Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 205 of 295
Found at i:70264888 original size:46 final size:48
Alignment explanation
Indices: 70264828--70264955 Score: 179
Period size: 48 Copynumber: 2.7 Consensus size: 48
70264818 GTTACATGTT
*
70264828 TAACCGTGGTATATCCACATAG-ACCACGTTA-ATGAATCAATATATG
1 TAACCGTGGTATATCCACTTAGCACCACGTTACATGAATCAATATATG
* * * *
70264874 TAACCGTTGCATATCCACTTAGCACCACGTTACATGTATCAATATGTG
1 TAACCGTGGTATATCCACTTAGCACCACGTTACATGAATCAATATATG
* *
70264922 TAATCATGGTATATCCACTTAGCACCACGTTACA
1 TAACCGTGGTATATCCACTTAGCACCACGTTACA
70264956 CGTATAACGG
Statistics
Matches: 71, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
46 19 0.27
47 9 0.13
48 43 0.61
ACGTcount: A:0.33, C:0.23, G:0.14, T:0.30
Consensus pattern (48 bp):
TAACCGTGGTATATCCACTTAGCACCACGTTACATGAATCAATATATG
Found at i:70275458 original size:68 final size:66
Alignment explanation
Indices: 70275386--70275557 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
70275376 CATCATGTGT
* * * *
70275386 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
70275449 TGTAG
62 TGTAG
** * *
70275454 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
70275519 AG
65 AG
* * * *
70275521 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
70275558 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:70275491 original size:64 final size:64
Alignment explanation
Indices: 70275410--70275593 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
70275400 AGACATTATG
* * *
70275410 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
70275474 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
70275539 AA
63 AA
* * *
70275541 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
70275594 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:70277051 original size:653 final size:644
Alignment explanation
Indices: 70275809--70277108 Score: 2118
Period size: 653 Copynumber: 2.0 Consensus size: 644
70275799 TGGTGACCTT
* *
70275809 GTGATCATGGGCCTATACTTGTGATGTATGAAATGTGGTGAAAATGATTTGTGATATGTATGTTA
1 GTGATAATGGGCCTATACTTGTGATGTATGAAATGTGATGAAAATGATTTGTGATATGTATGTTA
70275874 AAATGAGGTTAATACAAAGAAAGTGTGAAAAGTGAATTAGCAATAAAACTGTTTTGGACAGTAGC
66 AAATGAGGTTAATACAAAGAAAGTGTGAAAAGTGAATTAGCAATAAAACTGTTTTGGACAGTAGC
* * *
70275939 AGTGACGTGATTTTGAAAAATCACCAAAAATAGTAGAAATTGACTCAATGAGATATCAAATTAAA
131 AGTAACGTGACTTTGAAAAATCACCAAAAATAGTAAAAATTGACTCAATGAGATATCAAATTAAA
* *
70276004 TATTAATGCGTCTATTTTCATATAAAAGAAACAGAGCAATAAAAGGAGTTCTATATTTTGAGATA
196 TATTAATGAGTCTATTTTCATATAAAAGAAACAGAGCAAGAAAAGGAGTTCTATATTTTGAGATA
70276069 TTTATGTTTTTGTGAGACTGGTTCAGAATGATTACGTGATCCCCTGTTCTGACTTTGGAAAATCA
261 TTTATGTTTTTGTGAGACTGGTTCAGAATGATTACGTGATCCCCTGTTCTGACTTTGGAAAATCA
* * * * * *
70276134 AAACAGTTTGGATAAAAATAATTTGAGGATTAAACTTATATTTTTGAAATACCTAATGAGTCTAT
326 AAACAATTTGGAGAAAAATAATTAGAGGATCAAACTTATATTTTTAAAATACCTAATGAGTATAT
* *
70276199 TTTTAAGATAAATCAACAAGAACATTATCCGAGTTCTGTACTGTGAGATAATTAATTTTTAGTAA
391 TTTCAAGATAAATCAACAAGAACATTATCCGAGTTATGTACTGTGAGATAATTAATTTTTAGTAA
* *
70276264 AGAGAGGTCAGAACTGTCAGAAAGTGAAACAGGGGAAATTTTAATGAATAAACTATACTAATTGG
456 AGAGAGGTCAGAACTGTCAGAAAGTGAAACAGGGGAAAATTTAATGAAAAAACTATACTAATTGG
* * * * *
70276329 ATGAACCAAAAATTATGAAAATTTTATGGTGTAAAGATATGTGAGTCTAGTTTTAGCGAAAATTT
521 ATAAACCAAAAATTATGAAAATTTTATGATGGAAAGATATATGAGTCTAGTTTCAGCGAAAATTT
70276394 ACGGATCTTAATTTGGAGCTTTGTAGCTCGAATCATAAATAAGTAAGTGACTATGACTC
586 ACGGATCTTAATTTGGAGCTTTGTAGCTCGAATCATAAATAAGTAAGTGACTATGACTC
70276453 GTGATAATGGGCCTATACTTGTGATGTATGAAATGTGATGAAAATGATTTGTGATATGTATGTTA
1 GTGATAATGGGCCTATACTTGTGATGTATGAAATGTGATGAAAATGATTTGTGATATGTATGTTA
70276518 AAATGAGGTTAATACAAAGAAAGTGTGAAAGAGTGAATTAGCAATAAAACTGTTTTGGACAGTAG
66 AAATGAGGTTAATACAAAGAAAGTGTGAAA-AGTGAATTAGCAATAAAACTGTTTTGGACAGTAG
*
70276583 CAGTAACGTGACTTTGAAAAATCACCAAAAATAGTATAAAATGAATCAGAGACTGAATGAGATAT
130 CAGTAACGTGACTTTGAAAAATCACCAAAAATAGTA-AAAAT---T----GACTCAATGAGATAT
* * * *
70276648 CAATTTAAATCTTAATGAGTCTATTTTCATATAAAATAAACATAGCAAGAAAAGGAGTTCTATAT
187 CAAATTAAATATTAATGAGTCTATTTTCATATAAAAGAAACAGAGCAAGAAAAGGAGTTCTATAT
* *
70276713 TTTGAGATATTTATGTTTTTGTGATACTGGTTCAGAATGATTATGTGATCCCCTGTTCTGACTTT
252 TTTGAGATATTTATGTTTTTGTGAGACTGGTTCAGAATGATTACGTGATCCCCTGTTCTGACTTT
* *
70276778 GGAAAATCACAAA-AATTTGGAGAAATATAATTAGAGGCTCAAACTTATATTTTTAAAAT-CCTT
317 GGAAAATCA-AAACAATTTGGAGAAAAATAATTAGAGGATCAAACTTATATTTTTAAAATACC-T
* *
70276841 AATGAGTATATTTTCAATATAAATCAACAATAACATTATCCGAGTTATGTACTGTGAGATAATTA
380 AATGAGTATATTTTCAAGATAAATCAACAAGAACATTATCCGAGTTATGTACTGTGAGATAATTA
* *
70276906 ATTTTTAGTGAAGAGAGGTCATAACTGTCAGAAAGTGAAACAGGGGAAAATTTAATGAAAAAACT
445 ATTTTTAGTAAAGAGAGGTCAGAACTGTCAGAAAGTGAAACAGGGGAAAATTTAATGAAAAAACT
* * *
70276971 GTACTAATTGGCTAAACCAAAAATTATGGAAATTTTATGATGGAAAGATATATGAGTCTAGTTTC
510 ATACTAATTGGATAAACCAAAAATTATGAAAATTTTATGATGGAAAGATATATGAGTCTAGTTTC
* * *
70277036 AGGGGAAATTTACGGATCTTAATTTGGAGCTTTGTAGCTCGAATTATAAATAAGTAAGTGACTAT
575 AGCGAAAATTTACGGATCTTAATTTGGAGCTTTGTAGCTCGAATCATAAATAAGTAAGTGACTAT
70277101 GACTC
640 GACTC
70277106 GTG
1 GTG
70277109 TGGACAGTTT
Statistics
Matches: 604, Mismatches: 41, Indels: 13
0.92 0.06 0.02
Matches are distributed among these distances:
644 93 0.15
645 68 0.11
646 4 0.01
649 1 0.00
652 2 0.00
653 433 0.72
654 3 0.00
ACGTcount: A:0.38, C:0.10, G:0.19, T:0.33
Consensus pattern (644 bp):
GTGATAATGGGCCTATACTTGTGATGTATGAAATGTGATGAAAATGATTTGTGATATGTATGTTA
AAATGAGGTTAATACAAAGAAAGTGTGAAAAGTGAATTAGCAATAAAACTGTTTTGGACAGTAGC
AGTAACGTGACTTTGAAAAATCACCAAAAATAGTAAAAATTGACTCAATGAGATATCAAATTAAA
TATTAATGAGTCTATTTTCATATAAAAGAAACAGAGCAAGAAAAGGAGTTCTATATTTTGAGATA
TTTATGTTTTTGTGAGACTGGTTCAGAATGATTACGTGATCCCCTGTTCTGACTTTGGAAAATCA
AAACAATTTGGAGAAAAATAATTAGAGGATCAAACTTATATTTTTAAAATACCTAATGAGTATAT
TTTCAAGATAAATCAACAAGAACATTATCCGAGTTATGTACTGTGAGATAATTAATTTTTAGTAA
AGAGAGGTCAGAACTGTCAGAAAGTGAAACAGGGGAAAATTTAATGAAAAAACTATACTAATTGG
ATAAACCAAAAATTATGAAAATTTTATGATGGAAAGATATATGAGTCTAGTTTCAGCGAAAATTT
ACGGATCTTAATTTGGAGCTTTGTAGCTCGAATCATAAATAAGTAAGTGACTATGACTC
Found at i:70292731 original size:33 final size:35
Alignment explanation
Indices: 70292693--70292773 Score: 96
Period size: 33 Copynumber: 2.4 Consensus size: 35
70292683 GCTTAAGCCC
*
70292693 ATTCAGATAACAGTGATACTGGGCCAGAG-CCCTT
1 ATTCAGATAACAGTGAAACTGGGCCAGAGCCCCTT
* * **
70292727 -TTCAGATTACA-TTAAACTGGGCCTTAGCCCCTT
1 ATTCAGATAACAGTGAAACTGGGCCAGAGCCCCTT
70292760 ATTCAGATAACAGT
1 ATTCAGATAACAGT
70292774 ATGGCCCATA
Statistics
Matches: 38, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
32 12 0.32
33 15 0.39
34 10 0.26
35 1 0.03
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (35 bp):
ATTCAGATAACAGTGAAACTGGGCCAGAGCCCCTT
Found at i:70294424 original size:24 final size:24
Alignment explanation
Indices: 70294385--70294490 Score: 149
Period size: 24 Copynumber: 4.4 Consensus size: 24
70294375 GCCGGCCAAC
* *
70294385 TCCTGCTCCTTGATCAACTCCTAAA
1 TCCT-CTCCTTTATCAGCTCCTAAA
*
70294410 TCTTCTCCTTTATCAGCTCCTAAA
1 TCCTCTCCTTTATCAGCTCCTAAA
*
70294434 TCCTCTCCCTTATCAGCTCCTAAA
1 TCCTCTCCTTTATCAGCTCCTAAA
*
70294458 TCCTCTCCCTTATCAGCTCCTAAA
1 TCCTCTCCTTTATCAGCTCCTAAA
*
70294482 TCTTCTCCT
1 TCCTCTCCT
70294491 GACAGCCTTT
Statistics
Matches: 74, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
24 71 0.96
25 3 0.04
ACGTcount: A:0.20, C:0.39, G:0.05, T:0.37
Consensus pattern (24 bp):
TCCTCTCCTTTATCAGCTCCTAAA
Found at i:70295199 original size:40 final size:40
Alignment explanation
Indices: 70295146--70295240 Score: 122
Period size: 40 Copynumber: 2.4 Consensus size: 40
70295136 ATCTCGGTAT
*
70295146 CGCACACTTAGTGCC-TCATATAGCCGAAGCTA-TTCCAAC
1 CGCACACTTAGTGCCAT-ATATAGCAGAAGCTATTTCCAAC
* * *
70295185 ACGCACACTTAGTGCCATTTATAGCAGGAGCTATTTCGAAC
1 -CGCACACTTAGTGCCATATATAGCAGAAGCTATTTCCAAC
70295226 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
70295241 GAGCATAGTC
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
40 42 0.86
41 7 0.14
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.24
Consensus pattern (40 bp):
CGCACACTTAGTGCCATATATAGCAGAAGCTATTTCCAAC
Found at i:70311897 original size:55 final size:53
Alignment explanation
Indices: 70311771--70312269 Score: 363
Period size: 55 Copynumber: 9.5 Consensus size: 53
70311761 AACTTACCAT
* ** * * *
70311771 TGCCATGTCTTGACATGGTCTTATGTGGTATCCTTGCCTTAT-GAACTTACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTA-CCTTTCCTTATAGAACTCATCAA
* *
70311824 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTTCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTACC-TTTCCTTATAG-AACTCATCAA
* * * *
70311879 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-GAGCTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTA-CCTTTCCTTATAGAACTCATCAA
* * *
70311932 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAATAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTACCTTT-CCTTAT-AGAACTCATCAA
* * * * * * *
70311987 TGCCATGTCTTGACATGGTCTTCCATGATTTCCTTGCCTTATAAAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATG-GTACCTTTCCTTATAGAACTCATCAA
* * ***
70312041 TGCCATGCCTTGGCATGGTCTTACAT-G-A--TATCCTTATCTTAC-CA--AA
1 TGCCATGCCTTGACATGGTCTTACATGGTACCTTTCCTTATAGAACTCATCAA
** * *
70312087 TGCCATGTTCC-AAACATGGTCTTACATGGTATCATTGT-CTTATAGAACTTATCAA
1 TGCCATG--CCTTGACATGGTCTTACATGGTA-CCTT-TCCTTATAGAACTCATCAA
* * ***
70312142 TGCCATGCCTTGGCATGGTCTTACAT-G-A--TATCCTTATCTTAC-CA--AA
1 TGCCATGCCTTGACATGGTCTTACATGGTACCTTTCCTTATAGAACTCATCAA
** *
70312188 TGCCATGTTCC-AAACATGGTCTTACATGGTATCCTTGT-CTTATAGAACTTATCAA
1 TGCCATG--CCTTGACATGGTCTTACATGGTA-CCTT-TCCTTATAGAACTCATCAA
*
70312243 TGCCATGCCTTGGCATGGTCTTACATG
1 TGCCATGCCTTGACATGGTCTTACATG
70312270 ATATCCTTAT
Statistics
Matches: 345, Mismatches: 68, Indels: 65
0.72 0.14 0.14
Matches are distributed among these distances:
46 18 0.05
47 26 0.08
48 9 0.03
49 19 0.06
52 23 0.07
53 83 0.24
54 62 0.18
55 99 0.29
56 6 0.02
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.35
Consensus pattern (53 bp):
TGCCATGCCTTGACATGGTCTTACATGGTACCTTTCCTTATAGAACTCATCAA
Found at i:70312109 original size:47 final size:47
Alignment explanation
Indices: 70312054--70312330 Score: 222
Period size: 47 Copynumber: 5.6 Consensus size: 47
70312044 CATGCCTTGG
70312054 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
* * ***
70312101 CATGGTCTTACATGGTATCATTGTCTTATAGAACTTATC-AATGCCATG--CCTTGG
1 CATGGTCTTACAT-G-AT-A-T-CCTTAT----CTTACCAAATGCCATGTTCC-AAA
70312155 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
* * * ***
70312202 CATGGTCTTACATGGTATCCTTGTCTTATAGAACTTATCAATGCCATG--CCTTGG
1 CATGGTCTTACATGATATCCTTATC-T-T---AC-CA--AATGCCATGTTCC-AAA
*
70312256 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATATTCCAAA
1 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
* *
70312303 CATGGTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGATATCCTTATCTTA
70312331 GTGCCAATGC
Statistics
Matches: 181, Mismatches: 25, Indels: 48
0.71 0.10 0.19
Matches are distributed among these distances:
45 5 0.03
46 17 0.09
47 62 0.34
48 7 0.04
49 10 0.06
50 2 0.01
51 2 0.01
52 10 0.06
53 7 0.04
54 36 0.20
55 18 0.10
56 5 0.03
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.36
Consensus pattern (47 bp):
CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
Found at i:70312129 original size:101 final size:101
Alignment explanation
Indices: 70311783--70312330 Score: 663
Period size: 101 Copynumber: 5.3 Consensus size: 101
70311773 CCATGTCTTG
** *
70311783 ACATGGTCTTATGTGGTATCCTTGCCTTAT-GAACTTACCAATGCCATGCCTTGGCATGGTCTTA
1 ACATGGTCTTACATGGTATCCTTGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
* * * ***
70311847 CATGGGACCTTTTCCTTATAGTAACTCATCAATGCCATG-TCTTG
66 CAT--GA---TATCCTTAT-CTTAC-CA--AATGCCATGTTCCAA
* * *
70311891 ACATGGTCTTACATGGTATCCTTGCCTTAT-GAGCTCACCAATGCCATGCCTTGGCATGGTCTTA
1 ACATGGTCTTACATGGTATCCTTGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
* * * ***
70311955 CATGGGACCTTTGCCTTATAATAACTCATCAATGCCATG-TCTTG
66 CAT--GA--TAT-CCTTAT-CTTAC-CA--AATGCCATGTTCCAA
* * * *
70311999 ACATGGTCTTCCATGATTTCCTTGCCTTATAAAACTTATCAATGCCATGCCTTGGCATGGTCTTA
1 ACATGGTCTTACATGGTATCCTTGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
70312064 CATGATATCCTTATCTTACCAAATGCCATGTTCCAA
66 CATGATATCCTTATCTTACCAAATGCCATGTTCCAA
* *
70312100 ACATGGTCTTACATGGTATCATTGTCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
1 ACATGGTCTTACATGGTATCCTTGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
70312165 CATGATATCCTTATCTTACCAAATGCCATGTTCCAA
66 CATGATATCCTTATCTTACCAAATGCCATGTTCCAA
*
70312201 ACATGGTCTTACATGGTATCCTTGTCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
