Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 198 of 295
Found at i:67624347 original size:90 final size:90
Alignment explanation
Indices: 67624189--67624491 Score: 386
Period size: 90 Copynumber: 3.4 Consensus size: 90
67624179 AATTTATATT
* * *
67624189 TTTC-AAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGATGAGGTAC
1 TTTCAAAAAAG-ACCAACTCATATTGAGAGAGGTGAGTTGAGCCTCGGGTCACATGATGAGGTAT
67624253 TTTCAAAATCTACTTTTCAAATTAAG
65 TTTCAAAATCTACTTTTCAAATTAAG
* * * *
67624279 TTTCAAAAAAGACCAACTCATATTGAGAGAGGTGAGTTGAGCCTTGGTTCACGTGCTGAGGTATT
1 TTTCAAAAAAGACCAACTCATATTGAGAGAGGTGAGTTGAGCCTCGGGTCACATGATGAGGTATT
* *
67624344 TTC--AAT-T-C-TTTCAATTTATATT
66 TTCAAAATCTACTTTTCAAATTA-A-G
* * *
67624366 TTTCAAAAAAAATCAACACATATT-ATGAGAGGTGAGTTGAGCCTCGGGTCACATGATGAGGTAT
1 TTTCAAAAAAGACCAACTCATATTGA-GAGAGGTGAGTTGAGCCTCGGGTCACATGATGAGGTAT
67624430 TTTCAAAATCTACTTTTCAAATTAAG
65 TTTCAAAATCTACTTTTCAAATTAAG
* * *
67624456 TTTCAAAAAGGACCAACTCATATTGCGAGAGTTGAG
1 TTTCAAAAAAGACCAACTCATATTGAGAGAGGTGAG
67624492 CTCAGGATCG
Statistics
Matches: 179, Mismatches: 24, Indels: 20
0.80 0.11 0.09
Matches are distributed among these distances:
85 9 0.05
86 3 0.02
87 60 0.34
88 3 0.02
89 3 0.02
90 84 0.47
91 8 0.04
92 9 0.05
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.32
Consensus pattern (90 bp):
TTTCAAAAAAGACCAACTCATATTGAGAGAGGTGAGTTGAGCCTCGGGTCACATGATGAGGTATT
TTCAAAATCTACTTTTCAAATTAAG
Found at i:67625594 original size:642 final size:642
Alignment explanation
Indices: 67624356--67626421 Score: 3661
Period size: 642 Copynumber: 3.2 Consensus size: 642
67624346 CAATTCTTTC
* * **
67624356 AATTTATATTTTTCAAAAAAAATCAACACATATTATGAGAGGTGAGTTGAGCCTCGGGTCACATG
1 AATTTATATTTGTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATG
*
67624421 ATGAGGTATTTTCAAAATCTACTTTTCAAATTAAGTTTCAAAAAGGACCAACTCATATTGCGAGA
66 ATGAGGTATTTTCAAAATCTACTTTTCAAATTAAGTTTCAAAAAAGACCAACTCATATTGCGAGA
*
67624486 GTTGAGCTCAGGATCGTATGCCGAGCAAAGAGTAAAGATTAGACCTGATCGAAGACACTAGATTT
131 GTTGAGCTCAGGATCGCATGCCGAGCAAAGAGTAAAGATTAGACCTGATCGAAGACACTAGATTT
*
67624551 GGCCTCCCTGAAGTTGCAGTGGGGCAGGTCAAAGTTGCAAGTCTTGTCCCTCTGAAGTTGCAGTG
196 GGCCTCCCTGAAGTTGCAGTGGGGCAGGTCAAAGTTGCAAGTCTTGTCTCTCTGAAGTTGCAGTG
67624616 GAGCTGATGAGGATATCAGATCTTGCCTTTCTAAGTTACAGAAGAGAAGACCACAAACCTTATCT
261 GAGCTGATGAGGATATCAGATCTTGCCTTTCTAAGTTACAGAAGAGAAGACCACAAACCTTATCT
*
67624681 CACTAAAGTGATAGAAGAGCAAATTGAAGTTATAGATCTTATCTTTCTGAAGTTACAGTGAAGTA
326 CACTAAAGCGATAGAAGAGCAAATTGAAGTTATAGATCTTATCTTTCTGAAGTTACAGTGAAGTA
67624746 GATCGAAGCCACAAATCTCATATCCTTGAAGTTACATTGGAGAAGAGTGAAGCAACGAGGAATAC
391 GATCGAAGCCACAAATCTCATATCCTTGAAGTTACATTGGAGAAGAGTGAAGCAACGAGGAATAC
*
67624811 ATCAGAAGATGCAATGGATTGAACCAGAGCTACAAGATGTGATGGACTAGAAAAAGACTACTTGG
456 ATCAGAAGATGCAATGGATTGAACCAGAGCTACAAGATGTGATGGACTGGAAAAAGACTACTTGG
*
67624876 AAAAGAGGAGCTCCAAAGCAAGTCAAGACCGAGCAAGACCGGGTAAATTTGGCCTTTCTTTGTGT
521 AAAAGAGGAGCTCCAAAGCAAGTCAAGACC-AGCAAGACCGGGCAAATTTGGCCTTTCTTTGTGT
*
67624941 CTTTGCTCTATTCCCATTTTACGATAATGAGCAAAGAGGGGCACGCTGAGGTATTTTA
585 CTTTGCTCTATTCCCATTATACGATAATGAGCAAAGAGGGGCACGCTGAGGTATTTTA
67624999 AATTTATATTTGTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATG
1 AATTTATATTTGTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATG
*
67625063 ATGAGGTATTTTCAAAATCTACTTTTCAAATTAAGTTTCAAAAAAGACCAACTCATATTGCTAGA
66 ATGAGGTATTTTCAAAATCTACTTTTCAAATTAAGTTTCAAAAAAGACCAACTCATATTGCGAGA
*
67625128 GTTGAGCTCAGGATCGCATGCCGAGCAAAGATTAAAGATTAGACCTGATCGAAGACACTAGATTT
131 GTTGAGCTCAGGATCGCATGCCGAGCAAAGAGTAAAGATTAGACCTGATCGAAGACACTAGATTT
* *
67625193 GGCCTCCCTAAAGTTGCAGTGGGGCAGGTCAAAGTTACAAGTCTTGTCTCTCTGAAGTTGCAGTG
196 GGCCTCCCTGAAGTTGCAGTGGGGCAGGTCAAAGTTGCAAGTCTTGTCTCTCTGAAGTTGCAGTG
67625258 GAGCTGATGAGGATATCAGATCTTGCCTTTCTAAGTTACAGAAGAGAAGACCACAAACCTTATCT
261 GAGCTGATGAGGATATCAGATCTTGCCTTTCTAAGTTACAGAAGAGAAGACCACAAACCTTATCT
67625323 CACTAAAGCGATAGAAGAGCAAATTGAAGTTATAGATCTTATCTTTCTGAAGTTACAGTGAAGTA
326 CACTAAAGCGATAGAAGAGCAAATTGAAGTTATAGATCTTATCTTTCTGAAGTTACAGTGAAGTA
67625388 GATCGAAGCCACAAATCTCATATCCTTGAAGTTACATTGGAGAAGAGTGAAGCAACGAGGAATAC
391 GATCGAAGCCACAAATCTCATATCCTTGAAGTTACATTGGAGAAGAGTGAAGCAACGAGGAATAC
*
67625453 ATCAGAAGATGCAATGGATTGAACTAGAGCTACAAGATGTGATGGACTGGAAAAAGACTACTTGG
456 ATCAGAAGATGCAATGGATTGAACCAGAGCTACAAGATGTGATGGACTGGAAAAAGACTACTTGG
*
67625518 AAAAGAGGAGCTCCAAAGCAAGTCAAGACACAGCAAGACCGGGCAAATTTGGCCTTTCGTTGTGT
521 AAAAGAGGAGCTCCAAAGCAAGTCAAGAC-CAGCAAGACCGGGCAAATTTGGCCTTTCTTTGTGT
*
67625583 CTTTGCTCTATTCCCATTATACGATAATGAGCAAAGAGGAGCACGCTGAGGTATTTTA
585 CTTTGCTCTATTCCCATTATACGATAATGAGCAAAGAGGGGCACGCTGAGGTATTTTA
*
67625641 AATTGATATTTGTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATG
1 AATTTATATTTGTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATG
67625706 ATGAGGTATTTTCAAAATCTACTTTTCAAATTAAGTTTCAAAAAAGACCAACTCATATTGCGAGA
66 ATGAGGTATTTTCAAAATCTACTTTTCAAATTAAGTTTCAAAAAAGACCAACTCATATTGCGAGA
* * * *
67625771 GTTGAGCTCAGGATCGCATGCCGAGTAAAGAGTAAAGATTGGAGCTGATGGAAGACACTAGATTT
131 GTTGAGCTCAGGATCGCATGCCGAGCAAAGAGTAAAGATTAGACCTGATCGAAGACACTAGATTT
* * *
67625836 GGCCTCCCTGAAGTTGCAATGGGGGCAGGTCAAAGTTGCAAGTCTTGTCTCCCTAAAGTTGCAGT
196 GGCCTCCCTGAAGTTGCAGT-GGGGCAGGTCAAAGTTGCAAGTCTTGTCTCTCTGAAGTTGCAGT
67625901 GGAGCTGATCGAGGATATCAGATCTTGCCTTTCTAAGTTACAGAAGAGAAGACCACAAACCTTAT
260 GGAGCTGAT-GAGGATATCAGATCTTGCCTTTCTAAGTTACAGAAGAGAAGACCACAAACCTTAT
*
67625966 CTCACTAAAGCGATAGAAGAGCAGATTGAAGTTATAGATCTTATCTTTCTGAAGTTACAGTGAAG
324 CTCACTAAAGCGATAGAAGAGCAAATTGAAGTTATAGATCTTATCTTTCTGAAGTTACAGTGAAG
* * *
67626031 CAGATCGAAGCCACAAATCTCATATCCTTGAAGTTACATTGGAGTAGAGTGAAGCTACGAGGAAT
389 TAGATCGAAGCCACAAATCTCATATCCTTGAAGTTACATTGGAGAAGAGTGAAGCAACGAGGAAT
* *
67626096 ACATCAGAAGATG-AAGTGGATTGAACCAGAGCTACAAGATGCGGTGGACTGGAAAAAGACTACT
454 ACATCAGAAGATGCAA-TGGATTGAACCAGAGCTACAAGATGTGATGGACTGGAAAAAGACTACT
*
67626160 TGGAAAAGAGAAGCTCCAAAGCAAGTCAAGACCCAGCAAGACCGGGCAAATTTGGCCTTTCTTTG
518 TGGAAAAGAGGAGCTCCAAAGCAAGTCAAGA-CCAGCAAGACCGGGCAAATTTGGCCTTTCTTTG
* * * *
67626225 TGTCTTTGCTCTATTCCCATTGTACGACACTGCA-CAAAGAGGGGCACGCTGAGGTATTTTC
582 TGTCTTTGCTCTATTCCCATTATACGATAATG-AGCAAAGAGGGGCACGCTGAGGTATTTTA
* * *
67626286 AATTTATATTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCGGGTTACATG
1 AATTTATATTTGTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATG
* *
67626351 ATGAGGTACTTTCAAAATCTACTTTTCAAATTAAGTTTAAAAAAAGACCAACTCATATTGCGAGA
66 ATGAGGTATTTTCAAAATCTACTTTTCAAATTAAGTTTCAAAAAAGACCAACTCATATTGCGAGA
*
67626416 GGTGAG
131 GTTGAG
67626422 TTGAGCCTTG
Statistics
Matches: 1365, Mismatches: 51, Indels: 12
0.96 0.04 0.01
Matches are distributed among these distances:
642 622 0.46
643 206 0.15
644 52 0.04
645 483 0.35
646 2 0.00
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.26
Consensus pattern (642 bp):
AATTTATATTTGTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATG
ATGAGGTATTTTCAAAATCTACTTTTCAAATTAAGTTTCAAAAAAGACCAACTCATATTGCGAGA
GTTGAGCTCAGGATCGCATGCCGAGCAAAGAGTAAAGATTAGACCTGATCGAAGACACTAGATTT
GGCCTCCCTGAAGTTGCAGTGGGGCAGGTCAAAGTTGCAAGTCTTGTCTCTCTGAAGTTGCAGTG
GAGCTGATGAGGATATCAGATCTTGCCTTTCTAAGTTACAGAAGAGAAGACCACAAACCTTATCT
CACTAAAGCGATAGAAGAGCAAATTGAAGTTATAGATCTTATCTTTCTGAAGTTACAGTGAAGTA
GATCGAAGCCACAAATCTCATATCCTTGAAGTTACATTGGAGAAGAGTGAAGCAACGAGGAATAC
ATCAGAAGATGCAATGGATTGAACCAGAGCTACAAGATGTGATGGACTGGAAAAAGACTACTTGG
AAAAGAGGAGCTCCAAAGCAAGTCAAGACCAGCAAGACCGGGCAAATTTGGCCTTTCTTTGTGTC
TTTGCTCTATTCCCATTATACGATAATGAGCAAAGAGGGGCACGCTGAGGTATTTTA
Found at i:67626454 original size:90 final size:87
Alignment explanation
Indices: 67626282--67626537 Score: 297
Period size: 87 Copynumber: 2.9 Consensus size: 87
67626272 GCTGAGGTAT
* *
67626282 TTTCAATTTATATTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTCGGGTT
1 TTTCAAATTATATGTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT--GGTT
*
67626346 -ACATGATGAGGTACTTTCAAAATCTAC
64 CACATGATGAGGTATTTTC--AAT-T-C
*
67626373 TTTTCAAATTA-A-GTTT-AAAAAAAGACCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGTT
1 -TTTCAAATTATATGTTTCAAAAAAA-ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGTT
* *
67626435 CACGTGTTGAGGTATTTTCAATTC
64 CACATGATGAGGTATTTTCAATTC
* * * * * *
67626459 TTTCAATTTATATTTTTCAAAAAAAATCAACCCATATTGCAAGAGGTGAGTTGAGCCTCGGGTCA
1 TTTCAAATTATATGTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGTTCA
67626524 CATGATGAGGTATT
66 CATGATGAGGTATT
67626538 ATGAGAGGTG
Statistics
Matches: 143, Mismatches: 15, Indels: 17
0.82 0.09 0.10
Matches are distributed among these distances:
85 9 0.06
86 2 0.01
87 51 0.36
88 10 0.07
89 11 0.08
90 47 0.33
91 4 0.03
92 9 0.06
ACGTcount: A:0.32, C:0.14, G:0.19, T:0.34
Consensus pattern (87 bp):
TTTCAAATTATATGTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGTTCA
CATGATGAGGTATTTTCAATTC
Found at i:67626533 original size:87 final size:91
Alignment explanation
Indices: 67626281--67626537 Score: 339
Period size: 90 Copynumber: 2.9 Consensus size: 91
67626271 CGCTGAGGTA
* *
67626281 TTTTCAATTTATATTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCGGGTT
1 TTTTCAATTTATATTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTC
*
67626346 ACATGATGAGGTACTTTCAAAATCTAC
66 ACATGATGAGGTATTTTC-AAATCTAC
* * * * *
67626373 TTTTCAAATTA-A-GTTT-AAAAAAAGACCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGTT
1 TTTTCAATTTATATTTTTCAAAAAAA-ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGT
* *
67626435 CACGTGTTGAGGTATTTTC-AAT-T-C
65 CACATGATGAGGTATTTTCAAATCTAC
* *
67626459 -TTTCAATTTATATTTTTCAAAAAAAATCAACCCATATTGCAAGAGGTGAGTTGAGCCTCGGGTC
1 TTTTCAATTTATATTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTC
67626523 ACATGATGAGGTATT
66 ACATGATGAGGTATT
67626538 ATGAGAGGTG
Statistics
Matches: 142, Mismatches: 19, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
85 9 0.06
86 2 0.01
87 51 0.36
88 10 0.07
89 7 0.05
90 52 0.37
91 1 0.01
92 10 0.07
ACGTcount: A:0.32, C:0.14, G:0.19, T:0.35
Consensus pattern (91 bp):
TTTTCAATTTATATTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTC
ACATGATGAGGTATTTTCAAATCTAC
Found at i:67626557 original size:41 final size:41
Alignment explanation
Indices: 67626500--67626578 Score: 158
Period size: 41 Copynumber: 1.9 Consensus size: 41
67626490 CCATATTGCA
67626500 AGAGGTGAGTTGAGCCTCGGGTCACATGATGAGGTATTATG
1 AGAGGTGAGTTGAGCCTCGGGTCACATGATGAGGTATTATG
67626541 AGAGGTGAGTTGAGCCTCGGGTCACATGATGAGGTATT
1 AGAGGTGAGTTGAGCCTCGGGTCACATGATGAGGTATT
67626579 TTCAAAATCT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.24, C:0.13, G:0.37, T:0.27
Consensus pattern (41 bp):
AGAGGTGAGTTGAGCCTCGGGTCACATGATGAGGTATTATG
Found at i:67627771 original size:645 final size:643
Alignment explanation
Indices: 67626540--67627926 Score: 2467
Period size: 645 Copynumber: 2.2 Consensus size: 643
67626530 GAGGTATTAT
67626540 GAGAGGTGAGTTGAGCCTCGGGTCACATGATGAGGTATTTTCAAAATCTACTTTTCAAATTAAGT
1 GAGAGGTGAGTTGAGCCTCGGGTCACATGATGAGGTATTTTCAAAATCTACTTTTCAAATTAAGT
*
67626605 TTCAAAAAGGACCAACTCATATTGCGAGAGTTGAGCTCAGGATCGCATGCCGAGCAAAGAGTAAA
66 TTCAAAAAAGACCAACTCATATTGCGAGAGTTGAGCTCAGGATCGCATGCCGAGCAAAGAGTAAA
67626670 GATTGGACCTGATCGAAGACACTAGATTTGGCCTCCCTGAAGTTGCAGTGGGGCAGGTCAAAGTT
131 GATTGGACCTGATCGAAGACACTAGATTTGGCCTCCCTGAAGTTGCAGTGGGGCAGGTCAAAGTT
* * * *
67626735 GCAAGTCTTGTCTCTCTGAAGTTGCAGTGGAGCTGATGAGGATATCAAGTCTTGCCTTTCTTAGT
196 GCAAGTCTTGTCTCCCTCAAGTTGCAGTGGAGCTGATAAGGATATCAAGTCTTGCCTTTCTAAGT
* * *
67626800 TACAGAAGAGAAGGCCACAAACCTTATCTCACTAAAGCGATAGAAGAGCAGATTGAAGTTATAGA
261 TACAGAAGACAAGACCACAAACCTTATCTCACTAAAGCGATAAAAGAGCAGATTGAAGTTATAGA
*
67626865 TCTTATCTTTCTGAAGTTACAGTGAAGTAGATCGAAGCCACAAATCTCATATCCTTGAAGTTACA
326 TCTTATCTTTCTGAAGTTACAGTGAAGCAGATCGAAGCCACAAATCTCATATCCTTGAAGTTACA
67626930 TTGGAGTAGAGTGAAGCAACGAGGAATACATCAGAAGATGCAATGGATTGAACCAGAGCTACAAG
391 TTGGAGTAGAGTGAAGCAACGAGGAATACATCAGAAGATGCAATGGATTGAACCAGAGCTACAAG
* *
67626995 ATGTGATGGACTCGAAAAACACTACTTGGAAAAGAGGAGCTCCAAAGCAAGTCAAGACCCAGCAA
456 ATGTGATGGACTCGAAAAACACTACTTGGAAAAGAGAAGCTCCAAAGCAAGTCAAAACCCAGCAA
* *
67627060 GACCGGGCAAATTTGGCCTTTCTTTGTGTCTTTGCTCTATTCCCATTATACGATAATGAGCAAAG
521 GACCGGGCAAATTTGGCCTTTCTTTGTGACTTTGCTCTATTCCCATTATACGACAATGAGCAAAG
67627125 AGGGGCATGCTGAGGTATTTTAAATTTATATTTGTCAAAAAAAATCAACTCATATTGC
586 AGGGGCATGCTGAGGTATTTTAAATTTATATTTGTCAAAAAAAATCAACTCATATTGC
67627183 GAGAGGTGAGTTGAGCCTCGGGTCACATGATGAGGTATTTTCAAAATCTACTTTTCAAATTAAGT
1 GAGAGGTGAGTTGAGCCTCGGGTCACATGATGAGGTATTTTCAAAATCTACTTTTCAAATTAAGT
67627248 TTCAAAAAAGACCAACTCATATTGCGAGAGTTGAGCTCAGGATCGCATGCCGAGCAAAGAGTAAA
66 TTCAAAAAAGACCAACTCATATTGCGAGAGTTGAGCTCAGGATCGCATGCCGAGCAAAGAGTAAA
* *
67627313 GATTGGAGCTGATGGAAGACACTAGATTTGGCCTCCCTGAAGTTGCAGTGGGGGCAGGTCAAAGT
131 GATTGGACCTGATCGAAGACACTAGATTTGGCCTCCCTGAAGTTGCAGT-GGGGCAGGTCAAAGT
67627378 TGCAAGTCTTGTCTCCCTCAAGTTGCAGTGGAGCTGATCAAGGATATC-AGATCTTGCCTTTCTA
195 TGCAAGTCTTGTCTCCCTCAAGTTGCAGTGGAGCTGAT-AAGGATATCAAG-TCTTGCCTTTCTA
67627442 AGTTACAGAAGACAAGACCACAAACCTTATCTCACTAAAGCGATAAAAGAGCAGATTGAAGTTAT
258 AGTTACAGAAGACAAGACCACAAACCTTATCTCACTAAAGCGATAAAAGAGCAGATTGAAGTTAT
67627507 AGATCTTATCTTTCTGAAGTTACAGTGAAGCAGATCGAAGCCACAAATCTCATATCCTTGAAGTT
323 AGATCTTATCTTTCTGAAGTTACAGTGAAGCAGATCGAAGCCACAAATCTCATATCCTTGAAGTT
*
67627572 ACATTGGAGTAGAGTGAAGCTACGAGGAATACATCAGAAGATG-AAGTGGATTGAACCAGAGCTA
388 ACATTGGAGTAGAGTGAAGCAACGAGGAATACATCAGAAGATGCAA-TGGATTGAACCAGAGCTA
* * *
67627636 CAAGATGTGGTGGACTGGAAAAAGACTACTTGGAAAAGAGAAGCTCCAAAGCAAGTCAAAACCCA
452 CAAGATGTGATGGACTCGAAAAACACTACTTGGAAAAGAGAAGCTCCAAAGCAAGTCAAAACCCA
*
67627701 GCAAGACCGGGCAAATTTGGCCTTTCTTTGTGACTTTGCTCTATTCCCATTATACGACACTGCA-
517 GCAAGACCGGGCAAATTTGGCCTTTCTTTGTGACTTTGCTCTATTCCCATTATACGACAATG-AG
* * *
67627765 CAAAGAGGGGCATGCTGAGGTATTTTCAATTTATATTTTTCAAAAAATATCAACTCATATTGC
581 CAAAGAGGGGCATGCTGAGGTATTTTAAATTTATATTTGTCAAAAAAAATCAACTCATATTGC
* *
67627828 GAGAGGTGAGTTGAGCCTCGGGTCACATGATGAGGTACTTTCAAAATCTTC-TTTCAAATTAAGT
1 GAGAGGTGAGTTGAGCCTCGGGTCACATGATGAGGTATTTTCAAAATCTACTTTTCAAATTAAGT
*
67627892 TTCAAAAAAGACCAACTCATATTGCGAGAGGTGAG
66 TTCAAAAAAGACCAACTCATATTGCGAGAGTTGAG
67627927 TTTAGCCTTG
Statistics
Matches: 713, Mismatches: 26, Indels: 9
0.95 0.03 0.01
Matches are distributed among these distances:
643 176 0.25
644 102 0.14
645 434 0.61
646 1 0.00
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (643 bp):
GAGAGGTGAGTTGAGCCTCGGGTCACATGATGAGGTATTTTCAAAATCTACTTTTCAAATTAAGT
TTCAAAAAAGACCAACTCATATTGCGAGAGTTGAGCTCAGGATCGCATGCCGAGCAAAGAGTAAA
GATTGGACCTGATCGAAGACACTAGATTTGGCCTCCCTGAAGTTGCAGTGGGGCAGGTCAAAGTT
GCAAGTCTTGTCTCCCTCAAGTTGCAGTGGAGCTGATAAGGATATCAAGTCTTGCCTTTCTAAGT
TACAGAAGACAAGACCACAAACCTTATCTCACTAAAGCGATAAAAGAGCAGATTGAAGTTATAGA
TCTTATCTTTCTGAAGTTACAGTGAAGCAGATCGAAGCCACAAATCTCATATCCTTGAAGTTACA
TTGGAGTAGAGTGAAGCAACGAGGAATACATCAGAAGATGCAATGGATTGAACCAGAGCTACAAG
ATGTGATGGACTCGAAAAACACTACTTGGAAAAGAGAAGCTCCAAAGCAAGTCAAAACCCAGCAA
GACCGGGCAAATTTGGCCTTTCTTTGTGACTTTGCTCTATTCCCATTATACGACAATGAGCAAAG
AGGGGCATGCTGAGGTATTTTAAATTTATATTTGTCAAAAAAAATCAACTCATATTGC
