Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 200 of 295
Found at i:68353295 original size:15 final size:16
Alignment explanation
Indices: 68353275--68353307 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
68353265 TTAATCTATA
68353275 TTTATAT-TTTTAAAT
1 TTTATATATTTTAAAT
*
68353290 TTTATATATTTTTAAT
1 TTTATATATTTTAAAT
68353306 TT
1 TT
68353308 CAAAATAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTTATATATTTTAAAT
Found at i:68369943 original size:30 final size:30
Alignment explanation
Indices: 68369909--68369969 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
68369899 TCCTTAACTC
68369909 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
68369939 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
68369969 A
1 A
68369970 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:68371318 original size:67 final size:67
Alignment explanation
Indices: 68371208--68371344 Score: 238
Period size: 67 Copynumber: 2.0 Consensus size: 67
68371198 TATCTCTACT
*
68371208 GAAAGATACAACATATCATTGGTGAAATACCATAACTTTAGTGGTACCGAGAGAGAATGTTACAT
1 GAAAGATACAACATATCATTGGTGAAATACCATAACTTCAGTGGTACCGAGAGAGAATGTTACAT
68371273 GG
66 GG
* * *
68371275 GAAAGATACAGCATATCATTGGTGGAATACCATAACTTCAGTGGTATCGAGAGAGAATGTTACAT
1 GAAAGATACAACATATCATTGGTGAAATACCATAACTTCAGTGGTACCGAGAGAGAATGTTACAT
68371340 GG
66 GG
68371342 GAA
1 GAA
68371345 TTCTTCCAAG
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
67 66 1.00
ACGTcount: A:0.38, C:0.13, G:0.24, T:0.25
Consensus pattern (67 bp):
GAAAGATACAACATATCATTGGTGAAATACCATAACTTCAGTGGTACCGAGAGAGAATGTTACAT
GG
Found at i:68388110 original size:29 final size:29
Alignment explanation
Indices: 68388077--68388150 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
68388067 GTTGTGAGAT
* *
68388077 TGGCACTAGGTGTGCGAACTTGAAA-TGCA
1 TGGCACTAAGTGTGCG-ACTTGAAAGTACA
* *
68388106 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGACTTGAAAGTACA
68388135 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
68388151 CGGTTGATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 6 0.15
29 34 0.85
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGACTTGAAAGTACA
Found at i:68391520 original size:20 final size:20
Alignment explanation
Indices: 68391497--68391543 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
68391487 AGGGACCAAA
* *
68391497 ATGAAAATTTGTAAAATTTG
1 ATGAAAAATTCTAAAATTTG
*
68391517 ATGAAAAATTCTAAAATTTT
1 ATGAAAAATTCTAAAATTTG
68391537 ATGAAAA
1 ATGAAAA
68391544 CATGAGTTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.51, C:0.02, G:0.11, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTG
Found at i:68394462 original size:37 final size:37
Alignment explanation
Indices: 68394421--68394493 Score: 137
Period size: 37 Copynumber: 2.0 Consensus size: 37
68394411 AAATTCATAC
68394421 CCATAACTACAAAACGCTTCCTAGTTCGGAGGTACTG
1 CCATAACTACAAAACGCTTCCTAGTTCGGAGGTACTG
*
68394458 CCATAACTACAAAATGCTTCCTAGTTCGGAGGTACT
1 CCATAACTACAAAACGCTTCCTAGTTCGGAGGTACT
68394494 AACTTTAGTC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (37 bp):
CCATAACTACAAAACGCTTCCTAGTTCGGAGGTACTG
Found at i:68395206 original size:33 final size:34
Alignment explanation
Indices: 68395148--68395214 Score: 86
Period size: 33 Copynumber: 2.0 Consensus size: 34
68395138 CAAAAATAAG
*
68395148 CAAAAAAGAGAATATTACTTTAAAAACTA-TATGA
1 CAAAAAAGAGAATATTACTTCAAAAA-TATTATGA
68395182 CAAAAAAGA-AAGTATT-CTTCAAAAATATTATGA
1 CAAAAAAGAGAA-TATTACTTCAAAAATATTATGA
68395215 ATTTATGAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
32 2 0.07
33 15 0.50
34 13 0.43
ACGTcount: A:0.55, C:0.09, G:0.09, T:0.27
Consensus pattern (34 bp):
CAAAAAAGAGAATATTACTTCAAAAATATTATGA
Found at i:68397503 original size:13 final size:13
Alignment explanation
Indices: 68397485--68397509 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
68397475 GATAATTCCA
68397485 ACAAAATATTATG
1 ACAAAATATTATG
68397498 ACAAAATATTAT
1 ACAAAATATTAT
68397510 AATCTCTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.08, G:0.04, T:0.32
Consensus pattern (13 bp):
ACAAAATATTATG
Found at i:68400198 original size:16 final size:16
Alignment explanation
Indices: 68400177--68400209 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
68400167 TAAGTAAAGT
68400177 TAGTAGATTTTTTTTA
1 TAGTAGATTTTTTTTA
68400193 TAGTAGATTTTTTTTA
1 TAGTAGATTTTTTTTA
68400209 T
1 T
68400210 GATTTATCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.12, T:0.64
Consensus pattern (16 bp):
TAGTAGATTTTTTTTA
Found at i:68400944 original size:37 final size:37
Alignment explanation
Indices: 68400894--68400969 Score: 152
Period size: 37 Copynumber: 2.1 Consensus size: 37
68400884 TTGGATTAGT
68400894 AGATTTTCATATACGAACTAGAACAAGTATCGAGGTA
1 AGATTTTCATATACGAACTAGAACAAGTATCGAGGTA
68400931 AGATTTTCATATACGAACTAGAACAAGTATCGAGGTA
1 AGATTTTCATATACGAACTAGAACAAGTATCGAGGTA
68400968 AG
1 AG
68400970 TTCGTGTAAC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.41, C:0.13, G:0.20, T:0.26
Consensus pattern (37 bp):
AGATTTTCATATACGAACTAGAACAAGTATCGAGGTA
Found at i:68401482 original size:24 final size:23
Alignment explanation
Indices: 68401406--68401485 Score: 70
Period size: 24 Copynumber: 3.3 Consensus size: 23
68401396 TAGCAATCCG
* **
68401406 GAGCTTCCCGTTAATGGCTCTTCG
1 GAGCTTCTCGTT-ATGGCTCTTAT
* **
68401430 GAGCTACTCGTTATTGGCTCGCAT
1 GAGCTTCTCGTTA-TGGCTCTTAT
*
68401454 AAGCTTCTCGATTATGGCTCTTAT
1 GAGCTTCTCG-TTATGGCTCTTAT
68401478 GAGCTTCT
1 GAGCTTCT
68401486 TGAAATACAG
Statistics
Matches: 43, Mismatches: 11, Indels: 4
0.74 0.19 0.07
Matches are distributed among these distances:
23 1 0.02
24 39 0.91
25 3 0.07
ACGTcount: A:0.16, C:0.25, G:0.23, T:0.36
Consensus pattern (23 bp):
GAGCTTCTCGTTATGGCTCTTAT
Found at i:68402226 original size:25 final size:25
Alignment explanation
Indices: 68402192--68402242 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
68402182 AGGTCGAGAG
68402192 TATATAAACCTATTGATGAATGATT
1 TATATAAACCTATTGATGAATGATT
68402217 TATATAAACCTATTGATGAATGATT
1 TATATAAACCTATTGATGAATGATT
68402242 T
1 T
68402243 TGAATTAGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.39, C:0.08, G:0.12, T:0.41
Consensus pattern (25 bp):
TATATAAACCTATTGATGAATGATT
Found at i:68406705 original size:43 final size:42
Alignment explanation
Indices: 68406647--68406773 Score: 121
Period size: 43 Copynumber: 3.0 Consensus size: 42
68406637 ACAAGCTCAT
*
68406647 ACAATGTC-ATATCCCAAATATGGTCTTACATGTAATCACATA
1 ACAATGCCAATATCCCAAATA-GGTCTTACATGTAATCACATA
* * * * * * *
68406689 TCGATGCCACTATCCCAAATAGCATCTTACACGAAATCATATA
1 ACAATGCCAATATCCCAAATAG-GTCTTACATGTAATCACATA
* * *
68406732 ACAATGCCAATGTCCCAGACAGGATCTTACATGTAATCACAT
1 ACAATGCCAATATCCCAAATAGG-TCTTACATGTAATCACAT
68406774 CTCGGTAATC
Statistics
Matches: 64, Mismatches: 18, Indels: 5
0.74 0.21 0.06
Matches are distributed among these distances:
42 6 0.09
43 58 0.91
ACGTcount: A:0.37, C:0.25, G:0.11, T:0.27
Consensus pattern (42 bp):
ACAATGCCAATATCCCAAATAGGTCTTACATGTAATCACATA
Found at i:68412681 original size:24 final size:25
Alignment explanation
Indices: 68412654--68412721 Score: 66
Period size: 24 Copynumber: 2.8 Consensus size: 25
68412644 TACTTGTTAT
* *
68412654 TGGCTCGCATAAGCTTCTCGAT-TG
1 TGGCTCGCATAAGCTTCCCGATATA
** *
68412678 TGGCTCTTATGAGCTTCCCGATATA
1 TGGCTCGCATAAGCTTCCCGATATA
* *
68412703 TAGCTCGGATAAGCTTCCC
1 TGGCTCGCATAAGCTTCCC
68412722 ATTACATGGC
Statistics
Matches: 34, Mismatches: 9, Indels: 1
0.77 0.20 0.02
Matches are distributed among these distances:
24 18 0.53
25 16 0.47
ACGTcount: A:0.19, C:0.26, G:0.22, T:0.32
Consensus pattern (25 bp):
TGGCTCGCATAAGCTTCCCGATATA
Found at i:68414816 original size:18 final size:19
Alignment explanation
Indices: 68414773--68414816 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 19
68414763 ACAGTACCTA
*
68414773 AACAGTAATCAGTAATGGT
1 AACAGTAATCAGTAACGGT
*
68414792 AAAAGTAA-CAGTAACGGT
1 AACAGTAATCAGTAACGGT
*
68414810 ATCAGTA
1 AACAGTA
68414817 TTCAACACAC
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
18 14 0.67
19 7 0.33
ACGTcount: A:0.45, C:0.11, G:0.20, T:0.23
Consensus pattern (19 bp):
AACAGTAATCAGTAACGGT
Found at i:68414853 original size:45 final size:45
Alignment explanation
Indices: 68414796--68414906 Score: 152
Period size: 45 Copynumber: 2.5 Consensus size: 45
68414786 AATGGTAAAA
* * *
68414796 GTAACAGTAACGGTATCAGTATTCAACACACAAAGTG-CTGAATCT
1 GTAATAGTAACGGTAACAGTATTCAACACACAAAGTGTC-GAATCG
* *
68414841 GTAATAGTAACGGTAACAATATTCGACACACAAAGTGTCGAATCG
1 GTAATAGTAACGGTAACAGTATTCAACACACAAAGTGTCGAATCG
*
68414886 GTAATAGTAACAGTAACAGTA
1 GTAATAGTAACGGTAACAGTA
68414907 GTCGGCACAT
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
45 57 0.98
46 1 0.02
ACGTcount: A:0.41, C:0.17, G:0.19, T:0.23
Consensus pattern (45 bp):
GTAATAGTAACGGTAACAGTATTCAACACACAAAGTGTCGAATCG
Found at i:68415841 original size:3 final size:3
Alignment explanation
Indices: 68415833--68415927 Score: 56
Period size: 3 Copynumber: 32.7 Consensus size: 3
68415823 AATTTGCTTT
* * **
68415833 TAA TAA TAA TAA TAA TCA TAA T-T TAA TAA TAA TTC TAA TAA TAA T-A
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
** * * *
68415879 TAA -AA CCA TAA CAA TTAA TAA TTA TAA TAA TCAA TTA T-A TAA T-A
1 TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA
68415923 TAA TA
1 TAA TA
68415928 TATATAATCT
Statistics
Matches: 69, Mismatches: 16, Indels: 14
0.70 0.16 0.14
Matches are distributed among these distances:
2 9 0.13
3 55 0.80
4 5 0.07
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:68415871 original size:23 final size:23
Alignment explanation
Indices: 68415831--68415922 Score: 71
Period size: 23 Copynumber: 4.0 Consensus size: 23
68415821 TTAATTTGCT
*
68415831 TTTAATAATAATAATAATCATAA
1 TTTAATAATAATAATAATAATAA
**
68415854 TTTAATAATAATTCTAATAATAA
1 TTTAATAATAATAATAATAATAA
* ** *
68415877 TATAA-AACCATAACAATTAATAA
1 TTTAATAATAATAATAA-TAATAA
*
68415900 TTATAATAATCAATTAT-ATAATA
1 TT-TAATAAT-AATAATAATAATA
68415923 TAATATATAT
Statistics
Matches: 51, Mismatches: 14, Indels: 7
0.71 0.19 0.10
Matches are distributed among these distances:
22 6 0.12
23 31 0.61
24 8 0.16
25 3 0.06
26 3 0.06
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (23 bp):
TTTAATAATAATAATAATAATAA
Found at i:68415873 original size:20 final size:20
Alignment explanation
Indices: 68415836--68415927 Score: 52
Period size: 20 Copynumber: 4.7 Consensus size: 20
68415826 TTGCTTTTAA
*
68415836 TAATAATAATAATCATAATT
1 TAATAATAATAATAATAATT
**
68415856 TAATAATAATTCTAATAA--
1 TAATAATAATAATAATAATT
* *
68415874 TAAT-ATAAAACCATAACAA-T
1 TAATAATAATA--ATAATAATT
*
68415894 TAATAATTATAATAATCAA-T
1 TAATAATAATAATAAT-AATT
68415914 TATATAAT-ATAATA
1 TA-ATAATAATAATA
68415928 TATATAATCT
Statistics
Matches: 56, Mismatches: 10, Indels: 12
0.72 0.13 0.15
Matches are distributed among these distances:
17 4 0.07
18 4 0.07
19 9 0.16
20 30 0.54
21 9 0.16
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.37
