Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 199 of 295
Found at i:67940678 original size:47 final size:47
Alignment explanation
Indices: 67940613--67940920 Score: 233
Period size: 49 Copynumber: 6.5 Consensus size: 47
67940603 CTTGTGTGCC
67940613 AGTGTAAGACATGTCTGGGACATGCATCGGCCACA-ATATGATAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACAGATATGATAGCT
* ** * * *
67940659 AGTGTAAGATTATGTCTGGGACATGGCATCGGTGTAGAGA-ATGAGCA-CC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGG-CCACAGATATGA-TAGCT
* * *
67940708 AGTGTAAGACATGTCTGGGACATGCATCGGCCTC-GACGATGATAGTT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACAGA-TATGATAGCT
* * *
67940755 AGTGTAAGACGTGTCTGGGACACGCATCGGCTA-AGAGT-TG-T-GCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACAGA-TATGATAGCT
* * *
67940799 AGTGTAAGACATGTTTGGGACATGCATCAG-CAC-GTATAGATGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACAG-AT--ATGATAGCT
* * * * *
67940847 AGTATAAGACCATGTCTAGGACATGGCATCAGCCTC-GATGATGATAGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACAGAT-ATGATAGCT
*
67940896 AGTGTAAGACCACGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
67940921 GCATTGGTAA
Statistics
Matches: 207, Mismatches: 36, Indels: 36
0.74 0.13 0.13
Matches are distributed among these distances:
43 3 0.01
44 29 0.14
45 3 0.01
46 14 0.07
47 55 0.27
48 32 0.15
49 57 0.28
50 11 0.05
51 3 0.01
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACAGATATGATAGCT
Found at i:67940774 original size:95 final size:91
Alignment explanation
Indices: 67940610--67940920 Score: 270
Period size: 95 Copynumber: 3.3 Consensus size: 91
67940600 TTACTTGTGT
* *
67940610 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAATATGATAGCTAGTGTAAGATTATGTC
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGATGATAGCTAGTGTAAGATCATGTC
* *
67940675 TGGGACATGGCATCGG-TGTAGAGAATGA
66 TGGGACA-CGCATCGGCT-AAGAG-ATGA
* * * *
67940703 GCACCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGACGATGATAGTTAGTGTAAGA-CGT
1 G--CCAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-AAGATGATAGCTAGTGTAAGATCAT
* *
67940767 GTCTGGGACACGCATCGGCTAAGAGTTGT
63 GTCTGGGACACGCATCGGCTAAGAGATGA
* * * * * *
67940796 GCTAGTGTAAGACATGTTTGGGACATGCATCAG-CACGTATAGATGAGAGCTAGTATAAGACCAT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCAC--A-AGATGATAGCTAGTGTAAGATCAT
* * * *
67940860 GTCTAGGACATGGCATCAGCCT-CGATGATGATA
63 GTCTGGGACA-CGCATC-GGCTAAGA-GATG--A
*
67940893 GCCAGTGTAAGACCACGTCTGGGACATG
1 GCCAGTGTAAGA-CATGTCTGGGACATG
67940921 GCATTGGTAA
Statistics
Matches: 176, Mismatches: 29, Indels: 21
0.78 0.13 0.09
Matches are distributed among these distances:
90 2 0.01
91 30 0.17
92 16 0.09
93 15 0.09
94 18 0.10
95 53 0.30
96 18 0.10
97 11 0.06
98 13 0.07
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.24
Consensus pattern (91 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGATGATAGCTAGTGTAAGATCATGTC
TGGGACACGCATCGGCTAAGAGATGA
Found at i:67940924 original size:49 final size:47
Alignment explanation
Indices: 67940613--67940920 Score: 263
Period size: 47 Copynumber: 6.5 Consensus size: 47
67940603 CTTGTGTGCC
* *
67940613 AGTGTAAGACATGTCTGGGACATGCATCGGCCACAAT-ATGATAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGATAGCT
* ** * * *
67940659 AGTGTAAGATTATGTCTGGGACATGGCATCGGTGTAGA-GAATGAGCA-CC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGATG-ATGA-TAGCT
* *
67940708 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGACGATGATAGTT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGATAGCT
* * * *
67940755 AGTGTAAGACGTGTCTGGGACACGCATCGG-CTAAGA-GTTG-T-GCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGATGATGATAGCT
* * * *
67940799 AGTGTAAGACATGTTTGGGACATGCATCAG-CACGTATAGATGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCG-AT-GATGATAGCT
* * * *
67940847 AGTATAAGACCATGTCTAGGACATGGCATCAGCCTCGATGATGATAGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGATGATGATAGCT
*
67940896 AGTGTAAGACCACGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
67940921 GCATTGGTAA
Statistics
Matches: 209, Mismatches: 37, Indels: 30
0.76 0.13 0.11
Matches are distributed among these distances:
43 1 0.00
44 30 0.14
45 1 0.00
46 18 0.09
47 57 0.27
48 34 0.16
49 55 0.26
50 10 0.05
51 3 0.01
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGATAGCT
Found at i:67952741 original size:46 final size:45
Alignment explanation
Indices: 67952644--67952777 Score: 144
Period size: 46 Copynumber: 2.9 Consensus size: 45
67952634 GGACTCACCA
* * * *
67952644 TAGCTCGTAC-GAGCTTACTATTTCAGCTTATTGGAGCTTATCGATT
1 TAGCTCG-ACAGAGCTTACT-TTTCAGCTCAATAGAGCTTACCGATT
*
67952690 TAGCTCGACAGAGCTTACTGTTCAGCTCAATAGAGCTTACCGATT
1 TAGCTCGACAGAGCTTACTTTTCAGCTCAATAGAGCTTACCGATT
* * *
67952735 TCAGCTCAATAGAGTTTACCGTTTTCAGCTCAATAGAGCTTAC
1 T-AGCTCGACAGAGCTTA-C-TTTTCAGCTCAATAGAGCTTAC
67952778 TGTTCATCAG
Statistics
Matches: 75, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
45 24 0.32
46 29 0.39
47 1 0.01
48 21 0.28
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (45 bp):
TAGCTCGACAGAGCTTACTTTTCAGCTCAATAGAGCTTACCGATT
Found at i:67952742 original size:24 final size:24
Alignment explanation
Indices: 67952654--67952777 Score: 130
Period size: 24 Copynumber: 5.3 Consensus size: 24
67952644 TAGCTCGTAC
* * * *
67952654 GAGCTTA-CTATTTCAGCTTATTG
1 GAGCTTACCGATTTCAGCTCAATA
* * *
67952677 GAGCTTATCGATTT-AGCTCGACA
1 GAGCTTACCGATTTCAGCTCAATA
*
67952700 GAGCTTACTG--TTCAGCTCAATA
1 GAGCTTACCGATTTCAGCTCAATA
67952722 GAGCTTACCGATTTCAGCTCAATA
1 GAGCTTACCGATTTCAGCTCAATA
* *
67952746 GAGTTTACCGTTTTCAGCTCAATA
1 GAGCTTACCGATTTCAGCTCAATA
67952770 GAGCTTAC
1 GAGCTTAC
67952778 TGTTCATCAG
Statistics
Matches: 83, Mismatches: 14, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
21 2 0.02
22 16 0.19
23 19 0.23
24 46 0.55
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.34
Consensus pattern (24 bp):
GAGCTTACCGATTTCAGCTCAATA
Found at i:67952770 original size:48 final size:45
Alignment explanation
Indices: 67952654--67952777 Score: 131
Period size: 45 Copynumber: 2.7 Consensus size: 45
67952644 TAGCTCGTAC
* * * * * *
67952654 GAGCTTACTATTTCAGCTTATTGGAGCTTATCGATTTAGCTCGACA
1 GAGCTTACT-GTTCAGCTCAATAGAGCTTACCGATTTAGCTCAACA
*
67952700 GAGCTTACTGTTCAGCTCAATAGAGCTTACCGATTTCAGCTCAATA
1 GAGCTTACTGTTCAGCTCAATAGAGCTTACCGATTT-AGCTCAACA
* *
67952746 GAGTTTACCGTTTTCAGCTCAATAGAGCTTAC
1 GAGCTTA-C-TGTTCAGCTCAATAGAGCTTAC
67952778 TGTTCATCAG
Statistics
Matches: 66, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
45 22 0.33
46 22 0.33
47 1 0.02
48 21 0.32
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.34
Consensus pattern (45 bp):
GAGCTTACTGTTCAGCTCAATAGAGCTTACCGATTTAGCTCAACA
Found at i:67959431 original size:36 final size:36
Alignment explanation
Indices: 67959384--67959457 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
67959374 TTTAATGACA
67959384 TAGTGGAAGTGGTTGTCTTGGTATTTTTGAAATTAT
1 TAGTGGAAGTGGTTGTCTTGGTATTTTTGAAATTAT
67959420 TAGTGGAAGTGGTTGTCTTGGTATTTTTGAAATTAT
1 TAGTGGAAGTGGTTGTCTTGGTATTTTTGAAATTAT
67959456 TA
1 TA
67959458 AATGTTTTAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.23, C:0.03, G:0.27, T:0.47
Consensus pattern (36 bp):
TAGTGGAAGTGGTTGTCTTGGTATTTTTGAAATTAT
Found at i:67959981 original size:22 final size:22
Alignment explanation
Indices: 67959940--67960022 Score: 69
Period size: 22 Copynumber: 3.6 Consensus size: 22
67959930 CAGGTTATTG
* * *
67959940 GAGCTTATTGATTTAGCTCAAAA
1 GAGCTTCTTG-TTCAGCTCAATA
67959963 GAGCTTCTTGTTCAGCTCAATA
1 GAGCTTCTTGTTCAGCTCAATA
*
67959985 GATCTTATCATT-TTCAGCTCAATA
1 GAGC-T-TC-TTGTTCAGCTCAATA
* *
67960009 GAGCCTCCTGTTCA
1 GAGCTTCTTGTTCA
67960023 TTAGCTCAAG
Statistics
Matches: 49, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
21 1 0.02
22 19 0.39
23 10 0.20
24 17 0.35
25 2 0.04
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.36
Consensus pattern (22 bp):
GAGCTTCTTGTTCAGCTCAATA
Found at i:67971483 original size:18 final size:19
Alignment explanation
Indices: 67971434--67971484 Score: 61
Period size: 18 Copynumber: 2.8 Consensus size: 19
67971424 GTAGCAGTGG
67971434 CAGTAATCAATGCAGTAAC
1 CAGTAATCAATGCAGTAAC
* *
67971453 CA-TGACCAATGCAGTAA-
1 CAGTAATCAATGCAGTAAC
*
67971470 CAGTAATCAGTGCAG
1 CAGTAATCAATGCAG
67971485 AATGCAAATA
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
17 2 0.08
18 22 0.85
19 2 0.08
ACGTcount: A:0.39, C:0.22, G:0.20, T:0.20
Consensus pattern (19 bp):
CAGTAATCAATGCAGTAAC
Found at i:67971866 original size:27 final size:27
Alignment explanation
Indices: 67971835--67971930 Score: 102
Period size: 27 Copynumber: 3.6 Consensus size: 27
67971825 TAGGGCAAAT
* *
67971835 CAGTCATTTTACCTTATAGGGGTATTA
1 CAGTCATTTTACCCTACAGGGGTATTA
* * *
67971862 CAGTCATTTTACCCTACAAGGATATTC
1 CAGTCATTTTACCCTACAGGGGTATTA
* * * *
67971889 CGGTCATTCTACCCTACGGGGGTATTT
1 CAGTCATTTTACCCTACAGGGGTATTA
*
67971916 CAGTCATCTTACCCT
1 CAGTCATTTTACCCT
67971931 GTGAGGGTAT
Statistics
Matches: 55, Mismatches: 14, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 55 1.00
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (27 bp):
CAGTCATTTTACCCTACAGGGGTATTA
Found at i:67971976 original size:27 final size:27
Alignment explanation
Indices: 67971946--67972234 Score: 348
Period size: 27 Copynumber: 10.7 Consensus size: 27
67971936 GGTATTTCAA
*
67971946 TCATTTTATCACATAAGGGAAAAATCG
1 TCATTTTATCACATAAGGGTAAAATCG
* * *
67971973 TCATTTTATCACATGAGGGCAAAATTG
1 TCATTTTATCACATAAGGGTAAAATCG
* *
67972000 TCATTTTATCACATAAGGGCAAAATCA
1 TCATTTTATCACATAAGGGTAAAATCG
* *
67972027 TCATTTTATCACAAAAAGGTAAAA-CTG
1 TCATTTTATCACATAAGGGTAAAATC-G
* * *
67972054 TCATTTTATCATAGAAGGGTAATATCG
1 TCATTTTATCACATAAGGGTAAAATCG
* * * *
67972081 TCATTTTATCATAGAAGGGCAATATCG
1 TCATTTTATCACATAAGGGTAAAATCG
67972108 TCATTTTATC-CATAAGGGTAAAATCG
1 TCATTTTATCACATAAGGGTAAAATCG
* *
67972134 TCATTTTAGCATATAAGGGTAAAATCG
1 TCATTTTATCACATAAGGGTAAAATCG
* * * *
67972161 TCAATTTATCACATAAGGGCAATATCT
1 TCATTTTATCACATAAGGGTAAAATCG
*
67972188 TCATTTTATCACATAAGGGTAAAATCA
1 TCATTTTATCACATAAGGGTAAAATCG
*
67972215 TCATTATATCACATAAGGGT
1 TCATTTTATCACATAAGGGT
67972235 TTAGGTATGC
Statistics
Matches: 227, Mismatches: 32, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
26 22 0.10
27 204 0.90
28 1 0.00
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33
Consensus pattern (27 bp):
TCATTTTATCACATAAGGGTAAAATCG
Found at i:67972030 original size:81 final size:81
Alignment explanation
Indices: 67971945--67972234 Score: 386
Period size: 81 Copynumber: 3.6 Consensus size: 81
67971935 GGGTATTTCA
* * * *
67971945 ATCATTTTATCACATAAGGGAAAAATCGTCATTTTATCACATGAGGGCAAAATTGTCATTTTATC
1 ATCATTTTATCACATAAGGGTAAAATCGTCATTTTATCACATAAGGGTAAAATCGTCATTTTATC
*
67972010 ACATAAGGGCAAAATC
66 ACATAAGGGCAATATC
* * * * *
67972026 ATCATTTTATCACAAAAAGGTAAAA-CTGTCATTTTATCATAGAAGGGTAATATCGTCATTTTAT
1 ATCATTTTATCACATAAGGGTAAAATC-GTCATTTTATCACATAAGGGTAAAATCGTCATTTTAT
* *
67972090 CATAGAAGGGCAATATC
