Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 201 of 295
Found at i:68742562 original size:54 final size:54
Alignment explanation
Indices: 68742480--68742620 Score: 230
Period size: 54 Copynumber: 2.6 Consensus size: 54
68742470 GTGACGAAGT
*
68742480 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAAATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGAACAAATATATGTGGCAGAGC
* *
68742534 CACCAGATCAGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAAATATATGTGGCAGAGC
*
68742588 CACCAGATTAGATAATTGTGGCATAGCCACCAG
1 CACCAGATCAGATAATTGTGGCATAGCCACCAG
68742621 GACGCTTCCT
Statistics
Matches: 81, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
53 5 0.06
54 76 0.94
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.18
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAAATATATGTGGCAGAGC
Found at i:68744273 original size:26 final size:26
Alignment explanation
Indices: 68744242--68744349 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
68744232 TGAAATGCCC
*
68744242 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
68744268 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
68744294 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
68744320 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
68744346 ATCA
1 ATCA
68744350 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:68746283 original size:23 final size:23
Alignment explanation
Indices: 68746257--68746314 Score: 64
Period size: 23 Copynumber: 2.5 Consensus size: 23
68746247 CTTATTTAGT
* *
68746257 AGAAATTAAATCCTAATTATGAA
1 AGAAATTAAATCCTAATAACGAA
68746280 AGAAA-TAAATTCCTAATAACGAA
1 AGAAATTAAA-TCCTAATAACGAA
*
68746303 AAATAATTAAAT
1 AGA-AATTAAAT
68746315 AAATAACAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
22 4 0.14
23 18 0.62
24 3 0.10
25 4 0.14
ACGTcount: A:0.57, C:0.09, G:0.07, T:0.28
Consensus pattern (23 bp):
AGAAATTAAATCCTAATAACGAA
Found at i:68748177 original size:27 final size:27
Alignment explanation
Indices: 68748158--68748394 Score: 280
Period size: 27 Copynumber: 8.8 Consensus size: 27
68748148 ATTACCAAAG
**
68748158 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCATTT
**
68748185 TACCCTTAATTTACA-AAGTTACCATTT
1 TACCCTCGATTTACAGAA-TTACCATTT
* *
68748212 TACCCTTGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
*
68748239 TACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
68748266 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* * * *
68748293 TACCCTTGATTTATAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
68748320 TACCCTCAATTTACAGAATTACC-GTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
68748346 TACCCTCAATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
68748373 TACCCTCGATTTTCAAAATTAC
1 TACCCTCGATTTACAGAATTAC
68748395 TAAAATACCT
Statistics
Matches: 184, Mismatches: 23, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
26 27 0.15
27 155 0.84
28 2 0.01
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCATTT
Found at i:68748248 original size:81 final size:81
Alignment explanation
Indices: 68748139--68748394 Score: 347
Period size: 81 Copynumber: 3.2 Consensus size: 81
68748129 AATGCCCTCA
* *** *
68748139 ATTTGTAAAATTACCAAAGTACCCTCGATTTACAGAATTACTGTTTTACCCTTAATTTACA-AAG
1 ATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCAATTTACAGAA-
*
68748203 TTACCATTTTACCCTTG
65 TTACCGTTTTACCCTTG
* * * *
68748220 ATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTATAGAAT
1 ATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCAATTTACAGAAT
68748285 TACCGTTTTACCCTTG
66 TACCGTTTTACCCTTG
* * *
68748301 ATTTATAAAATTACCGTTTTACCCTCAATTTACAGAATTACCG-TTTACCCTCAATTTACAGAAT
1 ATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCAATTTACAGAAT
*
68748365 TACCGTTTTACCCTCG
66 TACCGTTTTACCCTTG
68748381 ATTT-TCAAAATTAC
1 ATTTAT-AAAATTAC
68748395 TAAAATACCT
Statistics
Matches: 155, Mismatches: 18, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
79 1 0.01
80 46 0.30
81 106 0.68
82 2 0.01
ACGTcount: A:0.31, C:0.22, G:0.08, T:0.39
Consensus pattern (81 bp):
ATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCAATTTACAGAAT
TACCGTTTTACCCTTG
Found at i:68748403 original size:27 final size:26
Alignment explanation
Indices: 68748373--68748580 Score: 125
Period size: 27 Copynumber: 7.7 Consensus size: 26
68748363 ATTACCGTTT
*
68748373 TACCCTCGATTTTCAAAATTACTAAAA
1 TACCCTCGATTTT-AAAATTACCAAAA
* * * *
68748400 TACCTTTGGTTTAAAAAATTACCAAAA
1 TACCCTCGATTT-TAAAATTACCAAAA
*
68748427 TACCCTCGATTAGTAAAATTACCAAAA
1 TACCCTCGATT-TTAAAATTACCAAAA
* *
68748454 TACCC-CTAGTTTGTAAAATTACTAAAA
1 TACCCTCGA-TTT-TAAAATTACCAAAA
* *
68748481 TACCC-CTGGTTTGTAAAATTACAAAAA
1 TACCCTC-GATTT-TAAAATTACCAAAA
* * * *
68748508 AACCCCTGGCTTGTAAAATTACCAAAA
1 TA-CCCTCGATTTTAAAATTACCAAAA
* * *
68748535 TACCC-CTGATTTGTGAAATTATCGAAA
1 TACCCTC-GATTT-TAAAATTACCAAAA
* *
68748562 TACTCTCTATTTGTAAAAT
1 TACCCTCGATTT-TAAAAT
68748581 ATCGAAATAC
Statistics
Matches: 140, Mismatches: 31, Indels: 20
0.73 0.16 0.10
Matches are distributed among these distances:
26 8 0.06
27 125 0.89
28 7 0.05
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.32
Consensus pattern (26 bp):
TACCCTCGATTTTAAAATTACCAAAA
Found at i:68748418 original size:107 final size:108
Alignment explanation
Indices: 68748185--68748423 Score: 275
Period size: 107 Copynumber: 2.2 Consensus size: 108
68748175 ATTACTGTTT
* * * ** * * *
68748185 TACCCTTAATTTACAAAGTTACCATTTTACCCTTGATTTATAGAATTACCATTTTACCCTCGATT
1 TACCCTTGATTTAAAAAATTACCATTTTACCCTCAATTTACAGAATTACCAGTTTACCCTCAATT
* * ****
68748250 TACAGAATTACTATTTTACCCTCGATTTATAGAATTACCGTTT
66 TACAGAATTACCATTTTACCCTCGATTTATAAAATTACCAAAA
* *
68748293 TACCCTTGATTTATAAAATTACCGTTTTACCCTCAATTTACAGAATTACC-GTTTACCCTCAATT
1 TACCCTTGATTTAAAAAATTACCATTTTACCCTCAATTTACAGAATTACCAGTTTACCCTCAATT
* *
68748357 TACAGAATTACCGTTTTACCCTCGATTT-TCAAAATTACTAAAA
66 TACAGAATTACCATTTTACCCTCGATTTAT-AAAATTACCAAAA
* *
68748400 TACCTTTGGTTTAAAAAATTACCA
1 TACCCTTGATTTAAAAAATTACCA
68748424 AAATACCCTC
Statistics
Matches: 109, Mismatches: 21, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
106 1 0.01
107 65 0.60
108 43 0.39
ACGTcount: A:0.32, C:0.22, G:0.07, T:0.39
Consensus pattern (108 bp):
TACCCTTGATTTAAAAAATTACCATTTTACCCTCAATTTACAGAATTACCAGTTTACCCTCAATT
TACAGAATTACCATTTTACCCTCGATTTATAAAATTACCAAAA
Found at i:68748420 original size:80 final size:80
Alignment explanation
Indices: 68748133--68748422 Score: 233
Period size: 81 Copynumber: 3.6 Consensus size: 80
68748123 TACTAAAATG
* * * * * * * *
68748133 CCCTCAATTTGTAAAATTACCAAAGTACCCTCGATTTACAGAATTACTGTTTTACCCTTAATTTA
1 CCCTCGATTTATAAAATTACCAAAATACCCTCAATTTAAAAAATTACCG-TTTACCCTCAATTTA
*
68748198 CA-AAGTTACCATTTTA
65 CAGAA-TTACCGTTTTA
* * *** * * * ** *
68748214 CCCTTGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTA
1 CCCTCGATTTATAAAATTACCAAAATACCCTCAATTTAAAAAATTAC-CGTTTACCCTCAATTTA
*
68748279 TAGAATTACCGTTTTA
65 CAGAATTACCGTTTTA
* **** * *
68748295 CCCTTGATTTATAAAATTACCGTTTTACCCTCAATTTACAGAATTACCGTTTACCCTCAATTTAC
1 CCCTCGATTTATAAAATTACCAAAATACCCTCAATTTAAAAAATTACCGTTTACCCTCAATTTAC
68748360 AGAATTACCGTTTTA
66 AGAATTACCGTTTTA
* * ***
68748375 CCCTCGATTT-TCAAAATTACTAAAATACCTTTGGTTTAAAAAATTACC
1 CCCTCGATTTAT-AAAATTACCAAAATACCCTCAATTTAAAAAATTACC
68748423 AAAATACCCT
Statistics
Matches: 174, Mismatches: 32, Indels: 7
0.82 0.15 0.03
Matches are distributed among these distances:
79 1 0.01
80 63 0.36
81 108 0.62
82 2 0.01
ACGTcount: A:0.32, C:0.22, G:0.08, T:0.39
Consensus pattern (80 bp):
CCCTCGATTTATAAAATTACCAAAATACCCTCAATTTAAAAAATTACCGTTTACCCTCAATTTAC
AGAATTACCGTTTTA
Found at i:68748432 original size:54 final size:53
Alignment explanation
Indices: 68748373--68748539 Score: 183
Period size: 54 Copynumber: 3.1 Consensus size: 53
68748363 ATTACCGTTT
* ** **
68748373 TACCCTCGATTTTCAAAATTACTAAAATACCTTTGGTTTAAAAAATTACCAAAA
1 TACCCTCGATTTT-AAAATTACAAAAATACCCCTGGTTTGTAAAATTACCAAAA
* * * *
68748427 TACCCTCGATTAGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAA
1 TACCCTCGATT-TTAAAATTACAAAAATACCCCTGGTTTGTAAAATTACCAAAA
* * *
68748481 TACCC-CTGGTTTGTAAAATTACAAAAAAACCCCTGGCTTGTAAAATTACCAAAA
1 TACCCTC-GATTT-TAAAATTACAAAAATACCCCTGGTTTGTAAAATTACCAAAA
68748535 TACCC
1 TACCC
68748540 CTGATTTGTG
Statistics
Matches: 95, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
53 1 0.01
54 93 0.98
55 1 0.01
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.29
Consensus pattern (53 bp):
TACCCTCGATTTTAAAATTACAAAAATACCCCTGGTTTGTAAAATTACCAAAA
Found at i:68748472 original size:81 final size:81
Alignment explanation
Indices: 68748387--68748555 Score: 225
Period size: 81 Copynumber: 2.1 Consensus size: 81
68748377 CTCGATTTTC
** * *
68748387 AAAATTACTAAAATACCTTTGGTTTAAAAAATTACCAAAATA-CCCTCGATTAGTAAAATTACCA
1 AAAATTACTAAAATACCCCTGGTTTAAAAAATTACAAAAAAACCCCTCGATT-GTAAAATTACCA
68748451 AAATACCCCT-AGTTTGT
65 AAATACCCCTGA-TTTGT
** * *
68748468 AAAATTACTAAAATACCCCTGGTTTGTAAAATTACAAAAAAACCCCTGGCTTGTAAAATTACCAA
1 AAAATTACTAAAATACCCCTGGTTTAAAAAATTACAAAAAAACCCCTCGATTGTAAAATTACCAA
68748533 AATACCCCTGATTTGT
66 AATACCCCTGATTTGT
*
68748549 GAAATTA
1 AAAATTA
68748556 TCGAAATACT
Statistics
Matches: 77, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
81 69 0.90
82 8 0.10
ACGTcount: A:0.43, C:0.19, G:0.09, T:0.30
Consensus pattern (81 bp):
AAAATTACTAAAATACCCCTGGTTTAAAAAATTACAAAAAAACCCCTCGATTGTAAAATTACCAA
AATACCCCTGATTTGT
Found at i:68748540 original size:54 final size:54
Alignment explanation
Indices: 68748414--68748555 Score: 196
Period size: 54 Copynumber: 2.6 Consensus size: 54
68748404 TTTGGTTTAA
* * * *
68748414 AAAATTACCAAAATA-CCCTCGATTAGTAAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCT-GATTTGTAAAATTACAAAAAAACCCCTAGCTTGT
* * *
68748468 AAAATTACTAAAATACCCCTGGTTTGTAAAATTACAAAAAAACCCCTGGCTTGT
1 AAAATTACCAAAATACCCCTGATTTGTAAAATTACAAAAAAACCCCTAGCTTGT
*
68748522 AAAATTACCAAAATACCCCTGATTTGTGAAATTA
1 AAAATTACCAAAATACCCCTGATTTGTAAAATTA
68748556 TCGAAATACT
Statistics
Matches: 77, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
54 73 0.95
55 4 0.05
ACGTcount: A:0.42, C:0.20, G:0.09, T:0.28
Consensus pattern (54 bp):
AAAATTACCAAAATACCCCTGATTTGTAAAATTACAAAAAAACCCCTAGCTTGT
Found at i:68748576 original size:54 final size:52
Alignment explanation
Indices: 68748414--68748594 Score: 186
Period size: 54 Copynumber: 3.4 Consensus size: 52
68748404 TTTGGTTTAA
*
68748414 AAAATTACCAAAATA-CCCTCGATTAGTAAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCT-GATTTGTAAAATTA-CAAAATACCCCTA-TTTGT
* * * **
68748468 AAAATTACTAAAATACCCCTGGTTTGTAAAATTACAAAAAAACCCCTGGCTTGT
1 AAAATTACCAAAATACCCCTGATTTGTAAAATTAC-AAAATACCCCT-ATTTGT
* * *
68748522 AAAATTACCAAAATACCCCTGATTTGTGAAATTATCGAAATACTCTCTATTTGT
1 AAAATTACCAAAATACCCCTGATTTGTAAAATTA-CAAAATAC-CCCTATTTGT
* *
68748576 AAAA-TATCGAAATACCCCT
1 AAAATTACCAAAATACCCCT
68748595 TTAGGGTAGA
Statistics
Matches: 106, Mismatches: 16, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
53 14 0.13
54 84 0.79
55 8 0.08
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (52 bp):
AAAATTACCAAAATACCCCTGATTTGTAAAATTACAAAATACCCCTATTTGT
Found at i:68748878 original size:25 final size:24
Alignment explanation
Indices: 68748840--68748931 Score: 139
Period size: 25 Copynumber: 3.7 Consensus size: 24
68748830 AGGAAGTGCT
*
68748840 AAAAGGGCTATGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTACC
68748864 GAAAAGGGCTTTGCCCCAGTTTACC
1 -AAAAGGGCTTTGCCCCAGTTTACC
*
68748889 AAAACGGGCTTTGCCCCAGTTTATCA
1 AAAA-GGGCTTTGCCCCAGTTTA-CC
68748915 AAAAGGGCTTTGCCCCA
1 AAAAGGGCTTTGCCCCA
68748932 ATTATTAAAA
Statistics
Matches: 63, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
24 4 0.06
25 54 0.86
26 5 0.08