Consensus pattern (20 bp):
TAATAATAATAATAATAATT
Found at i:68421984 original size:18 final size:19
Alignment explanation
Indices: 68421942--68421985 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 19
68421932 ACAGTACCTA
**
68421942 AACAGTAATCAGTAATGGT
1 AACAGTAATCAGTAACAGT
*
68421961 AGCAGTAAT-AGTAACAGT
1 AACAGTAATCAGTAACAGT
68421979 AACAGTA
1 AACAGTA
68421986 TTCAACATAC
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
18 13 0.62
19 8 0.38
ACGTcount: A:0.45, C:0.11, G:0.20, T:0.23
Consensus pattern (19 bp):
AACAGTAATCAGTAACAGT
Found at i:68422349 original size:40 final size:40
Alignment explanation
Indices: 68422289--68422368 Score: 115
Period size: 40 Copynumber: 2.0 Consensus size: 40
68422279 TTCATCAAAT
* **
68422289 ATTTTACAGTTCAATGCAGTATACGTAACAATATTCAGTA
1 ATTTCACAGTTCAATGCAGTATACAAAACAATATTCAGTA
* *
68422329 ATTTCACAGTTCAATTCAGTATTCAAAACAATATTCAGTA
1 ATTTCACAGTTCAATGCAGTATACAAAACAATATTCAGTA
68422369 TCCTATAATT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.39, C:0.16, G:0.10, T:0.35
Consensus pattern (40 bp):
ATTTCACAGTTCAATGCAGTATACAAAACAATATTCAGTA
Found at i:68422775 original size:19 final size:20
Alignment explanation
Indices: 68422745--68422782 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
68422735 ATCATAATTA
*
68422745 TTATTATAATAATAAATATC
1 TTATTATAATAACAAATATC
68422765 TTATT-TAATAACAAATAT
1 TTATTATAATAACAAATAT
68422783 ATATATTACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (20 bp):
TTATTATAATAACAAATATC
Found at i:68423014 original size:3 final size:3
Alignment explanation
Indices: 68423006--68423030 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
68422996 AATTTGTTTT
68423006 TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA T
68423031 TTAATAGTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:68423051 original size:26 final size:26
Alignment explanation
Indices: 68423004--68423054 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
68422994 TTAATTTGTT
*
68423004 TTTAATAATAATAATAATAATAATAA
1 TTTAATAATAATAATAACAATAATAA
* **
68423030 TTTAATAGTAATTCTAACAATAATA
1 TTTAATAATAATAATAACAATAATA
68423055 TAAAACCGTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.55, C:0.04, G:0.02, T:0.39
Consensus pattern (26 bp):
TTTAATAATAATAATAACAATAATAA
Found at i:68423089 original size:20 final size:20
Alignment explanation
Indices: 68423066--68423103 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
68423056 AAAACCGTAA
68423066 CAATT-AATAATTATAATAAT
1 CAATTGAATAA-TATAATAAT
*
68423086 CAATTGTATAATATAATA
1 CAATTGAATAATATAATA
68423104 TATATAGTCT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.53, C:0.05, G:0.03, T:0.39
Consensus pattern (20 bp):
CAATTGAATAATATAATAAT
Found at i:68424803 original size:23 final size:23
Alignment explanation
Indices: 68424769--68424880 Score: 104
Period size: 23 Copynumber: 4.9 Consensus size: 23
68424759 AAAAAACGAG
*
68424769 TGAATAGGAAATATTCTCTGGCA
1 TGAATAGTAAATATTCTCTGGCA
* *
68424792 TGAATAATAAATATTCCCTGGCA
1 TGAATAGTAAATATTCTCTGGCA
*
68424815 TGAACAGTAGAA-A-TCTCTGGCA
1 TGAATAGTA-AATATTCTCTGGCA
** *
68424837 AAAATAGT-AAGATTCTCTGGCGCA
1 TGAATAGTAAATATTCTCT-G-GCA
*
68424861 TGAATAGTGAATATTCTCTG
1 TGAATAGTAAATATTCTCTG
68424881 TAGTTTATAT
Statistics
Matches: 71, Mismatches: 12, Indels: 11
0.76 0.13 0.12
Matches are distributed among these distances:
20 2 0.03
21 1 0.01
22 18 0.25
23 29 0.41
24 12 0.17
25 9 0.13
ACGTcount: A:0.36, C:0.15, G:0.20, T:0.29
Consensus pattern (23 bp):
TGAATAGTAAATATTCTCTGGCA
Found at i:68425167 original size:58 final size:58
Alignment explanation
Indices: 68425100--68425264 Score: 235
Period size: 58 Copynumber: 2.9 Consensus size: 58
68425090 ATTTCTCCTG
*
68425100 TTCTTGCCAGGGAATATTTACTGTTCACGCCAAAGAATATTTCCTATTCACT-GATCTT
1 TTCTTGCCAGGGAATATTTATTGTTCACGCCAAAGAATATTTCCTATTCACTCG-TCTT
* *
68425158 TTCTTGCCAGGGAATACTTATTGTTCACGCCAAAGAATATTTCCTGTTCACTCGTCTT
1 TTCTTGCCAGGGAATATTTATTGTTCACGCCAAAGAATATTTCCTATTCACTCGTCTT
* * * * *
68425216 TTCTT-ACAGGGAATGTTTATTGTTCTCGCCAGAGAATATTTTCTATTCA
1 TTCTTGCCAGGGAATATTTATTGTTCACGCCAAAGAATATTTCCTATTCA
68425265 TCTCTAAAGA
Statistics
Matches: 96, Mismatches: 10, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
57 37 0.39
58 58 0.60
59 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.15, T:0.39
Consensus pattern (58 bp):
TTCTTGCCAGGGAATATTTATTGTTCACGCCAAAGAATATTTCCTATTCACTCGTCTT
Found at i:68427498 original size:20 final size:21
Alignment explanation
Indices: 68427461--68427500 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
68427451 TAGAGTTGAT
68427461 TTAATGAAAATTCACAATTAG
1 TTAATGAAAATTCACAATTAG
68427482 TTAAT-AAAATT-AGCAATTA
1 TTAATGAAAATTCA-CAATTA
68427501 ATTTTCATCA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 1 0.06
20 12 0.67
21 5 0.28
ACGTcount: A:0.50, C:0.07, G:0.07, T:0.35
Consensus pattern (21 bp):
TTAATGAAAATTCACAATTAG
Found at i:68427913 original size:13 final size:13
Alignment explanation
Indices: 68427895--68427919 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
68427885 ATTAAAAATG
68427895 TTTTAAAATTTAT
1 TTTTAAAATTTAT
68427908 TTTTAAAATTTA
1 TTTTAAAATTTA
68427920 GAATGATTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
TTTTAAAATTTAT
Found at i:68427950 original size:17 final size:16
Alignment explanation
Indices: 68427930--68427977 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
68427920 GAATGATTTA
*
68427930 AAATTTTATTTCAAATT
1 AAATTATATTTCAAA-T
*
68427947 AAATTATATTACAAAT
1 AAATTATATTTCAAAT
*
68427963 ATATTATATTTCAAA
1 AAATTATATTTCAAA
68427978 AACTTAAGTA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
16 14 0.52
17 13 0.48
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.46
Consensus pattern (16 bp):
AAATTATATTTCAAAT
Found at i:68431501 original size:55 final size:54
Alignment explanation
Indices: 68431382--68431528 Score: 208
Period size: 55 Copynumber: 2.7 Consensus size: 54
68431372 ATCCTACGTA
* **
68431382 ACAATCGATTTAAACATATAAACAATCGATTTAAAA-AA-AGTATTGTAACATG
1 ACAATCGATTTAAACATATAAACAATCGATTCAAAAGAAGAGTATTCCAACATG
*
68431434 ACAATCAATTTAAACATATAAACAATCGATTCAAAAGAAGCAGTATTCCAACATG
1 ACAATCGATTTAAACATATAAACAATCGATTCAAAAGAAG-AGTATTCCAACATG
* * *
68431489 ACAATCGATTTAAACATAAAAACAATCTATCCAAAAGAAG
1 ACAATCGATTTAAACATATAAACAATCGATTCAAAAGAAG
68431529 TAATATTTTT
Statistics
Matches: 84, Mismatches: 8, Indels: 3
0.88 0.08 0.03
Matches are distributed among these distances:
52 34 0.40
53 2 0.02
55 48 0.57
ACGTcount: A:0.51, C:0.16, G:0.09, T:0.24
Consensus pattern (54 bp):
ACAATCGATTTAAACATATAAACAATCGATTCAAAAGAAGAGTATTCCAACATG
Found at i:68434280 original size:20 final size:20
Alignment explanation
Indices: 68434255--68434293 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
68434245 CTTCTACGAG
68434255 ATTGCAC-TTCTGTGCCTCTA
1 ATTGCACATT-TGTGCCTCTA
68434275 ATTGCACATTTGTGCCTCT
1 ATTGCACATTTGTGCCTCT
68434294 GTCTGAACTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 16 0.89
21 2 0.11
ACGTcount: A:0.15, C:0.28, G:0.15, T:0.41
Consensus pattern (20 bp):
ATTGCACATTTGTGCCTCTA
Found at i:68441734 original size:25 final size:25
Alignment explanation
Indices: 68441701--68441752 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
68441691 AAATTAGAGT
*
68441701 TAACAAATTGGAAATAAAAATAAAA
1 TAACAAATTGGAAATAAAAACAAAA
*
68441726 TAACAAATTTGAAATAAAAACAAAA
1 TAACAAATTGGAAATAAAAACAAAA
68441751 TA
1 TA
68441753 TTCTTTTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.67, C:0.06, G:0.06, T:0.21
Consensus pattern (25 bp):
TAACAAATTGGAAATAAAAACAAAA
Found at i:68443683 original size:20 final size:20
Alignment explanation
Indices: 68443658--68443737 Score: 108
Period size: 20 Copynumber: 4.0 Consensus size: 20
68443648 TTGTATGAGA
*
68443658 TTGCACTTCGGTGCCTCTGT
1 TTGCACTTCGGTGCCTTTGT
*
68443678 TTGCACTTTGGTGCCTTTGT
1 TTGCACTTCGGTGCCTTTGT
*
68443698 TTGCACTTCGGTGCCTTTGA
1 TTGCACTTCGGTGCCTTTGT
*
68443718 TTGCACATT-TGTGCCTTTGT
1 TTGCAC-TTCGGTGCCTTTGT
68443738 CAGTACTTTG
Statistics
Matches: 53, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
20 51 0.96
21 2 0.04
ACGTcount: A:0.07, C:0.24, G:0.24, T:0.45
Consensus pattern (20 bp):
TTGCACTTCGGTGCCTTTGT
Found at i:68443713 original size:40 final size:40
Alignment explanation
Indices: 68443658--68443737 Score: 126
Period size: 40 Copynumber: 2.0 Consensus size: 40
68443648 TTGTATGAGA
*
68443658 TTGCACTTCGGTGCCTCTGTTTGCAC-TTTGGTGCCTTTGT
1 TTGCACTTCGGTGCCTCTGATTGCACATTT-GTGCCTTTGT
*
68443698 TTGCACTTCGGTGCCTTTGATTGCACATTTGTGCCTTTGT
1 TTGCACTTCGGTGCCTCTGATTGCACATTTGTGCCTTTGT
68443738 CAGTACTTTG
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
40 34 0.92
41 3 0.08
ACGTcount: A:0.07, C:0.24, G:0.24, T:0.45
Consensus pattern (40 bp):
TTGCACTTCGGTGCCTCTGATTGCACATTTGTGCCTTTGT
Found at i:68449256 original size:43 final size:43
Alignment explanation
Indices: 68449167--68449257 Score: 146
Period size: 43 Copynumber: 2.1 Consensus size: 43
68449157 TTTTACTTGA
*
68449167 AATCAAATAAAGATGCCAATGTCCCAGACATGGTCTTACACGT
1 AATCAAATAAAGATGCCAATGTCCCAGACATGGTCTTACACAT
* * *
68449210 AATCATATAATGATGCCAATGTTCCAGACATGGTCTTACACAT
1 AATCAAATAAAGATGCCAATGTCCCAGACATGGTCTTACACAT
68449253 AATCA
1 AATCA
68449258 CATCTCGTTA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.37, C:0.22, G:0.14, T:0.26
Consensus pattern (43 bp):
AATCAAATAAAGATGCCAATGTCCCAGACATGGTCTTACACAT
Found at i:68452150 original size:48 final size:48
Alignment explanation
Indices: 68451989--68452370 Score: 333
Period size: 48 Copynumber: 7.9 Consensus size: 48
68451979 ATATGAGGGT
* * * *
68451989 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGA
1 TATGAGAGCTAGTGTAAGACCATGTTTAGAACATGGCATCGACATTGA
* * * *
68452037 TATGAGAGCTAGTGTAAGACCATGTCT-GGACATGGCATCGGTC-TCGA
1 TATGAGAGCTAGTGTAAGACCATGTTTAGAACATGGCATC-GACATTGA
* * * *
68452084 TATGTGAGCCAGTGTAAGACCATGTTTAGAATATGGAATCGACATTGA
1 TATGAGAGCTAGTGTAAGACCATGTTTAGAACATGGCATCGACATTGA
* * * *
68452132 TATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATC-AGCCTCGA
1 TATGAGAGCTAGTGTAAGACCATGTTTAGAACATGGCATCGA-CATTGA
* * * *
68452180 TATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATC-AGTATTTA
1 TATGAGAGCTAGTGTAAGACCATGTTTAGAACATGGCATCGA-CATTGA
* * * * *
68452228 TATGAGAGCTAGAGTAAGACCATGTTTGGGACATGACATCGGC-TTCGA
1 TATGAGAGCTAGTGTAAGACCATGTTTAGAACATGGCATCGACATT-GA
* * * * * * * **
68452276 CATGTGGGCTAGTGTAATACCATGTTTGGAACATGGCATTGGCACCGATA
1 TATGAGAGCTAGTGTAAGACCATGTTTAGAACATGGCATCGACATTG--A
* * * *
68452326 TATGAAAGCCAGTGTAAGACCATGTTTGGCACATGGCATCGACAT
1 TATGAGAGCTAGTGTAAGACCATGTTTAGAACATGGCATCGACAT
68452371 CTTACCCTTT
Statistics
Matches: 268, Mismatches: 57, Indels: 16
0.79 0.17 0.05
Matches are distributed among these distances:
47 43 0.16
48 189 0.71
50 36 0.13
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (48 bp):
TATGAGAGCTAGTGTAAGACCATGTTTAGAACATGGCATCGACATTGA