65 CACATAAGGGCAATATC
* * * *
67972107 GTCATTTTATC-CATAAGGGTAAAATCGTCATTTTAGCATATAAGGGTAAAATCGTCAATTTATC
1 ATCATTTTATCACATAAGGGTAAAATCGTCATTTTATCACATAAGGGTAAAATCGTCATTTTATC
67972171 ACATAAGGGCAATATC
66 ACATAAGGGCAATATC
* * *
67972187 TTCATTTTATCACATAAGGGTAAAATCATCATTATATCACATAAGGGT
1 ATCATTTTATCACATAAGGGTAAAATCGTCATTTTATCACATAAGGGT
67972235 TTAGGTATGC
Statistics
Matches: 180, Mismatches: 26, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
80 70 0.39
81 110 0.61
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.33
Consensus pattern (81 bp):
ATCATTTTATCACATAAGGGTAAAATCGTCATTTTATCACATAAGGGTAAAATCGTCATTTTATC
ACATAAGGGCAATATC
Found at i:67976349 original size:22 final size:21
Alignment explanation
Indices: 67976320--67976365 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
67976310 CATAAACTCC
*
67976320 TAAAAATAAATAACAAAAAAT
1 TAAAAATAAAAAACAAAAAAT
* *
67976341 TAAAGAATAAAAAATAAAGAAT
1 TAAA-AATAAAAAACAAAAAAT
67976363 TAA
1 TAA
67976366 TTAGTAAAGT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 4 0.19
22 17 0.81
ACGTcount: A:0.74, C:0.02, G:0.04, T:0.20
Consensus pattern (21 bp):
TAAAAATAAAAAACAAAAAAT
Found at i:67976362 original size:14 final size:14
Alignment explanation
Indices: 67976321--67976362 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
67976311 ATAAACTCCT
* *
67976321 AAAAATAAATAACA
1 AAAAATAAAGAATA
67976335 AAAAATTAAAGAATA
1 AAAAA-TAAAGAATA
67976350 AAAAATAAAGAAT
1 AAAAATAAAGAAT
67976363 TAATTAGTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 13 0.52
15 12 0.48
ACGTcount: A:0.76, C:0.02, G:0.05, T:0.17
Consensus pattern (14 bp):
AAAAATAAAGAATA
Found at i:67987832 original size:53 final size:53
Alignment explanation
Indices: 67987703--67987833 Score: 149
Period size: 53 Copynumber: 2.5 Consensus size: 53
67987693 TTAGTTTACT
* * * *
67987703 AAAATTA-TCGAAATACCCTTAGTTTGTAAAATTACTGAAATACCCTCGATTTGG
1 AAAATTACTC-AAATACCC-TCGATTGTAAAATTACTGAAATACCATCAATTTGG
* * * *
67987757 AAAATTACTGAAATACCGTCGATTGTAAAATTACTGAAATGCCATCAATTTGT
1 AAAATTACTCAAATACCCTCGATTGTAAAATTACTGAAATACCATCAATTTGG
67987810 AAAATTAC-CAAAGTACCCTCGATT
1 AAAATTACTCAAA-TACCCTCGATT
67987834 TACAGAATTA
Statistics
Matches: 65, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
52 3 0.05
53 47 0.72
54 14 0.22
55 1 0.02
ACGTcount: A:0.39, C:0.18, G:0.12, T:0.31
Consensus pattern (53 bp):
AAAATTACTCAAATACCCTCGATTGTAAAATTACTGAAATACCATCAATTTGG
Found at i:67987834 original size:27 final size:27
Alignment explanation
Indices: 67987702--67988151 Score: 248
Period size: 27 Copynumber: 16.7 Consensus size: 27
67987692 TTTAGTTTAC
* * *
67987702 TAAAATTATCGAAATACCCT-TAGTTTG
1 TAAAATTACCAAAATACCCTCGA-TTTG
**
67987729 TAAAATTACTGAAATACCCTCGATTTG
1 TAAAATTACCAAAATACCCTCGATTTG
* ** *
67987756 GAAAATTACTGAAATACCGTCGA-TTG
1 TAAAATTACCAAAATACCCTCGATTTG
** * * *
67987782 TAAAATTACTGAAATGCCATCAATTTG
1 TAAAATTACCAAAATACCCTCGATTTG
* *
67987809 TAAAATTACCAAAGTACCCTCGATTTA
1 TAAAATTACCAAAATACCCTCGATTTG
* * * **** *
67987836 CAGAATTATCGTTTTACCCTCGATTTA
1 TAAAATTACCAAAATACCCTCGATTTG
* *** * *
67987863 TAGAATTACCATTTTACCATCGATTTA
1 TAAAATTACCAAAATACCCTCGATTTG
* **** * *
67987890 TAGAATTACCGTTTTACCCTCAATTTA
1 TAAAATTACCAAAATACCCTCGATTTG
* **** *
67987917 TAGAATTACCGTTTTACCCTCGATTTA
1 TAAAATTACCAAAATACCCTCGATTTG
* * * * *
67987944 CAAAATTACTAAAATACCCTTGGTTTA
1 TAAAATTACCAAAATACCCTCGATTTG
* **
67987971 CAAAATTACCAAAATACCCTCGATCAG
1 TAAAATTACCAAAATACCCTCGATTTG
*
67987998 TAAAATTACCAAAATACCC-CTAGTTTG
1 TAAAATTACCAAAATACCCTCGA-TTTG
* *
67988025 TAAAATTACTAAAATACCC-CTGGTTTG
1 TAAAATTACCAAAATACCCTC-GATTTG
*
67988052 TAAAATTACCAAAATACCC-CTATCTTG
1 TAAAATTACCAAAATACCCTCGAT-TTG
67988079 TAAAATTACCAAAATACCC-CTGATTTG
1 TAAAATTACCAAAATACCCTC-GATTTG
* * * * *
67988106 TGAAATTATCGAAATACTCTCGATTTA
1 TAAAATTACCAAAATACCCTCGATTTG
**
67988133 TAAAA-TATTAAAATACCCT
1 TAAAATTACCAAAATACCCT
67988152 TGTAGGGTAG
Statistics
Matches: 350, Mismatches: 66, Indels: 15
0.81 0.15 0.03
Matches are distributed among these distances:
26 36 0.10
27 310 0.89
28 4 0.01
ACGTcount: A:0.38, C:0.20, G:0.09, T:0.33
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCTCGATTTG
Found at i:67988184 original size:27 final size:27
Alignment explanation
Indices: 67988143--67988437 Score: 360
Period size: 27 Copynumber: 11.0 Consensus size: 27
67988133 TAAAATATTA
* *
67988143 AAATACCCTTGTAGGGTAGAATGACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
67988170 AAATACCCCTATAGGGTAGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTACCG
**
67988197 AAATACCCCTGTAGGGTAGAATTACTA
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
67988224 AAATAACCCTGTGGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
67988251 AAATA-CCCTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * *
67988277 AAATAACCCTGTGGGGTAAAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
67988304 AAATACCCCTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
67988331 AAATACCCCAGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
*** * *
67988358 AAATACAATTGTAGGGTAAAAATACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
67988385 AAATACCCCTGTAGGGTAGAATTA-CT
1 AAATACCCCTGTAGGGTAGAATTACCG
* * *
67988411 AAGATACCCTTGTGGGGTAAAATTACC
1 AA-ATACCCCTGTAGGGTAGAATTACC
67988438 ATTTTGCCCC
Statistics
Matches: 227, Mismatches: 38, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
26 27 0.12
27 199 0.88
28 1 0.00
ACGTcount: A:0.36, C:0.18, G:0.22, T:0.24
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACCG
Found at i:67988676 original size:25 final size:25
Alignment explanation
Indices: 67988642--67988736 Score: 163
Period size: 25 Copynumber: 3.8 Consensus size: 25
67988632 AGGAAGTGCT
*
67988642 AAAAGGGCTTTGCCCCAATTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
67988667 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
* *
67988692 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCG
67988717 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
67988737 CTTAAAAGAG
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 67 1.00
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:68004030 original size:36 final size:36
Alignment explanation
Indices: 68003990--68004062 Score: 128
Period size: 36 Copynumber: 2.0 Consensus size: 36
68003980 ACAATATGGC
* *
68003990 TTATGTTGTAGGTAAATAACAATAAAGTAGGCCATA
1 TTATGATGTAGGAAAATAACAATAAAGTAGGCCATA
68004026 TTATGATGTAGGAAAATAACAATAAAGTAGGCCATA
1 TTATGATGTAGGAAAATAACAATAAAGTAGGCCATA
68004062 T
1 T
68004063 AGCTCAAACT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.44, C:0.08, G:0.19, T:0.29
Consensus pattern (36 bp):
TTATGATGTAGGAAAATAACAATAAAGTAGGCCATA
Found at i:68015727 original size:18 final size:18
Alignment explanation
Indices: 68015704--68015739 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
68015694 CTTCAAAGTT
68015704 TTTTAATGATTTCTTGTG
1 TTTTAATGATTTCTTGTG
*
68015722 TTTTAATGATTTTTTGTG
1 TTTTAATGATTTCTTGTG
68015740 GATATTGCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.17, C:0.03, G:0.17, T:0.64
Consensus pattern (18 bp):
TTTTAATGATTTCTTGTG
Found at i:68017803 original size:16 final size:16
Alignment explanation
Indices: 68017782--68017812 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
68017772 ATTTCTTAGT
68017782 GGATCAACTATTCAGC
1 GGATCAACTATTCAGC
68017798 GGATCAACTATTCAG
1 GGATCAACTATTCAG
68017813 GAGAGGAAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (16 bp):
GGATCAACTATTCAGC
Found at i:68018774 original size:35 final size:37
Alignment explanation
Indices: 68018703--68018791 Score: 146
Period size: 35 Copynumber: 2.4 Consensus size: 37
68018693 ATAATCTTCA
68018703 ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
1 ATGATA-GCAATCTTAGATATGATATGCAATCTTAGAT
68018741 ATGATA-CAATCTTAGATATGAT-TGCAATCTTAGAT
1 ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
68018776 ATGATATGCAATCTTA
1 ATGATA-GCAATCTTA
68018792 AAAGATATGA
Statistics
Matches: 49, Mismatches: 0, Indels: 5
0.91 0.00 0.09
Matches are distributed among these distances:
35 19 0.39
36 16 0.33
37 8 0.16
38 6 0.12
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (37 bp):
ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
Found at i:68018800 original size:17 final size:19
Alignment explanation
Indices: 68018703--68018791 Score: 157
Period size: 19 Copynumber: 4.8 Consensus size: 19
68018693 ATAATCTTCA
68018703 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
68018722 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
68018741 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
68018758 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
68018776 ATGATATGCAATCTTA
1 ATGATATGCAATCTTA
68018792 AAAGATATGA
Statistics
Matches: 67, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 35 0.52
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:68018819 original size:22 final size:22
Alignment explanation
Indices: 68018703--68018802 Score: 95
Period size: 19 Copynumber: 5.2 Consensus size: 22
68018693 ATAATCTTCA
68018703 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAAAAGAT
68018722 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAAAAGAT
68018741 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAAAAGAT
68018758 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAAAAGAT
68018776 ATGATATGCAATCTTAAAAGAT
1 ATGATATGCAATCTTAAAAGAT
68018798 ATGAT
1 ATGAT
68018803 TTTGTAATCT
Statistics
Matches: 75, Mismatches: 0, Indels: 9
0.89 0.00 0.11
Matches are distributed among these distances:
17 16 0.21
18 16 0.21
19 34 0.45
22 9 0.12
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.36
Consensus pattern (22 bp):
ATGATATGCAATCTTAAAAGAT
Found at i:68019108 original size:18 final size:19
Alignment explanation
Indices: 68019085--68019120 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
68019075 TTTCCCTAAT
*
68019085 TTTTTTTATAT-ATTTTAA
1 TTTTTTTAAATCATTTTAA
68019103 TTTTTTTAAATCATTTTA
1 TTTTTTTAAATCATTTTA
68019121 GTATCATATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (19 bp):
TTTTTTTAAATCATTTTAA
Found at i:68026820 original size:45 final size:45
Alignment explanation
Indices: 68026714--68026850 Score: 204
Period size: 45 Copynumber: 3.1 Consensus size: 45
68026704 GATCCAAGAT
* * * *
68026714 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATTAAAGA-AGCA
1 GATTTGGCGTCTCTGTATTAGACAGGGAGCAGATCAAAGATAGCA
* *
68026758 GATTTGGCGTCTCTGTATTAGACAGGGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTATTAGACAGGGAGCAGATCAAAGATAGCA
*
68026803 GATTTGGCGTCTCTGTATTAGACTGGGAGCAGATCAAAGATAGCA
1 GATTTGGCGTCTCTGTATTAGACAGGGAGCAGATCAAAGATAGCA
68026848 GAT
1 GAT
68026851 ATTGCCTTCC
Statistics
Matches: 83, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
44 35 0.42
45 48 0.58
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.26
Consensus pattern (45 bp):
GATTTGGCGTCTCTGTATTAGACAGGGAGCAGATCAAAGATAGCA
Found at i:68027237 original size:14 final size:15