1 ACATGGTCTTACATGGTATCCTTGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
*
70312266 CATGATATCCTTATCTTACCAAATGCCATATTCCAA
66 CATGATATCCTTATCTTACCAAATGCCATGTTCCAA
*
70312302 ACATGGTCTTACATGGTATCCTTGTCTTA
1 ACATGGTCTTACATGGTATCCTTGCCTTA
70312331 GTGCCAATGC
Statistics
Matches: 410, Mismatches: 27, Indels: 13
0.91 0.06 0.03
Matches are distributed among these distances:
100 9 0.02
101 225 0.55
102 2 0.00
103 3 0.01
104 6 0.01
105 2 0.00
107 6 0.01
108 124 0.30
109 33 0.08
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.36
Consensus pattern (101 bp):
ACATGGTCTTACATGGTATCCTTGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
CATGATATCCTTATCTTACCAAATGCCATGTTCCAA
Found at i:70313124 original size:31 final size:30
Alignment explanation
Indices: 70313089--70313150 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
70313079 TCCCTAACTC
* *
70313089 AAAACTTTGGCAAAATTAAAATTTTTCCCCT
1 AAAACTTT-ACAAAATTAAAATTTTACCCCT
* *
70313120 AAAACTTTACGAAATTACAATTTTACCCCT
1 AAAACTTTACAAAATTAAAATTTTACCCCT
70313150 A
1 A
70313151 GGCTCAGAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
30 19 0.70
31 8 0.30
ACGTcount: A:0.40, C:0.21, G:0.05, T:0.34
Consensus pattern (30 bp):
AAAACTTTACAAAATTAAAATTTTACCCCT
Found at i:70317357 original size:64 final size:64
Alignment explanation
Indices: 70317203--70317461 Score: 193
Period size: 68 Copynumber: 3.9 Consensus size: 64
70317193 TGGATGATAC
* ** * ** * *
70317203 AGATAGTATGTAGCTAGGTCACATGTATGGTGCTGGGTGCACATCATGT-GTACAAGAGAGCTAC
1 AGATA-TATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAGCTAC
70317267 AAG
64 --G
* * * *
70317270 ACATTATTATGTAGCTAAGTCGCATGGGTGATACTATGTGTACACCATGTAGATAAGAGAGCTAC
1 AGA-TA-TATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTAC
70317335 G
64 G
* * * * * *
70317336 GGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTA
1 AGATATATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTA
70317401 CG
63 CG
* * * *
70317403 AGATAAAT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 AGATATATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
70317462 CGAACTATAT
Statistics
Matches: 152, Mismatches: 33, Indels: 18
0.75 0.16 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.12
64 25 0.16
65 2 0.01
66 23 0.15
67 34 0.22
68 47 0.31
69 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (64 bp):
AGATATATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACG
Found at i:70318471 original size:15 final size:16
Alignment explanation
Indices: 70318451--70318480 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
70318441 CATGGAACTA
70318451 TGGTAT-ATGAAATAT
1 TGGTATAATGAAATAT
70318466 TGGTATAATGAAATA
1 TGGTATAATGAAATA
70318481 AATGATATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.43, C:0.00, G:0.20, T:0.37
Consensus pattern (16 bp):
TGGTATAATGAAATAT
Found at i:70319552 original size:20 final size:20
Alignment explanation
Indices: 70319527--70319571 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
70319517 AGGGGCTAAA
* *
70319527 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAATTATAAAATTTG
*
70319547 ATGAAAAATTATAAAATTTT
1 ATGAAAAATTATAAAATTTG
70319567 ATGAA
1 ATGAA
70319572 TACATGTGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.51, C:0.00, G:0.13, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTATAAAATTTG
Found at i:70346210 original size:27 final size:27
Alignment explanation
Indices: 70346177--70346271 Score: 111
Period size: 27 Copynumber: 3.5 Consensus size: 27
70346167 CCTTAGGGGC
*
70346177 ATTTCGGCAATTTTACAAGTCGAGGGT
1 ATTTCGGTAATTTTACAAGTCGAGGGT
* *
70346204 ATTTCGGTAATTGTACAGGTCGAGGGT
1 ATTTCGGTAATTTTACAAGTCGAGGGT
* * *
70346231 ATTTCGGTAATTTCACAAAT-TAGGGGT
1 ATTTCGGTAATTTTACAAGTCGA-GGGT
*
70346258 ATTTTGGTAATTTT
1 ATTTCGGTAATTTT
70346272 CTTTTATTAC
Statistics
Matches: 57, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
26 1 0.02
27 56 0.98
ACGTcount: A:0.25, C:0.11, G:0.25, T:0.39
Consensus pattern (27 bp):
ATTTCGGTAATTTTACAAGTCGAGGGT
Found at i:70349519 original size:21 final size:21
Alignment explanation
Indices: 70349494--70349536 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
70349484 CCATTAGTTT
70349494 ATAATTATAATTAA-TAAGTAA
1 ATAATTA-AATTAATTAAGTAA
*
70349515 ATAATTAACTTAATTAAGTAA
1 ATAATTAAATTAATTAAGTAA
70349536 A
1 A
70349537 ACATGATTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.56, C:0.02, G:0.05, T:0.37
Consensus pattern (21 bp):
ATAATTAAATTAATTAAGTAA
Found at i:70353300 original size:16 final size:16
Alignment explanation
Indices: 70353279--70353333 Score: 51
Period size: 16 Copynumber: 3.4 Consensus size: 16
70353269 TGTTTAAGTT
70353279 ATCTTGGATGTTCATG
1 ATCTTGGATGTTCATG
* *
70353295 ATCTTGG-T-CTAATG
1 ATCTTGGATGTTCATG
70353309 TTATCTTGGATGTTCATG
1 --ATCTTGGATGTTCATG
*
70353327 TTCTTGG
1 ATCTTGG
70353334 TCTAATGATG
Statistics
Matches: 30, Mismatches: 5, Indels: 8
0.70 0.12 0.19
Matches are distributed among these distances:
14 4 0.13
15 1 0.03
16 20 0.67
17 1 0.03
18 4 0.13
ACGTcount: A:0.16, C:0.13, G:0.24, T:0.47
Consensus pattern (16 bp):
ATCTTGGATGTTCATG
Found at i:70353317 original size:32 final size:32
Alignment explanation
Indices: 70353276--70353340 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
70353266 TTGTGTTTAA
70353276 GTTATCTTGGATGTTCATGATCTTGGTCTAAT
1 GTTATCTTGGATGTTCATGATCTTGGTCTAAT
*
70353308 GTTATCTTGGATGTTCATGTTCTTGGTCTAAT
1 GTTATCTTGGATGTTCATGATCTTGGTCTAAT
70353340 G
1 G
70353341 ATGTTGATGA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.17, C:0.12, G:0.23, T:0.48
Consensus pattern (32 bp):
GTTATCTTGGATGTTCATGATCTTGGTCTAAT
Found at i:70353353 original size:32 final size:31
Alignment explanation
Indices: 70353278--70353366 Score: 110
Period size: 32 Copynumber: 2.8 Consensus size: 31
70353268 GTGTTTAAGT
70353278 TATCTTGGATGTTCATGATCTTGGTCTAATG
1 TATCTTGGATGTTCATGATCTTGGTCTAATG
*
70353309 TTATCTTGGATGTTCATGTTCTTGGTCTAATG
1 -TATCTTGGATGTTCATGATCTTGGTCTAATG
*
70353341 -ATGTTGATGATGTTCGATGAT-TTGGT
1 TATCTTG--GATGTTC-ATGATCTTGGT
70353367 ATTATTAAGA
Statistics
Matches: 51, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
30 5 0.10
32 42 0.82
33 4 0.08
ACGTcount: A:0.18, C:0.10, G:0.25, T:0.47
Consensus pattern (31 bp):
TATCTTGGATGTTCATGATCTTGGTCTAATG
Found at i:70354157 original size:33 final size:34
Alignment explanation
Indices: 70354113--70354181 Score: 113
Period size: 34 Copynumber: 2.1 Consensus size: 34
70354103 AGTAACAGTC
*
70354113 CAGTATTAGTGTGGG-CTTAGCCCATTACAATAA
1 CAGTATCAGTGTGGGCCTTAGCCCATTACAATAA
*
70354146 CAGTATCAGTGTGGGCCTTAGCCCATTACAGTAA
1 CAGTATCAGTGTGGGCCTTAGCCCATTACAATAA
70354180 CA
1 CA
70354182 ATAACAGAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
33 14 0.42
34 19 0.58
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.28
Consensus pattern (34 bp):
CAGTATCAGTGTGGGCCTTAGCCCATTACAATAA
Found at i:70360559 original size:56 final size:56
Alignment explanation
Indices: 70360473--70360587 Score: 203
Period size: 56 Copynumber: 2.1 Consensus size: 56
70360463 TCTTAGTAGG
*
70360473 GAAGTATGATATATGTGAGCCCTTGTGGCTAATTCTGTCAAATGCGCCTTTGTGGT
1 GAAGTATGATATATGTGAGCCCTTGTGGCTAATTCTGTCAAATGCACCTTTGTGGT
* *
70360529 GAAGTATGTTATATGTGAGCCCTTGTGGCTAATTCTGTTAAATGCACCTTTGTGGT
1 GAAGTATGATATATGTGAGCCCTTGTGGCTAATTCTGTCAAATGCACCTTTGTGGT
70360585 GAA
1 GAA
70360588 ATCTGTCATG
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.23, C:0.15, G:0.26, T:0.37
Consensus pattern (56 bp):
GAAGTATGATATATGTGAGCCCTTGTGGCTAATTCTGTCAAATGCACCTTTGTGGT
Found at i:70360567 original size:29 final size:29
Alignment explanation
Indices: 70360482--70360568 Score: 90
Period size: 29 Copynumber: 3.1 Consensus size: 29
70360472 GGAAGTATGA
70360482 TATATGTGAGCCCTTGTGGCTAATTCTGT
1 TATATGTGAGCCCTTGTGGCTAATTCTGT
* * * * * *
70360511 CA-A-ATGCGCCTTTGTGG-TGAAGTATGT
1 TATATGTGAGCCCTTGTGGCT-AATTCTGT
70360538 TATATGTGAGCCCTTGTGGCTAATTCTGT
1 TATATGTGAGCCCTTGTGGCTAATTCTGT
70360567 TA
1 TA
70360569 AATGCACCTT
Statistics
Matches: 42, Mismatches: 12, Indels: 8
0.68 0.19 0.13
Matches are distributed among these distances:
26 1 0.02
27 18 0.43
28 2 0.05
29 20 0.48
30 1 0.02
ACGTcount: A:0.20, C:0.16, G:0.25, T:0.39
Consensus pattern (29 bp):
TATATGTGAGCCCTTGTGGCTAATTCTGT
Found at i:70360592 original size:27 final size:27
Alignment explanation
Indices: 70360506--70360593 Score: 70
Period size: 27 Copynumber: 3.2 Consensus size: 27
70360496 TGTGGCTAAT
* * *
70360506 TCTGTCAAATGCGCCTTTGTGGTGAAG
1 TCTGTTAAATGCACCTTTGTGGTGAAA
* * * * *
70360533 TATGTTATATGTGAGCCCTTGTGGCT-AAT
1 TCTGTTAAATG-CA-CCTTTGTGG-TGAAA
70360562 TCTGTTAAATGCACCTTTGTGGTGAAA
1 TCTGTTAAATGCACCTTTGTGGTGAAA
70360589 TCTGT
1 TCTGT
70360594 CATGTGGATG
Statistics
Matches: 45, Mismatches: 12, Indels: 8
0.69 0.18 0.12
Matches are distributed among these distances:
26 1 0.02
27 23 0.51
28 1 0.02
29 19 0.42
30 1 0.02
ACGTcount: A:0.20, C:0.16, G:0.25, T:0.39
Consensus pattern (27 bp):
TCTGTTAAATGCACCTTTGTGGTGAAA
Found at i:70360614 original size:56 final size:56
Alignment explanation
Indices: 70360483--70360615 Score: 169
Period size: 56 Copynumber: 2.4 Consensus size: 56
70360473 GAAGTATGAT
* * * *
70360483 ATATGTGAGCCCTTGTGGCTAATTCTGTCAAATGCGCCTTTGTGGTGAAGTATGTT
1 ATATGTGAGCCCTTATGGCTAATTCTGTCAAATGCACCTTTGTGGTGAAATATGTC
* * *
70360539 ATATGTGAGCCCTTGTGGCTAATTCTGTTAAATGCACCTTTGTGGTGAAATCTGTC
1 ATATGTGAGCCCTTATGGCTAATTCTGTCAAATGCACCTTTGTGGTGAAATATGTC
* *
70360595 ATGTG-GATGCCTTTATGGCTA
1 ATATGTGA-GCCCTTATGGCTA
70360616 TCTATCTGTA
Statistics
Matches: 68, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
55 2 0.03
56 66 0.97
ACGTcount: A:0.20, C:0.17, G:0.26, T:0.38
Consensus pattern (56 bp):
ATATGTGAGCCCTTATGGCTAATTCTGTCAAATGCACCTTTGTGGTGAAATATGTC
Found at i:70377868 original size:30 final size:30
Alignment explanation
Indices: 70377811--70377868 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
70377801 TTTTCGAGCA
**
70377811 TAGGGGCAAAATGGTCATTTTGTCAAAGTC
1 TAGGGGCAAAATGGTCATTTTACCAAAGTC
*
70377841 TAGGGGCAAAATGGTTATTTTACCAAAG
1 TAGGGGCAAAATGGTCATTTTACCAAAG
70377869 ATGTGAATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.29
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCATTTTACCAAAGTC
Found at i:70378261 original size:46 final size:47
Alignment explanation
Indices: 70378208--70378375 Score: 184
Period size: 47 Copynumber: 3.6 Consensus size: 47
70378198 TGATTTGTGC
70378208 GCTAGTGTAAGA-CATGTCTGGGACATGCTTCGGCCACATTATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGCTTCGGCCACATTATGAGA
* * * *
70378254 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CATC-TAGACGAGG
1 GCTAGTGTAAGACCATGTCTGGGACAT-GCTTCGGCCA-CAT-TATGAGA
* * * *
70378302 GCTAGTGTAAGA-CATGTCTGGGACATGCATT-AGCCATACTATGATA
1 GCTAGTGTAAGACCATGTCTGGGACATGC-TTCGGCCACATTATGAGA
*
70378348 GCCAGTGTAAGACCATGTCTGGGACATG
1 GCTAGTGTAAGACCATGTCTGGGACATG
70378376 GCATCGGCAC
Statistics
Matches: 101, Mismatches: 13, Indels: 15
0.78 0.10 0.12
Matches are distributed among these distances:
46 29 0.29
47 49 0.49
48 23 0.23
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (47 bp):
GCTAGTGTAAGACCATGTCTGGGACATGCTTCGGCCACATTATGAGA
Found at i:70378369 original size:94 final size:94
Alignment explanation
Indices: 70378208--70378384 Score: 293
Period size: 94 Copynumber: 1.9 Consensus size: 94
70378198 TGATTTGTGC
* * *
70378208 GCTAGTGTAAGACATGTCTGGGACATGCTTCGGCCACATTATGAGAGCTAGTGTAAGACCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCTTCAGCCACACTATGAGAGCCAGTGTAAGACCATGTC
70378273 TGGGACATGGCATCGGCATCTAGACGAGG
66 TGGGACATGGCATCGGCATCTAGACGAGG
* *
70378302 GCTAGTGTAAGACATGTCTGGGACATGCATT-AGCCATACTATGATAGCCAGTGTAAGACCATGT
1 GCTAGTGTAAGACATGTCTGGGACATGC-TTCAGCCACACTATGAGAGCCAGTGTAAGACCATGT
70378366 CTGGGACATGGCATCGGCA
65 CTGGGACATGGCATCGGCA
70378385 CAGAGATGAG
Statistics
Matches: 77, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
94 75 0.97
95 2 0.03
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTGGGACATGCTTCAGCCACACTATGAGAGCCAGTGTAAGACCATGTC
TGGGACATGGCATCGGCATCTAGACGAGG
Found at i:70378603 original size:3 final size:3
Alignment explanation
Indices: 70378595--70378623 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
70378585 TATTCCAATT
70378595 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
70378624 TCTTTTCTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:70379442 original size:6 final size:6
Alignment explanation
Indices: 70379431--70379461 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
70379421 AAAAATCCGA
*
70379431 AACAGT AACAGT AACAGT AACGGT AACAGT A
1 AACAGT AACAGT AACAGT AACAGT AACAGT A