Found at i:68452205 original size:96 final size:95
Alignment explanation
Indices: 68451989--68452366 Score: 479
Period size: 96 Copynumber: 3.9 Consensus size: 95
68451979 ATATGAGGGT
*
68451989 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGATATGAGAGCTAGTGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGATATGAGAGCTAGTGTAA
*
68452054 GACCATGTCTGGACATGGCATCGGTCTCGA
66 GACCATGTCTGGACATGGCATCGGCCTCGA
* * *
68452084 TATGTGAGCCAGTGTAAGACCATGTTTAGAATATGGAATCGACATTGATATGAGAGCTAGTGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGATATGAGAGCTAGTGTAA
*
68452149 GACCATGTCTAGGACATGGCATCAGCCTCGA
66 GACCATGTCT-GGACATGGCATCGGCCTCGA
* * * *
68452180 TATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATC-AGTATTTATATGAGAGCTAGAGTA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGA-CATTGATATGAGAGCTAGTGTA
* * *
68452244 AGACCATGTTTGGGACATGACATCGGCTTCGA
65 AGACCATGTCT-GGACATGGCATCGGCCTCGA
* * * * * * ** * *
68452276 CATGTGGGCTAGTGTAATACCATGTTTGGAACATGGCATTGGCACCGATATATGAAAGCCAGTGT
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTG--ATATGAGAGCTAGTGT
*
68452341 AAGACCATGTTTGGCACATGGCATCG
64 AAGACCATGTCTGG-ACATGGCATCG
68452367 ACATCTTACC
Statistics
Matches: 246, Mismatches: 31, Indels: 9
0.86 0.11 0.03
Matches are distributed among these distances:
95 72 0.29
96 137 0.56
97 2 0.01
98 35 0.14
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.27
Consensus pattern (95 bp):
TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGATATGAGAGCTAGTGTAA
GACCATGTCTGGACATGGCATCGGCCTCGA
Found at i:68452299 original size:144 final size:143
Alignment explanation
Indices: 68451990--68452365 Score: 427
Period size: 144 Copynumber: 2.6 Consensus size: 143
68451980 TATGAGGGTT
* * * *
68451990 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGATATGAGAGCTAGTGTAAG
1 ATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCCTCGATATGTGAGCTAGTGTAAG
* * * * * *
68452055 ACCATGTCTGGACATGGCATCGGTCTCGATATGTGAGCCAGTGTAAGACCATGTTTAGAATATGG
66 ACCATGTTTGGACATGGCATCAGTATCGATATGAGAGCCAGAGTAAGACCATGTTTAGAACATGG
*
68452120 AATCGACATTGAT
131 AATCGACATTGAC
* * *
68452133 ATGAGAGCTAGTGTAAGACCATGTCTAGG-ACATGGCATCAGCCTCGATATGTGAGCTAGTGTAA
1 ATGTGAGCTAGTGTAAGACCATGT-TTGGAACATGGCATCGGCCTCGATATGTGAGCTAGTGTAA
** * * *
68452197 GACCATGTTTGGAACATGGCATCAGTATTTATATGAGAGCTAGAGTAAGACCATGTTTGGGACAT
65 GACCATGTTTGG-ACATGGCATCAGTATCGATATGAGAGCCAGAGTAAGACCATGTTTAGAACAT
*
68452262 -GACATCGGC-TTCGAC
129 GGA-ATCGACATT-GAC
* * * * *
68452277 ATGTGGGCTAGTGTAATACCATGTTTGGAACATGGCATTGGCAC-CGATATATGAAAGCCAGTGT
1 ATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGC-CTCGATATGTG--AGCTAGTGT
68452341 AAGACCATGTTTGGCACATGGCATC
63 AAGACCATGTTTGG-ACATGGCATC
68452366 GACATCTTAC
Statistics
Matches: 196, Mismatches: 29, Indels: 13
0.82 0.12 0.05
Matches are distributed among these distances:
143 71 0.36
144 92 0.47
145 1 0.01
146 32 0.16
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (143 bp):
ATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCCTCGATATGTGAGCTAGTGTAAG
ACCATGTTTGGACATGGCATCAGTATCGATATGAGAGCCAGAGTAAGACCATGTTTAGAACATGG
AATCGACATTGAC
Found at i:68469840 original size:26 final size:26
Alignment explanation
Indices: 68469804--68469855 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
68469794 TTGCTATGTA
68469804 AAATGATTTTAGGATATGAGTCCACG
1 AAATGATTTTAGGATATGAGTCCACG
68469830 AAATGATTTTAGGATATGAGTCCACG
1 AAATGATTTTAGGATATGAGTCCACG
68469856 CTAGTGATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.35, C:0.12, G:0.23, T:0.31
Consensus pattern (26 bp):
AAATGATTTTAGGATATGAGTCCACG
Found at i:68470098 original size:22 final size:22
Alignment explanation
Indices: 68470073--68470117 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
68470063 AAAAGGGCAC
68470073 TCCAGTTGGGTTAAGAAAATGT
1 TCCAGTTGGGTTAAGAAAATGT
68470095 TCCAGTTGGGTTAAGAAAATGT
1 TCCAGTTGGGTTAAGAAAATGT
68470117 T
1 T
68470118 ATCTTCTTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.31, C:0.09, G:0.27, T:0.33
Consensus pattern (22 bp):
TCCAGTTGGGTTAAGAAAATGT
Found at i:68474746 original size:13 final size:13
Alignment explanation
Indices: 68474728--68474752 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
68474718 ATATCAATAT
68474728 TTAATAATTTAAA
1 TTAATAATTTAAA
68474741 TTAATAATTTAA
1 TTAATAATTTAA
68474753 TCAAATTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
TTAATAATTTAAA
Found at i:68477672 original size:10 final size:10
Alignment explanation
Indices: 68477657--68477706 Score: 59
Period size: 10 Copynumber: 5.0 Consensus size: 10
68477647 TAATTTTAGG
68477657 ATTTAT-TTT
1 ATTTATCTTT
68477666 CATTTATCTTT
1 -ATTTATCTTT
*
68477677 AATTATCTTT
1 ATTTATCTTT
68477687 ATTTAT-TTGT
1 ATTTATCTT-T
68477697 ATTTATCTTT
1 ATTTATCTTT
68477707 GAGAATTTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
9 2 0.06
10 28 0.80
11 5 0.14
ACGTcount: A:0.22, C:0.08, G:0.02, T:0.68
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:68478458 original size:17 final size:18
Alignment explanation
Indices: 68478427--68478460 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
68478417 TATTCTCCCT
*
68478427 TTTAATTTTCGCAATTTA
1 TTTAATTTTCACAATTTA
68478445 TTTAA-TTTCACAATTT
1 TTTAATTTTCACAATTT
68478461 CAATTTGACT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.29, C:0.12, G:0.03, T:0.56
Consensus pattern (18 bp):
TTTAATTTTCACAATTTA
Found at i:68496171 original size:18 final size:17
Alignment explanation
Indices: 68496150--68496186 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
68496140 CTTAATATAT
68496150 ATTTCTAAAAAAATAAAC
1 ATTTCT-AAAAAATAAAC
*
68496168 ATTTCTTAAAAATAAAC
1 ATTTCTAAAAAATAAAC
68496185 AT
1 AT
68496187 ATCATATGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 12 0.67
18 6 0.33
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.32
Consensus pattern (17 bp):
ATTTCTAAAAAATAAAC
Found at i:68499863 original size:16 final size:17
Alignment explanation
Indices: 68499844--68499875 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
68499834 GAAAATTGGG
68499844 AGAGAAGAAGA-AGAAC
1 AGAGAAGAAGAGAGAAC
68499860 AGAGAAGAAGAGAGAA
1 AGAGAAGAAGAGAGAA
68499876 TTTTGAATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.62, C:0.03, G:0.34, T:0.00
Consensus pattern (17 bp):
AGAGAAGAAGAGAGAAC
Found at i:68499890 original size:21 final size:21
Alignment explanation
Indices: 68499864--68499906 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
68499854 AAGAACAGAG
*
68499864 AAGAAGAGAGAATTTTGAATT
1 AAGAAGAGAGAATTCTGAATT
68499885 AAGAAGAGAGAATTCTGAATT
1 AAGAAGAGAGAATTCTGAATT
68499906 A
1 A
68499907 TTTGTGTACT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.49, C:0.02, G:0.23, T:0.26
Consensus pattern (21 bp):
AAGAAGAGAGAATTCTGAATT
Found at i:68501905 original size:21 final size:21
Alignment explanation
Indices: 68501880--68501920 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
68501870 GAACAGAGAG
*
68501880 GAAGAGAGAATTCTAAATTAA
1 GAAGAGAAAATTCTAAATTAA
*
68501901 GAAGAGAAAATTCTGAATTA
1 GAAGAGAAAATTCTAAATTA
68501921 TCTGTGTACT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.51, C:0.05, G:0.20, T:0.24
Consensus pattern (21 bp):
GAAGAGAAAATTCTAAATTAA
Found at i:68505120 original size:20 final size:19
Alignment explanation
Indices: 68505095--68505152 Score: 64
Period size: 20 Copynumber: 2.9 Consensus size: 19
68505085 AAAGGCATCG
68505095 AAGTGCAGACAGAGGCACA
1 AAGTGCAGACAGAGGCACA
*
68505114 AATGTGC-GATCAGAGGCATCG
1 AA-GTGCAGA-CAGAGGCA-CA
*
68505135 AAGTGCAAACAGAGGCAC
1 AAGTGCAGACAGAGGCAC
68505153 CAGAGTGCAA
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
19 5 0.15
20 24 0.73
21 4 0.12
ACGTcount: A:0.38, C:0.21, G:0.31, T:0.10
Consensus pattern (19 bp):
AAGTGCAGACAGAGGCACA
Found at i:68505159 original size:20 final size:19
Alignment explanation
Indices: 68505096--68505163 Score: 57
Period size: 20 Copynumber: 3.4 Consensus size: 19
68505086 AAGGCATCGA
* *
68505096 AGTGCAGACAGAGGCACAA
1 AGTGCAAACAGAGGCACAG
* *
68505115 ATGTGCGATCAGAGGCATC-G
1 A-GTGCAAACAGAGGCA-CAG
68505135 AAGTGCAAACAGAGGCACCAG
1 -AGTGCAAACAGAGGCA-CAG
68505156 AGTGCAAA
1 AGTGCAAA
68505164 TCCCATACAA
Statistics
Matches: 38, Mismatches: 7, Indels: 7
0.73 0.13 0.13
Matches are distributed among these distances:
19 1 0.03
20 34 0.89
21 3 0.08
ACGTcount: A:0.38, C:0.21, G:0.31, T:0.10
Consensus pattern (19 bp):
AGTGCAAACAGAGGCACAG
Found at i:68508730 original size:29 final size:28
Alignment explanation
Indices: 68508698--68508752 Score: 92
Period size: 29 Copynumber: 1.9 Consensus size: 28
68508688 GTGAGATATA
*
68508698 CTGATTTGGCTTCGGGCCGTGCATATCGG
1 CTGATTTGGCTTCGGGCCATG-ATATCGG
68508727 CTGATTTGGCTTCGGGCCATGATATC
1 CTGATTTGGCTTCGGGCCATGATATC
68508753 AGTATTTTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 5 0.20
29 20 0.80
ACGTcount: A:0.13, C:0.24, G:0.31, T:0.33
Consensus pattern (28 bp):
CTGATTTGGCTTCGGGCCATGATATCGG
Found at i:68525755 original size:29 final size:27
Alignment explanation
Indices: 68525705--68525764 Score: 84
Period size: 29 Copynumber: 2.1 Consensus size: 27
68525695 TTCGCATCCT
* *
68525705 TCTCTCAACTTTCTCAATTCTCTCAAAC
1 TCTCTCAACCTTCTCAAGTCTCTC-AAC
68525733 TCTCTCAAACCTTCTCAAGTCTCTCAAC
1 TCTCTC-AACCTTCTCAAGTCTCTCAAC
68525761 TCTC
1 TCTC
68525765 GTTTTAAATT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
28 13 0.45
29 16 0.55
ACGTcount: A:0.23, C:0.38, G:0.02, T:0.37
Consensus pattern (27 bp):
TCTCTCAACCTTCTCAAGTCTCTCAAC
Found at i:68525764 original size:9 final size:9
Alignment explanation
Indices: 68525705--68525764 Score: 59
Period size: 9 Copynumber: 6.4 Consensus size: 9
68525695 TTCGCATCCT
68525705 TCTCTCAAC
1 TCTCTCAAC
* *
68525714 TTTCTCAAT
1 TCTCTCAAC
68525723 TCTCTCAAAC
1 TCTCTC-AAC
68525733 TCTCTCAAAC
1 TCTCTC-AAC
*
68525743 -CTTCTCAAG
1 TC-TCTCAAC
68525752 TCTCTCAAC
1 TCTCTCAAC
68525761 TCTC
1 TCTC
68525765 GTTTTAAATT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
9 25 0.60
10 17 0.40
ACGTcount: A:0.23, C:0.38, G:0.02, T:0.37
Consensus pattern (9 bp):
TCTCTCAAC
Found at i:68534722 original size:29 final size:31
Alignment explanation
Indices: 68534674--68534737 Score: 80
Period size: 31 Copynumber: 2.1 Consensus size: 31
68534664 TTTATAGTTA
*
68534674 TTTAATTAGATAATTATTATTTATTTAAT-AT
1 TTTAATAAGATAATTATTA-TTATTTAATCAT
*
68534705 TTTAATAAGAT-ATT-TTATTATTTTATCAT
1 TTTAATAAGATAATTATTATTATTTAATCAT
68534734 TTTA
1 TTTA
68534738 TTTAGTCTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
28 8 0.27
29 9 0.30
30 3 0.10
31 10 0.33
ACGTcount: A:0.36, C:0.02, G:0.03, T:0.59
Consensus pattern (31 bp):
TTTAATAAGATAATTATTATTATTTAATCAT
Found at i:68553739 original size:40 final size:40
Alignment explanation
Indices: 68553656--68553918 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
68553646 TTGAATGCTG
* * * * * *
68553656 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
68553696 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