Alignment explanation
Indices: 68027220--68027275 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 15
68027210 TCTCAGATAT
68027220 GATATG-CAATCTTA
1 GATATGACAATCTTA
68027234 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
68027251 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
68027269 GATATGA
1 GATATGA
68027276 TATGCAATCT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.17
15 1 0.03
17 14 0.39
18 15 0.42
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:68027270 original size:35 final size:37
Alignment explanation
Indices: 68027199--68027296 Score: 141
Period size: 35 Copynumber: 2.7 Consensus size: 37
68027189 ATAATCTTCA
*
68027199 ATGATATGCAATCTCAGATATGATATGCAATCTTAGAT
1 ATGATA-GCAATCTTAGATATGATATGCAATCTTAGAT
68027237 ATGATA-CAATCTTAGATATGAT-TGCAATCTTAGAT
1 ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
68027272 ATGATATGCAATCTTAGA-A-GATATG
1 ATGATA-GCAATCTTAGATATGATATG
68027297 ATTTTGTAAT
Statistics
Matches: 56, Mismatches: 1, Indels: 8
0.86 0.02 0.12
Matches are distributed among these distances:
35 22 0.39
36 18 0.32
37 10 0.18
38 6 0.11
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.35
Consensus pattern (37 bp):
ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
Found at i:68027296 original size:17 final size:19
Alignment explanation
Indices: 68027199--68027289 Score: 152
Period size: 19 Copynumber: 4.9 Consensus size: 19
68027189 ATAATCTTCA
*
68027199 ATGATATGCAATCTCAGAT
1 ATGATATGCAATCTTAGAT
68027218 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
68027237 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
68027254 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
68027272 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
68027290 AGATATGATT
Statistics
Matches: 68, Mismatches: 1, Indels: 6
0.91 0.01 0.08
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 36 0.53
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.35
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:68027315 original size:22 final size:22
Alignment explanation
Indices: 68027199--68027312 Score: 87
Period size: 19 Copynumber: 5.8 Consensus size: 22
68027189 ATAATCTTCA
*
68027199 ATGATATGCAATC-T--CAGAT
1 ATGATATGCAATCTTAGAAGAT
68027218 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
68027237 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
68027254 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
68027272 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
68027294 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
68027313 GATTTAATTT
Statistics
Matches: 85, Mismatches: 2, Indels: 12
0.86 0.02 0.12
Matches are distributed among these distances:
17 16 0.19
18 16 0.19
19 32 0.38
20 1 0.01
22 8 0.09
23 12 0.14
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.37
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:68041941 original size:16 final size:16
Alignment explanation
Indices: 68041902--68042016 Score: 90
Period size: 16 Copynumber: 7.2 Consensus size: 16
68041892 GTCTCACTAC
* *
68041902 CTATCGTTTTCACTAT
1 CTATAGTTTTCACAAT
* *
68041918 CTAGAGTTTTCACAGT
1 CTATAGTTTTCACAAT
* * *
68041934 CTATAGTTGTCTCAAA
1 CTATAGTTTTCACAAT
* *
68041950 CTATAGCTTTCCACAGT
1 CTATAG-TTTTCACAAT
* *
68041967 CTATAGTTGTCTCAAT
1 CTATAGTTTTCACAAT
*
68041983 CTATAGTTTTTCACATT
1 CTATAG-TTTTCACAAT
68042000 CTATAG-TTTCA-AAT
1 CTATAGTTTTCACAAT
68042014 CTA
1 CTA
68042017 ACTAACACTT
Statistics
Matches: 75, Mismatches: 22, Indels: 6
0.73 0.21 0.06
Matches are distributed among these distances:
14 5 0.07
15 5 0.07
16 41 0.55
17 24 0.32
ACGTcount: A:0.26, C:0.21, G:0.10, T:0.43
Consensus pattern (16 bp):
CTATAGTTTTCACAAT
Found at i:68041965 original size:33 final size:33
Alignment explanation
Indices: 68041928--68042007 Score: 124
Period size: 33 Copynumber: 2.4 Consensus size: 33
68041918 CTAGAGTTTT
68041928 CACAGTCTATAGTTGTCTCAAACTATAGCTTTC
1 CACAGTCTATAGTTGTCTCAAACTATAGCTTTC
* * *
68041961 CACAGTCTATAGTTGTCTCAATCTATAGTTTTT
1 CACAGTCTATAGTTGTCTCAAACTATAGCTTTC
*
68041994 CACATTCTATAGTT
1 CACAGTCTATAGTT
68042008 TCAAATCTAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 43 1.00
ACGTcount: A:0.26, C:0.21, G:0.11, T:0.41
Consensus pattern (33 bp):
CACAGTCTATAGTTGTCTCAAACTATAGCTTTC
Found at i:68046164 original size:21 final size:20
Alignment explanation
Indices: 68046140--68046185 Score: 58
Period size: 21 Copynumber: 2.3 Consensus size: 20
68046130 CTTGTATAAC
*
68046140 TATCATCAAACATTCATAATA
1 TATCATCAAACA-TCAAAATA
*
68046161 TATCATTAAACATCAAAATA
1 TATCATCAAACATCAAAATA
68046181 -ATCAT
1 TATCAT
68046186 GTATTCAGCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 5 0.22
20 7 0.30
21 11 0.48
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (20 bp):
TATCATCAAACATCAAAATA
Found at i:68047934 original size:26 final size:26
Alignment explanation
Indices: 68047905--68047955 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
68047895 TCTCAAACAA
68047905 GCACTTATGAAAACGAGGAAATGATT
1 GCACTTATGAAAACGAGGAAATGATT
68047931 GCACTTATGAAAACGAGGAAATGAT
1 GCACTTATGAAAACGAGGAAATGAT
68047956 GTGAGCATAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.43, C:0.12, G:0.24, T:0.22
Consensus pattern (26 bp):
GCACTTATGAAAACGAGGAAATGATT
Found at i:68049521 original size:11 final size:12
Alignment explanation
Indices: 68049505--68049538 Score: 52
Period size: 11 Copynumber: 2.8 Consensus size: 12
68049495 TTCTAATTAG
68049505 TTGAAAAAAA-T
1 TTGAAAAAAACT
68049516 TTGAAAAAAACT
1 TTGAAAAAAACT
68049528 TGTGAAAAAAA
1 T-TGAAAAAAA
68049539 AAGAATATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 10 0.48
12 2 0.10
13 9 0.43
ACGTcount: A:0.62, C:0.03, G:0.12, T:0.24
Consensus pattern (12 bp):
TTGAAAAAAACT
Found at i:68052490 original size:43 final size:42
Alignment explanation
Indices: 68052377--68052491 Score: 103
Period size: 43 Copynumber: 2.6 Consensus size: 42
68052367 TGTGATTTCG
*
68052377 TGTAAGACCACGTCTGGAACGTTGGAAATGATTTGAGATTTACA
1 TGTAAGACCACGTCTGG-ACGTTGG-CATGATTTGAGATTTACA
* *
68052421 TGTAAGACC-CTGTCTGGGACAG-TGGCATCGATATT-CGA-TTATA
1 TGTAAGACCAC-GTCT-GGAC-GTTGGCAT-GAT-TTGAGATTTACA
68052464 TGTAAGACCACGTCTAGGACGTTGGCAT
1 TGTAAGACCACGTCT-GGACGTTGGCAT
68052492 TGTATGAGCT
Statistics
Matches: 60, Mismatches: 4, Indels: 15
0.76 0.05 0.19
Matches are distributed among these distances:
42 1 0.02
43 30 0.50
44 24 0.40
45 5 0.08
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGACGTTGGCATGATTTGAGATTTACA
Found at i:68056222 original size:46 final size:46
Alignment explanation
Indices: 68056155--68056323 Score: 186
Period size: 46 Copynumber: 3.7 Consensus size: 46
68056145 TGAGCATTCA
*
68056155 AACTCGTTGAGTTGATTCCGAGTTTACTTATGGATGCGAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTTACTTATGGATGCGAATGTCCG
* *
68056201 AACTCGTTGAGTTGAGTCCGAG-TT-C--GTGAGATG-TAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTTACTTATG-GATGCGAA-T--G--TCCG
* * *
68056248 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTTACTTATGGATGCGAATGTCCG
*
68056294 AGCTCGTTGAGTTGAGTCCGAGTTTACTTA
1 AACTCGTTGAGTTGAGTCCGAGTTTACTTA
68056324 GGGGCGGGTT
Statistics
Matches: 102, Mismatches: 10, Indels: 22
0.76 0.07 0.16
Matches are distributed among these distances:
42 4 0.04
43 5 0.05
44 1 0.01
45 3 0.03
46 52 0.51
47 26 0.25
48 2 0.02
49 1 0.01
50 4 0.04
51 4 0.04
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.31
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTTACTTATGGATGCGAATGTCCG
Found at i:68063023 original size:43 final size:44
Alignment explanation
Indices: 68062910--68063024 Score: 121
Period size: 44 Copynumber: 2.6 Consensus size: 44
68062900 TGTAATTTCG
* *
68062910 TGTAAGACCACGTCTGGGATGTTGGCAACGATTTGAGATCTACA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATTTGAGATCTACA
* * *
68062954 TGTAAGACTC-TGTCTGGGACAG-TGGCATCGATATT-CGAT-TATA
1 TGTAAGAC-CACGTCTGGGAC-GTTGGCATCGAT-TTGAGATCTACA
*
68062997 TGTAAGACCACGTCTAGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
68063025 TGTATGAGCT
Statistics
Matches: 59, Mismatches: 7, Indels: 11
0.77 0.09 0.14
Matches are distributed among these distances:
42 2 0.03
43 25 0.42
44 28 0.47
45 4 0.07
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (44 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATTTGAGATCTACA
Found at i:68065311 original size:11 final size:11
Alignment explanation
Indices: 68065295--68065342 Score: 62
Period size: 11 Copynumber: 4.5 Consensus size: 11
68065285 AACAATCTGT
*
68065295 AGAAAAATAAA
1 AGAAAAAGAAA
68065306 AGAAAAAGAAA
1 AGAAAAAGAAA
**
68065317 AGAATGA-AAA
1 AGAAAAAGAAA
68065327 AGAAAAAGAAA
1 AGAAAAAGAAA
68065338 AGAAA
1 AGAAA
68065343 TTAGAAAAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
10 8 0.26
11 23 0.74
ACGTcount: A:0.79, C:0.00, G:0.17, T:0.04
Consensus pattern (11 bp):
AGAAAAAGAAA
Found at i:68077135 original size:30 final size:30
Alignment explanation
Indices: 68077060--68077136 Score: 82
Period size: 30 Copynumber: 2.6 Consensus size: 30
68077050 TCAGCTCACA
*
68077060 AGCTAAACCTTAGCTCAACTTAAGCTTAGG
1 AGCTAAACCTTAGCTCAACTTAAGCTCAGG
* * * * * *
68077090 AGTTTAATCTCAGCTCAACTTTAGCTCATG
1 AGCTAAACCTTAGCTCAACTTAAGCTCAGG
*
68077120 AGCTAAAGCTTAGCTCA
1 AGCTAAACCTTAGCTCA
68077137 TTTTAGTTTA
Statistics
Matches: 36, Mismatches: 11, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (30 bp):
AGCTAAACCTTAGCTCAACTTAAGCTCAGG
Found at i:68084121 original size:52 final size:52
Alignment explanation
Indices: 68084059--68084160 Score: 177
Period size: 52 Copynumber: 2.0 Consensus size: 52
68084049 TAATATGTAG
* *
68084059 AGTAATTGATATTATCTTATTGGCATTACATGATAGATGACAAGTAAAACTA
1 AGTAATTGATATTATCTTATTAGCATTACATGATAGATGAAAAGTAAAACTA
*
68084111 AGTAATTGATATTCTCTTATTAGCATTACATGATAGATGAAAAGTAAAAC
1 AGTAATTGATATTATCTTATTAGCATTACATGATAGATGAAAAGTAAAAC
68084161 ATGGCTACGG
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 47 1.00
ACGTcount: A:0.41, C:0.10, G:0.15, T:0.34
Consensus pattern (52 bp):
AGTAATTGATATTATCTTATTAGCATTACATGATAGATGAAAAGTAAAACTA
Found at i:68084860 original size:16 final size:17
Alignment explanation
Indices: 68084825--68084861 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
68084815 TAGAATTAGG
68084825 TTGAGAAAATTATTTAA
1 TTGAGAAAATTATTTAA
*
68084842 TTGAGAAATTTATTT-A
1 TTGAGAAAATTATTTAA
68084858 TTGA
1 TTGA
68084862 AATTAATTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 5 0.26
17 14 0.74
ACGTcount: A:0.41, C:0.00, G:0.14, T:0.46
Consensus pattern (17 bp):
TTGAGAAAATTATTTAA
Found at i:68088925 original size:12 final size:12
Alignment explanation
Indices: 68088908--68088933 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
68088898 TCACGTGTGT
68088908 AGTACTAAGTGC
1 AGTACTAAGTGC
68088920 AGTACTAAGTGC
1 AGTACTAAGTGC
68088932 AG
1 AG
68088934 GCTACTACGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.15, G:0.27, T:0.23
Consensus pattern (12 bp):
AGTACTAAGTGC
