Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 206 of 295
Found at i:70704295 original size:79 final size:79
Alignment explanation
Indices: 70704145--70704311 Score: 194
Period size: 79 Copynumber: 2.1 Consensus size: 79
70704135 GGACTAAGAT
* * * * **
70704145 CCGAAGGTATTTGTGCGAGTTATTAATTCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACAA
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCCATTGAACGAGATACAA
* *
70704210 TTCCGGGTTAAGTC
66 TACCGGGCTAAGTC
* * *
70704224 CCGAAGGCATTCGTGCGAGTT-TTAAAATCCGGGTTAAGTCCCGAAGG-CATTGAATGAGTTACT
1 CCGAAGGCATTCGTGCGAGTTATT-AAATCCGGGTTAAGTCCCGAAGGCCATTGAACGAGATACA
*
70704287 ATGACCGGGCTATGTC
65 AT-ACCGGGCTAAGTC
70704303 CCGAAGGCA
1 CCGAAGGCA
70704312 CTTGAACGAG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
78 14 0.19
79 60 0.81
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCCATTGAACGAGATACAA
TACCGGGCTAAGTC
Found at i:70708909 original size:45 final size:44
Alignment explanation
Indices: 70708845--70709016 Score: 215
Period size: 45 Copynumber: 3.9 Consensus size: 44
70708835 CGCATAGTAT
*
70708845 TATTCGGGCCTTTGAGCCTAGTAGGCTATAATGCCGGTGAGATAC
1 TATTCGGG-CTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
*
70708890 TATTCGGGCCTTTGAGCCTAGTAGGCTATAATGCCGGTGAGATAC
1 TATTCGGG-CTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
* * *
70708935 CATTCGGGCTTTCGAGCCTAGCAGGATATAATGCCGGTGAAATGA-
1 TATTCGGGCTTT-GAGCCTAGCAGGCTATAATGCCGGTGAGAT-AC
* * *
70708980 TA-TCAGGCTTCGAGCCTAGCAGGCGA-AATGCCGGTGA
1 TATTCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
70709017 ATGAATTCAG
Statistics
Matches: 116, Mismatches: 9, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
42 11 0.09
43 13 0.11
44 11 0.09
45 80 0.69
46 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.26
Consensus pattern (44 bp):
TATTCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
Found at i:70709453 original size:19 final size:19
Alignment explanation
Indices: 70709429--70709475 Score: 67
Period size: 22 Copynumber: 2.3 Consensus size: 19
70709419 TTGCTTAAAA
70709429 CTTACTAAGCTTATGAAAG
1 CTTACTAAGCTTATGAAAG
70709448 CTTACTATTAAGCTTATGAAAG
1 CTTAC---TAAGCTTATGAAAG
70709470 CTTACT
1 CTTACT
70709476 CCGTTTGTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
19 6 0.24
22 19 0.76
ACGTcount: A:0.34, C:0.17, G:0.13, T:0.36
Consensus pattern (19 bp):
CTTACTAAGCTTATGAAAG
Found at i:70709462 original size:22 final size:22
Alignment explanation
Indices: 70709434--70709475 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
70709424 TAAAACTTAC
70709434 TAAGCTTATGAAAGCTTACTAT
1 TAAGCTTATGAAAGCTTACTAT
70709456 TAAGCTTATGAAAGCTTACT
1 TAAGCTTATGAAAGCTTACT
70709476 CCGTTTGTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (22 bp):
TAAGCTTATGAAAGCTTACTAT
Found at i:70710211 original size:10 final size:10
Alignment explanation
Indices: 70710175--70710211 Score: 56
Period size: 10 Copynumber: 3.7 Consensus size: 10
70710165 AGCCATGTGA
*
70710175 TTTGGCTTAT
1 TTTGGTTTAT
*
70710185 TTTGGTATAT
1 TTTGGTTTAT
70710195 TTTGGTTTAT
1 TTTGGTTTAT
70710205 TTTGGTT
1 TTTGGTT
70710212 AAGTATATAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.11, C:0.03, G:0.22, T:0.65
Consensus pattern (10 bp):
TTTGGTTTAT
Found at i:70717329 original size:27 final size:27
Alignment explanation
Indices: 70717225--70717339 Score: 153
Period size: 27 Copynumber: 4.3 Consensus size: 27
70717215 AGGGCATTTC
70717225 AGTCATTTTACCACATAAGGGC--AAT
1 AGTCATTTTACCACATAAGGGCAAAAT
*
70717250 AGTCATTTTACCACATAAAGGCAAAAT
1 AGTCATTTTACCACATAAGGGCAAAAT
* * *
70717277 AGTCATGTTACCACATAAGAGTAAAAT
1 AGTCATTTTACCACATAAGGGCAAAAT
* * *
70717304 AGTCATTTCACCACATACGGGCAAAAC
1 AGTCATTTTACCACATAAGGGCAAAAT
70717331 AGTCATTTT
1 AGTCATTTT
70717340 GTTCAATCAG
Statistics
Matches: 76, Mismatches: 12, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
25 21 0.28
27 55 0.72
ACGTcount: A:0.39, C:0.20, G:0.14, T:0.27
Consensus pattern (27 bp):
AGTCATTTTACCACATAAGGGCAAAAT
Found at i:70718780 original size:12 final size:12
Alignment explanation
Indices: 70718763--70718802 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
70718753 CCCTTGATTT
70718763 TCTCCTAAAATC
1 TCTCCTAAAATC
70718775 TCTCCTAAAATC
1 TCTCCTAAAATC
* **
70718787 ACTCCTCCAATC
1 TCTCCTAAAATC
70718799 TCTC
1 TCTC
70718803 AACCATCCAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.28, C:0.40, G:0.00, T:0.33
Consensus pattern (12 bp):
TCTCCTAAAATC
Found at i:70721108 original size:27 final size:27
Alignment explanation
Indices: 70720972--70721101 Score: 181
Period size: 27 Copynumber: 4.9 Consensus size: 27
70720962 AAAGGCATTT
* *
70720972 CAGTCATTTTACCACATAATGGTAAAA
1 CAGTCATTTTACCACATAAGGGCAAAA
* *
70720999 CAGTCATTTTACCATAAAAGGGCAAAA
1 CAGTCATTTTACCACATAAGGGCAAAA
* *
70721026 CAATCATTTTACCACATAAGGGCGAAA
1 CAGTCATTTTACCACATAAGGGCAAAA
* *
70721053 CAGTCATGTTGCCACATAAGGGCAAAA
1 CAGTCATTTTACCACATAAGGGCAAAA
70721080 CAGT-ATTTTACCACATAAGGGC
1 CAGTCATTTTACCACATAAGGGC
70721102 TGTAACACCC
Statistics
Matches: 89, Mismatches: 14, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
26 16 0.18
27 73 0.82
ACGTcount: A:0.39, C:0.21, G:0.16, T:0.24
Consensus pattern (27 bp):
CAGTCATTTTACCACATAAGGGCAAAA
Found at i:70722373 original size:29 final size:29
Alignment explanation
Indices: 70722298--70722417 Score: 170
Period size: 29 Copynumber: 4.2 Consensus size: 29
70722288 CATATACCTA
** *
70722298 TATATGGCCCACTAGGCCCAAAT-ATATT
1 TATATGGCCCTTTAGGCCCAAATCACATT
* * *
70722326 CACATGGCCCCTTAGGCCCAAATCACATT
1 TATATGGCCCTTTAGGCCCAAATCACATT
*
70722355 TATATGGCCCTTTAAGCCCAAATCACATT
1 TATATGGCCCTTTAGGCCCAAATCACATT
70722384 TATATGGCCCTTTAGGCCCAAATCACATT
1 TATATGGCCCTTTAGGCCCAAATCACATT
70722413 TATAT
1 TATAT
70722418 TCATGCTCAC
Statistics
Matches: 81, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
28 19 0.23
29 62 0.77
ACGTcount: A:0.30, C:0.28, G:0.12, T:0.29
Consensus pattern (29 bp):
TATATGGCCCTTTAGGCCCAAATCACATT
Found at i:70730258 original size:13 final size:13
Alignment explanation
Indices: 70730240--70730266 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
70730230 ATATGTGACA
70730240 TGTGTGAAAATTT
1 TGTGTGAAAATTT
70730253 TGTGTGAAAATTT
1 TGTGTGAAAATTT
70730266 T
1 T
70730267 ATCGTTTGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.22, T:0.48
Consensus pattern (13 bp):
TGTGTGAAAATTT
Found at i:70731513 original size:43 final size:43
Alignment explanation
Indices: 70731358--70731514 Score: 124
Period size: 43 Copynumber: 3.7 Consensus size: 43
70731348 TGTGATATCT
* *
70731358 TGTAAGACCACGTCTGGGACGTTGGCATTGACT-TGA-GATTTACA
1 TGTAAGACCACGTCTGGGACATTGGCATCGA-TAT-ATGA-TTACA
* * * * * * * *
70731402 TGTAATACCATGACTAGGACATCGGCATCG-TACATAATTTCA
1 TGTAAGACCACGTCTGGGACATTGGCATCGATATATGATTACA
* * * *
70731444 TGTAAGACC-CTGTCTCGGATAGTGGCATCGATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGACATTGGCATCGATATATGATTACA
70731487 TGTAAGACCACGTCTGGGACATTGGCAT
1 TGTAAGACCACGTCTGGGACATTGGCAT
70731515 TGTACCAACT
Statistics
Matches: 84, Mismatches: 24, Indels: 11
0.71 0.20 0.09
Matches are distributed among these distances:
42 28 0.33
43 32 0.38
44 24 0.29
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACATTGGCATCGATATATGATTACA
Found at i:70732477 original size:8 final size:8
Alignment explanation
Indices: 70732459--70732488 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
70732449 AAGCAAATTA
70732459 TGTGTATTT
1 TGTG-ATTT
70732468 TGTGATTT
1 TGTGATTT
70732476 TGTGATTT
1 TGTGATTT
70732484 TGTGA
1 TGTGA
70732489 ATTAGGGACT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 17 0.81
9 4 0.19
ACGTcount: A:0.13, C:0.00, G:0.27, T:0.60
Consensus pattern (8 bp):
TGTGATTT
Found at i:70737457 original size:56 final size:56
Alignment explanation
Indices: 70737371--70737482 Score: 224
Period size: 56 Copynumber: 2.0 Consensus size: 56
70737361 CACATGGGCG
70737371 TGTGACTTTAACAGTTTTGAAAGATTTGGTTAAGTTCTAAAAATTCTGAATGTGTT
1 TGTGACTTTAACAGTTTTGAAAGATTTGGTTAAGTTCTAAAAATTCTGAATGTGTT
70737427 TGTGACTTTAACAGTTTTGAAAGATTTGGTTAAGTTCTAAAAATTCTGAATGTGTT
1 TGTGACTTTAACAGTTTTGAAAGATTTGGTTAAGTTCTAAAAATTCTGAATGTGTT