68553736 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
68553776 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
68553816 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
68553856 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
68553895 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
68553919 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.18
40 156 0.78
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:68553938 original size:79 final size:80
Alignment explanation
Indices: 68553695--68553953 Score: 238
Period size: 80 Copynumber: 3.3 Consensus size: 80
68553685 AAGTGAATAT
* * * * * * *
68553695 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAG
** * *
68553759 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
68553775 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCAGT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
** ** *
68553840 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * * *
68553855 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
* *
68553919 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
68553934 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
68553954 TACGTGATTT
Statistics
Matches: 154, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
78 14 0.09
79 47 0.31
80 93 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
CGAACGAGGAGCTAA
Found at i:68561096 original size:41 final size:41
Alignment explanation
Indices: 68560994--68561137 Score: 147
Period size: 42 Copynumber: 3.5 Consensus size: 41
68560984 ATCACTAAAA
* *
68560994 GCGGG-TTAAGTCCGAAGGCATTCGTGCGAGTTATTAAGTC
1 GCGGGTTTAAGTCCGAAGGCATTCGCGCGAGTTATTAAATC
*
68561034 -CGAGTGTTTAAGTCCGAAGGCATTCGCGCGAATTATTAAATC
1 GCG-G-GTTTAAGTCCGAAGGCATTCGCGCGAGTTATTAAATC
*
68561076 GCGGGTTTAACGT-CGAAGGCA-TCGTCGCGAGTTGTTAAATC
1 GCGGGTTTAA-GTCCGAAGGCATTCG-CGCGAGTTATTAAATC
* *
68561117 TCCGGG--TATGTCCGAAGGCAT
1 -GCGGGTTTAAGTCCGAAGGCAT
68561138 GGTGTGAGTT
Statistics
Matches: 88, Mismatches: 7, Indels: 17
0.79 0.06 0.15
Matches are distributed among these distances:
39 4 0.05
40 14 0.16
41 29 0.33
42 39 0.44
43 2 0.02
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (41 bp):
GCGGGTTTAAGTCCGAAGGCATTCGCGCGAGTTATTAAATC
Found at i:68580695 original size:1 final size:1
Alignment explanation
Indices: 68580689--68580739 Score: 57
Period size: 1 Copynumber: 51.0 Consensus size: 1
68580679 GAAACAGATA
* * * * *
68580689 TTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTATTATTTATTATTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
68580740 AGCGTAAAAG
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
1 40 1.00
ACGTcount: A:0.08, C:0.02, G:0.00, T:0.90
Consensus pattern (1 bp):
T
Found at i:68586867 original size:39 final size:40
Alignment explanation
Indices: 68586822--68586989 Score: 106
Period size: 40 Copynumber: 4.2 Consensus size: 40
68586812 CGGGGTTTAG
* * *
68586822 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
68586861 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
68586901 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
68586941 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
68586982 CCGGATAT
1 CCGGATAT
68586990 CATTCGAGTA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 18 0.17
40 61 0.56
41 27 0.25
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:68586972 original size:41 final size:40
Alignment explanation
Indices: 68586845--68586989 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
68586835 CTCGCACAAG
* * * * *
68586845 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
68586885 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
68586925 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
68586966 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
68586990 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:68594894 original size:39 final size:40
Alignment explanation
Indices: 68594849--68595016 Score: 106
Period size: 40 Copynumber: 4.2 Consensus size: 40
68594839 CGGGGTTTAG
* * *
68594849 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
68594888 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
68594928 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
68594968 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
68595009 CCGGATAT
1 CCGGATAT
68595017 CATTCGAGTA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 18 0.17
40 61 0.56
41 27 0.25
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:68594999 original size:41 final size:40
Alignment explanation
Indices: 68594872--68595016 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
68594862 CTCGCACAAG
* * * * *
68594872 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
68594912 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
68594952 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
68594993 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
68595017 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:68596247 original size:38 final size:38
Alignment explanation
Indices: 68596205--68596280 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
68596195 CAAGAACTCC
68596205 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
68596243 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
68596281 AAAGGATGAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.32
Consensus pattern (38 bp):
TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
Found at i:68603840 original size:215 final size:215
Alignment explanation
Indices: 68603469--68603879 Score: 813
Period size: 215 Copynumber: 1.9 Consensus size: 215
68603459 AAATATAACA
68603469 CAAGAAATAGATATTTTAATTTATAAGAAAAATTATTTTCTGAATTTTTTTAATTCTAAAAATAA
1 CAAGAAATAGATATTTTAATTTATAAGAAAAATTATTTTCTGAATTTTTTTAATTCTAAAAATAA
68603534 ATTTTACTTTTTTAATTTAAAAACGACTTTTTGAAGAAAAATTATAAATGATATGACAGGTAGCA
66 ATTTTACTTTTTTAATTTAAAAACGACTTTTTGAAGAAAAATTATAAATGATATGACAGGTAGCA
*
68603599 CTTTCTTGTTCCCTAATTTTACCATGTCAACCTTTTGATTAATATGTTAGTCGATGGGACAATGT
131 CTTTCTTGCTCCCTAATTTTACCATGTCAACCTTTTGATTAATATGTTAGTCGATGGGACAATGT
68603664 ATTAGAGACAACTAAAGTTT
196 ATTAGAGACAACTAAAGTTT
68603684 CAAGAAATAGATATTTTAATTTATAAGAAAAATTATTTTCTGAATTTTTTTAATTCTAAAAATAA
1 CAAGAAATAGATATTTTAATTTATAAGAAAAATTATTTTCTGAATTTTTTTAATTCTAAAAATAA
68603749 ATTTTACTTTTTTAATTTAAAAACGACTTTTTGAAGAAAAATTATAAATGATATGACAGGTAGCA
66 ATTTTACTTTTTTAATTTAAAAACGACTTTTTGAAGAAAAATTATAAATGATATGACAGGTAGCA
68603814 CTTTCTTGCTCCCTAATTTTACCATGTCAACCTTTTGATTAATATGTTAGTCGATGGGACAATGT
131 CTTTCTTGCTCCCTAATTTTACCATGTCAACCTTTTGATTAATATGTTAGTCGATGGGACAATGT
68603879 A
196 A
68603880 CTAGTGTCAT
Statistics
Matches: 195, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
215 195 1.00
ACGTcount: A:0.37, C:0.10, G:0.11, T:0.41
Consensus pattern (215 bp):
CAAGAAATAGATATTTTAATTTATAAGAAAAATTATTTTCTGAATTTTTTTAATTCTAAAAATAA
ATTTTACTTTTTTAATTTAAAAACGACTTTTTGAAGAAAAATTATAAATGATATGACAGGTAGCA
CTTTCTTGCTCCCTAATTTTACCATGTCAACCTTTTGATTAATATGTTAGTCGATGGGACAATGT
ATTAGAGACAACTAAAGTTT
Found at i:68604158 original size:51 final size:51
Alignment explanation
Indices: 68604094--68604229 Score: 137
Period size: 51 Copynumber: 2.7 Consensus size: 51
68604084 TGGAAACATG
*
68604094 ATCTTAAAAGATATAATATTATAATCTTAGAGATCTTAGATATGATATGGA
1 ATCTTAAAAGATATAATATTATAATCTTAGAGATCTTAGATAAGATATGGA
* * * ** * * ** *
68604145 ATCTTATAAGATATTATTTTATAAGATTACATATCTTATCTAAGATATGTA
1 ATCTTAAAAGATATAATATTATAATCTTAGAGATCTTAGATAAGATATGGA
* * * *
68604196 ACCTTAGAAGATATGATATTATATTCTTAGAGAT
1 ATCTTAAAAGATATAATATTATAATCTTAGAGAT
68604230 TTGATGGTAA
Statistics
Matches: 65, Mismatches: 20, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
51 65 1.00
ACGTcount: A:0.40, C:0.07, G:0.12, T:0.40
Consensus pattern (51 bp):
ATCTTAAAAGATATAATATTATAATCTTAGAGATCTTAGATAAGATATGGA
Found at i:68606080 original size:96 final size:96
Alignment explanation
Indices: 68605914--68606203 Score: 456
Period size: 96 Copynumber: 3.0 Consensus size: 96
68605904 GTGTCCGAGG
* * * * * * *
68605914 AAGTCTGTTATCGATGGGAATGATCGAGCAGATACGGAGCCCAAGAAGCTTGGTTCGAGCAAGGA
1 AAGTCTGTCATCGAAGGGAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
*
68605979 AAAAGCCGAAGCCAAGAGGGTAAAGAGGAGC
66 TAAAGCCGAAGCCAAGAGGGTAAAGAGGAGC
*
68606010 AAGTCTGTCATCGAAGGGTACGATGGAGCAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
1 AAGTCTGTCATCGAAGGGAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
*
68606075 TAAAGCCGAAGCCAAGAGGGCAAAGAGGAGC
66 TAAAGCCGAAGCCAAGAGGGTAAAGAGGAGC
*
68606106 AAGTCTGTCATCGCAGGGAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
1 AAGTCTGTCATCGAAGGGAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
*
68606171 TAAAGCCGAAACCAAGAGGGCT-AAGAGGAGC
66 TAAAGCCGAAGCCAAGAGGG-TAAAGAGGAGC
68606202 AA
1 AA
68606204 AAAGAAGAGA
Statistics
Matches: 179, Mismatches: 14, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
96 179 1.00
ACGTcount: A:0.35, C:0.18, G:0.34, T:0.12
Consensus pattern (96 bp):
AAGTCTGTCATCGAAGGGAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
TAAAGCCGAAGCCAAGAGGGTAAAGAGGAGC
Found at i:68607174 original size:51 final size:51
Alignment explanation
Indices: 68607110--68607245 Score: 155
Period size: 51 Copynumber: 2.7 Consensus size: 51
68607100 TGGAAACATG
*
68607110 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATATGATATGGA
1 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGGA
* * * ** * * ** *
68607161 ATCTTATAAGATATTATTTTATAAGATTACATATCTTATCTAAGATATGTA
1 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGGA
* *
68607212 ATCTTAGAAGATATGATATTATATTCTTAGAGAT
1 ATCTTAAAAGATATGATATTATAATCTTAGAGAT
68607246 TTGATGGTAG
Statistics
Matches: 66, Mismatches: 19, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
51 66 1.00
ACGTcount: A:0.40, C:0.07, G:0.12, T:0.41
Consensus pattern (51 bp):
ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGGA
Found at i:68611480 original size:21 final size:19
Alignment explanation
Indices: 68611432--68611481 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 19
68611422 AAAATAGTAG
* *
68611432 TAACATAATAGTGAAATCA
1 TAACAAAATAGTGAAAACA
68611451 TAACAAAATAGTGAAAAACAA
1 TAACAAAATAGTG-AAAAC-A
*
68611472 TAGCAAAATA
1 TAACAAAATA
68611482 AAAGAGTTCT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
19 12 0.46
20 4 0.15
21 10 0.38
ACGTcount: A:0.60, C:0.10, G:0.10, T:0.20
Consensus pattern (19 bp):
TAACAAAATAGTGAAAACA
Found at i:68615740 original size:40 final size:40
Alignment explanation
Indices: 68615683--68615777 Score: 138
Period size: 40 Copynumber: 2.4 Consensus size: 40
68615673 ACTATGTTTG
*
68615683 GCACTTAGTGTGCGAATTGGAATAGCTTCGGCTATATAAA
1 GCACTTAGTGTGCGAATTGGAATAGCTTCAGCTATATAAA
* *
68615723 GCACTTAGTGTGTGAATTGGAATAGCTTCAGCTATATGTAA
1 GCACTTAGTGTGCGAATTGGAATAGCTTCAGCTATAT-AAA
*
68615764 -CACTAAGTGTGCGA
1 GCACTTAGTGTGCGA
68615778 TACCGCGATA
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