Found at i:68088995 original size:50 final size:50
Alignment explanation
Indices: 68088920--68089045 Score: 227
Period size: 50 Copynumber: 2.5 Consensus size: 50
68088910 TACTAAGTGC
68088920 AGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCAT-GTGTGT
1 AGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGT-ATCGTGTGT
*
68088970 AGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTTTCGTGTGT
1 AGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTATCGTGTGT
68089020 AGTACTAAGTGCAGGCTACTACGTGT
1 AGTACTAAGTGCAGGCTACTACGTGT
68089046 GCTGGATAAT
Statistics
Matches: 74, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
49 1 0.01
50 73 0.99
ACGTcount: A:0.24, C:0.15, G:0.29, T:0.32
Consensus pattern (50 bp):
AGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTATCGTGTGT
Found at i:68093427 original size:54 final size:54
Alignment explanation
Indices: 68093340--68093446 Score: 196
Period size: 54 Copynumber: 2.0 Consensus size: 54
68093330 TATTCCAAAA
*
68093340 TTGCGATGTGAATCTTAGGTCTCTGTCTAATACAATAGATAATGGTGCACCATG
1 TTGCGATGTGAATCTCAGGTCTCTGTCTAATACAATAGATAATGGTGCACCATG
*
68093394 TTGCGATGTGAATCTCAGGTCTCTGTCTGATACAATAGATAATGGTGCACCAT
1 TTGCGATGTGAATCTCAGGTCTCTGTCTAATACAATAGATAATGGTGCACCAT
68093447 ACAATCTCAT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (54 bp):
TTGCGATGTGAATCTCAGGTCTCTGTCTAATACAATAGATAATGGTGCACCATG
Found at i:68102944 original size:15 final size:16
Alignment explanation
Indices: 68102926--68102959 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
68102916 AAATTAAATT
68102926 AATTAACTAG-ATGCA
1 AATTAACTAGAATGCA
*
68102941 AATTAACTTGAATGCA
1 AATTAACTAGAATGCA
68102957 AAT
1 AAT
68102960 GAGATGAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 9 0.53
16 8 0.47
ACGTcount: A:0.47, C:0.12, G:0.12, T:0.29
Consensus pattern (16 bp):
AATTAACTAGAATGCA
Found at i:68107181 original size:42 final size:42
Alignment explanation
Indices: 68107122--68107285 Score: 161
Period size: 42 Copynumber: 3.9 Consensus size: 42
68107112 ATAAGGTTAC
* * * *
68107122 TGAGACTACGTGTAAGACCATTTCTGGGATATGGCATCAATA
1 TGAGACTTCATGTAAGACCATATCTGGGATATGGCATCGATA
*
68107164 TGAGACTTCATGTAAGACCATATCTGGGATATGGCATTGATA
1 TGAGACTTCATGTAAGACCATATCTGGGATATGGCATCGATA
* ** * * *
68107206 TGAGATTTTTTGTAAGACCATAGCTGGGCTATTGGCAACGATA
1 TGAGACTTCATGTAAGACCATATCTGGGATA-TGGCATCGATA
** *
68107249 CAAGA-TTACATGTAAGACCTTAT-TCGGGATATGGCAT
1 TGAGACTT-CATGTAAGACCATATCT-GGGATATGGCAT
68107286 TGGTACAGTA
Statistics
Matches: 99, Mismatches: 20, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
42 71 0.72
43 28 0.28
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.30
Consensus pattern (42 bp):
TGAGACTTCATGTAAGACCATATCTGGGATATGGCATCGATA
Found at i:68108292 original size:13 final size:13
Alignment explanation
Indices: 68108274--68108308 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
68108264 ACACATGGGC
68108274 GTGTGACTTGGCT
1 GTGTGACTTGGCT
68108287 GTGTGACTTGGCT
1 GTGTGACTTGGCT
68108300 GTGTGACTT
1 GTGTGACTT
68108309 CAATTTGTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.09, C:0.14, G:0.37, T:0.40
Consensus pattern (13 bp):
GTGTGACTTGGCT
Found at i:68110167 original size:43 final size:43
Alignment explanation
Indices: 68110062--68110173 Score: 124
Period size: 44 Copynumber: 2.6 Consensus size: 43
68110052 TTTTTTTTTG
*
68110062 TGTAAGACCACGTCTGGGATGTTGGCATCAATTTGAGATTTACG
1 TGTAAGACCACGTCTGGGATGTTGGCATCAATTT-AGATTTACA
*
68110106 TGTAAGATCC-TGTCTGGGATAG-TGGCATCGATATTT-GA-TTACA
1 TGTAAGA-CCACGTCTGGGAT-GTTGGCATC-A-ATTTAGATTTACA
*
68110149 TGTAAGACCACGTCTGGGACGTTGG
1 TGTAAGACCACGTCTGGGATGTTGG
68110174 TATTGTATGA
Statistics
Matches: 58, Mismatches: 4, Indels: 13
0.77 0.05 0.17
Matches are distributed among these distances:
42 3 0.05
43 22 0.38
44 25 0.43
45 4 0.07
46 4 0.07
ACGTcount: A:0.24, C:0.16, G:0.29, T:0.31
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGATGTTGGCATCAATTTAGATTTACA
Found at i:68116891 original size:46 final size:46
Alignment explanation
Indices: 68116838--68117020 Score: 285
Period size: 46 Copynumber: 4.0 Consensus size: 46
68116828 TATATATACA
* * * *
68116838 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* **
68116884 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTTATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
68116930 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
68116976 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
68117021 ATACACTTCC
Statistics
Matches: 127, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 127 1.00
ACGTcount: A:0.25, C:0.31, G:0.09, T:0.35
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:68117063 original size:22 final size:22
Alignment explanation
Indices: 68117037--68117112 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
68117027 TTCCACGTTC
68117037 ATCACATTGGCCATTCTGCCTT
1 ATCACATTGGCCATTCTGCCTT
*
68117059 ATCACATATATG-CATGT-T-CACATT
1 ATCACAT-T-GGCCAT-TCTGC-C-TT
*
68117083 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCTGCCTT
68117106 ATCACAT
1 ATCACAT
68117113 ATATACATAT
Statistics
Matches: 42, Mismatches: 3, Indels: 18
0.67 0.05 0.29
Matches are distributed among these distances:
22 15 0.36
23 10 0.24
24 9 0.21
25 8 0.19
ACGTcount: A:0.25, C:0.29, G:0.12, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCTGCCTT
Found at i:68117065 original size:47 final size:47
Alignment explanation
Indices: 68116994--68117325 Score: 468
Period size: 47 Copynumber: 7.1 Consensus size: 47
68116984 ACACATTTCG
* * * * * *
68116994 CATTAGCCATTCGGCTTTACCACATATATACACT-TCCACGTTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCA-TGTTCACATTCATCA
*
68117041 CATTGGCCATTCTGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
68117088 CATTGGCCATTCGGCCTTATCACATATATACATATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
68117135 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * *
68117182 CATTGGCCATTTGACCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
68117229 CATTGGCCATTCGGCCTTATCTCATATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * * **
68117276 CATTTGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
68117323 CAT
1 CAT
68117326 AAAATCCTAA
Statistics
Matches: 259, Mismatches: 25, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
46 1 0.00
47 258 1.00
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.34
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:68117182 original size:25 final size:25
Alignment explanation
Indices: 68117153--68117230 Score: 85
Period size: 23 Copynumber: 3.2 Consensus size: 25
68117143 ATTCGGCCTT
68117153 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
* *
68117178 AT--CACAT-TGGCCAT-TTGACCTT-
1 ATCACACATAT-G-CATGTTCACATTC
68117200 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
68117225 ATCACA
1 ATCACA
68117231 TTGGCCATTC
Statistics
Matches: 42, Mismatches: 4, Indels: 14
0.70 0.07 0.23
Matches are distributed among these distances:
22 3 0.07
23 15 0.36
24 15 0.36
25 9 0.21
ACGTcount: A:0.31, C:0.28, G:0.09, T:0.32
Consensus pattern (25 bp):
ATCACACATATGCATGTTCACATTC
Found at i:68117205 original size:22 final size:22
Alignment explanation
Indices: 68117037--68117205 Score: 67
Period size: 23 Copynumber: 7.3 Consensus size: 22
68117027 TTCCACGTTC
68117037 ATCACATTGGCCATTCTG-CCTT
1 ATCACATTGGCCATT-TGACCTT
* * *
68117059 ATCACATATATG-CATGTTCACATT
1 ATCACAT-T-GGCCAT-TTGACCTT
* *
68117083 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTTGACCTT
*** * *
68117106 ATCACATATATACATATTCACATT
1 ATCACAT-TGGCCAT-TTGACCTT
* *
68117130 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTTGACCTT
* *
68117153 ATCACACATAT-G-CATGTTCACATT
1 AT--CACAT-TGGCCAT-TTGACCTT
68117177 CATCACATTGGCCATTTGACCTT
1 -ATCACATTGGCCATTTGACCTT
68117200 ATCACA
1 ATCACA
68117206 CATATGCATG
Statistics
Matches: 103, Mismatches: 28, Indels: 32
0.63 0.17 0.20
Matches are distributed among these distances:
22 23 0.22
23 33 0.32
24 30 0.29
25 17 0.17
ACGTcount: A:0.27, C:0.28, G:0.11, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTTGACCTT
Found at i:68124819 original size:43 final size:43
Alignment explanation
Indices: 68124772--68124937 Score: 131
Period size: 43 Copynumber: 3.9 Consensus size: 43
68124762 ATTACCGAGA
* *
68124772 TGTGATTACATGTAAGACCATGTCTGGGATATTAGCATTGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTAGCATCGTAT
* * * *
68124815 TGTGATTACGTGTAAGACCATGTTTGGAACATTGGCATCGTTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTAGCATCG-TAT
** * * * * *
68124859 T-CAATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATCG-AT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTAGCATCGTAT
** * * *
68124900 AAATGATAACATGTAAGACCATATCTGGGATA-TAGCAT
1 -TGTGATTACATGTAAGACCATGTCTGGGACATTAGCAT
68124938 TGTACGAGCT
Statistics
Matches: 97, Mismatches: 23, Indels: 7
0.76 0.18 0.06
Matches are distributed among these distances:
41 2 0.02
42 5 0.05
43 86 0.89
44 4 0.04
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTGGGACATTAGCATCGTAT
Found at i:68125685 original size:22 final size:23
Alignment explanation
Indices: 68125643--68125687 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
68125633 ATGTAAATTT
68125643 TATGATTTTGGCATATTGATTTGG
1 TATGATTTTGGCATA-TGATTTGG
68125667 TATG-TTTTGGCCATA-GATTTG
1 TATGATTTTGG-CATATGATTTG
68125688 AGTAGTTAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 6 0.30
23 6 0.30
24 8 0.40
ACGTcount: A:0.20, C:0.07, G:0.24, T:0.49
Consensus pattern (23 bp):
TATGATTTTGGCATATGATTTGG
Found at i:68128755 original size:33 final size:34
Alignment explanation
Indices: 68128698--68128769 Score: 92
Period size: 33 Copynumber: 2.1 Consensus size: 34
68128688 ATAGGCCCAC
* * *
68128698 ACTGTTACTGCATAGCGCTTAGGCCCAGACTG-T
1 ACTGTTAATGAATAGCGCTCAGGCCCAGACTGTT
* *
68128731 ACTGTTAATGAATAGGGCTCAGGCCCAGATTGTT
1 ACTGTTAATGAATAGCGCTCAGGCCCAGACTGTT
68128765 ACTGT
1 ACTGT
68128770 ATGCACTATT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
33 27 0.82
34 6 0.18
ACGTcount: A:0.24, C:0.22, G:0.25, T:0.29
Consensus pattern (34 bp):
ACTGTTAATGAATAGCGCTCAGGCCCAGACTGTT
Found at i:68145953 original size:32 final size:32
Alignment explanation
Indices: 68145858--68145966 Score: 96
Period size: 32 Copynumber: 3.4 Consensus size: 32
68145848 ATACAACTTT
* * * *
68145858 AAGCCTTCAGTAGCGGTATTATAATTGGCACA
1 AAGCCATCAGTAACGGTAATATAATCGGCACA
* * *
68145890 AAGCCATCGGTAACTGTAATA-AATCTAGCACA
1 AAGCCATCAGTAACGGTAATATAATC-GGCACA
* *
68145922 TAGCCATCAGTGACGGTAATATAATCGGCACA
1 AAGCCATCAGTAACGGTAATATAATCGGCACA
*
68145954 CAA-CCATGAGTAA
1 -AAGCCATCAGTAA
68145967 ATATGGTTGA
Statistics
Matches: 59, Mismatches: 15, Indels: 6
0.74 0.19 0.08
Matches are distributed among these distances:
31 3 0.05
32 51 0.86
33 5 0.08
ACGTcount: A:0.37, C:0.21, G:0.19, T:0.23
Consensus pattern (32 bp):
AAGCCATCAGTAACGGTAATATAATCGGCACA
Found at i:68146447 original size:27 final size:27
Alignment explanation