Found at i:67627953 original size:89 final size:89
Alignment explanation
Indices: 67627802--67628103 Score: 389
Period size: 89 Copynumber: 3.4 Consensus size: 89
67627792 AATTTATATT
* * *
67627802 TTTCAAAAAATATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGATGAGGTACT
1 TTTCAAAAAATACCAACTCATATTGCGAGAGGTGAGTTTAGCCTCGGGTCACATGATGAGGTATT
67627867 TTCAAAATCTTCTTTCAAATTAAG
66 TTCAAAATCTTCTTTCAAATTAAG
* * * * *
67627891 TTTCAAAAAAGACCAACTCATATTGCGAGAGGTGAGTTTAGCCTTGGTTCACGTGCTGAGGTATT
1 TTTCAAAAAATACCAACTCATATTGCGAGAGGTGAGTTTAGCCTCGGGTCACATGATGAGGTATT
* *
67627956 TTC--AA--TTCTTTCAATTTATATT
66 TTCAAAATCTTCTTTCAAATTA-A-G
* * * *
67627978 TTTCAAAAAAAATCAACCCATATTGCAAGAGGTGA-TTTGAGCCTCGGGTCACATGATGAGGTAT
1 TTTCAAAAAATACCAACTCATATTGCGAGAGGTGAGTTT-AGCCTCGGGTCACATGATGAGGTAT
*
67628042 TTTCAAAATCTACTTTTCAAATTAAG
65 TTTCAAAATCTTC-TTTCAAATTAAG
*
67628068 TTTCAAAAAATACCAACTCATATTGCGAGAGTTGAG
1 TTTCAAAAAATACCAACTCATATTGCGAGAGGTGAG
67628104 CTCAGGATCG
Statistics
Matches: 178, Mismatches: 26, Indels: 16
0.81 0.12 0.07
Matches are distributed among these distances:
85 12 0.07
86 4 0.02
87 58 0.33
89 62 0.35
90 30 0.17
91 3 0.02
92 9 0.05
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.33
Consensus pattern (89 bp):
TTTCAAAAAATACCAACTCATATTGCGAGAGGTGAGTTTAGCCTCGGGTCACATGATGAGGTATT
TTCAAAATCTTCTTTCAAATTAAG
Found at i:67628781 original size:90 final size:90
Alignment explanation
Indices: 67628623--67628915 Score: 407
Period size: 90 Copynumber: 3.3 Consensus size: 90
67628613 AATTTATATT
* * *
67628623 TTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGATGAGGTACT
1 TTTCAAAAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGGTTCACATGATGAGGTATT
67628688 TTCAAAATCTACTTTTCAAATTAAG
66 TTCAAAATCTACTTTTCAAATTAAG
* * * *
67628713 TTTCAAAAAAGACCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGTTCACGTGCTGAGGTATT
1 TTTCAAAAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGGTTCACATGATGAGGTATT
* * *
67628778 TTC--AAT-T-C-TTTGAATTTATATT
66 TTCAAAATCTACTTTTCAAATTA-A-G
* *
67628800 TTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGGGTCACATGATGAGGTAT
1 TTTC-AAAAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGGTTCACATGATGAGGTAT
67628865 TTTCAAAATCTACTTTTCAAATTAAG
65 TTTCAAAATCTACTTTTCAAATTAAG
*
67628891 TTTCAAAAAAGACCAACTCATATTG
1 TTTCAAAAAAAACCAACTCATATTG
67628916 TGTGAGTTGA
Statistics
Matches: 175, Mismatches: 20, Indels: 16
0.83 0.09 0.08
Matches are distributed among these distances:
85 8 0.05
86 2 0.01
87 5 0.03
88 61 0.35
90 84 0.48
91 5 0.03
92 2 0.01
93 8 0.05
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32
Consensus pattern (90 bp):
TTTCAAAAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGGTTCACATGATGAGGTATT
TTCAAAATCTACTTTTCAAATTAAG
Found at i:67629087 original size:823 final size:821
Alignment explanation
Indices: 67627147--67631923 Score: 8104
Period size: 821 Copynumber: 5.8 Consensus size: 821
67627137 AGGTATTTTA
*
67627147 AATTTATATTTGTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATG
1 AATTTATATTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATG
67627212 ATGAGGTATTTTCAAAATCTACTTTTCAAATTAAGTTTCAAAAAAGACCAACTCATATTGCGAGA
66 ATGAGGTATTTTCAAAATCTACTTTTCAAATTAAGTTTCAAAAAAGACCAACTCATATTGCGAGA
67627277 GTTGAGCTCAGGATCGCATGCCGAGCAAAGAGTAAAGATTGGAGCTGATGGAAGACACTAGATTT
131 GTTGAGCTCAGGATCGCATGCCGAGCAAAGAGTAAAGATTGGAGCTGATGGAAGACACTAGATTT
* *
67627342 GGCCTCCCTGAAGTTGCAGTGGGGGCAGGTCAAAGTTGCAAGTCTTGTCTCCCTCAAGTTGCAGT
196 GGCCTCCCTGAAGTTGCAGT-GGGGCAGGTCAAAGTTGCAAGTCTTGTCTCCCTGAAGTTACAGT
* * *
67627407 GGAGCTGATCAAGGATATCAGATCTTGCCTTTCTAAGTTACAGAAGACAAGACCACAAACCTTAT
260 GGAGCTGATCGATGATATCAGATCTTGCCTTTCTAAGTTACAGAAGAGAAGACCACAAACCTTAT
*
67627472 CTCACTAAAGCGATAAAAGAGCAGATTGAAGTTATAGATCTTATCTTTCTGAAGTTACAGTGAAG
325 CTCACTAAAGCGATAGAAGAGCAGATTGAAGTTATAGATCTTATCTTTCTGAAGTTACAGTGAAG
67627537 CAGATCGAAGCCACAAATCTCATATCCTTGAAGTTACATTGGAGTAGAGTGAAGCTACGAGGAAT
390 CAGATCGAAGCCACAAATCTCATATCCTTGAAGTTACATTGGAGTAGAGTGAAGCTACGAGGAAT
* * *
67627602 ACATCAGAAGATGAAGTGGATTGAACCAGAGCTACAAGATGTGGTGGACTGGAAAAAGACTACTT
455 ACATCAGAAGATGCAGTGGATTGAACCAGAGCTACAAGATGCGATGGACTGGAAAAAGACTACTT
*
67627667 GGAAAAGAGAAGCTCCAAAGCAAGTCAAAACCCAGCAAGACCGGGCAAATTTGGCCTTTCTTTGT
520 GGAAAAGAGAAGCTCCAAAGCAAGTCAAGACCCAGCAAGACCGGGCAAATTTGGCCTTTCTTTGT
*
67627732 GACTTTGCTCTATTCCCATTATACGACACTGCACAAAGAGGGGCATGCTGAGGTATTTTCAATTT
585 GACTTTGCTCTATTCCCATTATACGACACTGCACAAAGAGGGGCACGCTGAGGTATTTTCAATTT
*
67627797 ATATTTTTCAAAAAATATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGATGAG
650 ATATTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGATGAG
*
67627862 GTACTTTCAAAATCTTC-TTTCAAATTAAGTTTCAAAAAAGACCAACTCATATTGCGAGAGGTGA
715 GTACTTTCAAAATCTACTTTTCAAATTAAGTTTCAAAAAAGACCAACTCATATTGCGAGAGGTGA
*
67627926 GTTTAGCCTTGGTTCACGTGCTGAGGTATTTTCAATTCTTTC
780 GTTGAGCCTTGGTTCACGTGCTGAGGTATTTTCAATTCTTTC
* * *
67627968 AATTTATATTTTTCAAAAAAAATCAACCCATATTGCAAGAGGTGATTTGAGCCTCGGGTCACATG
1 AATTTATATTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATG
*
67628033 ATGAGGTATTTTCAAAATCTACTTTTCAAATTAAGTTTCAAAAAATACCAACTCATATTGCGAGA
66 ATGAGGTATTTTCAAAATCTACTTTTCAAATTAAGTTTCAAAAAAGACCAACTCATATTGCGAGA
* *
67628098 GTTGAGCTCAGGATCGCTTGTCGAGCAAAGAGTAAAGATTGGAGCTGATGGAAGACACTAGATTT
131 GTTGAGCTCAGGATCGCATGCCGAGCAAAGAGTAAAGATTGGAGCTGATGGAAGACACTAGATTT
67628163 GGCCTCCCTGAAGTTGCAGTGGGGCAGGTCAAAGTTGCAAGTCTTGTCTCCCTGAAGTTACAGTG
196 GGCCTCCCTGAAGTTGCAGTGGGGCAGGTCAAAGTTGCAAGTCTTGTCTCCCTGAAGTTACAGTG
*
67628228 GAGCTGATCGATGATATCAGATCTTGCCTTTCTAAGTTACTGAAGAGAAGACCACAAACCTTATC
261 GAGCTGATCGATGATATCAGATCTTGCCTTTCTAAGTTACAGAAGAGAAGACCACAAACCTTATC
* *
67628293 TTACTAAAGTGATAGAAGAGCAGATTGAAGTTATAGATCTTATCTTTCTGAAGTTACAGTGAAGC
326 TCACTAAAGCGATAGAAGAGCAGATTGAAGTTATAGATCTTATCTTTCTGAAGTTACAGTGAAGC
67628358 AGATCGAAGCCACAAATCTCATATCCTTGAAGTTACATTGGAGTAGAGTGAAGCTACGAGGAATA
391 AGATCGAAGCCACAAATCTCATATCCTTGAAGTTACATTGGAGTAGAGTGAAGCTACGAGGAATA
* *
67628423 CATCAGAAGATGTAGTGGATTGAACCAGAGCTACAAGATGCGGTGGACTGGAAAAAGACTACTTG
456 CATCAGAAGATGCAGTGGATTGAACCAGAGCTACAAGATGCGATGGACTGGAAAAAGACTACTTG
67628488 GAAAAGAGAAGCTCCAAAGCAAGTCAAGACCCAGCAAGACCGGGCAAATTTGGCCTTTCTTTTGT
521 GAAAAGAGAAGCTCCAAAGCAAGTCAAGACCCAGCAAGACCGGGCAAATTTGGCCTTTC-TTTGT
*
67628553 GACTTTGCTCTATTCCCATTATACGACACTGCACAAAAAGGGGCACGCTGAGGTATTTTCAATTT
585 GACTTTGCTCTATTCCCATTATACGACACTGCACAAAGAGGGGCACGCTGAGGTATTTTCAATTT
*
67628618 ATATTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGATGAG
650 ATATTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGATGAG
67628683 GTACTTTCAAAATCTACTTTTCAAATTAAGTTTCAAAAAAGACCAACTCATATTGCGAGAGGTGA
715 GTACTTTCAAAATCTACTTTTCAAATTAAGTTTCAAAAAAGACCAACTCATATTGCGAGAGGTGA
*
67628748 GTTGAGCCTTGGTTCACGTGCTGAGGTATTTTCAATTCTTTG
780 GTTGAGCCTTGGTTCACGTGCTGAGGTATTTTCAATTCTTTC
*
67628790 AATTTATATTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGGGTCACAT
1 AATTTATATTTTTC-AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACAT
* *
67628855 GATGAGGTATTTTCAAAATCTACTTTTCAAATTAAGTTTCAAAAAAGACCAACTCATATTGTGTG
65 GATGAGGTATTTTCAAAATCTACTTTTCAAATTAAGTTTCAAAAAAGACCAACTCATATTGCGAG
**
67628920 AGTTGAGCTCAGGATCGCATGTGGAGCAAAGAGTAAAGATTGGAGCTGATGGAAGACACTAGATT
130 AGTTGAGCTCAGGATCGCATGCCGAGCAAAGAGTAAAGATTGGAGCTGATGGAAGACACTAGATT
* *
67628985 TGGCCTTCCTGAAGTTGCAGTGGGGCAGGTCAAAGTTGCAAGTCCTGTCTCCCTGAAGTTACAGT
195 TGGCCTCCCTGAAGTTGCAGTGGGGCAGGTCAAAGTTGCAAGTCTTGTCTCCCTGAAGTTACAGT
*
67629050 GGAGCTGATCGATGATATCAGATCTTCCCTTTCTAAGTTACAGAAGAGAAGACCACAAACCTTAT
260 GGAGCTGATCGATGATATCAGATCTTGCCTTTCTAAGTTACAGAAGAGAAGACCACAAACCTTAT
*
67629115 CTCACTAAACCGATAGAAGAGCAGATTGAAGTTATAGATCTTATCTTTCTGAAGTTACAGTGAAG
325 CTCACTAAAGCGATAGAAGAGCAGATTGAAGTTATAGATCTTATCTTTCTGAAGTTACAGTGAAG
67629180 CAGATCGAAGCCACAAATCTCATATCCTTGAAGTTACATTGGAGTAGAGTGAAGCTACGAGGAAT
390 CAGATCGAAGCCACAAATCTCATATCCTTGAAGTTACATTGGAGTAGAGTGAAGCTACGAGGAAT
* * * *
67629245 ACATCAGAAGATGCAATAGATTGAACCAGAGCTACAAGATACGATGGACCGGAAAAAGACTACTT
455 ACATCAGAAGATGCAGTGGATTGAACCAGAGCTACAAGATGCGATGGACTGGAAAAAGACTACTT
*
67629310 GGAAAAGAGGAGCTCCAAAGCAAGTCAAGACCCAGCAAGACCGGGCAAATTTGGCCTTTCTTTGT
520 GGAAAAGAGAAGCTCCAAAGCAAGTCAAGACCCAGCAAGACCGGGCAAATTTGGCCTTTCTTTGT
*
67629375 GTCTTTGCTCTATTCCCATTATACGACACTGCACAAAGAGGGGCACGCTGAGGTATTTTCAATTT
585 GACTTTGCTCTATTCCCATTATACGACACTGCACAAAGAGGGGCACGCTGAGGTATTTTCAATTT
* *
67629440 ATATTTTTCAAAAAGAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGTCACATGATGAG
650 ATATTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGATGAG
* * *
67629505 GTACTTTCAAAATCTACTTTTCAAATTAAGTTTCAAAAAAGACTAACTCATATTGAGAGATGTGA
715 GTACTTTCAAAATCTACTTTTCAAATTAAGTTTCAAAAAAGACCAACTCATATTGCGAGAGGTGA
*
67629570 GTTGAGCCTTGGTTCACATGCTGAGGTATTTTCAATTCTTTC
780 GTTGAGCCTTGGTTCACGTGCTGAGGTATTTTCAATTCTTTC
**
67629612 AATTTATATTTTTCAAAAAAAATCAACTCATATTATGAGAGGTGAGTTGAGCCTCGGGTCACATG
1 AATTTATATTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATG
*
67629677 ATGAGGTATTTTCAAAATCTACTTTTCAAATTAAGTTTCAAAAAGGACCAACTCATATTGCGAGA
66 ATGAGGTATTTTCAAAATCTACTTTTCAAATTAAGTTTCAAAAAAGACCAACTCATATTGCGAGA
*
67629742 GTTGAGCTCAGGATCGCATGCCGAGCAAAGAGTAAAGATTGGACCTGATGGAAGACACTAGATTT
131 GTTGAGCTCAGGATCGCATGCCGAGCAAAGAGTAAAGATTGGAGCTGATGGAAGACACTAGATTT
* * * *
67629807 GGCCTCCCTTAAGTTGCAGTGGGGCAGGTCAAAGTTGCAAGTCTTGTCTCTCTGAAGTTGCAGTT
196 GGCCTCCCTGAAGTTGCAGTGGGGCAGGTCAAAGTTGCAAGTCTTGTCTCCCTGAAGTTACAGTG
*
67629872 GAGCTGATCGA-GAATATCAGATCTTGCCTTTCTAAGTTACAGAAGTGAAGACCACAAACCTTAT
261 GAGCTGATCGATG-ATATCAGATCTTGCCTTTCTAAGTTACAGAAGAGAAGACCACAAACCTTAT
* *
67629936 CTCACTCAAGCGATAGAAGAGCAGGTTGAAGTTATAGATCTTATCTTTCTGAAGTTACAGTGAAG
325 CTCACTAAAGCGATAGAAGAGCAGATTGAAGTTATAGATCTTATCTTTCTGAAGTTACAGTGAAG
* * *
67630001 CTGATCGAAGCCACAAATCTCATATCCTTGAAGTTACATTAGAGAAGAGTGAAGCTACGAGGAAT
390 CAGATCGAAGCCACAAATCTCATATCCTTGAAGTTACATTGGAGTAGAGTGAAGCTACGAGGAAT
* * *
67630066 ACATCAGAAGATGCAATGGATTGAAACAGAGCTACAAGATGCGGTGGACTGGAAAAAGACTACTT
455 ACATCAGAAGATGCAGTGGATTGAACCAGAGCTACAAGATGCGATGGACTGGAAAAAGACTACTT
67630131 GGAAAAGAGAAGCTCCAAAGCAAGTCAAGACCCAGCAAGACCGGGCAAATTTGGCCTTTCTTTGT
520 GGAAAAGAGAAGCTCCAAAGCAAGTCAAGACCCAGCAAGACCGGGCAAATTTGGCCTTTCTTTGT
*
67630196 GACTTTGCTCTATTCCCATTATACGACACTGCACAAAAAGGGGCACGCTGAGGTATTTTCAATTT
585 GACTTTGCTCTATTCCCATTATACGACACTGCACAAAGAGGGGCACGCTGAGGTATTTTCAATTT
*
67630261 ATATTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGATGAG
650 ATATTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGATGAG
67630326 GTACTTTCAAAATCTACTTTTCAAATTAAGTTTCAAAAAAGACCAACTCATATTGCGAGAGGTGA
715 GTACTTTCAAAATCTACTTTTCAAATTAAGTTTCAAAAAAGACCAACTCATATTGCGAGAGGTGA
*
67630391 GTTGAGCCTTGGTTCACGTGCTGAGGTATTTTCAATTCTTTG
780 GTTGAGCCTTGGTTCACGTGCTGAGGTATTTTCAATTCTTTC
***
67630433 AATTTATATTTTTCAAAAAAAATCAACTCATATTATTAGAGGTGAGTTGAGCCTCGGGTCACATG
1 AATTTATATTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCAC---
67630498 ATGAGGTATTATGAGAGGTGAGTTGAGCCTCGGGTCACATGATGAGGTATTTTCAAAATCTACTT
63 AT---G----AT--GAGGT-A-TT-----T----T--C----------A-----AA-ATCTACTT
* * *
67630563 TTCAAATTAAGTTTCAAAAAGGACCAAATCATATTGCGAGAGTTGAGCTCGGGATCGCATGCCGA
90 TTCAAATTAAGTTTCAAAAAAGACCAACTCATATTGCGAGAGTTGAGCTCAGGATCGCATGCCGA
* *
67630628 GCAAAGAGTAAAGATTGGACCTGATGGAAGACACTAGATTTGGCCTCCTTGAAGTTGCAGTGGGG
155 GCAAAGAGTAAAGATTGGAGCTGATGGAAGACACTAGATTTGGCCTCCCTGAAGTTGCAGTGGGG
* * * *
67630693 CAAGTCAAAGTTGCAAGTCTTGTCTCTCTGAAGTTGCAGTGGAGCTGATCGAGGATATCAGATCT
220 CAGGTCAAAGTTGCAAGTCTTGTCTCCCTGAAGTTACAGTGGAGCTGATCGATGATATCAGATCT
67630758 TGCCTTTCTAAGTTACAGAAGAGAAGACCACAAACCTTATCTCACTAAAGCGATAGAAGAGCAGA
285 TGCCTTTCTAAGTTACAGAAGAGAAGACCACAAACCTTATCTCACTAAAGCGATAGAAGAGCAGA
67630823 TTGAAGTTATAGATCTTATCTTTCTGAAGTTACAGTGAAGCAGATCGAAGCCACAAATCTCATAT
350 TTGAAGTTATAGATCTTATCTTTCTGAAGTTACAGTGAAGCAGATCGAAGCCACAAATCTCATAT
*
67630888 CCTTGAAGTTACATTGGAGTAGAGTGAAGCTACGAGGAATACATCAGAAGATGCAGTAGATTGAA
415 CCTTGAAGTTACATTGGAGTAGAGTGAAGCTACGAGGAATACATCAGAAGATGCAGTGGATTGAA
* *
67630953 CTAGAGCTACAAGATGCGATGGACTGGAAAAAGACTACTTGGAAAAGAGGAGCTCCAAAGCAAGT
480 CCAGAGCTACAAGATGCGATGGACTGGAAAAAGACTACTTGGAAAAGAGAAGCTCCAAAGCAAGT
*
67631018 CAAGACCCAGCAAGACCGGGCAAATTTGGCCTTTCTTTGTGTCTTTGCTCTATTCCCATTATACG
545 CAAGACCCAGCAAGACCGGGCAAATTTGGCCTTTCTTTGTGACTTTGCTCTATTCCCATTATACG
* *
67631083 ACAATG-AGCAAAGAGGGGCACGCTGAGGTATTTTCAATTTATATTTGTCAAAAAAAATCAACTC
610 ACACTGCA-CAAAGAGGGGCACGCTGAGGTATTTTCAATTTATATTTTTCAAAAAAAATCAACTC
* *
67631147 ATATTGCGAGAGCTGAGTTGAGCCTCGGGTCACATGATGAGGTATTTTCAAAATCTACTTTTCAA
674 ATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGATGAGGTACTTTCAAAATCTACTTTTCAA
* *
67631212 ATTAAGTTTCAACAAAGACCAACTCATATTGCGAGAGGTGAGTTGAACCTTGGTTCACGTGCTGA
739 ATTAAGTTTCAAAAAAGACCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGTTCACGTGCTGA
67631277 GGTATTTTCAATTCTTTC
804 GGTATTTTCAATTCTTTC
*
67631295 AATTTATATTTTTCAAAAAAAATCAACCCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATG
1 AATTTATATTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATG
67631360 ATGAGGTATTTTCAAAATCTACTTTTCAAATTAAGTTTCAAAAAAGACCAACTCATATTGCGAGA
66 ATGAGGTATTTTCAAAATCTACTTTTCAAATTAAGTTTCAAAAAAGACCAACTCATATTGCGAGA
* *
67631425 GTTGAGCTCAGGATCGCATGTCGAGCAAAGAGTAAAGATTAGAGCTGATGGAAGACACTAGATTT
131 GTTGAGCTCAGGATCGCATGCCGAGCAAAGAGTAAAGATTGGAGCTGATGGAAGACACTAGATTT
*
67631490 GGCCTCCCTGAAGTTGCAGTGGGGTAGGTCAAAGTTGCAAGTCTTGTCTCCCTGAAGTTACAGTG
196 GGCCTCCCTGAAGTTGCAGTGGGGCAGGTCAAAGTTGCAAGTCTTGTCTCCCTGAAGTTACAGTG
* *
67631555 AAGCTGATCGATGATATCAGATCTTGCCTTTCTAAGTTACGGAAGAGAAGACCACAAACCTTATC
261 GAGCTGATCGATGATATCAGATCTTGCCTTTCTAAGTTACAGAAGAGAAGACCACAAACCTTATC
* *
67631620 TCACTAAAGCGATAGAAGAGCAGATTAAAGTTATAGATCTTATCTTTCTGGAGTTACAGTGAAGC
326 TCACTAAAGCGATAGAAGAGCAGATTGAAGTTATAGATCTTATCTTTCTGAAGTTACAGTGAAGC
*
67631685 AGATCGAAGCCACAAATCTCATATCCTTGAAGTTACATTGGAGAAGAGTGAAGCTACGAGGAATA
391 AGATCGAAGCCACAAATCTCATATCCTTGAAGTTACATTGGAGTAGAGTGAAGCTACGAGGAATA
* *
67631750 CATCAGAAGATGCAGTGGATTGAACAAGAGCTACAAGGTGCGATGGACTGGAAAAAGACTACTTG
456 CATCAGAAGATGCAGTGGATTGAACCAGAGCTACAAGATGCGATGGACTGGAAAAAGACTACTTG
* * * **
67631815 GAAAAGAGGAGCTCCAAAGCAAGTCAAGACCCAGCAAGACCGAGAAAATTTTTCCTTTCTTTGTG
521 GAAAAGAGAAGCTCCAAAGCAAGTCAAGACCCAGCAAGACCGGGCAAATTTGGCCTTTCTTTGTG
* * *
67631880 TCTTTGCACTATTCCCATTATACGACAATG-AGCAAAGAGGGGCA
586 ACTTTGCTCTATTCCCATTATACGACACTGCA-CAAAGAGGGGCA
67631924 GCTATATATC
Statistics
Matches: 3753, Mismatches: 156, Indels: 94
0.94 0.04 0.02
Matches are distributed among these distances:
820 353 0.09
821 1705 0.45
822 349 0.09
823 542 0.14
824 2 0.00
827 2 0.00
831 2 0.00
833 5 0.00
834 1 0.00
835 2 0.00
837 1 0.00
839 1 0.00
840 1 0.00
843 1 0.00
844 1 0.00
846 1 0.00
848 2 0.00
849 1 0.00
850 5 0.00
852 2 0.00
856 2 0.00
859 2 0.00
861 3 0.00
862 766 0.20
863 1 0.00
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (821 bp):
AATTTATATTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATG
ATGAGGTATTTTCAAAATCTACTTTTCAAATTAAGTTTCAAAAAAGACCAACTCATATTGCGAGA