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTACC
Found at i:68748958 original size:50 final size:49
Alignment explanation
Indices: 68748838--68748959 Score: 147
Period size: 50 Copynumber: 2.4 Consensus size: 49
68748828 GGAGGAAGTG
* *
68748838 CTAAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTTA
1 CTAAAAGGGCTATGCCCCAGTTTACCAAAAAGGGCTTTGCCCCAGATTA
* * *
68748887 CCAAAACGGGCTTTGCCCCAGTTTATCAAAAAGGGCTTTGCCCCA-ATTA
1 CTAAAA-GGGCTATGCCCCAGTTTACCAAAAAGGGCTTTGCCCCAGATTA
* *
68748936 TTAAAAGAGGCTAGGCCTCCAGTT
1 CTAAAAG-GGCTATGCC-CCAGTT
68748960 ATATGATAAA
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
48 1 0.02
49 19 0.31
50 41 0.67
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (49 bp):
CTAAAAGGGCTATGCCCCAGTTTACCAAAAAGGGCTTTGCCCCAGATTA
Found at i:68752301 original size:83 final size:83
Alignment explanation
Indices: 68752162--68752326 Score: 321
Period size: 83 Copynumber: 2.0 Consensus size: 83
68752152 TCAGCTACAC
*
68752162 ACTTTCGGATTATATTATCTGCATACTGTTTAAACAAAAACAGATCCTCCCAAATATAATATCGA
1 ACTTTCGGATTATATTATCTGCACACTGTTTAAACAAAAACAGATCCTCCCAAATATAATATCGA
68752227 CTATCATGAAGGAATTTA
66 CTATCATGAAGGAATTTA
68752245 ACTTTCGGATTATATTATCTGCACACTGTTTAAACAAAAACAGATCCTCCCAAATATAATATCGA
1 ACTTTCGGATTATATTATCTGCACACTGTTTAAACAAAAACAGATCCTCCCAAATATAATATCGA
68752310 CTATCATGAAGGAATTT
66 CTATCATGAAGGAATTT
68752327 TTTCCTTTGT
Statistics
Matches: 81, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
83 81 1.00
ACGTcount: A:0.38, C:0.19, G:0.11, T:0.32
Consensus pattern (83 bp):
ACTTTCGGATTATATTATCTGCACACTGTTTAAACAAAAACAGATCCTCCCAAATATAATATCGA
CTATCATGAAGGAATTTA
Found at i:68770276 original size:507 final size:506
Alignment explanation
Indices: 68769324--68770334 Score: 1677
Period size: 507 Copynumber: 2.0 Consensus size: 506
68769314 ATTCAGCCCA
* * *
68769324 ATTAGACTGGAGCCTCTCAATAATAGATCCATGGTTCCTAGATCAAGTTTGGGCTCTAACAACCC
1 ATTAGACCGGAGCCTCTCAATAACAGATCCATGGTTCCTAGATCAAGTTTGGGCTCCAACAACCC
* *
68769389 TTTGAAGAACCCTTAGCATGACTTGCGATACTGCATCATCACCATTATCATACCATTAGTCACTA
66 TTTGAAGAACCCTTAGCATGACTTGCGATACTGCATCATCACCATTATCATACCATTAGCCACCA
* * *
68769454 ATGGCAAATAAATCCTCTATGTAATCTACCTCAGGAATTGGGCTTTCATCCTAAGTGATAAGCAG
131 ATGGCAAATAAATCCTCTATGTAATCCACCTCAAGAATTGGGCTTTCATCCTAAGTGATAACCAG
* * *
68769519 CTTAACAGGAGCAACCCTATGCGGCCTACCTCTACCACGTCTACCTCGAGTACTCATAATGAATT
196 CTCAACAAGAGCAACCCTAGGCGGCCTACCTCTACCACGTCTACCTCGAGTACTCATAATGAATT
*
68769584 CCCAAAAATTTAAAGTCTAAAGTATATCTATAGTTTTCAAATAAAAGTTCAAGAATTAGTTATTT
261 CCCAAAAATTTAAAGTCTAAAGTATATCTATAGTTTTCAAATAAAAGTTCAAGAATTAATTATTT
* * * * *
68769649 TCTTAAGTGTTTATATTCTAAAGTTTACAGTTTCTAGTCTAATGTTTGACTACAGTTTTAAGAAA
326 TCTTAAGTGTTTATACTCTAAAGGTTACAATTTCTAGTCCAAAGTTTGACTACAGTTTTAAGAAA
*
68769714 TAACAATAAATAAGTTAGGATTGGCATCGGAGTCTCGAATTTAATTTCTTTGAAGAAAATCCTTT
391 TAACAATAAATAAGTCAGGATTGGCATCGGAGTCTCGAATTTAATTTCTTTGAAGAAAATCCTTT
68769779 TTCAAAAGTTTGTGGCTTGGTTTTTCCAAAAATACCCCATTTTTAAGACCC
456 TTCAAAAGTTTGTGGCTTGGTTTTTCCAAAAATACCCCATTTTTAAGACCC
*
68769830 ATTAGACCGGAGCCTCTCAATAACAGATCCATGGTTCCTAGATCAAGTTTGGGCTCCAACAACCT
1 ATTAGACCGGAGCCTCTCAATAACAGATCCATGGTTCCTAGATCAAGTTTGGGCTCCAACAACCC
68769895 TTTGAAGAACCCTTAGCATCG-CTTGCGATACTGCATCATCACCATTATCATACCATCTA-CCAC
66 TTTGAAGAACCCTTAGCAT-GACTTGCGATACTGCATCATCACCATTATCATACCAT-TAGCCAC
* * *
68769958 CAATGGTAGATAAATCCTCTATGTAATCCACCTCAAGAATTGGGCTTTCATTCTAAGTGATAATC
129 CAATGGCAAATAAATCCTCTATGTAATCCACCTCAAGAATTGGGCTTTCATCCTAAGTGATAA-C
* * *
68770023 CGGCTCAACAAGAGCAACCCTAGGCGGCCTACCTCTACCACGTCTGCCTCGGGTACTCATAATGA
193 CAGCTCAACAAGAGCAACCCTAGGCGGCCTACCTCTACCACGTCTACCTCGAGTACTCATAATGA
* *
68770088 ATTCCCAAAAATTTAGTA-TCTAGAGTATATCTATAGTTTTCAAATAAAAGTTCAAGAATTAATT
258 ATTCCCAAAAATTTA-AAGTCTAAAGTATATCTATAGTTTTCAAATAAAAGTTCAAGAATTAATT
* * *
68770152 ATTTTCTTGAGTGTTTATACTCTAAAGGTTACAATTTCTAGTCCAAAGTTTGACTATAGTTTTCA
322 ATTTTCTTAAGTGTTTATACTCTAAAGGTTACAATTTCTAGTCCAAAGTTTGACTACAGTTTTAA
* *
68770217 GAAATAATAGTAAATAAGTCAGGATTGGCATCGGAGTCTCGAATTTAATTTCTTTGAAGAAAATC
387 GAAATAACAATAAATAAGTCAGGATTGGCATCGGAGTCTCGAATTTAATTTCTTTGAAGAAAATC
68770282 CTTTTTCAAAAGTTTGTGGCTTGGTTTTTCCAAAAATACCCCATTTTTAAGAC
452 CTTTTTCAAAAGTTTGTGGCTTGGTTTTTCCAAAAATACCCCATTTTTAAGAC
68770335 ATTCACGTAG
Statistics
Matches: 469, Mismatches: 32, Indels: 7
0.92 0.06 0.01
Matches are distributed among these distances:
506 175 0.37
507 293 0.62
508 1 0.00
ACGTcount: A:0.32, C:0.20, G:0.15, T:0.33
Consensus pattern (506 bp):
ATTAGACCGGAGCCTCTCAATAACAGATCCATGGTTCCTAGATCAAGTTTGGGCTCCAACAACCC
TTTGAAGAACCCTTAGCATGACTTGCGATACTGCATCATCACCATTATCATACCATTAGCCACCA
ATGGCAAATAAATCCTCTATGTAATCCACCTCAAGAATTGGGCTTTCATCCTAAGTGATAACCAG
CTCAACAAGAGCAACCCTAGGCGGCCTACCTCTACCACGTCTACCTCGAGTACTCATAATGAATT
CCCAAAAATTTAAAGTCTAAAGTATATCTATAGTTTTCAAATAAAAGTTCAAGAATTAATTATTT
TCTTAAGTGTTTATACTCTAAAGGTTACAATTTCTAGTCCAAAGTTTGACTACAGTTTTAAGAAA
TAACAATAAATAAGTCAGGATTGGCATCGGAGTCTCGAATTTAATTTCTTTGAAGAAAATCCTTT
TTCAAAAGTTTGTGGCTTGGTTTTTCCAAAAATACCCCATTTTTAAGACCC
Found at i:68773167 original size:37 final size:37
Alignment explanation
Indices: 68773126--68773204 Score: 97
Period size: 37 Copynumber: 2.1 Consensus size: 37
68773116 TAAGTTTGAC
*
68773126 ACCCAATGTCTCATCAATTAAACCGA-AGTAAATTGGA
1 ACCCAATGTCTCATCAATTAAA-CGAGAGCAAATTGGA
* ** *
68773163 ACCCAGTGTCTCATCGGTTAAACTAGAGCAAATTGGA
1 ACCCAATGTCTCATCAATTAAACGAGAGCAAATTGGA
68773200 ACCCA
1 ACCCA
68773205 TTGCCTCACC
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
36 2 0.06
37 34 0.94
ACGTcount: A:0.37, C:0.24, G:0.16, T:0.23
Consensus pattern (37 bp):
ACCCAATGTCTCATCAATTAAACGAGAGCAAATTGGA
Found at i:68773749 original size:15 final size:17
Alignment explanation
Indices: 68773729--68773761 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
68773719 TAATATTATA
68773729 ATAAATT-T-TTATTTG
1 ATAAATTATGTTATTTG
68773744 ATAAATTATGTTATTTG
1 ATAAATTATGTTATTTG
68773761 A
1 A
68773762 AATAGTAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
16 1 0.06
17 8 0.50
ACGTcount: A:0.36, C:0.00, G:0.09, T:0.55
Consensus pattern (17 bp):
ATAAATTATGTTATTTG
Found at i:68782818 original size:48 final size:47
Alignment explanation
Indices: 68782752--68782921 Score: 166
Period size: 48 Copynumber: 3.6 Consensus size: 47
68782742 AAGCTGACGC
* * * * *
68782752 CATGTCCCAAATAGGTCTTACACTAGCTTGTGTATCGCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTT-AGTATCTCGAGGCCGATG
* * * * *
68782800 CATGTCCTAGACATGTCTTACACTAGCTCTCG--TCTCAATGCCAATG
1 CATGTCCCAGACATGTCTTACACTAGCT-TAGTATCTCGAGGCCGATG
* * *
68782846 CATGTCCCAGACATGTCTTACACTAGCTTAAATATCTCGAGACTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTT-AGTATCTCGAGGCCGATG
68782894 CATG-CACCAGACATGTCTTACACTAGCT
1 CATGTC-CCAGACATGTCTTACACTAGCT
68782922 CACATATCAC
Statistics
Matches: 100, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
45 1 0.01
46 37 0.37
47 1 0.01
48 60 0.60
49 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTAGCTTAGTATCTCGAGGCCGATG
Found at i:68782869 original size:94 final size:94
Alignment explanation
Indices: 68782752--68782922 Score: 236
Period size: 94 Copynumber: 1.8 Consensus size: 94
68782742 AAGCTGACGC
* *** * *
68782752 CATGTCCCAAATAGGTCTTACACTAGCTTGTGTATCGCGAGGCCGATGCATGTC-CTAGACATGT
1 CATGTCCCAAACAGGTCTTACACTAGCTTAAATATCGCGAGACCGATGCATG-CACCAGACATGT
68782816 CTTACACTAGCTCTCGTCTCAATGCCAATG
65 CTTACACTAGCTCTCGTCTCAATGCCAATG
* * * *
68782846 CATGTCCCAGACATGTCTTACACTAGCTTAAATATCTCGAGACTGATGCATGCACCAGACATGTC
1 CATGTCCCAAACAGGTCTTACACTAGCTTAAATATCGCGAGACCGATGCATGCACCAGACATGTC
68782911 TTACACTAGCTC
66 TTACACTAGCTC
68782923 ACATATCACC
Statistics
Matches: 66, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
93 1 0.02
94 65 0.98
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (94 bp):
CATGTCCCAAACAGGTCTTACACTAGCTTAAATATCGCGAGACCGATGCATGCACCAGACATGTC
TTACACTAGCTCTCGTCTCAATGCCAATG
Found at i:68797362 original size:48 final size:48
Alignment explanation
Indices: 68797288--68797611 Score: 241
Period size: 48 Copynumber: 6.7 Consensus size: 48
68797278 TGATCTATGT
68797288 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-CAACATGAGA
1 GCCAGTGTAAGACCATGTCT-GGACATGGCATCGGCCATCAACATGAGA
* * ** * *
68797336 GCCAGTGTAAAACCATGTCTGTGACATGGCATC-GTCATTGATATGTGCA
1 GCCAGTGTAAGACCATGTCTG-GACATGGCATCGGCCATCAACATGAG-A
* *
68797385 -CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-CAACATGAAA
1 GCCAGTGTAAGACCATGTCT-GGACATGGCATCGGCCATCAACATGAGA
* ** * * *
68797432 GCCAATGTAAGACCATGTCTAGGACATGGCATCGG-CATTGATATGTGC
1 GCCAGTGTAAGACCATGTCT-GGACATGGCATCGGCCATCAACATGAGA
* * * * *
68797480 GCTAGTGTAAAACCATGTCTAGGACATGGCATCGACAATGAGAC--GAGA
1 GCCAGTGTAAGACCATGTCT-GGACATGGCATCGGCCATCA-ACATGAGA
* * ** * *
68797528 GCTAGTGTACGACCATGTCTAGGACATGGCATCAACC-TCGACATGTGA
1 GCCAGTGTAAGACCATGTCT-GGACATGGCATCGGCCATCAACATGAGA
* * * * *
68797576 GGCAATGTAAGACCATGTTTTGAACATAGCATCGGC
1 GCCAGTGTAAGACCATG-TCTGGACATGGCATCGGC
68797612 AATTCACCCT
Statistics
Matches: 215, Mismatches: 49, Indels: 24
0.75 0.17 0.08
Matches are distributed among these distances:
46 2 0.01
47 8 0.04
48 195 0.91
49 9 0.04
50 1 0.00
ACGTcount: A:0.30, C:0.22, G:0.26, T:0.22
Consensus pattern (48 bp):
GCCAGTGTAAGACCATGTCTGGACATGGCATCGGCCATCAACATGAGA
Found at i:68797458 original size:96 final size:95
Alignment explanation
Indices: 68797283--68797560 Score: 389
Period size: 96 Copynumber: 2.9 Consensus size: 95
68797273 TTGGGTGATC
*
68797283 TATGTGCC-AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAACATGAGAGCCAGTGTAAA
1 TATGTGCCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAACATGAGAGCCAGTGTAAG
*
68797347 ACCATGTCT-GTGACATGGCATCGTCATTGA
66 ACCATGTCTAG-GACATGGCATCGGCATTGA
* *
68797377 TATGTGCACTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAACATGAAAGCCAATGTAA
1 TATGTGC-CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAACATGAGAGCCAGTGTAA
68797442 GACCATGTCTAGGACATGGCATCGGCATTGA
65 GACCATGTCTAGGACATGGCATCGGCATTGA
* * * * ** * * * *
68797473 TATGTGCGCTAGTGTAAAACCATGTCTAGGACATGGCATCGACAATGAGACGAGAGCTAGTGTAC
1 TATGTGC-CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAACATGAGAGCCAGTGTAA
68797538 GACCATGTCTAGGACATGGCATC
65 GACCATGTCTAGGACATGGCATC
68797561 AACCTCGACA
Statistics
Matches: 164, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
94 7 0.04
95 1 0.01
96 155 0.95
97 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.27, T:0.23
Consensus pattern (95 bp):
TATGTGCCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAACATGAGAGCCAGTGTAAG
ACCATGTCTAGGACATGGCATCGGCATTGA
Found at i:68797553 original size:144 final size:143
Alignment explanation
Indices: 68797288--68797612 Score: 366
Period size: 144 Copynumber: 2.3 Consensus size: 143
68797278 TGATCTATGT
* *
68797288 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAACATGAGAGCCAGTGTAAAACCATG
1 GCCAATGTAAGACCATGTCTAGGACATGGCATCGG-CACAACATGAGAGCCAGTGTAAAACCATG
* * * * * * *
68797353 TCTGTGACATGGCATCGTCATTGATATGTGCACTAGTGTAAGACCATGTCTGGGACATGGCATCG
65 TCTGTGACATGGCATCGACAATGAGACGAGCACTAGTGTAAGACCATGTCTAGGACATGGCATCA
*
68797418 GCCACAACATGAAA
130 ACCACAACATGAAA
** * * * *
68797432 GCCAATGTAAGACCATGTCTAGGACATGGCATCGGCATTGATATGTGCGCTAGTGTAAAACCATG
1 GCCAATGTAAGACCATGTCTAGGACATGGCATCGGCA-CAACATGAGAGCCAGTGTAAAACCATG
*
68797497 TCTAG-GACATGGCATCGACAATGAGACGAG-AGCTAGTGTACGACCATGTCTAGGACATGGCAT
65 TCT-GTGACATGGCATCGACAATGAGACGAGCA-CTAGTGTAAGACCATGTCTAGGACATGGCAT
* * **
68797560 CAACCTCGACATGTGA
128 CAACCACAACATGAAA
* * * * *
68797576 GGCAATGTAAGACCATGTTTTGAACATAGCATCGGCA
1 GCCAATGTAAGACCATGTCTAGGACATGGCATCGGCA
68797613 ATTCACCCTC
Statistics
Matches: 152, Mismatches: 26, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
143 3 0.02
144 148 0.97
