Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 204 of 295
Found at i:69922508 original size:27 final size:26
Alignment explanation
Indices: 69922452--69922509 Score: 62
Period size: 27 Copynumber: 2.2 Consensus size: 26
69922442 TGAAGAAGAT
*** *
69922452 AAGAAGAGAGAAAAATAAAGGGGAAG
1 AAGAAGAGAGAAAAATAAAGAAAAAA
*
69922478 AAGAAGAGAAGGAAAATAAAGAAAAAA
1 AAGAAGAG-AGAAAAATAAAGAAAAAA
69922505 AAGAA
1 AAGAA
69922510 AATAATTTGT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 8 0.31
27 18 0.69
ACGTcount: A:0.69, C:0.00, G:0.28, T:0.03
Consensus pattern (26 bp):
AAGAAGAGAGAAAAATAAAGAAAAAA
Found at i:69925740 original size:43 final size:42
Alignment explanation
Indices: 69925692--69925788 Score: 140
Period size: 43 Copynumber: 2.3 Consensus size: 42
69925682 ATGTGTTTAT
*
69925692 GTGTAAGACCATGTCTGGGACATTGGCATCATTATGTAATTAC
1 GTGTAAGACCATGTCTGGGACATTGGCATCACTAT-TAATTAC
* * * *
69925735 GTGTAACACCATGTCTGGGACATTGGCATCGCTATTTATTTC
1 GTGTAAGACCATGTCTGGGACATTGGCATCACTATTAATTAC
69925777 GTGTAAGACCAT
1 GTGTAAGACCAT
69925789 AGCTAGGCTA
Statistics
Matches: 48, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
42 16 0.33
43 32 0.67
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.33
Consensus pattern (42 bp):
GTGTAAGACCATGTCTGGGACATTGGCATCACTATTAATTAC
Found at i:69928223 original size:46 final size:45
Alignment explanation
Indices: 69928156--69928300 Score: 141
Period size: 46 Copynumber: 3.1 Consensus size: 45
69928146 TATTTGGGCA
69928156 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * *** * *
69928202 TCCGAACTCATTGAGTTGAGTCCTAGTTCGAGAGATGTAACTAGGCA--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GGAATG
* *
69928249 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATATGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAT-GGAATG
69928295 TCCGAA
1 TCCGAA
69928301 TCTTACTCAT
Statistics
Matches: 76, Mismatches: 17, Indels: 12
0.72 0.16 0.11
Matches are distributed among these distances:
44 4 0.05
45 1 0.01
46 36 0.47
47 30 0.39
48 1 0.01
49 3 0.04
50 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATG
Found at i:69929262 original size:46 final size:45
Alignment explanation
Indices: 69929209--69929477 Score: 190
Period size: 46 Copynumber: 5.8 Consensus size: 45
69929199 TATTTGGGCA
*
69929209 TCCGAACTCGTTGAGTTGTGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
69929255 TCCGAACTCGTTGAGTTGAGTCTGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
69929302 TCC-AAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * * *** * *
69929348 TTCGAACTCGTTGAATTGAGTCTGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* * *
69929395 TCCGAGCTCATTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
69929441 -CTCGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
69929478 GTGGGTTACA
Statistics
Matches: 174, Mismatches: 32, Indels: 34
0.73 0.13 0.14
Matches are distributed among these distances:
43 2 0.01
44 6 0.03
45 3 0.02
46 93 0.53
47 60 0.34
48 2 0.01
49 6 0.03
50 2 0.01
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:69929318 original size:47 final size:47
Alignment explanation
Indices: 69929261--69929423 Score: 170
Period size: 47 Copynumber: 3.5 Consensus size: 47
69929251 AATGTCCGAA
69929261 CTCGTTGAGTTGAGTCTGAGTTCGAGAGATGTAACTAGGCATCCAAG
1 CTCGTTGAGTTGAGTCTGAGTTCGAGAGATGTAACTAGGCATCCAAG
* *** * * * * * *
69929308 CTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGAATG-TTCGAA-
1 CTCGTTGAGTTGAGTCTGAGTTCGAGAGATGTA-AC-TAGGCATCCAAG
* *
69929354 CTCGTTGAATTGAGTCTGAGTTCGAGAGATGTAACTAGGCATCCGAG
1 CTCGTTGAGTTGAGTCTGAGTTCGAGAGATGTAACTAGGCATCCAAG
*
69929401 CTCATTGAGTTGAGTCTGAGTTC
1 CTCGTTGAGTTGAGTCTGAGTTC
69929424 ACTTATGGAT
Statistics
Matches: 87, Mismatches: 24, Indels: 10
0.72 0.20 0.08
Matches are distributed among these distances:
45 2 0.02
46 30 0.34
47 53 0.61
48 2 0.02
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.31
Consensus pattern (47 bp):
CTCGTTGAGTTGAGTCTGAGTTCGAGAGATGTAACTAGGCATCCAAG
Found at i:69929367 original size:93 final size:93
Alignment explanation
Indices: 69929205--69929470 Score: 417
Period size: 93 Copynumber: 2.9 Consensus size: 93
69929195 AGGATATTTG
* *
69929205 GGCATCCGAA-CTCGTTGAGTTGTGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGA
1 GGCATCC-AAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGA
69929269 GTTGAGTCTGAGTTCGAGAGATGTAACTA
65 GTTGAGTCTGAGTTCGAGAGATGTAACTA
*
69929298 GGCATCCAAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAA
1 GGCATCCAAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAG
69929363 TTGAGTCTGAGTTCGAGAGATGTAACTA
66 TTGAGTCTGAGTTCGAGAGATGTAACTA
* * * * * * *
69929391 GGCATCCGAGCTCATTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCTCGAGCTCATTGAG
1 GGCATCCAAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAG
*
69929456 TTGAGTCCGAGTTCG
66 TTGAGTCTGAGTTCG
69929471 CTTATGGGTG
Statistics
Matches: 160, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
92 2 0.01
93 158 0.99
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.30
Consensus pattern (93 bp):
GGCATCCAAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAG
TTGAGTCTGAGTTCGAGAGATGTAACTA
Found at i:69930844 original size:46 final size:46
Alignment explanation
Indices: 69930777--69931039 Score: 481
Period size: 46 Copynumber: 5.7 Consensus size: 46
69930767 GGGCGTTACA
*
69930777 CTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTAT
1 CTTTCAACCATGGTCTTACACATTTCATATCAGGCTGCCATGGTAT
69930823 CTTTCAACCATGGTCTTACACATTTCATATCAGGCTGCCATGGTAT
1 CTTTCAACCATGGTCTTACACATTTCATATCAGGCTGCCATGGTAT
* *
69930869 CTTTCAACCATGGTCTTACGCATTTCATATCAGGTTGCCATGGTAT
1 CTTTCAACCATGGTCTTACACATTTCATATCAGGCTGCCATGGTAT
*
69930915 CTTTCAACCATGGCCTTACACATTTCATATCAGGCTGCCATGGTAT
1 CTTTCAACCATGGTCTTACACATTTCATATCAGGCTGCCATGGTAT
*
69930961 CTTTCAACCATGGTCTTACATATTTCATATCAGGCTGCCATGGTAT
1 CTTTCAACCATGGTCTTACACATTTCATATCAGGCTGCCATGGTAT
69931007 CTTTCAACCATGGTCTTACACATTTCATATCAG
1 CTTTCAACCATGGTCTTACACATTTCATATCAG
69931040 AGAGCACACT
Statistics
Matches: 208, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 208 1.00
ACGTcount: A:0.24, C:0.25, G:0.15, T:0.36
Consensus pattern (46 bp):
CTTTCAACCATGGTCTTACACATTTCATATCAGGCTGCCATGGTAT
Found at i:69938991 original size:27 final size:26
Alignment explanation
Indices: 69938956--69939067 Score: 116
Period size: 27 Copynumber: 4.2 Consensus size: 26
69938946 AGCATGGCTG
* **
69938956 CCAGAACAGATAATGTGATAGAGTTA
1 CCAGAACAGATAATGTGGTAGAGCCA
*
69938982 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGTAGAGCCA
*
69939010 CCAGAACAGAAATATGTGGTAGAGCCA
1 CCAGAACAGATA-ATGTGGTAGAGCCA
* * *
69939037 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGTAGAGCCA
69939064 CCAG
1 CCAG
69939068 GACGCTTCCT
Statistics
Matches: 72, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
26 6 0.08
27 51 0.71
28 15 0.21
ACGTcount: A:0.38, C:0.21, G:0.24, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGTAGAGCCA
Found at i:69939048 original size:54 final size:54
Alignment explanation
Indices: 69938956--69939067 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
69938946 AGCATGGCTG
* **
69938956 CCAGAACAGATAATGTGATAGAGTTACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGAAAATGTGATAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * *
69939010 CCAGAACAGAAATATGTGGTAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGAAA-ATGTGATAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
69939064 CCAG
1 CCAG
69939068 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 34 0.67
55 17 0.33
ACGTcount: A:0.38, C:0.21, G:0.24, T:0.18
Consensus pattern (54 bp):
CCAGAACAGAAAATGTGATAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:69944211 original size:40 final size:40
Alignment explanation
Indices: 69944164--69944308 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
69944154 CTCGCACAAG
* * * * *
69944164 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
*
69944204 GCCTTCGGGACTTAGCCAGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
69944244 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
69944285 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
69944309 CATTCGAGTA
Statistics
Matches: 90, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 3 0.03
40 57 0.63
41 27 0.30
42 3 0.03
ACGTcount: A:0.24, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:69944291 original size:41 final size:39
Alignment explanation
Indices: 69944128--69944308 Score: 168
Period size: 40 Copynumber: 4.5 Consensus size: 39
69944118 AATCAAGCAT
** ** * * *
69944128 CTTCGGGGTTTAGCCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGGACTTAGCCGGATATAGTCGCTAGCACAAATGC
* * * * *
69944166 CTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGACTT-AGCCGGATATAGTCGCTAGCACAAATGC
69944206 CTTCGGGACTTAGCCAGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGACTTAGCC-GGATATAGTCGCTAGCACAAATGC
* *
69944246 CTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAAGC
1 CTTCGGGA-CTTAG-CCGGATATAGTCGC-TAGCACAAATGC
69944287 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAG-CCGGATAT
69944309 CATTCGAGTA
Statistics
Matches: 118, Mismatches: 18, Indels: 11
0.80 0.12 0.07
Matches are distributed among these distances:
38 9 0.08
39 22 0.19
40 55 0.47
41 29 0.25
42 3 0.03
ACGTcount: A:0.24, C:0.26, G:0.25, T:0.25
Consensus pattern (39 bp):
CTTCGGGACTTAGCCGGATATAGTCGCTAGCACAAATGC
Found at i:69945538 original size:38 final size:38
Alignment explanation
Indices: 69945495--69945570 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
69945485 CAAGAACTCC
69945495 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
69945533 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
69945571 AAAGGATGAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.32
Consensus pattern (38 bp):
TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
Found at i:69948134 original size:36 final size:38
Alignment explanation
Indices: 69948070--69948140 Score: 128
Period size: 38 Copynumber: 1.9 Consensus size: 38
69948060 AGAACTCCTT
69948070 CTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAATTC
1 CTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAATTC
69948108 CTCCTTCCTTAGAATTTT-GGCC-AAAGAAATGAA
1 CTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
69948141 AAAGGATGAA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
36 11 0.33
37 4 0.12
38 18 0.55
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.31
Consensus pattern (38 bp):
CTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAATTC
Found at i:69954782 original size:39 final size:40
Alignment explanation
Indices: 69954737--69954904 Score: 106
