T:0.07
Consensus pattern (13 bp):
AAAAATCAAAAAG
Found at i:67561427 original size:47 final size:47
Alignment explanation
Indices: 67561354--67561461 Score: 162
Period size: 47 Copynumber: 2.3 Consensus size: 47
67561344 ATCTGAACAT
* * * *
67561354 TTTTAATGTGTCATAAGTTTACTAATTGTGTCCTATTTAGTATAGCA
1 TTTTAATGTGTCTTAAGTCTACTAATTATGTCCTACTTAGTATAGCA
* *
67561401 TTTTAATGTGTCTTAAGTCTATTAATTATGTCTTACTTAGTATAGCA
1 TTTTAATGTGTCTTAAGTCTACTAATTATGTCCTACTTAGTATAGCA
67561448 TTTTAATGTGTCTT
1 TTTTAATGTGTCTT
67561462 TGTTCAGACA
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 55 1.00
ACGTcount: A:0.26, C:0.10, G:0.14, T:0.50
Consensus pattern (47 bp):
TTTTAATGTGTCTTAAGTCTACTAATTATGTCCTACTTAGTATAGCA
Found at i:67564933 original size:57 final size:57
Alignment explanation
Indices: 67564780--67564945 Score: 174
Period size: 57 Copynumber: 2.9 Consensus size: 57
67564770 AACACTAGTA
* * * *
67564780 AAAGGACAGCCTTTGTGGCAAAACTCT-GGAGAGGCAAACCTTTGTGGCAAACGTGTT
1 AAAGGACAACCTTTGTGGCAAAACTCTAGAAG-GGCAAGCCTTTGTGGCAAACATGTT
* * * * *
67564837 ATAGAACAACCTTTATGGAAAAACTCTAGAAAGGCAAGCCTTTGTGG-AGAACATGTT
1 AAAGGACAACCTTTGTGGCAAAACTCTAGAAGGGCAAGCCTTTGTGGCA-AACATGTT
* * * * *
67564894 AAAGGACAACTTTTGTGGCAAAACTTTAGAAGGGTAAGCCTTCGTGGTAAAC
1 AAAGGACAACCTTTGTGGCAAAACTCTAGAAGGGCAAGCCTTTGTGGCAAAC
67564946 CTTTTACTAG
Statistics
Matches: 88, Mismatches: 18, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
56 1 0.01
57 84 0.95
58 3 0.03
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.24
Consensus pattern (57 bp):
AAAGGACAACCTTTGTGGCAAAACTCTAGAAGGGCAAGCCTTTGTGGCAAACATGTT
Found at i:67564992 original size:28 final size:31
Alignment explanation
Indices: 67564960--67565026 Score: 79
Period size: 31 Copynumber: 2.3 Consensus size: 31
67564950 TACTAGACGT
67564960 CTTTGTGGTGAG-AC-T-ATG-AAAGGAAAGC
1 CTTTGTGGTGAGTACTTAATGAAAAGG-AAGC
* *
67564988 CTTTGTGATGAGTACTTAATGAAAAGGAAGT
1 CTTTGTGGTGAGTACTTAATGAAAAGGAAGC
67565019 CTTTGTGG
1 CTTTGTGG
67565027 CTATCTTTGA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
28 11 0.34
29 2 0.06
30 1 0.03
31 13 0.41
32 5 0.16
ACGTcount: A:0.30, C:0.09, G:0.30, T:0.31
Consensus pattern (31 bp):
CTTTGTGGTGAGTACTTAATGAAAAGGAAGC
Found at i:67565305 original size:20 final size:20
Alignment explanation
Indices: 67565280--67565319 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
67565270 TATTAAGTTC
67565280 AAGACCCAAGATCAAGTGGT
1 AAGACCCAAGATCAAGTGGT
67565300 AAGACCCAAGATCAAGTGGT
1 AAGACCCAAGATCAAGTGGT
67565320 TTTAGAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.20, G:0.25, T:0.15
Consensus pattern (20 bp):
AAGACCCAAGATCAAGTGGT
Found at i:67566675 original size:33 final size:33
Alignment explanation
Indices: 67566597--67566692 Score: 111
Period size: 33 Copynumber: 2.9 Consensus size: 33
67566587 GTTAGTGTGC
* * * *
67566597 TGGTTGGACTAGCTCTTATAAGCACTGGTGTGA
1 TGGTTGGATTAGCTCTTATGAGCATTGGTTTGA
* *
67566630 TGGTTGGATTAGCTTTTATGAGCATTGGTTTGT
1 TGGTTGGATTAGCTCTTATGAGCATTGGTTTGA
* * *
67566663 TGGTTGGGTTAGCTGTTCTGAGCATTGGTT
1 TGGTTGGATTAGCTCTTATGAGCATTGGTT
67566693 GCTGGAGGGA
Statistics
Matches: 54, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 54 1.00
ACGTcount: A:0.16, C:0.10, G:0.32, T:0.42
Consensus pattern (33 bp):
TGGTTGGATTAGCTCTTATGAGCATTGGTTTGA
Found at i:67573622 original size:12 final size:13
Alignment explanation
Indices: 67573586--67573623 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
67573576 AAATATTTGA
67573586 CTTGTTCTTAATT
1 CTTGTTCTTAATT
*
67573599 ATGTGTTCTTAATT
1 CT-TGTTCTTAATT
67573613 CTTG-TCTTAAT
1 CTTGTTCTTAAT
67573624 ATTTCAGGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 7 0.32
13 3 0.14
14 12 0.55
ACGTcount: A:0.18, C:0.13, G:0.11, T:0.58
Consensus pattern (13 bp):
CTTGTTCTTAATT
Found at i:67576436 original size:12 final size:12