GTTGAGCTCAGGATCGCATGCCGAGCAAAGAGTAAAGATTGGAGCTGATGGAAGACACTAGATTT
GGCCTCCCTGAAGTTGCAGTGGGGCAGGTCAAAGTTGCAAGTCTTGTCTCCCTGAAGTTACAGTG
GAGCTGATCGATGATATCAGATCTTGCCTTTCTAAGTTACAGAAGAGAAGACCACAAACCTTATC
TCACTAAAGCGATAGAAGAGCAGATTGAAGTTATAGATCTTATCTTTCTGAAGTTACAGTGAAGC
AGATCGAAGCCACAAATCTCATATCCTTGAAGTTACATTGGAGTAGAGTGAAGCTACGAGGAATA
CATCAGAAGATGCAGTGGATTGAACCAGAGCTACAAGATGCGATGGACTGGAAAAAGACTACTTG
GAAAAGAGAAGCTCCAAAGCAAGTCAAGACCCAGCAAGACCGGGCAAATTTGGCCTTTCTTTGTG
ACTTTGCTCTATTCCCATTATACGACACTGCACAAAGAGGGGCACGCTGAGGTATTTTCAATTTA
TATTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGATGAGG
TACTTTCAAAATCTACTTTTCAAATTAAGTTTCAAAAAAGACCAACTCATATTGCGAGAGGTGAG
TTGAGCCTTGGTTCACGTGCTGAGGTATTTTCAATTCTTTC
Found at i:67629554 original size:90 final size:91
Alignment explanation
Indices: 67629445--67629747 Score: 383
Period size: 90 Copynumber: 3.4 Consensus size: 91
67629435 AATTTATATT
** *
67629445 TTTC-AAAAAGAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGTCACATGATGAGGTAC
1 TTTCAAAAAAGAATCAACTCATATTGAGAGAGGTGAGTTGAGCCTCGGGTCACATGATGAGGTAT
67629509 TTTCAAAATCTACTTTTCAAATTAAG
66 TTTCAAAATCTACTTTTCAAATTAAG
* * * * *
67629535 TTTCAAAAAAGACT-AACTCATATTGAGAGATGTGAGTTGAGCCTTGGTTCACATGCTGAGGTAT
1 TTTCAAAAAAGAATCAACTCATATTGAGAGAGGTGAGTTGAGCCTCGGGTCACATGATGAGGTAT
* *
67629599 TTTC--AAT-T-C-TTTCAATTTATATT
66 TTTCAAAATCTACTTTTCAAATTA-A-G
67629622 TTTCAAAAAA-AATCAACTCATATT-ATGAGAGGTGAGTTGAGCCTCGGGTCACATGATGAGGTA
1 TTTCAAAAAAGAATCAACTCATATTGA-GAGAGGTGAGTTGAGCCTCGGGTCACATGATGAGGTA
67629685 TTTTCAAAATCTACTTTTCAAATTAAG
65 TTTTCAAAATCTACTTTTCAAATTAAG
* * * *
67629712 TTTC-AAAAAGGACCAACTCATATTGCGAGAGTTGAG
1 TTTCAAAAAAGAATCAACTCATATTGAGAGAGGTGAG
67629748 CTCAGGATCG
Statistics
Matches: 180, Mismatches: 21, Indels: 24
0.80 0.09 0.11
Matches are distributed among these distances:
85 9 0.05
86 5 0.03
87 59 0.33
88 3 0.02
89 8 0.04
90 77 0.43
91 10 0.06
92 9 0.05
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.33
Consensus pattern (91 bp):
TTTCAAAAAAGAATCAACTCATATTGAGAGAGGTGAGTTGAGCCTCGGGTCACATGATGAGGTAT
TTTCAAAATCTACTTTTCAAATTAAG
Found at i:67630503 original size:87 final size:91
Alignment explanation
Indices: 67630251--67630507 Score: 346
Period size: 90 Copynumber: 2.9 Consensus size: 91
67630241 CGCTGAGGTA
67630251 TTTTCAATTTATATTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTTC
1 TTTTCAATTTATATTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTTC
*
67630316 ACATGATGAGGTACTTTCAAAATCTAC
66 ACATGATGAGGTATTTTC-AAATCTAC
* * * * *
67630343 TTTTCAAATTA-A-GTTTCAAAAAAGACCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGTTC
1 TTTTCAATTTATATTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTTC
* *
67630406 ACGTGCTGAGGTATTTTC-AAT-T-C
66 ACATGATGAGGTATTTTCAAATCTAC
* *** *
67630429 -TTTGAATTTATATTTTTCAAAAAAAATCAACTCATATTATTAGAGGTGAGTTGAGCCTCGGGTC
1 TTTTCAATTTATATTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTTC
67630493 ACATGATGAGGTATT
66 ACATGATGAGGTATT
67630508 ATGAGAGGTG
Statistics
Matches: 143, Mismatches: 20, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
85 8 0.06
86 2 0.01
87 57 0.40
88 3 0.02
90 62 0.43
91 1 0.01
92 10 0.07
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.35
Consensus pattern (91 bp):
TTTTCAATTTATATTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTTC
ACATGATGAGGTATTTTCAAATCTAC
Found at i:67630520 original size:41 final size:41
Alignment explanation
Indices: 67630463--67630548 Score: 163
Period size: 41 Copynumber: 2.1 Consensus size: 41
67630453 AATCAACTCA
*
67630463 TATTATTAGAGGTGAGTTGAGCCTCGGGTCACATGATGAGG
1 TATTATGAGAGGTGAGTTGAGCCTCGGGTCACATGATGAGG
67630504 TATTATGAGAGGTGAGTTGAGCCTCGGGTCACATGATGAGG
1 TATTATGAGAGGTGAGTTGAGCCTCGGGTCACATGATGAGG
67630545 TATT
1 TATT
67630549 TTCAAAATCT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 44 1.00
ACGTcount: A:0.24, C:0.12, G:0.34, T:0.30
Consensus pattern (41 bp):
TATTATGAGAGGTGAGTTGAGCCTCGGGTCACATGATGAGG
Found at i:67631338 original size:87 final size:90
Alignment explanation
Indices: 67631113--67631430 Score: 389
Period size: 90 Copynumber: 3.6 Consensus size: 90
67631103 CGCTGAGGTA
* *
67631113 TTTTCAATTTATATTTGTCAAAAAAAATCAACTCATATTGCGAGAGCTGAGTTGAGCCTCGGGTC
1 TTTTCAATTTATATTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTC
67631178 ACATGATGAGGTATTTTCAAAATCTAC
66 ACATGATGAGGTATTTTC--AATCTAC
* * * * * * * *
67631205 TTTTCAAATTA-A-GTTTCAACAAAGACCAACTCATATTGCGAGAGGTGAGTTGAACCTTGGTTC
1 TTTTCAATTTATATTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTC
* *
67631268 ACGTGCTGAGGTATTTTCAAT-T-C
66 ACATGATGAGGTATTTTCAATCTAC
*
67631291 -TTTCAATTTATATTTTTCAAAAAAAATCAACCCATATTGCGAGAGGTGAGTTGAGCCTCGGGTC
1 TTTTCAATTTATATTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTC
67631355 ACATGATGAGGTATTTTCAAAATCTAC
66 ACATGATGAGGTATTTTC--AATCTAC
* * * * *
67631382 TTTTCAAATTA-A-GTTTCAAAAAAGACCAACTCATATTGCGAGAGTTGAG
1 TTTTCAATTTATATTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAG
67631431 CTCAGGATCG
Statistics
Matches: 190, Mismatches: 29, Indels: 16
0.81 0.12 0.07
Matches are distributed among these distances:
85 9 0.05
86 2 0.01
87 60 0.32
88 3 0.02
89 3 0.02
90 91 0.48
91 3 0.02
92 19 0.10
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Consensus pattern (90 bp):
TTTTCAATTTATATTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTC
ACATGATGAGGTATTTTCAATCTAC
Found at i:67633198 original size:19 final size:18
Alignment explanation
Indices: 67633167--67633203 Score: 65
Period size: 19 Copynumber: 2.0 Consensus size: 18
67633157 GTTTTGCTAT
67633167 ATTATTATATTATTGTTG
1 ATTATTATATTATTGTTG
67633185 ATTATTATTATTATTGTTG
1 ATTATTA-TATTATTGTTG
67633204 TGAAAATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.27, C:0.00, G:0.11, T:0.62
Consensus pattern (18 bp):
ATTATTATATTATTGTTG
Found at i:67633362 original size:3 final size:3
Alignment explanation
Indices: 67633354--67633396 Score: 54
Period size: 3 Copynumber: 14.3 Consensus size: 3
67633344 TGTATCTCAA
67633354 TAT TAT TAT T-T ATAT TAT TAT T-T ATAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT -TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT T
67633397 CTTACCATTT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
2 2 0.06
3 32 0.89
4 2 0.06
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:67633370 original size:12 final size:12
Alignment explanation
Indices: 67633353--67633396 Score: 72
Period size: 12 Copynumber: 3.7 Consensus size: 12
67633343 TTGTATCTCA
67633353 ATATTATTATTT
1 ATATTATTATTT
67633365 ATATTATTATTT
1 ATATTATTATTT
67633377 ATATTATTA-TT
1 ATATTATTATTT
67633388 ATTATTATT
1 A-TATTATT
67633397 CTTACCATTT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
11 3 0.10
12 28 0.90
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (12 bp):
ATATTATTATTT
Found at i:67633760 original size:21 final size:20
Alignment explanation
Indices: 67633638--67633763 Score: 67
Period size: 23 Copynumber: 5.8 Consensus size: 20
67633628 TATTGATAGT
67633638 TTTTTTTATATATAT-TATTA
1 TTTTTTTATATATATATA-TA
** *
67633658 TTTCTAATATATATATCGTATA
1 TTT-TTTTATATATAT-ATATA
*
67633680 TGTTTATGTATATATCATATATA
1 T-TTT-TTTATATAT-ATATATA
*
67633703 -TTTTTAATATTATTAGTTATATA
1 TTTTTTTATA-TA-TA--TATATA
*
67633726 TTTTTTATACTATATCATGTATA
1 TTTTTT-TA-TATAT-ATATATA
67633749 TTTTTTTATATATAT
1 TTTTTTTATATATAT
67633764 TATCCTTATT
Statistics
Matches: 83, Mismatches: 9, Indels: 28
0.69 0.08 0.23
Matches are distributed among these distances:
20 9 0.11
21 21 0.25
22 7 0.08
23 32 0.39
24 8 0.10
25 4 0.05
26 2 0.02
ACGTcount: A:0.33, C:0.04, G:0.04, T:0.60
Consensus pattern (20 bp):
TTTTTTTATATATATATATA
Found at i:67643428 original size:21 final size:21
Alignment explanation
Indices: 67643370--67643428 Score: 57
Period size: 21 Copynumber: 2.8 Consensus size: 21
67643360 TGTGGCTAAT
*
67643370 TTAAAAATGATTTAAAGATCCA
1 TTAAAAAT-ATTTAAAAATCCA
**
67643392 TTAAAAATATGGAAAAATACC-
1 TTAAAAATATTTAAAAAT-CCA
*
67643413 TTTAAAATATTTAAAA
1 TTAAAAATATTTAAAA
67643429 TTCATATAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
21 20 0.67
22 10 0.33
ACGTcount: A:0.54, C:0.07, G:0.07, T:0.32
Consensus pattern (21 bp):
TTAAAAATATTTAAAAATCCA
Found at i:67652173 original size:16 final size:15
Alignment explanation
Indices: 67652149--67652178 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
67652139 AACTATTTTA
67652149 TTACAAATTTCACTC
1 TTACAAATTTCACTC
67652164 TTACATAATTTCACT
1 TTACA-AATTTCACT
67652179 TACTCCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (15 bp):
TTACAAATTTCACTC
Found at i:67667709 original size:15 final size:15
Alignment explanation
Indices: 67667690--67667734 Score: 63
Period size: 15 Copynumber: 3.0 Consensus size: 15
67667680 AACTAGGATT
*
67667690 AAGAAGTCCAAGATA
1 AAGAAATCCAAGATA
*
67667705 GAGAAATCCAAGATA
1 AAGAAATCCAAGATA
*
67667720 AAGAAATTCAAGATA
1 AAGAAATCCAAGATA
67667735 CAATATCATA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.56, C:0.11, G:0.18, T:0.16
Consensus pattern (15 bp):
AAGAAATCCAAGATA
Found at i:67673813 original size:36 final size:36
Alignment explanation
Indices: 67673773--67673845 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
67673763 AATTATCAAC
67673773 ATGATTCCATGGAAATATAATCATAATTACACTTTT
1 ATGATTCCATGGAAATATAATCATAATTACACTTTT
67673809 ATGATTCCATGGAAATATAATCATAATTACACTTTT
1 ATGATTCCATGGAAATATAATCATAATTACACTTTT
67673845 A
1 A
67673846 CTTATTTTCT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.40, C:0.14, G:0.08, T:0.38
Consensus pattern (36 bp):
ATGATTCCATGGAAATATAATCATAATTACACTTTT
Found at i:67674851 original size:30 final size:30
Alignment explanation
Indices: 67674816--67674872 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
67674806 CATCCATTAT
*
67674816 GAACTCGGACCACTCAACGAGCTCAGACTC
1 GAACTCAGACCACTCAACGAGCTCAGACTC
* *
67674846 GAACTCAGACCTCTCCACGAGCTCAGA
1 GAACTCAGACCACTCAACGAGCTCAGA
67674873 TGCTACATAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.30, C:0.37, G:0.19, T:0.14
Consensus pattern (30 bp):
GAACTCAGACCACTCAACGAGCTCAGACTC
Found at i:67685034 original size:51 final size:51
Alignment explanation
Indices: 67684940--67685036 Score: 124
Period size: 51 Copynumber: 1.9 Consensus size: 51
67684930 TGGACTTCCG
**
67684940 TACACGGGCAGACCACACGCCCGTGTCCTTTTAGTAGAATCGAACATGACT
1 TACACGGGCAGACCACACGCCCGTGTCCTTTTAACAGAATCGAACATGACT
* * **
67684991 TACACGGGTAGACCACACGCCTGTGT-CTATTTAACAGGCTCGAACA
1 TACACGGGCAGACCACACGCCCGTGTCCT-TTTAACAGAATCGAACA
67685037 CGGTTTGAAG
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
50 2 0.05
51 37 0.95
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (51 bp):
TACACGGGCAGACCACACGCCCGTGTCCTTTTAACAGAATCGAACATGACT
Found at i:67688420 original size:12 final size:14
Alignment explanation
Indices: 67688403--67688434 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
67688393 GTAAGAACAC
67688403 ATGTGTA-G-TACT
1 ATGTGTAGGCTACT
67688415 ATGTGTAGGCTACT
1 ATGTGTAGGCTACT
67688429 ATGTGT
1 ATGTGT
67688435 TTAAGACAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.39
13 1 0.06
14 10 0.56
ACGTcount: A:0.22, C:0.09, G:0.28, T:0.41
Consensus pattern (14 bp):
ATGTGTAGGCTACT
Found at i:67688519 original size:50 final size:50
Alignment explanation
Indices: 67688402--67688643 Score: 262
Period size: 50 Copynumber: 4.8 Consensus size: 50
67688392 TGTAAGAACA
* * * *
67688402 CATGTGTAGTACTATGTGTAGGCTACTATGTGTTTAAGACA-ATT-TTAGGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTG--T-A-CCAGATTGTTAGGTCG
*
67688454 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCG
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTCG
** **
67688504 CATGTGTAGTACTAAGTGCAGGCTACTATGCATACC----TGTTAACATCG
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTT-AGGTCG
*
67688551 ATCATGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCG
1 --CA--TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTCG
*
67688605 CATGTGTAGTACTAAGTGCAGGCTACTATGTATACCAGA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
67688644 GAGCTTCGGT
Statistics
Matches: 163, Mismatches: 16, Indels: 24
0.80 0.08 0.12
Matches are distributed among these distances:
46 4 0.02
47 4 0.02
48 2 0.01
49 6 0.04
50 77 0.47
51 32 0.20
52 31 0.19
54 4 0.02
55 3 0.02
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.32
Consensus pattern (50 bp):
CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTCG
Found at i:67688588 original size:101 final size:101
Alignment explanation
Indices: 67688456--67688640 Score: 343
Period size: 101 Copynumber: 1.8 Consensus size: 101
67688446 TTAGGTCACA
*
67688456 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGT
67688521 GCAGGCTACTATGCATACCTGTTAACATCGATCATG
66 GCAGGCTACTATGCATACCTGTTAACATCGATCATG
*
67688557 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGT
*
67688622 GCAGGCTACTATGTATACC
66 GCAGGCTACTATGCATACC
67688641 AGAGAGCTTC
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
101 81 1.00
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (101 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGT
GCAGGCTACTATGCATACCTGTTAACATCGATCATG
Found at i:67688636 original size:24 final size:24
Alignment explanation
Indices: 67688559--67688636 Score: 61
Period size: 24 Copynumber: 3.2 Consensus size: 24
67688549 CGATCATGTG
67688559 TGTAGTACTAAGTGCAGGCTACTA
1 TGTAGTACTAAGTGCAGGCTACTA
* * * * *
67688583 TGT-GTACCAGATTGATAGG-TCGCATG
1 TGTAGTACTA-AGTG-CAGGCT-AC-TA
67688609 TGTAGTACTAAGTGCAGGCTACTA
1 TGTAGTACTAAGTGCAGGCTACTA
67688633 TGTA
1 TGTA
67688637 TACCAGAGAG
Statistics
Matches: 38, Mismatches: 10, Indels: 12
0.63 0.17 0.20
Matches are distributed among these distances:
23 5 0.13
24 12 0.32
25 8 0.21
26 8 0.21
27 5 0.13
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (24 bp):
TGTAGTACTAAGTGCAGGCTACTA
Found at i:67689416 original size:180 final size:180
Alignment explanation
Indices: 67689160--67689497 Score: 518
Period size: 180 Copynumber: 1.9 Consensus size: 180
67689150 TTCGAGATCT
* *
67689160 GTACCATGAGTTAAATAATTTTTAGTGAAGAAAGATCGGAACTTTCAGACAGTGAAACAAGGGTA
1 GTACCATGAGATAAATAATTTTTAGTGAAGAAAGATCAGAACTTTCAGACAGTGAAACAAGGGTA
** * *
67689225 TTTTTAATGAATAAACTGTACTAATTGGCTAAACCAAAAATTTTGGAAA-TTTTATGGTAAGAAT
66 ACTTTAATGAATAAACTGTACTAATTGGATAAACCAAAAATTCT-GAAACTTTTATGGTAAGAAT
67689289 ATATGTGAGTCTAGTTTTTGGAAAAATTAGCAATTCTTAATTTGGAGTCCC
130 ATATGTGAGTCTAGTTTTTGGAAAAATTAGCAATTCTTAATTTGGAGTCCC
* * * * * * *
67689340 GTACCATGAGATAAATAATTTTTAGTGATGAGAGGTTAGAAGTATT-GGACAGTGAAACAGGGGT
1 GTACCATGAGATAAATAATTTTTAGTGAAGAAAGATCAGAACT-TTCAGACAGTGAAACAAGGGT
67689404 AACTTTAATGAATAAACTGTACTAATTGGATAAACCAAAAATTCTGAAACTTTTATGGTAAGAAT
65 AACTTTAATGAATAAACTGTACTAATTGGATAAACCAAAAATTCTGAAACTTTTATGGTAAGAAT
*
67689469 ATATGTGAGTCTAGTTTTTGGGAAAATTA
130 ATATGTGAGTCTAGTTTTTGGAAAAATTA
67689498 ACGGATCTTA
Statistics