40 47 0.96
41 2 0.04
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (40 bp):
GCACTTAGTGTGCGAATTGGAATAGCTTCAGCTATATAAA
Found at i:68619124 original size:101 final size:101
Alignment explanation
Indices: 68619019--68619200 Score: 256
Period size: 101 Copynumber: 1.8 Consensus size: 101
68619009 GATGGTTAAG
* * * *
68619019 TCACGTGTACAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTCGCATGTGTAGTAG
1 TCACGTGTACAGTACTAAGTGCAGGCTACTACATGTACCAGATGGATAAGTCACATGTGTAGTAC
*
68619084 TAAGTGCAGGCTACTATACGTACCCGTTACCTTCGA
66 TAACTGCAGGCTACTATACGTACCCGTTACCTTCGA
** * * * * *
68619120 TCACGTGTGTAGTACTAAGTGCAGGCTCCTACGTGTATCAGATGGTTAATTCACATGTGTAGTAC
1 TCACGTGTACAGTACTAAGTGCAGGCTACTACATGTACCAGATGGATAAGTCACATGTGTAGTAC
68619185 TAACTGCAGGCTACTA
66 TAACTGCAGGCTACTA
68619201 CGTGTACCAG
Statistics
Matches: 69, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
101 69 1.00
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (101 bp):
TCACGTGTACAGTACTAAGTGCAGGCTACTACATGTACCAGATGGATAAGTCACATGTGTAGTAC
TAACTGCAGGCTACTATACGTACCCGTTACCTTCGA
Found at i:68619250 original size:50 final size:50
Alignment explanation
Indices: 68618867--68619242 Score: 299
Period size: 50 Copynumber: 7.5 Consensus size: 50
68618857 TCCGTTGTGA
* * * *
68618867 GTCACGTGTGTAGTACTAAGTGCAGGCTACAACGAGTACTAGATTGATAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
** * * * * * *
68618917 GTTGCATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCTG-TTAACTTTG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA--TAG
* ** * ** * * * *
68618968 ATCATGTGTGTAGTACTATGTATAGGCTACTACGTGTATCAGATGGTTAA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
* ** *
68619018 GTCACGTGTACAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
* * *** * *
68619068 GTCGCATGTGTAGTAGTAAGTGCAGGCTACTATACGTACCCG-TT-ACCTTCG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA---TAG
* * * * * * *
68619119 ATCACGTGTGTAGTACTAAGTGCAGGCTCCTACGTGTATCAGATGGTTAA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
* *
68619169 TTCACATGTGTAGTACTAACTGCAGGCTACTACGTGTACCAGATTGATAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
*
68619219 GTCGCATGTGTAGTACTAAGTGCA
1 GTCACATGTGTAGTACTAAGTGCA
68619243 AACTACTATG
Statistics
Matches: 245, Mismatches: 73, Indels: 16
0.73 0.22 0.05
Matches are distributed among these distances:
48 1 0.00
49 5 0.02
50 170 0.69
51 67 0.27
52 2 0.01
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (50 bp):
GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
Found at i:68619269 original size:151 final size:151
Alignment explanation
Indices: 68618866--68619260 Score: 565
Period size: 151 Copynumber: 2.6 Consensus size: 151
68618856 ATCCGTTGTG
* * * *
68618866 AGTCACGTGTGTAGTACTAAGTGCAGGCTACAACGAGTACTAGATTGATAGGTTGCATGTGTAGT
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
* * * * * *
68618931 ACTAAGTGTAGGCTACTATGCGTACCTGTTAACTTTGATCATGTGTGTAGTACTATGTATAGGCT
66 ACTAAGTGCAGGCTACTATGCGTACCAGTTAACTTCGATCACGTGTGTAGTACTAAGTACAGGCT
68618996 ACTACGTGTATCAGATGGTTA
131 ACTACGTGTATCAGATGGTTA
** *
68619017 AGTCACGTGTACAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTCGCATGTGTAGT
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
* * * * *
68619082 AGTAAGTGCAGGCTACTATACGTACCCGTTACCTTCGATCACGTGTGTAGTACTAAGTGCAGGCT
66 ACTAAGTGCAGGCTACTATGCGTACCAGTTAACTTCGATCACGTGTGTAGTACTAAGTACAGGCT
*
68619147 CCTACGTGTATCAGATGGTTA
131 ACTACGTGTATCAGATGGTTA
* * *
68619168 ATTCACATGTGTAGTACTAACTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
** *
68619233 ACTAAGTGCAAACTACTATGCATACCAG
66 ACTAAGTGCAGGCTACTATGCGTACCAG
68619261 AGAGCTTCGG
Statistics
Matches: 214, Mismatches: 30, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
151 214 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (151 bp):
AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
ACTAAGTGCAGGCTACTATGCGTACCAGTTAACTTCGATCACGTGTGTAGTACTAAGTACAGGCT
ACTACGTGTATCAGATGGTTA
Found at i:68621909 original size:82 final size:82
Alignment explanation
Indices: 68621768--68621927 Score: 266
Period size: 82 Copynumber: 2.0 Consensus size: 82
68621758 TAAGTCAGCA
* *
68621768 ATTTCTCGATCAGAAACATTAAGAGTTTCTGGAGTTGAAACAAGGTCGGATGATAGTGACAGAAT
1 ATTTCTCGATCAGAAACATAAAGAGTTTCTAGAGTTGAAACAAGGTCGGATGATAGTGACAGAAT
*
68621833 ATTAAAAAGAATTAGAG
66 ATTAAAAAAAATTAGAG
* * *
68621850 ATTTCTCGATCAGAAATATAAAGAGTTTCTAGAGTTGAAATAAGGTCGGATGATGGTGACAGAAT
1 ATTTCTCGATCAGAAACATAAAGAGTTTCTAGAGTTGAAACAAGGTCGGATGATAGTGACAGAAT
68621915 ATTAAAAAAAATT
66 ATTAAAAAAAATT
68621928 TGTACATTTA
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
82 72 1.00
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (82 bp):
ATTTCTCGATCAGAAACATAAAGAGTTTCTAGAGTTGAAACAAGGTCGGATGATAGTGACAGAAT
ATTAAAAAAAATTAGAG
Found at i:68626627 original size:28 final size:29
Alignment explanation
Indices: 68626596--68626655 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 29
68626586 AAAGTGATTT
* *
68626596 TTGACAAAAATGTCAATT-AGGGATTAAA
1 TTGACAAAAATATAAATTGAGGGATTAAA
* * *
68626624 TTGAGAAAAGTATAAATTGAGGGGTTAAA
1 TTGACAAAAATATAAATTGAGGGATTAAA
68626653 TTG
1 TTG
68626656 TGAAATAAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
28 14 0.54
29 12 0.46
ACGTcount: A:0.43, C:0.03, G:0.23, T:0.30
Consensus pattern (29 bp):
TTGACAAAAATATAAATTGAGGGATTAAA
Found at i:68626667 original size:29 final size:28
Alignment explanation
Indices: 68626610--68626668 Score: 66
Period size: 29 Copynumber: 2.1 Consensus size: 28
68626600 CAAAAATGTC
*
68626610 AATTAGGGATTAAATTGAGAAAAGTATA
1 AATTAGGGATTAAATTGAGAAAAGAATA
* *
68626638 AATTGAGGGGTTAAATTGTGAAATA-AATA
1 AATT-AGGGATTAAATTGAGAAA-AGAATA
68626667 AA
1 AA
68626669 AAATATGGGC
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
28 4 0.15
29 21 0.81
30 1 0.04
ACGTcount: A:0.49, C:0.00, G:0.22, T:0.29
Consensus pattern (28 bp):
AATTAGGGATTAAATTGAGAAAAGAATA
Found at i:68631444 original size:42 final size:42
Alignment explanation
Indices: 68631398--68631517 Score: 123
Period size: 43 Copynumber: 2.8 Consensus size: 42
68631388 CGTTGATATG
68631398 AGATTTCGTGTAAGACCACGTCTGGGACATGGCATCAAAATA
1 AGATTTCGTGTAAGACCACGTCTGGGACATGGCATCAAAATA
* * ** * ** *
68631440 AGATTTTCGTATGAGACCATATCTGGGATATGGCATCAATGTG
1 AGA-TTTCGTGTAAGACCACGTCTGGGACATGGCATCAAAATA
** * *
68631483 AGATCCCATGTAAGACCACGTCTAGGACATGGCAT
1 AGATTTCGTGTAAGACCACGTCTGGGACATGGCAT
68631518 TGGCATCTTA
Statistics
Matches: 60, Mismatches: 17, Indels: 2
0.76 0.22 0.03
Matches are distributed among these distances:
42 26 0.43
43 34 0.57
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (42 bp):
AGATTTCGTGTAAGACCACGTCTGGGACATGGCATCAAAATA
Found at i:68631465 original size:43 final size:42
Alignment explanation
Indices: 68631366--68631478 Score: 127
Period size: 43 Copynumber: 2.7 Consensus size: 42
68631356 TGTTATCATG
* ** * * *
68631366 TAAGACCATATCTGGGATATGGCGTTGATATGAGATTTCGTG
1 TAAGACCATATCTGGGATATGGCATCAAAATAAGATTTCGTA
** *
68631408 TAAGACCACGTCTGGGACATGGCATCAAAATAAGATTTTCGTA
1 TAAGACCATATCTGGGATATGGCATCAAAATAAGA-TTTCGTA
*
68631451 TGAGACCATATCTGGGATATGGCATCAA
1 TAAGACCATATCTGGGATATGGCATCAA
68631479 TGTGAGATCC
Statistics
Matches: 57, Mismatches: 13, Indels: 1
0.80 0.18 0.01
Matches are distributed among these distances:
42 27 0.47
43 30 0.53
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (42 bp):
TAAGACCATATCTGGGATATGGCATCAAAATAAGATTTCGTA
Found at i:68634179 original size:106 final size:105
Alignment explanation
Indices: 68633994--68634190 Score: 265
Period size: 106 Copynumber: 1.9 Consensus size: 105
68633984 TATAAACTAG
* * * * *
68633994 ATGCTTTAACATTTCATGCAACTATAATATAGAAAATGATGAATAACAACATAAATTATATAATA
1 ATGCATTAACATTTCATGCAAATATAACATAGAAAATAATGAATAACAACATAAATTACATAATA
*
68634059 TACATTAACCTTTCATGCAAATATAAAAAACATAAATATAC
66 TACATGAA-CTTTCATGCAAATATAAAAAACATAAATATAC
*
68634100 ATGCATTAATATTTCATGCAAAATATAACATAGAAAATAATGAATATAACAACATAAATTACAT-
1 ATGCATTAACATTTCATGC-AAATATAACATAGAAAATAATG-A-ATAACAACATAAATTACATA
68634164 ATATA-ATGATA-TTTCATGCAAATATAA
63 ATATACATGA-ACTTTCATGCAAATATAA
68634191 CTTAAATCAA
Statistics
Matches: 80, Mismatches: 7, Indels: 8
0.84 0.07 0.08
Matches are distributed among these distances:
106 33 0.41
107 22 0.28
108 7 0.09
109 18 0.22
ACGTcount: A:0.51, C:0.12, G:0.06, T:0.31
Consensus pattern (105 bp):
ATGCATTAACATTTCATGCAAATATAACATAGAAAATAATGAATAACAACATAAATTACATAATA
TACATGAACTTTCATGCAAATATAAAAAACATAAATATAC
Found at i:68634679 original size:20 final size:19
Alignment explanation
Indices: 68634649--68634687 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
68634639 ATACATAATT
68634649 AATGAATAATAAATAATAA
1 AATGAATAATAAATAATAA
*
68634668 AATGATATAATATATAATAA
1 AATGA-ATAATAAATAATAA
68634688 TCTTTACATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31
Consensus pattern (19 bp):
AATGAATAATAAATAATAA
Found at i:68634700 original size:18 final size:19
Alignment explanation
Indices: 68634677--68634712 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
68634667 AAATGATATA
68634677 ATATAT-AATAATCTTTAC
1 ATATATAAATAATCTTTAC
*
68634695 ATATATAAATAATGTTTA
1 ATATATAAATAATCTTTA
68634713 TAGTAAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.47, C:0.06, G:0.03, T:0.44
Consensus pattern (19 bp):
ATATATAAATAATCTTTAC
Found at i:68634746 original size:16 final size:16
Alignment explanation
Indices: 68634660--68634753 Score: 57
Period size: 16 Copynumber: 5.6 Consensus size: 16
68634650 ATGAATAATA
*
68634660 AATA-ATAAAATGATAT
1 AATATATAAAAT-ATTT
*
68634676 AATATATAATAATCTTT
1 AATATATAA-AATATTT
68634693 ACATATAT-AAATAATGTT
1 A-ATATATAAAAT-AT-TT
* * **
68634711 TATAGTAAAAAATAAAT
1 AATA-TATAAAATATTT
68634728 AATATATAAAATATTT
1 AATATATAAAATATTT
*
68634744 AATAAATAAA
1 AATATATAAA
68634754 TTATATAAAA
Statistics
Matches: 59, Mismatches: 12, Indels: 14
0.69 0.14 0.16
Matches are distributed among these distances:
16 25 0.42
17 16 0.27
18 14 0.24
19 4 0.07
ACGTcount: A:0.59, C:0.02, G:0.03, T:0.36
Consensus pattern (16 bp):
AATATATAAAATATTT
Found at i:68634750 original size:27 final size:26
Alignment explanation
Indices: 68634720--68634771 Score: 86
Period size: 27 Copynumber: 2.0 Consensus size: 26
68634710 TTATAGTAAA
68634720 AAATAAATAATATATAAAATATTTAAT
1 AAATAAATAATATA-AAAATATTTAAT
*
68634747 AAATAAATTATATAAAAATATTTAA
1 AAATAAATAATATAAAAATATTTAA
68634772 AAGGATTAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 11 0.46
27 13 0.54
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (26 bp):
AAATAAATAATATAAAAATATTTAAT
Found at i:68636984 original size:47 final size:47
Alignment explanation
Indices: 68636911--68637041 Score: 140
Period size: 47 Copynumber: 2.8 Consensus size: 47
68636901 CACATCTTTA
* * *
68636911 CACAATGATGCCATAGCCCAGC-TATGGTCTTACAC-GTAATCACATAT
1 CACACTGATGCCATATCCCA-CATATGGTCTTACACAGT-AGCACATAT
* * * *
68636958 CTCACTGATGTCATATCCCACATATGGTCTTATACAGTAGCATATAT