Period size: 40 Copynumber: 4.2 Consensus size: 40
69954727 CGGGGTTTAG
* * *
69954737 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
69954776 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
69954816 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
69954856 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
69954897 CCGGATAT
1 CCGGATAT
69954905 CATTCGAGTA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 18 0.17
40 61 0.56
41 27 0.25
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:69954887 original size:41 final size:40
Alignment explanation
Indices: 69954760--69954904 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
69954750 CTCGCACAAG
* * * * *
69954760 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
69954800 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
69954840 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
69954881 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
69954905 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:69956159 original size:37 final size:38
Alignment explanation
Indices: 69956091--69956165 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
69956081 CAAGAACTCC
69956091 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
69956129 TTCCTCCTTCCTTAGAATTTTCGGCC-AAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
69956166 AAAGGATGAA
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
37 11 0.30
38 26 0.70
ACGTcount: A:0.31, C:0.24, G:0.13, T:0.32
Consensus pattern (38 bp):
TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
Found at i:69957191 original size:43 final size:43
Alignment explanation
Indices: 69957143--69957301 Score: 173
Period size: 43 Copynumber: 3.7 Consensus size: 43
69957133 AGATGTTTTC
69957143 ATGTGTAAGACCATGTCTGGGACATTGGCATCATTATGTGATT
1 ATGTGTAAGACCATGTCTGGGACATTGGCATCATTATGTGATT
* * *
69957186 ATGTGTAAGACCATGTCTGGGACATTAGCATCGTTATTTGATT
1 ATGTGTAAGACCATGTCTGGGACATTGGCATCATTATGTGATT
* * *
69957229 -TCGTGTAAGACCATAG-CTGGGATATCGGCATCGA-TATGTGATA
1 AT-GTGTAAGACCAT-GTCTGGGACATTGGCATC-ATTATGTGATT
** * *
69957272 ACATGTAAGACCATATCTGGGATA-TGGCAT
1 ATGTGTAAGACCATGTCTGGGACATTGGCAT
69957302 TGTATGAGCT
Statistics
Matches: 98, Mismatches: 13, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
42 6 0.06
43 91 0.93
44 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (43 bp):
ATGTGTAAGACCATGTCTGGGACATTGGCATCATTATGTGATT
Found at i:69960871 original size:40 final size:40
Alignment explanation
Indices: 69960790--69961010 Score: 331
Period size: 40 Copynumber: 5.6 Consensus size: 40
69960780 AAACCAAGTA
** * * *
69960790 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAATTG
*
69960829 CCTTCGGGACTTAGCCCGGTTATAGTAACTCACACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
69960869 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
*
69960909 CCTTCGGGACTTGGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
* *
69960949 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
69960989 CCTTCGGG-CTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
69961011 CAATCCGAAT
Statistics
Matches: 168, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 26 0.15
40 142 0.85
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.27
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
Found at i:69965572 original size:17 final size:17
Alignment explanation
Indices: 69965550--69965584 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
69965540 CTCGTAGTCT
69965550 TTTAACAATTCTAACCA
1 TTTAACAATTCTAACCA
69965567 TTTAACAATTCTAACCA
1 TTTAACAATTCTAACCA
69965584 T
1 T
69965585 CGACATTGTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.40, C:0.23, G:0.00, T:0.37
Consensus pattern (17 bp):
TTTAACAATTCTAACCA
Found at i:69967480 original size:27 final size:26
Alignment explanation
Indices: 69967433--69967483 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
69967423 CGAGGCTGCC
*
69967433 AGATATTGTGACGAAGTCACCAGAAT
1 AGATATTGTGACGAAGCCACCAGAAT
* *
69967459 AGATATATGTGGCGAGGCCACCAGA
1 AGATAT-TGTGACGAAGCCACCAGA
69967484 TTGCAGCGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.35, C:0.18, G:0.27, T:0.20
Consensus pattern (26 bp):
AGATATTGTGACGAAGCCACCAGAAT
Found at i:69973685 original size:43 final size:42
Alignment explanation
Indices: 69973632--69973800 Score: 128
Period size: 43 Copynumber: 4.0 Consensus size: 42
69973622 CAGAGAACAT
* * *
69973632 ATACAATGCCAACGTCCCGGACGTGGTCTTACATGTAATCA-
1 ATACGATGCCAACGTCCCAGACGTGGTCTTACATGAAATCAG
*
69973673 ATCATCGATGCCACCGTCCCAGACAG-GGTCTTACATGAAATCAG
1 AT-A-CGATGCCAACGTCCCAGAC-GTGGTCTTACATGAAATCAG
* * * * * *
69973717 ATACGATGCCGATGTCCCAGACATGGTCTTATACGTAAAACAG
1 ATACGATGCCAACGTCCCAGACGTGGTCTTACATG-AAATCAG
* * ** *
69973760 A-AGTCTATGCCAACATCATAGACGTGGTCTTACACGAAATC
1 ATA--CGATGCCAACGTCCCAGACGTGGTCTTACATGAAATC
69973801 CTACGTCATG
Statistics
Matches: 100, Mismatches: 20, Indels: 14
0.75 0.15 0.10
Matches are distributed among these distances:
41 2 0.02
42 27 0.27
43 44 0.44
44 27 0.27
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.23
Consensus pattern (42 bp):
ATACGATGCCAACGTCCCAGACGTGGTCTTACATGAAATCAG
Found at i:69983132 original size:24 final size:25
Alignment explanation
Indices: 69983080--69983240 Score: 93
Period size: 24 Copynumber: 6.6 Consensus size: 25
69983070 AATGACATTG
* * *
69983080 GCACTAAGTGTGCGGATTTTGAATG
1 GCACTATGTGTGCGGATATTGAATA
*
69983105 GCACTATGTGTGTGGA-ATTGAATA
1 GCACTATGTGTGCGGATATTGAATA
*
69983129 GCACTATGTGTGCTGAT-TTGAAT-
1 GCACTATGTGTGCGGATATTGAATA
* * * * *
69983152 GTCAATACGAGTGTGTGGAT-TTCTAA-G
1 G-CACTA--TGTGTGCGGATATT-GAATA
* * * * *
69983179 GCTCTATGTGTGCGGGT-TAGCATG
1 GCACTATGTGTGCGGATATTGAATA
*
69983203 GCACTAAGTGTGCGGAT-TTGAATA
1 GCACTATGTGTGCGGATATTGAATA
69983227 GCACTATGTGTGCG
1 GCACTATGTGTGCG
69983241 AAATCGATTG
Statistics
Matches: 103, Mismatches: 26, Indels: 15
0.72 0.18 0.10
Matches are distributed among these distances:
23 2 0.02
24 71 0.69
25 14 0.14
26 13 0.13
27 3 0.03
ACGTcount: A:0.23, C:0.13, G:0.31, T:0.33
Consensus pattern (25 bp):
GCACTATGTGTGCGGATATTGAATA
Found at i:69990494 original size:25 final size:24
Alignment explanation
Indices: 69990457--69990525 Score: 77
Period size: 24 Copynumber: 2.8 Consensus size: 24
69990447 GAAATGACAT
*
69990457 TGGCACTAAGTGTGCAGATTTTGAA
1 TGGCACTATGTGTGC-GATTTTGAA
*
69990482 TGGCACTATGTGTGCG-TAATTGAA
1 TGGCACTATGTGTGCGAT-TTTGAA
*
69990506 TAGCACTATGTGTGCTGATT
1 TGGCACTATGTGTGC-GATT
69990526 CGAATGTTAA
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
23 1 0.03
24 20 0.54
25 15 0.41
26 1 0.03
ACGTcount: A:0.25, C:0.13, G:0.28, T:0.35
Consensus pattern (24 bp):
TGGCACTATGTGTGCGATTTTGAA
Found at i:69994882 original size:26 final size:26
Alignment explanation
Indices: 69994853--69994907 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
69994843 CATTAACATG
69994853 GAGTTGAAGAGGAAACATGGGAGCCA
1 GAGTTGAAGAGGAAACATGGGAGCCA
69994879 GAGTTGAAGAGGAAACATGGGAGCCA
1 GAGTTGAAGAGGAAACATGGGAGCCA
69994905 GAG
1 GAG
69994908 GATGCAATGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.38, C:0.11, G:0.40, T:0.11
Consensus pattern (26 bp):
GAGTTGAAGAGGAAACATGGGAGCCA
Found at i:69996339 original size:41 final size:41
Alignment explanation
Indices: 69996291--69996397 Score: 112
Period size: 41 Copynumber: 2.6 Consensus size: 41
69996281 ATGTGGTTAT
* *
69996291 GTGTAAGACCACGTCTGGGACATCGACATCGTATTTGA-T-TC
1 GTGTAAGACCACGTCTGGGACAT-GACATCG-ATATGAGTAGC
*
69996332 GTGTAAGACC-CTGTCTGGGACAGTGGCATCGATATGAGGTAGC
1 GTGTAAGACCAC-GTCTGGGACA-TGACATCGATATGA-GTAGC
*
69996375 ATGTAAGACCACGTCTGGGACAT
1 GTGTAAGACCACGTCTGGGACAT
69996398 TGGCATTGTA
Statistics
Matches: 56, Mismatches: 4, Indels: 11
0.79 0.06 0.15
Matches are distributed among these distances:
40 6 0.11
41 26 0.46
42 3 0.05
43 20 0.36
44 1 0.02
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (41 bp):
GTGTAAGACCACGTCTGGGACATGACATCGATATGAGTAGC
Found at i:69996392 original size:43 final size:40
Alignment explanation
Indices: 69996292--69996403 Score: 111
Period size: 43 Copynumber: 2.7 Consensus size: 40
69996282 TGTGGTTATG
* * * *
69996292 TGTAAGACCACGTCTGGGACATCGACATCGTATTTGATTCG
1 TGTAAGACCACGTCTGGGACAT-GGCATCGTATATGATGCA
69996333 TGTAAGACC-CTGTCTGGGACAGTGGCATCG-ATATGAGGTAGCA
1 TGTAAGACCAC-GTCTGGGACA-TGGCATCGTATATGA--T-GCA
69996376 TGTAAGACCACGTCTGGGACATTGGCAT
1 TGTAAGACCACGTCTGGGACA-TGGCAT
69996404 TGTACGATAT
Statistics
Matches: 60, Mismatches: 5, Indels: 10
0.80 0.07 0.13
Matches are distributed among these distances:
40 6 0.10
41 25 0.42
42 2 0.03
43 26 0.43
44 1 0.02
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
TGTAAGACCACGTCTGGGACATGGCATCGTATATGATGCA
Found at i:69998655 original size:50 final size:49
Alignment explanation
Indices: 69998529--69998706 Score: 205
Period size: 50 Copynumber: 3.6 Consensus size: 49
69998519 TAGCCAAGCT
* * * * *
69998529 ATCTGATACGCATAGTAGACTACACTTAGTACTACACATGTGACTAATT
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACTAATC
* * * * *
69998578 ATCCGGTACACGTAGTAACCTGCACTTAGTACTACACACGTGACCTAACC
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CTAATC
* *
69998628 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATTGAAGTC
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACT-AA-TC
69998679 AT-TGAGTACACATAGTAGCCTGCACTTA
1 ATCTGA-TACACATAGTAGCCTGCACTTA
69998707 TTCATCATAT
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
49 36 0.33
50 49 0.45
51 24 0.22
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (49 bp):
ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACTAATC
Found at i:70003657 original size:40 final size:39
Alignment explanation
Indices: 70003593--70003689 Score: 106
Period size: 40 Copynumber: 2.4 Consensus size: 39
70003583 AGCTTCAGTT
* * *
70003593 CATTAGCGGCGCTTCTCGAAAAACGAC-GCTAAAGATCAAA
1 CATTAGCGGCGTTTTTAGAAAAACG-CTGCTAAAGATC-AA
* *
70003633 CATTAGCGGCGTTTTTAGAGAAACGCTGCTATAGATCAA
1 CATTAGCGGCGTTTTTAGAAAAACGCTGCTAAAGATCAA
*
70003672 CCTATAGCGGCGTTTTTA
1 CAT-TAGCGGCGTTTTTA
70003690 CGTAAGCGTC
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
39 5 0.10
40 44 0.90
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.26
Consensus pattern (39 bp):
CATTAGCGGCGTTTTTAGAAAAACGCTGCTAAAGATCAA
Found at i:70004128 original size:22 final size:21
Alignment explanation
Indices: 70004103--70004187 Score: 53
Period size: 21 Copynumber: 3.8 Consensus size: 21
70004093 CCCTAAATTA
70004103 TAAAACTTAAAACTATAAACCC
1 TAAAAC-TAAAACTATAAACCC
* * * *
70004125 TAAATCCAAAACCATAAAACC
1 TAAAACTAAAACTATAAACCC
* * *
70004146 TTAAACTATAGACAATAAACCC
1 TAAAACTA-AAACTATAAACCC
70004168 TTAAACACTTAAATACTATA
1 -TAAA-AC-TAAA-ACTATA