70737483 CGTTTTAGTC
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.30, C:0.07, G:0.20, T:0.43
Consensus pattern (56 bp):
TGTGACTTTAACAGTTTTGAAAGATTTGGTTAAGTTCTAAAAATTCTGAATGTGTT
Found at i:70752949 original size:27 final size:28
Alignment explanation
Indices: 70752883--70752952 Score: 90
Period size: 28 Copynumber: 2.5 Consensus size: 28
70752873 AAGCGTTTTG
* *
70752883 GTGGCTATGCCACAAACATCTGTTTCTA
1 GTGGCTACGCCACAAACATATGTTTCTA
*
70752911 GTGGCTACGCCACAAATATATG-TTCTA
1 GTGGCTACGCCACAAACATATGTTTCTA
70752938 GTGGCT-CGGCCACAA
1 GTGGCTAC-GCCACAA
70752953 TATCTGCATC
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
26 1 0.03
27 18 0.47
28 19 0.50
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (28 bp):
GTGGCTACGCCACAAACATATGTTTCTA
Found at i:70760040 original size:40 final size:40
Alignment explanation
Indices: 70759946--70760090 Score: 166
Period size: 40 Copynumber: 3.6 Consensus size: 40
70759936 TACTCGAATG
*
70759946 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
70759987 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * ** *
70760027 ATATACGGGCTAAGTCCCGAAGGCATTTATGCTAGTAACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* * *
70760067 ATATCCGGGTTAAGACCTGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
70760091 CTTGTGCGAG
Statistics
Matches: 88, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
39 1 0.01
40 58 0.66
41 28 0.32
42 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:70764461 original size:39 final size:38
Alignment explanation
Indices: 70764418--70764620 Score: 245
Period size: 39 Copynumber: 5.3 Consensus size: 38
70764408 TCCTCGTTCA
* *
70764418 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGTT-TAGTAACTCGCAC
*
70764457 AATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCAC
1 AATGCCTTCGGGACTTAACCC-GGTTTAGTAACTCGCAC
*
70764496 AAATGCCTTCGGGACTTAACCCGGATTTAG----TCACAC
1 -AATGCCTTCGGGACTTAACCCGG-TTTAGTAACTCGCAC
70764532 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGG-TTTAGTAACTCGCAC
* * *
70764571 AATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCAC
1 AATGCCTTCGGGACTTAACCCGG-TTTAGTAACTCGCAC
70764609 AAATGCCTTCGG
1 -AATGCCTTCGG
70764621 ATCTTAGTCG
Statistics
Matches: 147, Mismatches: 9, Indels: 16
0.85 0.05 0.09
Matches are distributed among these distances:
35 29 0.20
36 5 0.03
38 23 0.16
39 61 0.41
40 29 0.20
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (38 bp):
AATGCCTTCGGGACTTAACCCGGTTTAGTAACTCGCAC
Found at i:70764549 original size:75 final size:73
Alignment explanation
Indices: 70764454--70764599 Score: 247
Period size: 75 Copynumber: 2.0 Consensus size: 73
70764444 TAGTAACTCG
70764454 CACAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CACAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCAC-AATGCCTTCGGG-CTTAACCCG
*
70764519 GATTTAGTCA
64 GAATTAGTCA
* *
70764529 CACAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAATGCCTTCGGGCTTAGCCCGGA
1 CACAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCACAATGCCTTCGGGCTTAACCCGGA
70764594 ATTAGT
66 ATTAGT
70764600 ATCTCGCACA
Statistics
Matches: 68, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
73 15 0.22
74 12 0.18
75 41 0.60
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (73 bp):
CACAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCACAATGCCTTCGGGCTTAACCCGGA
ATTAGTCA
Found at i:70772438 original size:40 final size:40
Alignment explanation
Indices: 70772394--70772657 Score: 349
Period size: 40 Copynumber: 6.7 Consensus size: 40
70772384 GCTCCTCGTT
*
70772394 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
70772434 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
70772474 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
70772514 CCAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
70772554 CCAATGCCTTC-GG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
70772592 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
70772633 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
70772658 CATCATTCAA
Statistics
Matches: 204, Mismatches: 15, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
38 34 0.17
39 2 0.01
40 155 0.76
41 13 0.06
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:70772642 original size:118 final size:121
Alignment explanation
Indices: 70772394--70772657 Score: 342
Period size: 118 Copynumber: 2.2 Consensus size: 121
70772384 GCTCCTCGTT
*
70772394 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* * *
70772458 GATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
65 GAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTAGCAC
* * * *
70772515 CAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACCAATGCCTTC-GG-CTTAGCCCGG
1 CAAAGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* ** * *
70772577 AATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA-
66 AATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAGTAAC-TAGCAC
70772633 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
70772658 CATCATTCAA
Statistics
Matches: 125, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
117 3 0.02
118 71 0.57
119 6 0.05
120 40 0.32
121 5 0.04
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (121 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
AATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTAGCAC
Found at i:70775538 original size:28 final size:27
Alignment explanation
Indices: 70775493--70775559 Score: 89
Period size: 28 Copynumber: 2.4 Consensus size: 27
70775483 TGGAAGAAGC
*
70775493 GTTCTAGTGGCTATGCCACAAACATCT
1 GTTCTAGTGGCTACGCCACAAACATCT
* * *
70775520 GTTTCTGGTGGCTACGCCATAAATATCT
1 G-TTCTAGTGGCTACGCCACAAACATCT
70775548 GTTCTAGTGGCT
1 GTTCTAGTGGCT
70775560 CTACCACAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
27 11 0.32
28 23 0.68
ACGTcount: A:0.21, C:0.22, G:0.22, T:0.34
Consensus pattern (27 bp):
GTTCTAGTGGCTACGCCACAAACATCT
Found at i:70775594 original size:27 final size:26
Alignment explanation
Indices: 70775541--70775598 Score: 71
Period size: 27 Copynumber: 2.2 Consensus size: 26
70775531 CTACGCCATA
* *
70775541 AATATCTGTTCTAGTGGCTCTACCAC
1 AATATCTATTCTAGTGACTCTACCAC
* *
70775567 AATATCTATATCTGGTGACTCTATCAC
1 AATATCTAT-TCTAGTGACTCTACCAC
70775594 AATAT
1 AATAT
70775599 TTGTTCTGGC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
26 8 0.30
27 19 0.70
ACGTcount: A:0.29, C:0.22, G:0.12, T:0.36
Consensus pattern (26 bp):
AATATCTATTCTAGTGACTCTACCAC
Found at i:70777794 original size:39 final size:39
Alignment explanation
Indices: 70777738--70777851 Score: 156
Period size: 39 Copynumber: 2.9 Consensus size: 39
70777728 CAGTGATGTT
* *
70777738 TATCCCGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* *
70777777 TATCCGGACTTAAGGTCCACAAGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* * * *
70777816 TAACCGGACTTAAGGTCTGCAGGCTACGTGATGGAA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAA
70777852 ATATGTCTGG
Statistics
Matches: 65, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 65 1.00
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (39 bp):
TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
Found at i:70781211 original size:24 final size:24
Alignment explanation
Indices: 70781179--70781229 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
70781169 GCTTCGGTTT
70781179 TTGATAATTTCTACGTTTTTGTAA
1 TTGATAATTTCTACGTTTTTGTAA
70781203 TTGATAATTTCTACGTTTTTGTAA
1 TTGATAATTTCTACGTTTTTGTAA
70781227 TTG
1 TTG
70781230 TTGCTTCGTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.24, C:0.08, G:0.14, T:0.55
Consensus pattern (24 bp):
TTGATAATTTCTACGTTTTTGTAA
Found at i:70784543 original size:46 final size:46
Alignment explanation
Indices: 70784493--70784663 Score: 197
Period size: 46 Copynumber: 3.7 Consensus size: 46
70784483 GTTGAGCATT
70784493 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
* * * *
70784539 CGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TC
* * *
70784586 CGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACGCC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
*