70379462 TTCGACACAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.48, C:0.16, G:0.19, T:0.16
Consensus pattern (6 bp):
AACAGT
Found at i:70380596 original size:5 final size:5
Alignment explanation
Indices: 70380586--70380615 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
70380576 TTTCTTTTAT
70380586 ATATA ATATA ATATA ATATA ATATA ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA
70380616 CTTAATTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATATA
Found at i:70386802 original size:12 final size:12
Alignment explanation
Indices: 70386785--70386809 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
70386775 AGTGTCGAAT
70386785 CGGTAACAGTAA
1 CGGTAACAGTAA
70386797 CGGTAACAGTAA
1 CGGTAACAGTAA
70386809 C
1 C
70386810 AGTAGTCGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.20, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTAACAGTAA
Found at i:70387898 original size:5 final size:5
Alignment explanation
Indices: 70387888--70387927 Score: 80
Period size: 5 Copynumber: 8.0 Consensus size: 5
70387878 TTTCTTTTAT
70387888 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
70387928 CTTAATTATT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 35 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATATA
Found at i:70391051 original size:2 final size:2
Alignment explanation
Indices: 70391038--70391077 Score: 62
Period size: 2 Copynumber: 20.0 Consensus size: 2
70391028 TGTATGGTGG
* *
70391038 GT GT GT GG GT GT GT GA GT GT GT GT GT GT GT GT GT GT GT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
70391078 AGTTGATGTA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.03, C:0.00, G:0.53, T:0.45
Consensus pattern (2 bp):
GT
Found at i:70396319 original size:47 final size:47
Alignment explanation
Indices: 70396249--70396578 Score: 457
Period size: 47 Copynumber: 7.1 Consensus size: 47
70396239 TATGAAATGA
70396249 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
*
70396296 TGATAAGGCCTAATGG-CGAATGTGA--AA-GT----GTATATATATG
1 TGATAAGGCCTAATGGCCG-ATGTGATGAATGTGAAAGTGTATATATG
70396336 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATG
70396385 TGAT-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
70396431 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
70396478 TGATAAGGCCTAATGGCCGATGTGATGAATG-G-AAGTGTATATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATG
* * * * * * * *
70396525 TGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
70396572 TGATAAG
1 TGATAAG
70396579 TCCCGAAGGG
Statistics
Matches: 255, Mismatches: 12, Indels: 32
0.85 0.04 0.11
Matches are distributed among these distances:
40 32 0.13
41 2 0.01
42 2 0.01
43 2 0.01
44 2 0.01
45 7 0.03
46 15 0.06
47 141 0.55
48 35 0.14
49 17 0.07
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
Found at i:70396753 original size:37 final size:37
Alignment explanation
Indices: 70396697--70396775 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
70396687 CCGAGCTCTA
* * * *
70396697 AAGACCTGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
70396734 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
70396771 AAGAC
1 AAGAC
70396776 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:70418443 original size:48 final size:48
Alignment explanation
Indices: 70418372--70418594 Score: 349
Period size: 48 Copynumber: 4.6 Consensus size: 48
70418362 ATGTCATGTT
* **
70418372 CGATGCCATGTCCCAGACATGGTCTTACACTAAAGCACATATCAACGC
1 CGATGCCATGTCCCAGACTTGGTCTTACACTAGTGCACATATCAACGC
*
70418420 CGATGCCATGTCCCAGACTTGGTCTTACACTAGTGCACATATCAACAC
1 CGATGCCATGTCCCAGACTTGGTCTTACACTAGTGCACATATCAACGC
*
70418468 CGATGCCATGTCCCAGACTTGGTCTTACACTAGTGCACATTTCAACGC
1 CGATGCCATGTCCCAGACTTGGTCTTACACTAGTGCACATATCAACGC
* * *
70418516 TGATGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATCAACGC
1 CGATGCCATGTCCCAGACTTGGTCTTACACTAGTGCACATATCAACGC
*
70418564 CGATGTCATGTCCCAGACATT-GTCTTACACT
1 CGATGCCATGTCCCAGAC-TTGGTCTTACACT
70418595 GGCTCTCATG
Statistics
Matches: 161, Mismatches: 13, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
48 160 0.99
49 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.25
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACTTGGTCTTACACTAGTGCACATATCAACGC
Found at i:70418617 original size:96 final size:95
Alignment explanation
Indices: 70418372--70418655 Score: 340
Period size: 96 Copynumber: 3.0 Consensus size: 95
70418362 ATGTCATGTT
* **
70418372 CGATGCCATGTCCCAGACATGGTCTTACACTAAAGCACATATCAACGCCGATGCCATGTCCCAGA
1 CGATGCCATGTCCCAGACTTGGTCTTACACTAGTGCACATATCAACG-CGATGCCATGTCCCAGA
* *
70418437 CTTGGTCTTACACTAGTGCACATATCAACAC
65 CATGGTCTTACACTAGCGCACATATCAACAC
*
70418468 CGATGCCATGTCCCAGACTTGGTCTTACACTAGTGCACATTTCAACGCTGATGCCATGTCCCAGA
1 CGATGCCATGTCCCAGACTTGGTCTTACACTAGTGCACATATCAACGC-GATGCCATGTCCCAGA
*
70418533 CATGGTCTTACACTAGCGCACATATCAACGC
65 CATGGTCTTACACTAGCGCACATATCAACAC
* * * *** *
70418564 CGATGTCATGTCCCAGACATT-GTCTTACACTGGCT-CTCATGAT-GTGGTCGATGCCATGTTCC
1 CGATGCCATGTCCCAGAC-TTGGTCTTACACTAG-TGCACAT-ATCAACG-CGATGCCATGTCCC
* * *
70418626 AAACATGGTCTTACACTGGCACACATATCA
62 AGACATGGTCTTACACTAGCGCACATATCA
70418656 CCCAAATGTC
Statistics
Matches: 165, Mismatches: 18, Indels: 10
0.85 0.09 0.05
Matches are distributed among these distances:
95 1 0.01
96 159 0.96
97 5 0.03
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (95 bp):
CGATGCCATGTCCCAGACTTGGTCTTACACTAGTGCACATATCAACGCGATGCCATGTCCCAGAC
ATGGTCTTACACTAGCGCACATATCAACAC
Found at i:70418651 original size:144 final size:144
Alignment explanation
Indices: 70418373--70418651 Score: 366
Period size: 144 Copynumber: 1.9 Consensus size: 144
70418363 TGTCATGTTC
70418373 GATGCCATGTCCCAGACATGGTCTTACACTAAAGCACATATCAACGCCGATGCCATGTCCCAGAC
1 GATGCCATGTCCCAGACATGGTCTTACACTAAAGCACATATCAACGCCGATGCCATGTCCCAGAC
* * **
70418438 TTGGTCTTACACTAGTGCACATATCAACACCGATGCCATGTCCCAGACTTGGTCTTACACTAGTG
66 TTGGTCTTACACTAGTGCACATATCAACACCGATGCCATGTCCCAAACATGGTCTTACACTAGCA
70418503 CACATTTCAACGCT
131 CACATTTCAACGCT
** *
70418517 GATGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATCAACGCCGATGTCATGTCCCAGAC
1 GATGCCATGTCCCAGACATGGTCTTACACTAAAGCACATATCAACGCCGATGCCATGTCCCAGAC
* * ***** * *
70418582 ATT-GTCTTACACTGGCT-CTCATGAT-GTGGTCGATGCCATGTTCCAAACATGGTCTTACACTG
66 -TTGGTCTTACACTAG-TGCACAT-ATCAACACCGATGCCATGTCCCAAACATGGTCTTACACTA
70418644 GCACACAT
128 GCACACAT
70418652 ATCACCCAAA
Statistics
Matches: 116, Mismatches: 16, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
144 111 0.96
145 5 0.04
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.26
Consensus pattern (144 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAAAGCACATATCAACGCCGATGCCATGTCCCAGAC
TTGGTCTTACACTAGTGCACATATCAACACCGATGCCATGTCCCAAACATGGTCTTACACTAGCA
CACATTTCAACGCT
Found at i:70422400 original size:47 final size:47
Alignment explanation
Indices: 70422334--70422806 Score: 777
Period size: 47 Copynumber: 10.1 Consensus size: 47
70422324 GAAATGATAG
70422334 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
70422381 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
70422428 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
70422475 TAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
70422522 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
70422569 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
70422616 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
70422663 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
70422710 TAAGGCCTAATGGCCGATGTG-TGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * * *
70422756 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
70422803 TAAG
1 TAAG
70422807 TCCCGAAGGG
Statistics
Matches: 404, Mismatches: 21, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
46 40 0.10
47 364 0.90
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:70422999 original size:37 final size:37
Alignment explanation
Indices: 70422925--70423003 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
70422915 CCGAGCTCTA
* * * * *
70422925 AAGACCCGATGACTACGTGTGGGGATTTTGTCTGGGT
1 AAGACCCGATAACTACGAGTGGAGATTATGTCCGGGT
*
70422962 AAGACCCGATAACTTCGAGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGAGTGGAGATTATGTCCGGGT
70422999 AAGAC
1 AAGAC
70423004 TTCGTAATAA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGAGTGGAGATTATGTCCGGGT
Found at i:70425300 original size:13 final size:13
Alignment explanation
Indices: 70425282--70425306 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
70425272 ACCAGGGGAC
70425282 ACATGACCGTGTA
1 ACATGACCGTGTA
70425295 ACATGACCGTGT
1 ACATGACCGTGT
70425307 GTCACACACG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.24, G:0.24, T:0.24
Consensus pattern (13 bp):
ACATGACCGTGTA
Found at i:70429199 original size:19 final size:20
Alignment explanation
Indices: 70429165--70429203 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
70429155 CACTCACAAT
70429165 CATATAAACAGTAATTCATC
1 CATATAAACAGTAATTCATC
*
70429185 CATAT-AACGGTAATTCATC
1 CATATAAACAGTAATTCATC
70429204 TATGTAACAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.31
Consensus pattern (20 bp):
CATATAAACAGTAATTCATC
Found at i:70429364 original size:14 final size:14
Alignment explanation
Indices: 70429345--70429376 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
70429335 CGCTCTTTCG
70429345 AGCTATGATCAGTA
1 AGCTATGATCAGTA
70429359 AGCTATGATCAGTA
1 AGCTATGATCAGTA
70429373 AGCT
1 AGCT
70429377 CCTCCTAAGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.28
Consensus pattern (14 bp):
AGCTATGATCAGTA
Found at i:70433869 original size:47 final size:47
Alignment explanation
Indices: 70433818--70433922 Score: 183
Period size: 47 Copynumber: 2.2 Consensus size: 47
70433808 TAGTATTAAT
* *
70433818 TATGTGGTAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
70433865 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
70433912 AATGTGATAAG
1 TATGTGATAAG
70433923 TCCCGGAGGG
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 55 1.00
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.28
Consensus pattern (47 bp):
TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
Found at i:70435964 original size:41 final size:39
Alignment explanation
Indices: 70435834--70435964 Score: 127
Period size: 41 Copynumber: 3.2 Consensus size: 39
70435824 CCGAATAATC
* * *
70435834 CCCTGTTTGTATTTCTGTACCCCTAAATTGCACATACGTG
1 CCCTGTTTGTACTTCGGTACCCCT-AATTGCATATACGTG
* * * *
70435874 CCCCTATTTGTACGTCGGTACCTCTGAATTGCATATACATG
1 -CCCTGTTTGTACTTCGGTACCCCT-AATTGCATATACGTG
* *
70435915 CCACTGTTTGTACTTCGGTACCCCTAAGTAGCATATATGTG
1 CC-CTGTTTGTACTTCGGTACCCCTAA-TTGCATATACGTG
70435956 CCCTTGTTT
1 CCC-TGTTT
70435965 ACACTCTGGT
Statistics
Matches: 73, Mismatches: 14, Indels: 6
0.78 0.15 0.06
Matches are distributed among these distances:
40 5 0.07
41 68 0.93
ACGTcount: A:0.20, C:0.27, G:0.17, T:0.37
Consensus pattern (39 bp):
CCCTGTTTGTACTTCGGTACCCCTAATTGCATATACGTG
Found at i:70450797 original size:29 final size:29
Alignment explanation
Indices: 70450761--70450844 Score: 150
Period size: 29 Copynumber: 2.9 Consensus size: 29
70450751 AGACCAGATA
70450761 TGACTCAGGAAGTCAAACAGTTGAGATTT
1 TGACTCAGGAAGTCAAACAGTTGAGATTT
*
70450790 TGACTCAGAAAGTCAAACAGTTGAGATTT
1 TGACTCAGGAAGTCAAACAGTTGAGATTT
*
70450819 TGACTCAGGAAGTCAAATAGTTGAGA
1 TGACTCAGGAAGTCAAACAGTTGAGA
70450845 AACAAAAATA
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 52 1.00
ACGTcount: A:0.37, C:0.13, G:0.24, T:0.26
Consensus pattern (29 bp):
TGACTCAGGAAGTCAAACAGTTGAGATTT
Found at i:70456391 original size:49 final size:50
Alignment explanation
Indices: 70456321--70456564 Score: 222
Period size: 50 Copynumber: 4.9 Consensus size: 50
70456311 TTACCACCCT
* * *
70456321 TGTAACCCAAGCTATCTGGTACGCATAGTAGCCTGTACTTAGTACTACACA
1 TGTAACCTAA-CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
* * * * *
70456372 TGTGA-CTAACAATCTGGTACACATAGAAGGCTGCACTTAGTACTAAACA
1 TGTAACCTAACTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
* * * *
70456421 TGTAACCTAACCATCTGATACACGTAGTAGCGTGCACTTAGTACTACACA
1 TGTAACCTAACTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
** * * * * * * * * *
70456471 CATGA-TTGAAGTTGTCGGGTACGCATAGCAGCCTGCATTTGGTACTACACA
1 TGTAACCT-AA-CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
* *
70456522 TGCAACCTAACTATCTGGTACACGTAGTAGCCTGCACTTAGTA
1 TGTAACCTAACTATCTGGTACACATAGTAGCCTGCACTTAGTA
70456565 GTTCAGCATG
Statistics
Matches: 145, Mismatches: 44, Indels: 9
0.73 0.22 0.05
Matches are distributed among these distances:
49 39 0.27
50 69 0.48
51 36 0.25
52 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (50 bp):
TGTAACCTAACTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
Found at i:70456457 original size:50 final size:49
Alignment explanation
Indices: 70456334--70456466 Score: 151
Period size: 49 Copynumber: 2.7 Consensus size: 49
70456324 AACCCAAGCT
* * * * * *
70456334 ATCTGGTACGCATAGTAGCCTGTACTTAGTACTACACATGTGACTAACA
1 ATCTGATACACATAGTAGCGTGCACTTAGTACTAAACATGTAACTAACA
* * *
70456383 ATCTGGTACACATAGAAG-GCTGCACTTAGTACTAAACATGTAACCTAACC
1 ATCTGATACACATAGTAGCG-TGCACTTAGTACTAAACATGTAA-CTAACA
*
70456433 ATCTGATACACGTAGTAGCGTGCACTTAGTACTA
1 ATCTGATACACATAGTAGCGTGCACTTAGTACTA
70456467 CACACATGAT
Statistics
Matches: 71, Mismatches: 10, Indels: 5
0.83 0.12 0.06
Matches are distributed among these distances:
49 36 0.51
50 34 0.48
51 1 0.01
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.27
Consensus pattern (49 bp):
ATCTGATACACATAGTAGCGTGCACTTAGTACTAAACATGTAACTAACA
Found at i:70458648 original size:40 final size:40
Alignment explanation
Indices: 70458457--70458641 Score: 200
Period size: 40 Copynumber: 4.6 Consensus size: 40
70458447 CGAATGATGT
* * * *
70458457 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* **
70458497 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATTT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACT-ATAA
*
70458538 CC-GGCTAAG-CCCGAAGGCATTGCGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATT-TGTGCGAGTTACTATAA
*
70458576 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
70458617 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
70458642 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 13, Indels: 18
0.80 0.08 0.12
Matches are distributed among these distances:
39 14 0.11
40 82 0.67
41 27 0.22
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:70458648 original size:80 final size:79
Alignment explanation
Indices: 70458509--70458674 Score: 194
Period size: 80 Copynumber: 2.1 Consensus size: 79
70458499 GGACTAAGAT
** **
70458509 CCGAAGGCATTTGTGCGAGTTACTAATTTCCGGCTAAGCCCGAAGGCATTGCGTGCGAGTTA-CT
1 CCGAAGGCATTTGTGCGAGTTACTAATAACCGGCTAAGCCCGAAGGCATTGCGAACGAG-TAGCT
*
70458573 AAATCCGGGTTAAGTC
65 AAATCC-GGTTAAATC
* *
70458589 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT-TGAACGAGTAGC
1 CCGAAGGCATTTGTGCGAGTTACTAATAACC-GGCTAAG-CCCGAAGGCATTGCGAACGAGTAGC
* *
70458652 TATATCCGGTTAAATT
64 TAAATCCGGTTAAATC
70458668 CCGAAGG
1 CCGAAGG
70458675 TACGTGATTC
Statistics
Matches: 74, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
79 20 0.27
80 42 0.57
81 12 0.16
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATAACCGGCTAAGCCCGAAGGCATTGCGAACGAGTAGCTA
AATCCGGTTAAATC
Found at i:70466690 original size:40 final size:40
Alignment explanation
Indices: 70466493--70466676 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
70466483 CGAATGATGT
* * * *
70466493 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
70466533 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
70466573 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
70466611 TCCGGGTTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
70466652 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
70466677 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:70466698 original size:79 final size:79
Alignment explanation
Indices: 70466548--70466699 Score: 202
Period size: 79 Copynumber: 1.9 Consensus size: 79
70466538 CTAAGATCCG
* **
70466548 AAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATC
1 AAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAATC
70466613 CGGGTTAAGTCCCA
66 CGGGTTAAGTCCCA
* * *
70466627 AAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTAT
1 AAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTAA
70466690 ATCC-GGTTAA
63 ATCCGGGTTAA
70466700 ATTCCGAAGG
Statistics
Matches: 64, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
78 2 0.03
79 38 0.59
80 24 0.38
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.26
Consensus pattern (79 bp):
AAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAATC
CGGGTTAAGTCCCA
Found at i:70471378 original size:28 final size:28
Alignment explanation
Indices: 70471328--70471439 Score: 126
Period size: 27 Copynumber: 4.1 Consensus size: 28
70471318 AGCATGGCTG
* * *
70471328 CCAGA-ACAAATAA-TGTGACAGAGTCA
1 CCAGATACAGATAATTGTGGCAGAGCCA
*
70471354 CCAGATACAGATAATTGGGGCAGAGCCA
1 CCAGATACAGATAATTGTGGCAGAGCCA
*
70471382 CCAGA-ACAGAT-ATATGTGGTAGAGCCA
1 CCAGATACAGATAAT-TGTGGCAGAGCCA
*
70471409 CCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGATACAGATAATTGTGGCAGAGCCA
70471436 CCAG
1 CCAG
70471440 GACGCTTCCT
Statistics
Matches: 73, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
26 7 0.10
27 49 0.67
28 17 0.23
ACGTcount: A:0.38, C:0.21, G:0.24, T:0.17
Consensus pattern (28 bp):
CCAGATACAGATAATTGTGGCAGAGCCA
Found at i:70471419 original size:54 final size:54
Alignment explanation
Indices: 70471328--70471439 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
70471318 AGCATGGCTG
*
70471328 CCAGAACAAATAATGTGACAGAGTCACCAGATACAGATAATTGGGGCAGAGCCA
1 CCAGAACAAATAATGTGACAGAGCCACCAGATACAGATAATTGGGGCAGAGCCA
* ** * *
70471382 CCAGAACAGATATATGTGGTAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAAATA-ATGTGACAGAGCCACCAGATACAGATAATTGGGGCAGAGCCA
70471436 CCAG
1 CCAG
70471440 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 34 0.67
55 17 0.33
ACGTcount: A:0.38, C:0.21, G:0.24, T:0.17
Consensus pattern (54 bp):
CCAGAACAAATAATGTGACAGAGCCACCAGATACAGATAATTGGGGCAGAGCCA
Found at i:70471578 original size:26 final size:27
Alignment explanation
Indices: 70471540--70471607 Score: 84
Period size: 26 Copynumber: 2.5 Consensus size: 27
70471530 AGTCACAAGT
** *
70471540 AACCTTAGGGGTATAATGGTAATTTTGC
1 AACC-TAGGGGTATAACAGTAATTTTCC
70471568 -ACCTAGGGGTATAACAGTAATTTTCC
1 AACCTAGGGGTATAACAGTAATTTTCC
70471594 ATACCTAGGGGTAT
1 A-ACCTAGGGGTAT
70471608 TCAAGTAATT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
26 20 0.57
27 3 0.09
28 12 0.34
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.32
Consensus pattern (27 bp):
AACCTAGGGGTATAACAGTAATTTTCC
Found at i:70486346 original size:42 final size:42
Alignment explanation
Indices: 70486246--70486383 Score: 154
Period size: 43 Copynumber: 3.3 Consensus size: 42
70486236 ATATCTTAGT
* * * *
70486246 TATGGTCTTACATGTAATCTCTTATTGATGCCA-ATTCCCTAGC
1 TATGGTCTTACACGAAATCTCATATTGATGCCATA-TCCC-AGA
* * *
70486289 CATAGTCTTACACGAAATCTCATATTGACGCCATATCCCAGA
1 TATGGTCTTACACGAAATCTCATATTGATGCCATATCCCAGA
* *
70486331 TATGGTCTTACACGAAATCACATA-CGATGCCATATCCCAGA
1 TATGGTCTTACACGAAATCTCATATTGATGCCATATCCCAGA
*
70486372 TATGGCCTTACA
1 TATGGTCTTACA
70486384 TGTAGTCTTA
Statistics
Matches: 81, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
41 26 0.32
42 23 0.28
43 31 0.38
44 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (42 bp):
TATGGTCTTACACGAAATCTCATATTGATGCCATATCCCAGA
Found at i:70486373 original size:41 final size:42
Alignment explanation
Indices: 70486293--70486383 Score: 139
Period size: 41 Copynumber: 2.2 Consensus size: 42
70486283 CCTAGCCATA
* *
70486293 GTCTTACACGAAATCTCATATTGACGCCATATCCCAGATATG
1 GTCTTACACGAAATCACATATCGACGCCATATCCCAGATATG
*
70486335 GTCTTACACGAAATCACATA-CGATGCCATATCCCAGATATG
1 GTCTTACACGAAATCACATATCGACGCCATATCCCAGATATG
*
70486376 GCCTTACA
1 GTCTTACA
70486384 TGTAGTCTTA
Statistics
Matches: 45, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
41 26 0.58
42 19 0.42
ACGTcount: A:0.32, C:0.27, G:0.14, T:0.26
Consensus pattern (42 bp):
GTCTTACACGAAATCACATATCGACGCCATATCCCAGATATG
Found at i:70488998 original size:31 final size:31
Alignment explanation
Indices: 70488961--70489024 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
70488951 CGTTTCAGTC
*
70488961 AATAATGCTTTTAATTTCTTGAAACTTTGCT
1 AATAATGCTTTTAATATCTTGAAACTTTGCT
70488992 AATAATGCTTTTAATATCTTGAAACTTTGCT
1 AATAATGCTTTTAATATCTTGAAACTTTGCT
70489023 AA
1 AA
70489025 CATTTTTCGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.33, C:0.12, G:0.09, T:0.45
Consensus pattern (31 bp):
AATAATGCTTTTAATATCTTGAAACTTTGCT
Found at i:70495730 original size:15 final size:16
Alignment explanation
Indices: 70495710--70495740 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
70495700 TAAGATCTTA
70495710 CAATCATAA-CTTACT
1 CAATCATAACCTTACT
70495725 CAATCATAACCTTACT
1 CAATCATAACCTTACT
70495741 GAAGGTTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.39, C:0.29, G:0.00, T:0.32
Consensus pattern (16 bp):
CAATCATAACCTTACT
Found at i:70498365 original size:36 final size:37
Alignment explanation
Indices: 70498293--70498370 Score: 122
Period size: 36 Copynumber: 2.1 Consensus size: 37
70498283 TTATTACGAA
* *
70498293 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
*
70498330 GTCTTACCCGGACAAAATC-CCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
70498366 GTCTT
1 GTCTT
70498371 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
36 20 0.53
37 18 0.47
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
Found at i:70498615 original size:47 final size:47
Alignment explanation
Indices: 70498489--70498925 Score: 685
Period size: 47 Copynumber: 9.1 Consensus size: 47
70498479 CCCTTCGGGA
* * * * * *
70498489 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
70498536 CCTGTCACATATATATACACTTCCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70498585 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
70498632 CCTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70498683 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
70498730 CTTATCACATATAGACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70498777 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70498826 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70498873 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70498922 CTTA
1 CTTA
70498926 CTATCATTTC
Statistics
Matches: 364, Mismatches: 16, Indels: 18
0.91 0.04 0.05
Matches are distributed among these distances:
47 191 0.52
49 127 0.35
51 46 0.13
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:70498739 original size:22 final size:22
Alignment explanation
Indices: 70498711--70498786 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
70498701 TTTCACATTC
70498711 ATCACATCGGCCATTAGGCCTT
1 ATCACATCGGCCATTAGGCCTT
** * *** *
70498733 ATCACATATAGACACTTTCACATT
1 ATCACAT-CGGCCA-TTAGGCCTT
70498757 CATCACATCGGCCATTAGGCCTT
1 -ATCACATCGGCCATTAGGCCTT
70498780 ATCACAT
1 ATCACAT
70498787 ATATATACAC
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 14 0.38
23 8 0.22
24 8 0.22
25 7 0.19
ACGTcount: A:0.29, C:0.30, G:0.12, T:0.29
Consensus pattern (22 bp):
ATCACATCGGCCATTAGGCCTT
Found at i:70498923 original size:96 final size:97
Alignment explanation
Indices: 70498489--70498925 Score: 692
Period size: 96 Copynumber: 4.5 Consensus size: 97
70498479 CCCTTCGGGA
* * * * * * *
70498489 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATAT
*
70498552 ACACTTCCACATTCATCACATCGGCCATTAGGC
65 ACACTTTCACATTCATCACATCGGCCATTAGGC
*
70498585 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--A-ATAT
70498648 ATACACTTTCACATTCATCACATCGGCCATTAGGC
63 ATACACTTTCACATTCATCACATCGGCCATTAGGC
*
70498683 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATAGA
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATA
70498745 CACTTTCACATTCATCACATCGGCCATTAGGC
66 CACTTTCACATTCATCACATCGGCCATTAGGC
70498777 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATATA
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATA
70498841 CACTTTCACATTCATCACATCGGCCATTAGGC
66 CACTTTCACATTCATCACATCGGCCATTAGGC
70498873 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
70498926 CTATCATTTC
Statistics
Matches: 325, Mismatches: 10, Indels: 12
0.94 0.03 0.03
Matches are distributed among these distances:
94 46 0.14
95 1 0.00
96 184 0.57
98 94 0.29
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (97 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATA
CACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:70498924 original size:145 final size:143
Alignment explanation
Indices: 70498489--70498925 Score: 716
Period size: 145 Copynumber: 3.0 Consensus size: 143
70498479 CCCTTCGGGA
* * * * * * *
70498489 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
*
70498552 ACACTTCCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
64 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
70498617 CATCGGCCATTAGGC
129 CATCGGCCATTAGGC
*
70498632 CCTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
1 CTTATCAC--ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
*
70498697 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAGACACTTTCACATTCATCA
64 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
70498762 CATCGGCCATTAGGC
129 CATCGGCCATTAGGC
70498777 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
70498842 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCA
70498907 CATCGGCCATTAGGC
129 CATCGGCCATTAGGC
70498922 CTTA
1 CTTA
70498926 CTATCATTTC
Statistics
Matches: 276, Mismatches: 12, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
143 103 0.37
145 135 0.49
146 1 0.00
147 37 0.13
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (143 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGC
Found at i:70502120 original size:42 final size:43
Alignment explanation
Indices: 70502039--70502141 Score: 113
Period size: 42 Copynumber: 2.4 Consensus size: 43
70502029 GTCTTAGACG
* * *
70502039 TGGTCTTACATGTAATCAAATATTGATGCCACTGTCCCAGACAA
1 TGGTCTTACACGAAATCAAATATCGATGCCACTGTCCCAGA-AA
*
70502083 -GGTCTTACACGAAATCATATA-CGATGCCGA-TGTCCCAGAAA
1 TGGTCTTACACGAAATCAAATATCGATGCC-ACTGTCCCAGAAA
*
70502124 TGGTCTTATACGTAAATC
1 TGGTCTTACACG-AAATC
70502142 TCAAGTCAAT
Statistics
Matches: 51, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
41 2 0.04
42 25 0.49
43 24 0.47
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.28
Consensus pattern (43 bp):
TGGTCTTACACGAAATCAAATATCGATGCCACTGTCCCAGAAA
Found at i:70510868 original size:27 final size:27
Alignment explanation
Indices: 70510838--70511042 Score: 259
Period size: 27 Copynumber: 7.6 Consensus size: 27
70510828 ATATTGAGTC
* * * *
70510838 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
70510865 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
70510892 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
70510920 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
70510947 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
70510974 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
70511001 CGCACACTTAGTGCTACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
70511028 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
70511043 GTACAATTTA
Statistics
Matches: 157, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
27 133 0.85
28 24 0.15
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:70519241 original size:27 final size:27
Alignment explanation
Indices: 70519211--70519415 Score: 250
Period size: 27 Copynumber: 7.6 Consensus size: 27
70519201 ATATTGAGTC
* * * *
70519211 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
70519238 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
70519265 CGTACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
70519293 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
70519320 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
70519347 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
70519374 CGCACACTTAGTGCTACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
70519401 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
70519416 GTACAATTTA
Statistics
Matches: 155, Mismatches: 20, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
27 132 0.85
28 23 0.15
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:70524250 original size:42 final size:44
Alignment explanation
Indices: 70524160--70524254 Score: 126
Period size: 42 Copynumber: 2.2 Consensus size: 44
70524150 GTCTTAGACG
*
70524160 TGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAA
1 TGGTCTTACATGAAATCAAATATCGATGCCACTGTCCCAGACAA
* *
70524204 -GGTCTTACATGAAATCATATA-CGATGCCGA-TGTCGCAGA-AA
1 TGGTCTTACATGAAATCAAATATCGATGCC-ACTGTCCCAGACAA
70524245 TGGTCTTACA
1 TGGTCTTACA
70524255 CGTAAATCTC
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
41 2 0.04
42 24 0.52
43 20 0.43
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.27
Consensus pattern (44 bp):
TGGTCTTACATGAAATCAAATATCGATGCCACTGTCCCAGACAA
Found at i:70524470 original size:19 final size:19
Alignment explanation
Indices: 70524448--70524485 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
70524438 ATTTCCAAAA
70524448 CAATGAAACATAT-ATTATT
1 CAATGAAA-ATATGATTATT
*
70524467 CAATTAAAATATGATTATT
1 CAATGAAAATATGATTATT
70524486 TGCATATGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.47, C:0.08, G:0.05, T:0.39
Consensus pattern (19 bp):
CAATGAAAATATGATTATT
Found at i:70525705 original size:85 final size:83
Alignment explanation
Indices: 70525581--70525735 Score: 211
Period size: 85 Copynumber: 1.8 Consensus size: 83
70525571 TGCCATACCA
* * * * *
70525581 ACGCCATATCCCAAATATGTTCTTACATGTAATCTCATATCGATGCCAATACCCCAGCTATGGTT
1 ACGCCATATCCCAAATATGGTCTTACACGAAATCTCATAT-GATGCC-ATACCCCAGATATGGTC
70525646 TTACACGAAATCTCATATTG
64 TTACACGAAATCTCATATTG
* * * *
70525666 ACGCGATATCCTAAATATGGTCTTACACGAAATCTCATATGATGCCATATCCTAGATATGGTCTT
1 ACGCCATATCCCAAATATGGTCTTACACGAAATCTCATATGATGCCATACCCCAGATATGGTCTT
70525731 ACACG
66 ACACG
70525736 TAGTCTTAGT
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
83 20 0.33
84 6 0.10
85 35 0.57
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.31
Consensus pattern (83 bp):
ACGCCATATCCCAAATATGGTCTTACACGAAATCTCATATGATGCCATACCCCAGATATGGTCTT
ACACGAAATCTCATATTG
Found at i:70525728 original size:41 final size:41
Alignment explanation
Indices: 70525583--70525735 Score: 171
Period size: 42 Copynumber: 3.7 Consensus size: 41
70525573 CCATACCAAC
* * *
70525583 GCCATATCCCAAATATGTTCTTACATGTAATCTCATATCGAT
1 GCCATATCCCAAATATGGTCTTACACGAAATCTCATAT-GAT
* ** * *
70525625 GCCAATACCCCAGCTATGGTTTTACACGAAATCTCATATTGAC
1 GCC-ATATCCCAAATATGGTCTTACACGAAATCTCATA-TGAT
* *
70525668 GCGATATCCTAAATATGGTCTTACACGAAATCTCATATGAT
1 GCCATATCCCAAATATGGTCTTACACGAAATCTCATATGAT
* *
70525709 GCCATATCCTAGATATGGTCTTACACG
1 GCCATATCCCAAATATGGTCTTACACG
70525736 TAGTCTTAGT
Statistics
Matches: 92, Mismatches: 17, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
41 28 0.30
42 32 0.35
43 31 0.34
44 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.31
Consensus pattern (41 bp):
GCCATATCCCAAATATGGTCTTACACGAAATCTCATATGAT
Found at i:70529779 original size:27 final size:28
Alignment explanation
Indices: 70529731--70529843 Score: 135
Period size: 27 Copynumber: 4.2 Consensus size: 28
70529721 AGCATGGCTG
* * *
70529731 CCAGA-ACAGATA-TTGTGACAGAGTCA
1 CCAGATACAAATATTTGTGGCAGAGCCA
*
70529757 CCAGATACAAATA-TTATGGCAGAGCCA
1 CCAGATACAAATATTTGTGGCAGAGCCA
* *
70529784 CCAGAAAAAAATATTTGTGGCAGAGCCA
1 CCAGATACAAATATTTGTGGCAGAGCCA
*
70529812 CCAGAT-CAGATATTTGTGGCAGAGCCA
1 CCAGATACAAATATTTGTGGCAGAGCCA
70529839 CCAGA
1 CCAGA
70529844 ACACTTCCTC
Statistics
Matches: 75, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
26 5 0.07
27 52 0.69
28 18 0.24
ACGTcount: A:0.38, C:0.21, G:0.22, T:0.19
Consensus pattern (28 bp):
CCAGATACAAATATTTGTGGCAGAGCCA
Found at i:70532223 original size:48 final size:48
Alignment explanation
Indices: 70532167--70532258 Score: 123
Period size: 48 Copynumber: 1.9 Consensus size: 48
70532157 ATAGCCCAAC
* *
70532167 TATGGTCTTACACGATG-TCTCATATCGATGCCAATGCCATATCCTAGA
1 TATGGTCTTACACG-GGATCACATATCGATGCCAATGCCATATCCTAGA
** *
70532215 TATGGTCTTACGTGGGATCACATGTCGATGCCAATGCCATATCC
1 TATGGTCTTACACGGGATCACATATCGATGCCAATGCCATATCC
70532259 CATGCATCGT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
47 1 0.03
48 37 0.97
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (48 bp):
TATGGTCTTACACGGGATCACATATCGATGCCAATGCCATATCCTAGA
Found at i:70532271 original size:48 final size:46
Alignment explanation
Indices: 70532191--70532332 Score: 144
Period size: 48 Copynumber: 3.0 Consensus size: 46
70532181 ATGTCTCATA
* * *
70532191 TCGATGCCAATGCCATATCCTAGATATGGTCTTACGTGGGATCACATG
1 TCGATGCCAATGCCATATCCCAGACAT-GTCTTACATGGGATCACA-G
**
70532239 TCGATGCCAATGCCATATCCCATG-CATCGTCTTGTATGGGATCTCACAG
1 TCGATGCCAATGCCATATCCCA-GACAT-GTCTTACATGGGA--TCACAG
* *
70532288 -CGCTGCCAATGCCATGTCCCAGACATGCTCTTACATGGGATCACA
1 TCGATGCCAATGCCATATCCCAGACATG-TCTTACATGGGATCACA
70532333 CATAACCCTA
Statistics
Matches: 79, Mismatches: 10, Indels: 12
0.78 0.10 0.12
Matches are distributed among these distances:
46 5 0.06
47 2 0.03
48 65 0.82
49 2 0.03
50 5 0.06
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (46 bp):
TCGATGCCAATGCCATATCCCAGACATGTCTTACATGGGATCACAG
Found at i:70536617 original size:46 final size:46
Alignment explanation
Indices: 70536480--70536701 Score: 157
Period size: 46 Copynumber: 4.8 Consensus size: 46
70536470 TCATTTGTGT
* * * * * *
70536480 GAGCTAGTGTAAGAAATGTCTGGAACATGCATCGGCCAC-ATTATGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGA-GACGA
* * * *
70536526 GAGCTAGTGTAAGACCATGTTTGGGATATGGCATCAGCATTGAGACGA
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCGAGACGA
* *
70536574 GTGCTAGTGTAAGACATGTCTAGGACATGCATCAGCCTCGAGACG-
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGACGA
* * * * * * *
70536619 GAAGCCAGTGCAAGACATATTTGGGATATGCATC-GACTACGAGA-TA
1 G-AGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCT-CGAGACGA
* *
70536665 -TGTTAGTGTAAGACCATGTCTGGGACATGGCATCAGC
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGC
70536702 ACCTGACCCC
Statistics
Matches: 134, Mismatches: 33, Indels: 17
0.73 0.18 0.09
Matches are distributed among these distances:
44 9 0.07
45 15 0.11
46 64 0.48
47 22 0.16
48 23 0.17
49 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (46 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGACGA
Found at i:70541566 original size:48 final size:46
Alignment explanation
Indices: 70541505--70541874 Score: 318
Period size: 48 Copynumber: 7.8 Consensus size: 46
70541495 CACATTATGA
* *
70541505 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGG
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-TTGAGA-GT
70541553 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGAGATGT
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CTTGAGA-GT
* **
70541601 GAGCTAGTGTAAGACCATGTTTGGGACATGGCATTAGCTATGAGA-T
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCT-TGAGAGT
* * * **
70541647 GTGTTAGTGTAAGACCATGTTTGGGACATGGCATTAGCTATGAGA-T
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCT-TGAGAGT
* * * * *
70541693 GTGTTAGTGTAAGACCATGTTTGGGACATGGCATCGGCATGGATATGT
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-TTGAGA-GT
* * * * *
70541741 GAGAGCCAGTGTAAGACCATGTCTAGGACATGGCGTCGGCCTCGATTGCGAT
1 --GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CTTGA--GAG-T
* *
70541793 -AGAC-GGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATGTA-T
1 GAG-CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGA-G-AGT
* * * *
70541839 TAGCCAGTGTAAGACTATGTCTGGGGCATGGCATCG
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCG
70541875 ACATCCTACC
Statistics
Matches: 277, Mismatches: 30, Indels: 31
0.82 0.09 0.09
Matches are distributed among these distances:
46 86 0.31
47 35 0.13
48 87 0.31
49 31 0.11
50 35 0.13
51 2 0.01
52 1 0.00
ACGTcount: A:0.25, C:0.17, G:0.32, T:0.26
Consensus pattern (46 bp):
GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGAGAGT
Found at i:70541615 original size:96 final size:93
Alignment explanation
Indices: 70541461--70541874 Score: 331
Period size: 96 Copynumber: 4.4 Consensus size: 93
70541451 TGACATGTGT
** ** * * *
70541461 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAACC-ACATTATGAGAGCCAGTGTAAGACCAT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGA-GATGTGAGCTAGTGTAAGACCAT
70541523 GTCTGGGACATGGCATCGGCATTGAGACGGGA
65 GTCTGGGACATGGCATCGGC-TTGAGA--GGA
70541555 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGAGATGTGAGCTAGTGTAAGACCATG
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGAGATGTGAGCTAGTGTAAGACCATG
* ** * *
70541620 TTTGGGACATGGCATTAGCTATGAGATGT
66 TCTGGGACATGGCATCGGCT-TGAGAGGA
* * ** *
70541649 GTTAGTGTAAGACCATGTTTGGGACATGGCATTAG-CTATGAGATGT--GTTAGTGTAAGACCAT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-TGAGATGTGAGCTAGTGTAAGACCAT
* * *
70541711 GTTTGGGACATGGCATCGGCATGGATATGTGAGA
65 GTCTGGGACATGGCATCGGC-TTG--A-GAG-GA
* * * * * * *
70541745 GCCAGTGTAAGACCATGTCTAGGACATGGCGTCGGCCTCGA-TTGCGATAGAC-GGTGTAAGACC
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGAGATGTG--AG-CTAGTGTAAGACC
* **
70541808 ATGTCTGGGACATGGCATCGACTTGATGTATTA
63 ATGTCTGGGACATGGCATCGGCTTGA-G-AGGA
* * *
70541841 GCCAGTGTAAGACTATGTCTGGGGCATGGCATCG
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCG
70541875 ACATCCTACC
Statistics
Matches: 258, Mismatches: 45, Indels: 32
0.77 0.13 0.10
Matches are distributed among these distances:
92 34 0.13
93 3 0.01
94 53 0.21
95 18 0.07
96 114 0.44
97 3 0.01
98 2 0.01
99 31 0.12
ACGTcount: A:0.25, C:0.17, G:0.31, T:0.26
Consensus pattern (93 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGAGATGTGAGCTAGTGTAAGACCATG