70004188 TAAATCCTAA
Statistics
Matches: 45, Mismatches: 13, Indels: 7
0.69 0.20 0.11
Matches are distributed among these distances:
21 17 0.38
22 15 0.33
23 3 0.07
24 3 0.07
25 7 0.16
ACGTcount: A:0.53, C:0.22, G:0.01, T:0.24
Consensus pattern (21 bp):
TAAAACTAAAACTATAAACCC
Found at i:70009235 original size:232 final size:234
Alignment explanation
Indices: 70008820--70009537 Score: 1181
Period size: 232 Copynumber: 3.0 Consensus size: 234
70008810 ATGAATTAAT
* *
70008820 TTTATTACCATGTACCTTGCTTGTCCATTAAAATTACAACAATAGCTAACCTTCTCTCCAACCTT
1 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACC--
* *
70008885 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCCTATATCGAA
64 ---TT--ATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
70008950 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
124 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
70009015 AAAAAGAGTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATA
189 AAAAAGAGTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATA
70009061 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACC-T
1 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
*
70009125 -TATTTTAAAGATTTAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGTAAG
66 ATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGTAAG
* *
70009189 ATATAATGGATCCTCCCTAGGTGTAACAACTCCATGTATGATGAATCTTAAAAAATTCAAAAAGA
131 ATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGA
70009254 GTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATA
196 GTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATA
70009293 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
1 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACC--
*
70009358 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACTTGACGGGTTGCCTTATATCGAG
64 ---TT--ATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
70009423 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTT-AAAAATTC
124 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
* * * *
70009487 AAAAAGACTTGGAAAAAGCTCTATCGATCTCATTTACTATTGAATA
189 AAAAAGAGTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATA
70009533 TTTAT
1 TTTAT
70009538 ATAACCTTAA
Statistics
Matches: 453, Mismatches: 15, Indels: 19
0.93 0.03 0.04
Matches are distributed among these distances:
232 226 0.50
235 1 0.00
238 1 0.00
240 55 0.12
241 170 0.38
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.33
Consensus pattern (234 bp):
TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
ATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGTAAG
ATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGA
GTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATA
Found at i:70009740 original size:9 final size:9
Alignment explanation
Indices: 70009717--70009883 Score: 147
Period size: 9 Copynumber: 17.6 Consensus size: 9
70009707 ATTGATCATT
*
70009717 ACTTAAATA
1 ACTTACATA
*
70009726 AATTACATA
1 ACTTACATA
70009735 ACTTACATA
1 ACTTACATA
* *
70009744 ACTCATATA
1 ACTTACATA
70009753 ACTTACATA
1 ACTTACATA
70009762 A-TTGACATAACA
1 ACTT-ACAT---A
70009774 ACTTACATA
1 ACTTACATA
*
70009783 ACTCACATA
1 ACTTACATA
70009792 ACTTACATA
1 ACTTACATA
*
70009801 ATTTACATAACA
1 ACTTACAT---A
70009813 ACTTACATA
1 ACTTACATA
*
70009822 ACTCACATA
1 ACTTACATA
70009831 ACTTACATA
1 ACTTACATA
*
70009840 ATTTACATA
1 ACTTACATA
*
70009849 ACTCACATA
1 ACTTACATA
*
70009858 ACGTACATAACA
1 ACTTACAT---A
70009870 ACTTACATA
1 ACTTACATA
70009879 ACTTA
1 ACTTA
70009884 ACTAATACAT
Statistics
Matches: 128, Mismatches: 19, Indels: 22
0.76 0.11 0.13
Matches are distributed among these distances:
8 2 0.02
9 102 0.80
12 22 0.17
13 2 0.02
ACGTcount: A:0.47, C:0.22, G:0.01, T:0.31
Consensus pattern (9 bp):
ACTTACATA
Found at i:70009784 original size:39 final size:39
Alignment explanation
Indices: 70009734--70009850 Score: 216
Period size: 39 Copynumber: 3.0 Consensus size: 39
70009724 TAAATTACAT
* *
70009734 AACTTACATAACTCATATAACTTACATAATTGACATAAC
1 AACTTACATAACTCACATAACTTACATAATTTACATAAC
70009773 AACTTACATAACTCACATAACTTACATAATTTACATAAC
1 AACTTACATAACTCACATAACTTACATAATTTACATAAC
70009812 AACTTACATAACTCACATAACTTACATAATTTACATAAC
1 AACTTACATAACTCACATAACTTACATAATTTACATAAC
70009851 TCACATAACG
Statistics
Matches: 76, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 76 1.00
ACGTcount: A:0.46, C:0.22, G:0.01, T:0.31
Consensus pattern (39 bp):
AACTTACATAACTCACATAACTTACATAATTTACATAAC
Found at i:70009794 original size:57 final size:56
Alignment explanation
Indices: 70009730--70009881 Score: 182
Period size: 57 Copynumber: 2.7 Consensus size: 56
70009720 TAAATAAATT
* * *
70009730 ACATAACTTACATAACT-CAT-ATAACTTACATAATTGACATAACAACTTACATAACTC
1 ACATAACTTACATAACTACATAACAACTTACATAACTCACAT---AACTTACATAACTC
* * *
70009787 ACATAACTTACATAATTTACATAACAACTTACATAACTCACATAACTTACATAATTT
1 ACATAACTTACATAA-CTACATAACAACTTACATAACTCACATAACTTACATAACTC
*
70009844 ACATAACTCACATAACGTACATAACAACTTACATAACT
1 ACATAACTTACATAAC-TACATAACAACTTACATAACT
70009882 TAACTAATAC
Statistics
Matches: 83, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
57 62 0.75
58 1 0.01
59 3 0.04
60 17 0.20
ACGTcount: A:0.46, C:0.23, G:0.01, T:0.30
Consensus pattern (56 bp):
ACATAACTTACATAACTACATAACAACTTACATAACTCACATAACTTACATAACTC
Found at i:70009807 original size:48 final size:47
Alignment explanation
Indices: 70009728--70009883 Score: 186
Period size: 48 Copynumber: 3.3 Consensus size: 47
70009718 CTTAAATAAA
* * *
70009728 TTACATAACTTACATAACTCATATAACTTACATAATTGACATAACAAC
1 TTACATAACTTACATAACTTACATAACTTACATAA-CGACATAACAAC
* * * * *
70009776 TTACATAACTCACATAACTTACATAATTTACATAACAACTTACATAAC
1 TTACATAACTTACATAACTTACATAACTTACATAACGACATA-ACAAC
* * *
70009824 TCACATAACTTACATAATTTACATAACTCACATAACGTACATAACAAC
1 TTACATAACTTACATAACTTACATAACTTACATAACG-ACATAACAAC
70009872 TTACATAACTTA
1 TTACATAACTTA
70009884 ACTAATACAT
Statistics
Matches: 89, Mismatches: 17, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
47 4 0.04
48 81 0.91
49 4 0.04
ACGTcount: A:0.46, C:0.22, G:0.01, T:0.31
Consensus pattern (47 bp):
TTACATAACTTACATAACTTACATAACTTACATAACGACATAACAAC
Found at i:70009879 original size:39 final size:37
Alignment explanation
Indices: 70009717--70009868 Score: 193
Period size: 39 Copynumber: 4.1 Consensus size: 37
70009707 ATTGATCATT
* * *
70009717 ACTTAAATAAATTACAT-AACTTACATAACTCATATA
1 ACTTACATAATTTACATAAACTTACATAACTCACATA
*
70009753 ACTTACATAATTGACATAACAACTTACATAACTCACATA
1 ACTTACATAATTTACAT-A-AACTTACATAACTCACATA
70009792 ACTTACATAATTTACATAACAACTTACATAACTCACATA
1 ACTTACATAATTTACAT-A-AACTTACATAACTCACATA
*
70009831 ACTTACATAATTTACAT-AACTCACATAACGT-ACATA
1 ACTTACATAATTTACATAAACTTACATAAC-TCACATA
70009867 AC
1 AC
70009869 AACTTACATA
Statistics
Matches: 106, Mismatches: 6, Indels: 8
0.88 0.05 0.07
Matches are distributed among these distances:
36 32 0.30
37 1 0.01
39 73 0.69
ACGTcount: A:0.47, C:0.22, G:0.01, T:0.30
Consensus pattern (37 bp):
ACTTACATAATTTACATAAACTTACATAACTCACATA
Found at i:70011732 original size:12 final size:12
Alignment explanation
Indices: 70011715--70011740 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
70011705 ACGATCGAGG
70011715 GATGAATCTGAT
1 GATGAATCTGAT
70011727 GATGAATCTGAT
1 GATGAATCTGAT
70011739 GA
1 GA
70011741 GGAGGATGAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.08, G:0.27, T:0.31
Consensus pattern (12 bp):
GATGAATCTGAT
Found at i:70015455 original size:21 final size:21
Alignment explanation
Indices: 70015417--70015457 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
70015407 ACTTAGAGCG
* *
70015417 GAGGCAGTAGCGCGGGAGGCT
1 GAGGCAGCAGCGAGGGAGGCT
*
70015438 GAGGCAGCAGCGATGGAGGC
1 GAGGCAGCAGCGAGGGAGGC
70015458 GGAGCAGAAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.22, C:0.20, G:0.51, T:0.07
Consensus pattern (21 bp):
GAGGCAGCAGCGAGGGAGGCT
Found at i:70015972 original size:43 final size:43
Alignment explanation
Indices: 70015751--70015985 Score: 247
Period size: 44 Copynumber: 5.3 Consensus size: 43
70015741 ACTTGGCAAA
* ** *
70015751 TTAGTGGCGTTTTTTAAAAAAATGCCGCTAAAAGTCCTGGCCT
1 TTAGCGGCGTTTTTTAAAAAAGCGCCGCTAAAAGTCCTGGTCT
* *
70015794 CTAGCGGCGTTTGTTTGAAAAAGCGCCGCTAAAAGTCCTGGTCT
1 TTAGCGGCGTTT-TTTAAAAAAGCGCCGCTAAAAGTCCTGGTCT
* * * *
70015838 CTAGCAGCGTTTGTTTGAAAAAGCGCCGCTAAAAGTCTTGGTCT
1 TTAGCGGCGTTT-TTTAAAAAAGCGCCGCTAAAAGTCCTGGTCT
* *
70015882 TTAGCGACGTTTTTTCTAAAAAAAGCGCCGCGAAAAGTCCTGGTCT
1 TTAGCGGCG-TTTTT-T-AAAAAAGCGCCGCTAAAAGTCCTGGTCT
* * * * *
70015928 TTAGCGGCGTTCTTTT-AAAAAGTGTCGCTAAAGGTCATGATCT
1 TTAGCGGCGTT-TTTTAAAAAAGCGCCGCTAAAAGTCCTGGTCT
*
70015971 TTAGCGGCATTTTTT
1 TTAGCGGCGTTTTTT
70015986 TTCAAACAAA
Statistics
Matches: 165, Mismatches: 22, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
42 4 0.02
43 41 0.25
44 77 0.47
45 7 0.04
46 36 0.22
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (43 bp):
TTAGCGGCGTTTTTTAAAAAAGCGCCGCTAAAAGTCCTGGTCT
Found at i:70015986 original size:90 final size:90
Alignment explanation
Indices: 70015811--70015985 Score: 237
Period size: 90 Copynumber: 2.0 Consensus size: 90
70015801 CGTTTGTTTG
* *
70015811 AAAAAGCGCCGCTAAAAGTCCTGGTCTCTAGCAGCGTTTGTTTGAAAAAGCGCCGCTAAAAGTCT
1 AAAAAGCGCCGCGAAAAGTCCTGGTCTCTAGCAGCGTTTGTTTGAAAAAGCGCCGCTAAAAGTCA
*
70015876 TGGTCTTTAGCGACGTTTTTTCTAA
66 TGATCTTTAGCGACGTTTTTTCTAA
* * * * *
70015901 AAAAAGCGCCGCGAAAAGTCCTGGTCTTTAGCGGCGTTCT-TTT-AAAAAGTGTCGCTAAAGGTC
1 AAAAAGCGCCGCGAAAAGTCCTGGTCTCTAGCAGCGTT-TGTTTGAAAAAGCGCCGCTAAAAGTC
* *
70015964 ATGATCTTTAGCGGCATTTTTT
65 ATGATCTTTAGCGACGTTTTTT
70015986 TTCAAACAAA
Statistics
Matches: 74, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
89 35 0.47
90 38 0.51
91 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.31
Consensus pattern (90 bp):
AAAAAGCGCCGCGAAAAGTCCTGGTCTCTAGCAGCGTTTGTTTGAAAAAGCGCCGCTAAAAGTCA
TGATCTTTAGCGACGTTTTTTCTAA
Found at i:70022418 original size:27 final size:27
Alignment explanation
Indices: 70022388--70022584 Score: 225
Period size: 27 Copynumber: 7.3 Consensus size: 27
70022378 TACTGAAATG
** *
70022388 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
* * * * *
70022415 CCCTCAATTTATAGAATTACCGTTTCA
1 CCCTCGATTTACAAAATTACCATTTTA
* * *
70022442 CCCTCGATTTGCAAAATTATCGTTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
* *
70022469 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
*
70022496 CCCTCAATTTACAAAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
*
70022523 CTCTCGATTTACAAAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
* * *
70022550 CCCTC-AGTTACAAAATTATCGTTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
70022576 CCCTCGATT
1 CCCTCGATT
70022585 GTGAAATTAC
Statistics