Indices: 68146409--68146476 Score: 102
Period size: 27 Copynumber: 2.5 Consensus size: 27
68146399 ATAGTCCAAG
* *
68146409 TCAGTCATTTTACCCTACAAGGGTATT
1 TCAGTAATTTTACACTACAAGGGTATT
68146436 TCAGTAATTTTACACTACAAGGGTATT
1 TCAGTAATTTTACACTACAAGGGTATT
68146463 TC-GATAATTTTACA
1 TCAG-TAATTTTACA
68146477 AACTGGGAGT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
26 1 0.03
27 37 0.97
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (27 bp):
TCAGTAATTTTACACTACAAGGGTATT
Found at i:68152902 original size:47 final size:47
Alignment explanation
Indices: 68152830--68153093 Score: 233
Period size: 47 Copynumber: 5.7 Consensus size: 47
68152820 GGGAAAGGTA
* *
68152830 CCGATGCCATGTCCCAGACACGGTCTTACACT-AGCTCAT-ATCTCAT-G
1 CCGATG-CATGTCCCAGACATGGTCTTACACTGA-CT-ATCATCTCGTAG
* *
68152877 TCGATGCCATGTCCCAGACATGGTCTTACATTGACTATCATCTCGTAG
1 CCGATG-CATGTCCCAGACATGGTCTTACACTGACTATCATCTCGTAG
*
68152925 CCGATGTATGTCCCAGACATGGTCTTACACTGACTATCATCTCGTAG
1 CCGATGCATGTCCCAGACATGGTCTTACACTGACTATCATCTCGTAG
* * * *
68152972 CCGATGTATGTCCCAGACAT-GTCTTACATTGGCT-TACGTCTCG-AGG
1 CCGATGCATGTCCCAGACATGGTCTTACACTGACTAT-CATCTCGTA-G
* * * * * *
68153018 CCGATGCATGCCCCAAACAT-GTCTTACAGTGGCTCTCATAAT-GTCA-
1 CCGATGCATGTCCCAGACATGGTCTTACACTGACTATCAT-CTCGT-AG
* *
68153064 CTGATGCATGTCCTAGACAT-GTCTTACACT
1 CCGATGCATGTCCCAGACATGGTCTTACACT
68153094 AGCCCAGAAT
Statistics
Matches: 187, Mismatches: 21, Indels: 19
0.82 0.09 0.08
Matches are distributed among these distances:
45 2 0.01
46 79 0.42
47 98 0.52
48 8 0.04
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (47 bp):
CCGATGCATGTCCCAGACATGGTCTTACACTGACTATCATCTCGTAG
Found at i:68153091 original size:92 final size:93
Alignment explanation
Indices: 68152878--68153091 Score: 231
Period size: 92 Copynumber: 2.3 Consensus size: 93
68152868 TATCTCATGT
* * *
68152878 CGATGCCATGTCCCAGACATGGTCTTACATTGACTATCATCTCGTAGCCGATGTATGTCCCAGAC
1 CGATG-CATGTCCCAGACAT-GTCTTACATTGACTATCATCTCGTAGCCGATGCATGCCCCAAAC
*
68152943 ATGGTCTTACACTGACTATCATCTCGTAGC
64 ATGGTCTTACACTGACTATCATATCGTAGC
* * *
68152973 CGATGTATGTCCCAGACATGTCTTACATTGGCT-TACGTCTCG-AGGCCGATGCATGCCCCAAAC
1 CGATGCATGTCCCAGACATGTCTTACATTGACTAT-CATCTCGTA-GCCGATGCATGCCCCAAAC
* * *
68153036 AT-GTCTTACAGTGGCTCTCATAAT-GTCA-C
64 ATGGTCTTACACTGACTATCAT-ATCGT-AGC
* *
68153065 TGATGCATGTCCTAGACATGTCTTACA
1 CGATGCATGTCCCAGACATGTCTTACA
68153092 CTAGCCCAGA
Statistics
Matches: 102, Mismatches: 13, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
92 45 0.44
93 39 0.38
94 13 0.13
95 5 0.05
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (93 bp):
CGATGCATGTCCCAGACATGTCTTACATTGACTATCATCTCGTAGCCGATGCATGCCCCAAACAT
GGTCTTACACTGACTATCATATCGTAGC
Found at i:68167107 original size:21 final size:20
Alignment explanation
Indices: 68167079--68167117 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
68167069 CTTGACACAG
*
68167079 GGGCACACGCTCGTGTGAAA
1 GGGCACACGCCCGTGTGAAA
68167099 GGGCAACACGCCCGTGTGA
1 GGGC-ACACGCCCGTGTGA
68167118 CCATTTCGAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.23, C:0.28, G:0.36, T:0.13
Consensus pattern (20 bp):
GGGCACACGCCCGTGTGAAA
Found at i:68174634 original size:46 final size:46
Alignment explanation
Indices: 68174584--68174753 Score: 195
Period size: 46 Copynumber: 3.7 Consensus size: 46
68174574 TTGAGCATCC
*
68174584 GAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
* * * *
68174630 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCT
* *
68174677 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
*
68174723 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
68174754 GGGGCGGGTT
Statistics
Matches: 103, Mismatches: 12, Indels: 18
0.77 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 56 0.54
47 28 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.31
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
Found at i:68174737 original size:93 final size:93
Alignment explanation
Indices: 68174578--68174748 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
68174568 GGATGGTTGA
* * *
68174578 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTGAACTCGTTGAGT
68174643 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
68174671 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTGAACTCGTTGAGT
68174736 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
68174749 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:68176157 original size:19 final size:19
Alignment explanation
Indices: 68176133--68176180 Score: 60
Period size: 20 Copynumber: 2.5 Consensus size: 19
68176123 GTTTTTGTTC
68176133 TGTTCTATTTGATTTATTT
1 TGTTCTATTTGATTTATTT
* *
68176152 TGTTCTATTTTGTTTTGTTT
1 TGTTCTA-TTTGATTTATTT
*
68176172 GGTTCTATT
1 TGTTCTATT
68176181 ATACTACCAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 9 0.36
20 16 0.64
ACGTcount: A:0.10, C:0.06, G:0.15, T:0.69
Consensus pattern (19 bp):
TGTTCTATTTGATTTATTT
Found at i:68181872 original size:18 final size:18
Alignment explanation
Indices: 68181824--68181883 Score: 63
Period size: 18 Copynumber: 3.4 Consensus size: 18
68181814 AGTCTCTCTC
68181824 TCTTTTTCAATCTTC-TTT
1 TCTTTTTCAAT-TTCTTTT
**
68181842 TCTTGATCAATTTCTTTT
1 TCTTTTTCAATTTCTTTT
*
68181860 TCTTTTTCGA-TT-TTTT
1 TCTTTTTCAATTTCTTTT
68181876 TCTTTTTC
1 TCTTTTTC
68181884 TCATTCTCTT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
16 12 0.33
17 5 0.14
18 19 0.53
ACGTcount: A:0.10, C:0.18, G:0.03, T:0.68
Consensus pattern (18 bp):
TCTTTTTCAATTTCTTTT
Found at i:68184890 original size:51 final size:51
Alignment explanation
Indices: 68184830--68184933 Score: 190
Period size: 51 Copynumber: 2.0 Consensus size: 51
68184820 AACATATTAA
*
68184830 AACCATCTATTAAGCTAAACATAATTATGAGCTAAGCTAATTAACTAATTT
1 AACCATCTATTAAGCTAAACATAATTATGAGCTAAACTAATTAACTAATTT
*
68184881 AACCATCTATTAAGCTAAACATAATTATGAGCTAAATTAATTAACTAATTT
1 AACCATCTATTAAGCTAAACATAATTATGAGCTAAACTAATTAACTAATTT
68184932 AA
1 AA
68184934 ATAACACATT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.45, C:0.14, G:0.07, T:0.34
Consensus pattern (51 bp):
AACCATCTATTAAGCTAAACATAATTATGAGCTAAACTAATTAACTAATTT
Found at i:68186580 original size:21 final size:21
Alignment explanation
Indices: 68186554--68186635 Score: 78
Period size: 21 Copynumber: 3.9 Consensus size: 21
68186544 ACACACCAAT
68186554 AGAAGCTCATAAGAGTTGAAC
1 AGAAGCTCATAAGAGTTGAAC
* *
68186575 AGAAGCTCGA-AAGAGCTT-CAT
1 AGAAGCTC-ATAAGAG-TTGAAC
* * *
68186596 AGAAGCTCGTGAGAGCTGAAC
1 AGAAGCTCATAAGAGTTGAAC
*
68186617 AGAAGCTCTTAAGAGTTGA
1 AGAAGCTCATAAGAGTTGA
68186636 TCCACCCAAA
Statistics
Matches: 47, Mismatches: 10, Indels: 8
0.72 0.15 0.12
Matches are distributed among these distances:
20 1 0.02
21 43 0.91
22 3 0.06
ACGTcount: A:0.38, C:0.16, G:0.27, T:0.20
Consensus pattern (21 bp):
AGAAGCTCATAAGAGTTGAAC
Found at i:68190751 original size:46 final size:46
Alignment explanation
Indices: 68190611--68190782 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
68190601 ATTTGGGCAT
*
68190611 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-A-GT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * *
68190655 CCGAACTCGTTGAGTTGAGT-CGAGTTC-GTGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
*
68190699 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* *
68190747 CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
68190783 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 9, Indels: 22
0.78 0.07 0.16
Matches are distributed among these distances:
40 5 0.05
42 2 0.02
43 7 0.07
44 21 0.20
46 54 0.50
47 7 0.07
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.20, C:0.21, G:0.31, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:68193744 original size:15 final size:15
Alignment explanation
Indices: 68193705--68193783 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
68193695 GTATCTTGGG
*
68193705 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
68193720 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
68193735 TTTCTTTATTC-GGG
1 TTTCTTTATTCTGGA
*
68193749 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
68193764 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
68193778 TTTCTT
1 TTTCTT
68193784 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
13 2 0.04
14 17 0.32
15 32 0.60
16 2 0.04
ACGTcount: A:0.10, C:0.18, G:0.14, T:0.58
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:68193768 original size:29 final size:29
Alignment explanation
Indices: 68193696--68193782 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 29
68193686 CATAGTATCG
* * * *
68193696 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTC-GGATTTCTC
*
68193726 TAT-TCTGGATTTCTTTATTCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCGGATTTCTC
*
68193755 TATCTTGGATTTCTTTATTCGGTTTTCT
1 TATCTTGGATTTCTTTATTCGGATTTCT
68193783 TGTTATCTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 32 0.65
30 17 0.35
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.56
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCGGATTTCTC
Found at i:68196218 original size:46 final size:46
Alignment explanation
Indices: 68196168--68196343 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
68196158 TATTTGGGCA
68196168 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
68196214 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
* *
68196261 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * *
68196307 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
68196344 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 32 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.19, C:0.22, G:0.31, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:68196323 original size:93 final size:93
Alignment explanation
Indices: 68196164--68196336 Score: 310
Period size: 93 Copynumber: 1.9 Consensus size: 93
68196154 TGGATATTTG
* *
68196164 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
68196229 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
68196257 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
68196322 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
68196337 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.31, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:68212367 original size:48 final size:48
Alignment explanation
Indices: 68212307--68212398 Score: 125
Period size: 48 Copynumber: 1.9 Consensus size: 48
68212297 GGAATTCTAA
* *
68212307 TGAATCCTTTATTGTTGCG-AGTT-GAGCTAACTTAGGCGTTTTTACGGT
1 TGAATCCATTATTGGTG-GAAGTTAG-GCTAACTTAGGCGTTTTTACGGT
*
68212355 TGAATCCATTATTGGTGGAAGTTAGGCTGACTTAGGCGTTTTTA
1 TGAATCCATTATTGGTGGAAGTTAGGCTAACTTAGGCGTTTTTA
68212399 AGCCAAGAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
47 1 0.03
48 37 0.95
49 1 0.03
ACGTcount: A:0.21, C:0.13, G:0.26, T:0.40
Consensus pattern (48 bp):
TGAATCCATTATTGGTGGAAGTTAGGCTAACTTAGGCGTTTTTACGGT
Found at i:68214883 original size:48 final size:48
Alignment explanation
Indices: 68214823--68214914 Score: 125