1 CACACTGATGCCATATCCCACATATGGTCTTACACAGTAGCACATAT
* * *
68637005 CACACCGATGCCATATCCCAGATATGGTCTTATACAG
1 CACACTGATGCCATATCCCACATATGGTCTTACACAG
68637042 AAATCACTTG
Statistics
Matches: 71, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
46 1 0.01
47 68 0.96
48 2 0.03
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.28
Consensus pattern (47 bp):
CACACTGATGCCATATCCCACATATGGTCTTACACAGTAGCACATAT
Found at i:68637057 original size:7 final size:7
Alignment explanation
Indices: 68637045--68637073 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
68637035 TATACAGAAA
68637045 TCACTTG
1 TCACTTG
68637052 TCACTTG
1 TCACTTG
68637059 TCACTTG
1 TCACTTG
68637066 TCACTTG
1 TCACTTG
68637073 T
1 T
68637074 AGCCAAAGCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.14, C:0.28, G:0.14, T:0.45
Consensus pattern (7 bp):
TCACTTG
Found at i:68637107 original size:31 final size:31
Alignment explanation
Indices: 68637072--68637280 Score: 301
Period size: 31 Copynumber: 6.7 Consensus size: 31
68637062 CTTGTCACTT
* *
68637072 GTAGCCAAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* ** *
68637103 GTAGCTGGTGCTACCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
68637134 GTAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
68637165 GTAGCCGGAGCTACCACTTTTCACTGATTAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
68637196 GTAGCAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
68637227 GTAGCTGAAACTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
68637258 GTAGCTGAAGCTACCACTTTTCA
1 GTAGCCGAAGCTACCACTTTTCA
68637281 GTTGTCATTT
Statistics
Matches: 162, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 162 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:68637364 original size:50 final size:50
Alignment explanation
Indices: 68637258--68637434 Score: 257
Period size: 50 Copynumber: 3.5 Consensus size: 50
68637248 CACTGATCAG
* * * *
68637258 GTAGCTGAAGCTACCACTTTTCAGTTGTCATTTG-CCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTT-TCATTTGTCC-TTGATCAGATAAGT
* *
68637309 GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCCTTAATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
* *
68637359 GTAGCCGAAGTTATTACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
68637409 GTAGCCGAAGCTATCACTTATCACTT
1 GTAGCCGAAGCTATCACTTATCACTT
68637435 GTTTCCATGG
Statistics
Matches: 113, Mismatches: 12, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
50 89 0.79
51 24 0.21
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.36
Consensus pattern (50 bp):
GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
Found at i:68639446 original size:20 final size:21
Alignment explanation
Indices: 68639421--68639460 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
68639411 CGATGCCACT
68639421 GAAAATTAG-GCTATTACAGG
1 GAAAATTAGAGCTATTACAGG
*
68639441 GAAAATTTGAGCTATTACAG
1 GAAAATTAGAGCTATTACAG
68639461 CTGCCCCTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.40, C:0.10, G:0.23, T:0.28
Consensus pattern (21 bp):
GAAAATTAGAGCTATTACAGG
Found at i:68639690 original size:44 final size:44
Alignment explanation
Indices: 68639642--68640141 Score: 335
Period size: 44 Copynumber: 11.2 Consensus size: 44
68639632 CAAATCTATC
* * *
68639642 ATCTTCAATCTGCTCCCCGTTGATACAGAGACGCCAAATCTGCT
1 ATCTTCGATCTGCTCCCTGTTAATACAGAGACGCCAAATCTGCT
* *
68639686 ATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAAATCTGCT
1 ATCTTCGATCTGCTCCCTGTTAATACAGAGACGCCAAATCTGCT
* ** * * * * * *
68639730 ATCTTCGATCTACTTCGATGTAAATAAACAAATGTCAAATCTGCT
1 ATCTTCGATCTGC-TCCCTGTTAATACAGAGACGCCAAATCTGCT
* * * *
68639775 ATTTTTGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTT
1 ATCTTCGATCTGCTCCCTGT-TAATACAGAGACGCCAAATCTGCT
* ** * * * *
68639820 ATATTTAATCTGCTCCCTGTCATTACAGAGACACCAAATCGGCT
1 ATCTTCGATCTGCTCCCTGTTAATACAGAGACGCCAAATCTGCT
** * * *** * *
68639864 ATCTTCGATCTGCTTCGATGTAAACACACGA-ATTTCAGATCTTCTT
1 ATCTTCGATCTGC-TCCCTGTTAATACA-GAGACGCCAAATCTGC-T
* * * *
68639910 ATCTTTGATCTGCTCTCTATCTAATACAAAGACGCCAAATCTG-T
1 ATCTTCGATCTGCTCCCTGT-TAATACAGAGACGCCAAATCTGCT
* ** * * *
68639954 CATCTTCGATCTACTCCCTGTCGATATAGAGATGCCAAATCGGCT
1 -ATCTTCGATCTGCTCCCTGTTAATACAGAGACGCCAAATCTGCT
* * * * * * * * * *
68639999 CTCTTTGATTTGCTCTCTGTCAATACAGAAATGCTAGATGTGCT
1 ATCTTCGATCTGCTCCCTGTTAATACAGAGACGCCAAATCTGCT
* * * *
68640043 TTCTTCGATCTGCTCTCC-ATCAATACAGAGATGCCAAATCTGCT
1 ATCTTCGATCTGCTC-CCTGTTAATACAGAGACGCCAAATCTGCT
*
68640087 -TCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTG-T
1 ATCTTCGATCTGCTCCCTGT-TAATACAGAGACGCCAAATCTGCT
*
68640130 CATCTTCAATCT
1 -ATCTTCGATCT
68640142 CCTCTGATGT
Statistics
Matches: 346, Mismatches: 96, Indels: 27
0.74 0.20 0.06
Matches are distributed among these distances:
42 2 0.01
43 16 0.05
44 186 0.54
45 115 0.33
46 27 0.08
ACGTcount: A:0.26, C:0.27, G:0.14, T:0.32
Consensus pattern (44 bp):
ATCTTCGATCTGCTCCCTGTTAATACAGAGACGCCAAATCTGCT
Found at i:68639870 original size:134 final size:136
Alignment explanation
Indices: 68639649--68640220 Score: 585
Period size: 134 Copynumber: 4.3 Consensus size: 136
68639639 ATCATCTTCA
* * * *
68639649 ATCTGCTCCCCGT-TGATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGTC-AATAC
1 ATCTGCTCTCCGTCTAATACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCCCTGTCGAATAC
* * * * *
68639712 AGAGACGCCAAATCTGCTATCTTCGATCTACTTCGATGTAAATAAACAAATGTCAAATCTGC-TA
66 AGAGACGCCAAATCGGCTATCTTCGATCTGCTTCGATGTAAACACACAAATGTCAGATCTGCTTA
*
68639776 TTTTTG
131 TCTTTG
* * ** *
68639782 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATATTTAATCTGCTCCCTGTC-ATTAC
1 ATCTGCTCTCCGTCTAATACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCCCTGTCGAATAC
* * * *
68639846 AGAGACACCAAATCGGCTATCTTCGATCTGCTTCGATGTAAACACACGAATTTCAGATCTTCTTA
66 AGAGACGCCAAATCGGCTATCTTCGATCTGCTTCGATGTAAACACACAAATGTCAGATCTGCTTA
68639911 TCTTTG
131 TCTTTG
** * * * *
68639917 ATCTGCTCTCTATCTAATACAAAGACGCCAAATCTGTCATCTTCGATCTACTCCCTGTCG-ATAT
1 ATCTGCTCTCCGTCTAATACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCCCTGTCGAATAC
* * * * * * * *
68639981 AGAGATGCCAAATCGGCTCTCTTTGATTTGCTCTC--TGTCAATACAGAAATG-CTAGATGTGCT
66 AGAGACGCCAAATCGGCTATCTTCGATCTGCT-TCGATGTAAACACACAAATGTC-AGATCTGCT
*
68640043 T-TCTTCG
129 TATCTTTG
* * * * *
68640050 ATCTGCTCTCCATC-AATACAGAGATGCCAAATCTGCT-TCTTCGATCTGCTCCCCGTCTAATAC
1 ATCTGCTCTCCGTCTAATACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCCCTGTCGAATAC
* * * * * *
68640113 AGAGACGCCAAATCTG-TCATCTTCAATCT-CCTCTGATGTAAACACACGAATGTTAGATCTTCT
66 AGAGACGCCAAATCGGCT-ATCTTCGATCTGCTTC-GATGTAAACACACAAATGTCAGATCTGCT
68640176 TATCTTTG
129 TATCTTTG
* * *
68640184 ATCTTCTCTCTGTCTACTACAGAGACGCCAAATCTGT
1 ATCTGCTCTCCGTCTAATACAGAGACGCCAAATCTGT
68640221 CACCGGCGAT
Statistics
Matches: 355, Mismatches: 71, Indels: 24
0.79 0.16 0.05
Matches are distributed among these distances:
130 2 0.01
131 20 0.06
132 43 0.12
133 52 0.15
134 131 0.37
135 105 0.30
136 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.15, T:0.33
Consensus pattern (136 bp):
ATCTGCTCTCCGTCTAATACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCCCTGTCGAATAC
AGAGACGCCAAATCGGCTATCTTCGATCTGCTTCGATGTAAACACACAAATGTCAGATCTGCTTA
TCTTTG
Found at i:68640126 original size:267 final size:268
Alignment explanation
Indices: 68639664--68640222 Score: 677
Period size: 267 Copynumber: 2.1 Consensus size: 268
68639654 CTCCCCGTTG
* * *
68639664 ATACAGAGACGCCAAATCTG-CTATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAAATCTG
1 ATACAGAGACGCCAAATCTGTC-ATCTTCGATCTACTCCCTGTCAATACAGAGACGCCAAATCGG
*
68639728 CTATCTTCGATCTACTTCGATGTAAATAAACAAATGTCAAATCTGCTATTTTTGATCTGCTCCCC
65 CTATCTTCGATCTACTTC-ATGTAAATAAACAAATGTCAAATCTGCTATTTTCGATCTGCTCCCC
* * * * *
68639793 GTCTAATACAGAGACGCCAAATCTGTTATATTTAATCTGCTCCCTGTCATTACAGAGACACCAAA
129 ATCTAATACAGAGACGCCAAATCTGCTATATTCAATCTGCTCCCCGTCAATACAGAGACACCAAA
* *
68639858 TCGG-CTATCTTCGATCTGCT-TCGATGTAAACACACGAAT-TTCAGATCTTCTTATCTTTGATC
194 TCGGTC-ATCTTCAATCTCCTCT-GATGTAAACACACGAATGTT-AGATCTTCTTATCTTTGATC
68639920 TGCTCTCTATCTA
256 TGCTCTCTATCTA
* * * *
68639933 ATACAAAGACGCCAAATCTGTCATCTTCGATCTACTCCCTGTCGATATAGAGATGCCAAATCGGC
1 ATACAGAGACGCCAAATCTGTCATCTTCGATCTACTCCCTGTCAATACAGAGACGCCAAATCGGC
* * * * * * * * * *
68639998 TCTCTTTGATTTGCTCTC-TGTCAATACAGAAATG-CTAGATGTGCT-TTCTTCGATCTGCTCTC
66 TATCTTCGATCTACT-TCATGTAAATAAACAAATGTC-AAATCTGCTATT-TTCGATCTGCTCCC
* * * *
68640060 CATC-AATACAGAGATGCCAAATCTGCT-TCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCA
128 CATCTAATACAGAGACGCCAAATCTGCTATATTCAATCTGCTCCCCGTC-AATACAGAGACACCA
*
68640123 AATCTGTCATCTTCAATCTCCTCTGATGTAAACACACGAATGTTAGATCTTCTTATCTTTGATCT
192 AATCGGTCATCTTCAATCTCCTCTGATGTAAACACACGAATGTTAGATCTTCTTATCTTTGATCT
* *
68640188 TCTCTCTGTCTA
257 GCTCTCTATCTA
*
68640200 CTACAGAGACGCCAAATCTGTCA
1 ATACAGAGACGCCAAATCTGTCA
68640223 CCGGCGATTT
Statistics
Matches: 248, Mismatches: 34, Indels: 18
0.83 0.11 0.06
Matches are distributed among these distances:
266 16 0.06
267 123 0.50
268 39 0.16
269 67 0.27
270 3 0.01
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.32
Consensus pattern (268 bp):
ATACAGAGACGCCAAATCTGTCATCTTCGATCTACTCCCTGTCAATACAGAGACGCCAAATCGGC
TATCTTCGATCTACTTCATGTAAATAAACAAATGTCAAATCTGCTATTTTCGATCTGCTCCCCAT
CTAATACAGAGACGCCAAATCTGCTATATTCAATCTGCTCCCCGTCAATACAGAGACACCAAATC
GGTCATCTTCAATCTCCTCTGATGTAAACACACGAATGTTAGATCTTCTTATCTTTGATCTGCTC
TCTATCTA
Found at i:68651844 original size:106 final size:105
Alignment explanation
Indices: 68651659--68651855 Score: 254
Period size: 106 Copynumber: 1.9 Consensus size: 105
68651649 TATAAACTAG
* * * * *
68651659 ATGCTTTAACATTTCATGCAACTATAATATAGAAAATGATGAATAACAACATAAATTATATAATA
1 ATGCATTAACATTTCATGCAAATATAACATAGAAAATAATGAATAACAACATAAATTACATAATA
* *
68651724 TACATTAACCTTTCATGCAGATATAAAAAACATAAATATAC
66 TA-ATTAACATTTCATGCAAATATAAAAAACATAAATATAC
*
68651765 ATGCATTAATATTTCATGCAAAATATAACATAGAAAATAATGAATATAACAACATAAATTACAT-
1 ATGCATTAACATTTCATGC-AAATATAACATAGAAAATAATG-A-ATAACAACATAAATTACATA
* *
68651829 ATAT-ATTGATATTTCATGCAAATATAA
63 ATATAATTAACATTTCATGCAAATATAA
68651856 CTTAAATCAA
Statistics
Matches: 78, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
106 36 0.46
107 19 0.24
108 5 0.06
109 18 0.23
ACGTcount: A:0.50, C:0.12, G:0.07, T:0.32
Consensus pattern (105 bp):
ATGCATTAACATTTCATGCAAATATAACATAGAAAATAATGAATAACAACATAAATTACATAATA
TAATTAACATTTCATGCAAATATAAAAAACATAAATATAC
Found at i:68652007 original size:22 final size:23
Alignment explanation
Indices: 68651963--68652007 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
68651953 AAATGATACT
* *
68651963 AAATAAATCCAAAAATATGTAAA
1 AAATAAATCAAAAAATATATAAA
*
68651986 AAATAAAT-AAAAAATTTATAAA
1 AAATAAATCAAAAAATATATAAA
68652008 CATATAAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.69, C:0.04, G:0.02, T:0.24
Consensus pattern (23 bp):
AAATAAATCAAAAAATATATAAA
Found at i:68652337 original size:20 final size:19
Alignment explanation