Matches: 144, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
26 23 0.16
27 121 0.84
ACGTcount: A:0.29, C:0.24, G:0.07, T:0.39
Consensus pattern (27 bp):
CCCTCGATTTACAAAATTACCATTTTA
Found at i:70022514 original size:81 final size:81
Alignment explanation
Indices: 70022388--70022580 Score: 253
Period size: 81 Copynumber: 2.4 Consensus size: 81
70022378 TACTGAAATG
* * * * *
70022388 CCCTCGATTTGTAGAATTACCATTTTACCCTCAATTTATAGAATTACCGTTTCACCCTCGATTTG
1 CCCTCGATTTATAGAATTACCATTTTACCCTCAATTTACAAAATTACCATTTCACCCTCGATTTA
* *
70022453 CAAAATTATCGTTTTA
66 CAAAATTACCATTTTA
* *
70022469 CCCTCGATTTATAGAATTACCATTTTACCCTCAATTTACAAAATTACCATTTTACTCTCGATTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCAATTTACAAAATTACCATTTCACCCTCGATTTA
70022534 CAAAATTACCATTTTA
66 CAAAATTACCATTTTA
* * * * *
70022550 CCCTC-AGTTACAAAATTATCGTTTTACCCTC
1 CCCTCGATTTATAGAATTACCATTTTACCCTC
70022581 GATTGTGAAA
Statistics
Matches: 98, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
80 21 0.21
81 77 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (81 bp):
CCCTCGATTTATAGAATTACCATTTTACCCTCAATTTACAAAATTACCATTTCACCCTCGATTTA
CAAAATTACCATTTTA
Found at i:70022646 original size:27 final size:27
Alignment explanation
Indices: 70022616--70022738 Score: 158
Period size: 27 Copynumber: 4.6 Consensus size: 27
70022606 TATAGGATAG
70022616 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
*
70022643 AATTACCAAAATACCCCTTGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * * *
70022670 AATTACCGAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
70022697 AATTACCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
*
70022724 AATTACCAAATTACC
1 AATTACCAAAATACC
70022739 AAATTACCAA
Statistics
Matches: 83, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
26 3 0.04
27 79 0.95
28 1 0.01
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:70022655 original size:54 final size:54
Alignment explanation
Indices: 70022583--70022739 Score: 156
Period size: 54 Copynumber: 2.9 Consensus size: 54
70022573 TTACCCTCGA
* * *
70022583 TTGTGAAATTACTGAAATACCCC-TATAGGATAGAATTACCAAAATACCCCTAGT
1 TTGTGAAATTACCGAAATACCCCTTATAGG-TAAAATTACCAAAATACCACTAGT
* * * ** * *
70022637 TTGTAAAATTACCAAAATACCCCTTGTTTGTAAAATTACCGAAATACCACTGGT
1 TTGTGAAATTACCGAAATACCCCTTATAGGTAAAATTACCAAAATACCACTAGT
* ** *
70022691 TTGTGAAATTACCGAAATA-CCCTCAATTTGTAAAATTACCAAATTACCA
1 TTGTGAAATTACCGAAATACCCCT-TATAGGTAAAATTACCAAAATACCA
70022740 AATTACCAAA
Statistics
Matches: 85, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
53 4 0.05
54 78 0.92
55 3 0.04
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.30
Consensus pattern (54 bp):
TTGTGAAATTACCGAAATACCCCTTATAGGTAAAATTACCAAAATACCACTAGT
Found at i:70022753 original size:9 final size:8
Alignment explanation
Indices: 70022723--70022749 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
70022713 TCAATTTGTA
70022723 AAATTACC
1 AAATTACC
70022731 AAATTACC
1 AAATTACC
70022739 AAATTACC
1 AAATTACC
70022747 AAA
1 AAA
70022750 ATTATAGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.56, C:0.22, G:0.00, T:0.22
Consensus pattern (8 bp):
AAATTACC
Found at i:70032229 original size:39 final size:40
Alignment explanation
Indices: 70032094--70032315 Score: 233
Period size: 40 Copynumber: 5.7 Consensus size: 40
70032084 TTGAATGCTG
* * * * *
70032094 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** *
70032134 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
70032173 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAG-TACTAAA
1 -TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
70032213 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
70032253 TCCGGGTTAAGTCCCGAAGGCA-TTGT--GAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
70032290 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
70032316 AACGAGGAGC
Statistics
Matches: 156, Mismatches: 19, Indels: 16
0.82 0.10 0.08
Matches are distributed among these distances:
37 29 0.19
38 3 0.02
39 37 0.24
40 79 0.51
41 8 0.05
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:70032234 original size:79 final size:78
Alignment explanation
Indices: 70032094--70032315 Score: 245
Period size: 79 Copynumber: 2.8 Consensus size: 78
70032084 TTGAATGCTG
* * * * *
70032094 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGC-GAGT-ACTAAATCCGGGCTAAG-TCCCGAAGGCATT
70032158 TGTGCGAGATA-CAAA
63 TGTGCGAGATATCAAA
* * *
70032173 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGTACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 -TCCGGGTTAAGTCCCGAAGG-CTTTGTGCGAGTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
* *
70032238 GTGCGAGTTATTAAA
64 GTGCGAGATATCAAA
* * *
70032253 TCCGGGTTAAGTCCCGAAGGCATTGT--GAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAG-TACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
70032316 AACGAGGAGC
Statistics
Matches: 122, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
76 3 0.02
77 29 0.24
78 6 0.05
79 52 0.43
80 24 0.20
81 8 0.07
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (78 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGT
GCGAGATATCAAA
Found at i:70032333 original size:77 final size:78
Alignment explanation
Indices: 70032174--70032348 Score: 187
Period size: 77 Copynumber: 2.3 Consensus size: 78
70032164 AGATACAAAT
* * * *
70032174 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGTACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGTTAAGTCCCGAAGGCCATTGT-CGAGTACTAAAACCGGGCTAAGTCCCGAAGGCATTCG
** * *
70032239 TGCGAGTTATTAAA
65 AACGAGTGACTAAA
* *
70032253 TCCGGGTTAAGTCCCGAAGG-CATTGT-GAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCCATTGTCGAG-TACTAAAACCGGGCTAAGTCCCGAAGGCATTCG
*
70032316 AACGAG-GAGCTATA
65 AACGAGTGA-CTAAA
*
70032330 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
70032349 TACGTGATTT
Statistics
Matches: 82, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
76 19 0.23
77 39 0.48
78 5 0.06
79 19 0.23
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (78 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTCGAGTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGA
ACGAGTGACTAAA
Found at i:70033800 original size:6 final size:6
Alignment explanation
Indices: 70033762--70033842 Score: 67
Period size: 6 Copynumber: 13.0 Consensus size: 6
70033752 TTGCATTCAC
* * *
70033762 ATTCTG ATTTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTTTG ATTCT-
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
*
70033811 ATTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
70033843 TCACCTAATT
Statistics
Matches: 60, Mismatches: 8, Indels: 14
0.73 0.10 0.17
Matches are distributed among these distances:
5 5 0.08
6 42 0.70
7 10 0.17
8 3 0.05
ACGTcount: A:0.20, C:0.16, G:0.15, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:70033808 original size:31 final size:31
Alignment explanation
Indices: 70033762--70033872 Score: 141
Period size: 31 Copynumber: 3.5 Consensus size: 31
70033752 TTGCATTCAC
*
70033762 ATTCTGATTTTTGATTCTGTTACCTGATACTG
1 ATTCTGA-TTCTGATTCTGTTACCTGATACTG
* *
70033794 ATTCTGATTTTGATTCTATTACCTGATACTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
* * **
70033825 ATTCTGATTCTGATTCTGTCACCTAATTTTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
*
70033856 ATTCTAATTCTGATTCT
1 ATTCTGATTCTGATTCT
70033873 AACTCTGATA
Statistics
Matches: 71, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
31 64 0.90
32 7 0.10
ACGTcount: A:0.21, C:0.17, G:0.13, T:0.50
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACCTGATACTG
Found at i:70033864 original size:12 final size:12
Alignment explanation
Indices: 70033791--70033881 Score: 60
Period size: 12 Copynumber: 7.4 Consensus size: 12
70033781 TTACCTGATA
*
70033791 CTGATTCTGATT
1 CTGATTCTAATT
*
70033803 TTGATTCT-ATT
1 CTGATTCTAATT
* *
70033814 ACCTGATACTGATT
1 --CTGATTCTAATT
*
70033828 CTGATTCTGATT
1 CTGATTCTAATT
*
70033840 CTG-TCACCTAATT
1 CTGAT--TCTAATT
*
70033853 TTGATTCTAATT
1 CTGATTCTAATT
*
70033865 CTGATTCTAACT
1 CTGATTCTAATT
70033877 CTGAT
1 CTGAT
70033882 AATGTTTCTT
Statistics
Matches: 63, Mismatches: 10, Indels: 12
0.74 0.12 0.14
Matches are distributed among these distances:
11 4 0.06
12 42 0.67
13 13 0.21
14 4 0.06
ACGTcount: A:0.22, C:0.19, G:0.12, T:0.47
Consensus pattern (12 bp):
CTGATTCTAATT
Found at i:70044830 original size:29 final size:29
Alignment explanation
Indices: 70044788--70044843 Score: 94
Period size: 29 Copynumber: 1.9 Consensus size: 29
70044778 TAGTCACTTG
* *
70044788 GGAAACACCAAGCATTAGCACATCTTTTA
1 GGAAACACCAAGCATCAGCACACCTTTTA
70044817 GGAAACACCAAGCATCAGCACACCTTT
1 GGAAACACCAAGCATCAGCACACCTTT
70044844 ATTAATCCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.38, C:0.29, G:0.14, T:0.20
Consensus pattern (29 bp):
GGAAACACCAAGCATCAGCACACCTTTTA
Found at i:70050655 original size:28 final size:28
Alignment explanation
Indices: 70050612--70050686 Score: 125
Period size: 28 Copynumber: 2.7 Consensus size: 28
70050602 TGGCCCCTTT
*
70050612 AGGCCCAATCTCATTCATATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
70050640 -GGCCCCAATCACATTCATATGGCCCATC
1 AGG-CCCAATCACATTCATATGGCCCATC
70050668 AGGCCCAATCACATTCATA
1 AGGCCCAATCACATTCATA
70050687 CTCATGCAAT
Statistics
Matches: 44, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
27 2 0.05
28 40 0.91
29 2 0.05
ACGTcount: A:0.28, C:0.36, G:0.13, T:0.23
Consensus pattern (28 bp):
AGGCCCAATCACATTCATATGGCCCATC
Found at i:70053058 original size:40 final size:40
Alignment explanation
Indices: 70052846--70053051 Score: 344
Period size: 40 Copynumber: 5.2 Consensus size: 40
70052836 AACCCAAGTA
* * *
70052846 CCTTCAGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
70052885 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
70052925 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
70052965 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
70053005 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
70053045 CCTTCGG
1 CCTTCGG
70053052 ATCTTAGTCC
Statistics
Matches: 158, Mismatches: 7, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
39 12 0.08
40 145 0.92
41 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:70054440 original size:13 final size:13
Alignment explanation
Indices: 70054422--70054447 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
70054412 ATTTTTATTT
70054422 TTAACATAAAATA
1 TTAACATAAAATA
70054435 TTAACATAAAATA
1 TTAACATAAAATA
70054448 ATTATAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACATAAAATA
Found at i:70061192 original size:40 final size:40
Alignment explanation
Indices: 70060995--70061185 Score: 339
Period size: 40 Copynumber: 4.8 Consensus size: 40
70060985 AGGATTTAGT
*