145 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.26, T:0.22
Consensus pattern (143 bp):
GCCAATGTAAGACCATGTCTAGGACATGGCATCGGCACAACATGAGAGCCAGTGTAAAACCATGT
CTGTGACATGGCATCGACAATGAGACGAGCACTAGTGTAAGACCATGTCTAGGACATGGCATCAA
CCACAACATGAAA
Found at i:68800351 original size:20 final size:20
Alignment explanation
Indices: 68800309--68800351 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
68800299 CGTGGATGTA
*
68800309 TATGCTAGAAATTAGAAAGT
1 TATGCTAGAAAATAGAAAGT
*
68800329 TATGGTAGAAAAT-GAAAGAT
1 TATGCTAGAAAATAGAAAG-T
68800349 TAT
1 TAT
68800352 TGATAGATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 5 0.25
20 15 0.75
ACGTcount: A:0.47, C:0.02, G:0.21, T:0.30
Consensus pattern (20 bp):
TATGCTAGAAAATAGAAAGT
Found at i:68808855 original size:19 final size:19
Alignment explanation
Indices: 68808831--68808869 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
68808821 TTGTCAAATG
68808831 TCAACTTACCAAAGTCGTT
1 TCAACTTACCAAAGTCGTT
68808850 TCAACTTACCAAAGTCGTT
1 TCAACTTACCAAAGTCGTT
68808869 T
1 T
68808870 TGGGCCGAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.31, C:0.26, G:0.10, T:0.33
Consensus pattern (19 bp):
TCAACTTACCAAAGTCGTT
Found at i:68812939 original size:42 final size:42
Alignment explanation
Indices: 68812880--68812974 Score: 129
Period size: 42 Copynumber: 2.3 Consensus size: 42
68812870 CTCATTCTCA
* * **
68812880 CACACTAAGTGCCATATATATAGCCGAAGCTAT-TCCGATTCG
1 CACACTAAGTGACATATATATAGCCAAAGCTATCT-CGAAACG
*
68812922 CACACTAAGTGATATATATATAGCCAAAGCTATCTCGAAACG
1 CACACTAAGTGACATATATATAGCCAAAGCTATCTCGAAACG
68812964 CACACTAAGTG
1 CACACTAAGTG
68812975 CCAAACATAG
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
42 46 0.98
43 1 0.02
ACGTcount: A:0.36, C:0.24, G:0.16, T:0.24
Consensus pattern (42 bp):
CACACTAAGTGACATATATATAGCCAAAGCTATCTCGAAACG
Found at i:68818209 original size:46 final size:46
Alignment explanation
Indices: 68818142--68818234 Score: 152
Period size: 46 Copynumber: 2.0 Consensus size: 46
68818132 ATGCAAACAT
68818142 AGTTAGTTTACTAAGTTAAAATGTCAATAGATGTAGAGGAAATGGA
1 AGTTAGTTTACTAAGTTAAAATGTCAATAGATGTAGAGGAAATGGA
* *
68818188 AGTTA-TTTCACTAAGTTAAAATTTCAATAGATGTAGAGGCAATGGA
1 AGTTAGTTT-ACTAAGTTAAAATGTCAATAGATGTAGAGGAAATGGA
68818234 A
1 A
68818235 ATGAACATAT
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
45 3 0.07
46 41 0.93
ACGTcount: A:0.41, C:0.06, G:0.22, T:0.31
Consensus pattern (46 bp):
AGTTAGTTTACTAAGTTAAAATGTCAATAGATGTAGAGGAAATGGA
Found at i:68820598 original size:94 final size:93
Alignment explanation
Indices: 68820410--68820625 Score: 249
Period size: 94 Copynumber: 2.3 Consensus size: 93
68820400 TTATTTGTGT
* * *
68820410 GCTAGTGTAAGACATGTCTGGAACATGCATCGTCCACATTATGAGAGCTAGTGTAAGACCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAGA-CTAGTGTAAGACCATGTC
* * **
68820475 TGGGACATGGCATTGGCATTGAGACGAGA
65 TGGGACATAGCATCGGCACGGAGACGAGA
* *
68820504 GCTAGTGTAAGACATTTCTGGGACATGCATCGGCCTCGA-GATGTA-A-TAGTGTAAGACCATGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATGATG-AGACTAGTGTAAGACCATGT
* *
68820566 CTGGGACATAGCATCGGCACGGATATGTGAGA
64 CTGGGACATAGCATCGGCACGGAGA--CGAGA
*
68820598 GCCAGTGTAAGACCATGTCTGGGACATG
1 GCTAGTGTAAGA-CATGTCTGGGACATG
68820626 GCGTCAGCCT
Statistics
Matches: 104, Mismatches: 13, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
92 36 0.35
94 52 0.50
95 16 0.15
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.24
Consensus pattern (93 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAGACTAGTGTAAGACCATGTCT
GGGACATAGCATCGGCACGGAGACGAGA
Found at i:68820719 original size:47 final size:48
Alignment explanation
Indices: 68820551--68820727 Score: 162
Period size: 47 Copynumber: 3.6 Consensus size: 48
68820541 GAGATGTAAT
* * * * **
68820551 AGTGTAAGACCATGTCTGGGACATAGCATCGGCACGGATATGTGA-GAGCC
1 AGTGTAAGACCATGTCTGAGACATGGCATCGACTC-GAT-T-CAATGAGCC
* * *
68820601 AGTGTAAGACCATGTCTGGGACATGGCGTCAGCCTCGATTTCAAT-AGCC
1 AGTGTAAGACCATGTCTGAGACATGGCATC-GACTCGA-TTCAATGAGCC
* * **
68820650 AGTGTAAGACCATGTCTAAGACATGGCATCGACTTGA-TGGATGAGCC
1 AGTGTAAGACCATGTCTGAGACATGGCATCGACTCGATTCAATGAGCC
*
68820697 AGTATAAGACCATGTCTGAGACATGGCATCG
1 AGTGTAAGACCATGTCTGAGACATGGCATCG
68820728 GCATTATACC
Statistics
Matches: 108, Mismatches: 15, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
46 3 0.03
47 33 0.31
48 5 0.05
49 32 0.30
50 31 0.29
51 4 0.04
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGAGACATGGCATCGACTCGATTCAATGAGCC
Found at i:68825701 original size:96 final size:95
Alignment explanation
Indices: 68825583--68825780 Score: 310
Period size: 96 Copynumber: 2.1 Consensus size: 95
68825573 CTTACTTTCT
*
68825583 TCTCTAGTTAGATATTTAATTGGACATTGGAAACCCTTATGATCTTTTGAACTACACCAATAACA
1 TCTCTATTTAGATATTTAATTGGACATTGGAAACCCTTATGATCTTTTGAACT-CACCAATAACA
* * * *
68825648 TTGCACAAAAGGTGATATCTCAATTGTATTC
65 GTGCACAAAAGATGATAGCTCAATCGTATTC
* *
68825679 TCTCTATTTGGATATTTAATTGGACATTGGAAGCCCTTATGATCTTTTGAACTCACCAATAACAG
1 TCTCTATTTAGATATTTAATTGGACATTGGAAACCCTTATGATCTTTTGAACTCACCAATAACAG
68825744 TGCACAAAAGATGATAGCTCAATCGTATTC
66 TGCACAAAAGATGATAGCTCAATCGTATTC
68825774 -CTC-ATTT
1 TCTCTATTT
68825781 CATTTGGCAA
Statistics
Matches: 95, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
93 4 0.04
94 3 0.03
95 38 0.40
96 50 0.53
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (95 bp):
TCTCTATTTAGATATTTAATTGGACATTGGAAACCCTTATGATCTTTTGAACTCACCAATAACAG
TGCACAAAAGATGATAGCTCAATCGTATTC
Found at i:68829619 original size:14 final size:13
Alignment explanation
Indices: 68829573--68829621 Score: 55
Period size: 13 Copynumber: 3.6 Consensus size: 13
68829563 CGTTTGAATA
68829573 TCTTAATTATGTG
1 TCTTAATTATGTG
68829586 TCTTAATTAT-TG
1 TCTTAATTATGTG
*
68829598 CACTTTAAATTATGTG
1 -TC-TT-AATTATGTG
68829614 TCTTAATT
1 TCTTAATT
68829622 CTGACATAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
12 2 0.07
13 15 0.50
14 4 0.13
15 7 0.23
16 2 0.07
ACGTcount: A:0.27, C:0.10, G:0.10, T:0.53
Consensus pattern (13 bp):
TCTTAATTATGTG
Found at i:68830858 original size:19 final size:20
Alignment explanation
Indices: 68830831--68830869 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
68830821 TCGAAATACA
*
68830831 AAGAGAAAAAGAAAA-AAAG
1 AAGAAAAAAAGAAAAGAAAG
68830850 AAGAAAAAAAGAAAAGAAAG
1 AAGAAAAAAAGAAAAGAAAG
68830870 GGCTAGTTCG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (20 bp):
AAGAAAAAAAGAAAAGAAAG
Found at i:68832927 original size:12 final size:11
Alignment explanation
Indices: 68832904--68832944 Score: 55
Period size: 12 Copynumber: 3.5 Consensus size: 11
68832894 AAAAAATAAG
68832904 AAAGAAAAAGA
1 AAAGAAAAAGA
68832915 AAAGAAAATAGA
1 AAAGAAAA-AGA
*
68832927 AAAGAAGAAAGG
1 AAAGAA-AAAGA
68832939 AAAGAA
1 AAAGAA
68832945 TGAGCCAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
11 8 0.30
12 17 0.63
13 2 0.07
ACGTcount: A:0.76, C:0.00, G:0.22, T:0.02
Consensus pattern (11 bp):
AAAGAAAAAGA
Found at i:68832975 original size:14 final size:14
Alignment explanation
Indices: 68832958--68833004 Score: 51
Period size: 14 Copynumber: 3.2 Consensus size: 14
68832948 GCCAAAAATA
68832958 AGAGAGAAAAACAG
1 AGAGAGAAAAACAG
68832972 AGAGAGATAAAAACACG
1 AGAGAG--AAAAACA-G
*
68832989 AGAG-GAAAAAGAG
1 AGAGAGAAAAACAG
68833002 AGA
1 AGA
68833005 AAATGAGAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
13 4 0.14
14 12 0.41
16 8 0.28
17 5 0.17
ACGTcount: A:0.62, C:0.06, G:0.30, T:0.02
Consensus pattern (14 bp):
AGAGAGAAAAACAG
Found at i:68832983 original size:16 final size:17
Alignment explanation
Indices: 68832958--68832992 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
68832948 GCCAAAAATA
68832958 AGAGAGAAAAACA-GAG
1 AGAGAGAAAAACACGAG
*
68832974 AGAGATAAAAACACGAG
1 AGAGAGAAAAACACGAG
68832991 AG
1 AG
68832993 GAAAAAGAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.60, C:0.09, G:0.29, T:0.03
Consensus pattern (17 bp):
AGAGAGAAAAACACGAG
Found at i:68837432 original size:27 final size:27
Alignment explanation
Indices: 68837401--68837578 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
68837391 TAAATTGTAC
68837401 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
68837428 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
68837454 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
68837482 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
68837510 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
68837537 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
68837564 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
68837579 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:68837515 original size:82 final size:81
Alignment explanation
Indices: 68837402--68837557 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
68837392 AAATTGTACA
* *
68837402 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
68837466 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
68837483 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
68837548 TGCGAGTTGA
65 TGCGAATTGA
68837558 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:68837569 original size:82 final size:81
Alignment explanation
Indices: 68837398--68837578 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
68837388 GATTAAATTG
* *
68837398 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
68837463 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
68837479 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
68837543 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
68837561 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
68837579 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:68854603 original size:22 final size:21
Alignment explanation
Indices: 68854573--68854619 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
68854563 TACAAATTAA
68854573 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
68854595 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
68854616 ATCT
1 ATCT
68854620 AAGATTGCGT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:68854625 original size:19 final size:19
Alignment explanation
Indices: 68854590--68854689 Score: 146
Period size: 19 Copynumber: 5.2 Consensus size: 19
68854580 AGATTACAAG
68854590 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
*
68854611 ATCATATCTAAGATTGCGT
1 ATCATATCTAAGATTGCAT
*
68854630 ATCATATCTAAGATTGCGT
1 ATCATATCTAAGATTGCAT
68854649 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
* *
68854668 ATAATATCTAAGATTGTAT
1 ATCATATCTAAGATTGCAT
68854687 ATC
1 ATC
68854690 CTTAAAGATT
Statistics
Matches: 74, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
19 65 0.88
20 1 0.01
21 8 0.11
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:68855239 original size:87 final size:85
Alignment explanation
Indices: 68855091--68855420 Score: 219
Period size: 87 Copynumber: 3.8 Consensus size: 85
68855081 GTTTTCTGAC
* * * ** *
68855091 AATACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGT-AAACA-CGTGAAAGCCAAATCTGC
1 AATACA-AGATGACAAATCATCTTGGATCTGCTTCA--GTAAAACATC-TGAAGGTTAGATCTGC
68855154 TATGTCTTCGATTTGCTCCTTGTG
62 TATGTCTTCGATTTGCTCCTTGTG
*
68855178 AATACAAGGATGACAAATCATCTTGGATTTGCTTCAGTAAAATCATCTGAAGGTTAGATCTGCTA
1 AATACAA-GATGACAAATCATCTTGGATCTGCTTCAGTAAAA-CATCTGAAGGTTAGATCTGCTA
* *
68855243 TG---T--ATCTGCT-CTCCGTCG
64 TGTCTTCGATTTGCTCCT-TGT-G
** * * ** * * * *
68855261 AAATGGAA-ATGTCAGATCTGTTATCTTGGATCTGCTTTGGTGTAAGAACATCCGAAAGTCAAAT
1 -AATACAAGATGACAAATC----ATCTTGGATCTGC-TT-CAGTAA-AACATCTGAAGGTTAGAT
* *
68855325 CTGCTATGTCTTCGATTTGTTCCTTGTA
58 CTGCTATGTCTTCGATTTGCTCCTTGTG
* * *
68855353 AATACAAGAATGCCAAATCATCTTGGATCTACTTCAGTATAAACATCTGAAGGTTAGACCTGCTA
1 AATACAAG-ATGACAAATCATCTTGGATCTGCTTCAGTA-AAACATCTGAAGGTTAGATCTGCTA