Matches: 142, Mismatches: 14, Indels: 4
0.89 0.09 0.03
Matches are distributed among these distances:
179 4 0.03
180 136 0.96
181 2 0.01
ACGTcount: A:0.38, C:0.09, G:0.20, T:0.33
Consensus pattern (180 bp):
GTACCATGAGATAAATAATTTTTAGTGAAGAAAGATCAGAACTTTCAGACAGTGAAACAAGGGTA
ACTTTAATGAATAAACTGTACTAATTGGATAAACCAAAAATTCTGAAACTTTTATGGTAAGAATA
TATGTGAGTCTAGTTTTTGGAAAAATTAGCAATTCTTAATTTGGAGTCCC
Found at i:67694317 original size:27 final size:28
Alignment explanation
Indices: 67694236--67694330 Score: 129
Period size: 27 Copynumber: 3.4 Consensus size: 28
67694226 GAGATTGGCG
* * * *
67694236 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
67694265 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
67694293 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
67694320 CTGAGTGTGCG
1 CTAAGTGTGCG
67694331 GACTTAATAT
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.39
28 22 0.36
29 15 0.25
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:67694341 original size:27 final size:27
Alignment explanation
Indices: 67694261--67694343 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
67694251 TAAATTGTAC
* *
67694261 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
67694289 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
67694316 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
67694343 A
1 A
67694344 CTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:67702258 original size:27 final size:28
Alignment explanation
Indices: 67702177--67702271 Score: 129
Period size: 27 Copynumber: 3.4 Consensus size: 28
67702167 GAGATTGGCG
* * * *
67702177 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
67702206 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
67702234 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
67702261 CTGAGTGTGCG
1 CTAAGTGTGCG
67702272 GACTTAATAT
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.39
28 22 0.36
29 15 0.25
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:67702282 original size:27 final size:27
Alignment explanation
Indices: 67702202--67702284 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
67702192 TAAATTGTAC
* *
67702202 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
67702230 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
67702257 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
67702284 A
1 A
67702285 CTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:67706831 original size:50 final size:50
Alignment explanation
Indices: 67706766--67707014 Score: 275
Period size: 50 Copynumber: 5.0 Consensus size: 50
67706756 ATGTGTTTAA
* * *
67706766 GATAGGTCACTTGTGTAGTACTAAGCGCAGGCTACTACGTGTACCAAATT
1 GATAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATT
* * * * * *
67706816 GTTAGGTCGCATGTGTAGTACTAATTGCAGGCTACTATGCGTACCCG-TT
1 GATAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATT
* * * * * ** *
67706865 AACTTCGATCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTATTAGATG
1 GA--TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATT
* * * *
67706917 GATAAGTCACGTGTGTAATACTAAGTGCAGGCTACTACGTGTTCCAGATT
1 GATAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATT
*
67706967 GATAGGTCACATGTGTAGTACTAAGTGCCGGCTACTACGTGTACCAGA
1 GATAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
67707015 AAGCTTCGGT
Statistics
Matches: 158, Mismatches: 38, Indels: 6
0.78 0.19 0.03
Matches are distributed among these distances:
49 2 0.01
50 120 0.76
51 34 0.22
52 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (50 bp):
GATAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATT
Found at i:67706900 original size:101 final size:100
Alignment explanation
Indices: 67706767--67707012 Score: 260
Period size: 101 Copynumber: 2.5 Consensus size: 100
67706757 TGTGTTTAAG
* * * * * * *
67706767 ATAGGTCACTTGTGTAGTACTAAGCGCAGGCTACTACGTGTACCAAATTGTTAGGTCGCATGTGT
1 ATAGATCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATGGATAAGTCACATGTGT
* * * *
67706832 AGTACTAATTGCAGGCTACTATGCGTACCCG-TTA
66 AATACTAAGTGCAGGCTACTACGCGTACCAGATTA
* * * ** * *
67706866 ACTTCGATCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTATTAGATGGATAAGTCACGTGT
1 A--TAGATCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATGGATAAGTCACATGT
* * *
67706931 GTAATACTAAGTGCAGGCTACTACGTGTTCCAGATTG
64 GTAATACTAAGTGCAGGCTACTACGCGTACCAGATTA
* *
67706968 ATAGGTCACATGTGTAGTACTAAGTGCCGGCTACTACGTGTACCA
1 ATAGATCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCA
67707013 GAAAGCTTCG
Statistics
Matches: 117, Mismatches: 27, Indels: 5
0.79 0.18 0.03
Matches are distributed among these distances:
99 1 0.01
100 37 0.32
101 76 0.65
102 3 0.03
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (100 bp):
ATAGATCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATGGATAAGTCACATGTGT
AATACTAAGTGCAGGCTACTACGCGTACCAGATTA
Found at i:67721802 original size:46 final size:46
Alignment explanation
Indices: 67721735--67721860 Score: 216
Period size: 46 Copynumber: 2.7 Consensus size: 46
67721725 AACCCGCCCC
* * *
67721735 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
67721781 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
67721827 TAAATGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
67721861 TGCTCAACCA
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 76 1.00
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:67722315 original size:30 final size:30
Alignment explanation
Indices: 67722281--67722340 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
67722271 ATTTAATACG
67722281 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
67722311 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
67722341 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:67734238 original size:9 final size:9
Alignment explanation
Indices: 67734224--67734251 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
67734214 AAATCAGAAT
67734224 ATAAAAATA
1 ATAAAAATA
67734233 ATAAAAATA
1 ATAAAAATA
67734242 ATAAAAATA
1 ATAAAAATA
67734251 A
1 A
67734252 ACTAACATAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (9 bp):
ATAAAAATA
Found at i:67741429 original size:21 final size:21
Alignment explanation
Indices: 67741403--67741445 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
67741393 CAGGGCACAC
*
67741403 GCCCGTGTGGAATGATAACAT
1 GCCCGTGTGGAAGGATAACAT
* *
67741424 GCCCGTGTTGAAGGGTAACAT
1 GCCCGTGTGGAAGGATAACAT
67741445 G
1 G
67741446 TCTGTGTCCC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.26, C:0.19, G:0.33, T:0.23
Consensus pattern (21 bp):
GCCCGTGTGGAAGGATAACAT
Found at i:67742696 original size:46 final size:45
Alignment explanation
Indices: 67742565--67742774 Score: 171
Period size: 46 Copynumber: 4.6 Consensus size: 45
67742555 ATATCCGTGC
* * *
67742565 CGATGCCATGTCCCAGACATGGTCTTACACT-G-ACACATCTTGTAGT
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCATCTCG-AGG
* * * *
67742611 CGTTGCATGTCCCAAACATGTCCTACACTGGC-TTACATCTCGAGG
1 CGATGCATGTCCCAGACATGTCTTACACTGGCACT-CATCTCGAGG
67742656 ACGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTC-AGTG
1 -CGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCGAG-G
* * * *
67742702 CCAATGCCATGTCCCAG-CATGGTCTTACACTGGCTCTCATAAT-GTGG
1 -CGATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCAT-CTCGAGG
*
67742749 CTGATGCATGTCCCAAACATGTCTTA
1 C-GATGCATGTCCCAGACATGTCTTA
67742775 TACTAGCTCA
Statistics
Matches: 134, Mismatches: 18, Indels: 24
0.76 0.10 0.14
Matches are distributed among these distances:
44 9 0.07
45 18 0.13
46 69 0.51
47 36 0.27
48 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.28
Consensus pattern (45 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCGAGG
Found at i:67742732 original size:93 final size:89
Alignment explanation
Indices: 67742565--67742774 Score: 203
Period size: 93 Copynumber: 2.3 Consensus size: 89
67742555 ATATCCGTGC
* * **
67742565 CGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTTGTAGTCGTTGCATGTCCCAAACAT
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGACACATCTAGTAGCCAATGCATGTCCCAAACAT
*
67742630 GTCCTACACTGGCT-TACAT-CTCGAGG
64 GTCCTACACTGGCTCT-CATAAT-GAGG
* *
67742656 ACGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCAGT-GCCAATGCCATGTCCC-AG
1 -CGATGCATGTCCCAGACATGTCTTACACT-G-ACACATCT-AGTAGCCAATG-CATGTCCCAAA
* *
67742719 CATGGTCTTACACTGGCTCTCATAATGTGG
61 CAT-GTCCTACACTGGCTCTCATAATGAGG
*
67742749 CTGATGCATGTCCCAAACATGTCTTA
1 C-GATGCATGTCCCAGACATGTCTTA
67742775 TACTAGCTCA
Statistics
Matches: 100, Mismatches: 10, Indels: 15
0.80 0.08 0.12
Matches are distributed among these distances:
90 10 0.10
91 15 0.15
92 21 0.21
93 52 0.52
94 2 0.02
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.28
Consensus pattern (89 bp):
CGATGCATGTCCCAGACATGTCTTACACTGACACATCTAGTAGCCAATGCATGTCCCAAACATGT
CCTACACTGGCTCTCATAATGAGG
Found at i:67747013 original size:6 final size:6
Alignment explanation
Indices: 67746982--67747050 Score: 77
Period size: 6 Copynumber: 11.2 Consensus size: 6
67746972 CAACCCAATT
* * *
67746982 ATAAAA ATACAA AT-AAT TTAATAA ATAAAA ATAAAA ATCAAAAA ATAAAA
1 ATAAAA ATAAAA ATAAAA ATAA-AA ATAAAA ATAAAA AT--AAAA ATAAAA
67747032 ATAAAA ATAAAA ATAAAA A
1 ATAAAA ATAAAA ATAAAA A
67747051 ACATATAATT
Statistics
Matches: 53, Mismatches: 6, Indels: 8
0.79 0.09 0.12
Matches are distributed among these distances:
5 2 0.04
6 41 0.77
7 4 0.08
8 6 0.11
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.20
Consensus pattern (6 bp):
ATAAAA
Found at i:67747051 original size:20 final size:20
Alignment explanation
Indices: 67747004--67747044 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
67746994 ATAATTTAAT
*
67747004 AAATAAAAATAAAAATCAAA
1 AAATAAAAATAAAAATAAAA
67747024 AAATAAAAATAAAAATAAAA
1 AAATAAAAATAAAAATAAAA
67747044 A
1 A
67747045 TAAAAAACAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.83, C:0.02, G:0.00, T:0.15
Consensus pattern (20 bp):
AAATAAAAATAAAAATAAAA
Found at i:67747088 original size:9 final size:9
Alignment explanation
Indices: 67747070--67747144 Score: 71
Period size: 9 Copynumber: 8.3 Consensus size: 9
67747060 TTTATACAAA
67747070 TAATTCGGT
1 TAATTCGGT
*
67747079 TAATTTGGT
1 TAATTCGGT
67747088 TAATTCGGT
1 TAATTCGGT
* *
67747097 TAATTTGGG
1 TAATTCGGT
67747106 TAATTCAGG-
1 TAATTC-GGT
**
67747115 TAATTCAAT
1 TAATTCGGT
* *
67747124 TACTCCGGT
1 TAATTCGGT
67747133 TAATTCGGT
1 TAATTCGGT
67747142 TAA
1 TAA
67747145 ATTTATGCTT
Statistics
Matches: 51, Mismatches: 13, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
9 49 0.96
10 2 0.04
ACGTcount: A:0.27, C:0.11, G:0.20, T:0.43
Consensus pattern (9 bp):
TAATTCGGT
Found at i:67750484 original size:10 final size:11
Alignment explanation
Indices: 67750459--67750487 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
67750449 AGATGACACT
67750459 GAAAGGAAATG
1 GAAAGGAAATG
67750470 GAAAGGAAA-G
1 GAAAGGAAATG
67750480 GAAAGGAA
1 GAAAGGAA
67750488 GTAAGCATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 9 0.50
11 9 0.50
ACGTcount: A:0.59, C:0.00, G:0.38, T:0.03
Consensus pattern (11 bp):
GAAAGGAAATG
Found at i:67750933 original size:46 final size:46
Alignment explanation
Indices: 67750876--67750986 Score: 125
Period size: 46 Copynumber: 2.4 Consensus size: 46
67750866 GTAGCTGATG
* * *
67750876 CATGTCCTACACTGGCTTACGTCCCGAGGCCGATG-CATGTCCCAGA
1 CATGTCTTACACTGGCTT-CGTCCCAAGGCCAATGCCATGTCCCAGA
* * * *
67750922 CATGTCTTACACTGACACTCGTCTCAATGCCAATGCCATGTCCCAGA
1 CATGTCTTACACTGGC-TTCGTCCCAAGGCCAATGCCATGTCCCAGA
67750969 CATGGTCTTACACTGGCT
1 CAT-GTCTTACACTGGCT
67750987 CTTATAATGT
Statistics
Matches: 53, Mismatches: 9, Indels: 5
0.79 0.13 0.07
Matches are distributed among these distances:
46 26 0.49
47 15 0.28
48 12 0.23
ACGTcount: A:0.22, C:0.33, G:0.20, T:0.25
Consensus pattern (46 bp):
CATGTCTTACACTGGCTTCGTCCCAAGGCCAATGCCATGTCCCAGA
Found at i:67751013 original size:47 final size:45
Alignment explanation
Indices: 67750903--67751033 Score: 131
Period size: 47 Copynumber: 2.8 Consensus size: 45
67750893 TACGTCCCGA
* *
67750903 GGCCGATGCATGTCCCAGACATGTCTTACACTGACACTCGTCTCAAT
1 GGCCGATGCATGTCCCAGACATGTCTTACACTG--GCTCGTATCAAT
* *
67750950 -GCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCTTAT-AATGT
1 GGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCGTATCAA--T
* * *
67750997 GGCCGATGCATATCCCAAACATGTCTTACACTAGCTC
1 GGCCGATGCATGTCCCAGACATGTCTTACACTGGCTC
67751034 ACCCAAATGA
Statistics
Matches: 71, Mismatches: 8, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
45 2 0.03
46 25 0.35
47 27 0.38
48 17 0.24
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (45 bp):
GGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCGTATCAAT
Found at i:67753747 original size:38 final size:38
Alignment explanation
Indices: 67753695--67753772 Score: 138
Period size: 38 Copynumber: 2.1 Consensus size: 38
67753685 TGCTATATGA
* *
67753695 AAGCATGATGCTTTGGATAGGTGATATGTTGACATTAC
1 AAGCATAATACTTTGGATAGGTGATATGTTGACATTAC
67753733 AAGCATAATACTTTGGATAGGTGATATGTTGACATTAC
1 AAGCATAATACTTTGGATAGGTGATATGTTGACATTAC
67753771 AA
1 AA
67753773 AGTCATGAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.33, C:0.10, G:0.23, T:0.33
Consensus pattern (38 bp):
AAGCATAATACTTTGGATAGGTGATATGTTGACATTAC
Found at i:67758123 original size:24 final size:24
Alignment explanation
Indices: 67758074--67758124 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
67758064 GCCAATATGA
*
67758074 AAAGTGATAGAGGCACTATGGCGC
1 AAAGTGATAGAGGCACTATGACGC
* * *
67758098 AAAGTGATGGTGGCACTATGATGC
1 AAAGTGATAGAGGCACTATGACGC
67758122 AAA
1 AAA
67758125 TGGCGGAGGC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.35, C:0.14, G:0.31, T:0.20
Consensus pattern (24 bp):
AAAGTGATAGAGGCACTATGACGC
Found at i:67761133 original size:50 final size:50
Alignment explanation
Indices: 67761024--67761310 Score: 265
Period size: 50 Copynumber: 5.7 Consensus size: 50
67761014 GAGAACACAC
* * * *** *
67761024 GTGTAGTACTATGTGCATGCTACTATGTGTTTAAGATGGTTTTAGGTCACGT
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG--TTAGGTCACGT
* * *
67761076 GTGTAGTACTAAGTGCAGGCCACTACGTGTACCAGATAGTTAGGTCGCAT
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACGT
* ** * * *
67761126 GTGTAGTACTAAGTGCAGGCTACTATGCATACTC-GACAACTTCA-ATCACGT
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CAGA-TAGTT-AGGTCACGT
* * *
67761177 GTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCATGT
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACGT
* * * * * *
67761227 GTGTAGCACTAGGTGCAGGCTACTACGTGTATCAGATTGTT-GGTCGCAT
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACGT
* *
67761276 GTGTAGTACTAAGTGCAGGCTACTATGCGTACCAG
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAG
67761311 GTAGCTTCGG
Statistics
Matches: 191, Mismatches: 39, Indels: 13
0.79 0.16 0.05
Matches are distributed among these distances:
49 36 0.19