70784632 CGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
70784664 GGGGCGGGTT
Statistics
Matches: 103, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 58 0.56
47 28 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
Found at i:70784652 original size:93 final size:93
Alignment explanation
Indices: 70784488--70784658 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
70784478 GGATGGTTGA
* * *
70784488 GCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
70784553 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
70784581 GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
70784646 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
70784659 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:70789837 original size:40 final size:40
Alignment explanation
Indices: 70789805--70790106 Score: 469
Period size: 40 Copynumber: 7.5 Consensus size: 40
70789795 CCAGCATGAT
* * * *
70789805 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** * *
70789845 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
70789885 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
70789925 TGCTCTTCGGGACTTAACCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
70789965 TGCTCTTCGGGACTTAGCCCGGTTACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
70790005 TGCTCTTCGGGACTTAGCCCGGATACATAACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
70790045 TGCTCTTCGGGACTCAACCCGGATACATCACTAGCTCGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
70790085 TGCTCTTCGGGACTTAGCCCGG
1 TGCTCTTCGGGACTTAGCCCGG
70790107 CTATACAACT
Statistics
Matches: 239, Mismatches: 23, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 239 1.00
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:70790659 original size:52 final size:52
Alignment explanation
Indices: 70790574--70790677 Score: 154
Period size: 52 Copynumber: 2.0 Consensus size: 52
70790564 CCAATAAAAT
* * *
70790574 TGTAACACCCCGTACCCGAGATCGTTGCCGGAGTCAAACACGAGGTGCTAAC
1 TGTAACACCCCGAACCCGAGACCGTCGCCGGAGTCAAACACGAGGTGCTAAC
* * *
70790626 TGTAACACCCCGAACCCGAGACCGTCGCTGGAGTCGAACACGAGGTGTTAAC
1 TGTAACACCCCGAACCCGAGACCGTCGCCGGAGTCAAACACGAGGTGCTAAC
70790678 AGACTTCAAA
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
52 46 1.00
ACGTcount: A:0.27, C:0.31, G:0.26, T:0.16
Consensus pattern (52 bp):
TGTAACACCCCGAACCCGAGACCGTCGCCGGAGTCAAACACGAGGTGCTAAC
Found at i:70793557 original size:40 final size:40
Alignment explanation
Indices: 70793500--70793735 Score: 208
Period size: 40 Copynumber: 5.9 Consensus size: 40
70793490 CGAATACACG
* * *
70793500 TCACTAGCATGATTGCTCTTCGGGACCTAGCCCGGATAAA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAAA
* * ** * *
70793540 ACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATATA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAAA
* * *
70793580 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAAA
* * *
70793620 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATTTAG
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGA-TAAA
* * * * ** **
70793661 TAACTCGCACCAATGC-CTTCGGGTCTTATTCCGGATATGG
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA-AA
*
70793701 TCACTTAGCAC-AAAGC-CTTCGGGACTTAGCCCGGA
1 TCAC-TAGCACGAATGCTCTTCGGGACTTAGCCCGGA
70793736 CATCATTCGA
Statistics
Matches: 155, Mismatches: 38, Indels: 6
0.78 0.19 0.03
Matches are distributed among these distances:
39 1 0.01
40 136 0.88
41 18 0.12
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAAA
Found at i:70793721 original size:120 final size:120
Alignment explanation
Indices: 70793500--70793735 Score: 270
Period size: 120 Copynumber: 2.0 Consensus size: 120
70793490 CGAATACACG
* *
70793500 TCACTAGCATGATTGCTCTTCGGGACCTAGCCCGGATAAAACACCAGCACGAATGCTCTTCGGGG
1 TCACTAGCATGAATGCTCTTCGGGACCTAGCCCGGATAAAACACCAGCACCAATGCTCTTCGGGG
* *
70793565 TTTAGCACGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
66 TTTAGCACGGATATATCACTAGCACGAAAGCTCTTCGGAACTTAGCCCGGATACA
* * *
70793620 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATTTAGTAAC-TC-GCACCAATGC-CTTC-
1 TCACTAGCATGAATGCTCTTCGGGACCTAGCCCGGA--TA-AAACACCAGCACCAATGCTCTTCG
* * *
70793681 GGGTCTTATTC-CGGATATGGTCACTTAGCAC-AAAGC-CTTCGGGACTTAGCCCGGA
63 GGGT-TTA-GCACGGATAT-ATCAC-TAGCACGAAAGCTCTTCGGAACTTAGCCCGGA
70793736 CATCATTCGA
Statistics
Matches: 99, Mismatches: 10, Indels: 14
0.80 0.08 0.11
Matches are distributed among these distances:
119 4 0.04
120 65 0.66
121 18 0.18
122 9 0.09
123 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (120 bp):
TCACTAGCATGAATGCTCTTCGGGACCTAGCCCGGATAAAACACCAGCACCAATGCTCTTCGGGG
TTTAGCACGGATATATCACTAGCACGAAAGCTCTTCGGAACTTAGCCCGGATACA
Found at i:70794080 original size:29 final size:29
Alignment explanation
Indices: 70794041--70794117 Score: 93
Period size: 29 Copynumber: 2.6 Consensus size: 29
70794031 CTTAATAATC
* *
70794041 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCACGCA-TTTCA
*
70794071 AACTCGCACACTTAGTGCCACGCATTTCA
1 AACCCGCACACTTAGTGCCACGCATTTCA
*
70794100 AGCCCGCACACTTAGTGC
1 AACCCGCACACTTAGTGC
70794118 TGAAACCCAA
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
28 3 0.07
29 35 0.85
30 3 0.07
ACGTcount: A:0.27, C:0.34, G:0.16, T:0.23
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCACGCATTTCA
Found at i:70799752 original size:42 final size:43
Alignment explanation
Indices: 70799657--70799757 Score: 120
Period size: 43 Copynumber: 2.4 Consensus size: 43
70799647 CCAAAGTTCT
* *
70799657 AGATGTGGTCTTACATGTAATCAAATATCGATGCCACTATACC
1 AGATGTGGTCTTACACGAAATCAAATATCGATGCCACTATACC
*
70799700 AGACAG-GGTCTTACACGAAATCAAATA-CGATGCCAAC-AT-CAC
1 AGA-TGTGGTCTTACACGAAATCAAATATCGATGCC-ACTATAC-C
70799742 AGATGTGGTCTTACAC
1 AGATGTGGTCTTACAC
70799758 ATAAATCATA
Statistics
Matches: 50, Mismatches: 4, Indels: 9
0.79 0.06 0.14
Matches are distributed among these distances:
41 2 0.04
42 23 0.46
43 24 0.48
44 1 0.02
ACGTcount: A:0.35, C:0.23, G:0.18, T:0.25
Consensus pattern (43 bp):
AGATGTGGTCTTACACGAAATCAAATATCGATGCCACTATACC
Found at i:70808477 original size:47 final size:44
Alignment explanation
Indices: 70808372--70808544 Score: 154
Period size: 47 Copynumber: 3.8 Consensus size: 44
70808362 AGATTTTTTG
* *
70808372 TGTGCCAGTGTAAGACCAAGTCTAGGACATGGCATTGATG-T-AGAGAT
1 TGTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATTG--GCTAAGAG-T
* * * *
70808419 GAGTGCTAGTGTAAGACATGTTTGGGACATGCATTGGCCT-CGATGT
1 -TGTGCCAGTGTAAGACATGTCTGGGACATGCATTGG-CTAAGA-GT
* *
70808465 TGATAGCCAGTGTAAGACATGTCTGAGACATGCATCGGCTAAGAGT
1 TG-T-GCCAGTGTAAGACATGTCTGGGACATGCATTGGCTAAGAGT
*
70808511 TGTGCTAGTGTAAGACATGTCTGGGACATGCATT
1 TGTGCCAGTGTAAGACATGTCTGGGACATGCATT
70808545 AGCATGTATA
Statistics
Matches: 104, Mismatches: 15, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
44 29 0.28
45 2 0.02
46 17 0.16
47 43 0.41
48 13 0.12
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.28
Consensus pattern (44 bp):
TGTGCCAGTGTAAGACATGTCTGGGACATGCATTGGCTAAGAGT
Found at i:70808533 original size:44 final size:45
Alignment explanation
Indices: 70808421--70808543 Score: 160
Period size: 47 Copynumber: 2.7 Consensus size: 45
70808411 GTAGAGATGA
* * *
70808421 GTGCTAGTGTAAGACATGTTTGGGACATGCATTGGCCTCGATGTT
1 GTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTAGATGTT
* *
70808466 GATAGCCAGTGTAAGACATGTCTGAGACATGCATCGG-CTAAGA-GTT
1 G-T-GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCT-AGATGTT
70808512 GTGCTAGTGTAAGACATGTCTGGGACATGCAT
1 GTGCTAGTGTAAGACATGTCTGGGACATGCAT
70808544 TAGCATGTAT
Statistics
Matches: 68, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
44 28 0.41
45 2 0.03
46 7 0.10
47 31 0.46
ACGTcount: A:0.25, C:0.16, G:0.30, T:0.28
Consensus pattern (45 bp):
GTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTAGATGTT
Found at i:70816821 original size:29 final size:28
Alignment explanation
Indices: 70816788--70816855 Score: 68
Period size: 29 Copynumber: 2.4 Consensus size: 28
70816778 CTCTCATACA
* *
70816788 AGTCCACATATTTCAT-TATTTCACATTTT
1 AGTCCACA-ATTT-ATAAATTTCACAATTT
*
70816817 AGTCCCTCAATTTATAAATTTCACAATTT
1 AGT-CCACAATTTATAAATTTCACAATTT
70816846 AGTCCA-AATT
1 AGTCCACAATT
70816856 ACTCAAATTC