68855418 TGT
64 TGT
68855421 ACCTGCTCTC
Statistics
Matches: 184, Mismatches: 36, Indels: 46
0.69 0.14 0.17
Matches are distributed among these distances:
81 2 0.01
82 16 0.09
83 1 0.01
84 6 0.03
85 2 0.01
86 16 0.09
87 76 0.41
88 28 0.15
89 14 0.08
91 6 0.03
93 15 0.08
94 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.32
Consensus pattern (85 bp):
AATACAAGATGACAAATCATCTTGGATCTGCTTCAGTAAAACATCTGAAGGTTAGATCTGCTATG
TCTTCGATTTGCTCCTTGTG
Found at i:68855436 original size:175 final size:175
Alignment explanation
Indices: 68855139--68855704 Score: 884
Period size: 175 Copynumber: 3.2 Consensus size: 175
68855129 GTAAACACGT
* * * * * *
68855139 GAAAGCCAAATCTGCTATGTCTTCGATTTGCTCCTTGTGAATACAAGGATGACAAATCATCTTGG
1 GAAAGTCAAATCTACTATGTCTTCGATTTGTTCCTTGTAAATACAAGAATGCCAAATCATCTTGG
* * *
68855204 ATTTGCTTCAGTA-AAATCATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGA
66 ATCTGCTTCAGTATAAA-CATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGA
* *
68855268 AATG-TCAGATCTGTTATCTTGGATCTGCTTTGGTGTAAGAACATCC
130 GATGCT-AGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATCC
*
68855314 GAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAATACAAGAATGCCAAATCATCTTGG
1 GAAAGTCAAATCTACTATGTCTTCGATTTGTTCCTTGTAAATACAAGAATGCCAAATCATCTTGG
*
68855379 ATCTACTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGAG
66 ATCTGCTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGAG
*
68855444 ATGCTAGATCTGTTATCTTAGATCTGCTTTGGTGTGAGAACATCC
131 ATGCTAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATCC
* * * * *
68855489 GAAAGTAAAATTTACTATGTCTTTGATTTGTTCCTTGTAAACACAAGAATGCAAAATCATCTTGG
1 GAAAGTCAAATCTACTATGTCTTCGATTTGTTCCTTGTAAATACAAGAATGCCAAATCATCTTGG
68855554 ATCTGCTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGAG
66 ATCTGCTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGAG
*
68855619 ATGCTAGATCTGTTATCTTGGATCTACTTTGGTGTGAGAACATCC
131 ATGCTAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATCC
* * * *
68855664 GAAAATCAGATCTACTATGTCTTTGATTTGTTCCCTGTAAA
1 GAAAGTCAAATCTACTATGTCTTCGATTTGTTCCTTGTAAA
68855705 CACAGGGACA
Statistics
Matches: 363, Mismatches: 26, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
175 359 0.99
176 4 0.01
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (175 bp):
GAAAGTCAAATCTACTATGTCTTCGATTTGTTCCTTGTAAATACAAGAATGCCAAATCATCTTGG
ATCTGCTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGAG
ATGCTAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATCC
Found at i:68855856 original size:44 final size:44
Alignment explanation
Indices: 68855683--68855987 Score: 226
Period size: 44 Copynumber: 6.9 Consensus size: 44
68855673 ATCTACTATG
* * * ** *
68855683 TCTTTGATTTGTTCCCTGTAAACACAGGGACACCAAATCTACTA
1 TCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTA
* * ** ***
68855727 TCTTC-AACTTGTTCCTTATAAACACAGGGATGCCATGT-TAAAA
1 TCTTCGATC-TGTTCCCTATAAACACAGGGATGCCAAATCTGCTA
* * * * * ** *
68855770 TCTTTGATCTGTTTCGCTGTAAGCACAGGAATGTTAGATCTGCTA
1 TCTTCGATCTG-TTCCCTATAAACACAGGGATGCCAAATCTGCTA
68855815 TCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTA
1 TCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTA
* * **
68855859 TCTTC-AACTTGTTCCCTATAAACACAAGGATGCC--ATGCTGAAA
1 TCTTCGATC-TGTTCCCTATAAACACAGGGATGCCAAAT-CTGCTA
* * * * *
68855902 TCTTCGATCTGCTTCGCTGTAAGCACA-GGAGTGTCAGATCTGCTA
1 TCTTCGATCTG-TTCCCTATAAACACAGGGA-TGCCAAATCTGCTA
*
68855947 TCTTTGATCTGTTTCCCTATAAACACAGGGATGCCAAATCT
1 TCTTCGATCTG-TTCCCTATAAACACAGGGATGCCAAATCT
68855988 TGTTTTTTTG
Statistics
Matches: 198, Mismatches: 51, Indels: 23
0.73 0.19 0.08
Matches are distributed among these distances:
42 2 0.01
43 26 0.13
44 119 0.60
45 46 0.23
46 5 0.03
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (44 bp):
TCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTA
Found at i:68855929 original size:132 final size:132
Alignment explanation
Indices: 68855669--68855987 Score: 476
Period size: 132 Copynumber: 2.4 Consensus size: 132
68855659 CATCCGAAAA
* * * **
68855669 TCAGATCTACTATGTCTTTGATTTGTTCCCTGTAAACACAGGGACACCAAATCTACTATCTTCAA
1 TCAGATCTGCTA--TCTTTGATCTGTTCCCTATAAACACAGGGATGCCAAATCTACTATCTTCAA
* * * * *
68855734 CTTGTTCCTTATAAACACAGGGATGCCATGTTAAAATCTTTGATCTGTTTCGCTGTAAGCACAGG
64 CTTGTTCCCTATAAACACAAGGATGCCATGCTAAAATCTTCGATCTGCTTCGCTGTAAGCACAGG
68855799 AATG
129 AATG
* * *
68855803 TTAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACT
1 TCAGATCTGCTATCTTTGATCTGTTCCCTATAAACACAGGGATGCCAAATCTACTATCTTCAACT
* *
68855868 TGTTCCCTATAAACACAAGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAG
66 TGTTCCCTATAAACACAAGGATGCCATGCTAAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAA
68855933 TG
131 TG
68855935 TCAGATCTGCTATCTTTGATCTGTTTCCCTATAAACACAGGGATGCCAAATCT
1 TCAGATCTGCTATCTTTGATCTG-TTCCCTATAAACACAGGGATGCCAAATCT
68855988 TGTTTTTTTG
Statistics
Matches: 167, Mismatches: 17, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
132 128 0.77
133 29 0.17
134 10 0.06
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (132 bp):
TCAGATCTGCTATCTTTGATCTGTTCCCTATAAACACAGGGATGCCAAATCTACTATCTTCAACT
TGTTCCCTATAAACACAAGGATGCCATGCTAAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAA
TG
Found at i:68858184 original size:6 final size:6
Alignment explanation
Indices: 68858173--68858201 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
68858163 GATATGATCT
68858173 TTTTTA TTTTTA TTTTTA TTTTTA TTTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTT
68858202 GAAATGGATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (6 bp):
TTTTTA
Found at i:68863501 original size:19 final size:19
Alignment explanation
Indices: 68863452--68863520 Score: 93
Period size: 19 Copynumber: 3.5 Consensus size: 19
68863442 AAATTAAATC
* *
68863452 TCTAAGATTACAAGATCATA
1 TCTAAGATTGC-ATATCATA
68863472 TCTTCAAGATTGCATATCATA
1 TC-T-AAGATTGCATATCATA
68863493 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
68863512 TCTAAGATT
1 TCTAAGATT
68863521 ATATATCCTT
Statistics
Matches: 45, Mismatches: 2, Indels: 5
0.87 0.04 0.10
Matches are distributed among these distances:
19 25 0.56
20 3 0.07
21 10 0.22
22 7 0.16
ACGTcount: A:0.38, C:0.16, G:0.10, T:0.36
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:68876052 original size:48 final size:48
Alignment explanation
Indices: 68875981--68876366 Score: 673
Period size: 48 Copynumber: 7.9 Consensus size: 48
68875971 CAAGATAAAT
68875981 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
68876029 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
68876077 ATATGTATATATGGTAAAGCCGAATGGCTAATGTGAAATATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTG--A-A-ATATGTATGAG
68876129 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
68876177 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
68876225 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGCATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
68876273 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAG
*
68876323 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
68876367 GGCGATGTGT
Statistics
Matches: 323, Mismatches: 9, Indels: 12
0.94 0.03 0.03
Matches are distributed among these distances:
48 228 0.71
49 5 0.02
50 45 0.14
51 1 0.00
52 44 0.14
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:68876315 original size:196 final size:194
Alignment explanation
Indices: 68875981--68876366 Score: 727
Period size: 196 Copynumber: 2.0 Consensus size: 194
68875971 CAAGATAAAT
68875981 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
*
68876046 AGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATATGGTAAAGCCGAATGGCTAATGT
66 AGCCGAATGGCTAATGTGAAATATGCATGAGATATGTATATATGGTAAAGCCGAATGGCTAATGT
68876111 GAAATATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGA
131 G-AA-ATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGA
68876176 G
194 G
68876177 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
*
68876242 AGCCGAATGGCTAATGTGAAATATGCATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGT
66 AGCCGAATGGCTAATGTGAAATATGCATGAGATATGTATATATGGTAAAGCCGAATGGCTAATGT
*
68876307 GAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
131 GAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
68876367 GGCGATGTGT
Statistics
Matches: 187, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
194 56 0.30
195 2 0.01
196 129 0.69
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.31
Consensus pattern (194 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
AGCCGAATGGCTAATGTGAAATATGCATGAGATATGTATATATGGTAAAGCCGAATGGCTAATGT
GAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:68876381 original size:148 final size:147
Alignment explanation
Indices: 68875981--68876366 Score: 679
Period size: 148 Copynumber: 2.6 Consensus size: 147
68875971 CAAGATAAAT
68875981 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
*
68876046 AGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATATGGTAAAGCCGAATGGCTAATGT
66 AGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGT
*
68876111 GAAATATATATATATGAG
131 G-AATATATATACATGAG
68876129 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
68876194 AGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGT
66 AGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGT
*
68876259 G-A-A-ATATGCATGAG
131 GAATATATATACATGAG
*
68876273 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGTATATGTGGT
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAGATATGTATATGTGGT
*
68876338 AAAGCCGAATGGCTAGTGTGAAATATGTA
64 AAAGCCGAATGGCTAATGTGAAATATGTA
68876367 GGCGATGTGT
Statistics
Matches: 231, Mismatches: 5, Indels: 6
0.95 0.02 0.02
Matches are distributed among these distances:
144 44 0.19
145 3 0.01
146 54 0.23
148 130 0.56
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.31
Consensus pattern (147 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
AGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGT
GAATATATATACATGAG
Found at i:68877889 original size:40 final size:40
Alignment explanation
Indices: 68877834--68877909 Score: 152
Period size: 40 Copynumber: 1.9 Consensus size: 40
68877824 CGAGAGTTAT
68877834 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
68877874 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
68877910 GGTGTTGTGA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
Found at i:68878411 original size:38 final size:38
Alignment explanation
Indices: 68878368--68878443 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
68878358 TTCATCCTTT
68878368 TTCATTTCTTTTGGCCGAAAATTCTGAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTGAGGAAGGAGGAA
*
68878406 TTCATTTCTTTTGGCCGAAAATTCTTAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTGAGGAAGGAGGAA
68878444 GGAGTTCTTG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.29, C:0.13, G:0.25, T:0.33
Consensus pattern (38 bp):
TTCATTTCTTTTGGCCGAAAATTCTGAGGAAGGAGGAA
Found at i:68879726 original size:40 final size:40
Alignment explanation
Indices: 68879632--68879776 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
68879622 TACTCGAATG
*
68879632 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
68879673 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
68879713 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
68879753 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
68879777 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:68881218 original size:40 final size:40
Alignment explanation
Indices: 68881174--68881321 Score: 233
Period size: 40 Copynumber: 3.7 Consensus size: 40
68881164 ACAGGTGTTA
68881174 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