Indices: 68652307--68652345 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
68652297 ATACATAATT
68652307 AATGAATAATAAATAATAA
1 AATGAATAATAAATAATAA
*
68652326 AATGATATAATATATAATAA
1 AATGA-ATAATAAATAATAA
68652346 TCTTTACATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31
Consensus pattern (19 bp):
AATGAATAATAAATAATAA
Found at i:68652365 original size:19 final size:19
Alignment explanation
Indices: 68652341--68652383 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
68652331 TATAATATAT
68652341 AATAATCTTTACA-TAAATA
1 AATAATCTTTACAGTAAA-A
* *
68652360 AATAATGTTTATAGTAAAA
1 AATAATCTTTACAGTAAAA
68652379 AATAA
1 AATAA
68652384 ATAATATATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 17 0.81
20 4 0.19
ACGTcount: A:0.56, C:0.05, G:0.05, T:0.35
Consensus pattern (19 bp):
AATAATCTTTACAGTAAAA
Found at i:68652405 original size:23 final size:26
Alignment explanation
Indices: 68652378--68652429 Score: 86
Period size: 27 Copynumber: 2.0 Consensus size: 26
68652368 TTATAGTAAA
*
68652378 AAATAAATAATATATAAAATATTTAAT
1 AAATAAATTATATA-AAAATATTTAAT
68652405 AAATAAATTATATAAAAATATTTAA
1 AAATAAATTATATAAAAATATTTAA
68652430 AAGGATTAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 11 0.46
27 13 0.54
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (26 bp):
AAATAAATTATATAAAAATATTTAAT
Found at i:68661359 original size:4 final size:4
Alignment explanation
Indices: 68661352--68661538 Score: 140
Period size: 4 Copynumber: 46.8 Consensus size: 4
68661342 AAGTATAAAG
* * * * *
68661352 TATA TATA TATG TATA TATA TGTA TGTA TATA TATG TATA TATA TGTA
1 TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA
* * * * * * * *
68661400 TATA TATG TATG TATG TATG TATA TATG TATG TATA TATG TGTA TATA
1 TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA
* * * * * * *
68661448 TGTA TATA TATG TATA TACA TATA TATA CATA TATA CACA TATA TACA
1 TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA
* * * * * *
68661496 TACA TACA TACA TATA TATA CATA TATA TACA TACA TATA TAT
1 TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TAT
68661539 GAAGCTATGA
Statistics
Matches: 149, Mismatches: 34, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
4 149 1.00
ACGTcount: A:0.42, C:0.06, G:0.08, T:0.44
Consensus pattern (4 bp):
TATA
Found at i:68661369 original size:10 final size:10
Alignment explanation
Indices: 68661352--68661475 Score: 131
Period size: 10 Copynumber: 12.2 Consensus size: 10
68661342 AAGTATAAAG
*
68661352 TATATATATA
1 TATATGTATA
* *
68661362 TGTATATATA
1 TATATGTATA
*
68661372 TGTATGTATA
1 TATATGTATA
68661382 TATATGTATA
1 TATATGTATA
68661392 TATATGTATA
1 TATATGTATA
68661402 TATATGTATGTA
1 TATATGTA--TA
*
68661414 TGTATGTATA
1 TATATGTATA
* * *
68661424 TATGTATGTA
1 TATATGTATA
*
68661434 TATATGTGTA
1 TATATGTATA
68661444 TATATGTATA
1 TATATGTATA
68661454 TATATGTATA
1 TATATGTATA
* *
68661464 TACATATATA
1 TATATGTATA
68661474 TA
1 TA
68661476 CATATATACA
Statistics
Matches: 99, Mismatches: 13, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
10 90 0.91
12 9 0.09
ACGTcount: A:0.38, C:0.01, G:0.12, T:0.49
Consensus pattern (10 bp):
TATATGTATA
Found at i:68661476 original size:10 final size:10
Alignment explanation
Indices: 68661450--68661535 Score: 100
Period size: 10 Copynumber: 8.6 Consensus size: 10
68661440 TGTATATATG
* *
68661450 TATATATATG
1 TATATACATA
68661460 TATATACATA
1 TATATACATA
68661470 TATATACATA
1 TATATACATA
*
68661480 TATACACATA
1 TATATACATA
* * *
68661490 TATACATACA
1 TATATACATA
*
68661500 TACATACATA
1 TATATACATA
68661510 TATATACATA
1 TATATACATA
68661520 TATATACATA
1 TATATACATA
*
68661530 CATATA
1 TATATA
68661536 TATGAAGCTA
Statistics
Matches: 65, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
10 65 1.00
ACGTcount: A:0.49, C:0.13, G:0.01, T:0.37
Consensus pattern (10 bp):
TATATACATA
Found at i:68661538 original size:18 final size:18
Alignment explanation
Indices: 68661463--68661533 Score: 88
Period size: 18 Copynumber: 3.9 Consensus size: 18
68661453 ATATATGTAT
*
68661463 ATACATATATATACATAT
1 ATACATATATATACATAC
*
68661481 ATACACATATATACATAC
1 ATACATATATATACATAC
* *
68661499 ATACATACATATATATAC
1 ATACATATATATACATAC
* *
68661517 ATATATATACATACATA
1 ATACATATATATACATA
68661534 TATATGAAGC
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 44 1.00
ACGTcount: A:0.51, C:0.15, G:0.00, T:0.34
Consensus pattern (18 bp):
ATACATATATATACATAC
Found at i:68663028 original size:9 final size:9
Alignment explanation
Indices: 68663014--68663038 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
68663004 ATATATTTTG
68663014 CATTTTATT
1 CATTTTATT
68663023 CATTTTATT
1 CATTTTATT
68663032 CATTTTA
1 CATTTTA
68663039 GTCTTTATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.24, C:0.12, G:0.00, T:0.64
Consensus pattern (9 bp):
CATTTTATT
Found at i:68665382 original size:44 final size:45
Alignment explanation
Indices: 68665334--68665423 Score: 155
Period size: 44 Copynumber: 2.0 Consensus size: 45
68665324 TCATTTCATT
*
68665334 CAATTTAATCCATATACACATATTTAGGGCACTTTACA-TTTAGC
1 CAATTTAATCCATATACACAAATTTAGGGCACTTTACATTTTAGC
*
68665378 CAATTTAATCCATATACACAAATTTAGGGCAGTTTACATTTTAGC
1 CAATTTAATCCATATACACAAATTTAGGGCACTTTACATTTTAGC
68665423 C
1 C
68665424 CTTGTATTTT
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
44 36 0.84
45 7 0.16
ACGTcount: A:0.34, C:0.20, G:0.10, T:0.36
Consensus pattern (45 bp):
CAATTTAATCCATATACACAAATTTAGGGCACTTTACATTTTAGC
Found at i:68674444 original size:25 final size:25
Alignment explanation
Indices: 68674416--68674495 Score: 124
Period size: 25 Copynumber: 3.2 Consensus size: 25
68674406 TTACAAAGGG
**
68674416 AAAGTCCTAATCTAATTCCTAATTT
1 AAAGTCCTAATAGAATTCCTAATTT
* *
68674441 AAAGTACTAATAGAATTCTTAATTT
1 AAAGTCCTAATAGAATTCCTAATTT
68674466 AAAGTCCTAATAGAATTCCTAATTT
1 AAAGTCCTAATAGAATTCCTAATTT
68674491 AAAGT
1 AAAGT
68674496 TTATAAAAAA
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 49 1.00
ACGTcount: A:0.41, C:0.14, G:0.07, T:0.38
Consensus pattern (25 bp):
AAAGTCCTAATAGAATTCCTAATTT
Found at i:68678176 original size:331 final size:331
Alignment explanation
Indices: 68677574--68678240 Score: 1316
Period size: 331 Copynumber: 2.0 Consensus size: 331
68677564 TATCAGACCT
68677574 TTCTAATGGTATTGTATAAAAATCGACTTGCAAGTTGTCATTGGCCACAACGAACTGTACTGATT
1 TTCTAATGGTATTGTATAAAAATCGACTTGCAAGTTGTCATTGGCCACAACGAACTGTACTGATT
68677639 TACAAATGCCTATGCTAGGAACCCATTCTCCATTTGCCATACATACTTGCAGCCCAGATTTCTTT
66 TACAAATGCCTATGCTAGGAACCCATTCTCCATTTGCCATACATACTTGCAGCCCAGATTTCTTT
68677704 TGTATTTTCAGTCCCAATCTTGGCACTAAACCTTCACGTAGAAAGTTGTGTACTGCCCAAATCAA
131 TGTATTTTCAGTCCCAATCTTGGCACTAAACCTTCACGTAGAAAGTTGTGTACTGCCCAAATCAA
68677769 CAAGAACTAACACTATTTTTCCTGACACCTTTACTGTTAGTTGCATAATAGATGAATTGCAAGTT
196 CAAGAACTAACACTATTTTTCCTGACACCTTTACTGTTAGTTGCATAATAGATGAATTGCAAGTT
68677834 CCTCTAATGGCATGTAAAGAAATTTCAAAATCATCTACCTCATCATCTTGCTCATCTTCAGTATC
261 CCTCTAATGGCATGTAAAGAAATTTCAAAATCATCTACCTCATCATCTTGCTCATCTTCAGTATC
68677899 TGGTAC
326 TGGTAC
*
68677905 TTCTAATGGTATTGTATAAAAATCGGCTTGCAAGTTGTCATTGGCCACAACGAACTGTACTGATT
1 TTCTAATGGTATTGTATAAAAATCGACTTGCAAGTTGTCATTGGCCACAACGAACTGTACTGATT
68677970 TACAAATGCCTATGCTAGGAACCCATTCTCCATTTGCCATACATACTTGCAGCCCAGATTTCTTT
66 TACAAATGCCTATGCTAGGAACCCATTCTCCATTTGCCATACATACTTGCAGCCCAGATTTCTTT
68678035 TGTATTTTCAGTCCCAATCTTGGCACTAAACCTTCACGTAGAAAGTTGTGTACTGCCCAAATCAA
131 TGTATTTTCAGTCCCAATCTTGGCACTAAACCTTCACGTAGAAAGTTGTGTACTGCCCAAATCAA
68678100 CAAGAACTAACACTATTTTTCCTGACACCTTTACTGTTAGTTGCATAATAGATGAATTGCAAGTT
196 CAAGAACTAACACTATTTTTCCTGACACCTTTACTGTTAGTTGCATAATAGATGAATTGCAAGTT
*
68678165 CCTCTAATGGCATGTAAAGAAATTTCAAAGTCATCTACCTCATCATCTTGCTCATCTTCAGTATC
261 CCTCTAATGGCATGTAAAGAAATTTCAAAATCATCTACCTCATCATCTTGCTCATCTTCAGTATC
68678230 TGGTAC
326 TGGTAC
68678236 TTCTA
1 TTCTA
68678241 TCCAAAATAG
Statistics
Matches: 334, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
331 334 1.00
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.33
Consensus pattern (331 bp):
TTCTAATGGTATTGTATAAAAATCGACTTGCAAGTTGTCATTGGCCACAACGAACTGTACTGATT
TACAAATGCCTATGCTAGGAACCCATTCTCCATTTGCCATACATACTTGCAGCCCAGATTTCTTT
TGTATTTTCAGTCCCAATCTTGGCACTAAACCTTCACGTAGAAAGTTGTGTACTGCCCAAATCAA
CAAGAACTAACACTATTTTTCCTGACACCTTTACTGTTAGTTGCATAATAGATGAATTGCAAGTT
CCTCTAATGGCATGTAAAGAAATTTCAAAATCATCTACCTCATCATCTTGCTCATCTTCAGTATC
TGGTAC
Found at i:68679432 original size:12 final size:12
Alignment explanation
Indices: 68679415--68679483 Score: 57
Period size: 12 Copynumber: 5.6 Consensus size: 12
68679405 AAAGGGAAAG
*
68679415 TCCTAATCTAAT
1 TCCTAATATAAT
*
68679427 TCCTAATTTAAT
1 TCCTAATATAAT
*
68679439 GTCCTAATAAAAT
1 -TCCTAATATAAT
* * *
68679452 TCTTAATTTAAAG
1 TCCTAATAT-AAT
*
68679465 TCCTAATAGAAT
1 TCCTAATATAAT
68679477 TCCTAAT
1 TCCTAAT
68679484 TTAAAGTTTA
Statistics
Matches: 44, Mismatches: 11, Indels: 4
0.75 0.19 0.07
Matches are distributed among these distances:
12 26 0.59
13 18 0.41
ACGTcount: A:0.38, C:0.17, G:0.04, T:0.41
Consensus pattern (12 bp):
TCCTAATATAAT
Found at i:68679442 original size:25 final size:25
Alignment explanation
Indices: 68679411--68679490 Score: 115
Period size: 25 Copynumber: 3.2 Consensus size: 25
68679401 TTACAAAGGG
**
68679411 AAAGTCCTAATCTAATTCCTAATTT
1 AAAGTCCTAATAAAATTCCTAATTT
* *
68679436 AATGTCCTAATAAAATTCTTAATTT
1 AAAGTCCTAATAAAATTCCTAATTT
*
68679461 AAAGTCCTAATAGAATTCCTAATTT
1 AAAGTCCTAATAAAATTCCTAATTT
68679486 AAAGT
1 AAAGT
68679491 TTATAAAAAA
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 48 1.00
ACGTcount: A:0.40, C:0.15, G:0.06, T:0.39
Consensus pattern (25 bp):
AAAGTCCTAATAAAATTCCTAATTT
Found at i:68681494 original size:30 final size:30
Alignment explanation
Indices: 68681454--68681514 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
68681444 AGTAAGTTAT
*
68681454 GATACCTTTTCAGGCTAGTTTCAGATAATC
1 GATACATTTTCAGGCTAGTTTCAGATAATC
*
68681484 GATACATTTTCAGTCTAGTTTCAGATAATC
1 GATACATTTTCAGGCTAGTTTCAGATAATC
68681514 G
1 G
68681515 CAGCACTATT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (30 bp):
GATACATTTTCAGGCTAGTTTCAGATAATC
Found at i:68696649 original size:31 final size:31
Alignment explanation
Indices: 68696614--68696676 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
68696604 TGGCCACAAC
68696614 ATGGAGAACGAGCAATTAAATTACATGGGTA
1 ATGGAGAACGAGCAATTAAATTACATGGGTA
*
68696645 ATGGAGAACGAGCAATTAAATTACATTGGTA
1 ATGGAGAACGAGCAATTAAATTACATGGGTA
68696676 A
1 A
68696677 CAATCCTTGA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.43, C:0.10, G:0.24, T:0.24
Consensus pattern (31 bp):
ATGGAGAACGAGCAATTAAATTACATGGGTA
Found at i:68706530 original size:43 final size:43
Alignment explanation
Indices: 68706483--68706580 Score: 126
Period size: 43 Copynumber: 2.3 Consensus size: 43
68706473 TAGCCCAGCT
*
68706483 ATGGTCTTACACGAAATCAAATAACGATACCAATTTC-CTAGAC
1 ATGGTCTTACACGAAATCAAATAACGATACCAATGTCTC-AGAC
* * * *
68706526 ATGGTCTTACACGTAATCACATAATGATGCCAATGTCTCAGAC