Alignment explanation
Indices: 67576419--67576443 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
67576409 CTAGAGATTG
67576419 TAACTTCTTTTA
1 TAACTTCTTTTA
67576431 TAACTTCTTTTA
1 TAACTTCTTTTA
67576443 T
1 T
67576444 TAAATAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.16, G:0.00, T:0.60
Consensus pattern (12 bp):
TAACTTCTTTTA
Found at i:67598004 original size:15 final size:16
Alignment explanation
Indices: 67597970--67598004 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
67597960 ACAAAATATA
67597970 AGTTGTTCCAAACAAT
1 AGTTGTTCCAAACAAT
67597986 AGTTGTTCCAAAC-AT
1 AGTTGTTCCAAACAAT
67598001 AGTT
1 AGTT
67598005 ATTCTTGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 6 0.32
16 13 0.68
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.34
Consensus pattern (16 bp):
AGTTGTTCCAAACAAT
Found at i:67600724 original size:40 final size:41
Alignment explanation
Indices: 67600668--67600873 Score: 196
Period size: 40 Copynumber: 5.1 Consensus size: 41
67600658 CGGAATTTAA
* *
67600668 CCGGA-TATAGCT-ACTCGCTCAAATGCCTTCGGGACATAGC
1 CCGGATTATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
67600708 CTGG-TTATAGTAACTCGCACAAATGCCTTCAGGACTTAAC
1 CCGGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
67600748 CCGGATT-TAGTAACTCGCTCCAATGCCTTCGGG-CTTAGC
1 CCGGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
67600787 CCGGAATTAT--TAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGG-ATTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* ** * *
67600827 CCGGA-TATAGTCACTTAACACAAAAGCCTTTGGGACTTAGC
1 CCGGATTATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
67600868 CCGGAT
1 CCGGAT
67600874 ATCATTCGAA
Statistics
Matches: 135, Mismatches: 19, Indels: 22
0.77 0.11 0.12
Matches are distributed among these distances:
38 5 0.04
39 29 0.21
40 73 0.54
41 25 0.19
42 3 0.02
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.26
Consensus pattern (41 bp):
CCGGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:67600806 original size:79 final size:78
Alignment explanation
Indices: 67600654--67600836 Score: 214
Period size: 79 Copynumber: 2.3 Consensus size: 78
67600644 GAATCACATA
*
67600654 CCTTCGGAAT-TTAACCGGATATAGCTACTCGCTCAAATGCCTTCGGGACATAGCCTGGTTATAG
1 CCTTCGG-ATCTTAACCGGATATAGCTACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTATA-
67600718 TAACTCGCACAAATG
64 TAACTCGCACAAATG
* * *
67600733 CCTTCAGGA-CTTAACCCGGATTTAG-TAACTCGCTCCAATGCCTTCGGG-CTTAGCCCGGAATT
1 CCTTC-GGATCTTAA-CCGGATATAGCT-ACTCGCTCAAATGCCTTCGGGACATAGCCCGG--TT
67600795 AT-TAACTCGCACAAATG
61 ATATAACTCGCACAAATG
*
67600812 CCTTCGGATCTTAGTCCGGATATAG
1 CCTTCGGATCTTA-ACCGGATATAG
67600837 TCACTTAACA
Statistics
Matches: 90, Mismatches: 6, Indels: 16
0.80 0.05 0.14
Matches are distributed among these distances:
78 3 0.03
79 52 0.58
80 31 0.34
81 4 0.04
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (78 bp):
CCTTCGGATCTTAACCGGATATAGCTACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTATATA
ACTCGCACAAATG
Found at i:67608851 original size:39 final size:38
Alignment explanation
Indices: 67608808--67609027 Score: 194
Period size: 39 Copynumber: 5.6 Consensus size: 38
67608798 GAATCACATA
* *
67608808 CCTTCGGAATTTAACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGG-ACTTAACCGGATATAG-TAACTCGCACAAATG
* * *
67608847 CCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTC-GGACTTA-ACCGGATATAGTAACTCGCACAAATG
*
67608887 CCTTCGGACTTAACCCGGATTTAGTAACTCGCAC-AATG
1 CCTTCGGACTTAA-CCGGATATAGTAACTCGCACAAATG
* *
67608925 CCTTCGGGCTTAGCCCGGA-ATTAGTAACTCGCACAAATG
1 CCTTCGGACTTA-ACCGGATA-TAGTAACTCGCACAAATG
* * * *
67608964 CCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAAAG
1 CCTTCGGA-CTTA-ACCGGATATAGTAAC-TCGCACAAATG
*
67609005 CCTTCGGGACTTAGCCCGGATAT
1 CCTTC-GGACTTA-ACCGGATAT
67609028 CATTCGAATA