68881214 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
* * * *
68881254 TATCCGGGCTAAGTCCCAAAGAGCATTCGTGCTGGTGCTA
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
* * *
68881294 CATCCGGGCTAAGTCCTGAAGGGCATTC
1 TATCCGGGCTAAGTCCCGAAGAGCATTC
68881322 ATGCCGGTGA
Statistics
Matches: 100, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 100 1.00
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.24
Consensus pattern (40 bp):
TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
Found at i:68881533 original size:25 final size:25
Alignment explanation
Indices: 68881494--68881548 Score: 85
Period size: 25 Copynumber: 2.2 Consensus size: 25
68881484 TGTGTAATAA
68881494 CGAATGAATATAGGCACTATGTGTG
1 CGAATGAATATAGGCACTATGTGTG
*
68881519 CGAATGAAT-TGAGGCACTGTGTGTG
1 CGAATGAATAT-AGGCACTATGTGTG
68881544 CGAAT
1 CGAAT
68881549 TCTTTAACCG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
24 1 0.04
25 27 0.96
ACGTcount: A:0.29, C:0.13, G:0.31, T:0.27
Consensus pattern (25 bp):
CGAATGAATATAGGCACTATGTGTG
Found at i:68884899 original size:48 final size:48
Alignment explanation
Indices: 68884828--68885165 Score: 577
Period size: 48 Copynumber: 6.9 Consensus size: 48
68884818 CAAGATAAAT
68884828 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
68884876 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAG
68884926 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
68884974 ATATGTATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
68885022 ATATGTATATGTGGTAAAGCCGAATGGATAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
68885070 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTG--A-A-ATATGTATGAG
*
68885122 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
68885166 GGCAATGTGT
Statistics
Matches: 275, Mismatches: 9, Indels: 12
0.93 0.03 0.04
Matches are distributed among these distances:
48 178 0.65
49 5 0.02
50 47 0.17
51 1 0.00
52 44 0.16
ACGTcount: A:0.37, C:0.06, G:0.26, T:0.32
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:68885193 original size:146 final size:145
Alignment explanation
Indices: 68884828--68885165 Score: 563
Period size: 146 Copynumber: 2.3 Consensus size: 145
68884818 CAAGATAAAT
68884828 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT-A
*
68884893 AGCCGAATGGCTAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
65 AGCCGAATGGATAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
*
68884958 GTGAAATATGTATGAG
130 GTGAAATATATATGAG
*
68884974 ATATGTATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT-A
*
68885039 AGCCGAATGGATAATGTG-AA-ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
65 AGCCGAATGGATAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
68885102 GTGAAATATATATATATGAG
130 GTG--A-A-ATATATATGAG
*
68885122 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
68885166 GGCAATGTGT
Statistics
Matches: 182, Mismatches: 6, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
144 45 0.25
145 2 0.01
146 82 0.45
147 1 0.01
148 52 0.29
ACGTcount: A:0.37, C:0.06, G:0.26, T:0.32
Consensus pattern (145 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
GCCGAATGGATAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
TGAAATATATATGAG
Found at i:68885361 original size:37 final size:36
Alignment explanation
Indices: 68885312--68885382 Score: 115
Period size: 37 Copynumber: 1.9 Consensus size: 36
68885302 GGAAATATAT
*
68885312 TCCGGGAAGACCCGATGACTACGTGTGGAGATTTTA
1 TCCGGGAAGACCCGATAACTACGTGTGGAGATTTTA
*
68885348 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGG-AAGACCCGATAACTACGTGTGGAGATTT
68885383 CATCTGAGCT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
36 6 0.19
37 26 0.81
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.27
Consensus pattern (36 bp):
TCCGGGAAGACCCGATAACTACGTGTGGAGATTTTA
Found at i:68890150 original size:32 final size:32
Alignment explanation
Indices: 68890114--68890178 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
68890104 CAACATACCC
68890114 ATGTTAGGCTGAATGTTCCTAGTGTTCATACA
1 ATGTTAGGCTGAATGTTCCTAGTGTTCATACA
68890146 ATGTTAGGCTGAATGTTCCTAGTGTTCATACA
1 ATGTTAGGCTGAATGTTCCTAGTGTTCATACA
68890178 A
1 A
68890179 GTCCATATAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.26, C:0.15, G:0.22, T:0.37
Consensus pattern (32 bp):
ATGTTAGGCTGAATGTTCCTAGTGTTCATACA
Found at i:68894862 original size:41 final size:41
Alignment explanation
Indices: 68894799--68894879 Score: 117
Period size: 41 Copynumber: 2.0 Consensus size: 41
68894789 GACGAACTGA
* * *
68894799 CATGCGAACCCTTACCTATTATGTATGTGAACCCTCATAAT
1 CATGCAAACCCTTACCTATTATGCATGCGAACCCTCATAAT
* *
68894840 CATGCAAACCCTTACTTGTTATGCATGCGAACCCTCATAA
1 CATGCAAACCCTTACCTATTATGCATGCGAACCCTCATAA
68894880 GTTGTGAGCC
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.30, C:0.28, G:0.12, T:0.30
Consensus pattern (41 bp):
CATGCAAACCCTTACCTATTATGCATGCGAACCCTCATAAT
Found at i:68895353 original size:27 final size:26
Alignment explanation
Indices: 68895323--68895379 Score: 78
Period size: 27 Copynumber: 2.2 Consensus size: 26
68895313 ATGAATGTCT
*
68895323 TTTGGCGAACTATGTTTGCAGATATG
1 TTTGGCGAACTATGTTTGCAAATATG
* *
68895349 ATTTGGTGAACTTTGTTTGCAAATATG
1 -TTTGGCGAACTATGTTTGCAAATATG
68895376 TTTG
1 TTTG
68895380 TTAAAGTTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
26 4 0.15
27 23 0.85
ACGTcount: A:0.23, C:0.09, G:0.25, T:0.44
Consensus pattern (26 bp):
TTTGGCGAACTATGTTTGCAAATATG
Found at i:68896951 original size:24 final size:26
Alignment explanation
Indices: 68896922--68896970 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
68896912 ATGTATGCTC
*
68896922 TTTCGAGCT-ATA-AACGGTAAGCTT
1 TTTCGAGCTAAAATAACGGTAAGCTT
68896946 TTTCGAGCTAAAATAACGGTAAGCT
1 TTTCGAGCTAAAATAACGGTAAGCT
68896971 CACACGAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 9 0.41
25 2 0.09
26 11 0.50
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (26 bp):
TTTCGAGCTAAAATAACGGTAAGCTT
Found at i:68900387 original size:7 final size:8
Alignment explanation
Indices: 68900369--68900414 Score: 58
Period size: 8 Copynumber: 5.8 Consensus size: 8
68900359 AAAAGTGGAT
68900369 AAAATAGA
1 AAAATAGA
68900377 AAAATAGA
1 AAAATAGA
68900385 AAAATAAGA
1 AAAAT-AGA
*
68900394 AAAA-ATA
1 AAAATAGA
*
68900401 AAAATAAA
1 AAAATAGA
68900409 AAAATA
1 AAAATA
68900415 TCTATGGGTT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
7 6 0.18
8 21 0.62
9 7 0.21
ACGTcount: A:0.80, C:0.00, G:0.07, T:0.13
Consensus pattern (8 bp):
AAAATAGA
Found at i:68902562 original size:42 final size:44
Alignment explanation
Indices: 68902494--68902581 Score: 121
Period size: 42 Copynumber: 2.0 Consensus size: 44
68902484 AAGAAAATTT
68902494 AAGATTTTTATGTTTAATATATTATTATATTAT-TATATA-ATA
1 AAGATTTTTATGTTTAATATATTATTATATTATATATATATATA
*
68902536 AAGATATTTTATGTTTTAA-CTA-TATTATATTATATATATATATA
1 AAGAT-TTTTATG-TTTAATATATTATTATATTATATATATATATA
68902580 AA
1 AA
68902582 CAAAAGAAAC
Statistics
Matches: 41, Mismatches: 1, Indels: 6
0.85 0.02 0.12
Matches are distributed among these distances:
42 16 0.39
43 15 0.37
44 10 0.24
ACGTcount: A:0.42, C:0.01, G:0.05, T:0.52
Consensus pattern (44 bp):
AAGATTTTTATGTTTAATATATTATTATATTATATATATATATA
Found at i:68903487 original size:16 final size:16
Alignment explanation
Indices: 68903466--68903499 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
68903456 ATATATAGTT
68903466 AATTAATT-AAAATATG
1 AATTAATTGAAAAT-TG
68903482 AATTAATTGAAAATTG
1 AATTAATTGAAAATTG
68903498 AA
1 AA
68903500 AAGTGAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.56, C:0.00, G:0.09, T:0.35
Consensus pattern (16 bp):
AATTAATTGAAAATTG
Found at i:68903745 original size:46 final size:47
Alignment explanation
Indices: 68903678--68903778 Score: 132
Period size: 46 Copynumber: 2.2 Consensus size: 47
68903668 ATTGTAATTC
* * * * *
68903678 TTACTATTTCGGATTCGTTCCGATGAGGTACT-TGTGTACTGTACTG
1 TTACTGTTCCGGATTCGTTCCGATGAGGTAATCTGTGAACCGTACTG
*
68903724 TTACTGTTCCGGATTTGTTCCGATGAGGTAATCTGTGAACCGTACTG
1 TTACTGTTCCGGATTCGTTCCGATGAGGTAATCTGTGAACCGTACTG
*
68903771 CTACTGTT
1 TTACTGTT
68903779 ATTGTTACTG
Statistics
Matches: 47, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
46 28 0.60
47 19 0.40
ACGTcount: A:0.18, C:0.19, G:0.24, T:0.40
Consensus pattern (47 bp):
TTACTGTTCCGGATTCGTTCCGATGAGGTAATCTGTGAACCGTACTG
Found at i:68903938 original size:36 final size:36
Alignment explanation
Indices: 68903898--68903968 Score: 90
Period size: 36 Copynumber: 2.0 Consensus size: 36
68903888 GGAACTGAAA
*
68903898 ATATC-GACTATTATTGAATAATTTAATTGTTACTGT
1 ATATCTGACTATTACTGAATAA-TTAATTGTTACTGT
* * *
68903934 ATATCTGATTTTTACTGAATAATTGATTGTTACTG
1 ATATCTGACTATTACTGAATAATTAATTGTTACTG
68903969 GATAACCGAT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
36 17 0.57
37 13 0.43
ACGTcount: A:0.31, C:0.08, G:0.13, T:0.48
Consensus pattern (36 bp):
ATATCTGACTATTACTGAATAATTAATTGTTACTGT
Found at i:68903950 original size:18 final size:18
Alignment explanation
Indices: 68903912--68904050 Score: 82
Period size: 18 Copynumber: 7.2 Consensus size: 18
68903902 CGACTATTAT
*
68903912 TGAATAATTTAATTGTTAC
1 TGAATAA-TTGATTGTTAC
* *
68903931 TGTAT-ATCTGATTTTTAC
1 TGAATAAT-TGATTGTTAC
68903949 TGAATAATTGATTGTTAC
1 TGAATAATTGATTGTTAC
*
68903967 TGGATAACCGATCAATTGATTGATAC
1 T-G---A---AT-AATTGATTGTTAC
** * *
68903993 TGAATAGCTGATTATTAT
1 TGAATAATTGATTGTTAC
68904011 TGAATAATTGATTGTTAC
1 TGAATAATTGATTGTTAC
* * *
68904029 CGAATAACTGACTGTTAC
1 TGAATAATTGATTGTTAC
68904047 TGAA
1 TGAA
68904051 AAAAAAATAA
Statistics
Matches: 91, Mismatches: 19, Indels: 21
0.69 0.15 0.16
Matches are distributed among these distances:
17 1 0.01
18 63 0.69
19 9 0.10
22 2 0.02
25 3 0.03
26 13 0.14
ACGTcount: A:0.33, C:0.10, G:0.16, T:0.41
Consensus pattern (18 bp):
TGAATAATTGATTGTTAC
Found at i:68910050 original size:18 final size:18
Alignment explanation
Indices: 68910027--68910074 Score: 69
Period size: 18 Copynumber: 2.7 Consensus size: 18
68910017 TTGCATACTG
*
68910027 TTTACTGTTTCTGCACTA
1 TTTACTGTTACTGCACTA
* *
68910045 TTTACTATTACTGCACTG
1 TTTACTGTTACTGCACTA
68910063 TTTACTGTTACT
1 TTTACTGTTACT
68910075 AAAATGGGCC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.19, C:0.21, G:0.10, T:0.50
Consensus pattern (18 bp):
TTTACTGTTACTGCACTA
Found at i:68911079 original size:21 final size:21
Alignment explanation
Indices: 68911046--68911088 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
68911036 ACATTACACC
* *
68911046 ATTAAATTATTGTGTCGATTA
1 ATTAAAATATTGTGTAGATTA
* *
68911067 ATTAAAATCTTGTTTAGATTA
1 ATTAAAATATTGTGTAGATTA
68911088 A
1 A
68911089 CTAATTAACT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.37, C:0.05, G:0.12, T:0.47
Consensus pattern (21 bp):
ATTAAAATATTGTGTAGATTA
Found at i:68926416 original size:40 final size:40
Alignment explanation
Indices: 68926318--68926580 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
68926308 TCCTCGTTCA
* * * * *
68926318 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
68926357 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
68926397 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
68926437 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
68926477 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
68926517 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
68926557 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
68926581 CAGCATTCAA
Statistics
Matches: 200, Mismatches: 20, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 37 0.19
40 155 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:68929693 original size:21 final size:21
Alignment explanation
Indices: 68929651--68929700 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