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
27 4 0.12
28 4 0.12
29 21 0.64
30 4 0.12
ACGTcount: A:0.32, C:0.21, G:0.04, T:0.43
Consensus pattern (28 bp):
AGTCCACAATTTATAAATTTCACAATTT
Found at i:70827102 original size:40 final size:40
Alignment explanation
Indices: 70827021--70827201 Score: 251
Period size: 40 Copynumber: 4.6 Consensus size: 40
70827011 AAACCAAGTA
** * *
70827021 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
*
70827060 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* *
70827100 CCTTCGGGACTTGGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* *
70827140 CCTTTGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
70827180 CCTTCGGG-CTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
70827202 CAATCCGAAT
Statistics
Matches: 128, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 26 0.20
40 102 0.80
ACGTcount: A:0.21, C:0.27, G:0.24, T:0.28
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:70829592 original size:6 final size:6
Alignment explanation
Indices: 70829562--70829692 Score: 81
Period size: 6 Copynumber: 21.3 Consensus size: 6
70829552 AAGAAACATT
* * * *
70829562 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATTAGA ATCAGGTT AT-AGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
* * * *
70829611 ATCAGA ATCAGA ATCAGA ATCAGA ATTAGA ATTAG- GTGACAGA ATTAGA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* *
70829660 ATTAGT ATCAGGTA A-CAGA ATCAGA ATCAGA AT
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
70829693 GTGAATGCAA
Statistics
Matches: 98, Mismatches: 16, Indels: 22
0.72 0.12 0.16
Matches are distributed among these distances:
5 6 0.06
6 80 0.82
7 8 0.08
8 4 0.04
ACGTcount: A:0.47, C:0.11, G:0.19, T:0.23
Consensus pattern (6 bp):
ATCAGA
Found at i:70829616 original size:25 final size:24
Alignment explanation
Indices: 70829583--70829692 Score: 97
Period size: 25 Copynumber: 4.7 Consensus size: 24
70829573 AATCAAAATG
*
70829583 AGAATCAGAATTAGAATCAGGTTAT
1 AGAATCAGAATTAGAATCAGG-TAC
*
70829608 AGAATCAGAATCAG-A--A--T-C
1 AGAATCAGAATTAGAATCAGGTAC
*
70829626 AGAATCAGAATTAGAATTAGGTGAC
1 AGAATCAGAATTAGAATCAGGT-AC
* *
70829651 AGAATTAGAATTAGTATCAGGTAAC
1 AGAATCAGAATTAGAATCAGGT-AC
*
70829676 AGAATCAGAATCAGAAT
1 AGAATCAGAATTAGAAT
70829693 GTGAATGCAA
Statistics
Matches: 68, Mismatches: 10, Indels: 14
0.74 0.11 0.15
Matches are distributed among these distances:
18 13 0.19
19 2 0.03
21 1 0.01
22 1 0.01
23 1 0.01
24 1 0.01
25 49 0.72
ACGTcount: A:0.46, C:0.10, G:0.20, T:0.24
Consensus pattern (24 bp):
AGAATCAGAATTAGAATCAGGTAC
Found at i:70829670 original size:43 final size:43
Alignment explanation
Indices: 70829571--70829689 Score: 132
Period size: 43 Copynumber: 2.7 Consensus size: 43
70829561 TATCAGAACT
* * * *
70829571 AGAATCAAAATGAGAATCAGAATTAGAATCAGGTTATAGAATC
1 AGAATCAGAATCAGAATCAGAATTAGAATCAGGTGACAGAATC
* *
70829614 AGAATCAGAATCAGAATCAGAATTAGAATTAGGTGACAGAATT
1 AGAATCAGAATCAGAATCAGAATTAGAATCAGGTGACAGAATC
* * *
70829657 AGAATTAGTATCAGGTAA-CAGAATCAGAATCAG
1 AGAATCAGAATCA-G-AATCAGAATTAGAATCAG
70829690 AATGTGAATG
Statistics
Matches: 64, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
43 48 0.75
44 14 0.22
45 2 0.03
ACGTcount: A:0.47, C:0.10, G:0.20, T:0.23
Consensus pattern (43 bp):
AGAATCAGAATCAGAATCAGAATTAGAATCAGGTGACAGAATC
Found at i:70830355 original size:27 final size:27
Alignment explanation
Indices: 70830308--70830475 Score: 194
Period size: 27 Copynumber: 6.2 Consensus size: 27
70830298 GGGCAAAATG
* * * *
70830308 GTAATTTTACCCCACAAGGGTATCTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
*
70830334 GATAATTCTACCCTATAGGGGTATTTCA
1 G-TAATTCTACCCTACAGGGGTATTTCA
* * **
70830362 GTATTTCTACCCTACAAGGGTATTTTG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
70830389 GTAATTCTGCCCTACAGAGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
70830416 GTAATTCTACCCTACTGAGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
70830443 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
70830470 ATAATT
1 GTAATT
70830476 TTGTAAATCG
Statistics
Matches: 119, Mismatches: 21, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
26 1 0.01
27 117 0.98
28 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.36
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:70830490 original size:27 final size:26
Alignment explanation
Indices: 70830460--70830563 Score: 82
Period size: 27 Copynumber: 3.8 Consensus size: 26
70830450 TACCCTACAG
*
70830460 GGGTATTTCAATAATTTTGTAAATCGA
1 GGGTATTT-AGTAATTTTGTAAATCGA
** * *
70830487 GGGTAAAATGGTAATTCTGTAAATCGA
1 GGGT-ATTTAGTAATTTTGTAAATCGA
* ** *
70830514 GGGTACTTTGGTAATTTTACAAGTCGA
1 GGGTA-TTTAGTAATTTTGTAAATCGA
*
70830541 GGGTATTTCAGTAATTTGGTAAA
1 GGGTATTT-AGTAATTTTGTAAA
70830564 CTAAAGATTC
Statistics
Matches: 58, Mismatches: 16, Indels: 6
0.73 0.20 0.08
Matches are distributed among these distances:
26 4 0.07
27 52 0.90
28 2 0.03
ACGTcount: A:0.32, C:0.08, G:0.24, T:0.37
Consensus pattern (26 bp):
GGGTATTTAGTAATTTTGTAAATCGA
Found at i:70833501 original size:34 final size:33
Alignment explanation
Indices: 70833463--70833532 Score: 113
Period size: 34 Copynumber: 2.1 Consensus size: 33
70833453 TTAGTGGCAA
*
70833463 TATCAGTGTGGGCCTTAGCCCAGTGCAGTAACAG
1 TATCAGTGTGGGCCTTAGCCCAATGCAGT-ACAG
*
70833497 TATCAGTGTGGGCCTTAGCCCAATTCAGTACAG
1 TATCAGTGTGGGCCTTAGCCCAATGCAGTACAG
70833530 TAT
1 TAT
70833533 TAGAGATGCA
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
33 7 0.21
34 27 0.79
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (33 bp):
TATCAGTGTGGGCCTTAGCCCAATGCAGTACAG
Found at i:70847227 original size:29 final size:28
Alignment explanation
Indices: 70847190--70847262 Score: 83
Period size: 29 Copynumber: 2.5 Consensus size: 28
70847180 ATTTATTTTA
70847190 TTTTCTTTTAATTTTAATTTTAATTTTCT
1 TTTTCTTTTAATTTT-ATTTTAATTTTCT
* *
70847219 TTTTCTTTTTATTTCTATTTTTATTTTCT
1 TTTTCTTTTAATTT-TATTTTAATTTTCT
* * *
70847248 GTTTATTTTATTTTT
1 TTTTCTTTTAATTTT
70847263 CTACACTTCT
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
28 1 0.03
29 35 0.95
30 1 0.03
ACGTcount: A:0.15, C:0.07, G:0.01, T:0.77
Consensus pattern (28 bp):
TTTTCTTTTAATTTTATTTTAATTTTCT
Found at i:70847239 original size:12 final size:11
Alignment explanation
Indices: 70847181--70847262 Score: 69
Period size: 11 Copynumber: 7.3 Consensus size: 11
70847171 ATTGAGTCCA
70847181 TTTATTTTATT
1 TTTATTTTATT
*
70847192 TTCT-TTTAATT
1 TT-TATTTTATT
*
70847203 TTAATTTTAATT
1 TTTATTTT-ATT
*
70847215 TTCT-TTTTCTT
1 TT-TATTTTATT
70847226 TTTATTTCTATT
1 TTTATTT-TATT
* *
70847238 TTTATTTTCTG
1 TTTATTTTATT
70847249 TTTATTTTATT
1 TTTATTTTATT
70847260 TTT
1 TTT
70847263 CTACACTTCT
Statistics
Matches: 55, Mismatches: 10, Indels: 12
0.71 0.13 0.16
Matches are distributed among these distances:
10 1 0.02
11 34 0.62
12 20 0.36
ACGTcount: A:0.16, C:0.06, G:0.01, T:0.77
Consensus pattern (11 bp):
TTTATTTTATT
Found at i:70847245 original size:6 final size:6
Alignment explanation
Indices: 70847195--70847262 Score: 50
Period size: 6 Copynumber: 11.7 Consensus size: 6
70847185 TTTTATTTTC
* * * * * *
70847195 TTTTAA TTTTAA TTTTAA TTTTCT TTTTCT TTTTAT TTCTAT TTTTA-
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
* *
70847242 TTTTCT GTTTA- TTTTAT TTTT
1 TTTTAT TTTTAT TTTTAT TTTT
70847263 CTACACTTCT
Statistics
Matches: 51, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
5 8 0.16
6 43 0.84
ACGTcount: A:0.16, C:0.06, G:0.01, T:0.76
Consensus pattern (6 bp):
TTTTAT
Found at i:70847262 original size:23 final size:21
Alignment explanation
Indices: 70847181--70847261 Score: 83
Period size: 23 Copynumber: 3.6 Consensus size: 21
70847171 ATTGAGTCCA
**
70847181 TTTATTTTATTTTCTTTTAAT
1 TTTATTTTATTTTCTTTTTCT
70847202 TTTAATTTTAATTTTCTTTTTCTT
1 TTT-ATTTT-ATTTTCTTTTTC-T
70847226 TTTATTTCTATTTT-TATTTTCT
1 TTTATTT-TATTTTCT-TTTTCT
70847248 GTTTATTTTATTTT
1 -TTTATTTTATTTT
70847262 TCTACACTTC
Statistics
Matches: 52, Mismatches: 2, Indels: 11
0.80 0.03 0.17
Matches are distributed among these distances:
21 3 0.06
22 13 0.25
23 31 0.60
24 5 0.10
ACGTcount: A:0.16, C:0.06, G:0.01, T:0.77