Statistics
Matches: 152, Mismatches: 18, Indels: 20
0.80 0.09 0.11
Matches are distributed among these distances:
38 33 0.22
39 44 0.29
40 44 0.29
41 28 0.18
42 3 0.02
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (38 bp):
CCTTCGGACTTAACCGGATATAGTAACTCGCACAAATG
Found at i:67609008 original size:41 final size:39
Alignment explanation
Indices: 67608822--67609027 Score: 247
Period size: 40 Copynumber: 5.2 Consensus size: 39
67608812 CGGAATTTAA
* *
67608822 CCGGATATAGCT-ACTCGCTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTC-GGACTTAGC
* *
67608862 CCGGTTATAGTAACTCGCACAAATGCCTTCGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGACTTAGC
* *
67608901 CCGGATTTAGTAACTCGCAC-AATGCCTTCGGGCTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGACTTAGC
*
67608939 CCGGA-ATTAGTAACTCGCACAAATGCCTTCGGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGA-CTTAGC
* * *
67608979 CCGGATATAGTCACTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTC-GGACTTAGC
67609020 CCGGATAT
1 CCGGATAT
67609028 CATTCGAATA
Statistics
Matches: 144, Mismatches: 15, Indels: 13
0.84 0.09 0.08
Matches are distributed among these distances:
38 34 0.24
39 37 0.26
40 42 0.29
41 28 0.19
42 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (39 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGACTTAGC
Found at i:67612638 original size:40 final size:40
Alignment explanation
Indices: 67612543--67612805 Score: 474
Period size: 40 Copynumber: 6.6 Consensus size: 40
67612533 AACACATTTA
* *
67612543 CCTTCGGGTCTTAACCCGGACATATCAACTCGCATAATTG
1 CCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTG
* *
67612583 -CTTCGGGTCTTAGCCCGGATATATCATCCCGCATAATTG
1 CCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTG
*
67612622 CCTTCGGGTCATAGCCCGGATATATCAACTCGCATAATTG
1 CCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTG
67612662 CCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTG
1 CCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTG
67612702 CCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTG
1 CCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTG
67612742 CCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTG
1 CCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTG
67612782 CCTTCGGGTCTTAGCCCGGATATA
1 CCTTCGGGTCTTAGCCCGGATATA
67612806 ATCCAATGTT
Statistics
Matches: 214, Mismatches: 8, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
39 35 0.16
40 179 0.84
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.29
Consensus pattern (40 bp):
CCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTG
Found at i:67621399 original size:40 final size:40
Alignment explanation
Indices: 67621354--67621617 Score: 474
Period size: 40 Copynumber: 6.6 Consensus size: 40
67621344 AACACATTTA
* *
67621354 CCTTCGGGTCTTAACCCGGACATATCAACTCGCATAATTG
1 CCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTG
* *
67621394 CCTTCGGGTCTTAGCCCGGATATATCATCCCGCATAATTG
1 CCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTG
*
67621434 CCTTCGGGTCATAGCCCGGATATATCAACTCGCATAATTG
1 CCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTG
67621474 CCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTG
1 CCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTG
*
67621514 CCTTCGGGTCTTAGCCCGGATATGTCAACTCGCATAATTG
1 CCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTG
67621554 CCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTG
1 CCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTG
67621594 CCTTCGGGTCTTAGCCCGGATATA
1 CCTTCGGGTCTTAGCCCGGATATA
67621618 ATCCAATGTT
Statistics
Matches: 214, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 214 1.00
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.29
Consensus pattern (40 bp):
CCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTG
Done.