Period size: 48 Copynumber: 1.9 Consensus size: 48
68214813 GGAATTCTGC
* *
68214823 TGAATCCTTTATTGTTGCG-AGTT-GAGCTAACTTAGGCGTTTTTACAGT
1 TGAATCCATTATTGGTG-GAAGTTAG-GCTAACTTAGGCGTTTTTACAGT
*
68214871 TGAATCCATTATTGGTGGAAGTTAGGCTGACTTAGGCGTTTTTA
1 TGAATCCATTATTGGTGGAAGTTAGGCTAACTTAGGCGTTTTTA
68214915 AGCCAAGAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
47 1 0.03
48 37 0.95
49 1 0.03
ACGTcount: A:0.22, C:0.13, G:0.25, T:0.40
Consensus pattern (48 bp):
TGAATCCATTATTGGTGGAAGTTAGGCTAACTTAGGCGTTTTTACAGT
Found at i:68226287 original size:40 final size:40
Alignment explanation
Indices: 68226232--68226449 Score: 327
Period size: 40 Copynumber: 5.5 Consensus size: 40
68226222 CGGATGATAA
* *
68226232 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
68226272 CCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
68226312 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
68226352 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-AT
*
68226393 -CGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
68226432 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
68226450 TACTTGGTTT
Statistics
Matches: 166, Mismatches: 8, Indels: 9
0.91 0.04 0.05
Matches are distributed among these distances:
39 19 0.11
40 144 0.87
41 3 0.02
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:68229081 original size:99 final size:99
Alignment explanation
Indices: 68228892--68229081 Score: 326
Period size: 99 Copynumber: 1.9 Consensus size: 99
68228882 ATTGTGAGGC
* *
68228892 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACTA
1 CACGTGTGTAGTAATAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACTA
** *
68228957 AGTGCAGGCTACTACGTGTATCAGATGGTTAGGT
66 AGTGCAGGCTACTACGCATACCAGATGGTTAGGT
68228991 CACGTGTGTAGTAATAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACTA
1 CACGTGTGTAGTAATAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACTA
*
68229056 AGTGCAGGCTACTATGCATACCAGAT
66 AGTGCAGGCTACTACGCATACCAGAT
68229082 AGCCTTGTCT
Statistics
Matches: 85, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
99 85 1.00
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.28
Consensus pattern (99 bp):
CACGTGTGTAGTAATAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACTA
AGTGCAGGCTACTACGCATACCAGATGGTTAGGT
Found at i:68229082 original size:49 final size:49
Alignment explanation
Indices: 68228896--68229069 Score: 276
Period size: 49 Copynumber: 3.5 Consensus size: 49
68228886 TGAGGCCACG
*
68228896 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
* ** * *
68228945 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCGCA
*
68228995 TGTGTAGTAATAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
68229044 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
68229070 TGCATACCAG
Statistics
Matches: 111, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
49 68 0.61
50 43 0.39
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
Found at i:68233860 original size:27 final size:27
Alignment explanation
Indices: 68233818--68233871 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
68233808 GTGCCATGTG
* *
68233818 AAATTGAATGGCAAATTATTGTTACAT
1 AAATTGAATGGCAAATTACTATTACAT
**
68233845 AAATTGAATGTTAAATTACTATTACAT
1 AAATTGAATGGCAAATTACTATTACAT
68233872 GGGTTGTATG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.43, C:0.07, G:0.11, T:0.39
Consensus pattern (27 bp):
AAATTGAATGGCAAATTACTATTACAT
Found at i:68234296 original size:100 final size:100
Alignment explanation
Indices: 68234123--68234316 Score: 282
Period size: 100 Copynumber: 1.9 Consensus size: 100
68234113 TATTGTGAGG
* ** *
68234123 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTATCAAATAATTGGTCACATGTGTAGTACT
*
68234188 AAGTGCAGGCTACTATGCGTACCCGATAACTTCGA
66 AAGTGCAGGATACTATGCGTACCCGATAACTTCGA
* **
68234223 TCACGTGTGTCGTACTAAGTGCAAGCTACTACGTGTATCAAATGGTTAGGTCACATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTATCAAATAATT-GGTCACATGTGTAGTAC
* *
68234288 -AAGTGCAGGATACTATGTGTACCGGATAA
65 TAAGTGCAGGATACTATGCGTACCCGATAA
68234317 TTGGTCGTAT
Statistics
Matches: 83, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
100 67 0.81
101 16 0.19
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.29
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTATCAAATAATTGGTCACATGTGTAGTACT
AAGTGCAGGATACTATGCGTACCCGATAACTTCGA
Found at i:68234348 original size:49 final size:50
Alignment explanation
Indices: 68234120--68234339 Score: 230
Period size: 49 Copynumber: 4.4 Consensus size: 50
68234110 ATCTATTGTG
* * *
68234120 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATT
* * *
68234170 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAA-TT
* * * * * * * ** **
68234220 CGATCACGTGTGTCGTACTAAGTGCAAGCTACTACGTGTATCAAATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATT
*
68234270 AGGTCACATGTGTAGTAC-AAGTGCAGGATACTATGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATT
**
68234319 -GGTCGTATGTGTAGTACTAAG
1 AGGTCACATGTGTAGTACTAAG
68234340 CGCGGGATAT
Statistics
Matches: 135, Mismatches: 32, Indels: 7
0.78 0.18 0.04
Matches are distributed among these distances:
48 15 0.11
49 67 0.50
50 18 0.13
51 35 0.26
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATT
Found at i:68235715 original size:62 final size:62
Alignment explanation
Indices: 68235639--68235763 Score: 241
Period size: 62 Copynumber: 2.0 Consensus size: 62
68235629 GTGTTCAAAA
*
68235639 AGTTTTGAATTAAATGAAATTTTATGGCCCGATTTTTGACTATGTGTATGGTTAAGTCTGGT
1 AGTTTTGAATTAAATGAAATTTTATGGCCCGATTTTCGACTATGTGTATGGTTAAGTCTGGT
68235701 AGTTTTGAATTAAATGAAATTTTATGGCCCGATTTTCGACTATGTGTATGGTTAAGTCTGGT
1 AGTTTTGAATTAAATGAAATTTTATGGCCCGATTTTCGACTATGTGTATGGTTAAGTCTGGT
68235763 A
1 A
68235764 ATGCCTCGTA
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
62 62 1.00
ACGTcount: A:0.26, C:0.09, G:0.22, T:0.42
Consensus pattern (62 bp):
AGTTTTGAATTAAATGAAATTTTATGGCCCGATTTTCGACTATGTGTATGGTTAAGTCTGGT
Found at i:68242161 original size:27 final size:27
Alignment explanation
Indices: 68242131--68242237 Score: 128
Period size: 27 Copynumber: 3.9 Consensus size: 27
68242121 GGCTGCCAAA
* *
68242131 ACAGATAATGTGACAGAGTCACCAGAT
1 ACAGATAATGTGGCAGAGCCACCAGAT
68242158 ACAGATAATCGTGGCAGAGCCACCAGA-
1 ACAGATAAT-GTGGCAGAGCCACCAGAT
* *
68242185 ATAGAAATATGTGGCAGAGCCACCAGAT
1 ACAGATA-ATGTGGCAGAGCCACCAGAT
*
68242213 -CAGATAATTGTGGCATAGCCACCAG
1 ACAGATAA-TGTGGCAGAGCCACCAG
68242238 GACGCTTCCT
Statistics
Matches: 69, Mismatches: 7, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
26 1 0.01
27 51 0.74
28 17 0.25
ACGTcount: A:0.37, C:0.21, G:0.24, T:0.17
Consensus pattern (27 bp):
ACAGATAATGTGGCAGAGCCACCAGAT
Found at i:68243683 original size:24 final size:24
Alignment explanation
Indices: 68243656--68243706 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
68243646 CTAGATTTCC
** *
68243656 TCCCTTATCTGCTCTTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
68243680 TCCCTTATCAACTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
68243704 TCC
1 TCC
68243707 TGACAGACTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.24, C:0.37, G:0.02, T:0.37
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:68250777 original size:34 final size:34
Alignment explanation
Indices: 68250749--68250813 Score: 94
Period size: 34 Copynumber: 1.9 Consensus size: 34
68250739 TTGCTATCGA
* *
68250749 ATTGATTTTAGATAAGCATATTAATTGCTACCAT
1 ATTGATATGAGATAAGCATATTAATTGCTACCAT
* *
68250783 ATTGATATGATATAAGCATATTAAATGCTAC
1 ATTGATATGAGATAAGCATATTAATTGCTAC
68250814 TGGTTTGATC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.38, C:0.11, G:0.12, T:0.38
Consensus pattern (34 bp):
ATTGATATGAGATAAGCATATTAATTGCTACCAT
Found at i:68253136 original size:59 final size:59
Alignment explanation
Indices: 68253044--68253163 Score: 240
Period size: 59 Copynumber: 2.0 Consensus size: 59
68253034 TTGACTAAAG
68253044 TATAACATTCATATGGCTAAATGAAAAACTTCATATATGCACATTCTCATAATCATACT
1 TATAACATTCATATGGCTAAATGAAAAACTTCATATATGCACATTCTCATAATCATACT
68253103 TATAACATTCATATGGCTAAATGAAAAACTTCATATATGCACATTCTCATAATCATACT
1 TATAACATTCATATGGCTAAATGAAAAACTTCATATATGCACATTCTCATAATCATACT
68253162 TA
1 TA
68253164 CTTCACGCTT
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 61 1.00
ACGTcount: A:0.41, C:0.18, G:0.07, T:0.34
Consensus pattern (59 bp):
TATAACATTCATATGGCTAAATGAAAAACTTCATATATGCACATTCTCATAATCATACT
Found at i:68253433 original size:40 final size:40
Alignment explanation
Indices: 68253366--68253542 Score: 225
Period size: 40 Copynumber: 4.5 Consensus size: 40
68253356 ACCCAACTAT
*
68253366 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
68253405 CCTCGGGTCTTAGCCCGGATATAGCAACTTGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
68253445 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* *
68253485 CTTCGGGACATAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
68253525 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
68253543 TTATCATCCG
Statistics
Matches: 118, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.01
39 12 0.10
40 103 0.87
41 2 0.02
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:68260342 original size:40 final size:40
Alignment explanation
Indices: 68260112--68260335 Score: 305
Period size: 40 Copynumber: 5.7 Consensus size: 40
68260102 TTGAATGATG
* * * *
68260112 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
68260152 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACT-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
68260191 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
68260230 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
68260270 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
68260311 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
68260336 AACGAGTAGC
Statistics
Matches: 167, Mismatches: 11, Indels: 12
0.88 0.06 0.06
Matches are distributed among these distances:
38 23 0.14
39 23 0.14
40 111 0.66
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:68290300 original size:45 final size:47
Alignment explanation
Indices: 68290234--68290542 Score: 215
Period size: 49 Copynumber: 6.7 Consensus size: 47
68290224 TCGGTACGCA
*
68290234 TAGTAG-CTGCACATA-TACTACACATG-GACCATTATCCGTACAC-
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCATTATCCGTACACG
* **
68290277 TAGTAGCCTGCACTTAGTACTACACA-CTGACCAATTATATGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC-ATTAT-CCGTACACG
* *
68290325 TAGTAG--TGCAC-TAGTACTACAGTATAGTGACCAATATCCAGT--ACG
1 TAGTAGCCTGCACTTAGTACTACA-CAT-GTGACCATTATCC-GTACACG
* **
68290370 T--TAG--TGCACTTA-TACTACACACGTGACCATTATATGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCATTATCCGTACACG
* *
68290412 TAGTAGCCTGCACTTAGTACCACACACGTGACC-TTA-CCATTTGATACA-G
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCATTATCC----G-TACACG
* * * * *
68290461 TAGTAGCCTGCACTTA-TACTACACATGTGATCACAGTTTTCGGGACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-C-CA-TTATCCGTACACG
*
68290510 TAGTAGCCTGCACTTAGTACTACACATGCGACC