Consensus pattern (21 bp):
TTTATTTTATTTTCTTTTTCT
Found at i:70851099 original size:17 final size:17
Alignment explanation
Indices: 70851057--70851099 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
70851047 ATTAAGTACT
70851057 TACATAATTCAATTTAA
1 TACATAATTCAATTTAA
*
70851074 TCCATAATTCATATTT-A
1 TACATAATTCA-ATTTAA
*
70851091 TACAAAATT
1 TACATAATT
70851100 ACAAATTTGC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 18 0.82
18 4 0.18
ACGTcount: A:0.44, C:0.14, G:0.00, T:0.42
Consensus pattern (17 bp):
TACATAATTCAATTTAA
Found at i:70853425 original size:66 final size:66
Alignment explanation
Indices: 70853319--70853444 Score: 225
Period size: 66 Copynumber: 1.9 Consensus size: 66
70853309 ATACTCGGGA
*
70853319 GTCCCGTACACATGGTACCATACCAATACCATATCCCAGATATGGTCTTACATGTAATCTCGTAT
1 GTCCCATACACATGGTACCATACCAATACCATATCCCAGATATGGTCTTACATGTAATCTCGTAT
70853384 C
66 C
* *
70853385 GTCCCATACACATGGTTCCATACCAATGCCATATCCCAGATATGGTCTTACATGTAATCT
1 GTCCCATACACATGGTACCATACCAATACCATATCCCAGATATGGTCTTACATGTAATCT
70853445 TGTTTCGATG
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
66 57 1.00
ACGTcount: A:0.29, C:0.29, G:0.13, T:0.29
Consensus pattern (66 bp):
GTCCCATACACATGGTACCATACCAATACCATATCCCAGATATGGTCTTACATGTAATCTCGTAT
C
Found at i:70860055 original size:48 final size:48
Alignment explanation
Indices: 70859983--70860090 Score: 135
Period size: 48 Copynumber: 2.2 Consensus size: 48
70859973 TATCCCGAAT
* **
70859983 ATGGTCTTATACGAAATCTCATGTCAGTGCCAATGCCATGTCCCAAAC
1 ATGGTCTTACACGAAATCTCATGTCAGTGCCAATGAAATGTCCCAAAC
* * * * *
70860031 ATGGTCTTACACGATATCTTATGTCAGTGCCGATGAAATTTCCCAGAC
1 ATGGTCTTACACGAAATCTCATGTCAGTGCCAATGAAATGTCCCAAAC
*
70860079 ATAGTCTTACAC
1 ATGGTCTTACAC
70860091 TAGCACACAT
Statistics
Matches: 51, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 51 1.00
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.30
Consensus pattern (48 bp):
ATGGTCTTACACGAAATCTCATGTCAGTGCCAATGAAATGTCCCAAAC
Found at i:70860112 original size:48 final size:48
Alignment explanation
Indices: 70860071--70860330 Score: 403
Period size: 48 Copynumber: 5.4 Consensus size: 48
70860061 CGATGAAATT
* * * *
70860071 TCCCAGACATAGTCTTACACTAGCACACATATCAGCACCGATGCCATG
1 TCCCAGACATGGTCTTACACTGGCTCACATATCAACACCGATGCCATG
*
70860119 TCCCAGACATGGTCTTACACTGGCTCACATATCCACACCGATGCCATG
1 TCCCAGACATGGTCTTACACTGGCTCACATATCAACACCGATGCCATG
* * *
70860167 TCCCAGACATGGTCTTGCACTGGCTTACATATCAACGCCGATGCCATG
1 TCCCAGACATGGTCTTACACTGGCTCACATATCAACACCGATGCCATG
* * * **
70860215 TCCTAAACATGGTCTTACACTGGATCACATATCAATGCCGATGCCATG
1 TCCCAGACATGGTCTTACACTGGCTCACATATCAACACCGATGCCATG
70860263 TCCCAGACATGGTCTTACACTGGCTCACATATCAACACCGATGCCATG
1 TCCCAGACATGGTCTTACACTGGCTCACATATCAACACCGATGCCATG
70860311 TCCCAGACATGGTCTTACAC
1 TCCCAGACATGGTCTTACAC
70860331 GGGACATTAT
Statistics
Matches: 192, Mismatches: 20, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 192 1.00
ACGTcount: A:0.27, C:0.32, G:0.17, T:0.24
Consensus pattern (48 bp):
TCCCAGACATGGTCTTACACTGGCTCACATATCAACACCGATGCCATG
Found at i:70865351 original size:50 final size:50
Alignment explanation
Indices: 70865234--70865362 Score: 213
Period size: 50 Copynumber: 2.6 Consensus size: 50
70865224 AAGATGTGTC
** ** *
70865234 AGTGTAAGACCATGTCTAAGACATAACATCGGCACGGTTATGTGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGTTATGTAAGAGCT
70865284 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGTTATGTAAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGTTATGTAAGAGCT
70865334 AGTGTAAGACCATGTCTGGGACATGGCAT
1 AGTGTAAGACCATGTCTGGGACATGGCAT
70865363 TAGCACTTTA
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 74 1.00
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (50 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGTTATGTAAGAGCT
Found at i:70872803 original size:134 final size:133
Alignment explanation
Indices: 70872654--70873048 Score: 542
Period size: 134 Copynumber: 2.9 Consensus size: 133
70872644 ATTCAGCCAA
*
70872654 GAAAGTGTATATATGTGATAAGGCTAATGGCGATGTGATGAA-T-AAAGTGTATATGTGTGATAA
1 GAAAGTGTATATATGTGATAAGGCTAATGGCGATGTGATGAAGTGAAAGTGTATATATGTGATAA
70872717 GGCTAA-GCCGATGTGATGAATGTGAAAGTGTATATTATGTGATAAGGCCTAATGCGATGTGATG
66 GGCTAAGGCCGATGTGATGAATGTGAAAGTGTATA-TAT-TGATAAGGCCTAATGCGATGTGATG
70872781 AATGT
129 AATGT
70872786 GAAAGTGTATATATATGTGATAAGGCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
1 GAAAGTG--TATATATGTGATAAGGCTAATGG-CGATGTGATGAA-GTGAAAGTGTATATATGTG
*
70872851 ATAAGGCTAATGGCCGATGTGATGAATGTG-AAGTGTATATGTTGATAAGGCCTAATAGCGATGT
62 ATAAGGCTAA-GGCCGATGTGATGAATGTGAAAGTGTATATATTGATAAGGCCTAAT-GCGATGT
70872915 GATGAATGT
125 GATGAATGT
* *
70872924 GAAAGTGTATATGTGTGATAA-G-TAATAGCCGATGTGATGAATGTGAATAGTGTATATAATGTG
1 GAAAGTGTATATATGTGATAAGGCTAAT-GGCGATGTGATGAA-GTGAA-AGTGTATAT-ATGTG
70872987 AT-AGGCCTAATGGCCGAT-TGAT-AA-GTGAAAGTGTATA-ATTGATAAGGCCTAATGCCGATG
62 ATAAGG-CTAA-GGCCGATGTGATGAATGTGAAAGTGTATATATTGATAAGGCCTAATG-CGATG
70873047 TG
124 TG
70873049 TAATGAAAGT
Statistics
Matches: 243, Mismatches: 5, Indels: 29
0.88 0.02 0.10
Matches are distributed among these distances:
132 8 0.03
133 25 0.10
134 56 0.23
135 30 0.12
136 32 0.13
137 15 0.06
138 50 0.21
139 9 0.04
140 18 0.07
ACGTcount: A:0.33, C:0.07, G:0.29, T:0.31
Consensus pattern (133 bp):
GAAAGTGTATATATGTGATAAGGCTAATGGCGATGTGATGAAGTGAAAGTGTATATATGTGATAA
GGCTAAGGCCGATGTGATGAATGTGAAAGTGTATATATTGATAAGGCCTAATGCGATGTGATGAA
TGT
Found at i:70872913 original size:44 final size:46
Alignment explanation
Indices: 70872654--70873048 Score: 524
Period size: 46 Copynumber: 8.8 Consensus size: 46
70872644 ATTCAGCCAA
70872654 GAAAGTGTATATATGTGATAAGGCTAATGG-CGATGTGATGAA--T
1 GAAAGTGTATATATGTGATAAGGCTAATGGCCGATGTGATGAATGT
*
70872697 -AAAGTGTATATGTGTGATAAGGCTAA--GCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCTAATGGCCGATGTGATGAATGT
70872740 GAAAGTGTATATTATGTGATAAGGCCTAAT-G-CGATGTGATGAATGT
1 GAAAGTGTATA-TATGTGATAAGG-CTAATGGCCGATGTGATGAATGT
70872786 GAAAGTGTATATATATGTGATAAGGCTAATGGCCGATGTGATGAATGT
1 GAAAGTG--TATATATGTGATAAGGCTAATGGCCGATGTGATGAATGT
70872834 GAAAGTGTATATATGTGATAAGGCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCTAATGGCCGATGTGATGAATGT
* *
70872880 G-AAGTGTATATGT-TGATAAGGCCTAATAG-CGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGG-CTAATGGCCGATGTGATGAATGT
* *
70872924 GAAAGTGTATATGTGTGATAA-G-TAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCTAATGGCCGATGTGATGAATGT
70872968 GAATAGTGTATATAATGTGAT-AGGCCTAATGGCCGAT-TGAT-AA-GT
1 GAA-AGTGTATAT-ATGTGATAAGG-CTAATGGCCGATGTGATGAATGT
70873013 GAAAGTGTATA-AT-TGATAAGGCCTAAT-GCCGATGTG
1 GAAAGTGTATATATGTGATAAGG-CTAATGGCCGATGTG
70873049 TAATGAAAGT
Statistics
Matches: 324, Mismatches: 6, Indels: 45
0.86 0.02 0.12
Matches are distributed among these distances:
40 1 0.00
41 22 0.07
42 38 0.12
43 7 0.02
44 60 0.19
45 56 0.17
46 86 0.27
47 18 0.06
48 36 0.11
ACGTcount: A:0.33, C:0.07, G:0.29, T:0.31
Consensus pattern (46 bp):
GAAAGTGTATATATGTGATAAGGCTAATGGCCGATGTGATGAATGT
Found at i:70902968 original size:40 final size:40
Alignment explanation
Indices: 70902891--70903106 Score: 294
Period size: 40 Copynumber: 5.5 Consensus size: 40
70902881 AAACCAAGTA
* * * * *
70902891 CCTTCGGAATTTAG-CCGGATATAGCTACTTGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
*
70902930 CCTTCGGGACTTAGCCCGGTTATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
* * *
70902970 CCTACGGGACTTAG-CCAGATATAG-TACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
* *
70903008 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
* *
70903048 CCTTCGGGACTTAGCCCGGATATAGTAACTGGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
70903088 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
70903107 TTATCATCTG
Statistics
Matches: 158, Mismatches: 16, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
38 26 0.16
39 28 0.18
40 104 0.66
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
Found at i:70903031 original size:78 final size:78
Alignment explanation
Indices: 70902901--70903110 Score: 339
Period size: 78 Copynumber: 2.7 Consensus size: 78
70902891 CCTTCGGAAT
* *