50 85 0.45
51 38 0.20
52 32 0.17
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (50 bp):
GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACGT
Found at i:67761202 original size:101 final size:101
Alignment explanation
Indices: 67761070--67761251 Score: 292
Period size: 101 Copynumber: 1.8 Consensus size: 101
67761060 TGGTTTTAGG
* *
67761070 TCACGTGTGTAGTACTAAGTGCAGGCCACTACGTGTACCAGATAGTTAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCCACTACGTGTACCAGATAGTTAGGTCACATGTGTAGCAC
67761135 TAAGTGCAGGCTACTATGCATACTCGACAACTTCAA
66 TAAGTGCAGGCTACTATGCATACTCGACAACTTCAA
* * * **
67761171 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCATGTGTGTAGCAC
1 TCACGTGTGTAGTACTAAGTGCAGGCCACTACGTGTACCAGATAGTTAGGTCACATGTGTAGCAC
*
67761236 TAGGTGCAGGCTACTA
66 TAAGTGCAGGCTACTA
67761252 CGTGTATCAG
Statistics
Matches: 73, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
101 73 1.00
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (101 bp):
TCACGTGTGTAGTACTAAGTGCAGGCCACTACGTGTACCAGATAGTTAGGTCACATGTGTAGCAC
TAAGTGCAGGCTACTATGCATACTCGACAACTTCAA
Found at i:67761346 original size:150 final size:152
Alignment explanation
Indices: 67761024--67761303 Score: 411
Period size: 151 Copynumber: 1.8 Consensus size: 152
67761014 GAGAACACAC
* * * * *
67761024 GTGTAGTACTATGTGCATGCTACTATGTGTTTAAGATGGTTTTAGGTCACGTGTGTAGTACTAAG
1 GTGTAGTAATATGTGCAGGCTACTACGTGTATAAGATGG-TTTAGGTCACGTGTGTAGCACTAAG
67761089 TGCAGGCCACTACGTGTACCAGATAGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGC
65 TGCAGGCCACTACGTGTACCAGATAGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGC
*
67761154 ATACTCGACAACTTCAATCACGT
130 ATACTCGACAACTTCAATCAAGT
* * * * *
67761177 GTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGG-TTAGGTCATGTGTGTAGCACTAGGT
1 GTGTAGTAATATGTGCAGGCTACTACGTGTATAAGATGGTTTAGGTCACGTGTGTAGCACTAAGT
* * *
67761241 GCAGGCTACTACGTGTATCAGATTGTT-GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGC
66 GCAGGCCACTACGTGTACCAGATAGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGC
67761304 GTACCAGGTA
Statistics
Matches: 116, Mismatches: 11, Indels: 3
0.89 0.08 0.02
Matches are distributed among these distances:
150 36 0.31
151 46 0.40
153 34 0.29
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.31
Consensus pattern (152 bp):
GTGTAGTAATATGTGCAGGCTACTACGTGTATAAGATGGTTTAGGTCACGTGTGTAGCACTAAGT
GCAGGCCACTACGTGTACCAGATAGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCA
TACTCGACAACTTCAATCAAGT
Found at i:67762420 original size:34 final size:34
Alignment explanation
Indices: 67762381--67762450 Score: 140
Period size: 34 Copynumber: 2.1 Consensus size: 34
67762371 TAAAATTTCC
67762381 CTAAAACTAGACTAATATATCTATTTACTAATTT
1 CTAAAACTAGACTAATATATCTATTTACTAATTT
67762415 CTAAAACTAGACTAATATATCTATTTACTAATTT
1 CTAAAACTAGACTAATATATCTATTTACTAATTT
67762449 CT
1 CT
67762451 TTCAAGAATT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.40, C:0.16, G:0.03, T:0.41
Consensus pattern (34 bp):
CTAAAACTAGACTAATATATCTATTTACTAATTT
Found at i:67771842 original size:21 final size:21
Alignment explanation
Indices: 67771816--67771870 Score: 101
Period size: 21 Copynumber: 2.6 Consensus size: 21
67771806 GTTCGCTTCT
67771816 CCCACGCCCGTGTGTGCAAGC
1 CCCACGCCCGTGTGTGCAAGC
*
67771837 CCCACGCCTGTGTGTGCAAGC
1 CCCACGCCCGTGTGTGCAAGC
67771858 CCCACGCCCGTGT
1 CCCACGCCCGTGT
67771871 TAATTTGACA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.13, C:0.44, G:0.27, T:0.16
Consensus pattern (21 bp):
CCCACGCCCGTGTGTGCAAGC
Found at i:67788065 original size:48 final size:48
Alignment explanation
Indices: 67787988--67788276 Score: 281
Period size: 48 Copynumber: 6.0 Consensus size: 48
67787978 ATACTAGGGT
* * * * *
67787988 TATGTGAGCTAGCGTAAGACCATGTCTGGGACATGGCATTGGCATTGA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATCGA
* *
67788036 TATGAGAGCTAGTGTAAGACCATGCCTGGGACATGGCATCGACCTCGA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATCGA
* * * * * **
67788084 TATGTGAGCCAGTGTAAGACCATGTTTGGGACTTGACATCGACATTTA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATCGA
* * * *
67788132 TATGAGAGCTAGTGTAAGAACCATGTATGGGACATGGCATCGGCCTCGG
1 TATGAGAGCTAGTGTAAG-ACCATGTCTGGGACATGGCATCGACATCGA
* * * * *
67788181 CATGCGGGCTAGTGTAAGACCATGTTTGGAACATGGCATCGACATCGATA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATCG--A
* * ** * * *
67788231 TATAAGAGCCAGCATAAAACCATGTCTGTGACATGGCATCGGCATC
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATC
67788277 TTACCCTTTT
Statistics
Matches: 192, Mismatches: 46, Indels: 4
0.79 0.19 0.02
Matches are distributed among these distances:
48 121 0.63
49 37 0.19
50 34 0.18
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.25
Consensus pattern (48 bp):
TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATCGA
Found at i:67788202 original size:97 final size:97
Alignment explanation
Indices: 67787993--67788273 Score: 332
Period size: 97 Copynumber: 2.9 Consensus size: 97
67787983 AGGGTTATGT
* * * * *
67787993 GAGCTAGCGTAAGACCATGTCTGGGACATGGCATTGGCATTGATATGAGAGCTAGTGTAAG-ACC
1 GAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGACATTTATATGAGAGCTAGTGTAAGAACC
* * * *
67788057 ATGCCTGGGACATGGCATCGACCTCGATATGT
66 ATGTCTGGGACATGGCATCGGCCTCGACATGC
* * *
67788089 GAGCCAGTGTAAGACCATGTTTGGGACTTGACATCGACATTTATATGAGAGCTAGTGTAAGAACC
1 GAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGACATTTATATGAGAGCTAGTGTAAGAACC
* *
67788154 ATGTATGGGACATGGCATCGGCCTCGGCATGC
66 ATGTCTGGGACATGGCATCGGCCTCGACATGC
* * * * * **
67788186 GGGCTAGTGTAAGACCATGTTTGGAACATGGCATCGACATCGATATATAAGAGCCAGCATAA-AA
1 GAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGACAT--TTATATGAGAGCTAGTGTAAGAA
*
67788250 CCATGTCTGTGACATGGCATCGGC
64 CCATGTCTGGGACATGGCATCGGC
67788274 ATCTTACCCT
Statistics
Matches: 156, Mismatches: 26, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
96 53 0.34
97 64 0.41
98 24 0.15
99 15 0.10
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (97 bp):
GAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGACATTTATATGAGAGCTAGTGTAAGAACC
ATGTCTGGGACATGGCATCGGCCTCGACATGC
Found at i:67792340 original size:49 final size:48
Alignment explanation
Indices: 67792269--67792367 Score: 189
Period size: 49 Copynumber: 2.0 Consensus size: 48
67792259 TCTCAATCTC
67792269 TCTTGTTTTTTTTCTTTTCTTCCTTTCTCCTTCACTGTGCCACCCACG
1 TCTTGTTTTTTTTCTTTTCTTCCTTTCTCCTTCACTGTGCCACCCACG
67792317 TCTTGTTTGTTTTTCTTTTCTTCCTTTCTCCTTCACTGTGCCACCCACG
1 TCTTGTTT-TTTTTCTTTTCTTCCTTTCTCCTTCACTGTGCCACCCACG
67792366 TC
1 TC
67792368 CACCTCTACT
Statistics
Matches: 50, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
48 8 0.16
49 42 0.84
ACGTcount: A:0.06, C:0.33, G:0.09, T:0.52
Consensus pattern (48 bp):
TCTTGTTTTTTTTCTTTTCTTCCTTTCTCCTTCACTGTGCCACCCACG
Found at i:67794330 original size:85 final size:84
Alignment explanation
Indices: 67794201--67794356 Score: 204
Period size: 85 Copynumber: 1.8 Consensus size: 84
67794191 TACCACATCA
* * ** * **
67794201 ATGCCATATCCCAGATATGGTCTTACATGGGATCTCGCATTGATGCCAATAGCCCATCTATGATC
1 ATGCCATATCCCAGATATGGGCTTACACGAAATCTCGCAATGATGCC-ATAGCCCAGATATGATC
67794266 TTACACAAAATAACATATCG
65 TTACACAAAATAACATATCG
* * * *
67794286 ATGCCATATCCTAGATATGGGCTTACACGAAATCTCGTAATGATGCCATATCCCAGATATGGTCT
1 ATGCCATATCCCAGATATGGGCTTACACGAAATCTCGCAATGATGCCATAGCCCAGATATGATCT
67794351 TACACA
66 TACACA
67794357 TAGTCTCGGT
Statistics
Matches: 60, Mismatches: 11, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
84 20 0.33
85 40 0.67
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.28
Consensus pattern (84 bp):
ATGCCATATCCCAGATATGGGCTTACACGAAATCTCGCAATGATGCCATAGCCCAGATATGATCT
TACACAAAATAACATATCG
Found at i:67794364 original size:42 final size:42
Alignment explanation
Indices: 67794201--67794364 Score: 134
Period size: 42 Copynumber: 3.9 Consensus size: 42
67794191 TACCACATCA
**** * *
67794201 ATGCCATATCCCAGATATGGTCTTACATGGGATCTCGCATTG
1 ATGCCATATCCCAGATATGGTCTTACACATAATCTCGTAATG
* ** * * ** *
67794243 ATGCCAATAGCCCATCTATGATCTTACACAAAATAACAT-ATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACATAATCTCGTAAT-G
* *
67794286 ATGCCATATCCTAGATATGGGCTTACACGA-AATCTCGTAATG
1 ATGCCATATCCCAGATATGGTCTTACAC-ATAATCTCGTAATG
*
67794328 ATGCCATATCCCAGATATGGTCTTACACATAGTCTCG
1 ATGCCATATCCCAGATATGGTCTTACACATAATCTCG
67794365 GTAACCCTAA
Statistics
Matches: 92, Mismatches: 25, Indels: 10
0.72 0.20 0.08
Matches are distributed among these distances:
41 1 0.01
42 61 0.66
43 30 0.33
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.29
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACATAATCTCGTAATG
Found at i:67796873 original size:6 final size:6
Alignment explanation
Indices: 67796858--67796921 Score: 76
Period size: 6 Copynumber: 10.5 Consensus size: 6
67796848 TATCAAAACT
* * *
67796858 AGAATC AGAATG AGAATC AGAATT AGAATC AG-ATGAC AAAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
67796907 AGAATC AGAATC AGA
1 AGAATC AGAATC AGA
67796922 CTTAGGTGAT
Statistics
Matches: 49, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
5 2 0.04
6 43 0.88
7 2 0.04
8 2 0.04
ACGTcount: A:0.52, C:0.12, G:0.19, T:0.17
Consensus pattern (6 bp):
AGAATC
Found at i:67796938 original size:37 final size:37
Alignment explanation
Indices: 67796857--67796951 Score: 118
Period size: 37 Copynumber: 2.6 Consensus size: 37
67796847 TTATCAAAAC
* *
67796857 TAGAATCAGAATGAGAATCAGAATTAGAATCAGATGA
1 TAGAATCAGAATCAGAATCAGAATCAGAATCAGATGA
* * * * *
67796894 CAAAATCAGAATCAGAATCAGAATCAGACTTAGGTGA
1 TAGAATCAGAATCAGAATCAGAATCAGAATCAGATGA
*
67796931 TAGAATCAGAATCAGTATCAG
1 TAGAATCAGAATCAGAATCAG
67796952 GTAACAAAAT
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.46, C:0.13, G:0.20, T:0.21
Consensus pattern (37 bp):
TAGAATCAGAATCAGAATCAGAATCAGAATCAGATGA
Found at i:67797889 original size:27 final size:26
Alignment explanation
Indices: 67797859--67798054 Score: 212
Period size: 27 Copynumber: 7.3 Consensus size: 26
67797849 GGGGCAAAAT
* * *
67797859 GGTAATTTTACCCCACGAGGGTATCTC
1 GGTAATTCTACCCTAC-AGGGTATTTC
*
67797886 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACA-GGGTATTTC
*
67797913 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTAC-AGGGTATTTC
*
67797940 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACA-GGGTATTTC
* *
67797967 AGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACA-GGGTATTTC
**
67797994 GGTAATTCTACTTTACAGGGGTATTTC
1 GGTAATTCTACCCTACA-GGGTATTTC
**
67798021 AATAATTCTACCCTACAGCGGTATTTC
1 GGTAATTCTACCCTACAG-GGTATTTC
*
67798048 AGTAATT
1 GGTAATT
67798055 TTACAAATCT
Statistics
Matches: 145, Mismatches: 20, Indels: 8
0.84 0.12 0.05
Matches are distributed among these distances:
26 3 0.02
27 141 0.97
28 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.36
Consensus pattern (26 bp):
GGTAATTCTACCCTACAGGGTATTTC
Found at i:67797934 original size:54 final size:54
Alignment explanation
Indices: 67797860--67798054 Score: 266
Period size: 54 Copynumber: 3.6 Consensus size: 54
67797850 GGGCAAAATG
* * * * *
67797860 GTAATTTTACCCCACGAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
*
67797914 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
* * **
67797968 GTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACTTTACAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
* *
67798022 ATAATTCTACCCTAC-AGCGGTATTTCAGTAATT
1 GTAATTCTACCCTACAAG-GGTATTTCGGTAATT
67798055 TTACAAATCT
Statistics
Matches: 125, Mismatches: 15, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
53 1 0.01
54 124 0.99
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (54 bp):
GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
Found at i:67797999 original size:81 final size:81
Alignment explanation
Indices: 67797877--67798081 Score: 268
Period size: 81 Copynumber: 2.5 Consensus size: 81
67797867 TACCCCACGA
* * * **
67797877 GGGTATCTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACAAGGGTATTTCGG
1 GGGTATTTCAGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACAAGGGTATTTCAA
*
67797942 TAATTCTACCCTATAG
66 TAATTCTACCCTACAG
** *
67797958 GGGTATTTCAGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACTTTACAGGGGTATTTCAA
1 GGGTATTTCAGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACAAGGGTATTTCAA
67798023 TAATTCTACCCTACAG
66 TAATTCTACCCTACAG
* * ** *
67798039 CGGTATTTCAGTAATTTTA-CAAATCTGGGGTATTTTGGTAATT
1 GGGTATTTCAGTAATTCTACCCTA-CAGGGGTATTTTGGTAATT
67798082 TTATAAACCA
Statistics
Matches: 109, Mismatches: 14, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
80 2 0.02
81 107 0.98
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.38
Consensus pattern (81 bp):
GGGTATTTCAGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACAAGGGTATTTCAA
TAATTCTACCCTACAG
Found at i:67798070 original size:27 final size:27
Alignment explanation
Indices: 67798040--67798217 Score: 185
Period size: 27 Copynumber: 6.6 Consensus size: 27
67798030 ACCCTACAGC
** * **
67798040 GGTATTTCAGTAATTTTACAAATCTGG
1 GGTATTTTGGTAATTTTACAAACCAAG
*
67798067 GGTATTTTGGTAATTTTATAAACCAAG
1 GGTATTTTGGTAATTTTACAAACCAAG
* * *
67798094 GTTATTTTAGTAATTTTACAAACCAAT
1 GGTATTTTGGTAATTTTACAAACCAAG
* *
67798121 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCAAG
** *
67798148 GGTATTTTGGTAATTTTGTAAAACAAG
1 GGTATTTTGGTAATTTTACAAACCAAG
* * * *
67798175 GGTATTTTGGAAATTTTACTAATCGAG
1 GGTATTTTGGTAATTTTACAAACCAAG
*
67798202 GTTATTTTGGTAATTT
1 GGTATTTTGGTAATTT
67798218 GCTAAACTAA
Statistics
Matches: 123, Mismatches: 28, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 123 1.00
ACGTcount: A:0.31, C:0.07, G:0.19, T:0.43
Consensus pattern (27 bp):
GGTATTTTGGTAATTTTACAAACCAAG
Found at i:67798100 original size:81 final size:80
Alignment explanation
Indices: 67797927--67798181 Score: 237
Period size: 81 Copynumber: 3.1 Consensus size: 80
67797917 ATTCTACCCT
* * * * ** *
67797927 ACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCAGTAATTCTAC-CCTACAGGGGTAT
1 ACAAGGGTATTTCAGTAATTCTACCCTACAGCGGTATTTCAGTAATTTTACAAAT-CTGGGGTAT
* **
67797991 TTTGGTAATTCTACTTT
65 TTTGGTAATTTTA-TAA
* *
67798008 ACAGGGGTATTTCAATAATTCTACCCTACAGCGGTATTTCAGTAATTTTACAAATCTGGGGTATT
1 ACAAGGGTATTTCAGTAATTCTACCCTACAGCGGTATTTCAGTAATTTTACAAATCTGGGGTATT
67798073 TTGGTAATTTTATAA
66 TTGGTAATTTTATAA
* * * ** ** **
67798088 ACCAAGGTTATTTTAGTAATTTTA-CAAACCAATGGTATTTTGGTAATTTTACAAA-CTAGGGGT
1 A-CAAGGGTATTTCAGTAATTCTACCCTA-CAGCGGTATTTCAGTAATTTTACAAATCT-GGGGT
*
67798151 ATTTTGGTAATTTTGTAAA
63 ATTTTGGTAATTTTAT-AA
67798170 ACAAGGGTATTT
1 ACAAGGGTATTT
67798182 TGGAAATTTT
Statistics
Matches: 144, Mismatches: 25, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
80 6 0.04
81 134 0.93
82 4 0.03
ACGTcount: A:0.29, C:0.13, G:0.18, T:0.39
Consensus pattern (80 bp):
ACAAGGGTATTTCAGTAATTCTACCCTACAGCGGTATTTCAGTAATTTTACAAATCTGGGGTATT
TTGGTAATTTTATAA
Found at i:67798226 original size:81 final size:81
Alignment explanation