TCTGGGACATGGCATCGGCTTGAGAGGA
Found at i:70541672 original size:46 final size:46
Alignment explanation
Indices: 70541458--70541727 Score: 280
Period size: 46 Copynumber: 5.8 Consensus size: 46
70541448 GGGTGACATG
* * * *
70541458 TGTGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAACCACATTATGA
1 TGTGCTAGTGTAAGACCATGTTTGGGACATGGCATC-AGC-TATGA-GA
* * * *
70541505 -GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-ATTGAGA
1 TGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCAGCTA-TGAGA
* * * *
70541550 CGGGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-TGAGA
1 --TGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCAG-CTATGAGA
*
70541598 TGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATTAGCTATGAGA
1 TGT--GCTAGTGTAAGACCATGTTTGGGACATGGCATCAGCTATGAGA
* *
70541646 TGTGTTAGTGTAAGACCATGTTTGGGACATGGCATTAGCTATGAGA
1 TGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCAGCTATGAGA
*
70541692 TGTGTTAGTGTAAGACCATGTTTGGGACATGGCATC
1 TGTGCTAGTGTAAGACCATGTTTGGGACATGGCATC
70541728 GGCATGGATA
Statistics
Matches: 199, Mismatches: 13, Indels: 23
0.85 0.06 0.10
Matches are distributed among these distances:
45 3 0.02
46 92 0.46
47 17 0.09
48 86 0.43
49 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.31, T:0.27
Consensus pattern (46 bp):
TGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCAGCTATGAGA
Found at i:70541741 original size:46 final size:46
Alignment explanation
Indices: 70541510--70541874 Score: 272
Period size: 46 Copynumber: 7.7 Consensus size: 46
70541500 TATGAGAGCC
*** *
70541510 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGGGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCA-TG-GATATGTGCT
* * *
70541558 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGAGATGTGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CATG-GATATGTGCT
* ** * *
70541606 AGTGTAAGACCATGTTTGGGACATGGCATTAGCTAT-GAGATGTGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-ATGGATATGTGCT
* ** * *
70541652 AGTGTAAGACCATGTTTGGGACATGGCATTAGCTAT-GAGATGTGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-ATGGATATGTGCT
* *
70541698 AGTGTAAGACCATGTTTGGGACATGGCATCGGCATGGATATGTGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATGGATATGT----GCT
* * * * * *
70541748 AGTGTAAGACCATGTCTAGGACATGGCGTCGGCCTCGAT-TGCGAT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATGGATATGTGCT
* * *
70541793 AGACGGTGTAAGACCATGTCTGGGACATGGCATCGAC-TTGATGTAT-TAGCC
1 --A--GTGTAAGACCATGTCTGGGACATGGCATCGGCATGGA--TATGT-GCT
* *
70541844 AGTGTAAGACTATGTCTGGGGCATGGCATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
70541875 ACATCCTACC
Statistics
Matches: 269, Mismatches: 33, Indels: 31
0.81 0.10 0.09
Matches are distributed among these distances:
45 3 0.01
46 89 0.33
47 30 0.11
48 76 0.28
49 33 0.12
50 36 0.13
51 2 0.01
ACGTcount: A:0.25, C:0.17, G:0.32, T:0.26
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCATGGATATGTGCT
Found at i:70541752 original size:142 final size:141
Alignment explanation
Indices: 70541510--70541774 Score: 363
Period size: 142 Copynumber: 1.9 Consensus size: 141
70541500 TATGAGAGCC
*
70541510 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGGGAGCTAGTGTAAGACCATGTCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGAC-GGAGCTAGTGTAAGACCATGTCT
* * * * *
70541575 GGGACATGGCATCGGCCTTGAGATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATTAGCT
65 GGGACATGGCATCGGCATGGAGATGTGAGCCAGTGTAAGACCATGTCTAGGACATGGCATTAGCT
70541640 ATGAGATGTGTT
130 ATGAGATGTGTT
* * * * * *
70541652 AGTGTAAGACCATGTTTGGGACATGGCATTAGC-TATGAGA-TGTGTTAGTGTAAGACCATGTTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCAT-TGAGACGGAGCTAGTGTAAGACCATGTCT
*
70541715 GGGACATGGCATCGGCATGGATATGTGAGAGCCAGTGTAAGACCATGTCTAGGACATGGC
65 GGGACATGGCATCGGCATGGAGATGT--GAGCCAGTGTAAGACCATGTCTAGGACATGGC
70541775 GTCGGCCTCG
Statistics
Matches: 107, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
140 42 0.39
141 1 0.01
142 64 0.60
ACGTcount: A:0.26, C:0.15, G:0.32, T:0.26
Consensus pattern (141 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGACGGAGCTAGTGTAAGACCATGTCTG
GGACATGGCATCGGCATGGAGATGTGAGCCAGTGTAAGACCATGTCTAGGACATGGCATTAGCTA
TGAGATGTGTT
Found at i:70541812 original size:49 final size:50
Alignment explanation
Indices: 70541464--70541827 Score: 216
Period size: 46 Copynumber: 7.6 Consensus size: 50
70541454 CATGTGTGCT
** *
70541464 AGTGTAAGA-CATGTCTGGGACAT-GCATCAACCA-C-ATTAT--GAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GGCATCGA-TATGCGAGAGAC
* * *
70541510 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGA--CGGGAG-C
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGCGAGAGAC
* * * *
70541557 TAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGAGAT--GTGAG-C
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGCGAGAGAC
* * * * * **
70541605 TAGTGTAAGACCATGTTTGGGACATGGCAT-----TAGCTATGAGATGTGTT
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGCGA-GAGAC
* * * * * **
70541652 AGTGTAAGACCATGTTTGGGACATGGCAT-----TAGCTATGAGATGTGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGCGA-GAGAC
* * * *
70541698 AGTGTAAGACCATGTTTGGGACATGGCATCGGCATGGATATGTGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGCGAGAGAC
* * * *
70541748 AGTGTAAGACCATGTCTAGGACATGGCGTCGGCCTCGAT-TGCGATAGAC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGCGAGAGAC
*
70541797 GGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
70541828 ACTTGATGTA
Statistics
Matches: 271, Mismatches: 31, Indels: 29
0.82 0.09 0.09
Matches are distributed among these distances:
43 4 0.01
45 1 0.00
46 86 0.32
47 17 0.06
48 83 0.31
49 36 0.13
50 36 0.13
51 8 0.03
ACGTcount: A:0.26, C:0.17, G:0.32, T:0.25
Consensus pattern (50 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGCGAGAGAC
Found at i:70546009 original size:83 final size:83
Alignment explanation
Indices: 70545865--70546025 Score: 227
Period size: 83 Copynumber: 1.9 Consensus size: 83
70545855 TAACAGTGAT
* *
70545865 ATATCAGGCTTATTGCCTAGCAGGTTTTTATGCCGGTGTAAGATATCAGGCTTATTGCCTAGCAG
1 ATATCAGGCTTATTGCCTAGCAGGTCTTTATGCCGGTGTAAGATATCAGGCTTATTACCTAGCAG
*
70545930 GCTTTGATGCCGGTATATG
66 GCTCTG-TGCCGGTATATG
* * * *
70545949 ATATCAGGCTTATTGTCTAGCAGG-CTTTATGTCGGTGTATTGA-ATCAGGTTTATTACCTAGCA
1 ATATCAGGCTTATTGCCTAGCAGGTCTTTATGCCGGTGTA-AGATATCAGGCTTATTACCTAGCA
70546012 GGCTCTGTGCCGGT
65 GGCTCTGTGCCGGT
70546026 GTTTTATACA
Statistics
Matches: 69, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
82 7 0.10
83 37 0.54
84 25 0.36
ACGTcount: A:0.20, C:0.18, G:0.26, T:0.35
Consensus pattern (83 bp):
ATATCAGGCTTATTGCCTAGCAGGTCTTTATGCCGGTGTAAGATATCAGGCTTATTACCTAGCAG
GCTCTGTGCCGGTATATG
Found at i:70546010 original size:41 final size:41
Alignment explanation
Indices: 70545865--70546027 Score: 211
Period size: 42 Copynumber: 3.9 Consensus size: 41
70545855 TAACAGTGAT
* *
70545865 ATATCAGGCTTATTGCCTAGCAGGTTTTTATGCCGGTGTAAG
1 ATATCAGGCTTATTGCCTAGCAGG-CTTTATGCCGGTGTATG
*
70545907 ATATCAGGCTTATTGCCTAGCAGGCTTTGATGCCGGTATATG
1 ATATCAGGCTTATTGCCTAGCAGGCTTT-ATGCCGGTGTATG
* *
70545949 ATATCAGGCTTATTGTCTAGCAGGCTTTATGTCGGTGTATTG
1 ATATCAGGCTTATTGCCTAGCAGGCTTTATGCCGGTGTA-TG
* * * *
70545991 A-ATCAGGTTTATTACCTAGCAGGCTCTGTGCCGGTGT
1 ATATCAGGCTTATTGCCTAGCAGGCTTTATGCCGGTGT
70546028 TTTATACAAG
Statistics
Matches: 107, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
41 42 0.39
42 65 0.61
ACGTcount: A:0.20, C:0.18, G:0.26, T:0.36
Consensus pattern (41 bp):
ATATCAGGCTTATTGCCTAGCAGGCTTTATGCCGGTGTATG
Found at i:70552804 original size:27 final size:26
Alignment explanation
Indices: 70552787--70552856 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 26
70552777 ATATTAAGTC
70552787 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATAT-ATCAACT
*
70552814 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATAT-ATC-AACT
*
70552842 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
70552857 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (26 bp):
CGCACACTCAGTGCTATATATCAACT
Found at i:70552850 original size:28 final size:28
Alignment explanation
Indices: 70552787--70552881 Score: 129
Period size: 28 Copynumber: 3.4 Consensus size: 28
70552777 ATATTAAGTC
*
70552787 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
70552814 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
70552842 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
70552871 CGCACACTTAG
1 CGCACACTTAG
70552882 CGCCAATCTC
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.36
28 23 0.38
29 16 0.26
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:70560776 original size:28 final size:29
Alignment explanation
Indices: 70560736--70560801 Score: 89
Period size: 28 Copynumber: 2.3 Consensus size: 29
70560726 TCGCTTTGCT
* *
70560736 CACACTTAGTGCTATATAA-TCAAACTCG
1 CACACTTAGTGCTATACAATTCAAACCCG
* *
70560764 CACACTTAGTGCTGTACAATTTAAACCCG
1 CACACTTAGTGCTATACAATTCAAACCCG
70560793 CACACTTAG
1 CACACTTAG
70560802 CGCCAATCTC
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
28 17 0.52
29 16 0.48
ACGTcount: A:0.33, C:0.27, G:0.12, T:0.27
Consensus pattern (29 bp):
CACACTTAGTGCTATACAATTCAAACCCG
Found at i:70593405 original size:66 final size:67
Alignment explanation
Indices: 70593276--70593405 Score: 165
Period size: 66 Copynumber: 1.9 Consensus size: 67
70593266 GGTATGTATC
*
70593276 CCATCTAGACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCGCATGAGTGATTCCAAGTGA
1 CCATCTAGACAAGAGAGCTAC--G-GAGATAAATG-AGCTAGGTCGCATGAGTGATACCAAGTGA
70593341 AGGACA
62 AGGACA
* * *
70593347 CCATGTAGACAAGAGAGCTAC-GAGATAAATCG-GCTAGGTCGCATGAGTGGTACTAAGTG
1 CCATCTAGACAAGAGAGCTACGGAGATAAAT-GAGCTAGGTCGCATGAGTGATACCAAGTG
70593406 TTCACCATGT
Statistics
Matches: 54, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
66 24 0.44
67 9 0.17
68 1 0.02
71 20 0.37
ACGTcount: A:0.34, C:0.17, G:0.29, T:0.20
Consensus pattern (67 bp):
CCATCTAGACAAGAGAGCTACGGAGATAAATGAGCTAGGTCGCATGAGTGATACCAAGTGAAGGA
CA
Found at i:70595466 original size:48 final size:47
Alignment explanation
Indices: 70595404--70595660 Score: 232
Period size: 48 Copynumber: 5.4 Consensus size: 47
70595394 TATGAGATCC
70595404 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGGGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGA-GAGGGCT
* * * * *
70595452 AGTGTAAGATCATGTCTGGGACATGGCATCGGCCTCGATATATGGGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAGA-GGGCT
* * * * *
70595500 AGTGTAAGACCATGTTTGGGACATGGCATTGGC-TATGAGA-TGTGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAT-TGAGAGAGGGCT
* * * * *
70595546 AGTGTAAGACCATGTCTGGGACATAGCATCGGCATAGATATGTGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTG--A-GAGAGGGCT
* * * *** *
70595596 AGCGTAAGACCATGTCTGGGACATGGAATCGAC-TTGATTTATGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAGA-GGGCT
70595643 AGTGTAAGACCATGTCTG
1 AGTGTAAGACCATGTCTG
70595661 TATTCTGAAT
Statistics
Matches: 170, Mismatches: 31, Indels: 17
0.78 0.14 0.08
Matches are distributed among these distances:
46 36 0.21
47 25 0.15
48 75 0.44
49 3 0.02
50 31 0.18
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAGAGGGCT
Found at i:70595520 original size:96 final size:95
Alignment explanation
Indices: 70595355--70595626 Score: 322
Period size: 96 Copynumber: 2.9 Consensus size: 95
70595345 TGACATGTGT
* * *
70595355 GCTAGTGTAAGAT-ATGTCTGGGACATGCATTGGCC-AAAT-TATGAGATCCAGTGTAAGACCAT
1 GCTAGTGTAAGATCATGTCTGGGACATGCATCGGCCTAGATATATGAGAGCCAGTGTAAGACCAT
70595417 GTCTGGGACATGGCATCGGC-ATTGAGACGAGG
66 GTCTGGGACATGGCATCGGCTA-TGAGA--AGG
* *
70595449 GCTAGTGTAAGATCATGTCTGGGACATGGCATCGGCCTCGATATATG-G-GCTAGTGTAAGACCA
1 GCTAGTGTAAGATCATGTCTGGGACAT-GCATCGGCCTAGATATATGAGAGCCAGTGTAAGACCA
* * * *
70595512 TGTTTGGGACATGGCATTGGCTATGAGATGT
65 TGTCTGGGACATGGCATCGGCTATGAGAAGG
* * * * *
70595543 GTTAGTGTAAGACCATGTCTGGGACATAGCATCGGCATAGATATGTGAGAGCCAGCGTAAGACCA
1 GCTAGTGTAAGATCATGTCTGGGACAT-GCATCGGCCTAGATATATGAGAGCCAGTGTAAGACCA
*
70595608 TGTCTGGGACATGGAATCG
65 TGTCTGGGACATGGCATCG
70595627 ACTTGATTTA
Statistics
Matches: 151, Mismatches: 20, Indels: 12
0.83 0.11 0.07
Matches are distributed among these distances:
94 55 0.36
95 14 0.09
96 74 0.49
97 4 0.03
98 4 0.03
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.25
Consensus pattern (95 bp):
GCTAGTGTAAGATCATGTCTGGGACATGCATCGGCCTAGATATATGAGAGCCAGTGTAAGACCAT
GTCTGGGACATGGCATCGGCTATGAGAAGG
Found at i:70603643 original size:30 final size:30
Alignment explanation
Indices: 70603602--70603660 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
70603592 CATCAGGGGT
*
70603602 CACACGGCCATATACCATGACCATGTGTCA
1 CACACGACCATATACCATGACCATGTGTCA