70902901 TTAGCCGGATATAGCTACTTGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGCAACTCGCACA
1 TTAGCCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGCAACTCGCACA
70902966 AATGCCTACGGGAC
65 AATGCCTACGGGAC
* *
70902980 TTAGCCAGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAA
1 TTAGCCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGCAACTCGCACAA
*
70903045 ATGCCTTCGGGAC
66 ATGCCTACGGGAC
*
70903058 TTAGCCCGGATATAGTAACTGGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
1 TTAG-CCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
70903111 CATCTGAATA
Statistics
Matches: 122, Mismatches: 7, Indels: 3
0.92 0.05 0.02
Matches are distributed among these distances:
78 64 0.52
79 23 0.19
80 35 0.29
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (78 bp):
TTAGCCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGCAACTCGCACAA
ATGCCTACGGGAC
Found at i:70906297 original size:40 final size:39
Alignment explanation
Indices: 70906245--70906428 Score: 165
Period size: 40 Copynumber: 4.6 Consensus size: 39
70906235 TAACTCATTC
*
70906245 AATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-TTTAAAACTCGCACA
*** *
70906285 AATGCCTTCGGGACTTAACCCGGAATTGGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGG-ATTTAAAACTCGCACA
* *
70906325 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAA-AACTCGCACA
* ** * ** *
70906365 AATACCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGATTTA-AAAC-TCGCACA
*
70906406 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
70906429 CAGCATTCAA
Statistics
Matches: 116, Mismatches: 22, Indels: 12
0.77 0.15 0.08
Matches are distributed among these distances:
39 5 0.04
40 99 0.85
41 12 0.10
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAAAACTCGCACA
Found at i:70906307 original size:79 final size:80
Alignment explanation
Indices: 70906208--70906428 Score: 193
Period size: 80 Copynumber: 2.8 Consensus size: 80
70906198 CTCGTTCAAG
* * ** * *
70906208 TGCCTTCGGGACATAGCCCGGTCA-TAGTAACTCATTC-AATGCCTTCGGGACTTAACCCGGATT
1 TGCCTTCGGGACATAACCCGG-AATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGA-A
*
70906271 TTAA-AACTCGCACGAA
64 TTAATAACTCGCACAAA
* * * *
70906287 TGCCTTCGGGACTTAACCCGGAATTGGTATCTCGCACAAAGGCCTTCGGGACTTAACCCGGAATT
1 TGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATT
70906352 AATAACTCGCACAAA
66 AATAACTCGCACAAA
* * ** * * *
70906367 TACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGA-CATAACCCGGAAT-TAGTAACTCA-CACAAAGGCCTTCGGGACTTAACCCGGA
70906429 CAGCATTCAA
Statistics
Matches: 116, Mismatches: 20, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
78 1 0.01
79 36 0.31
80 73 0.63
81 6 0.05
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
TGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATT
AATAACTCGCACAAA
Found at i:70906388 original size:80 final size:80
Alignment explanation
Indices: 70906248--70906428 Score: 210
Period size: 80 Copynumber: 2.3 Consensus size: 80
70906238 CTCATTCAAT
* * *
70906248 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGACTTAACCCGGA-ATT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGGACTTAACCCGGATA-T
* *
70906312 GGT-A-TCTCGCACAAA
65 AGTCACT-TAGCACAAA
**
70906327 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTC-GGATCTTAGTCCGGAT
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGGA-CTTAACCCGGAT
70906390 ATAGTCACTTAGCACAAA
63 ATAGTCACTTAGCACAAA
*
70906408 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
70906429 CAGCATTCAA
Statistics
Matches: 88, Mismatches: 8, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
79 7 0.08
80 70 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGGACTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:70910175 original size:20 final size:20
Alignment explanation
Indices: 70910150--70910188 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
70910140 AATTAGGGCC
70910150 ACACGCCCGTGTGGATAGGG
1 ACACGCCCGTGTGGATAGGG
* *
70910170 ACACGCCCTTGTGGGTAGG
1 ACACGCCCGTGTGGATAGG
70910189 CTGTGTGGTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.18, C:0.26, G:0.38, T:0.18
Consensus pattern (20 bp):
ACACGCCCGTGTGGATAGGG
Found at i:70912161 original size:48 final size:48
Alignment explanation
Indices: 70912109--70912329 Score: 266
Period size: 48 Copynumber: 4.6 Consensus size: 48
70912099 ATGTCAATGT
* *
70912109 CGATGCCATGTCCCAAACTTGGTCTTACACTGGCTCACATATCCACGC
1 CGATGCCATGTCCCAGACTTGGTCTTACACTGGCTCACATATCAACGC
* * * *
70912157 CGATGTCATGTCCTAGACATT-GTCTTACTCTGGCTCACATATCAATGC
1 CGATGCCATGTCCCAGAC-TTGGTCTTACACTGGCTCACATATCAACGC
* * * * * *
70912205 CGATGCCCTGTCCCATACATGGTCTTACACTGACTCATATATCAACCC
1 CGATGCCATGTCCCAGACTTGGTCTTACACTGGCTCACATATCAACGC
* * * *
70912253 CGATGACC-TATCCCAGACATAGTCTTACACTGGCTCACATATCAACAC
1 CGATG-CCATGTCCCAGACTTGGTCTTACACTGGCTCACATATCAACGC
70912301 CGATGCCATGTCCCAGACTTGGTCTTACA
1 CGATGCCATGTCCCAGACTTGGTCTTACA
70912330 TGGGTCCTTA
Statistics
Matches: 144, Mismatches: 25, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
47 3 0.02
48 137 0.95
49 4 0.03
ACGTcount: A:0.25, C:0.33, G:0.15, T:0.27
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACTTGGTCTTACACTGGCTCACATATCAACGC
Found at i:70912217 original size:96 final size:96
Alignment explanation
Indices: 70912102--70912329 Score: 303
Period size: 96 Copynumber: 2.4 Consensus size: 96
70912092 AAATCTCATG
* * * * * *
70912102 TCAATGTCGATGCCATGTCCCAAACTTGGTCTTACACTGGCTCACATATCCACGCCGATGTCATG
1 TCAATGCCGATGCCATGTCCCAAACTTGGTCTTACACTGACTCACATATCAACCCCGATGACATA
* * *
70912167 TCCTAGACATTGTCTTACTCTGGCTCACATA
66 TCCCAGACATAGTCTTACACTGGCTCACATA
* * * * *
70912198 TCAATGCCGATGCCCTGTCCCATACATGGTCTTACACTGACTCATATATCAACCCCGATGACCTA
1 TCAATGCCGATGCCATGTCCCAAACTTGGTCTTACACTGACTCACATATCAACCCCGATGACATA
70912263 TCCCAGACATAGTCTTACACTGGCTCACATA
66 TCCCAGACATAGTCTTACACTGGCTCACATA
** *
70912294 TCAACACCGATGCCATGTCCCAGACTTGGTCTTACA
1 TCAATGCCGATGCCATGTCCCAAACTTGGTCTTACA
70912330 TGGGTCCTTA
Statistics
Matches: 113, Mismatches: 19, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
96 113 1.00
ACGTcount: A:0.25, C:0.32, G:0.15, T:0.28
Consensus pattern (96 bp):
TCAATGCCGATGCCATGTCCCAAACTTGGTCTTACACTGACTCACATATCAACCCCGATGACATA
TCCCAGACATAGTCTTACACTGGCTCACATA
Found at i:70918837 original size:47 final size:46
Alignment explanation
Indices: 70918775--70918904 Score: 152
Period size: 47 Copynumber: 2.8 Consensus size: 46
70918765 GTGCAAATAA
* * * ** *
70918775 TACCTTGATCTGGCTACAGGCCATGTTATAGGTATTTTGAGAGGAGT
1 TACCTTGATTTGGCTACGGGCCATG-TATAGGTACTCCGAGAGAAGT
* * *
70918822 TACCTTGATTTGGCTACGGGCTATCGTATAGGTACTCCGGGATAAGT
1 TACCTTGATTTGGCTACGGGCCAT-GTATAGGTACTCCGAGAGAAGT
70918869 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACT
1 TACCTTGATTTGGCTACGGGCCAT-GTATAGGTACT
70918905 TATTGATTGT
Statistics
Matches: 71, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
47 70 0.99
48 1 0.01
ACGTcount: A:0.22, C:0.18, G:0.28, T:0.33
Consensus pattern (46 bp):
TACCTTGATTTGGCTACGGGCCATGTATAGGTACTCCGAGAGAAGT
Found at i:70928910 original size:40 final size:40
Alignment explanation
Indices: 70928683--70928903 Score: 238
Period size: 39 Copynumber: 5.5 Consensus size: 40
70928673 ATGATGTCCA
* * * *
70928683 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCG
* *
70928723 GACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATATCCG
1 GGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-ATCCG
* * * * *
70928764 GACTAAGAT-CCGAAGGAATTTGTGCGAGATACTAATTCTG
1 GGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
70928804 GGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATCC-
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
*
70928842 GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAA-CCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCG
*
70928882 GGCTATGTCCCGAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTG
70928904 AACGAGTAGC
Statistics
Matches: 157, Mismatches: 17, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
38 6 0.04
39 54 0.34
40 50 0.32
41 47 0.30
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
Found at i:70928921 original size:79 final size:78
Alignment explanation