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC
68290543 TCACAATAGA
Statistics
Matches: 211, Mismatches: 25, Indels: 55
0.73 0.09 0.19
Matches are distributed among these distances:
40 2 0.01
41 10 0.05
42 5 0.02
43 21 0.10
44 13 0.06
45 27 0.13
46 22 0.10
47 27 0.13
48 26 0.12
49 37 0.18
50 18 0.09
52 2 0.01
53 1 0.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (47 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCATTATCCGTACACG
Found at i:68290345 original size:90 final size:92
Alignment explanation
Indices: 68290234--68290490 Score: 261
Period size: 90 Copynumber: 2.8 Consensus size: 92
68290224 TCGGTACGCA
*
68290234 TAGTAGCTGCACATA-TACTACACATG-GACCATTATCC-GTACACTAGTAGCCTGCACTTAGTA
1 TAGTAGCTGCACATAGTACTACACATGTGACCATTATCCTGTACAGTAGTAGCCTGCACTTA-TA
68290296 CTACACAC-TGACCAATTATATGGTACACG
65 CTACACACGTGACC-ATTATAT-GTACACG
* * *
68290325 TAGTAG-TGCAC-TAGTACTACAGTATAGTGACCAATATCCAGTAC-GT--TAG--TGCACTTAT
1 TAGTAGCTGCACATAGTACTACA-CAT-GTGACCATTATCCTGTACAGTAGTAGCCTGCACTTAT
68290383 ACTACACACGTGACCATTATATGTACACG
64 ACTACACACGTGACCATTATATGTACACG
* * *
68290412 TAGTAGCCTGCACTTAGTACCACACACGTGACC-TTA-CCATTTGATACAGTAGTAGCCTGCACT
1 TAGTAG-CTGCACATAGTACTACACATGTGACCATTATCC---TG-TACAGTAGTAGCCTGCACT
*
68290475 TATACTACACATGTGA
61 TATACTACACACGTGA
68290491 TCACAGTTTT
Statistics
Matches: 139, Mismatches: 9, Indels: 32
0.77 0.05 0.18
Matches are distributed among these distances:
86 2 0.01
87 15 0.11
88 23 0.17
89 22 0.16
90 24 0.17
91 13 0.09
92 1 0.01
93 14 0.10
94 4 0.03
95 21 0.15
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (92 bp):
TAGTAGCTGCACATAGTACTACACATGTGACCATTATCCTGTACAGTAGTAGCCTGCACTTATAC
TACACACGTGACCATTATATGTACACG
Found at i:68295646 original size:49 final size:49
Alignment explanation
Indices: 68295591--68295822 Score: 245
Period size: 49 Copynumber: 4.7 Consensus size: 49
68295581 CTGGTACGCA
* *
68295591 TAGTAGCTTGCACATAGTACTACACATGTGACCAATTATCCAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCAGTACACG
* ***
68295640 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATATGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCAGTACACG
* * *
68295689 TAGTAGCCTGCACTTAGTACCACACACGTGACC--TTA-CCATTTGATACATG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCA---G-TACACG
* * ** * *
68295739 TAGTAGCCTGCACTTAGTACTACACATGTGATCACAGTTTTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-C-CAATTATCCAGTACACG
*
68295790 TAGTAGCCTGCACTTAGTACTACACATGCGACC
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC
68295823 TCACAATAGA
Statistics
Matches: 154, Mismatches: 20, Indels: 18
0.80 0.10 0.09
Matches are distributed among these distances:
47 3 0.02
49 77 0.50
50 35 0.23
51 34 0.22
52 2 0.01
54 2 0.01
55 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCAGTACACG
Found at i:68298003 original size:15 final size:15
Alignment explanation
Indices: 68297983--68298019 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
68297973 CAAGATAGAA
68297983 AAACCCAGAATAAAG
1 AAACCCAGAATAAAG
*
68297998 AAACCCAGAGTAAAG
1 AAACCCAGAATAAAG
68298013 AAACCCA
1 AAACCCA
68298020 AGATACGATA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.57, C:0.24, G:0.14, T:0.05
Consensus pattern (15 bp):
AAACCCAGAATAAAG
Found at i:68301018 original size:49 final size:49
Alignment explanation
Indices: 68300944--68301181 Score: 296
Period size: 49 Copynumber: 4.8 Consensus size: 49
68300934 TAGCCAAAGC
* * * * *
68300944 TATCTGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACCAAT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* * *
68300993 TATCCAGTACACGTATTAGCCTGCACTTAGTACTACACACGTGACCAAT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* *
68301042 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC-AAT
* * * *
68301092 CATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGATCATAGT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCA-A-T
* * *
68301143 TTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACA
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACA
68301182 TGCGACCTCA
Statistics
Matches: 164, Mismatches: 22, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
49 86 0.52
50 44 0.27
51 34 0.21
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.26
Consensus pattern (49 bp):
TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:68303941 original size:43 final size:44
Alignment explanation
Indices: 68303882--68304032 Score: 191
Period size: 43 Copynumber: 3.5 Consensus size: 44
68303872 GAATACCGAG
* * *
68303882 ATGTGGTTACATGTAAGATCATGTCTGGGACATTGGCATTGTAT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
*
68303926 -TGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGT-T
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
* * * * *
68303968 ATATGATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATCG-AT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
*
68304011 ATGTGATAACATGTAAGACCAT
1 ATGTGATTACATGTAAGACCAT
68304033 ATCTAGGATA
Statistics
Matches: 92, Mismatches: 13, Indels: 5
0.84 0.12 0.05
Matches are distributed among these distances:
42 1 0.01
43 91 0.99
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (44 bp):
ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
Found at i:68307580 original size:47 final size:47
Alignment explanation
Indices: 68307526--68307619 Score: 188
Period size: 47 Copynumber: 2.0 Consensus size: 47
68307516 GAATTTAGTT
68307526 TTCTTTCTCCTACTTCTTCCCCATTTTCTTTTCTATATTCTTCTTTG
1 TTCTTTCTCCTACTTCTTCCCCATTTTCTTTTCTATATTCTTCTTTG
68307573 TTCTTTCTCCTACTTCTTCCCCATTTTCTTTTCTATATTCTTCTTTG
1 TTCTTTCTCCTACTTCTTCCCCATTTTCTTTTCTATATTCTTCTTTG
68307620 CATCATATTT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.09, C:0.30, G:0.02, T:0.60
Consensus pattern (47 bp):
TTCTTTCTCCTACTTCTTCCCCATTTTCTTTTCTATATTCTTCTTTG
Found at i:68307605 original size:26 final size:25
Alignment explanation
Indices: 68307524--68307603 Score: 89
Period size: 25 Copynumber: 3.3 Consensus size: 25
68307514 CTGAATTTAG
68307524 TTTTCTTTCTCCTACTTCTTCCCCA
1 TTTTCTTTCTCCTACTTCTTCCCCA
* *
68307549 TTTTCTTT-T-CTATATTCTT---CT
1 TTTTCTTTCTCCTA-CTTCTTCCCCA
68307570 TTGTTCTTTCTCCTACTTCTTCCCCA
1 TT-TTCTTTCTCCTACTTCTTCCCCA
68307596 TTTTCTTT
1 TTTTCTTT
68307604 TCTATATTCT
Statistics
Matches: 44, Mismatches: 4, Indels: 14
0.71 0.06 0.23
Matches are distributed among these distances:
21 3 0.07
22 6 0.14
23 9 0.20
24 9 0.20
25 14 0.32
26 3 0.07
ACGTcount: A:0.07, C:0.31, G:0.01, T:0.60
Consensus pattern (25 bp):
TTTTCTTTCTCCTACTTCTTCCCCA
Found at i:68307614 original size:24 final size:24
Alignment explanation
Indices: 68307539--68307615 Score: 81
Period size: 24 Copynumber: 3.2 Consensus size: 24
68307529 TTTCTCCTAC
68307539 TTCTTCCCCATTTTCTTTTCTATA
1 TTCTTCCCCATTTTCTTTTCTATA
* *
68307563 TTCTT---CTTTGTTCTTTCTCCTA-C
1 TTCTTCCCCATT-TTCTTT-T-CTATA
68307586 TTCTTCCCCATTTTCTTTTCTATA
1 TTCTTCCCCATTTTCTTTTCTATA
68307610 TTCTTC
1 TTCTTC
68307616 TTTGCATCAT
Statistics
Matches: 42, Mismatches: 4, Indels: 14
0.70 0.07 0.23
Matches are distributed among these distances:
21 3 0.07
22 6 0.14
23 9 0.21
24 15 0.36
25 6 0.14
26 3 0.07
ACGTcount: A:0.09, C:0.30, G:0.01, T:0.60
Consensus pattern (24 bp):
TTCTTCCCCATTTTCTTTTCTATA
Found at i:68307617 original size:27 final size:27
Alignment explanation
Indices: 68307538--68307617 Score: 77
Period size: 27 Copynumber: 3.2 Consensus size: 27
68307528 CTTTCTCCTA
68307538 CTTCTTCCCCATTTTCTTTTCTATATT
1 CTTCTTCCCCATTTTCTTTTCTATATT
* *
68307565 CTTCTT-----TGTTC-TTTCTCCTA--
1 CTTCTTCCCCATTTTCTTTTCT-ATATT
68307585 CTTCTTCCCCATTTTCTTTTCTATATT
1 CTTCTTCCCCATTTTCTTTTCTATATT
68307612 CTTCTT
1 CTTCTT
68307618 TGCATCATAT
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
20 6 0.15
21 5 0.12
22 6 0.15
25 6 0.15
26 5 0.12
27 12 0.30
ACGTcount: A:0.09, C:0.30, G:0.01, T:0.60
Consensus pattern (27 bp):
CTTCTTCCCCATTTTCTTTTCTATATT
Found at i:68308913 original size:46 final size:46
Alignment explanation
Indices: 68308836--68308966 Score: 140
Period size: 46 Copynumber: 2.9 Consensus size: 46
68308826 TTATTTACAA
* *
68308836 ATTTGTTGTGTATCCATAACCAAAGGAAGATTCCATATGTG-GGTT
1 ATTTGTTGTGTATCCACAACCAAAGGAAGATTCCATATGTGAGATT
* * * * * *
68308881 ATTTGCTGTGTAATCTACAACCAAAGGTAGATTTCATCTGCGAGATT
1 ATTTGTTGTGT-ATCCACAACCAAAGGAAGATTCCATATGTGAGATT
* * *
68308928 -TTTGTTGTGTACCCACAACCAGAGGCAGATTCCATATGT
1 ATTTGTTGTGTATCCACAACCAAAGGAAGATTCCATATGT
68308967 AGGACTTTTT
Statistics
Matches: 68, Mismatches: 16, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
45 32 0.47
46 33 0.49
47 3 0.04
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.34
Consensus pattern (46 bp):
ATTTGTTGTGTATCCACAACCAAAGGAAGATTCCATATGTGAGATT
Found at i:68314755 original size:27 final size:27
Alignment explanation
Indices: 68314737--68314815 Score: 97
Period size: 27 Copynumber: 2.9 Consensus size: 27
68314727 CATTCTACCA
* * *
68314737 TACAGGGGTATTACGGTCATTTTACAT
1 TACAAGGGTATTACAGTCATTTTACAC
*
68314764 TACAAGGGCATTACAGTCATTTTACAC
1 TACAAGGGTATTACAGTCATTTTACAC
*
68314791 TACAAGGGTATTTA-AGTAATTTTAC
1 TACAAGGGTA-TTACAGTCATTTTAC
68314816 CAATATTGGG
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
27 42 0.93
28 3 0.07
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.35
Consensus pattern (27 bp):
TACAAGGGTATTACAGTCATTTTACAC
Found at i:68317414 original size:20 final size:20
Alignment explanation
Indices: 68317389--68317434 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
68317379 TGGGTAGGGG
*
68317389 ACACGGGTGTGTCCCAAAGC
1 ACACGGGCGTGTCCCAAAGC
68317409 ACACGGGCGTGTCCCAAAGC
1 ACACGGGCGTGTCCCAAAGC
68317429 ACACGG
1 ACACGG
68317435 TCTTGTGCGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.26, C:0.33, G:0.30, T:0.11
Consensus pattern (20 bp):
ACACGGGCGTGTCCCAAAGC
Found at i:68334642 original size:20 final size:20
Alignment explanation
Indices: 68334617--68334654 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
68334607 GCTTTAAATA
68334617 GAGGAGAGTAAATGTACCAT
1 GAGGAGAGTAAATGTACCAT
68334637 GAGGAGAGTAAATGTACC
1 GAGGAGAGTAAATGTACC
68334655 TTTCTTGGCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.39, C:0.11, G:0.32, T:0.18
Consensus pattern (20 bp):
GAGGAGAGTAAATGTACCAT
Found at i:68335087 original size:27 final size:27
Alignment explanation
Indices: 68335057--68335160 Score: 118
Period size: 27 Copynumber: 3.9 Consensus size: 27
68335047 ATTACCAAAG
* * *
68335057 TACCCCCGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
68335084 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
** *
68335111 TACCCTTAATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
68335138 TGCCCTCGATTTACAAAATTACT
1 TACCCTCGATTTACAGAATTACT
68335161 AAAATACCCT
Statistics
Matches: 64, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 64 1.00
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:68335185 original size:54 final size:54
Alignment explanation
Indices: 68335065--68335187 Score: 138