70060995 CGGATATAG-CAACTCGCACAAATGCCTTCGGGACTTAGCC
1 CGGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCC
*
70061035 CGGATATAATCACTAGCACAAATGCCTTCGGGACTTAGCC
1 CGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCC
70061075 CGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCC
1 CGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCC
*
70061115 CGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCC
1 CGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCC
70061155 CGGATATAGTCACTAGCACAAATGCCTTCGG
1 CGGATATAGTCACTAGCACAAATGCCTTCGG
70061186 ATCTTAGTCC
Statistics
Matches: 145, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
40 144 0.99
41 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.22
Consensus pattern (40 bp):
CGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCC
Found at i:70062580 original size:13 final size:13
Alignment explanation
Indices: 70062562--70062587 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
70062552 ATTTTTATTT
70062562 TTAACATAAAATA
1 TTAACATAAAATA
70062575 TTAACATAAAATA
1 TTAACATAAAATA
70062588 ATTATAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACATAAAATA
Found at i:70064341 original size:80 final size:80
Alignment explanation
Indices: 70064230--70064389 Score: 311
Period size: 80 Copynumber: 2.0 Consensus size: 80
70064220 TAGTTGCTAG
70064230 AATAAAATAAATGCATTTAGTTAATTTAGTTAGTTTAATTTAACATTTAATGTGTCTTATTTAGT
1 AATAAAATAAATGCATTTAGTTAATTTAGTTAGTTTAATTTAACATTTAATGTGTCTTATTTAGT
70064295 GCATAATTATAATGT
66 GCATAATTATAATGT
*
70064310 AATAAAATAAATGCATTTAGTTAATTTAGTTAGTTTAATTTAACATTTAATGTGTCTTATTTTGT
1 AATAAAATAAATGCATTTAGTTAATTTAGTTAGTTTAATTTAACATTTAATGTGTCTTATTTAGT
70064375 GCATAATTATAATGT
66 GCATAATTATAATGT
70064390 GTTAGGTTTA
Statistics
Matches: 79, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
80 79 1.00
ACGTcount: A:0.37, C:0.05, G:0.11, T:0.47
Consensus pattern (80 bp):
AATAAAATAAATGCATTTAGTTAATTTAGTTAGTTTAATTTAACATTTAATGTGTCTTATTTAGT
GCATAATTATAATGT
Found at i:70066276 original size:28 final size:28
Alignment explanation
Indices: 70066221--70066336 Score: 146
Period size: 28 Copynumber: 4.2 Consensus size: 28
70066211 AGCATGGCTG
** *
70066221 CCAG-AACAGATA-TTGTGATAGAGTCA
1 CCAGAAACAGATATTTGTGGCAGAGCCA
* * *
70066247 CCAGATACAGATAATTGTGGCAGGGCCA
1 CCAGAAACAGATATTTGTGGCAGAGCCA
70066275 CCAGAAACAGATATTTGTGGCAGAGCCA
1 CCAGAAACAGATATTTGTGGCAGAGCCA
* *
70066303 CCAGAAATAGATATTTGTGGCAGATCCA
1 CCAGAAACAGATATTTGTGGCAGAGCCA
70066331 CCAGAA
1 CCAGAA
70066337 CGCTTCCTCC
Statistics
Matches: 78, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
26 4 0.05
27 7 0.09
28 67 0.86
ACGTcount: A:0.36, C:0.20, G:0.24, T:0.20
Consensus pattern (28 bp):
CCAGAAACAGATATTTGTGGCAGAGCCA
Found at i:70068320 original size:12 final size:12
Alignment explanation
Indices: 70068303--70068332 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
70068293 TAAACCTACG
70068303 AAATAATAATAA
1 AAATAATAATAA
70068315 AAATAATAATAA
1 AAATAATAATAA
*
70068327 CAATAA
1 AAATAA
70068333 CATCCAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.73, C:0.03, G:0.00, T:0.23
Consensus pattern (12 bp):
AAATAATAATAA
Found at i:70071065 original size:46 final size:46
Alignment explanation
Indices: 70071012--70071275 Score: 202
Period size: 47 Copynumber: 5.6 Consensus size: 46
70071002 TGTGAGCTAT
*
70071012 TGTAAGACATGTCTGGGACATGCATCGGCCACATTATGA-GAGCCAG
1 TGTAAGACATGTCTGGGACATGCATCGGCCACATGA-GACGAGCCAG
* * *
70071058 TGTAAGACCATGTCTGGGAAATGGCATCGG-CA-TTGAGACGAGGGCTAG
1 TGTAAGA-CATGTCTGGGACAT-GCATCGGCCACATGAGACGA--GCCAG
* * *
70071106 TGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GACACAAGCCAG
1 TGTAAGACATGTCTGGGACATGCATCGGCCAC-ATGAGACGAGCCAG
* * * * * *
70071152 TGTAAGACATGTCTGGGACATGCATAGACTACAAGATGA-TAGTCAG
1 TGTAAGACATGTCTGGGACATGCATCGGCCACATGA-GACGAGCCAG
* *
70071198 TGTAAGACCATGTCTGGGACATGCCATC-G--ACTTGAGATATGAGCCAG
1 TGTAAGA-CATGTCTGGGACATG-CATCGGCCACATGAG--ACGAGCCAG
* *
70071245 CGTAAGACCATGTCTAGGACATGGCATCGGC
1 TGTAAGA-CATGTCTGGGACAT-GCATCGGC
70071276 ACCTTACCCT
Statistics
Matches: 175, Mismatches: 25, Indels: 33
0.75 0.11 0.14
Matches are distributed among these distances:
44 1 0.01
45 7 0.04
46 65 0.37
47 74 0.42
48 28 0.16
ACGTcount: A:0.29, C:0.21, G:0.29, T:0.21
Consensus pattern (46 bp):
TGTAAGACATGTCTGGGACATGCATCGGCCACATGAGACGAGCCAG
Found at i:70071108 original size:48 final size:46
Alignment explanation
Indices: 70071052--70071176 Score: 153
Period size: 46 Copynumber: 2.7 Consensus size: 46
70071042 ACATTATGAG
* *
70071052 AGCCAGTGTAAGACCATGTCTGGGAAATGGCATCGGCATTGAGACGA-G
1 AGCCAGTGTAAGA-CATGTCTGGGAAAT-GCATCGGCATCGAGAC-ACA
* * * *
70071100 GGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACACA
1 AGCCAGTGTAAGACATGTCTGGGAAATGCATCGGCATCGAGACACA
*
70071146 AGCCAGTGTAAGACATGTCTGGGACATGCAT
1 AGCCAGTGTAAGACATGTCTGGGAAATGCAT
70071177 AGACTACAAG
Statistics
Matches: 68, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
45 1 0.01
46 43 0.63
47 13 0.19
48 11 0.16
ACGTcount: A:0.28, C:0.21, G:0.31, T:0.20
Consensus pattern (46 bp):
AGCCAGTGTAAGACATGTCTGGGAAATGCATCGGCATCGAGACACA
Found at i:70071265 original size:140 final size:141
Alignment explanation
Indices: 70071012--70071275 Score: 354
Period size: 140 Copynumber: 1.9 Consensus size: 141
70071002 TGTGAGCTAT
* * **
70071012 TGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTCTGGGA
1 TGTAAGACATGTCTGGGACATGCATAGACCACAAGATGAGAGCCAGTGTAAGACCATGTCTGGGA
* * * * * *
70071077 AATGGCATCGGCATTGAGACGAGGGCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGAG
66 AATGCCATCGACATTGAGACGAGAGCCAGCGTAAGACATGTCTAGGACATGGCATCGGCCTCGAG
70071141 ACACAAGCCAG
131 ACACAAGCCAG
* * *
70071152 TGTAAGACATGTCTGGGACATGCATAGACTACAAGATGATAGTCAGTGTAAGACCATGTCTGGGA
1 TGTAAGACATGTCTGGGACATGCATAGACCACAAGATGAGAGCCAGTGTAAGACCATGTCTGGGA
* *
70071217 CATGCCATCGAC-TTGAGA-TATGAGCCAGCGTAAGACCATGTCTAGGACATGGCATCGGC
66 AATGCCATCGACATTGAGACGA-GAGCCAGCGTAAGA-CATGTCTAGGACATGGCATCGGC
70071276 ACCTTACCCT
Statistics
Matches: 106, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
138 1 0.01
139 17 0.16
140 80 0.75
141 8 0.08
ACGTcount: A:0.29, C:0.21, G:0.29, T:0.21
Consensus pattern (141 bp):
TGTAAGACATGTCTGGGACATGCATAGACCACAAGATGAGAGCCAGTGTAAGACCATGTCTGGGA
AATGCCATCGACATTGAGACGAGAGCCAGCGTAAGACATGTCTAGGACATGGCATCGGCCTCGAG
ACACAAGCCAG
Found at i:70078031 original size:48 final size:45
Alignment explanation
Indices: 70077956--70078080 Score: 128
Period size: 47 Copynumber: 2.7 Consensus size: 45
70077946 TCTCGAGGTC
* * *
70077956 GATGCATGTCCTAGATATGTCTTACACTAGCACTCATCTCAA-T-GCT
1 GATGAATGTCCCAGACATGTCTTACACTAGCACTCA--T-AAGTGGCT
* *
70078002 GATGTAATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCT
1 GATG-AATGTCCCAGACAT-GTCTTACACTAGCACTCATAA-GTGGCT
*
70078050 GATGCATGTCCCAGACATGTCTTACACTAGC
1 GATGAATGTCCCAGACATGTCTTACACTAGC
70078081 TCACAGTAAC
Statistics
Matches: 67, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
45 2 0.03
46 17 0.25
47 25 0.37
48 23 0.34
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (45 bp):
GATGAATGTCCCAGACATGTCTTACACTAGCACTCATAAGTGGCT
Found at i:70082291 original size:28 final size:29
Alignment explanation
Indices: 70082235--70082292 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
70082225 GAATAGTCAC
70082235 TTGGGAAACACCAAGCATCAGCACACCTT
1 TTGGGAAACACCAAGCATCAGCACACCTT
70082264 TTGGGAAACACCAAG-ATCAGCACACCTT
1 TTGGGAAACACCAAGCATCAGCACACCTT
70082292 T
1 T
70082293 ATTAATCCAT
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
28 14 0.48
29 15 0.52
ACGTcount: A:0.34, C:0.29, G:0.17, T:0.19
Consensus pattern (29 bp):
TTGGGAAACACCAAGCATCAGCACACCTT
Found at i:70083855 original size:13 final size:13
Alignment explanation
Indices: 70083837--70083861 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
70083827 AAAGTGCGAG
70083837 CTGTTGAAGACAC
1 CTGTTGAAGACAC
70083850 CTGTTGAAGACA
1 CTGTTGAAGACA
70083862 ATATGCAAAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (13 bp):
CTGTTGAAGACAC
Found at i:70090086 original size:25 final size:27
Alignment explanation
Indices: 70090031--70090086 Score: 62
Period size: 26 Copynumber: 2.1 Consensus size: 27
70090021 AACAAACTTT
**
70090031 TTTTTTTCAACATTCTATTTTTTGTT-
1 TTTTTTTCAACATTCTATTTTAAGTTC
* *
70090057 TTTTTTTTAACTTTCT-TTTTAAGTTC
1 TTTTTTTCAACATTCTATTTTAAGTTC
70090083 TTTT
1 TTTT
70090087 AGGTTGCAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.14, C:0.11, G:0.04, T:0.71
Consensus pattern (27 bp):
TTTTTTTCAACATTCTATTTTAAGTTC
Found at i:70090086 original size:26 final size:27
Alignment explanation
Indices: 70090028--70090086 Score: 68
Period size: 25 Copynumber: 2.3 Consensus size: 27
70090018 CTTAACAAAC
**
70090028 TTTTTTTTTTCAACATTCTATTTTTTG
1 TTTTTTTTTTCAACATTCTATTTTAAG
*
70090055 TTTTTTTTTT-AACTTTCT-TTTTAAG
1 TTTTTTTTTTCAACATTCTATTTTAAG
*
70090080 TTCTTTT
1 TTTTTTT
70090087 AGGTTGCAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 11 0.39
26 7 0.25
27 10 0.36
ACGTcount: A:0.14, C:0.10, G:0.03, T:0.73
Consensus pattern (27 bp):
TTTTTTTTTTCAACATTCTATTTTAAG
Found at i:70092197 original size:16 final size:17
Alignment explanation
Indices: 70092176--70092209 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
70092166 AAGTATGCCA
70092176 AGGGATA-CTATCCACC
1 AGGGATAGCTATCCACC
*
70092192 AGGGATAGGTATCCACC
1 AGGGATAGCTATCCACC
70092209 A
1 A
70092210 TTATTATATG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.32, C:0.26, G:0.24, T:0.18
Consensus pattern (17 bp):
AGGGATAGCTATCCACC
Found at i:70095318 original size:29 final size:29
Alignment explanation
Indices: 70095246--70095357 Score: 120
Period size: 29 Copynumber: 3.9 Consensus size: 29
70095236 ACCCCTACAT
* *
70095246 ACATGCATATAGCCCACTAGGCCCAA-TC
1 ACATTCATATGGCCCACTAGGCCCAATTC
** * *
70095274 TTATTCAAATGACCCATCT-GGCCCAATTC
1 ACATTCATATGGCCCA-CTAGGCCCAATTC
*
70095303 ACATTCATATGGCCCACTAAGCCCAATTC
1 ACATTCATATGGCCCACTAGGCCCAATTC
* *
70095332 ACATTCATATGGCCCATTAGGGCCAA
1 ACATTCATATGGCCCACTAGGCCCAA
70095358 ATCATATTAT
Statistics
Matches: 67, Mismatches: 14, Indels: 5
0.78 0.16 0.06
Matches are distributed among these distances:
28 19 0.28
29 48 0.72
ACGTcount: A:0.30, C:0.32, G:0.13, T:0.24
Consensus pattern (29 bp):
ACATTCATATGGCCCACTAGGCCCAATTC
Found at i:70095483 original size:19 final size:19
Alignment explanation
Indices: 70095447--70095483 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
70095437 CAACTCATTA
*
70095447 GGCCCATTTAGCCCATTCC
1 GGCCCATTTAGCCAATTCC
*
70095466 GGCCCATTTGGCCAATTC
1 GGCCCATTTAGCCAATTC
70095484 TCAACCCAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.16, C:0.38, G:0.19, T:0.27
Consensus pattern (19 bp):