Indices: 67798040--67798217 Score: 234
Period size: 81 Copynumber: 2.2 Consensus size: 81
67798030 ACCCTACAGC
** * *
67798040 GGTATTTCAGTAATTTTACAAATCT-GGGGTATTTTGGTAATTTTATAAACCAAGGTTATTTTAG
1 GGTATTTTGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTATAAAACAAGGGTATTTTAG
*
67798104 TAATTTTACAAACCAAT
65 AAATTTTACAAACCAAT
* *
67798121 GGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAAACAAGGGTATTTTGGA
1 GGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAAACAAGGGTATTTTAGA
* * *
67798186 AATTTTACTAATCGA-
66 AATTTTACAAACCAAT
67798201 GGTTATTTTGGTAATTT
1 GG-TATTTTGGTAATTT
67798218 GCTAAACTAA
Statistics
Matches: 85, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
80 4 0.05
81 81 0.95
ACGTcount: A:0.31, C:0.07, G:0.19, T:0.43
Consensus pattern (81 bp):
GGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAAACAAGGGTATTTTAGA
AATTTTACAAACCAAT
Found at i:67800367 original size:6 final size:6
Alignment explanation
Indices: 67800337--67800455 Score: 75
Period size: 6 Copynumber: 19.3 Consensus size: 6
67800327 AAGAAACGTT
* * *
67800337 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAGGTA A-CAAA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
* * * *
67800386 ATCAGA ATCAGA ATCAGA CTTAGGTG AT-AGA ATCAGA ATCAGT ATCAGGTA
1 ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCA-G-A
*
67800437 A-CAGA ATCAGA ATTAGA AT
1 ATCAGA ATCAGA ATCAGA AT
67800456 ATGAATGCAA
Statistics
Matches: 88, Mismatches: 14, Indels: 22
0.71 0.11 0.18
Matches are distributed among these distances:
5 7 0.08
6 68 0.77
7 9 0.10
8 4 0.05
ACGTcount: A:0.48, C:0.13, G:0.18, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:67800393 original size:31 final size:31
Alignment explanation
Indices: 67800351--67800455 Score: 105
Period size: 31 Copynumber: 3.6 Consensus size: 31
67800341 GAACTAGAAT
*
67800351 CAAAATGAGAATCAGAATCAGAATCAGGTAA
1 CAAAATCAGAATCAGAATCAGAATCAGGTAA
* *
67800382 CAAAATCAGAATCAGAATCAGACTTAGGT--
1 CAAAATCAGAATCAGAATCAGAATCAGGTAA
* *
67800411 ---GAT-AGAATCAGAATCAGTATCAGGTAA
1 CAAAATCAGAATCAGAATCAGAATCAGGTAA
* *
67800438 CAGAATCAGAATTAGAAT
1 CAAAATCAGAATCAGAAT
67800456 ATGAATGCAA
Statistics
Matches: 59, Mismatches: 9, Indels: 12
0.74 0.11 0.15
Matches are distributed among these distances:
25 19 0.32
26 2 0.03
30 2 0.03
31 36 0.61
ACGTcount: A:0.48, C:0.13, G:0.19, T:0.20
Consensus pattern (31 bp):
CAAAATCAGAATCAGAATCAGAATCAGGTAA
Found at i:67800417 original size:25 final size:25
Alignment explanation
Indices: 67800363--67800449 Score: 81
Period size: 25 Copynumber: 3.5 Consensus size: 25
67800353 AAATGAGAAT
* *
67800363 CAGAATCAGAATCAGGTAACA--AAA
1 CAGAATCAGAATCA-GTATCAGGTAA
* *
67800387 TCAGAATCAGAATCAG-ACTTAGGTGA
1 -CAGAATCAGAATCAGTA-TCAGGTAA
*
67800413 TAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGTATCAGGTAA
67800438 CAGAATCAGAAT
1 CAGAATCAGAAT
67800450 TAGAATATGA
Statistics
Matches: 50, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
23 1 0.02
24 2 0.04
25 45 0.90
26 2 0.04
ACGTcount: A:0.46, C:0.15, G:0.20, T:0.20
Consensus pattern (25 bp):
CAGAATCAGAATCAGTATCAGGTAA
Found at i:67800645 original size:33 final size:32
Alignment explanation
Indices: 67800594--67800657 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
67800584 ACGAAGTCAC
* *
67800594 CAGATACAAATATTGTGGCTAGGCCACCAGAA
1 CAGATACAAATATTGTGGCGAAGCCACCAGAA
* *
67800626 CAGATATATATATATGTGGCGAAGCCACCAGA
1 CAGATACAAATAT-TGTGGCGAAGCCACCAGA
67800658 TTGCAGCGAG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.38, C:0.20, G:0.22, T:0.20
Consensus pattern (32 bp):
CAGATACAAATATTGTGGCGAAGCCACCAGAA
Found at i:67801392 original size:27 final size:27
Alignment explanation
Indices: 67801372--67801566 Score: 230
Period size: 27 Copynumber: 7.2 Consensus size: 27
67801362 GGGTATCTCG
*
67801372 GTAATTCTATCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTTA
* * *
67801399 GTAATTCTACCCTATAAGGGTATTTTG
1 GTAATTCTACCCTACAGGGGTATTTTA
* *
67801426 GTAATCCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTTA
* *
67801453 GTAATTCTACCATACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTTA
* * *
67801480 GTAATTTTACCTTATAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTTA
*
67801507 GTAATTCTACCCTACAGGGGTATTTTG
1 GTAATTCTACCCTACAGGGGTATTTTA
* ** *
67801534 GTAATTTTA-CAAATCAGGGGTATTTTG
1 GTAATTCTACCCTA-CAGGGGTATTTTA
67801561 GTAATT
1 GTAATT
67801567 TTAAAAACTA
Statistics
Matches: 145, Mismatches: 22, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
26 2 0.01
27 143 0.99
ACGTcount: A:0.27, C:0.15, G:0.19, T:0.39
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTTA
Found at i:67801419 original size:54 final size:53
Alignment explanation
Indices: 67801345--67801566 Score: 237
Period size: 54 Copynumber: 4.1 Consensus size: 53
67801335 GGGCAAAATG
* * * *
67801345 GTAATTTTACCCCACGAGGGTATCTCGGTAATTCTATCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTA-CCTACAGGGGTATTTTA
* * * *
67801399 GTAATTCTACCCTATAAGGGTATTTTGGTAATCCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTA-CCTACAGGGGTATTTTA
* * * * *
67801453 GTAATTCTACCATACAGGGGTATTTCAGTAATTTTACCTTATAGGGGTATTTTA
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACC-TACAGGGGTATTTTA
* * * ** *
67801507 GTAATTCTACCCTACAGGGGTATTTTGGTAATTTTACAAATCAGGGGTATTTTG
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCTA-CAGGGGTATTTTA
67801561 GTAATT
1 GTAATT
67801567 TTAAAAACTA
Statistics
Matches: 141, Mismatches: 25, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
53 3 0.02
54 138 0.98
ACGTcount: A:0.26, C:0.16, G:0.20, T:0.38
Consensus pattern (53 bp):
GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCTACAGGGGTATTTTA
Found at i:67801483 original size:81 final size:81
Alignment explanation
Indices: 67801362--67801558 Score: 263
Period size: 81 Copynumber: 2.4 Consensus size: 81
67801352 TACCCCACGA
* * *
67801362 GGGTATCTCGGTAATTCTATCC-TACAGGGGTATTTTAGTAATTCTACCCTATAAGGGTATTTTG
1 GGGTATTTCGGTAATTCTA-CCATACAGGGGTATTTCAGTAATTCTACCCTATAAGGGTATTTTA
67801426 GTAATCCTACCCTACAG
65 GTAATCCTACCCTACAG
* * * *
67801443 GGGTATTTCAGTAATTCTACCATACAGGGGTATTTCAGTAATTTTACCTTATAGGGGTATTTTAG
1 GGGTATTTCGGTAATTCTACCATACAGGGGTATTTCAGTAATTCTACCCTATAAGGGTATTTTAG
*
67801508 TAATTCTACCCTACAG
66 TAATCCTACCCTACAG
* * *
67801524 GGGTATTTTGGTAATTTTA-CAAATCAGGGGTATTT
1 GGGTATTTCGGTAATTCTACCATA-CAGGGGTATTT
67801559 TGGTAATTTT
Statistics
Matches: 102, Mismatches: 12, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
80 5 0.05
81 97 0.95
ACGTcount: A:0.26, C:0.16, G:0.20, T:0.38
Consensus pattern (81 bp):
GGGTATTTCGGTAATTCTACCATACAGGGGTATTTCAGTAATTCTACCCTATAAGGGTATTTTAG
TAATCCTACCCTACAG
Found at i:67801567 original size:27 final size:27
Alignment explanation
Indices: 67801440--67801729 Score: 214
Period size: 27 Copynumber: 10.7 Consensus size: 27
67801430 TCCTACCCTA
** * *
67801440 CAGGGGTATTTCAGTAATTCTAC-CAT
1 CAGGGGTATTTTGGTAATTTTACAAAT
** **
67801466 ACAGGGGTATTTCAGTAATTTTACCTTAT
1 -CAGGGGTATTTTGGTAATTTTA-CAAAT
* * **
67801495 -AGGGGTATTTTAGTAATTCTAC-CCT
1 CAGGGGTATTTTGGTAATTTTACAAAT
67801520 ACAGGGGTATTTTGGTAATTTTACAAAT
1 -CAGGGGTATTTTGGTAATTTTACAAAT
*
67801548 CAGGGGTATTTTGGTAATTTTA-AAAA
1 CAGGGGTATTTTGGTAATTTTACAAAT
* *
67801574 CTAGGGGTATTTTGGTAATTTTATAAAC
1 C-AGGGGTATTTTGGTAATTTTACAAAT
* * * * *
67801602 CAAGAGTATTTTAGTAATTTTATAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAT
**
67801629 CAATGGTATTTTGGTAATTTTACAAA-
1 CAGGGGTATTTTGGTAATTTTACAAAT
* ** *
67801655 CTAGGGGTGTTTTGGTAATTTTGTAAAC
1 C-AGGGGTATTTTGGTAATTTTACAAAT
** * *
67801683 CAATGGTATTTTGGTAATTTTGCTAAT
1 CAGGGGTATTTTGGTAATTTTACAAAT
67801710 C-GAGGGTATTTTGGTAATTT
1 CAG-GGGTATTTTGGTAATTT
67801730 GGTAAACTAA
Statistics
Matches: 221, Mismatches: 32, Indels: 20
0.81 0.12 0.07
Matches are distributed among these distances:
25 1 0.00
26 6 0.03
27 205 0.93
28 7 0.03
29 2 0.01
ACGTcount: A:0.29, C:0.09, G:0.20, T:0.41
Consensus pattern (27 bp):
CAGGGGTATTTTGGTAATTTTACAAAT
Found at i:67801579 original size:81 final size:81
Alignment explanation
Indices: 67801416--67801674 Score: 272
Period size: 81 Copynumber: 3.2 Consensus size: 81
67801406 TACCCTATAA
* * * * **
67801416 GGGTATTTTGGTAATCCTACCCTACAGGGGTATTTCAGTAATTCTAC-CATACAGGGGTATTTCA
1 GGGTATTTTGGTAATTCTACCCTACAGGGGTATTTTAGTAATTTTACAAAT-CAGGGGTATTTTG
**
67801480 GTAATTTTACCTTA-TAG
65 GTAATTTTA-CAAACTAG
* *
67801497 GGGTATTTTAGTAATTCTACCCTACAGGGGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGG
1 GGGTATTTTGGTAATTCTACCCTACAGGGGTATTTTAGTAATTTTACAAATCAGGGGTATTTTGG
*
67801562 TAATTTTAAAAACTAG
66 TAATTTTACAAACTAG
* *** * * * * **
67801578 GGGTATTTTGGTAATTTTA-TAAACCAAGAGTATTTTAGTAATTTTATAAACCAATGGTATTTTG
1 GGGTATTTTGGTAATTCTACCCTA-CAGGGGTATTTTAGTAATTTTACAAATCAGGGGTATTTTG
67801642 GTAATTTTACAAACTAG
65 GTAATTTTACAAACTAG
*
67801659 GGGTGTTTTGGTAATT
1 GGGTATTTTGGTAATT
67801675 TTGTAAACCA
Statistics
Matches: 150, Mismatches: 25, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
80 2 0.01
81 146 0.97
82 2 0.01
ACGTcount: A:0.29, C:0.11, G:0.20, T:0.40
Consensus pattern (81 bp):
GGGTATTTTGGTAATTCTACCCTACAGGGGTATTTTAGTAATTTTACAAATCAGGGGTATTTTGG
TAATTTTACAAACTAG
Found at i:67801580 original size:54 final size:54
Alignment explanation
Indices: 67801524--67801729 Score: 254
Period size: 54 Copynumber: 3.8 Consensus size: 54
67801514 TACCCTACAG
* * *
67801524 GGGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTAAAAACTAG
1 GGGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTATAAACCAA
* * * * *
67801578 GGGTATTTTGGTAATTTTATAAACCAAGAGTATTTTAGTAATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTATAAACCAA
* * *
67801632 TGGTATTTTGGTAATTTTACAAA-CTAGGGGTGTTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAATC-AGGGGTATTTTGGTAATTTTATAAACCAA
* * *
67801686 TGGTATTTTGGTAATTTTGCTAATC-GAGGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTTTACAAATCAG-GGGTATTTTGGTAATTT
67801730 GGTAAACTAA
Statistics
Matches: 131, Mismatches: 18, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
53 2 0.02
54 128 0.98
55 1 0.01
ACGTcount: A:0.30, C:0.06, G:0.21, T:0.43
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTATAAACCAA
Found at i:67801675 original size:81 final size:81
Alignment explanation
Indices: 67801525--67801729 Score: 288
Period size: 81 Copynumber: 2.5 Consensus size: 81
67801515 ACCCTACAGG
* *
67801525 GGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTAAAAACTAGGGGTATTTTGGT
1 GGTATTTTGGTAATTTTATAAATCAAGGGTATTTTGGTAATTTTAAAAACTAGGGGTATTTTGGT
67801590 AATTTTATAAACCAA-
66 AATTTTATAAACCAAT
* * * * *
67801605 GAGTATTTTAGTAATTTTATAAACCAATGGTATTTTGGTAATTTTACAAACTAGGGGTGTTTTGG
1 G-GTATTTTGGTAATTTTATAAATCAAGGGTATTTTGGTAATTTTAAAAACTAGGGGTATTTTGG
*
67801670 TAATTTTGTAAACCAAT
65 TAATTTTATAAACCAAT
* *
67801687 GGTATTTTGGTAATTTTGCT-AATCGAGGGTATTTTGGTAATTT
1 GGTATTTTGGTAATTTT-ATAAATCAAGGGTATTTTGGTAATTT
67801730 GGTAAACTAA
Statistics
Matches: 109, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
80 1 0.01
81 106 0.97
82 2 0.02
ACGTcount: A:0.30, C:0.06, G:0.20, T:0.43
Consensus pattern (81 bp):
GGTATTTTGGTAATTTTATAAATCAAGGGTATTTTGGTAATTTTAAAAACTAGGGGTATTTTGGT
AATTTTATAAACCAAT
Found at i:67805439 original size:27 final size:26
Alignment explanation
Indices: 67805408--67805502 Score: 91
Period size: 27 Copynumber: 3.5 Consensus size: 26
67805398 GTGAAATAAC
67805408 CGTAATGCCCTTATAGGGTAAAATGA
1 CGTAATGCCCTTATAGGGTAAAATGA
* * *
67805434 CTGTAATGCCCATGTAGGGTAAAATTA
1 C-GTAATGCCCTTATAGGGTAAAATGA
* ** *
67805461 CCGTAATACCCTCGTATGGTAAAATGA
1 -CGTAATGCCCTTATAGGGTAAAATGA
*
67805488 CGATTATGCCCTTAT
1 CG-TAATGCCCTTAT
67805503 GTTCCATATG
Statistics
Matches: 54, Mismatches: 12, Indels: 5
0.76 0.17 0.07
Matches are distributed among these distances:
26 3 0.06
27 50 0.93
28 1 0.02
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29
Consensus pattern (26 bp):
CGTAATGCCCTTATAGGGTAAAATGA
Found at i:67805942 original size:33 final size:33
Alignment explanation
Indices: 67805849--67805949 Score: 139
Period size: 33 Copynumber: 3.0 Consensus size: 33
67805839 CCCACACTAC
* *
67805849 TACTGTATAGGGCTAAGGCCCAGTCTGCACTGA
1 TACTGTATAGGGCTAAGGCCCAGACTGTACTGA
*
67805882 TACTGTATAGGGCTAAGGCCCAGACTGTATTGA
1 TACTGTATAGGGCTAAGGCCCAGACTGTACTGA
* **
67805915 TACTGAATAGGGCTCGGGCCCAGACTGTTACTGA
1 TACTGTATAGGGCTAAGGCCCAGACTG-TACTGA
67805949 T
1 T
67805950 TTGGGCTTAA
Statistics
Matches: 60, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
33 54 0.90
34 6 0.10
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (33 bp):
TACTGTATAGGGCTAAGGCCCAGACTGTACTGA
Found at i:67805955 original size:28 final size:28
Alignment explanation
Indices: 67805915--67805970 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
67805905 ACTGTATTGA
**
67805915 TACTGAATAGGGCTCGGGCCCAGACTGT
1 TACTGAATAGGGCTCAAGCCCAGACTGT
* * *
67805943 TACTGATTTGGGCTTAAGCCCAGACTGT
1 TACTGAATAGGGCTCAAGCCCAGACTGT
67805971 GTTATTCACT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.21, C:0.23, G:0.29, T:0.27
Consensus pattern (28 bp):
TACTGAATAGGGCTCAAGCCCAGACTGT
Found at i:67812594 original size:27 final size:27
Alignment explanation
Indices: 67812564--67812741 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 27
67812554 ATATTGAGCC
* * *
67812564 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACACAATCAAAT
* **
67812591 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACACAATCAAAT
* * * *
67812618 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACACAATCA-AAT
** *** *
67812646 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACACAATCAAAT
* * **
67812673 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAAAT
* * * *
67812700 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTACACAATCAAAT
67812727 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
67812742 GTACAATTTA
Statistics
Matches: 123, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 23 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACACAATCAAAT
Found at i:67812657 original size:55 final size:55
Alignment explanation
Indices: 67812564--67812741 Score: 204
Period size: 54 Copynumber: 3.3 Consensus size: 55
67812554 ATATTGAGCC
* * *
67812564 CGCACACTCAGTGCTATACA-A-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAT-CATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
67812618 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * *
67812673 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
67812727 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
67812742 GTACAATTTA
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 56 0.54
55 45 0.43
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:67812703 original size:82 final size:81
Alignment explanation
Indices: 67812585--67812740 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
67812575 TGCTATACAA
* * *