1 ATGGTCTTACACGAAATCAAATAACGATACCAATGTCTCAGAC
*
68706569 TTGGTCTTACAC
1 ATGGTCTTACAC
68706581 ATAAACACAT
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
43 47 0.98
44 1 0.02
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.29
Consensus pattern (43 bp):
ATGGTCTTACACGAAATCAAATAACGATACCAATGTCTCAGAC
Found at i:68708021 original size:287 final size:287
Alignment explanation
Indices: 68707505--68708084 Score: 1106
Period size: 287 Copynumber: 2.0 Consensus size: 287
68707495 ATTTAAATCA
* *
68707505 TTAAATATAAGGCCATCTTTGTCAAATTCCACTGTCAATGGTCTAATTACATCATAAGGACTTTT
1 TTAAATATAAGGCCATCTTTGTCAAATTCCACTGTCAACGGTCTAATAACATCATAAGGACTTTT
68707570 CATTTAATAAGTCATAGCAATTATGCACTTAAAAAAATAAAATTTAACTTTTGCATTTGACGCGA
66 CATTTAATAAGTCATAGCAATTATGCACTTAAAAAAATAAAATTTAACTTTTGCATTTGACGCGA
*
68707635 TATAGTCCTTTTTATCAAATTAAGCATCTAAACGCTAAAATTATTTCACGAAAATTTCACATATA
131 TATAGTCCTTTTTATCAAATTAAGCATCCAAACGCTAAAATTATTTCACGAAAATTTCACATATA
68707700 TATAGTCACATGTTATAAACACCAAAAAAATAATATTAAAATAATTTTCCCACCTCAAATTTTTG
196 TATAGTCACATGTTATAAACACCAAAAAAATAATATTAAAATAATTTTCCCACCTCAAATTTTTG
**
68707765 GTTCTGAAACCACTGTTCTGATTTAGC
261 GTTCCCAAACCACTGTTCTGATTTAGC
68707792 TTAAATATAAGGCCATCTTTGTCAAATTCCACTGTCAACGGTCTAATAACATCATAAGGACTTTT
1 TTAAATATAAGGCCATCTTTGTCAAATTCCACTGTCAACGGTCTAATAACATCATAAGGACTTTT
68707857 CATTTAATAAGTCATAGCAATTATGCACTTAAAAAAATAAAATTTAACTTTTGCATTTGACGCGA
66 CATTTAATAAGTCATAGCAATTATGCACTTAAAAAAATAAAATTTAACTTTTGCATTTGACGCGA
68707922 TATAGTCCTTTTTATCAAATTAAGCATCCAAACGCTAAAATTATTTCACGAAAATTTCACATATA
131 TATAGTCCTTTTTATCAAATTAAGCATCCAAACGCTAAAATTATTTCACGAAAATTTCACATATA
68707987 TATAGTCACATGTTATAAACACCAAAAAAATAATATTAAAATAATTTTCCCACCTCAAATTTTTG
196 TATAGTCACATGTTATAAACACCAAAAAAATAATATTAAAATAATTTTCCCACCTCAAATTTTTG
68708052 GTTCCCAAACCACTGTTCTGATTTAGC
261 GTTCCCAAACCACTGTTCTGATTTAGC
*
68708079 TAAAAT
1 TTAAAT
68708085 CGGGCTGTTA
Statistics
Matches: 287, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
287 287 1.00
ACGTcount: A:0.38, C:0.18, G:0.09, T:0.35
Consensus pattern (287 bp):
TTAAATATAAGGCCATCTTTGTCAAATTCCACTGTCAACGGTCTAATAACATCATAAGGACTTTT
CATTTAATAAGTCATAGCAATTATGCACTTAAAAAAATAAAATTTAACTTTTGCATTTGACGCGA
TATAGTCCTTTTTATCAAATTAAGCATCCAAACGCTAAAATTATTTCACGAAAATTTCACATATA
TATAGTCACATGTTATAAACACCAAAAAAATAATATTAAAATAATTTTCCCACCTCAAATTTTTG
GTTCCCAAACCACTGTTCTGATTTAGC
Found at i:68715428 original size:44 final size:44
Alignment explanation
Indices: 68715339--68715460 Score: 121
Period size: 44 Copynumber: 2.8 Consensus size: 44
68715329 GCGAATTGGA
* *
68715339 ATAGCTTCGGCT-ATA-T-AAGGCACTAAGTGTGCGATACTGAG
1 ATAGCTTCGGCTAATACTGATGGCACTAAGTGTGCGAGACTGAG
* * **
68715380 ATAGCTTCGGTTTAAT-GTGATGGCACTAAGTGTGCGAGA-TCGTT
1 ATAGCTTCGG-CTAATACTGATGGCACTAAGTGTGCGAGACT-GAG
68715424 ATAGCTTCGGCTAATCACTGAT-GCACTAAGTGTGCGA
1 ATAGCTTCGGCTAAT-ACTGATGGCACTAAGTGTGCGA
68715461 ATTTTTAGAG
Statistics
Matches: 67, Mismatches: 7, Indels: 11
0.79 0.08 0.13
Matches are distributed among these distances:
41 10 0.15
42 1 0.01
43 8 0.12
44 44 0.66
45 4 0.06
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (44 bp):
ATAGCTTCGGCTAATACTGATGGCACTAAGTGTGCGAGACTGAG
Found at i:68718637 original size:18 final size:18
Alignment explanation
Indices: 68718614--68718895 Score: 147
Period size: 18 Copynumber: 15.3 Consensus size: 18
68718604 GAATAATTAT
*
68718614 TTATTCAGTAACAGTCAG
1 TTATTCAGTAACAATCAG
* *
68718632 TTATTCGGTAACAATCAA
1 TTATTCAGTAACAATCAG
* *
68718650 TTATTCAATAATAATCAG
1 TTATTCAGTAACAATCAG
*
68718668 TTATTCAGTATCGATCAATTGATCGG
1 TTATTCAGTA---A-C-A---ATCAG
* * *
68718694 TTATCCAGTAACAGTCAA
1 TTATTCAGTAACAATCAG
68718712 TTATTCAGTAA-AATCAG
1 TTATTCAGTAACAATCAG
* * *
68718729 ATATTCAGTAACTATTAAG
1 TTATTCAGTAAC-AATCAG
* *
68718748 TTATTCAGTAGCAATTA-
1 TTATTCAGTAACAATCAG
**
68718765 TTCATTCAGTGGCAATCAG
1 TT-ATTCAGTAACAATCAG
** *
68718784 TTATTCAGTAATGATCAA
1 TTATTCAGTAACAATCAG
* * *
68718802 TTATTCAATAATATTCAG
1 TTATTCAGTAACAATCAG
* *
68718820 TTATTCAGTAACAGTTA-
1 TTATTCAGTAACAATCAG
* * * * *
68718837 ATATCCAGTAATATTCAA
1 TTATTCAGTAACAATCAG
* * * *
68718855 TTATCCGGTAACAGTCAA
1 TTATTCAGTAACAATCAG
*
68718873 TTATTCAGTAATAATCAG
1 TTATTCAGTAACAATCAG
68718891 TTATT
1 TTATT
68718896 TTATACCTTT
Statistics
Matches: 198, Mismatches: 53, Indels: 26
0.71 0.19 0.09
Matches are distributed among these distances:
17 28 0.14
18 136 0.69
19 16 0.08
21 2 0.01
22 1 0.01
23 2 0.01
26 13 0.07
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.37
Consensus pattern (18 bp):
TTATTCAGTAACAATCAG
Found at i:68718656 original size:36 final size:36
Alignment explanation
Indices: 68718614--68718895 Score: 176
Period size: 36 Copynumber: 7.6 Consensus size: 36
68718604 GAATAATTAT
* *
68718614 TTATTCAGTAACAGTCAGTTATTCGGTAACAATCAA
1 TTATTCAGTAACAATCAGTTATTCAGTAACAATCAA
* * * *
68718650 TTATTCAATAATAATCAGTTATTCAGTATCGATCAA
1 TTATTCAGTAACAATCAGTTATTCAGTAACAATCAA
* *
68718686 TTGATCGGTTATCCAGTAACAGTCAATTATTCAGTAA-AATCAGA
1 TT-A-----T-T-CAGTAACAATCAGTTATTCAGTAACAATCA-A
* * * *
68718730 -TATTCAGTAACTATTAAGTTATTCAGTAGCAAT-TA
1 TTATTCAGTAAC-AATCAGTTATTCAGTAACAATCAA
** **
68718765 TTCATTCAGTGGCAATCAGTTATTCAGTAATGATCAA
1 TT-ATTCAGTAACAATCAGTTATTCAGTAACAATCAA
* * * * *
68718802 TTATTCAATAATATTCAGTTATTCAGTAACAGTTAA
1 TTATTCAGTAACAATCAGTTATTCAGTAACAATCAA
* * * * * * *
68718838 -TATCCAGTAATATTCAATTATCCGGTAACAGTCAA
1 TTATTCAGTAACAATCAGTTATTCAGTAACAATCAA
*
68718873 TTATTCAGTAATAATCAGTTATT
1 TTATTCAGTAACAATCAGTTATT
68718896 TTATACCTTT
Statistics
Matches: 187, Mismatches: 44, Indels: 30
0.72 0.17 0.11
Matches are distributed among these distances:
35 37 0.20
36 106 0.57
37 16 0.09
42 2 0.01
43 6 0.03
44 20 0.11
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.37
Consensus pattern (36 bp):
TTATTCAGTAACAATCAGTTATTCAGTAACAATCAA
Found at i:68719009 original size:6 final size:6
Alignment explanation
Indices: 68719000--68719024 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
68718990 CCGAAGCCGG
68719000 AACAGT AACAGT AACAGT AACAGT A
1 AACAGT AACAGT AACAGT AACAGT A
68719025 GCAGCACGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.52, C:0.16, G:0.16, T:0.16
Consensus pattern (6 bp):
AACAGT
Found at i:68719129 original size:12 final size:12
Alignment explanation
Indices: 68719112--68719136 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
68719102 AGTGCCGAAT
68719112 CGGTAACAGTAA
1 CGGTAACAGTAA
68719124 CGGTAACAGTAA
1 CGGTAACAGTAA
68719136 C
1 C
68719137 AATATTCGAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.20, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTAACAGTAA
Found at i:68719130 original size:45 final size:45
Alignment explanation
Indices: 68719069--68719269 Score: 267
Period size: 45 Copynumber: 4.3 Consensus size: 45
68719059 ATCTGGAACA
* * *
68719069 GTAATAGTAACAGTAACAGTATTCAACACACAAAGTGCCGAATCG
1 GTAACAGTAACAGTAACAATATTCGACACACAAAGTGCCGAATCG
*
68719114 GTAACAGTAACGGTAACAGTAACAATATTCGACACACACAGTGCCGAATCG
1 GTAAC----A--GTAACAGTAACAATATTCGACACACAAAGTGCCGAATCG
* * *
68719165 GTAACAGTAGCAGTAATAATATCCGACACACAAAGTGCCGAATCG
1 GTAACAGTAACAGTAACAATATTCGACACACAAAGTGCCGAATCG
*
68719210 GTAACAGTAGCAGTAACAATATTCGACACACAAAGTGCCGAATCG
1 GTAACAGTAACAGTAACAATATTCGACACACAAAGTGCCGAATCG
*
68719255 GTAACAGTAGCAGTA
1 GTAACAGTAACAGTA
68719270 GCGGTAATAG
Statistics
Matches: 140, Mismatches: 10, Indels: 12
0.86 0.06 0.07
Matches are distributed among these distances:
45 97 0.69
47 1 0.01
49 1 0.01
51 41 0.29
ACGTcount: A:0.40, C:0.21, G:0.20, T:0.18
Consensus pattern (45 bp):
GTAACAGTAACAGTAACAATATTCGACACACAAAGTGCCGAATCG
Found at i:68719278 original size:96 final size:93
Alignment explanation
Indices: 68719094--68719269 Score: 295
Period size: 90 Copynumber: 1.9 Consensus size: 93
68719084 ACAGTATTCA
*
68719094 ACACACAAAGTGCCGAATCGGTAACAGTAACGGTAACAGTAACAATATTCGACACACACAGTGCC
1 ACACACAAAGTGCCGAATCGGTAACAGTAAC-G--ACAGTAACAATATTCGACACACAAAGTGCC
68719159 GAATCGGTAACAGTAGCAGTAATAATATCCG
63 GAATCGGTAACAGTAGCAGTAATAATATCCG
68719190 ACACACAAAGTGCCGAATCGGTAACAGT-A-G-CAGTAACAATATTCGACACACAAAGTGCCGAA
1 ACACACAAAGTGCCGAATCGGTAACAGTAACGACAGTAACAATATTCGACACACAAAGTGCCGAA
68719252 TCGGTAACAGTAGCAGTA
66 TCGGTAACAGTAGCAGTA
68719270 GCGGTAATAG
Statistics
Matches: 79, Mismatches: 1, Indels: 6
0.92 0.01 0.07
Matches are distributed among these distances:
90 49 0.62
93 1 0.01
95 1 0.01
96 28 0.35
ACGTcount: A:0.40, C:0.23, G:0.20, T:0.17
Consensus pattern (93 bp):
ACACACAAAGTGCCGAATCGGTAACAGTAACGACAGTAACAATATTCGACACACAAAGTGCCGAA
TCGGTAACAGTAGCAGTAATAATATCCG
Found at i:68719901 original size:25 final size:26
Alignment explanation
Indices: 68719846--68719902 Score: 64
Period size: 25 Copynumber: 2.2 Consensus size: 26
68719836 ACATATTCAT
*
68719846 AATTTATTTTATTTTTATTCAATCCA
1 AATTTATTTTATTTTTATCCAATCCA
* *
68719872 TATTTA-TTTATTTATTGTCCAAT-CA
1 AATTTATTTTATTT-TTATCCAATCCA
68719897 AATTTA
1 AATTTA
68719903 AAATCACTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
25 14 0.54
26 12 0.46
ACGTcount: A:0.32, C:0.11, G:0.02, T:0.56
Consensus pattern (26 bp):
AATTTATTTTATTTTTATCCAATCCA
Found at i:68720085 original size:21 final size:21
Alignment explanation
Indices: 68720060--68720120 Score: 63
Period size: 21 Copynumber: 2.9 Consensus size: 21
68720050 TTTAATTTCA
68720060 ATTCAATAA-CAATTCACATAT
1 ATTCAATAATCAATTCA-ATAT
68720081 ATTC-ATAAATCAATTCAATAT
1 ATTCAAT-AATCAATTCAATAT
* * *
68720102 AATCAATATTCAATCCAAT
1 ATTCAATAATCAATTCAAT
68720121 TCATATAATC
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
20 2 0.06
21 23 0.68
22 9 0.26
ACGTcount: A:0.48, C:0.18, G:0.00, T:0.34
Consensus pattern (21 bp):
ATTCAATAATCAATTCAATAT
Found at i:68741016 original size:14 final size:15
Alignment explanation
Indices: 68740994--68741026 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
68740984 AGAGAGAATG
68740994 ATGAATGATG-AGGA
1 ATGAATGATGAAGGA
*
68741008 ATGATTGATGAAGGA
1 ATGAATGATGAAGGA
68741023 ATGA
1 ATGA
68741027 GAGGGTCTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.42, C:0.00, G:0.33, T:0.24
Consensus pattern (15 bp):
ATGAATGATGAAGGA
Found at i:68742510 original size:27 final size:27
Alignment explanation
Indices: 68742462--68742620 Score: 175
Period size: 27 Copynumber: 5.9 Consensus size: 27
68742452 GCGAGGCTGC
* *
68742462 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
68742489 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
*
68742515 CAAATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
68742542 CAGATAATCGTGGCATAGCCACCAGA-A
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
68742569 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
68742596 TAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
68742621 GACGCTTCCT
Statistics
Matches: 114, Mismatches: 10, Indels: 16
0.81 0.07 0.11
Matches are distributed among these distances:
26 9 0.08
27 100 0.88
28 5 0.04
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Done.