GGCCCATTTAGCCAATTCC
Found at i:70099865 original size:24 final size:24
Alignment explanation
Indices: 70099838--70099886 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
70099828 ATCTCATGGT
70099838 AACCATTACATCTTCTTTCATAAA
1 AACCATTACATCTTCTTTCATAAA
70099862 AACCATTACATCTTCTTTCATAAA
1 AACCATTACATCTTCTTTCATAAA
70099886 A
1 A
70099887 GTCAATTACA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (24 bp):
AACCATTACATCTTCTTTCATAAA
Found at i:70102799 original size:22 final size:21
Alignment explanation
Indices: 70102768--70102810 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
70102758 GTGATCATTT
70102768 GAAAAAGTAAAATTCAAGATA
1 GAAAAAGTAAAATTCAAGATA
* *
70102789 GAAAAACGTAAACTTTAAGATA
1 GAAAAA-GTAAAATTCAAGATA
70102811 TTATGTGATG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.58, C:0.07, G:0.14, T:0.21
Consensus pattern (21 bp):
GAAAAAGTAAAATTCAAGATA
Found at i:70104844 original size:19 final size:19
Alignment explanation
Indices: 70104817--70104884 Score: 77
Period size: 19 Copynumber: 3.6 Consensus size: 19
70104807 GTAAGGGTTA
*
70104817 ATTTTAATTTTTGAATATT
1 ATTTAAATTTTTGAATATT
**
70104836 ATTTAAATTTTTTTCAT-TT
1 ATTTAAA-TTTTTGAATATT
*
70104855 ATGT-AATTTTTGAATATT
1 ATTTAAATTTTTGAATATT
70104873 ATTTAAATTTTT
1 ATTTAAATTTTT
70104885 TTCATTTATG
Statistics
Matches: 39, Mismatches: 7, Indels: 6
0.75 0.13 0.12
Matches are distributed among these distances:
17 7 0.18
18 7 0.18
19 18 0.46
20 7 0.18
ACGTcount: A:0.31, C:0.01, G:0.04, T:0.63
Consensus pattern (19 bp):
ATTTAAATTTTTGAATATT
Found at i:70104846 original size:18 final size:18
Alignment explanation
Indices: 70104819--70104883 Score: 60
Period size: 18 Copynumber: 3.6 Consensus size: 18
70104809 AAGGGTTAAT
*
70104819 TTTAATTTTTGAATATTA
1 TTTAAATTTTGAATATTA
**
70104837 TTTAAATTTT-TTTCATTTA
1 TTTAAATTTTGAAT-A-TTA
* *
70104856 TGTAATTTTTGAATATTA
1 TTTAAATTTTGAATATTA
70104874 TTTAAATTTT
1 TTTAAATTTT
70104884 TTTCATTTAT
Statistics
Matches: 35, Mismatches: 9, Indels: 6
0.70 0.18 0.12
Matches are distributed among these distances:
17 1 0.03
18 21 0.60
19 12 0.34
20 1 0.03
ACGTcount: A:0.31, C:0.02, G:0.05, T:0.63
Consensus pattern (18 bp):
TTTAAATTTTGAATATTA
Found at i:70104871 original size:37 final size:37
Alignment explanation
Indices: 70104821--70104901 Score: 162
Period size: 37 Copynumber: 2.2 Consensus size: 37
70104811 GGGTTAATTT
70104821 TAATTTTTGAATATTATTTAAATTTTTTTCATTTATG
1 TAATTTTTGAATATTATTTAAATTTTTTTCATTTATG
70104858 TAATTTTTGAATATTATTTAAATTTTTTTCATTTATG
1 TAATTTTTGAATATTATTTAAATTTTTTTCATTTATG
70104895 TAATTTT
1 TAATTTT
70104902 AATTAATTTG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 44 1.00
ACGTcount: A:0.30, C:0.02, G:0.05, T:0.63
Consensus pattern (37 bp):
TAATTTTTGAATATTATTTAAATTTTTTTCATTTATG
Found at i:70104893 original size:19 final size:19
Alignment explanation
Indices: 70104834--70104893 Score: 70
Period size: 19 Copynumber: 3.2 Consensus size: 19
70104824 TTTTTGAATA
70104834 TTATTTAAATTTTTTTCAT
1 TTATTTAAATTTTTTTCAT
* **
70104853 TTATGT-AA-TTTTTGAAT
1 TTATTTAAATTTTTTTCAT
70104870 ATTATTTAAATTTTTTTCAT
1 -TTATTTAAATTTTTTTCAT
70104890 TTAT
1 TTAT
70104894 GTAATTTTAA
Statistics
Matches: 32, Mismatches: 6, Indels: 6
0.73 0.14 0.14
Matches are distributed among these distances:
17 7 0.22
18 7 0.22
19 11 0.34
20 7 0.22
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.65
Consensus pattern (19 bp):
TTATTTAAATTTTTTTCAT
Found at i:70104899 original size:18 final size:18
Alignment explanation
Indices: 70104841--70104901 Score: 70
Period size: 18 Copynumber: 3.3 Consensus size: 18
70104831 ATATTATTTA
70104841 AATTTTTTTCATTTATGT
1 AATTTTTTTCATTTATGT
** *
70104859 AA-TTTTTGAATATTATTT
1 AATTTTTTTCAT-TTATGT
70104877 AAATTTTTTTCATTTATGT
1 -AATTTTTTTCATTTATGT
70104896 AATTTT
1 AATTTT
70104902 AATTAATTTG
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
17 7 0.21
18 13 0.38
19 7 0.21
20 7 0.21
ACGTcount: A:0.28, C:0.03, G:0.05, T:0.64
Consensus pattern (18 bp):
AATTTTTTTCATTTATGT
Found at i:70110276 original size:15 final size:15
Alignment explanation
Indices: 70110256--70110289 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
70110246 TCCATCCAAA
70110256 TTATTCCTTTAAAAG
1 TTATTCCTTTAAAAG
70110271 TTATTCCTTTAAAAG
1 TTATTCCTTTAAAAG
70110286 TTAT
1 TTAT
70110290 CTTATTTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.32, C:0.12, G:0.06, T:0.50
Consensus pattern (15 bp):
TTATTCCTTTAAAAG
Found at i:70115798 original size:39 final size:39
Alignment explanation
Indices: 70115744--70115820 Score: 136
Period size: 39 Copynumber: 2.0 Consensus size: 39
70115734 TTTAGTTTGT
**
70115744 GTCTTTATTTATGTCATAGTTTGAACATCATTAATATGA
1 GTCTTTAACTATGTCATAGTTTGAACATCATTAATATGA
70115783 GTCTTTAACTATGTCATAGTTTGAACATCATTAATATG
1 GTCTTTAACTATGTCATAGTTTGAACATCATTAATATG
70115821 TGTTCTGCAT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.31, C:0.12, G:0.13, T:0.44
Consensus pattern (39 bp):
GTCTTTAACTATGTCATAGTTTGAACATCATTAATATGA
Found at i:70119332 original size:39 final size:40
Alignment explanation
Indices: 70119287--70119454 Score: 106
Period size: 40 Copynumber: 4.2 Consensus size: 40
70119277 CGGGGTTTAG
* * *
70119287 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
70119326 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
70119366 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
70119406 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
70119447 CCGGATAT
1 CCGGATAT
70119455 CATTCGAGTA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 18 0.17
40 61 0.56
41 27 0.25
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:70119437 original size:41 final size:40
Alignment explanation
Indices: 70119310--70119454 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
70119300 CTCGCACAAG
* * * * *
70119310 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
70119350 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
70119390 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
70119431 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
70119455 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:70120683 original size:38 final size:38
Alignment explanation
Indices: 70120641--70120716 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
70120631 CAAGAACTCC
70120641 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
70120679 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
70120717 AAAGGATGAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.32
Consensus pattern (38 bp):
TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
Found at i:70127405 original size:39 final size:40
Alignment explanation
Indices: 70127360--70127527 Score: 106
Period size: 40 Copynumber: 4.2 Consensus size: 40
70127350 CGGGGTTTAG
* * *
70127360 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
70127399 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
70127439 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
70127479 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
70127520 CCGGATAT
1 CCGGATAT
70127528 CATTCGAGTA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 18 0.17
40 61 0.56
41 27 0.25
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:70127510 original size:41 final size:40
Alignment explanation
Indices: 70127383--70127527 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
70127373 CTCGCACAAG
* * * * *
70127383 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
70127423 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
70127463 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
70127504 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
70127528 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:70129295 original size:18 final size:18
Alignment explanation
Indices: 70129272--70129315 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
70129262 ATGCCAAGTG
*
70129272 TGTATCCTAGCCCTTATA
1 TGTATCCTAACCCTTATA
70129290 TGTATCCTAACCCTTATA
1 TGTATCCTAACCCTTATA
*
70129308 TGTTTCCT
1 TGTATCCT
70129316 TTTCCCAATC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.20, C:0.27, G:0.09, T:0.43
Consensus pattern (18 bp):
TGTATCCTAACCCTTATA
Found at i:70129761 original size:24 final size:23
Alignment explanation
Indices: 70129734--70129790 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 23
70129724 CTTTTAATAA
*
70129734 AATAAAAGTTGTTTTTAATATT-TT
1 AATAAAA-TTATTTTT-ATATTATT
70129758 AATAGTAAATTATTTTTATATTATT
1 AATA--AAATTATTTTTATATTATT
70129783 AATAAAAT
1 AATAAAAT
70129791 AGAAGTTCTT
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
23 4 0.14
24 9 0.31
25 13 0.45
26 3 0.10
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (23 bp):
AATAAAATTATTTTTATATTATT
Found at i:70141529 original size:49 final size:48
Alignment explanation
Indices: 70141452--70141563 Score: 120
Period size: 49 Copynumber: 2.3 Consensus size: 48
70141442 AGAAATTTCA
* * * *
70141452 GCACTATGTGTGCGTGGTTATGCGGCACTACGTGTGC-A-AAAACTACATG
1 GCACTATGTGTGCGAGATTATACAGCACTACGTGTGCGAGAAAAC-AC--G
* * *
70141501 GCACTATGTGTGCGAGATTATATAGCACTATGTGTGCGAGGAAACACG
1 GCACTATGTGTGCGAGATTATACAGCACTACGTGTGCGAGAAAACACG
70141549 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
70141564 ATGAGTAAGA
Statistics
Matches: 54, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
48 16 0.30
49 31 0.57
50 3 0.06
51 4 0.07
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (48 bp):
GCACTATGTGTGCGAGATTATACAGCACTACGTGTGCGAGAAAACACG
Found at i:70147558 original size:125 final size:125
Alignment explanation
Indices: 70147312--70147683 Score: 433
Period size: 125 Copynumber: 3.0 Consensus size: 125
70147302 GGCCAAACAT
** * * * *
70147312 GAACTACTATAGAAAAAGAGCGTCCATGTGGGAGCTTTTTTCAGAAATTTTGCTGATAATGCATG
1 GAACTACCGTAGAAAAAGAGCTTCCATGTGGGAGCTTTTTTCAGTAATTTTACTGATAATGCATC
* ** * * *
70147377 CTGCTTGAAGCATTTTTTATGCTAATT-TTCAGAAATGTCTTCTGAAAATTATTTTTTCAG
66 CTGCTTGAAGCATTTTTAACACTATTTGTTCAGAAATGTCTTCTCAAAATTA-TTTTTCAA
* ** * * * * *
70147437 GAGCTATTGTAGAAAAATAGCTTCCATGTGGGAGCATTTTTCAGTACTTTTACTGACAGTGCATC
1 GAACTACCGTAGAAAAAGAGCTTCCATGTGGGAGCTTTTTTCAGTAATTTTACTGATAATGCATC
* * * **
70147502 CTGCTTAAAGCATTTTTGACACTATTTGTTCAAAAACATCTTCTCAAAATTATTTTTCAA
66 CTGCTTGAAGCATTTTTAACACTATTTGTTCAGAAATGTCTTCTCAAAATTATTTTTCAA
* * *
70147562 GAACTACCGTAGAAAAAGAGCGTT-TACGTGTGAGCTTTTTTCAGTAATTTTACTGATAATGCAT
1 GAACTACCGTAGAAAAAGAGC-TTCCATGTGGGAGCTTTTTTCAGTAATTTTACTGATAATGCAT
** *
70147626 CCTTTTTGAAGCGTTTTTAACACTATTTGTTCAGAAATGTCTTCTCAAAATTATTTTT
65 CCTGCTTGAAGCATTTTTAACACTATTTGTTCAGAAATGTCTTCTCAAAATTATTTTT
70147684 TTCAAGGTAA
Statistics
Matches: 204, Mismatches: 41, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