68929641 CAATTATTTG
* ***
68929651 TATCTGGTAGCTTGTTTGCAT
1 TATCTGGTGGCTTGTCCACAT
68929672 TATCTGGTGGCTTGTCCACAT
1 TATCTGGTGGCTTGTCCACAT
68929693 TAT-TGGTG
1 TATCTGGTG
68929701 TGTTAATGGA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
20 5 0.20
21 20 0.80
ACGTcount: A:0.14, C:0.16, G:0.26, T:0.44
Consensus pattern (21 bp):
TATCTGGTGGCTTGTCCACAT
Found at i:68930825 original size:13 final size:13
Alignment explanation
Indices: 68930807--68930831 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
68930797 AACTTTAGAT
68930807 TGTGAAACTATAC
1 TGTGAAACTATAC
68930820 TGTGAAACTATA
1 TGTGAAACTATA
68930832 GATATGACTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.12, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTGAAACTATAC
Found at i:68931762 original size:19 final size:19
Alignment explanation
Indices: 68931726--68931764 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
68931716 TTTTCACCAT
* *
68931726 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
68931745 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
68931764 A
1 A
68931765 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:68932314 original size:28 final size:27
Alignment explanation
Indices: 68932228--68932317 Score: 101
Period size: 27 Copynumber: 3.2 Consensus size: 27
68932218 GTGAGAGAGT
*
68932228 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
** *
68932257 CACCAGAACAGAT-ATACGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCA-TGC
68932284 CACCAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCAT-GC
68932312 CACCAG
1 CACCAG
68932318 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 23 0.44
28 22 0.42
29 7 0.13
ACGTcount: A:0.32, C:0.24, G:0.24, T:0.19
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:68935339 original size:21 final size:21
Alignment explanation
Indices: 68935315--68935354 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
68935305 ATTTTGTAAT
*
68935315 TTAATGAAAAATTAAAACAAA
1 TTAAAGAAAAATTAAAACAAA
*
68935336 TTAAAGAAAGATTAAAACA
1 TTAAAGAAAAATTAAAACA
68935355 TTTTTATCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.65, C:0.05, G:0.07, T:0.23
Consensus pattern (21 bp):
TTAAAGAAAAATTAAAACAAA
Found at i:68936331 original size:36 final size:35
Alignment explanation
Indices: 68936276--68936357 Score: 101
Period size: 36 Copynumber: 2.3 Consensus size: 35
68936266 ACTCCCTATT
* *
68936276 TTGGCGTGTTTTCGGTTGGACTAGCTCTTCGGAGCA
1 TTGGCGTG-TATCGGTTGGACTAGCTCTTAGGAGCA
* *
68936312 GTTGGCGTGTATCGGTTGGATTAGCTCTTATGAGCA
1 -TTGGCGTGTATCGGTTGGACTAGCTCTTAGGAGCA
68936348 TTCGGCGTGT
1 TT-GGCGTGT
68936358 TTTCGAATGG
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
35 2 0.05
36 30 0.75
37 8 0.20
ACGTcount: A:0.12, C:0.17, G:0.34, T:0.37
Consensus pattern (35 bp):
TTGGCGTGTATCGGTTGGACTAGCTCTTAGGAGCA
Found at i:68949879 original size:145 final size:145
Alignment explanation
Indices: 68949637--68950196 Score: 1093
Period size: 145 Copynumber: 3.9 Consensus size: 145
68949627 AAATTGTACA
68949637 GCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCTATAA
1 GCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCTATAA
*
68949702 ATTATTTACATTAAGGGTGCGACTTTACCGAGTCGATTTTGGACAGCGGAAAAGGTAATTGTGCG
66 ATTATTTACATTAAGGGTGCGACTTTACCGAGTCGATTTTGGACAGCGGAAAAGGTAAGTGTGCG
68949767 AACTTGAAATGCATG
131 AACTTGAAATGCATG
68949782 GCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCTATAA
1 GCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCTATAA
68949847 ATTATTTACATTAAGGGTGCGACTTTACCGAGTCGATTTTGGACAGCGGAAAAGGTAAGTGTGCG
66 ATTATTTACATTAAGGGTGCGACTTTACCGAGTCGATTTTGGACAGCGGAAAAGGTAAGTGTGCG
68949912 AACTTGAAATGCATG
131 AACTTGAAATGCATG
68949927 GCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCTATAA
1 GCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCTATAA
68949992 ATTATTTACATTAAGGGTGCGACTTTACCGAGTCGATTTTGGACAGCGGAAAAGGTAAGTGTGCG
66 ATTATTTACATTAAGGGTGCGACTTTACCGAGTCGATTTTGGACAGCGGAAAAGGTAAGTGTGCG
68950057 AACTTGAAATGCATG
131 AACTTGAAATGCATG
*
68950072 GCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTACGAACCCAATATATATTTTCTATAA
1 GCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCTATAA
*
68950137 ATTATTTACATTAAGGGTGCGACTTTACCGAGTTGATTTTGGACAGCGGAAAAGGTAAGT
66 ATTATTTACATTAAGGGTGCGACTTTACCGAGTCGATTTTGGACAGCGGAAAAGGTAAGT
68950197 ACCTTGAGTT
Statistics
Matches: 412, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
145 412 1.00
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.32
Consensus pattern (145 bp):
GCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCTATAA
ATTATTTACATTAAGGGTGCGACTTTACCGAGTCGATTTTGGACAGCGGAAAAGGTAAGTGTGCG
AACTTGAAATGCATG
Found at i:68955339 original size:37 final size:37
Alignment explanation
Indices: 68955289--68955438 Score: 273
Period size: 37 Copynumber: 4.1 Consensus size: 37
68955279 TGTTATTAAG
68955289 ATCGTGGGACATGGAAACATTTGAGTAGACTAAGTAT
1 ATCGTGGGACATGGAAACATTTGAGTAGACTAAGTAT
68955326 ATCGTGGGACATGGAAACATTTGAGTAGACTAAGTAT
1 ATCGTGGGACATGGAAACATTTGAGTAGACTAAGTAT
*
68955363 ATCGTGGGACATGGAAACATTTGATTAGACTAAGTAT
1 ATCGTGGGACATGGAAACATTTGAGTAGACTAAGTAT
* *
68955400 ATCATGGGACATGGAAACATTTGAGTACACTAAGTAT
1 ATCGTGGGACATGGAAACATTTGAGTAGACTAAGTAT
68955437 AT
1 AT
68955439 GAATAAGGGG
Statistics
Matches: 109, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 109 1.00
ACGTcount: A:0.36, C:0.11, G:0.25, T:0.28
Consensus pattern (37 bp):
ATCGTGGGACATGGAAACATTTGAGTAGACTAAGTAT
Found at i:68956513 original size:16 final size:16
Alignment explanation
Indices: 68956474--68956507 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
68956464 GAAAACATCT
*
68956474 CAAAAGAATAAAGAATA
1 CAAAA-AATAAAGAAAA
68956491 CAAAAAATAAAGAAAA
1 CAAAAAATAAAGAAAA
68956507 C
1 C
68956508 CCAAAACTCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.74, C:0.09, G:0.09, T:0.09
Consensus pattern (16 bp):
CAAAAAATAAAGAAAA
Found at i:68964597 original size:15 final size:15
Alignment explanation
Indices: 68964577--68964608 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
68964567 ATACATAGTC
68964577 TCATCGAACCATCTT
1 TCATCGAACCATCTT
68964592 TCATCGAACCATCTT
1 TCATCGAACCATCTT
68964607 TC
1 TC
68964609 TTCTTAACAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.25, C:0.34, G:0.06, T:0.34
Consensus pattern (15 bp):
TCATCGAACCATCTT
Found at i:68980447 original size:43 final size:45
Alignment explanation
Indices: 68980381--68980499 Score: 151
Period size: 42 Copynumber: 2.8 Consensus size: 45
68980371 CTCATAGTGC
* * *
68980381 CATACCAATGCC-ATATCCCAGATATGGTTTTACATG-GGA-TCT
1 CATATCAATGCCAATATCCCAGATATGGTCTTACATGTGAAGTCT
*
68980423 CATATCAATGCCAATAGCCCAGATATGGTCTT--ATGTGAAGTCT
1 CATATCAATGCCAATATCCCAGATATGGTCTTACATGTGAAGTCT
*
68980466 CATATCGATG-CAATATCCCAGATATGGTCTTACA
1 CATATCAATGCCAATATCCCAGATATGGTCTTACA
68980500 CGTAATCTCA
Statistics
Matches: 66, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
41 3 0.05
42 33 0.50
43 29 0.44
44 1 0.02
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (45 bp):
CATATCAATGCCAATATCCCAGATATGGTCTTACATGTGAAGTCT
Found at i:68989863 original size:42 final size:41
Alignment explanation
Indices: 68989752--68989865 Score: 147
Period size: 43 Copynumber: 2.7 Consensus size: 41
68989742 TACCATACCA
* *
68989752 ATGCCATATCCCAGATATGGTCTTACATGGGAGCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACA-CGAAGCTCATATCG
* * * *
68989794 ATGCAAATAGCCCAGCTATGGTCTTACACGAAGTCTCATATGG
1 ATGC-CATATCCCAGATATGGTCTTACACGAAG-CTCATATCG
68989837 ATGCCATATCCCAGATATGGTCTTACACG
1 ATGCCATATCCCAGATATGGTCTTACACG
68989866 TAATTTCAAA
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
42 29 0.48
43 32 0.52
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (41 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAGCTCATATCG
Found at i:68998187 original size:16 final size:16
Alignment explanation
Indices: 68998168--68998200 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
68998158 GATGAAAAAG
*
68998168 ATAGAATGTGATATGT
1 ATAGAATATGATATGT
68998184 ATAGAATATGATATGT
1 ATAGAATATGATATGT
68998200 A
1 A
68998201 GAAGTCCTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.42, C:0.00, G:0.21, T:0.36
Consensus pattern (16 bp):
ATAGAATATGATATGT
Found at i:69003004 original size:20 final size:20
Alignment explanation
Indices: 69002975--69003019 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
69002965 AGAACAAGTA
* *
69002975 TTCATAAAATTATAGAATTT
1 TTCATAAAATTATACAACTT
* *
69002995 TTCATCAAATTTTACAACTT
1 TTCATAAAATTATACAACTT
69003015 TTCAT
1 TTCAT
69003020 TTTAGTCTCT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.38, C:0.13, G:0.02, T:0.47
Consensus pattern (20 bp):
TTCATAAAATTATACAACTT
Found at i:69006905 original size:37 final size:37
Alignment explanation
Indices: 69006855--69007004 Score: 264
Period size: 37 Copynumber: 4.1 Consensus size: 37
69006845 CTTTAGCTCA
* *
69006855 GACAAAATCTCCACACGAAGTTATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
*
69006892 GACAAAATCTCCACACGTAGTCAACGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
*
69006929 GACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
69006966 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
69007003 GA
1 GA
69007005 ATATATTTCC
Statistics
Matches: 107, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 107 1.00
ACGTcount: A:0.28, C:0.31, G:0.19, T:0.21
Consensus pattern (37 bp):
GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
Found at i:69007287 original size:47 final size:47
Alignment explanation
Indices: 69007208--69007589 Score: 595
Period size: 47 Copynumber: 8.1 Consensus size: 47
69007198 TATATATATT
* * **
69007208 TCACA-TGAGCCATTCGGCTTTACCACATATATGCATGTTCGTATTCA
1 TCACATTG-GCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
69007255 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
69007302 TCACATTGGCCATTTGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
69007349 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
69007396 TCACATTGGCCATTCGGCCTTATCACACATAAGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
69007443 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
69007490 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
69007537 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
69007584 TCACAT
1 TCACAT
69007590 AAAATCCTAA
Statistics
Matches: 308, Mismatches: 26, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
47 306 0.99
48 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.32
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:69007328 original size:22 final size:22
Alignment explanation
Indices: 69007301--69007422 Score: 68
Period size: 22 Copynumber: 5.3 Consensus size: 22
69007291 GCTCACATTC
69007301 ATCACATTGGCCATTTGGCCTT
1 ATCACATTGGCCATTTGGCCTT
* ** *
69007323 ATCACATATATG-CATGTTCACATT
1 ATCACAT-T-GGCCAT-TTGGCCTT
*
69007347 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTTGGCCTT
* ** *
69007370 ATCACATATATG-CATGTTCACATT
1 ATCACAT-T-GGCCAT-TTGGCCTT
*
69007394 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTTGGCCTT
69007417 ATCACA
1 ATCACA
69007423 CATAAGCATG
Statistics
Matches: 71, Mismatches: 19, Indels: 20
0.65 0.17 0.18
Matches are distributed among these distances:
22 20 0.28
23 18 0.25
24 19 0.27
25 14 0.20
ACGTcount: A:0.25, C:0.28, G:0.13, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTTGGCCTT
Found at i:69010734 original size:43 final size:42
Alignment explanation
Indices: 69010614--69010778 Score: 152
Period size: 43 Copynumber: 3.9 Consensus size: 42
69010604 AGCTCGTACA
* * *
69010614 ATGCCAACGTCCCAGACTTGGTCTTACATGTAATCAAATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACATGAAATCAAATA-CG