67812585 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGCA
67812650 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
67812667 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCA
67812731 CACTTAGTGC
65 CACTTAGTGC
67812741 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:67817690 original size:28 final size:28
Alignment explanation
Indices: 67817643--67817696 Score: 67
Period size: 28 Copynumber: 1.9 Consensus size: 28
67817633 TTTGTCAATT
*
67817643 TCACATATTCAACTTCTATAACCATTCA
1 TCACATATTCAACTTCTATAAACATTCA
67817671 TCACA-ATTCAA-TATCATATAAACATT
1 TCACATATTCAACT-TC-TATAAACATT
67817697 AATAAATCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
26 1 0.04
27 8 0.35
28 14 0.61
ACGTcount: A:0.41, C:0.24, G:0.00, T:0.35
Consensus pattern (28 bp):
TCACATATTCAACTTCTATAAACATTCA
Found at i:67825141 original size:38 final size:38
Alignment explanation
Indices: 67824972--67825132 Score: 223
Period size: 38 Copynumber: 4.2 Consensus size: 38
67824962 GAATCCAGTC
* * * *
67824972 ACCAGCACAAAACCTGTGGGACTTTAAGCTCGAATATAAT
1 ACCAGCACGAAGCCTGCGGGA-TTTAA-CCCGAATATAAT
* *
67825012 ACCAGCACTAAGCCTGCGAGATTTAACCCGAATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGAATATAAT
*
67825050 ACTAGCACGAAGCCTGCGGGATTTAACCCGAATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGAATATAAT
*
67825088 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGAATATAAT
*
67825126 ACTAGCA
1 ACCAGCA
67825133 TATAGCCTGT
Statistics
Matches: 110, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
38 88 0.80
39 5 0.05
40 17 0.15
ACGTcount: A:0.35, C:0.25, G:0.19, T:0.20
Consensus pattern (38 bp):
ACCAGCACGAAGCCTGCGGGATTTAACCCGAATATAAT
Found at i:67827975 original size:738 final size:738
Alignment explanation
Indices: 67826558--67828035 Score: 2956
Period size: 738 Copynumber: 2.0 Consensus size: 738
67826548 CATAATAATT
67826558 TCACCTATGCATAACATTACTCACATTCCATTACTTGCATTATTCAAAATCATACCCTTAAAAAT
1 TCACCTATGCATAACATTACTCACATTCCATTACTTGCATTATTCAAAATCATACCCTTAAAAAT
67826623 CATGTACAATGCCGAACCCTTAGATATTCAACCATCTAATTTATTCATTTCAAATCAATCAAACG
66 CATGTACAATGCCGAACCCTTAGATATTCAACCATCTAATTTATTCATTTCAAATCAATCAAACG
67826688 GCATTTTCTCACATTTTAGCATTTAAATACAAAACACTTGTTCAAGTCATTAAGCAAGTCCAAGT
131 GCATTTTCTCACATTTTAGCATTTAAATACAAAACACTTGTTCAAGTCATTAAGCAAGTCCAAGT
67826753 TCGACTATTACACATATAAGTACTAGCAATTTAAATTTTTAACTAGCTCAAACTTCTTTCATCAA
196 TCGACTATTACACATATAAGTACTAGCAATTTAAATTTTTAACTAGCTCAAACTTCTTTCATCAA
67826818 CAATTTTTCATCAAAACATAAAGGCAATAATCCAATCCCTTCCTTATCTACCATAACCGAATGCT
261 CAATTTTTCATCAAAACATAAAGGCAATAATCCAATCCCTTCCTTATCTACCATAACCGAATGCT
67826883 CAATTTATCACCCAAAATTCAAAGTTTTGACATGGGCTAAGTAAGAAACTTGATAATTAACTTAA
326 CAATTTATCACCCAAAATTCAAAGTTTTGACATGGGCTAAGTAAGAAACTTGATAATTAACTTAA
67826948 AACAAGCTAAATTTCAAAAATCTAACATAATTTACTAACCTTCCTCAAGCTTAAAATGACCGAAT
391 AACAAGCTAAATTTCAAAAATCTAACATAATTTACTAACCTTCCTCAAGCTTAAAATGACCGAAT
67827013 GTCTTGCCCCCTTTTTTTTTCTTCCAAATTTGACTAAGAAGAACAAAGATGAAACTTTGTTTTCT
456 GTCTTGCCCCCTTTTTTTTTCTTCCAAATTTGACTAAGAAGAACAAAGATGAAACTTTGTTTTCT
67827078 TCACCCCTTTTTATTTTATTTTATTATATTCATCAATATTATAAAATACAAAGCCATTTAGTTGC
521 TCACCCCTTTTTATTTTATTTTATTATATTCATCAATATTATAAAATACAAAGCCATTTAGTTGC
67827143 CATTAAACTAATAAATAATACATATATTTTATATTAAACATCAACATGGCCGGCCACTACATTAA
586 CATTAAACTAATAAATAATACATATATTTTATATTAAACATCAACATGGCCGGCCACTACATTAA
67827208 AAATGGATAATTTGACATGCCAGTCCATTCTTTTTATATCATGCATTAATAGACCATTTTTAAAT
651 AAATGGATAATTTGACATGCCAGTCCATTCTTTTTATATCATGCATTAATAGACCATTTTTAAAT
67827273 TAACCTATCACATTTCAAAAATG
716 TAACCTATCACATTTCAAAAATG
67827296 TCACCTATGCATAACATTACTCACATTCCATTACTTGCATTATTCAAAATCATACCCTTAAAAAT
1 TCACCTATGCATAACATTACTCACATTCCATTACTTGCATTATTCAAAATCATACCCTTAAAAAT
67827361 CATGTACAATGCCGAACCCTTAGATATTCAACCATCTAATTTATTCATTTCAAATCAATCAAACG
66 CATGTACAATGCCGAACCCTTAGATATTCAACCATCTAATTTATTCATTTCAAATCAATCAAACG
67827426 GCATTTTCTCACATTTTAGCATTTAAATACAAAACACTTGTTCAAGTCATTAAGCAAGTCCAAGT
131 GCATTTTCTCACATTTTAGCATTTAAATACAAAACACTTGTTCAAGTCATTAAGCAAGTCCAAGT
67827491 TCGACTATTACACATATAAGTACTAGCAATTTAAATTTTTAACTAGCTCAAACTTCTTTCATCAA
196 TCGACTATTACACATATAAGTACTAGCAATTTAAATTTTTAACTAGCTCAAACTTCTTTCATCAA
67827556 CAATTTTTCATCAAAACATAAAGGCAATAATCCAATCCCTTCCTTATCTACCATAACCGAATGCT
261 CAATTTTTCATCAAAACATAAAGGCAATAATCCAATCCCTTCCTTATCTACCATAACCGAATGCT
67827621 CAATTTATCACCCAAAATTCAAAGTTTTGACATGGGCTAAGTAAGAAACTTGATAATTAACTTAA
326 CAATTTATCACCCAAAATTCAAAGTTTTGACATGGGCTAAGTAAGAAACTTGATAATTAACTTAA
67827686 AACAAGCTAAATTTCAAAAATCTAACATAATTTACTAACCTTCCTCAAGCTTAAAATGACCGAAT
391 AACAAGCTAAATTTCAAAAATCTAACATAATTTACTAACCTTCCTCAAGCTTAAAATGACCGAAT
67827751 GTCTTGCCCCCTTTTTTTTTCTTCCAAATTTGACTAAGAAGAACAAAGATGAAACTTTGTTTTCT
456 GTCTTGCCCCCTTTTTTTTTCTTCCAAATTTGACTAAGAAGAACAAAGATGAAACTTTGTTTTCT
67827816 TCACCCCTTTTTATTTTATTTTATTATATTCATCAATATTATAAAATACAAAGCCATTTAGTTGC
521 TCACCCCTTTTTATTTTATTTTATTATATTCATCAATATTATAAAATACAAAGCCATTTAGTTGC
67827881 CATTAAACTAATAAATAATACATATATTTTATATTAAACATCAACATGGCCGGCCACTACATTAA
586 CATTAAACTAATAAATAATACATATATTTTATATTAAACATCAACATGGCCGGCCACTACATTAA
67827946 AAATGGATAATTTGACATGCCAGTCCATTCTTTTTATATCATGCATTAATAGACCATTTTTAAAT
651 AAATGGATAATTTGACATGCCAGTCCATTCTTTTTATATCATGCATTAATAGACCATTTTTAAAT
67828011 TAACCTATCACATTTCAAAAATG
716 TAACCTATCACATTTCAAAAATG
67828034 TC
1 TC
67828036 TCACATATGT
Statistics
Matches: 740, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
738 740 1.00
ACGTcount: A:0.37, C:0.21, G:0.08, T:0.35
Consensus pattern (738 bp):
TCACCTATGCATAACATTACTCACATTCCATTACTTGCATTATTCAAAATCATACCCTTAAAAAT
CATGTACAATGCCGAACCCTTAGATATTCAACCATCTAATTTATTCATTTCAAATCAATCAAACG
GCATTTTCTCACATTTTAGCATTTAAATACAAAACACTTGTTCAAGTCATTAAGCAAGTCCAAGT
TCGACTATTACACATATAAGTACTAGCAATTTAAATTTTTAACTAGCTCAAACTTCTTTCATCAA
CAATTTTTCATCAAAACATAAAGGCAATAATCCAATCCCTTCCTTATCTACCATAACCGAATGCT
CAATTTATCACCCAAAATTCAAAGTTTTGACATGGGCTAAGTAAGAAACTTGATAATTAACTTAA
AACAAGCTAAATTTCAAAAATCTAACATAATTTACTAACCTTCCTCAAGCTTAAAATGACCGAAT
GTCTTGCCCCCTTTTTTTTTCTTCCAAATTTGACTAAGAAGAACAAAGATGAAACTTTGTTTTCT
TCACCCCTTTTTATTTTATTTTATTATATTCATCAATATTATAAAATACAAAGCCATTTAGTTGC
CATTAAACTAATAAATAATACATATATTTTATATTAAACATCAACATGGCCGGCCACTACATTAA
AAATGGATAATTTGACATGCCAGTCCATTCTTTTTATATCATGCATTAATAGACCATTTTTAAAT
TAACCTATCACATTTCAAAAATG
Found at i:67831976 original size:44 final size:44
Alignment explanation
Indices: 67831868--67831998 Score: 126
Period size: 44 Copynumber: 3.0 Consensus size: 44
67831858 TTACATGTAA
* * * * *
67831868 TCAAATATCGATGCC-ACTGTCCCAAATAGGGTCCTACAC-AAA-A
1 TCAAATA-CGATGCCAAC-GTCCCAGACATGGTCTTACACGAAATC
* * *
67831911 TCAAATACGATGCCGATGTCCCAGTCATGGTCTTACACGTAAATC
1 TCAAATACGATGCCAACGTCCCAGACATGGTCTTACACG-AAATC
*
67831956 TCAAAT-CGATGCCAACGTCCCAGACTTGGTCTTACACGAAATC
1 TCAAATACGATGCCAACGTCCCAGACATGGTCTTACACGAAATC
67831999 ACATATATGA
Statistics
Matches: 73, Mismatches: 11, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
42 23 0.32
43 13 0.18
44 31 0.42
45 6 0.08
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.24
Consensus pattern (44 bp):
TCAAATACGATGCCAACGTCCCAGACATGGTCTTACACGAAATC
Found at i:67840712 original size:37 final size:37
Alignment explanation
Indices: 67840662--67840735 Score: 91
Period size: 37 Copynumber: 2.0 Consensus size: 37
67840652 GATCGATGTC
*
67840662 GTTGTAATTAGCCAAATG-TAT-TGGCTTATAATGATTT
1 GTTGTAATTAGCC--ATGAGATGTGGCTTATAATGATTT
67840699 GTTGT-ATGTAGCCATGAGATGTGGCTTATAATGATTT
1 GTTGTAAT-TAGCCATGAGATGTGGCTTATAATGATTT
67840736 TGGCTTGTAA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
35 3 0.09
36 4 0.12
37 26 0.79
ACGTcount: A:0.27, C:0.08, G:0.23, T:0.42
Consensus pattern (37 bp):
GTTGTAATTAGCCATGAGATGTGGCTTATAATGATTT
Found at i:67848648 original size:40 final size:40
Alignment explanation
Indices: 67848604--67848715 Score: 147
Period size: 40 Copynumber: 2.8 Consensus size: 40
67848594 GTTTCAAAAC
67848604 AGCTTCGGCTATAAATAGCACTTAGTGTGCGAATTGGAAT
1 AGCTTCGGCTATAAATAGCACTTAGTGTGCGAATTGGAAT
** * *
67848644 AGCTTCGGCTATAAATAGCACTTAGCATGCAAATTGTAAT
1 AGCTTCGGCTATAAATAGCACTTAGTGTGCGAATTGGAAT
*
67848684 AGCTTCGTCTAT--ATGAGGCACTTAGTGTGCGA
1 AGCTTCGGCTATAAAT-A-GCACTTAGTGTGCGA
67848716 TATAGAGATA
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
38 2 0.03
39 1 0.02
40 59 0.95
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.30
Consensus pattern (40 bp):
AGCTTCGGCTATAAATAGCACTTAGTGTGCGAATTGGAAT
Found at i:67850474 original size:28 final size:28
Alignment explanation
Indices: 67850440--67850496 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
67850430 ATATCATATA
67850440 CCAAAGACAAATCAAATATGACCATTAT
1 CCAAAGACAAATCAAATATGACCATTAT
67850468 CCAAAGACAAATCAAATATGACCATTAT
1 CCAAAGACAAATCAAATATGACCATTAT
67850496 C
1 C
67850497 ATTAATTACC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.49, C:0.23, G:0.07, T:0.21
Consensus pattern (28 bp):
CCAAAGACAAATCAAATATGACCATTAT
Found at i:67850500 original size:34 final size:32
Alignment explanation
Indices: 67850431--67850489 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 32
67850421 AATTACCAAA
67850431 TATCA-TATACCAAAGACAAATCAAATATGAC
1 TATCATTATACCAAAGACAAATCAAATATGAC
67850462 ---CATTAT-CCAAAGACAAATCAAATATGAC
1 TATCATTATACCAAAGACAAATCAAATATGAC
67850490 CATTATCATT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
28 24 0.89
29 3 0.11
ACGTcount: A:0.51, C:0.20, G:0.07, T:0.22
Consensus pattern (32 bp):
TATCATTATACCAAAGACAAATCAAATATGAC
Found at i:67851595 original size:42 final size:42
Alignment explanation
Indices: 67851535--67851625 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
67851525 CACACCAGAG
67851535 GCATCAAAGATACGTAACAGAGGCACCGAAGTGCAAATAGAA
1 GCATCAAAGATACGTAACAGAGGCACCGAAGTGCAAATAGAA
* * *
67851577 GCATCAAAGAT-GGTTAACAGAGGCACTGAAGTGCAAATAGAG
1 GCATCAAAGATACG-TAACAGAGGCACCGAAGTGCAAATAGAA
67851619 GCATCAA
1 GCATCAA
67851626 CATGCGATCC
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
41 1 0.02
42 44 0.98
ACGTcount: A:0.43, C:0.18, G:0.25, T:0.14
Consensus pattern (42 bp):
GCATCAAAGATACGTAACAGAGGCACCGAAGTGCAAATAGAA
Found at i:67852651 original size:16 final size:16
Alignment explanation
Indices: 67852632--67852678 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
67852622 TTTATGTTTT
67852632 CTTATTTTTAACTTTA
1 CTTATTTTTAACTTTA
*
67852648 CTTATTTTATTACTTTA
1 CTTATTTT-TAACTTTA
67852665 -TTATTATTTAACTT
1 CTTATT-TTTAACTT
67852679 ATAATATAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
16 18 0.67
17 9 0.33
ACGTcount: A:0.26, C:0.11, G:0.00, T:0.64
Consensus pattern (16 bp):
CTTATTTTTAACTTTA
Found at i:67854944 original size:46 final size:46
Alignment explanation
Indices: 67854862--67855086 Score: 190
Period size: 47 Copynumber: 4.8 Consensus size: 46
67854852 ACCACATTAT
*
67854862 GAGAGCCAGTGTAAGACCATGTCTGGGA-ATGGCATCGGCATTGAGAC
1 GAGAGCCAGTGTAAGA-CATGTCTGGGACATGGCATCGGC-TCGAGAC
* *
67854909 GAGAGCTAGTGTAAGACATGTTTGGGACAT-GCATCGGCCTCGAGAC
1 GAGAGCCAGTGTAAGACATGTCTGGGACATGGCATCGG-CTCGAGAC
* * * *
67854955 GTA-AGCCAGTGTAAAACATGTCT-AGACAT-GCATCGGCTACAAGAT
1 G-AGAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCT-CGAGAC
* * * * * * *
67855000 GATAGTCATTGTAAGACTATGTCTGGAACATGGCATCGACTTGAGAT
1 GAGAGCCAGTGTAAGAC-ATGTCTGGGACATGGCATCGGCTCGAGAC
* * * *
67855047 GTGAGCCAATGTAAGACAATGTTTGGAACATGGCATCGGC
1 GAGAGCCAGTGTAAGAC-ATGTCTGGGACATGGCATCGGC
67855087 ACATTACCCA
Statistics
Matches: 146, Mismatches: 24, Indels: 16
0.78 0.13 0.09
Matches are distributed among these distances:
44 3 0.02
45 28 0.19
46 47 0.32
47 60 0.41
48 8 0.05
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.23
Consensus pattern (46 bp):
GAGAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCTCGAGAC
Found at i:67856233 original size:21 final size:21
Alignment explanation
Indices: 67856209--67856268 Score: 77
Period size: 21 Copynumber: 2.9 Consensus size: 21
67856199 CCGAGTCGAT
*
67856209 CACACGGGCGTGTTGCCTTTC
1 CACACGGGCGTGTTGCCCTTC
67856230 CACACGGGCGTGTTGCCCTTC
1 CACACGGGCGTGTTGCCCTTC
* **
67856251 TACACTAGCGTG-TGCCCT
1 CACACGGGCGTGTTGCCCT
67856269 ATTTTAAGGA
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
20 6 0.17
21 29 0.83
ACGTcount: A:0.12, C:0.35, G:0.27, T:0.27
Consensus pattern (21 bp):
CACACGGGCGTGTTGCCCTTC
Found at i:67857587 original size:30 final size:30
Alignment explanation
Indices: 67857551--67857626 Score: 138
Period size: 30 Copynumber: 2.6 Consensus size: 30
67857541 CAAATTTTCA
67857551 CTTATAATTAAATTAATTATGAAGTGCATT
1 CTTATAATTAAATTAATTATGAAGTGCATT
67857581 CTTATAATTAAATTAATTATGAAGTGCATT
1 CTTATAATTAAATTAATTATGAAGTGCATT
67857611 CTT-T-ATTAAATTAATT
1 CTTATAATTAAATTAATT
67857627 CTCTATAACA
Statistics
Matches: 46, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
28 12 0.26
29 1 0.02
30 33 0.72
ACGTcount: A:0.39, C:0.07, G:0.08, T:0.46
Consensus pattern (30 bp):
CTTATAATTAAATTAATTATGAAGTGCATT
Found at i:67858380 original size:22 final size:22
Alignment explanation
Indices: 67858352--67858393 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
67858342 TAGATTTATG
67858352 TTGCTACTAAACCAAACCAATA
1 TTGCTACTAAACCAAACCAATA
*
67858374 TTGCTACTAAACGAAACCAA
1 TTGCTACTAAACCAAACCAA
67858394 CATATCCACG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.45, C:0.26, G:0.07, T:0.21
Consensus pattern (22 bp):
TTGCTACTAAACCAAACCAATA
Found at i:67858632 original size:1 final size:1
Alignment explanation
Indices: 67858628--67858653 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
67858618 TTCTTTCTCC
67858628 TTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTT
67858654 ACTGCTAAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:67862644 original size:18 final size:18
Alignment explanation
Indices: 67862621--67862681 Score: 61
Period size: 18 Copynumber: 3.4 Consensus size: 18
67862611 AGGAGAAAGA
67862621 AATAAAATATATTAAAAT
1 AATAAAATATATTAAAAT
* * ***
67862639 AATAAAACAT-GTGGCAT
1 AATAAAATATATTAAAAT
67862656 CAATAAAATATATTAAAAT
1 -AATAAAATATATTAAAAT
67862675 AATAAAA
1 AATAAAA
67862682 CATGTGGCAT
Statistics
Matches: 31, Mismatches: 10, Indels: 4
0.69 0.22 0.09
Matches are distributed among these distances:
17 3 0.10
18 25 0.81
19 3 0.10
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.28
Consensus pattern (18 bp):
AATAAAATATATTAAAAT
Found at i:67862661 original size:36 final size:36
Alignment explanation
Indices: 67862621--67862692 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
67862611 AGGAGAAAGA
67862621 AATAAAATATATTAAAATAATAAAACATGTGGCATC
1 AATAAAATATATTAAAATAATAAAACATGTGGCATC
67862657 AATAAAATATATTAAAATAATAAAACATGTGGCATC
1 AATAAAATATATTAAAATAATAAAACATGTGGCATC
67862693 CTTTTTTATT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.56, C:0.08, G:0.08, T:0.28
Consensus pattern (36 bp):
AATAAAATATATTAAAATAATAAAACATGTGGCATC
Found at i:67862985 original size:20 final size:21
Alignment explanation
Indices: 67862960--67863000 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