125 182 0.89
126 22 0.11
ACGTcount: A:0.30, C:0.15, G:0.16, T:0.39
Consensus pattern (125 bp):
GAACTACCGTAGAAAAAGAGCTTCCATGTGGGAGCTTTTTTCAGTAATTTTACTGATAATGCATC
CTGCTTGAAGCATTTTTAACACTATTTGTTCAGAAATGTCTTCTCAAAATTATTTTTCAA
Found at i:70147856 original size:35 final size:34
Alignment explanation
Indices: 70147747--70147864 Score: 131
Period size: 34 Copynumber: 3.6 Consensus size: 34
70147737 TGAAAAAACT
70147747 AAACCCTAATTTAATTAA--T-TTT--AACCCT-
1 AAACCCTAATTTAATTAATTTATTTAAAACCCTA
** * *
70147775 AAACATTAATTTAATTAATTTATTTAAAACTCTT
1 AAACCCTAATTTAATTAATTTATTTAAAACCCTA
* *
70147809 AAACCCTTATTTACTTAATTTATTTAAAACCCATA
1 AAACCCTAATTTAATTAATTTATTTAAAACCC-TA
70147844 AAACCCTAATTTAATTAATTT
1 AAACCCTAATTTAATTAATTT
70147865 TTAAAAAAGA
Statistics
Matches: 72, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
28 16 0.22
30 1 0.01
31 3 0.04
33 5 0.07
34 27 0.38
35 20 0.28
ACGTcount: A:0.42, C:0.16, G:0.00, T:0.42
Consensus pattern (34 bp):
AAACCCTAATTTAATTAATTTATTTAAAACCCTA
Found at i:70147998 original size:24 final size:24
Alignment explanation
Indices: 70147957--70148004 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
70147947 TTATTTTAAT
* * * *
70147957 AAAACCTTAACCTTAAAAATCCTA
1 AAAACCCTAAACTAAAAAAGCCTA
70147981 AAAACCCTAAACTAAAAAAGCCTA
1 AAAACCCTAAACTAAAAAAGCCTA
70148005 GGGACTAAAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.54, C:0.25, G:0.02, T:0.19
Consensus pattern (24 bp):
AAAACCCTAAACTAAAAAAGCCTA
Found at i:70148698 original size:88 final size:88
Alignment explanation
Indices: 70148549--70148727 Score: 358
Period size: 88 Copynumber: 2.0 Consensus size: 88
70148539 CCATTTTTTT
70148549 AAATAAATTGACTAGGTATTTTAGCAAATTAAATAAGAACAATTGAGACCCAAAAAAACAAACCA
1 AAATAAATTGACTAGGTATTTTAGCAAATTAAATAAGAACAATTGAGACCCAAAAAAACAAACCA
70148614 TTGGGCTCAGACCTACTAAAGCA
66 TTGGGCTCAGACCTACTAAAGCA
70148637 AAATAAATTGACTAGGTATTTTAGCAAATTAAATAAGAACAATTGAGACCCAAAAAAACAAACCA
1 AAATAAATTGACTAGGTATTTTAGCAAATTAAATAAGAACAATTGAGACCCAAAAAAACAAACCA
70148702 TTGGGCTCAGACCTACTAAAGCA
66 TTGGGCTCAGACCTACTAAAGCA
70148725 AAA
1 AAA
70148728 CAAAAGTATC
Statistics
Matches: 91, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
88 91 1.00
ACGTcount: A:0.49, C:0.17, G:0.13, T:0.21
Consensus pattern (88 bp):
AAATAAATTGACTAGGTATTTTAGCAAATTAAATAAGAACAATTGAGACCCAAAAAAACAAACCA
TTGGGCTCAGACCTACTAAAGCA
Found at i:70158033 original size:23 final size:23
Alignment explanation
Indices: 70158002--70158047 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
70157992 TTCGAAACCA
* *
70158002 AAAATAAAATCGTTCTCTACTTT
1 AAAACAAAACCGTTCTCTACTTT
*
70158025 AAAACAAAACCGTTCTTTACTTT
1 AAAACAAAACCGTTCTCTACTTT
70158048 TTCTTTTCAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.39, C:0.20, G:0.04, T:0.37
Consensus pattern (23 bp):
AAAACAAAACCGTTCTCTACTTT
Found at i:70158093 original size:16 final size:17
Alignment explanation
Indices: 70158068--70158100 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
70158058 AAGACGTAAG
*
70158068 AAAAGCCAAA-AAGAAA
1 AAAAGACAAAGAAGAAA
70158084 AAAAGACAAAGAAGAAA
1 AAAAGACAAAGAAGAAA
70158101 GCTAAGATGG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.76, C:0.09, G:0.15, T:0.00
Consensus pattern (17 bp):
AAAAGACAAAGAAGAAA
Found at i:70158172 original size:12 final size:12
Alignment explanation
Indices: 70158138--70158164 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
70158128 ACGTGAAAAA
70158138 TAAAATAAATAT
1 TAAAATAAATAT
70158150 TAAAATAAATAT
1 TAAAATAAATAT
70158162 TAA
1 TAA
70158165 GAAAAATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
TAAAATAAATAT
Found at i:70159159 original size:16 final size:16
Alignment explanation
Indices: 70159138--70159176 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
70159128 TAATGTTATT
70159138 CAGGCTTTGTGCCTAG
1 CAGGCTTTGTGCCTAG
*
70159154 CAGGCTTTGTGCTTAG
1 CAGGCTTTGTGCCTAG
*
70159170 CAAGCTT
1 CAGGCTT
70159177 AGTTCCAGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.15, C:0.23, G:0.28, T:0.33
Consensus pattern (16 bp):
CAGGCTTTGTGCCTAG
Found at i:70159215 original size:38 final size:38
Alignment explanation
Indices: 70159157--70159231 Score: 98
Period size: 38 Copynumber: 2.0 Consensus size: 38
70159147 TGCCTAGCAG
* * *
70159157 GCTTTGTGCTTAGCAAGCTTAGT-TCCAGTGTTATTCAA
1 GCTTTGTGCCTAACAAGCTTAGTGT-CAATGTTATTCAA
*
70159195 GCTTTGTGCCTAACAGGCTTAGTGTCAATGTTATTCA
1 GCTTTGTGCCTAACAAGCTTAGTGTCAATGTTATTCA
70159232 GGATTAGTGA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
38 31 0.97
39 1 0.03
ACGTcount: A:0.21, C:0.19, G:0.21, T:0.39
Consensus pattern (38 bp):
GCTTTGTGCCTAACAAGCTTAGTGTCAATGTTATTCAA
Found at i:70159238 original size:22 final size:22
Alignment explanation
Indices: 70159208--70159253 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
70159198 TTGTGCCTAA
* *
70159208 CAGGCTTAGTGTCAATGTTATT
1 CAGGATTAGTGACAATGTTATT
*
70159230 CAGGATTAGTGACAGTGTTATT
1 CAGGATTAGTGACAATGTTATT
70159252 CA
1 CA
70159254 AGCTTTGTGC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.26, C:0.13, G:0.24, T:0.37
Consensus pattern (22 bp):
CAGGATTAGTGACAATGTTATT
Found at i:70159272 original size:60 final size:60
Alignment explanation
Indices: 70159182--70159300 Score: 202
Period size: 60 Copynumber: 2.0 Consensus size: 60
70159172 AGCTTAGTTC
70159182 CAGTGTTATTCAAGCTTTGTGCCTAACAGGCTTAGTGTCAATGTTATTCAGGATTAGTGA
1 CAGTGTTATTCAAGCTTTGTGCCTAACAGGCTTAGTGTCAATGTTATTCAGGATTAGTGA
* * * *
70159242 CAGTGTTATTCAAGCTTTGTGCCTAGCAGGCTTAGTGTCGATGTTATTTAGGCTTAGTG
1 CAGTGTTATTCAAGCTTTGTGCCTAACAGGCTTAGTGTCAATGTTATTCAGGATTAGTG
70159301 CCTTGCAGGC
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
60 55 1.00
ACGTcount: A:0.22, C:0.15, G:0.25, T:0.38
Consensus pattern (60 bp):
CAGTGTTATTCAAGCTTTGTGCCTAACAGGCTTAGTGTCAATGTTATTCAGGATTAGTGA
Found at i:70168531 original size:43 final size:42
Alignment explanation
Indices: 70168475--70168642 Score: 171
Period size: 43 Copynumber: 4.0 Consensus size: 42
70168465 ATATCGTACA
* *
70168475 ATGCCAACGTCCCAGACGTGGTCTTACATGCAATCACATATTG
1 ATGCCAATGTCCCAGACGTGGTCTTACACG-AATCACATATTG
** * * * *
70168518 ATGCCGCTATCCCAGATAG-GGTCTTACACGAATCAAATA-CG
1 ATGCCAATGTCCCAGA-CGTGGTCTTACACGAATCACATATTG
* *
70168559 ATGCCAATGTCCCCA-ACATGGTCTTACACATAATCACATATTG
1 ATGCCAATGT-CCCAGACGTGGTCTTACAC-GAATCACATATTG
*
70168602 ATGCCAATGTCCCAGACGTGGTCTTACACGAAAACACATAT
1 ATGCCAATGTCCCAGACGTGGTCTTACACG-AATCACATAT
70168643 CGAAAATCTT
Statistics
Matches: 99, Mismatches: 19, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
41 19 0.19
42 24 0.24
43 55 0.56
44 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACGTGGTCTTACACGAATCACATATTG
Found at i:70168616 original size:84 final size:84
Alignment explanation
Indices: 70168475--70168633 Score: 205
Period size: 84 Copynumber: 1.9 Consensus size: 84
70168465 ATATCGTACA
* ** **
70168475 ATGCCAACGTCCCAGACGTGGTCTTACATGCAATCACATATTGATGCCGCTATCCCAGATAG-GG
1 ATGCCAACGTCCCAGACATGGTCTTACACACAATCACATATTGATGCCAATATCCCAGA-AGTGG
70168539 TCTTACACGAATCAAATACG
65 TCTTACACGAATCAAATACG
* * * *
70168559 ATGCCAATGTCCCCA-ACATGGTCTTACACATAATCACATATTGATGCCAATGTCCCAGACGTGG
1 ATGCCAACGT-CCCAGACATGGTCTTACACACAATCACATATTGATGCCAATATCCCAGAAGTGG
70168623 TCTTACACGAA
65 TCTTACACGAA
70168634 AACACATATC
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
83 1 0.02
84 59 0.92
85 4 0.06
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.25
Consensus pattern (84 bp):
ATGCCAACGTCCCAGACATGGTCTTACACACAATCACATATTGATGCCAATATCCCAGAAGTGGT
CTTACACGAATCAAATACG
Found at i:70169536 original size:21 final size:21
Alignment explanation
Indices: 70169495--70169536 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
70169485 TGACTTACTT
*
70169495 ACACGGCTACAAGAAATGCTC
1 ACACGGCTACAAGAAACGCTC
*
70169516 ACACGGCTACAAGACACGCTC
1 ACACGGCTACAAGAAACGCTC
70169537 GTGTGCCGTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.36, C:0.33, G:0.19, T:0.12
Consensus pattern (21 bp):
ACACGGCTACAAGAAACGCTC
Found at i:70170193 original size:10 final size:10
Alignment explanation
Indices: 70170178--70170205 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
70170168 ATAGTGTGGA
70170178 GACAATCCTC
1 GACAATCCTC
70170188 GACAATCCTC
1 GACAATCCTC
70170198 GACAATCC
1 GACAATCC
70170206 CCAAGCTCAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.32, C:0.39, G:0.11, T:0.18
Consensus pattern (10 bp):
GACAATCCTC
Found at i:70175900 original size:46 final size:46
Alignment explanation
Indices: 70175671--70175900 Score: 370
Period size: 46 Copynumber: 5.0 Consensus size: 46
70175661 TTTCTTTCAT
** * * *
70175671 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
* ** *
70175717 GTTGCCATAGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
*
70175763 GTTGCCATGGTATTTTTCAACCATGGTCTTACACATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
70175809 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
70175855 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
70175901 AGAGCACACT
Statistics
Matches: 175, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 175 1.00
ACGTcount: A:0.23, C:0.23, G:0.14, T:0.40
Consensus pattern (46 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
Found at i:70175900 original size:92 final size:92
Alignment explanation
Indices: 70175623--70175900 Score: 378
Period size: 92 Copynumber: 3.0 Consensus size: 92
70175613 TTTGACATAA
* * * *
70175623 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTCATTTTC-TTTCATGTTGCCATGGTATCTT
1 TGCCATAGTATCTTTCAACCATGGTCTTA--CA--CA-TTTCATATCACGTTGCCATGGTATCTT
** * * *
70175687 TCAACCATGGTCTTATTCTTTTCATGTCACGT
61 TCAACCATGGTCTTACACATTTCATATCAGGT
** *
70175719 TGCCATAGTATCTTTCAACCATGGTCTTATTCATTTCATATCACGTTGCCATGGTATTTTTCAAC
1 TGCCATAGTATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATGGTATCTTTCAAC
70175784 CATGGTCTTACACATTTCATATCAGGT
66 CATGGTCTTACACATTTCATATCAGGT
* *
70175811 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
1 TGCCATAGTATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATGGTATCTTTCAAC
70175876 CATGGTCTTACACATTTCATATCAG
66 CATGGTCTTACACATTTCATATCAG
70175901 AGAGCACACT
Statistics
Matches: 164, Mismatches: 17, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
91 4 0.02
92 133 0.81
96 27 0.16
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.41
Consensus pattern (92 bp):
TGCCATAGTATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATGGTATCTTTCAAC
CATGGTCTTACACATTTCATATCAGGT
Found at i:70184596 original size:55 final size:52
Alignment explanation
Indices: 70184443--70184644 Score: 162
Period size: 55 Copynumber: 3.8 Consensus size: 52
70184433 ATTAGGGTTT
* * *