Period size: 54 Copynumber: 2.3 Consensus size: 54
68335055 AGTACCCCCG
* * * ***
68335065 ATTTACATAATTACCGTTTTACCCTCGATTTATAGAATTACTATTTTACCCTTA
1 ATTTACAAAATTACCGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTA
* * * * *
68335119 ATTTATAGAATTACTGTTTTGCCCTCGATTTACAAAATTACTAAAATACCCTTG
1 ATTTACAAAATTACCGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTA
*
68335173 GTTTACAAAATTACC
1 ATTTACAAAATTACC
68335188 AAAATACCCT
Statistics
Matches: 55, Mismatches: 14, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.33, C:0.20, G:0.07, T:0.41
Consensus pattern (54 bp):
ATTTACAAAATTACCGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTA
Found at i:68335284 original size:54 final size:52
Alignment explanation
Indices: 68335152--68335330 Score: 214
Period size: 54 Copynumber: 3.3 Consensus size: 52
68335142 CTCGATTTAC
* ** * *
68335152 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTGGTCTGT
1 AAAATTACCAAAATACCC-TGGTTTGTAAAATTACCAAAATACCCTAGTTTGT
* *
68335205 AAAATTGCTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATA-CCCTGGTTTGTAAAATTACCAAAATA-CCCTAGTTTGT
* * * *
68335259 AAAATTACCAAAATACCACTAGTTTGTGAAATTACCGAAATACCCTCAATTTGT
1 AAAATTACCAAAATACC-CTGGTTTGTAAAATTACCAAAATACCCT-AGTTTGT
68335313 AAAATTACCAAAATACCC
1 AAAATTACCAAAATACCC
68335331 CTGATTTACG
Statistics
Matches: 111, Mismatches: 11, Indels: 8
0.85 0.08 0.06
Matches are distributed among these distances:
53 42 0.38
54 69 0.62
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (52 bp):
AAAATTACCAAAATACCCTGGTTTGTAAAATTACCAAAATACCCTAGTTTGT
Found at i:68335320 original size:81 final size:80
Alignment explanation
Indices: 68335152--68335346 Score: 223
Period size: 81 Copynumber: 2.4 Consensus size: 80
68335142 CTCGATTTAC
* * * * * *
68335152 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTGGTCTGTAAAATTGCTAAA
1 AAAATTACCAAAATACCCCTAGTTTACAAAATTACCAAAATACCCTAGTCTGTAAAATTACCAAA
**
68335217 ATACCCCTGGTTTGT
66 ATACCCCTAATTTGT
** * * *
68335232 AAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCACTAGTTTGTGAAATTACCGA
1 AAAATTACCAAAATACCCCTAGTTTACAAAATTACCAAAATACC-CTAGTCTGTAAAATTACCAA
68335297 AATA-CCCTCAATTTGT
65 AATACCCCT-AATTTGT
*
68335313 AAAATTACCAAAATACCCCT-GATTTACGAAATTA
1 AAAATTACCAAAATACCCCTAG-TTTACAAAATTA
68335347 TAGAAATGCC
Statistics
Matches: 96, Mismatches: 16, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
80 44 0.46
81 52 0.54
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.30
Consensus pattern (80 bp):
AAAATTACCAAAATACCCCTAGTTTACAAAATTACCAAAATACCCTAGTCTGTAAAATTACCAAA
ATACCCCTAATTTGT
Found at i:68335337 original size:27 final size:27
Alignment explanation
Indices: 68335152--68335337 Score: 191
Period size: 27 Copynumber: 6.9 Consensus size: 27
68335142 CTCGATTTAC
* * * **
68335152 AAAATTACTAAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCCTGATTTGT
* *
68335179 AAAATTACCAAAATA-CCCTGGTCTGT
1 AAAATTACCAAAATACCCCTGATTTGT
* * *
68335205 AAAATTGCTAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
68335232 AAAATTACCAAAATACCCCT-AGTTTGT
1 AAAATTACCAAAATACCCCTGA-TTTGT
*
68335259 AAAATTACCAAAATACCACT-AGTTTGT
1 AAAATTACCAAAATACCCCTGA-TTTGT
* * *
68335286 GAAATTACCGAAATA-CCCTCAATTTGT
1 AAAATTACCAAAATACCCCT-GATTTGT
68335313 AAAATTACCAAAATACCCCTGATTT
1 AAAATTACCAAAATACCCCTGATTT
68335338 ACGAAATTAT
Statistics
Matches: 136, Mismatches: 18, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
26 23 0.17
27 108 0.79
28 5 0.04
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGATTTGT
Found at i:68336724 original size:25 final size:25
Alignment explanation
Indices: 68336695--68336742 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
68336685 TTATAACATG
* *
68336695 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCGTTATACCCCTAGGTA
*
68336720 AAAATGACTGTTATACCCCTAGG
1 AAAATGACCGTTATACCCCTAGG
68336743 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (25 bp):
AAAATGACCGTTATACCCCTAGGTA
Found at i:68336793 original size:9 final size:9
Alignment explanation
Indices: 68336781--68336837 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
68336771 TTTGATAAAC
68336781 ATGATATGT
1 ATGATATGT
*
68336790 ATGATATGCAC
1 ATGATATG--T
*
68336801 ATGACATGT
1 ATGATATGT
*
68336810 ATGATATGCAC
1 ATGATATG--T
68336821 ATGATATGT
1 ATGATATGT
68336830 ATGATATG
1 ATGATATG
68336838 CACATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:68336804 original size:20 final size:20
Alignment explanation
Indices: 68336779--68336849 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
68336769 ATTTTGATAA
68336779 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
68336799 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
68336819 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
68336839 ACATGAGATGT
1 ACATGATATGT
68336850 TCATAAATGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:68336826 original size:11 final size:11
Alignment explanation
Indices: 68336790--68336844 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
68336780 CATGATATGT
68336790 ATGATATGCAC
1 ATGATATGCAC
* *
68336801 ATGACATG--T
1 ATGATATGCAC
68336810 ATGATATGCAC
1 ATGATATGCAC
*
68336821 ATGATATG--T
1 ATGATATGCAC
68336830 ATGATATGCAC
1 ATGATATGCAC
68336841 ATGA
1 ATGA
68336845 GATGTTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:68337029 original size:24 final size:24
Alignment explanation
Indices: 68336896--68337064 Score: 193
Period size: 25 Copynumber: 7.0 Consensus size: 24
68336886 AGGAAGTGCA
68336896 AAAGGGCTTATGCCCCAGTTAT-T
1 AAAGGGCTTATGCCCCAGTTATAT
*
68336919 AAAGGACTTATGCCCCAGTTAT-T
1 AAAGGGCTTATGCCCCAGTTATAT
*
68336942 AAAGGGTTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTAT-AT
*
68336967 GAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTAT-AT
* *
68336992 GAAGGGCTTATGCCCCAGTTATAA
1 AAAGGGCTTATGCCCCAGTTATAT
* *
68337016 AAAGGGCTTTTGCCCCAATTACTA-
1 AAAGGGCTTATGCCCCAGTTA-TAT
*
68337040 AAAGAGGC-TAGGCCTCCAGTTATAT
1 AAAG-GGCTTATGCC-CCAGTTATAT
68337065 GATAAAGCAA
Statistics
Matches: 128, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
23 42 0.33
24 29 0.23
25 57 0.45
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAGGGCTTATGCCCCAGTTATAT
Found at i:68337292 original size:31 final size:31
Alignment explanation
Indices: 68337256--68337319 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
68337246 CGTTTACAGT
*
68337256 AAAGGCTTCGGCCTAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
68337287 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
68337318 AA
1 AA
68337320 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.38, C:0.14, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:68342871 original size:13 final size:13
Alignment explanation
Indices: 68342853--68342882 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
68342843 ATGAGAACAA
68342853 AACTGATGAAAGT
1 AACTGATGAAAGT
68342866 AACTGATGAAAGT
1 AACTGATGAAAGT
68342879 AACT
1 AACT
68342883 AGTGTTTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.47, C:0.10, G:0.20, T:0.23
Consensus pattern (13 bp):
AACTGATGAAAGT
Found at i:68352645 original size:89 final size:89
Alignment explanation
Indices: 68352494--68352672 Score: 349
Period size: 89 Copynumber: 2.0 Consensus size: 89
68352484 TAATTTAGGG
68352494 TTACTATGTAGTTTGCTCCTTAAACTTGTTCAAAATTAATTAGTTGGTACATAAACTTTTTTTAA
1 TTACTATGTAGTTTGCTCCTTAAACTTGTTCAAAATTAATTAGTTGGTACATAAACTTTTTTTAA
68352559 ACTAGTTGGTACGCAAAGTTGTAT
66 ACTAGTTGGTACGCAAAGTTGTAT
68352583 TTACTATGTAGTTTGCTCCTTAAACTTGTTCAAAATTAATTAGTTGGTACATAAACTTTTTTTAA
1 TTACTATGTAGTTTGCTCCTTAAACTTGTTCAAAATTAATTAGTTGGTACATAAACTTTTTTTAA
*
68352648 ACTAGTTGGTACGCGAAGTTGTAT
66 ACTAGTTGGTACGCAAAGTTGTAT
68352672 T
1 T
68352673 CTGTCAACAC
Statistics
Matches: 89, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
89 89 1.00
ACGTcount: A:0.30, C:0.12, G:0.15, T:0.43
Consensus pattern (89 bp):
TTACTATGTAGTTTGCTCCTTAAACTTGTTCAAAATTAATTAGTTGGTACATAAACTTTTTTTAA
ACTAGTTGGTACGCAAAGTTGTAT
Found at i:68352928 original size:20 final size:21
Alignment explanation
Indices: 68352898--68352937 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
68352888 TTCATTCAAG
*
68352898 ATGTATTTTTATTATTTTTAT
1 ATGTATTTTTAATATTTTTAT
68352919 ATGT-TTTTTAATATTTTTA
1 ATGTATTTTTAATATTTTTA
68352938 CTTAGATAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.25, C:0.00, G:0.05, T:0.70
Consensus pattern (21 bp):
ATGTATTTTTAATATTTTTAT
Found at i:68353113 original size:25 final size:24
Alignment explanation
Indices: 68353056--68353123 Score: 88
Period size: 25 Copynumber: 2.9 Consensus size: 24
68353046 TTATTTTTGA
68353056 AAAATATAT-AAAATATA-AAAAT
1 AAAATATATAAAAATATATAAAAT
*
68353078 AAAAT-TAATAAAAATATATACAACT
1 AAAATAT-ATAAAAATATATA-AAAT
68353103 AAAATATATAAAAATATATAA
1 AAAATATATAAAAATATATAA
68353124 TATTTTGAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
21 1 0.03
22 7 0.17
23 8 0.20
24 2 0.05
25 21 0.52
26 1 0.03
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (24 bp):
AAAATATATAAAAATATATAAAAT
Found at i:68353161 original size:27 final size:27
Alignment explanation
Indices: 68353085--68353162 Score: 70
Period size: 29 Copynumber: 2.9 Consensus size: 27
68353075 AATAAAATTA
* * *
68353085 ATAAAAAT-ATATACA-ACTAAAATAT
1 ATAAAAATAATATATATACAAAAACAT
* **
68353110 ATAAAAATATATAATATTTTGAAAAACAT
1 ATAAAAATA-AT-ATATATACAAAAACAT
68353139 ATAAAAATAATATATATACAAAAA
1 ATAAAAATAATATATATACAAAAA
68353163 AAATTATAAA
Statistics
Matches: 40, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
25 8 0.20
27 12 0.30
28 5 0.12
29 15 0.38
ACGTcount: A:0.64, C:0.05, G:0.01, T:0.29
Consensus pattern (27 bp):
ATAAAAATAATATATATACAAAAACAT
Found at i:68353163 original size:29 final size:28
Alignment explanation
Indices: 68353068--68353177 Score: 68
Period size: 29 Copynumber: 3.9 Consensus size: 28
68353058 AATATATAAA
*
68353068 ATATA-AAAATAAAAT-TAATAA-AA-AT
1 ATATACAAAA-AAAATATAAAAATAATAT
*
68353093 ATATACAACTAAAATATATAAAAAT-ATAT
1 ATATACAA--AAAAAATATAAAAATAATAT
*** *
68353122 AATATTTTGAAAAACATATAAAAATAATAT
1 -ATA-TACAAAAAAAATATAAAAATAATAT
*
68353152 ATATACAAAAAAAATTATAAATATAA
1 ATATACAAAAAAAA-TATAAAAATAA
68353178 AATTATTAAA
Statistics
Matches: 64, Mismatches: 11, Indels: 16
0.70 0.12 0.18
Matches are distributed among these distances:
25 5 0.08
26 2 0.03
27 4 0.06
28 15 0.23
29 29 0.45
30 7 0.11
31 2 0.03
ACGTcount: A:0.65, C:0.04, G:0.01, T:0.30
Consensus pattern (28 bp):
ATATACAAAAAAAATATAAAAATAATAT
Found at i:68353179 original size:18 final size:17
Alignment explanation
Indices: 68353137--68353179 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 17
68353127 TTTGAAAAAC
* *
68353137 ATATAAAAATAATATAT
1 ATATAAAAAAAATATAA
*
68353154 ATACAAAAAAAATTATAA
1 ATATAAAAAAAA-TATAA
68353172 ATATAAAA
1 ATATAAAA
68353180 TTATTAAAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 10 0.48
18 11 0.52
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (17 bp):
ATATAAAAAAAATATAA
Done.