** ** * *
69010657 ATGCCTTTGTCTTAGACAGGGTCTTACACGAAATCAAATACG
1 ATGCCAATGTCCCAGACATGGTCTTACATGAAATCAAATACG
* * *
69010699 ATGTCAATGTCCCAGACATGGTATTACATGTAAATCTCAAAT-TG
1 ATGCCAATGTCCCAGACATGGTCTTACATG-AAA--TCAAATACG
* * *
69010743 ATGCCAACGTCCTAGACGTGGTCTTACATGAAATCA
1 ATGCCAATGTCCCAGACATGGTCTTACATGAAATCA
69010779 CATTTCGAAA
Statistics
Matches: 96, Mismatches: 23, Indels: 8
0.76 0.18 0.06
Matches are distributed among these distances:
41 3 0.03
42 24 0.25
43 37 0.39
44 26 0.27
45 6 0.06
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.28
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGAAATCAAATACG
Found at i:69016113 original size:55 final size:54
Alignment explanation
Indices: 69016035--69016219 Score: 243
Period size: 55 Copynumber: 3.4 Consensus size: 54
69016025 ATTAGGGTTT
*
69016035 AAGGATACCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGG-CATTGGTAA-GTTTCATAAGGC
* *
69016090 AAGGATATCATGTAAGACCATGCC-AGGACATGGCATTGATAAGTTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGG-CATGGCATTGGTAAGTTTC-ATAAGGC
* * *
69016145 AAAGG-TCCCATGTAAGATCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTCATAAGGC
69016198 AAGGATACCATGTAAGACCATG
1 AAGGATACCATGTAAGACCATG
69016220 TTGAGACATG
Statistics
Matches: 114, Mismatches: 10, Indels: 14
0.83 0.07 0.10
Matches are distributed among these distances:
52 4 0.04
53 27 0.24
54 13 0.11
55 63 0.55
56 7 0.06
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTCATAAGGC
Found at i:69016241 original size:108 final size:110
Alignment explanation
Indices: 69016042--69016241 Score: 273
Period size: 108 Copynumber: 1.8 Consensus size: 110
69016032 TTTAAGGATA
*
69016042 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGATATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
* *
69016107 CCATGCCAGGACATGGCATTGATAAGTTTCTATAAGGCAAAGGTC
66 CCATGCCAGGACATGGAAATGATAAGTTTCTATAAGGCAAAGGTC
* * *
69016152 CCATGTAAGATCATGCCAAGGCATGG-CATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGCAAGGATACCATGTAAG
** *
69016214 ACCATG-TTGAGACATGGAAATGGTAAGT
65 ACCATGCCAG-GACATGGAAATGATAAGT
69016242 ATCAAAAGGA
Statistics
Matches: 79, Mismatches: 9, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
107 4 0.05
108 43 0.54
109 7 0.09
110 25 0.32
ACGTcount: A:0.34, C:0.17, G:0.27, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
CCATGCCAGGACATGGAAATGATAAGTTTCTATAAGGCAAAGGTC
Found at i:69016502 original size:16 final size:16
Alignment explanation
Indices: 69016481--69016511 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
69016471 ATAAATTTGA
69016481 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
69016497 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
69016512 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:69023074 original size:56 final size:57
Alignment explanation
Indices: 69023014--69023152 Score: 212
Period size: 56 Copynumber: 2.5 Consensus size: 57
69023004 TCCCAAACAG
**
69023014 GGTCTTACTCGCACACATATATCAGA-GTCACATATCAATGCCAATGTATAAAATGT
1 GGTCTTACTCGCACACATATATCAGATGTCACATATCAATGCCAACATATAAAATGT
* *
69023070 GGTCTTACTCTCACACATATA-CCGATGTCACATATCAATGCCAACATATAAAATGT
1 GGTCTTACTCGCACACATATATCAGATGTCACATATCAATGCCAACATATAAAATGT
*
69023126 TGTCTTACTCGCACACATATATC-GATG
1 GGTCTTACTCGCACACATATATCAGATG
69023153 CCATGGTCTT
Statistics
Matches: 75, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
55 3 0.04
56 71 0.95
57 1 0.01
ACGTcount: A:0.34, C:0.24, G:0.13, T:0.29
Consensus pattern (57 bp):
GGTCTTACTCGCACACATATATCAGATGTCACATATCAATGCCAACATATAAAATGT
Found at i:69028957 original size:42 final size:42
Alignment explanation
Indices: 69028911--69029018 Score: 110
Period size: 44 Copynumber: 2.5 Consensus size: 42
69028901 TCCCAAACAG
*
69028911 GGTCTTACACGAAATCAAATATGATGCCGATGTACCAGACAA
1 GGTCTTACACGAAATCAAATATGATGCCAATGTACCAGACAA
** * ***
69028953 GGTCTTACACGTAAATCTCAAA-CCGATGCCAATGTCCCAGATGT
1 GGTCTTACACG-AAA--TCAAATATGATGCCAATGTACCAGACAA
*
69028997 GGTCTTACACGAAATCACATAT
1 GGTCTTACACGAAATCAAATAT
69029019 TGGAATCCTA
Statistics
Matches: 52, Mismatches: 10, Indels: 8
0.74 0.14 0.11
Matches are distributed among these distances:
41 4 0.08
42 11 0.21
43 6 0.12
44 26 0.50
45 5 0.10
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.24
Consensus pattern (42 bp):
GGTCTTACACGAAATCAAATATGATGCCAATGTACCAGACAA
Found at i:69032188 original size:30 final size:30
Alignment explanation
Indices: 69032152--69032211 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
69032142 TAAACTTGAA
69032152 TTACTCATTAGCGTCTACTCAAGTCACATT
1 TTACTCATTAGCGTCTACTCAAGTCACATT
69032182 TTACTCATTAGCGTCTACTCAAGTCACATT
1 TTACTCATTAGCGTCTACTCAAGTCACATT
69032212 CTCTAATTTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.27, C:0.27, G:0.10, T:0.37
Consensus pattern (30 bp):
TTACTCATTAGCGTCTACTCAAGTCACATT
Found at i:69032524 original size:44 final size:44
Alignment explanation
Indices: 69032471--69032737 Score: 182
Period size: 47 Copynumber: 5.8 Consensus size: 44
69032461 TATACATGTT
* *
69032471 GATGCATGTCCCAGAGATGTCTTACACTGGCACAACTCTCAGTC
1 GATGCATGTCCCAGACATGTCTTACACTGGCACAACTCTCAGCC
* *
69032515 GATGCATGTCCCAGACATGTCTTACACTAGCAC-TCATCTCTACGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCACAAC-TCTC-A-GCC
* * * * *
69032561 GATGCCATGTGCCAAACATGGTCTTACACTGGCACTCATAATGT-GGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCA--CA-ACTCTCAGCC
* * *
69032609 GATGCATGTCCCAGACATGTCTTACACTGTCTATC-ATTGTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGC-A-CAACTCTC-A-GCC
* * * * *
69032656 GATGCCATGTCCCAAACATGGTCTTACACTGGCACTCATAATGT-GGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCA--CA-ACTCTCAGCC
* *
69032704 GATGAATGTCCCAGACATGCCTTACACTGGCACA
1 GATGCATGTCCCAGACATGTCTTACACTGGCACA
69032738 TAAGTAATCC
Statistics
Matches: 181, Mismatches: 24, Indels: 36
0.75 0.10 0.15
Matches are distributed among these distances:
43 1 0.01
44 41 0.23
45 1 0.01
46 33 0.18
47 44 0.24
48 40 0.22
49 14 0.08
50 1 0.01
51 6 0.03
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (44 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCACAACTCTCAGCC
Found at i:69032656 original size:47 final size:47
Alignment explanation
Indices: 69032371--69032736 Score: 255
Period size: 48 Copynumber: 7.7 Consensus size: 47
69032361 GATAAGTTGT
* * * *
69032371 CGATAGCATGTCCTAGACATGGTATTACACTGGCTA-TCATCATAGAGGC
1 CGAT-GCATGTCCCAGACAT-GTCTTACACTGGC-ACTCATTATCGAGGC
** * * ** * *
69032420 TAATGTCATGTCCCAGACATGGTCTTACACTAGCTCTTGTATATAC-ATGT
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCAT-TAT-CGAGGC
* * * * * *
69032470 TGATGCATGTCCCAGAGATGTCTTACACTGGCAC-AACTCTC-A-GT
1 CGATGCATGTCCCAGACATGTCTTACACTGGCACTCATTATCGAGGC
* * * *
69032514 CGATGCATGTCCCAGACATGTCTTACACTAGCACTCA-TCTCTACGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCACTCATTATCGAGGC
* * * *
69032560 CGATGCCATGTGCCAAACATGGTCTTACACTGGCACTCATAAT-GTGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCATTATCGAGGC
* *
69032608 CGATGCATGTCCCAGACATGTCTTACACTGTCTA-TCATTGTCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGC-ACTCATTATCGAGGC
* * *
69032655 CGATGCCATGTCCCAAACATGGTCTTACACTGGCACTCATAAT-GTGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCATTATCGAGGC
* * *
69032703 TGATGAATGTCCCAGACATGCCTTACACTGGCAC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCAC
69032737 ATAAGTAATC
Statistics
Matches: 254, Mismatches: 48, Indels: 33
0.76 0.14 0.10
Matches are distributed among these distances:
44 37 0.15
45 4 0.02
46 39 0.15
47 46 0.18
48 60 0.24
49 60 0.24
50 8 0.03
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (47 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCACTCATTATCGAGGC
Found at i:69032682 original size:95 final size:93
Alignment explanation
Indices: 69032514--69032732 Score: 332
Period size: 95 Copynumber: 2.3 Consensus size: 93
69032504 AACTCTCAGT
* *
69032514 CGATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTCTACGCCGATGCCATGTGCCAAACA
1 CGATGCATGTCCCAGACATGTCTTACACT-GCACTCATCTCGACGCCGATGCCATGTCCCAAACA
69032579 TGGTCTTACACTGGCACTCATAATGTGGC
65 TGGTCTTACACTGGCACTCATAATGTGGC
* *
69032608 CGATGCATGTCCCAGACATGTCTTACACTGTCTA-TCATTGTCGAGGCCGATGCCATGTCCCAAA
1 CGATGCATGTCCCAGACATGTCTTACACTG-C-ACTCA-TCTCGACGCCGATGCCATGTCCCAAA
69032672 CATGGTCTTACACTGGCACTCATAATGTGGC
63 CATGGTCTTACACTGGCACTCATAATGTGGC
* * *
69032703 TGATGAATGTCCCAGACATGCCTTACACTG
1 CGATGCATGTCCCAGACATGTCTTACACTG
69032733 GCACATAAGT
Statistics
Matches: 115, Mismatches: 7, Indels: 5
0.91 0.06 0.04
Matches are distributed among these distances:
93 1 0.01
94 33 0.29
95 81 0.70
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.26
Consensus pattern (93 bp):
CGATGCATGTCCCAGACATGTCTTACACTGCACTCATCTCGACGCCGATGCCATGTCCCAAACAT
GGTCTTACACTGGCACTCATAATGTGGC
Found at i:69041320 original size:47 final size:46
Alignment explanation
Indices: 69041208--69041565 Score: 257
Period size: 47 Copynumber: 7.7 Consensus size: 46
69041198 ATACATGTTA
** * * * *
69041208 ATGCATGTCCCAGACATGTCTTACACTAACAC-AACT-CTCA-GCTG
1 ATGCATGTCCCAGACATGTCTTACACTGGCACTCA-TGTTGAGGCCG
* * *
69041252 ATTCATGTCTCAGACACGTCTTACACTGGCTA-TCATCGTTGAGGCCG
1 ATGCATGTCCCAGACATGTCTTACACTGGC-ACTCAT-GTTGAGGCCG
* * * * *
69041299 ATGTATGTCCCAGGCATGTCTTACACTGGCACTCAT-TTCTACGTCG
1 ATGCATGTCCCAGACATGTCTTACACTGGCACTCATGTT-GAGGCCG
* ** * *
69041345 ATGCCATGTCCCAGACATGGTTTTACACTGGCACTCATAATGTGGCTG
1 ATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCATGTTGAGGCCG
*
69041393 ATGCATGTCCCAGACATGTCTTACACTGGCTA-TCATCGTCGAGGCCG
1 ATGCATGTCCCAGACATGTCTTACACTGGC-ACTCAT-GTTGAGGCCG
* * * **
69041440 ATGCATG-CCTCAGATATGTCTTACACTGGCACTCATCTCT-ATGCTA
1 ATGCATGTCC-CAGACATGTCTTACACTGGCACTCATGT-TGAGGCCG
** * *
69041486 ATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATAATGTGGCTG
1 ATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCATGTTGAGGCCG
* *
69041534 ATGCATG-CCCAAAACATGTCTTACAGTGGCAC
1 ATGCATGTCCC-AGACATGTCTTACACTGGCAC
69041566 ATAAGTAATC
Statistics
Matches: 248, Mismatches: 46, Indels: 38
0.75 0.14 0.11
Matches are distributed among these distances:
44 26 0.10
45 4 0.02
46 53 0.21
47 114 0.46
48 50 0.20
49 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (46 bp):
ATGCATGTCCCAGACATGTCTTACACTGGCACTCATGTTGAGGCCG
Found at i:69041393 original size:141 final size:141
Alignment explanation
Indices: 69041248--69041563 Score: 458
Period size: 141 Copynumber: 2.2 Consensus size: 141
69041238 ACAACTCTCA
* * * *
69041248 GCTGATTCATGTCTCAGACACGTCTTACACTGGCTATCATCGTTGAGGCCGATGTATGTCC-CAG
1 GCTGATGCATGTCCCAGACACGTCTTACACTGGCTATCATCGTCGAGGCCGATGCATG-CCTCAG
* * * *
69041312 GCATGTCTTACACTGGCACTCATTTCTACG-TCGATGCCATGTCCCAGACATGGTTTTACACTGG
65 ACATGTCTTACACTGGCACTCATCTCTACGCT-AATGCCATGTCCCAGACATGGTCTTACACTGG
69041376 CACTCATAATGTG
129 CACTCATAATGTG
*
69041389 GCTGATGCATGTCCCAGACATGTCTTACACTGGCTATCATCGTCGAGGCCGATGCATGCCTCAGA
1 GCTGATGCATGTCCCAGACACGTCTTACACTGGCTATCATCGTCGAGGCCGATGCATGCCTCAGA
* *
69041454 TATGTCTTACACTGGCACTCATCTCTATGCTAATGCCATGTCCCAGACATGGTCTTACACTGGCA
66 CATGTCTTACACTGGCACTCATCTCTACGCTAATGCCATGTCCCAGACATGGTCTTACACTGGCA
69041519 CTCATAATGTG
131 CTCATAATGTG
* * *
69041530 GCTGATGCATG-CCCAAAACATGTCTTACAGTGGC
1 GCTGATGCATGTCCC-AGACACGTCTTACACTGGC
69041564 ACATAAGTAA
Statistics
Matches: 159, Mismatches: 13, Indels: 6
0.89 0.07 0.03
Matches are distributed among these distances:
140 5 0.03
141 153 0.96
142 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (141 bp):
GCTGATGCATGTCCCAGACACGTCTTACACTGGCTATCATCGTCGAGGCCGATGCATGCCTCAGA
CATGTCTTACACTGGCACTCATCTCTACGCTAATGCCATGTCCCAGACATGGTCTTACACTGGCA
CTCATAATGTG
Found at i:69041693 original size:15 final size:15