70184443 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGTC-AGACATGGCAA-TGGTAA-GTTTATAAGGC
* * * *
70184498 AAGGATATCATGTAAGACCATGTCAGGACATGACATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCA-GACATGGCAATGGTAAGTT--TATAAGGC
* *
70184553 AAAGG-TCCCATGTAAGACCATGTCGAGACATGGCAATGGTAAGTTT-CAA---
1 -AAGGATACCATGTAAGACCATGTC-AGACATGGCAATGGTAAGTTTATAAGGC
* * * * *
70184602 AAGGATTCCACGTAAGGCCATGACAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGTC-AGACATGGCAATGGTAAG
70184645 GTACTCGTGT
Statistics
Matches: 122, Mismatches: 19, Indels: 18
0.77 0.12 0.11
Matches are distributed among these distances:
48 4 0.03
49 32 0.26
52 2 0.02
53 4 0.03
54 6 0.05
55 69 0.57
56 5 0.04
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.22
Consensus pattern (52 bp):
AAGGATACCATGTAAGACCATGTCAGACATGGCAATGGTAAGTTTATAAGGC
Found at i:70184739 original size:23 final size:24
Alignment explanation
Indices: 70184713--70184759 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 24
70184703 AAGGTAAGGT
*
70184713 AAGGTAAGACGAGTT-ATACTAAA
1 AAGGTAAGACAAGTTCATACTAAA
*
70184736 AAGGTAAGACAAGTTCATGCTAAA
1 AAGGTAAGACAAGTTCATACTAAA
70184760 GAGCAAAGGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 14 0.67
24 7 0.33
ACGTcount: A:0.47, C:0.11, G:0.21, T:0.21
Consensus pattern (24 bp):
AAGGTAAGACAAGTTCATACTAAA
Found at i:70193193 original size:29 final size:29
Alignment explanation
Indices: 70193160--70193233 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
70193150 GTTGTGAGAT
* *
70193160 TGGCACTAGGTGTGCGAACTTGAAA-TGCA
1 TGGCACTAAGTGTGCG-ACTTGAAAGTACA
* *
70193189 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGACTTGAAAGTACA
70193218 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
70193234 CGGTTGATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 6 0.15
29 34 0.85
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGACTTGAAAGTACA
Found at i:70201041 original size:55 final size:53
Alignment explanation
Indices: 70200954--70201155 Score: 207
Period size: 55 Copynumber: 3.8 Consensus size: 53
70200944 ATTAGGGTTT
* * * *
70200954 AAGGATACCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAA-TGATAA-GTTTCTAAGGC
* * *
70201009 AAGGATATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGATAAGTT--TCTAAGGC
* *
70201064 AAAGG-TCCCATGTAAGACCATGTCGAGACATGGCAATGATAAGTTTC-AA---
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGATAAGTTTCTAAGGC
* * * *
70201113 AAGGATACCAAGTAAGACCATGACAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGATAAG
70201156 GTACTCGTGT
Statistics
Matches: 125, Mismatches: 18, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
48 4 0.03
49 32 0.26
52 2 0.02
53 4 0.03
54 5 0.04
55 74 0.59
56 4 0.03
ACGTcount: A:0.38, C:0.16, G:0.24, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGATAAGTTTCTAAGGC
Found at i:70201368 original size:16 final size:16
Alignment explanation
Indices: 70201347--70201377 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
70201337 ATAAATTTGA
70201347 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
70201363 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
70201378 AGTGAATAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:70201400 original size:19 final size:19
Alignment explanation
Indices: 70201376--70201415 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
70201366 AGTAAGTGAG
*
70201376 TAAGTGAATAAGTTTAAAA
1 TAAGTGAAGAAGTTTAAAA
70201395 TAAGTGAAGAAGTTTAAAA
1 TAAGTGAAGAAGTTTAAAA
70201414 TA
1 TA
70201416 TGTCTATAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.53, C:0.00, G:0.17, T:0.30
Consensus pattern (19 bp):
TAAGTGAAGAAGTTTAAAA
Found at i:70219853 original size:32 final size:32
Alignment explanation
Indices: 70219817--70219882 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
70219807 AACAAACGAA
70219817 TATCTTCATTTAGTCCATCTTCAAACCTTTTG
1 TATCTTCATTTAGTCCATCTTCAAACCTTTTG
70219849 TATCTTCATTTAGTCCATCTTCAAACCTTTTG
1 TATCTTCATTTAGTCCATCTTCAAACCTTTTG
70219881 TA
1 TA
70219883 CATTATTGCT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.23, C:0.24, G:0.06, T:0.47
Consensus pattern (32 bp):
TATCTTCATTTAGTCCATCTTCAAACCTTTTG
Found at i:70227894 original size:29 final size:29
Alignment explanation
Indices: 70227852--70227991 Score: 201
Period size: 29 Copynumber: 4.9 Consensus size: 29
70227842 CATGACTATG
*
70227852 AATGTGATTTGGGCCTAATGGGCCACAAA
1 AATGTGATTTGGGCCTAATGGGCCACACA
*
70227881 AATGTGATTTGGGCCTAATTGGCCACACA
1 AATGTGATTTGGGCCTAATGGGCCACACA
*
70227910 AATGTGATTTGGGCCTAATTGGCCACACA
1 AATGTGATTTGGGCCTAATGGGCCACACA
* **
70227939 AATGTGATTTGGGCCTAATGGGCCATATG
1 AATGTGATTTGGGCCTAATGGGCCACACA
* *
70227968 AATGAGA-TTGGGCCTAGTGGGCCA
1 AATGTGATTTGGGCCTAATGGGCCA
70227992 TATGCATGTA
Statistics
Matches: 103, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
28 16 0.16
29 87 0.84
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (29 bp):
AATGTGATTTGGGCCTAATGGGCCACACA
Found at i:70237439 original size:22 final size:22
Alignment explanation
Indices: 70237411--70237454 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
70237401 GTTCGGTTGG
70237411 AGAAAAAGTAGGAATCGATTGA
1 AGAAAAAGTAGGAATCGATTGA
70237433 AGAAAAAGTAGGAATCGATTGA
1 AGAAAAAGTAGGAATCGATTGA
70237455 GGGAGAGAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.50, C:0.05, G:0.27, T:0.18
Consensus pattern (22 bp):
AGAAAAAGTAGGAATCGATTGA
Found at i:70239178 original size:34 final size:34
Alignment explanation
Indices: 70239126--70239216 Score: 101
Period size: 34 Copynumber: 2.6 Consensus size: 34
70239116 TTGCATATTG
* * *
70239126 TACTAAAAAGGGCTCAGGCCCAGACTGTCACTCT
1 TACTGAAAAGGGCTCAGGCCCAAACTGTCACTAT
* *
70239160 TACTGAAATGGGCTCAGGCCCAAACTGTGACTAT
1 TACTGAAAAGGGCTCAGGCCCAAACTGTCACTAT
* *
70239194 TATTGAAAAAGTGGCTAAGGCCC
1 TACTG-AAAAG-GGCTCAGGCCC
70239217 CTAACTGAAA
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
34 33 0.70
35 4 0.09
36 10 0.21
ACGTcount: A:0.31, C:0.24, G:0.23, T:0.22
Consensus pattern (34 bp):
TACTGAAAAGGGCTCAGGCCCAAACTGTCACTAT
Found at i:70241997 original size:39 final size:40
Alignment explanation
Indices: 70241880--70242064 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
70241870 GCTACTCGTT
*
70241880 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* * *
70241920 CAATTGCCTACGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
70241960 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
70241999 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
*
70242040 CAAA-GCCTTAGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
70242065 CATCAATCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
38 2 0.02
39 33 0.27
40 74 0.61
41 13 0.11
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:70241998 original size:79 final size:82
Alignment explanation
Indices: 70241880--70242064 Score: 211
Period size: 79 Copynumber: 2.3 Consensus size: 82
70241870 GCTACTCGTT
* * *
70241880 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTACGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTAC-GGATCTTAACCC
* *
70241943 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* * **
70241960 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTACGGATCTTAACCCG
* *
70242023 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
*
70242040 CAAA-GCCTTAGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
70242065 CATCAATCAA
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
78 3 0.03
79 52 0.58
80 34 0.38
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTACGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:70250043 original size:79 final size:81
Alignment explanation
Indices: 70249940--70250124 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
70249930 GCTACTAGTT
* * *
70249940 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCACACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCACACAAATGCCTTC-GGATCTTAACCC
* *
70250003 GGATTTAGTAAC-TCGCA
64 GGATATAGTAACTTAGCA
* * **
70250020 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCACACAAATGCCTTCGGATCTTAACCCGG
* *
70250084 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
70250100 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
70250125 CATCATTCAA
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 53 0.59
80 34 0.38
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCACACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:70250124 original size:40 final size:41
Alignment explanation
Indices: 70249940--70250124 Score: 195
Period size: 40 Copynumber: 4.6 Consensus size: 41
70249930 GCTACTAGTT
* * *
70249940 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCA-CA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTTAGCA
* * * *
70249980 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAAC-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTTAGCA
* *
70250020 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATC-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTTAGCA
* * *
70250059 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAACTTAGCA
70250100 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
70250125 CATCATTCAA
Statistics
Matches: 121, Mismatches: 17, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 75 0.62
41 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTTAGCA
Found at i:70257769 original size:47 final size:48
Alignment explanation
Indices: 70257715--70257843 Score: 152
Period size: 48 Copynumber: 2.7 Consensus size: 48
70257705 GTTACATGTT
** * *
70257715 TAACCGTGGTATATCCTTTTAGTACCATGTTA-ATGAATCAATATATG
1 TAACCGTGGTATATCCACTTAGCACCACGTTACATGAATCAATATATG
* * * *
70257762 TAACCGTGGCATAACCACTTAGCACCACGTTACATGTATCAATATGTG
1 TAACCGTGGTATATCCACTTAGCACCACGTTACATGAATCAATATATG
* * *
70257810 TAATCGTGCTATATCCACTTAGCACCACATTACA
1 TAACCGTGGTATATCCACTTAGCACCACGTTACA
70257844 CGTATAACCG
Statistics
Matches: 68, Mismatches: 13, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
47 26 0.38
48 42 0.62
ACGTcount: A:0.32, C:0.22, G:0.14, T:0.32
Consensus pattern (48 bp):
TAACCGTGGTATATCCACTTAGCACCACGTTACATGAATCAATATATG
Found at i:70264826 original size:38 final size:37
Alignment explanation
Indices: 70264783--70264858 Score: 98
Period size: 38 Copynumber: 2.0 Consensus size: 37
70264773 TTTCAAATTA
* * *
70264783 ACATGTATAACTGTGGCATATCCACTTAGCACTACGTT
1 ACATGTATAACCGTGGCATATCCACATAG-ACCACGTT
* *
70264821 ACATGTTTAACCGTGGTATATCCACATAGACCACGTT
1 ACATGTATAACCGTGGCATATCCACATAGACCACGTT
70264858 A
1 A
70264859 ATGAATCAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
37 8 0.24
38 25 0.76
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (37 bp):
ACATGTATAACCGTGGCATATCCACATAGACCACGTT
Done.