Indices: 70928732--70928926 Score: 225
Period size: 79 Copynumber: 2.5 Consensus size: 78
70928722 GGACTAAGAT
*
70928732 CCGAAGGCATTTGTGCGAGATACTAATATCCGGACTAAGATCCGAAGGAATTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATACT-ATATCCGG-TTAAGATCCGAAGGAATTTGTGCGAGATACT
* *
70928797 AATTCTGGGCTAAGC
64 AATACCGGGCTAAGC
* * * *
70928812 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTA
1 CCGAAGGCATTTGTGCGAGATACTATATCCGGTTAAGAT-CCGAAGGAATTTGTGCGAGATACTA
*
70928876 CA-ACCGGGCTATGTC
65 -ATACCGGGCTAAG-C
**
70928891 CCGAAGGCATTTGAACGAG-TAGCTATATCCGGTTAA
1 CCGAAGGCATTTGTGCGAGATA-CTATATCCGGTTAA
70928927 ATTTCGAAGG
Statistics
Matches: 100, Mismatches: 11, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
77 1 0.01
78 37 0.37
79 39 0.39
80 23 0.23
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.26
Consensus pattern (78 bp):
CCGAAGGCATTTGTGCGAGATACTATATCCGGTTAAGATCCGAAGGAATTTGTGCGAGATACTAA
TACCGGGCTAAGC
Found at i:70931181 original size:21 final size:21
Alignment explanation
Indices: 70931155--70931197 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
70931145 TAAATAAAAA
70931155 AGATGGATGGAGCATACAACT
1 AGATGGATGGAGCATACAACT
70931176 AGATGGATGGAGCATACAACT
1 AGATGGATGGAGCATACAACT
70931197 A
1 A
70931198 TCTCCTTAGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.40, C:0.14, G:0.28, T:0.19
Consensus pattern (21 bp):
AGATGGATGGAGCATACAACT
Found at i:70938024 original size:46 final size:46
Alignment explanation
Indices: 70937974--70938146 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
70937964 TGGTTGAGCA
*
70937974 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * *
70938020 TCCGAACTCGTTGAATTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
70938067 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
70938113 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
70938147 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 15, Indels: 14
0.78 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 60 0.57
47 28 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:70938132 original size:93 final size:93
Alignment explanation
Indices: 70937971--70938141 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
70937961 GGATGGTTGA
* *
70937971 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAAT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAAT
70938036 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * *
70938064 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAAT
70938129 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
70938142 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAAT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:70940168 original size:36 final size:36
Alignment explanation
Indices: 70940121--70940194 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
70940111 TTATTTCGGT
70940121 TTTAGCCTTTGCTTAATCTGGGTTGTAAGCGGACTG
1 TTTAGCCTTTGCTTAATCTGGGTTGTAAGCGGACTG
70940157 TTTAGCCTTTGCTTAATCTGGGTTGTAAGCGGACTG
1 TTTAGCCTTTGCTTAATCTGGGTTGTAAGCGGACTG
70940193 TT
1 TT
70940195 AAACTAGTTC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.16, C:0.16, G:0.27, T:0.41
Consensus pattern (36 bp):
TTTAGCCTTTGCTTAATCTGGGTTGTAAGCGGACTG
Found at i:70947758 original size:47 final size:44
Alignment explanation
Indices: 70947651--70947917 Score: 225
Period size: 47 Copynumber: 5.7 Consensus size: 44
70947641 TTTGTGAGCT
* * *
70947651 AGTGTAAGACATGTCTGGGACATGTATCGGCCATATTATG-AGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGG-CAT-TGA-GAAAAGCC
* *
70947697 AGTGTAAGACCATGTCTGGGACATGGCATTGGCATTGAGACCAAAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATTGAGA--AAAGCC
* * *
70947745 AGTGTAAGACATGTTTGGGACATGCATCGGCCTCGAGACAAAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATTGAG--AAAAGCC
* * *
70947791 AGTGTAAGACATGTCTGGGACATGCATCGGC-TACGAGATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCAT-TGAGA--AAAGCC
* * *
70947837 AGTGTAAGACTGTGTCTGGGACATGGCATCGAC-TTGAGATATACGCC
1 AGTGTAAGAC-ATGTCTGGGACAT-GCATCGGCATTGAGA-A-AAGCC
70947884 AGTGTAAGACCATGTCTGGGACATGGCATCGGCA
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCA
70947918 CCTTACCCAC
Statistics
Matches: 184, Mismatches: 22, Indels: 28
0.79 0.09 0.12
Matches are distributed among these distances:
44 1 0.01
45 2 0.01
46 76 0.41
47 77 0.42
48 28 0.15
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGAAAAGCC
Found at i:70947795 original size:46 final size:47
Alignment explanation
Indices: 70947651--70947916 Score: 240
Period size: 46 Copynumber: 5.7 Consensus size: 47
70947641 TTTGTGAGCT
* * ** *
70947651 AGTGTAAGACATGTCTGGGACAT-GTATCGGCCAT--ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCC-TCGA-GACAAAAGCC
* * * * *
70947697 AGTGTAAGACCATGTCTGGGACATGGCATTGGCATTGAGACCAAAGCT
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGGCCTCGAGACAAAAGCC
*
70947745 AGTGTAAGACATGTTTGGGACAT-GCATCGGCCTCGAGACAAAAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCCTCGAGACAAAAGCC
** * *
70947791 AGTGTAAGACATGTCTGGGACAT-GCATCGG-CTACGAGATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCCT-CGAGACAAAAGCC
* * * * * *
70947837 AGTGTAAGACTGTGTCTGGGACATGGCATC-GACTTGAGATATACGCC
1 AGTGTAAGAC-ATGTCTGGGACATGGCATCGGCCTCGAGACAAAAGCC
70947884 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGGC
70947917 ACCTTACCCA
Statistics
Matches: 182, Mismatches: 28, Indels: 18
0.80 0.12 0.08
Matches are distributed among these distances:
45 2 0.01
46 75 0.41
47 75 0.41
48 29 0.16
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGGCATCGGCCTCGAGACAAAAGCC
Found at i:70947885 original size:93 final size:94
Alignment explanation
Indices: 70947693--70947917 Score: 273
Period size: 93 Copynumber: 2.4 Consensus size: 94
70947683 ATATTATGAG
* *
70947693 AGCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCATTGAGACCAAAGCTAGTGTAAGACATG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGACCAAAGCTAGTGTAAGACATG
*
70947758 TTTGGGACATGCATCGGCCTCGAGACAAA
66 TTTGGGACATGCATCGGACTCGAGACAAA
** *
70947787 AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-TACGAGATGATAG-TCAGTGTAAGAC-
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT-CGAGACCAAAGCT-AGTGTAAGACA
* * *
70947847 TGTGTCTGGGACATGGCATC-GACTTGAGATATA
64 TGT-T-TGGGACAT-GCATCGGACTCGAGACAAA
*
70947880 CGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
70947918 CCTTACCCAC
Statistics
Matches: 113, Mismatches: 10, Indels: 14
0.82 0.07 0.10
Matches are distributed among these distances:
91 5 0.04
92 25 0.22
93 43 0.38
94 32 0.28
95 8 0.07
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (94 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGACCAAAGCTAGTGTAAGACATG
TTTGGGACATGCATCGGACTCGAGACAAA
Found at i:70947904 original size:140 final size:141
Alignment explanation
Indices: 70947651--70947916 Score: 351
Period size: 140 Copynumber: 1.9 Consensus size: 141
70947641 TTTGTGAGCT
* * *
70947651 AGTGTAAGACATGTCTGGGACATGTATCGGCCATATTATGAGAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCAGATGATGAGAGCCAGTGTAAGACCATGTCTGG
* * * *
70947716 GACATGGCATTGGCATTGAGACCAAAGCTAGTGTAAGACATGTTTGGGACAT-GCATCGGCCTCG
66 GACATGGCATCGACATTGAGACCAAAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCCTCG
70947780 AGACAAAAGCC
131 AGACAAAAGCC
* * * **
70947791 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-GATGATAGTCAGTGTAAGACTGTGTCTG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCA-GATGATGAGAGCCAGTGTAAGACCATGTCTG
* *
70947855 GGACATGGCATCGAC-TTGAGA-TATACGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
65 GGACATGGCATCGACATTGAGACCA-AAGCCAGTGTAAGA-CATGTCTGGGACATGGCATCGGC
70947917 ACCTTACCCA
Statistics
Matches: 108, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
138 1 0.01
139 18 0.17
140 80 0.74
141 9 0.08
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (141 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCAGATGATGAGAGCCAGTGTAAGACCATGTCTGG
GACATGGCATCGACATTGAGACCAAAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCCTCG
AGACAAAAGCC
Found at i:70954233 original size:21 final size:21
Alignment explanation
Indices: 70954204--70954245 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