Alignment explanation
Indices: 69041675--69041725 Score: 65
Period size: 15 Copynumber: 3.7 Consensus size: 15
69041665 CACAATCTAG
69041675 CAATTCATACTATAT
1 CAATTCATACTATAT
69041690 CAATTCA-A-TA-A-
1 CAATTCATACTATAT
*
69041701 CAAATCATACTATAT
1 CAATTCATACTATAT
69041716 CAATTCATAC
1 CAATTCATAC
69041726 ATTAATAATG
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
11 6 0.20
12 2 0.07
13 4 0.13
14 2 0.07
15 16 0.53
ACGTcount: A:0.45, C:0.22, G:0.00, T:0.33
Consensus pattern (15 bp):
CAATTCATACTATAT
Found at i:69044823 original size:21 final size:22
Alignment explanation
Indices: 69044779--69044833 Score: 67
Period size: 21 Copynumber: 2.5 Consensus size: 22
69044769 TGCAGGGCTC
* *
69044779 ACATGCCCGTGTGGTCCAAGGG
1 ACATGCCTGTGTGGACCAAGGG
*
69044801 ACATGCCTGTGT-GACCCAGGG
1 ACATGCCTGTGTGGACCAAGGG
*
69044822 ACATGCTTGTGT
1 ACATGCCTGTGT
69044834 TGGAGGCCGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
21 18 0.62
22 11 0.38
ACGTcount: A:0.18, C:0.25, G:0.33, T:0.24
Consensus pattern (22 bp):
ACATGCCTGTGTGGACCAAGGG
Found at i:69048030 original size:25 final size:25
Alignment explanation
Indices: 69048002--69048071 Score: 97
Period size: 25 Copynumber: 2.8 Consensus size: 25
69047992 GAGGAAGTAC
*
69048002 AAAAGGGCTATGCCCCAGTTTACCGA
1 AAAAGGGCTTTGCCCCAGTTTACC-A
* *
69048028 AAAA-GGCTTTGCCCTAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
69048052 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
69048072 ATTAAAAGAG
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
24 5 0.13
25 30 0.77
26 4 0.10
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:69048084 original size:24 final size:23
Alignment explanation
Indices: 69048001--69048098 Score: 79
Period size: 25 Copynumber: 4.0 Consensus size: 23
69047991 GGAGGAAGTA
* * *
69048001 CAAAAGGGCTATGCCCCAGTTTAC
1 CAAAAAGGCTTTGCCCCAG-TTAT
*
69048025 CGAAAAAGGCTTTGCCCTAGTTTAT
1 C-AAAAAGGCTTTGCCCCAG-TTAT
69048050 CAAAAAGGGCTTTGCCCCAGTTAT
1 CAAAAA-GGCTTTGCCCCAGTTAT
* **
69048074 TAAAAGAGGCTAGGCCTCCAGTTAT
1 CAAAA-AGGCTTTGCC-CCAGTTAT
69048099 ATGATAAAGC
Statistics
Matches: 62, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
24 21 0.34
25 41 0.66
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (23 bp):
CAAAAAGGCTTTGCCCCAGTTAT
Found at i:69048328 original size:31 final size:31
Alignment explanation
Indices: 69048293--69048407 Score: 178
Period size: 31 Copynumber: 3.7 Consensus size: 31
69048283 TATTTGCAGT
69048293 AAAGGCTTCGGCCCAGTGATATGAATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
*
69048324 AAAGGCTTCGACCCAGTGATATGAATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
* * * *
69048355 AAAGGCTCCGGCCCAGTGACATGGATAATGT
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
69048386 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
69048408 CTGAGATTGA
Statistics
Matches: 76, Mismatches: 8, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
30 4 0.05
31 72 0.95
ACGTcount: A:0.33, C:0.19, G:0.26, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:69049063 original size:6 final size:6
Alignment explanation
Indices: 69049025--69049128 Score: 56
Period size: 6 Copynumber: 16.8 Consensus size: 6
69049015 TTGCATTCAC
*
69049025 ATTCTG ATAT-TG ATTCTG -TTACCTG ATAT-TG ATTCTG ATTCTA ATTCT-
1 ATTCTG AT-TCTG ATTCTG ATT--CTG AT-TCTG ATTCTG ATTCTG ATTCTG
* * * *
69049073 ATCACCTA ATTCTG ACTCTG ATTCTG ATTCTG -TCACCTG ATTCTG ATTCTG
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
69049124 ATTCT
1 ATTCT
69049129 CATTTTGGTT
Statistics
Matches: 77, Mismatches: 8, Indels: 26
0.69 0.07 0.23
Matches are distributed among these distances:
5 7 0.09
6 56 0.73
7 9 0.12
8 4 0.05
9 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.12, T:0.46
Consensus pattern (6 bp):
ATTCTG
Found at i:69049063 original size:31 final size:31
Alignment explanation
Indices: 69049025--69049128 Score: 131
Period size: 31 Copynumber: 3.4 Consensus size: 31
69049015 TTGCATTCAC
*
69049025 ATTCTGATAT-TGATTCTGTTACCTGATAT-TG
1 ATTCTGAT-TCTGATTCTGTCACCTGAT-TCTG
* * *
69049056 ATTCTGATTCTAATTCTATCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTCACCTGATTCTG
*
69049087 ACTCTGATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTGATTCTG
69049118 ATTCTGATTCT
1 ATTCTGATTCT
69049129 CATTTTGGTT
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
30 2 0.03
31 60 0.97
ACGTcount: A:0.21, C:0.20, G:0.12, T:0.46
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTGATTCTG
Found at i:69058031 original size:48 final size:48
Alignment explanation
Indices: 69057973--69058100 Score: 175
Period size: 48 Copynumber: 2.7 Consensus size: 48
69057963 ACCATGCTAA
*
69057973 ATGTGCCTGTGTAAGACCATGTCTAGGACATGGCATAGGCAATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTAGGACATGGCATAGACAATGATAT
* * * * * *
69058021 ATGTGTCTGTGTAAGACCATGTTTGGGACATAGCATCGACTATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTAGGACATGGCATAGACAATGATAT
* *
69058069 CTGTGCCTGTGTAAGACCATTTCTAGGACATG
1 ATGTGCCTGTGTAAGACCATGTCTAGGACATG
69058101 TATGTACGAT
Statistics
Matches: 67, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
48 67 1.00
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (48 bp):
ATGTGCCTGTGTAAGACCATGTCTAGGACATGGCATAGACAATGATAT
Found at i:69070412 original size:19 final size:19
Alignment explanation
Indices: 69070377--69070414 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
69070367 TTGCAATTTA
*
69070377 AATTTTTATTTTCTTTTCT
1 AATTTTTATTTTATTTTCT
69070396 AATTTTTCA-TTTATTTTCT
1 AATTTTT-ATTTTATTTTCT
69070415 TATGACAGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 16 0.94
20 1 0.06
ACGTcount: A:0.18, C:0.11, G:0.00, T:0.71
Consensus pattern (19 bp):
AATTTTTATTTTATTTTCT
Found at i:69074495 original size:22 final size:23
Alignment explanation
Indices: 69074470--69074515 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
69074460 CAACCAAATC
69074470 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
69074492 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
69074515 A
1 A
69074516 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:69074521 original size:23 final size:23
Alignment explanation
Indices: 69074477--69074521 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
69074467 ATCAATTCAA
*
69074477 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
69074500 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
69074522 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:69082237 original size:22 final size:23
Alignment explanation
Indices: 69082212--69082257 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
69082202 CAACCAAATC
69082212 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
69082234 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
69082257 A
1 A
69082258 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:69082263 original size:23 final size:23
Alignment explanation
Indices: 69082219--69082263 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
69082209 ATCAATTCAA
*
69082219 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
69082242 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
69082264 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:69085298 original size:49 final size:49
Alignment explanation
Indices: 69085241--69085336 Score: 192
Period size: 49 Copynumber: 2.0 Consensus size: 49
69085231 TATCCCAAAA
69085241 GGGTTGATACATCAGCAAAAGAAGTGATTCTTCACTGATGTGAAAAATG
1 GGGTTGATACATCAGCAAAAGAAGTGATTCTTCACTGATGTGAAAAATG
69085290 GGGTTGATACATCAGCAAAAGAAGTGATTCTTCACTGATGTGAAAAA
1 GGGTTGATACATCAGCAAAAGAAGTGATTCTTCACTGATGTGAAAAA
69085337 CTACTTCTGG
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.38, C:0.12, G:0.24, T:0.26
Consensus pattern (49 bp):
GGGTTGATACATCAGCAAAAGAAGTGATTCTTCACTGATGTGAAAAATG
Found at i:69089030 original size:30 final size:30
Alignment explanation
Indices: 69088994--69089054 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
69088984 TAGCTGAAGG
*
69088994 TAGTTTAAATCGCACACTTAGTGCCAAAAC
1 TAGTTTAAATCGCACACTTACTGCCAAAAC
69089024 TAGTTTAAATCGCACACTTACTGCCAAAAC
1 TAGTTTAAATCGCACACTTACTGCCAAAAC
69089054 T
1 T
69089055 TCCGATTCAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.36, C:0.25, G:0.11, T:0.28
Consensus pattern (30 bp):
TAGTTTAAATCGCACACTTACTGCCAAAAC
Found at i:69096246 original size:30 final size:30
Alignment explanation
Indices: 69096210--69096271 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
69096200 CAAGTAGCCG
**
69096210 AAGCTAGTTTAAATCGTGCACTTAGTGCCA
1 AAGCTAGTTTAAATCGCACACTTAGTGCCA
69096240 AAGCTAGTTTAAATCGCACACTTAGTGCCA
1 AAGCTAGTTTAAATCGCACACTTAGTGCCA
69096270 AA
1 AA
69096272 ACTTCTGATT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.27
Consensus pattern (30 bp):
AAGCTAGTTTAAATCGCACACTTAGTGCCA
Found at i:69105750 original size:22 final size:22
Alignment explanation
Indices: 69105710--69105751 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
69105700 GACATAGGCG
**
69105710 TGTTCCCTGTTTCGTACGGGCA
1 TGTTCCCTGTTTCACACGGGCA
*
69105732 TGTTCCTTGTTTCACACGGG
1 TGTTCCCTGTTTCACACGGG
69105752 TATATGGCTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.10, C:0.26, G:0.26, T:0.38
Consensus pattern (22 bp):
TGTTCCCTGTTTCACACGGGCA
Found at i:69106468 original size:13 final size:13
Alignment explanation
Indices: 69106452--69106495 Score: 70
Period size: 13 Copynumber: 3.3 Consensus size: 13
69106442 TTTTGCTACG
69106452 AATTTTTTTTTGA
1 AATTTTTTTTTGA
69106465 AATTATTTTTTTGA
1 AATT-TTTTTTTGA
*
69106479 AGTTTTTTTTTGA
1 AATTTTTTTTTGA
69106492 AATT
1 AATT
69106496 GAGAAATAGA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
13 16 0.57
14 12 0.43
ACGTcount: A:0.25, C:0.00, G:0.09, T:0.66
Consensus pattern (13 bp):
AATTTTTTTTTGA
Found at i:69107507 original size:49 final size:50
Alignment explanation
Indices: 69107416--69107554 Score: 165
Period size: 49 Copynumber: 2.8 Consensus size: 50
69107406 AACAAACAAA
* * * *
69107416 CAATGAAGCATAATTAAAACACCATTTTATTTATGAATGCAACAGAA-TAAT
1 CAATGAAGCATAAATAAAACA-CACTCTATTTATGAATGCAACAAAACT-AT
* *
69107467 CTATGAAGCATAAATGAAACA-ACTCTATTTATGAATGCAACAAAACTAT
1 CAATGAAGCATAAATAAAACACACTCTATTTATGAATGCAACAAAACTAT
* *
69107516 CAATGAAGCATAATTAAAACACCACTTTATTTATGAATG
1 CAATGAAGCATAAATAAAACA-CACTCTATTTATGAATG
69107555 AAACTTTATT
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
49 41 0.55
50 1 0.01
51 33 0.44
ACGTcount: A:0.46, C:0.15, G:0.10, T:0.29
Consensus pattern (50 bp):
CAATGAAGCATAAATAAAACACACTCTATTTATGAATGCAACAAAACTAT
Found at i:69111109 original size:7 final size:7
Alignment explanation
Indices: 69111097--69111122 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
69111087 TCACTCACCA
69111097 TCTCTTT
1 TCTCTTT
69111104 TCTCTTT
1 TCTCTTT
69111111 TCTCTTT
1 TCTCTTT
69111118 TCTCT
1 TCTCT
69111123 CTTTTTTAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (7 bp):
TCTCTTT
Found at i:69112096 original size:58 final size:59
Alignment explanation
Indices: 69112032--69112147 Score: 164
Period size: 61 Copynumber: 1.9 Consensus size: 59
69112022 ATAACTTTAA
* * *
69112032 TATTAAATTAATATAAT-TCTTATC-AAGATAAATATTATATTGAATTTAATATTAAATC
1 TATTAAATTAATACAATAT-TTATCTAAGATAAATATTAAATTAAATTTAATATTAAATC
69112090 TATTAAATTAATACAATATTTATCTATAAGATAAATATTAAATTAAATTTAATATTAA
1 TATTAAATTAATACAATATTTATC--TAAGATAAATATTAAATTAAATTTAATATTAA
69112148 TATAATCAAT
Statistics
Matches: 51, Mismatches: 3, Indels: 5
0.86 0.05 0.08
Matches are distributed among these distances:
58 21 0.41
59 1 0.02
61 29 0.57
ACGTcount: A:0.49, C:0.04, G:0.03, T:0.44
Consensus pattern (59 bp):
TATTAAATTAATACAATATTTATCTAAGATAAATATTAAATTAAATTTAATATTAAATC
Done.