*
70603632 CACACGACCATATACCATGACCGTGTGTC
1 CACACGACCATATACCATGACCATGTGTC
70603661 GCATACGGCT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.29, C:0.34, G:0.17, T:0.20
Consensus pattern (30 bp):
CACACGACCATATACCATGACCATGTGTCA
Found at i:70608728 original size:47 final size:47
Alignment explanation
Indices: 70608676--70609318 Score: 1052
Period size: 47 Copynumber: 13.6 Consensus size: 47
70608666 GATAATTGTG
* * *
70608676 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGAAGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
70608723 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
70608770 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
70608817 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
70608866 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
70608913 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
70608960 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
70609007 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
70609054 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
70609103 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
70609152 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
70609199 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
70609246 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
70609293 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
70609319 TCCCGAAGGG
Statistics
Matches: 561, Mismatches: 31, Indels: 8
0.94 0.05 0.01
Matches are distributed among these distances:
47 422 0.75
49 139 0.25
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:70608839 original size:143 final size:143
Alignment explanation
Indices: 70608676--70609318 Score: 1064
Period size: 143 Copynumber: 4.5 Consensus size: 143
70608666 GATAATTGTG
*
70608676 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGAAGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
70608739 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
*
70608804 GCCAATGTGATGA
131 GCCGATGTGATGA
70608817 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
70608882 ATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
70608947 GCCGATGTGATGA
131 GCCGATGTGATGA
*
70608960 ATGTGAAAGTG--TATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
70609023 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAA
70609088 TGGCCGATGTGATGA
129 TGGCCGATGTGATGA
70609103 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
70609168 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATGAGGCCTAATG
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
70609233 GCCGATGTGATGA
131 GCCGATGTGATGA
* * * * * * * *
70609246 ATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
70609309 ATGTGATAAG
66 ATGTGATAAG
70609319 TCCCGAAGGG
Statistics
Matches: 473, Mismatches: 23, Indels: 12
0.93 0.05 0.02
Matches are distributed among these distances:
141 149 0.32
142 2 0.00
143 232 0.49
145 90 0.19
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (143 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
GCCGATGTGATGA
Found at i:70623231 original size:40 final size:40
Alignment explanation
Indices: 70623176--70623437 Score: 422
Period size: 40 Copynumber: 6.6 Consensus size: 40
70623166 TATTCGAATG
*
70623176 ATATCCGGGCTAAGTCTCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
70623216 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
70623256 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
70623296 ATATCCGGGCTAAGTCTCGAAGGCATTTGTGCTAGTAATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
70623336 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
70623376 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAG-TGACT
* *
70623416 ATATCC-GGCTAAATCCTGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
70623438 TACTTGGGTT
Statistics
Matches: 209, Mismatches: 10, Indels: 7
0.92 0.04 0.03
Matches are distributed among these distances:
38 1 0.00
39 12 0.06
40 193 0.92
41 3 0.01
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:70627501 original size:28 final size:28
Alignment explanation
Indices: 70627461--70627518 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
70627451 TTGGTGCAGC
70627461 TGGGTCACATGGGTGTGTCTGATACCCG
1 TGGGTCACATGGGTGTGTCTGATACCCG
70627489 TGGGTCACATGGGTGTGTCTGATACCCG
1 TGGGTCACATGGGTGTGTCTGATACCCG
70627517 TG
1 TG
70627519 TAAGGCACAC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.14, C:0.21, G:0.36, T:0.29
Consensus pattern (28 bp):
TGGGTCACATGGGTGTGTCTGATACCCG
Found at i:70633250 original size:30 final size:29
Alignment explanation
Indices: 70633216--70633279 Score: 110
Period size: 30 Copynumber: 2.2 Consensus size: 29
70633206 ATGAATCGGA
*
70633216 AGCTTTGGCACTAAGTGTGCGATTTAAACT
1 AGCTTTGGCACTAAGTGTGCAATTT-AACT
70633246 AGCTTTGGCACTAAGTGTGCAATTTAACT
1 AGCTTTGGCACTAAGTGTGCAATTTAACT
70633275 AGCTT
1 AGCTT
70633280 CGGCTACTTG
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 9 0.27
30 24 0.73
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34
Consensus pattern (29 bp):
AGCTTTGGCACTAAGTGTGCAATTTAACT
Found at i:70637096 original size:26 final size:26
Alignment explanation
Indices: 70637067--70637120 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
70637057 TTCTCTCGAT
70637067 CCATATAATAG-GAAGCTCACAAAGAG
1 CCAT-TAATAGAGAAGCTCACAAAGAG
*
70637093 CCATTAATCGAGAAGCTCACAAAGAG
1 CCATTAATAGAGAAGCTCACAAAGAG
70637119 CC
1 CC
70637121 TTTTAGGAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 5 0.19
26 21 0.81
ACGTcount: A:0.43, C:0.24, G:0.19, T:0.15
Consensus pattern (26 bp):
CCATTAATAGAGAAGCTCACAAAGAG
Found at i:70641496 original size:43 final size:42
Alignment explanation
Indices: 70641443--70641547 Score: 120
Period size: 43 Copynumber: 2.5 Consensus size: 42
70641433 ATATACAATG
* * *
70641443 CCAACGTCCCAGACATGGTCTTACATGTAATCAAACATCGATA
1 CCAATGTCCCAGACATGGTCTTACACGAAATCAAACA-CGATA
* * * * *
70641486 CCACTGTCCCAGACAGGGTCTTACACGAAATCAGATACGATG
1 CCAATGTCCCAGACATGGTCTTACACGAAATCAAACACGATA
*
70641528 CCAATGTCCCAAACATGGTC
1 CCAATGTCCCAGACATGGTC
70641548 ATAGACACAA
Statistics
Matches: 51, Mismatches: 11, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
42 21 0.41
43 30 0.59
ACGTcount: A:0.32, C:0.30, G:0.17, T:0.21
Consensus pattern (42 bp):
CCAATGTCCCAGACATGGTCTTACACGAAATCAAACACGATA
Found at i:70657926 original size:40 final size:40
Alignment explanation
Indices: 70657848--70658074 Score: 196
Period size: 40 Copynumber: 5.5 Consensus size: 40
70657838 ACCCAAGTAT
*
70657848 CTTCGGGAT-TTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGTC-ACTAGCACAAATGC
**
70657887 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
*
70657927 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * *
70657967 CTTCAGGACTTTGCCCAGG-TATAG-CAACTACTCGTACAAATGC
1 CTTCGGGTCTTAGCCC-GGATATAGTC-ACTA---GCACAAATGC
* * *
70658010 CTTCGGGACTTAGCTCGGGTATAG-CAACTACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* *
70658053 CTTCGCGACTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
70658075 CATTCGAATA
Statistics
Matches: 163, Mismatches: 16, Indels: 14
0.84 0.08 0.07
Matches are distributed among these distances:
38 1 0.01
39 12 0.07
40 81 0.50
41 3 0.02
42 2 0.01
43 64 0.39
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:70657990 original size:80 final size:81
Alignment explanation
Indices: 70657848--70658074 Score: 241
Period size: 80 Copynumber: 2.8 Consensus size: 81
70657838 ACCCAAGTAT
* * * *
70657848 CTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCAGGACTTAGCCCGGATATAG-
**
70657912 C-ACTA-GCATGAATGC
65 CAACTACGCACAAATGC
*
70657927 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCAGGACTTTGCCCAGG-TATA
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCAGGACTTAGCCC-GGATATA
*
70657990 GCAACTACTCGTACAAATGC
64 GCAACTA--CGCACAAATGC
* *
70658010 CTTCGGGACTTAGCTCGGGTATAGCAACTACTCGCACAAATGCCTTC-GCGACTTAGCCCGGATA
1 CTTCGGGACTTAGCCCGGATATAGCAACTA---GCACAAATGCCTTCAG-GACTTAGCCCGGATA
70658074 T
62 T
70658075 CATTCGAATA
Statistics
Matches: 124, Mismatches: 11, Indels: 19
0.81 0.07 0.12
Matches are distributed among these distances:
79 13 0.10
80 45 0.36
81 3 0.02
82 1 0.01
83 33 0.27
85 3 0.02
86 26 0.21
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (81 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCAGGACTTAGCCCGGATATAGC
AACTACGCACAAATGC
Found at i:70662316 original size:49 final size:49
Alignment explanation
Indices: 70662239--70662336 Score: 178
Period size: 49 Copynumber: 2.0 Consensus size: 49
70662229 AAGCAGTTTT
70662239 GGGTATATCCGAATCTCGAATTCACAACTGATAATAGCTCGATCTCAAA
1 GGGTATATCCGAATCTCGAATTCACAACTGATAATAGCTCGATCTCAAA
* *
70662288 GGGTATATCTGAATCTCGAATTCGCAACTGATAATAGCTCGATCTCAAA
1 GGGTATATCCGAATCTCGAATTCACAACTGATAATAGCTCGATCTCAAA
70662337 TCTATCTTTG
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (49 bp):
GGGTATATCCGAATCTCGAATTCACAACTGATAATAGCTCGATCTCAAA
Found at i:70666060 original size:40 final size:40
Alignment explanation
Indices: 70665983--70666205 Score: 290
Period size: 40 Copynumber: 5.5 Consensus size: 40
70665973 CCCAAGTATT
* *
70665983 TTCGGGATTTAG-CCGGATATAG-CAACTTGCACAAATGCC
1 TTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCC
* * **
70666022 TTCGGGTCTTAGCCCAGATATAGTCACTAGCATGAATGCC
1 TTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCC
70666062 TTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCC
1 TTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCC
* *
70666102 TTCGGGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATTCC
1 TTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGCC
* *
70666145 TTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCC
1 TTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCC
70666185 TTCGGGACTTAGCCCGGATAT
1 TTCGGGACTTAGCCCGGATAT
70666206 CATCCGAATA
Statistics
Matches: 161, Mismatches: 16, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
39 11 0.07
40 114 0.71
41 1 0.01
43 35 0.22
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
TTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCC
Found at i:70666178 original size:83 final size:80
Alignment explanation
Indices: 70665983--70666205 Score: 306
Period size: 83 Copynumber: 2.8 Consensus size: 80
70665973 CCCAAGTATT
* * * *
70665983 TTCGGGATTTAG-CCGGATATAGCAACTTGCACAAATGCCTTCGGGTCTTAGCCCAGATATAGTC
1 TTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTC
**
70666047 ACTAGCATGAATGCC
66 ACTAGCACAAATGCC
* * *
70666062 TTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG-C
1 TTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTC
*
70666126 AACTACTCGCACAAATTCC
66 -ACTA---GCACAAATGCC
70666145 TTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 TTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
70666206 CATCCGAATA
Statistics
Matches: 126, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
79 12 0.10
80 48 0.38
83 66 0.52
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (80 bp):
TTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTC
ACTAGCACAAATGCC
Found at i:70667972 original size:42 final size:43
Alignment explanation
Indices: 70667925--70668029 Score: 124
Period size: 43 Copynumber: 2.5 Consensus size: 43
70667915 GAGATTTACG
* *
70667925 TGTAAGACCATGTCTGGGACA-TCAGCATCG-TATTTGATTTCA
1 TGTAAGACCATGTCTGGGACAGT-AGCATCGATATTTGAATACA
* * *
70667967 TGTAAGACCCTGTCTGGGATAGTGGCATCGATATTTGAATACA
1 TGTAAGACCATGTCTGGGACAGTAGCATCGATATTTGAATACA
* *
70668010 TGTAAGACCACGTCTTGGAC
1 TGTAAGACCATGTCTGGGAC
70668030 GTTGGCATTG
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
42 25 0.48
43 27 0.52
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACAGTAGCATCGATATTTGAATACA
Found at i:70670997 original size:41 final size:41
Alignment explanation
Indices: 70670952--70671087 Score: 170
Period size: 41 Copynumber: 3.3 Consensus size: 41
70670942 ATTTCCCCTA
* * *
70670952 TTTGTACTTCGATACCTCTGAATTGCATATACATGCCCCTG
1 TTTGTACTTCGGTACCTCTGAATTGCACATACATGCCACTG
* *
70670993 TTTGTACTTCGGTACCCCTAAATTGCACATACATGCCACTG
1 TTTGTACTTCGGTACCTCTGAATTGCACATACATGCCACTG
* *
70671034 TTTATACTTCGGTA-CTCCTGAACTGCACATACTAT--CACTG
1 TTTGTACTTCGGTACCT-CTGAATTGCACATAC-ATGCCACTG
70671074 TTTGTACTTCGGTA
1 TTTGTACTTCGGTA
70671088 TCCCTAAGTA
Statistics
Matches: 83, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
40 19 0.23
41 62 0.75
42 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.15, T:0.36
Consensus pattern (41 bp):
TTTGTACTTCGGTACCTCTGAATTGCACATACATGCCACTG
Found at i:70671870 original size:26 final size:26
Alignment explanation
Indices: 70671841--70671916 Score: 73