67862950 AATTTAGAAC
67862960 TAAAAAAATAATAAT-ATAAT
1 TAAAAAAATAATAATAATAAT
**
67862980 TAAAAACCTAATAATAATAAT
1 TAAAAAAATAATAATAATAAT
67863001 ATATTGAAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.29
Consensus pattern (21 bp):
TAAAAAAATAATAATAATAAT
Found at i:67865169 original size:48 final size:49
Alignment explanation
Indices: 67865076--67865192 Score: 121
Period size: 48 Copynumber: 2.4 Consensus size: 49
67865066 ATTAATGAGA
* * * *
67865076 GCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGATATGTG-T
1 GCCAGTGTAAGACCATATCTGGAACATGGCATCGGCATCGATATGTGAT
* * * *
67865124 GCCAGTGTAAGACCATATCTGGAATATGGCCTCGGCCTCGGTATGTGAT
1 GCCAGTGTAAGACCATATCTGGAACATGGCATCGGCATCGATATGTGAT
** *
67865173 TTCA-TGTAAGACCCTATCTG
1 GCCAGTGTAAGACCATATCTG
67865193 AGATATGACG
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
48 54 0.95
49 3 0.05
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (49 bp):
GCCAGTGTAAGACCATATCTGGAACATGGCATCGGCATCGATATGTGAT
Found at i:67865287 original size:89 final size:89
Alignment explanation
Indices: 67865170--67865332 Score: 238
Period size: 89 Copynumber: 1.8 Consensus size: 89
67865160 CTCGGTATGT
* * * * *
67865170 GATTTCATGTAAGACCCTATCTGAGATATGACGTTGATATG-AGACTTCATGTAAGACCATGTCC
1 GATTTCATATAAGACCATATCTGAGATATGACATCGATATGTAGAC-CCATGTAAGACCATGTCC
67865234 GGGACATGGCATCGGTACCGCGTGA
65 GGGACATGGCATCGGTACCGCGTGA
* * *
67865259 GATTTCATATAAGACCATATCTGGGATATGGCATCGATATGTAGACCCATGTAAGACCATGTCTG
1 GATTTCATATAAGACCATATCTGAGATATGACATCGATATGTAGACCCATGTAAGACCATGTCCG
67865324 GGACATGGC
66 GGACATGGC
67865333 TTTGGCATTC
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
89 61 0.94
90 4 0.06
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (89 bp):
GATTTCATATAAGACCATATCTGAGATATGACATCGATATGTAGACCCATGTAAGACCATGTCCG
GGACATGGCATCGGTACCGCGTGA
Found at i:67865332 original size:42 final size:45
Alignment explanation
Indices: 67865217--67865332 Score: 121
Period size: 47 Copynumber: 2.6 Consensus size: 45
67865207 TATGAGACTT
* * **
67865217 CATGTAAGACCATGTCCGGGACATGGCATCGGTACCGCGTGAGATTT
1 CATGTAAGACCATGTCTGGGACATGGCATCGATA-C-CGTGAGATCC
* * * *
67865264 CATATAAGACCATATCTGGGATATGGCATCGATA-TGT-AGA-CC
1 CATGTAAGACCATGTCTGGGACATGGCATCGATACCGTGAGATCC
67865306 CATGTAAGACCATGTCTGGGACATGGC
1 CATGTAAGACCATGTCTGGGACATGGC
67865333 TTTGGCATTC
Statistics
Matches: 58, Mismatches: 11, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
42 24 0.41
43 3 0.05
44 2 0.03
47 29 0.50
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.24
Consensus pattern (45 bp):
CATGTAAGACCATGTCTGGGACATGGCATCGATACCGTGAGATCC
Found at i:67866632 original size:19 final size:19
Alignment explanation
Indices: 67866608--67866653 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
67866598 TACACGGCCT
67866608 GGGGACACAAGCGTGTCAA
1 GGGGACACAAGCGTGTCAA
*
67866627 GGGGACACAGGCGTGTCAA
1 GGGGACACAAGCGTGTCAA
*
67866646 GGGCACAC
1 GGGGACAC
67866654 GGATGTGTCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.28, C:0.24, G:0.39, T:0.09
Consensus pattern (19 bp):
GGGGACACAAGCGTGTCAA
Found at i:67867177 original size:13 final size:13
Alignment explanation
Indices: 67867159--67867183 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
67867149 GTTAATGAAG
67867159 TTTCTATGTTAGA
1 TTTCTATGTTAGA
67867172 TTTCTATGTTAG
1 TTTCTATGTTAG
67867184 TTGGAATAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.08, G:0.16, T:0.56
Consensus pattern (13 bp):
TTTCTATGTTAGA
Found at i:67868278 original size:27 final size:27
Alignment explanation
Indices: 67868247--67868399 Score: 157
Period size: 27 Copynumber: 5.7 Consensus size: 27
67868237 TAAATGCGTC
** * *
67868247 ATGAAAGAAAAGCTTTTGTGGTGAAAT
1 ATGAAAGAGTAGCCTTTGTGGAGAAAT
** *
67868274 ATGAAAGAGTAGCCTTTGTGGCCAAAG
1 ATGAAAGAGTAGCCTTTGTGGAGAAAT
* *
67868301 ATGAAAGAGTAGTCTTTGTGGAAAAAT
1 ATGAAAGAGTAGCCTTTGTGGAGAAAT
* *
67868328 ATGAAAGAGTAGCCTTTATGCAGAAAT
1 ATGAAAGAGTAGCCTTTGTGGAGAAAT
* *
67868355 ATGAAAGAGTAGCATCTGTGGCA-AAAT
1 ATGAAAGAGTAGCCTTTGTGG-AGAAAT
*
67868382 ATGAAGGA-TAGCCTTTGT
1 ATGAAAGAGTAGCCTTTGT
67868400 AGTGAACCCT
Statistics
Matches: 104, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
26 8 0.08
27 95 0.91
28 1 0.01
ACGTcount: A:0.38, C:0.09, G:0.26, T:0.27
Consensus pattern (27 bp):
ATGAAAGAGTAGCCTTTGTGGAGAAAT
Found at i:67870273 original size:42 final size:42
Alignment explanation
Indices: 67870163--67870286 Score: 169
Period size: 43 Copynumber: 2.9 Consensus size: 42
67870153 AGTACCGTAC
* *
67870163 CAATGCCATATCCCAGATATGGTCTTACATGTAATCTCGTAT
1 CAATACCATATCCCAGATATGGTCTTACATGTAATCTCATAT
* * *
67870205 CAATCCCAATAACCCAGCTATGGTCTTACATG-AAGTCTCATAT
1 CAATACC-ATATCCCAGATATGGTCTTACATGTAA-TCTCATAT
*
67870248 CGATACCATATCCCAGATATGGTCTTACATGTAATCTCA
1 CAATACCATATCCCAGATATGGTCTTACATGTAATCTCA
67870287 GTAACCCTAA
Statistics
Matches: 71, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
42 35 0.49
43 36 0.51
ACGTcount: A:0.31, C:0.26, G:0.13, T:0.31
Consensus pattern (42 bp):
CAATACCATATCCCAGATATGGTCTTACATGTAATCTCATAT
Found at i:67870412 original size:25 final size:25
Alignment explanation
Indices: 67870384--67870435 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
67870374 CTAAGGGTCA
67870384 ATCACAATTCATACAATAATAAAGT
1 ATCACAATTCATACAATAATAAAGT
67870409 ATCACAATTCATACAATAATAAAGT
1 ATCACAATTCATACAATAATAAAGT
67870434 AT
1 AT
67870436 TTAACACATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.52, C:0.15, G:0.04, T:0.29
Consensus pattern (25 bp):
ATCACAATTCATACAATAATAAAGT
Found at i:67885871 original size:40 final size:40
Alignment explanation
Indices: 67885808--67885885 Score: 129
Period size: 40 Copynumber: 1.9 Consensus size: 40
67885798 TGCAGTACCT
* *
67885808 TATGGTGTGTAGGGTTGGATGGGTCGATTTTATCCCCATA
1 TATGGTGTGCAGGGATGGATGGGTCGATTTTATCCCCATA
*
67885848 TATGGTGTGCAGGGATGGGTGGGTCGATTTTATCCCCA
1 TATGGTGTGCAGGGATGGATGGGTCGATTTTATCCCCA
67885886 CAAGGTGTAC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.17, C:0.14, G:0.35, T:0.35
Consensus pattern (40 bp):
TATGGTGTGCAGGGATGGATGGGTCGATTTTATCCCCATA
Found at i:67890083 original size:40 final size:40
Alignment explanation
Indices: 67890032--67890123 Score: 109
Period size: 40 Copynumber: 2.3 Consensus size: 40
67890022 TCGGTATCGT
67890032 ACACTTAGTGCC-TTATATAG-CTGAAGC-AATTCCAACTCGC
1 ACACTTAGTGCCATT-TATAGTC-GAAGCTAATTCCAACT-GC
* * *
67890072 ACACTTAGTGCCATTTGTAGTCGAAGCTATTTCGAACTGC
1 ACACTTAGTGCCATTTATAGTCGAAGCTAATTCCAACTGC
67890112 ACACTTAGTGCC
1 ACACTTAGTGCC
67890124 GAACATAGTC
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
40 35 0.76
41 11 0.24
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.29
Consensus pattern (40 bp):
ACACTTAGTGCCATTTATAGTCGAAGCTAATTCCAACTGC
Found at i:67892689 original size:38 final size:38
Alignment explanation
Indices: 67892638--67892846 Score: 148
Period size: 38 Copynumber: 5.0 Consensus size: 38
67892628 TTCCAAATTA
* * *
67892638 ACATGTATAACCGTGGCATATCCATTTAGCACCACGTT
1 ACATGTTTAACCGTGGTATATCCACTTAGCACCACGTT
* **
67892676 ACATGTTTAACCGTAGTATATCCACTTAGCACCAAATTAAT
1 ACATGTTTAACCGTGGTATATCCACTTAGCACC-ACGT--T
* *
67892717 GAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACGTT
1 --A-C-ATGT-T-TAACCGTGGTATATCCACTTAGCACCACGTT
*
67892761 ACATGTATCAATATGTGTAATCGTGGTATATCCACTTAGCACCACGTT
1 ACATG--------T-T-TAACCGTGGTATATCCACTTAGCACCACGTT
* *
67892809 ACACGTATAACCGTGGTATATCCACTTAGCACCACGTT
1 ACATGTTTAACCGTGGTATATCCACTTAGCACCACGTT
67892847 TTTTCATTCC
Statistics
Matches: 136, Mismatches: 18, Indels: 34
0.72 0.10 0.18
Matches are distributed among these distances:
38 59 0.43
39 2 0.01
40 3 0.02
41 2 0.01
42 1 0.01
43 1 0.01
44 2 0.01
45 3 0.02
46 3 0.02
47 24 0.18
48 36 0.26
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (38 bp):
ACATGTTTAACCGTGGTATATCCACTTAGCACCACGTT
Found at i:67892786 original size:48 final size:48
Alignment explanation
Indices: 67892683--67892816 Score: 180
Period size: 48 Copynumber: 2.8 Consensus size: 48
67892673 GTTACATGTT
* * ** *
67892683 TAACCGTAGTATATCCACTTAGCACCAAATTA-ATGAATCAATATATG
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTATCAATATATG
*
67892730 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTATCAATATGTG
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTATCAATATATG
* * *
67892778 TAATCGTGGTATATCCACTTAGCACCACGTTACACGTAT
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTAT
67892817 AACCGTGGTA
Statistics
Matches: 77, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
47 28 0.36
48 49 0.64
ACGTcount: A:0.33, C:0.23, G:0.14, T:0.30
Consensus pattern (48 bp):
TAACCGTGGCATATCCACTTAGCACCACGTTACATGTATCAATATATG
Found at i:67912488 original size:27 final size:27
Alignment explanation
Indices: 67912458--67912516 Score: 82
Period size: 27 Copynumber: 2.1 Consensus size: 27
67912448 ACACTCTAAA
* *
67912458 TTTTCAAAAGCAGTTTTCTAAAACACTT
1 TTTTCAAAA-CACTTTTCAAAAACACTT
*
67912486 TTTTCACAACACTTTTCAAAAACACTT
1 TTTTCAAAACACTTTTCAAAAACACTT
67912513 TTTT
1 TTTT
67912517 AACTTCAATG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
27 20 0.71
28 8 0.29
ACGTcount: A:0.34, C:0.20, G:0.03, T:0.42
Consensus pattern (27 bp):
TTTTCAAAACACTTTTCAAAAACACTT
Found at i:67912503 original size:12 final size:13
Alignment explanation
Indices: 67912458--67912514 Score: 53
Period size: 13 Copynumber: 4.3 Consensus size: 13
67912448 ACACTCTAAA
* *
67912458 TTTTCAAAAGCAG
1 TTTTCAAAAACAC
*
67912471 TTTTCTAAAACAC
1 TTTTCAAAAACAC
*
67912484 TTTTTTC-ACAACAC
1 --TTTTCAAAAACAC
67912498 TTTTCAAAAACAC
1 TTTTCAAAAACAC
67912511 TTTT
1 TTTT
67912515 TTAACTTCAA
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
12 5 0.14
13 20 0.56
14 6 0.17
15 5 0.14
ACGTcount: A:0.35, C:0.21, G:0.04, T:0.40
Consensus pattern (13 bp):
TTTTCAAAAACAC
Found at i:67923335 original size:68 final size:68
Alignment explanation
Indices: 67923185--67923342 Score: 169
Period size: 68 Copynumber: 2.3 Consensus size: 68
67923175 CTAGCAAATT
* * *
67923185 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACACATGCGACCTAGCTACA
1 TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGCGACCTAGCTACA
**
67923250 TTTA
65 CATA
* * *
67923254 TCTCTCCCGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTA
1 TATCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGCGACCTAGCTA
67923316 CTACATA
63 C-ACATA
67923323 GTATCTCGTAGCTCTCTTGT
1 -TATCTCGTAGCTCTCTTGT
67923343 ACACATGATG
Statistics
Matches: 75, Mismatches: 9, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
68 36 0.48
69 7 0.09
70 6 0.08
71 26 0.35
ACGTcount: A:0.21, C:0.29, G:0.16, T:0.34
Consensus pattern (68 bp):
TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGCGACCTAGCTACAC
ATA
Found at i:67928113 original size:45 final size:45
Alignment explanation
Indices: 67928049--67928164 Score: 207
Period size: 45 Copynumber: 2.6 Consensus size: 45
67928039 AAGTGTACTG
*
67928049 TACTGGCAGCTCTGCTGCAAATCACTGATGGCTTTAAGCCTATTA
1 TACTGGCAGCTCTGCTGCAAATCACTGATGGCTTTAAGCCCATTA
*
67928094 TACTGGCAGCTCTACTGCAAATCACTGATGGCTTTAAGCCCATTA
1 TACTGGCAGCTCTGCTGCAAATCACTGATGGCTTTAAGCCCATTA
67928139 TACTGGCAGCTCTGCTGCAAAT-ACTG
1 TACTGGCAGCTCTGCTGCAAATCACTG
67928165 TTTAGTGCCG
Statistics
Matches: 68, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
44 4 0.06
45 64 0.94
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.29
Consensus pattern (45 bp):
TACTGGCAGCTCTGCTGCAAATCACTGATGGCTTTAAGCCCATTA
Found at i:67931294 original size:43 final size:41
Alignment explanation
Indices: 67931227--67931391 Score: 179
Period size: 43 Copynumber: 3.9 Consensus size: 41
67931217 ATTGTACCAT
* *
67931227 TGCCATATCCTAGATATGGGCTTACATGTAATCTCGTATCGA
1 TGCCATATCC-AGATATGGTCTTACATGTAATCTCATATCGA
* *
67931269 TGCCAATAGTCCAGCTATGGTCTTACACG-AAGTCTCATATCGA
1 TGCC-ATA-TCCAGATATGGTCTTACATGTAA-TCTCATATCGA
* * *
67931312 TGCCATATCCTAGATATGATCTTACATGTAAATCTCATGTTGA
1 TGCCATATCC-AGATATGGTCTTACATGT-AATCTCATATCGA
* *
67931355 TGTCATATCTCAGATATGGTCTTACATGTATTCTCAT
1 TGCCATATC-CAGATATGGTCTTACATGTAATCTCAT
67931392 TAACCCTAAT
Statistics
Matches: 104, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
41 3 0.03
42 30 0.29
43 65 0.62
44 6 0.06
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.35
Consensus pattern (41 bp):
TGCCATATCCAGATATGGTCTTACATGTAATCTCATATCGA
Found at i:67933454 original size:47 final size:47
Alignment explanation
Indices: 67933388--67933699 Score: 223
Period size: 47 Copynumber: 6.6 Consensus size: 47
67933378 CTTGTGTGCC
*
67933388 AGTGTAAGACATGTCTGGGACATGCATCGGCCACA-ATATGATAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCCGCCACAGATATGATAGCT
* * * **
67933434 AGTGTAAGACTATGTCTGGGACATGCATCCGCGTAGAGA-ACGAGCGGC-
1 AGTGTAAGAC-ATGTCTGGGACATGCATCCGC-CACAGATATGA-TAGCT
* * * *
67933482 AGTGTAAGACATGTCTGGGACATGCATCGGCCTC-GACGATGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCCGCCACAGA-TATGATAGCT
* * * *
67933529 AATGTAAGACGTGTCTGGGACACGCATCCGCTA-AGAGT-TG-T-GCT
1 AGTGTAAGACATGTCTGGGACATGCATCCGCCACAGA-TATGATAGCT
** * *
67933573 AGTGTAAGACATGTCTGGGACATGCAT-CAACAC-GTATAGACGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCCGCCACAG-AT--ATGATAGCT
* * **
67933621 AGTATAAGACCATGTCTGGGACATGGCATCAGCTTC-GATGATGATAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCCGCCACAGAT-ATGATAGCT
*
67933670 AGTGTAAGACCATGTCCGGGACATGGCATC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATC
67933700 AGCAACATAT
Statistics
Matches: 208, Mismatches: 40, Indels: 33
0.74 0.14 0.12
Matches are distributed among these distances:
43 4 0.02
44 27 0.13
45 3 0.01
46 15 0.07
47 72 0.35
48 26 0.12
49 53 0.25
50 6 0.03
51 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCCGCCACAGATATGATAGCT
Found at i:67933548 original size:94 final size:90
Alignment explanation
Indices: 67933387--67933600 Score: 270
Period size: 94 Copynumber: 2.3 Consensus size: 90
67933377 ACTTGTGTGC
* * *
67933387 CAGTGTAAGACATGTCTGGGACATGCATCGGCCACAATATGATAGCTAGTGTAAGACTATGTCTG
1 CAGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGATGATAGCCAATGTAAGACTATGTCTG
*
67933452 GGACATGCATCCGCGTAGAGAACG-AGCGG
66 GGACACGCATCCGC-TA-AG-A-GTAG-GG
* * *
67933481 CAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGACGATGATAGCCAATGTAAGAC-GTGTCT
1 CAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-AAGATGATAGCCAATGTAAGACTATGTCT
* *
67933545 GGGACACGCATCCGCTAAGAGTTGTG
65 GGGACACGCATCCGCTAAGAGTAGGG
67933571 CTAGTGTAAGACATGTCTGGGACATGCATC
1 C-AGTGTAAGACATGTCTGGGACATGCATC
67933601 AACACGTATA
Statistics
Matches: 108, Mismatches: 9, Indels: 9
0.86 0.07 0.07
Matches are distributed among these distances:
90 3 0.03
91 30 0.28
92 2 0.02
93 2 0.02
94 53 0.49
95 18 0.17
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.22
Consensus pattern (90 bp):
CAGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGATGATAGCCAATGTAAGACTATGTCTG
GGACACGCATCCGCTAAGAGTAGGG
Done.