Period size: 26 Copynumber: 2.9 Consensus size: 26
70671831 CATAGCTCAA
70671841 GTGAGCAAG-CCCATTTCACAGCTCGT
1 GTGAG-AAGACCCATTTCACAGCTCGT
* * * *
70671867 GTGAGTAGTCCCATTTCACAACTTGT
1 GTGAGAAGACCCATTTCACAGCTCGT
* * *
70671893 GTAAGTAGACCCATTTCATAGCTC
1 GTGAGAAGACCCATTTCACAGCTC
70671917 ATATGAGCAA
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
25 2 0.05
26 39 0.95
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.29
Consensus pattern (26 bp):
GTGAGAAGACCCATTTCACAGCTCGT
Found at i:70673983 original size:47 final size:47
Alignment explanation
Indices: 70673925--70674067 Score: 241
Period size: 47 Copynumber: 3.0 Consensus size: 47
70673915 GTTGAATTTA
* *
70673925 AAGCTTGTTAAATTTGCTCTTAATATTCCCGGATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCCCTTAATATTTCCGGATAAGTTACTTAGTT
*
70673972 AAGCCTGTTAAATTTGCCCTTAATATTTCCGGATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCCCTTAATATTTCCGGATAAGTTACTTAGTT
* *
70674019 AAGCTTGTTAAATTTGCCCTTAATATTTCCAGATAAGTTACTTATTT
1 AAGCTTGTTAAATTTGCCCTTAATATTTCCGGATAAGTTACTTAGTT
70674066 AA
1 AA
70674068 AGAAAATTTT
Statistics
Matches: 90, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 90 1.00
ACGTcount: A:0.29, C:0.15, G:0.13, T:0.42
Consensus pattern (47 bp):
AAGCTTGTTAAATTTGCCCTTAATATTTCCGGATAAGTTACTTAGTT
Found at i:70674938 original size:45 final size:44
Alignment explanation
Indices: 70674874--70675046 Score: 199
Period size: 45 Copynumber: 3.9 Consensus size: 44
70674864 CGCACAGTAT
* *
70674874 TATTCAGGCCTTTGAGCCTAGCAGACTATAATGCCGGTGATATAC
1 TATTCAGG-CTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATAC
* * *
70674919 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGTCGGTGAGATAC
1 TATTCAGG-CTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATAC
** *
70674964 TATTTGGGCTTTCGAGCCTAGCAGGCTATAATGCCAGTGAAATGA-
1 TATTCAGGCTTT-GAGCCTAGCAGGCTATAATGCCGGTGAAAT-AC
* *
70675009 TA-TCAGGCTTCGAGCCTAGCAGGCGA-AATGCCGGTGAA
1 TATTCAGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAA
70675047 CGAATTCAGG
Statistics
Matches: 113, Mismatches: 13, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
42 11 0.10
43 14 0.12
44 10 0.09
45 77 0.68
46 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (44 bp):
TATTCAGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATAC
Found at i:70675482 original size:19 final size:21
Alignment explanation
Indices: 70675453--70675504 Score: 65
Period size: 22 Copynumber: 2.6 Consensus size: 21
70675443 TTGCATTACT
70675453 TAAAA-CTTACTA-T-GCTTA
1 TAAAAGCTTACTATTAGCTTA
70675471 TAAAAGCTTACTATTAAGCTTA
1 TAAAAGCTTACTATT-AGCTTA
*
70675493 TGAAAGCTTACT
1 TAAAAGCTTACT
70675505 CCATTTGTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
18 5 0.17
19 7 0.24
20 1 0.03
22 16 0.55
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.37
Consensus pattern (21 bp):
TAAAAGCTTACTATTAGCTTA
Found at i:70680812 original size:40 final size:40
Alignment explanation
Indices: 70680728--70680911 Score: 187
Period size: 40 Copynumber: 4.6 Consensus size: 40
70680718 TTGAATGCTG
* * * *
70680728 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
70680767 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * **
70680808 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACCAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
70680848 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
70680888 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
70680912 GAATGAGTTA
Statistics
Matches: 121, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
39 1 0.01
40 110 0.91
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:70688289 original size:26 final size:26
Alignment explanation
Indices: 70688260--70688335 Score: 73
Period size: 26 Copynumber: 2.9 Consensus size: 26
70688250 CATAGCTCAA
70688260 GTGAGCAAG-CCCATTTCACAGCTCGT
1 GTGAG-AAGACCCATTTCACAGCTCGT
* * * *
70688286 GTGAGTAGTCCCATTTCACAACTTGT
1 GTGAGAAGACCCATTTCACAGCTCGT
* * *
70688312 GTAAGTAGACCCATTTCATAGCTC
1 GTGAGAAGACCCATTTCACAGCTC
70688336 ATATGAGCAA
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
25 2 0.05
26 39 0.95
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.29
Consensus pattern (26 bp):
GTGAGAAGACCCATTTCACAGCTCGT
Found at i:70690396 original size:47 final size:47
Alignment explanation
Indices: 70690338--70690480 Score: 241
Period size: 47 Copynumber: 3.0 Consensus size: 47
70690328 GTTGAATTTA
* *
70690338 AAGCTTGTTAAATTTGCTCTTAATATTCCCGGATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCCCTTAATATTTCCGGATAAGTTACTTAGTT
*
70690385 AAGCCTGTTAAATTTGCCCTTAATATTTCCGGATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCCCTTAATATTTCCGGATAAGTTACTTAGTT
* *
70690432 AAGCTTGTTAAATTTGCCCTTAATATTTCCAGATAAGTTACTTATTT
1 AAGCTTGTTAAATTTGCCCTTAATATTTCCGGATAAGTTACTTAGTT
70690479 AA
1 AA
70690481 AGAAAATTTT
Statistics
Matches: 90, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 90 1.00
ACGTcount: A:0.29, C:0.15, G:0.13, T:0.42
Consensus pattern (47 bp):
AAGCTTGTTAAATTTGCCCTTAATATTTCCGGATAAGTTACTTAGTT
Found at i:70691350 original size:45 final size:44
Alignment explanation
Indices: 70691286--70691458 Score: 199
Period size: 45 Copynumber: 3.9 Consensus size: 44
70691276 CGCACAGTAT
* *
70691286 TATTCAGGCCTTTGAGCCTAGCAGACTATAATGCCGGTGATATAC
1 TATTCAGG-CTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATAC
* * *
70691331 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGTCGGTGAGATAC
1 TATTCAGG-CTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATAC
** *
70691376 TATTTGGGCTTTCGAGCCTAGCAGGCTATAATGCCAGTGAAATGA-
1 TATTCAGGCTTT-GAGCCTAGCAGGCTATAATGCCGGTGAAAT-AC
* *
70691421 TA-TCAGGCTTCGAGCCTAGCAGGCGA-AATGCCGGTGAA
1 TATTCAGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAA
70691459 CGAATTCAGG
Statistics
Matches: 113, Mismatches: 13, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
42 11 0.10
43 14 0.12
44 10 0.09
45 77 0.68
46 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (44 bp):
TATTCAGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATAC
Found at i:70691894 original size:19 final size:21
Alignment explanation
Indices: 70691865--70691916 Score: 65
Period size: 22 Copynumber: 2.6 Consensus size: 21
70691855 TTGCATTACT
70691865 TAAAA-CTTACTA-T-GCTTA
1 TAAAAGCTTACTATTAGCTTA
70691883 TAAAAGCTTACTATTAAGCTTA
1 TAAAAGCTTACTATT-AGCTTA
*
70691905 TGAAAGCTTACT
1 TAAAAGCTTACT
70691917 CCATTTGTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
18 5 0.17
19 7 0.24
20 1 0.03
22 16 0.55
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.37
Consensus pattern (21 bp):
TAAAAGCTTACTATTAGCTTA
Found at i:70697222 original size:40 final size:40
Alignment explanation
Indices: 70697138--70697320 Score: 187
Period size: 40 Copynumber: 4.6 Consensus size: 40
70697128 TTGAATGCTG
* * * *
70697138 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
70697177 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
70697218 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATA-CAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
70697257 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
70697297 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
70697321 GAATGAGTTA
Statistics
Matches: 121, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 35 0.29
40 76 0.63
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:70697289 original size:79 final size:81
Alignment explanation
Indices: 70697138--70697317 Score: 219
Period size: 79 Copynumber: 2.3 Consensus size: 81
70697128 TTGAATGCTG
* * * *
70697138 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGTATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
* *
70697202 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
70697218 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACAAT-TCCGGGTTAAG-TCCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACAATATCCGGACTAAGAT-CCGAAGGCA
70697279 TTCGTGCGAGTTTTAAAA
64 TTCGTGCGAGTTTTAAAA
70697297 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
70697318 ATTGAATGAG
Statistics
Matches: 88, Mismatches: 8, Indels: 9
0.84 0.08 0.09
Matches are distributed among these distances:
78 3 0.03
79 51 0.58
80 25 0.28
81 9 0.10
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:70697341 original size:39 final size:39
Alignment explanation
Indices: 70697218--70697367 Score: 117
Period size: 39 Copynumber: 3.8 Consensus size: 39
70697208 AGTTATTAAT
* ** * *
70697218 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAG--ATACAAT
1 TCCGGGTTAAGTCCCGAAGG-CATTGAACGAGTTCTA-AAA
** *
70697257 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTTTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GAACGAGTTCTAAAA
* **
70697297 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATGA
1 TCCGGGTTAAGTCCCGAAGGCATTGAACGAGTT-CTAAAA
* *
70697337 -CCGGGCTATGTCCCGAAGGCACTTGAACGAG
1 TCCGGGTTAAGTCCCGAAGGCA-TTGAACGAG
70697368 GAGCTATATC
Statistics
Matches: 94, Mismatches: 12, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
38 3 0.03
39 52 0.55
40 37 0.39
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.25
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGAACGAGTTCTAAAA
Found at i:70697341 original size:79 final size:79
Alignment explanation
Indices: 70697191--70697357 Score: 194
Period size: 79 Copynumber: 2.1 Consensus size: 79
70697181 GGACTAAGAT
* * * * **
70697191 CCGAAGGTATTTGTGCGAGTTATTAATTCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACAA
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCCATTGAACGAGATACAA
* *
70697256 TTCCGGGTTAAGTC
66 TACCGGGCTAAGTC
* * *
70697270 CCGAAGGCATTCGTGCGAGTT-TTAAAATCCGGGTTAAGTCCCGAAGG-CATTGAATGAGTTACT
1 CCGAAGGCATTCGTGCGAGTTATT-AAATCCGGGTTAAGTCCCGAAGGCCATTGAACGAGATACA
*
70697333 ATGACCGGGCTATGTC
65 AT-ACCGGGCTAAGTC
70697349 CCGAAGGCA
1 CCGAAGGCA
70697358 CTTGAACGAG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
78 14 0.19
79 60 0.81
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCCATTGAACGAGATACAA
TACCGGGCTAAGTC
Found at i:70704176 original size:40 final size:40
Alignment explanation
Indices: 70704092--70704274 Score: 187
Period size: 40 Copynumber: 4.6 Consensus size: 40
70704082 TTGAATGCTG
* * * *
70704092 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
70704131 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
70704172 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATA-CAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
70704211 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
70704251 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
70704275 GAATGAGTTA
Statistics
Matches: 121, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 35 0.29
40 76 0.63
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:70704243 original size:79 final size:81
Alignment explanation
Indices: 70704092--70704271 Score: 219
Period size: 79 Copynumber: 2.3 Consensus size: 81
70704082 TTGAATGCTG
* * * *
70704092 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGTATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
* *
70704156 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
70704172 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACAAT-TCCGGGTTAAG-TCCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACAATATCCGGACTAAGAT-CCGAAGGCA
70704233 TTCGTGCGAGTTTTAAAA
64 TTCGTGCGAGTTTTAAAA
70704251 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
70704272 ATTGAATGAG
Statistics
Matches: 88, Mismatches: 8, Indels: 9
0.84 0.08 0.09
Matches are distributed among these distances:
78 3 0.03
79 51 0.58
80 25 0.28
81 9 0.10
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:70704295 original size:39 final size:39
Alignment explanation
Indices: 70704172--70704321 Score: 117
Period size: 39 Copynumber: 3.8 Consensus size: 39
70704162 AGTTATTAAT
* ** * *
70704172 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAG--ATACAAT
1 TCCGGGTTAAGTCCCGAAGG-CATTGAACGAGTTCTA-AAA
** *
70704211 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTTTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GAACGAGTTCTAAAA
* **
70704251 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATGA
1 TCCGGGTTAAGTCCCGAAGGCATTGAACGAGTT-CTAAAA
* *
70704291 -CCGGGCTATGTCCCGAAGGCACTTGAACGAG
1 TCCGGGTTAAGTCCCGAAGGCA-TTGAACGAG
70704322 GAGCTATATC
Statistics
Matches: 94, Mismatches: 12, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
38 3 0.03
39 52 0.55
40 37 0.39
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.25
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGAACGAGTTCTAAAA
Done.