70954194 ACTTCTTCGA
70954204 ATTCATTTACCGATTATTATT
1 ATTCATTTACCGATTATTATT
* * *
70954225 ATTCGTTTATCTATTATTATT
1 ATTCATTTACCGATTATTATT
70954246 CTTTATATTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.26, C:0.12, G:0.05, T:0.57
Consensus pattern (21 bp):
ATTCATTTACCGATTATTATT
Found at i:70954241 original size:18 final size:17
Alignment explanation
Indices: 70954218--70954251 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
70954208 ATTTACCGAT
70954218 TATTATTATTCGTTTATC
1 TATTATTATTC-TTTATC
70954236 TATTATTATTCTTTAT
1 TATTATTATTCTTTAT
70954252 ATTACAGGCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.24, C:0.09, G:0.03, T:0.65
Consensus pattern (17 bp):
TATTATTATTCTTTATC
Found at i:70954254 original size:15 final size:17
Alignment explanation
Indices: 70954218--70954255 Score: 53
Period size: 18 Copynumber: 2.3 Consensus size: 17
70954208 ATTTACCGAT
70954218 TATTATTATTCGTTTATC
1 TATTATTATTCGTTTA-C
70954236 TATTATTATTC-TTTA-
1 TATTATTATTCGTTTAC
70954251 TATTA
1 TATTA
70954256 CAGGCTTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
15 5 0.25
17 4 0.20
18 11 0.55
ACGTcount: A:0.26, C:0.08, G:0.03, T:0.63
Consensus pattern (17 bp):
TATTATTATTCGTTTAC
Found at i:70954946 original size:66 final size:66
Alignment explanation
Indices: 70954840--70954971 Score: 246
Period size: 66 Copynumber: 2.0 Consensus size: 66
70954830 CCACCAATCT
* *
70954840 TGAGGTACCTACACGCCATTTTAGCTCACATGATTACAGGGAGGTGAGAGAGCACTGGCGTCGTC
1 TGAGGTACCTACACGCCATTTTAGCTCACACGATTACAGGGAGGTGAGAGAGCACTAGCGTCGTC
70954905 A
66 A
70954906 TGAGGTACCTACACGCCATTTTAGCTCACACGATTACAGGGAGGTGAGAGAGCACTAGCGTCGTC
1 TGAGGTACCTACACGCCATTTTAGCTCACACGATTACAGGGAGGTGAGAGAGCACTAGCGTCGTC
70954971 A
66 A
70954972 ACACTCACGA
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 64 1.00
ACGTcount: A:0.27, C:0.23, G:0.28, T:0.22
Consensus pattern (66 bp):
TGAGGTACCTACACGCCATTTTAGCTCACACGATTACAGGGAGGTGAGAGAGCACTAGCGTCGTC
A
Found at i:70972560 original size:40 final size:40
Alignment explanation
Indices: 70972468--70972615 Score: 163
Period size: 40 Copynumber: 3.6 Consensus size: 40
70972458 CGAATTCTCA
* * *
70972468 CACACTAAGTGCCAATACATAGTCGAAGCTATTTTA-ATCTCG
1 CACACTAAGTGCC-ATACATAGCCGAAGCTA-TCTAGA-ATCG
* *
70972510 CACACTAAGTGCCATACATAACCGAATCTATCTAGAATCG
1 CACACTAAGTGCCATACATAGCCGAAGCTATCTAGAATCG
* * * * * *
70972550 CACACTAAGTGTCATAGATAGTCGAAGCTATCTTGATTCA
1 CACACTAAGTGCCATACATAGCCGAAGCTATCTAGAATCG
70972590 CACACTAAGTGCCATACATAGCCGAA
1 CACACTAAGTGCCATACATAGCCGAA
70972616 CTGTCATCAA
Statistics
Matches: 89, Mismatches: 16, Indels: 4
0.82 0.15 0.04
Matches are distributed among these distances:
40 61 0.69
41 15 0.17
42 13 0.15
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (40 bp):
CACACTAAGTGCCATACATAGCCGAAGCTATCTAGAATCG
Found at i:70974172 original size:20 final size:20
Alignment explanation
Indices: 70974149--70974191 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
70974139 CGAACAGGGA
*
70974149 CACTGAAGTGTATATAGCGG
1 CACTGAAGTGTAAATAGCGG
*
70974169 CACTGAAGTGTAAATAGGGG
1 CACTGAAGTGTAAATAGCGG
70974189 CAC
1 CAC
70974192 AGACGTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.33, C:0.16, G:0.30, T:0.21
Consensus pattern (20 bp):
CACTGAAGTGTAAATAGCGG
Found at i:70984465 original size:21 final size:21
Alignment explanation
Indices: 70984439--70984487 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
70984429 CAAGGATATG
* *
70984439 AGGCATCTGAGTACGAAAACT-
1 AGGCATCCGAGTAC-AAAAATA
70984460 AGGCATCCGAGTACAAAAATA
1 AGGCATCCGAGTACAAAAATA
70984481 AGGCATC
1 AGGCATC
70984488 ATGGAGGGGT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 5 0.20
21 20 0.80
ACGTcount: A:0.41, C:0.20, G:0.22, T:0.16
Consensus pattern (21 bp):
AGGCATCCGAGTACAAAAATA
Found at i:70986165 original size:14 final size:14
Alignment explanation
Indices: 70986141--70986236 Score: 56
Period size: 14 Copynumber: 6.9 Consensus size: 14
70986131 ATAAATACAT
*
70986141 ATCTTTGAATCCTC
1 ATCTATGAATCCTC
*
70986155 A-CTTATGAATCCTT
1 ATC-TATGAATCCTC
70986169 ATCTATGAATCCGT-
1 ATCTATGAATCC-TC
* * *
70986183 ATGTATAAAT-CTGT
1 ATCTATGAATCCT-C
*
70986197 ATCTATGAATCCAC
1 ATCTATGAATCCTC
*
70986211 ATTTATGAAT-CTGC
1 ATCTATGAATCCT-C
*
70986225 ATGTATGAATCC
1 ATCTATGAATCC
70986237 ACATTTGAGA
Statistics
Matches: 63, Mismatches: 11, Indels: 15
0.71 0.12 0.17
Matches are distributed among these distances:
12 1 0.02
13 3 0.05
14 55 0.87
15 4 0.06
ACGTcount: A:0.30, C:0.20, G:0.11, T:0.39
Consensus pattern (14 bp):
ATCTATGAATCCTC
Found at i:70986221 original size:28 final size:28
Alignment explanation
Indices: 70986140--70986242 Score: 109
Period size: 28 Copynumber: 3.7 Consensus size: 28
70986130 TATAAATACA
* * *
70986140 TATCTTTGAATCCTCACTTATGAATCCT-
1 TATCTATGAATCCACATTTATGAAT-CTG
** * *
70986168 TATCTATGAATCCGTATGTATAAATCTG
1 TATCTATGAATCCACATTTATGAATCTG
70986196 TATCTATGAATCCACATTTATGAATCTG
1 TATCTATGAATCCACATTTATGAATCTG
* *
70986224 CATGTATGAATCCACATTT
1 TATCTATGAATCCACATTT
70986243 GAGAGTCCAT
Statistics
Matches: 62, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
27 2 0.03
28 60 0.97
ACGTcount: A:0.30, C:0.19, G:0.11, T:0.40
Consensus pattern (28 bp):
TATCTATGAATCCACATTTATGAATCTG
Found at i:70987834 original size:17 final size:17
Alignment explanation
Indices: 70987812--70987851 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
70987802 CAAACTGTCC
*
70987812 AACCTTTTTTCCCAATA
1 AACCTTTTGTCCCAATA
**
70987829 AACCTTTTGTCCCGGTA
1 AACCTTTTGTCCCAATA
70987846 AACCTT
1 AACCTT
70987852 CACTTTTTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.25, C:0.30, G:0.07, T:0.38
Consensus pattern (17 bp):
AACCTTTTGTCCCAATA
Found at i:70991392 original size:24 final size:24
Alignment explanation
Indices: 70991365--70991413 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
70991355 AAGAAATTGT
70991365 TAGCTCAAACATCTCGAAGATCAA
1 TAGCTCAAACATCTCGAAGATCAA
70991389 TAGCTCAAACATCTCGAAGATCAA
1 TAGCTCAAACATCTCGAAGATCAA
70991413 T
1 T
70991414 GGAGTGCTTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.41, C:0.24, G:0.12, T:0.22
Consensus pattern (24 bp):
TAGCTCAAACATCTCGAAGATCAA
Found at i:71001011 original size:32 final size:31
Alignment explanation
Indices: 71000945--71001011 Score: 73
Period size: 32 Copynumber: 2.1 Consensus size: 31
71000935 ATAGCAATTG
* * * *
71000945 AACTCTTTTTAAAAGATTAATGGTCAAATTT
1 AACTCTTTTTAAAAAATTAAAGCTCAAATCT
71000976 AACTCTTTTTAAAAAAATTAAAGACT-AAATCT
1 AACTCTTTTT-AAAAAATTAAAG-CTCAAATCT
71001008 AACT
1 AACT
71001012 AAAAATAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
31 10 0.33
32 19 0.63
33 1 0.03
ACGTcount: A:0.45, C:0.12, G:0.06, T:0.37
Consensus pattern (31 bp):
AACTCTTTTTAAAAAATTAAAGCTCAAATCT
Found at i:71001845 original size:20 final size:18
Alignment explanation
Indices: 71001792--71001875 Score: 57
Period size: 17 Copynumber: 4.7 Consensus size: 18
71001782 AAAACTATAA
*
71001792 AAAAATA-AAAAATTATT
1 AAAAATATAAAACTTATT
* * **
71001809 GAATAT-TAAAAAATATT
1 AAAAATATAAAACTTATT
*
71001826 AAAATTAATACAAACTTATT
1 AAAAAT-ATA-AAACTTATT
71001846 AAAAATATAAAACTTA-T
1 AAAAATATAAAACTTATT
*
71001863 AAATATTATAAAA
1 AAA-AATATAAAA
71001876 ATTCTAATAA
Statistics
Matches: 52, Mismatches: 10, Indels: 9
0.73 0.14 0.13
Matches are distributed among these distances:
17 20 0.38
18 15 0.29
19 5 0.10
20 12 0.23
ACGTcount: A:0.63, C:0.04, G:0.01, T:0.32
Consensus pattern (18 bp):
AAAAATATAAAACTTATT
Found at i:71001860 original size:18 final size:18
Alignment explanation
Indices: 71001772--71001878 Score: 67
Period size: 18 Copynumber: 5.8 Consensus size: 18
71001762 TAATTACAGG
*
71001772 AAAAATATGAAAAACTA-T
1 AAAAATAT-AAAAATTATT
*
71001790 AAAAAAATAAAAAATTATT
1 AAAAATAT-AAAAATTATT
* * *
71001809 GAATAT-TAAAAAATATT
1 AAAAATATAAAAATTATT
* *
71001826 AAAATTAATACAAACTTATT
1 AAAAAT-ATA-AAAATTATT
*
71001846 AAAAATATAAAACTTA-T
1 AAAAATATAAAAATTATT
*
71001863 AAATATTATAAAAATT
1 AAA-AATATAAAAATT
71001879 CTAATAAATT
Statistics
Matches: 69, Mismatches: 15, Indels: 10
0.73 0.16 0.11
Matches are distributed among these distances:
17 16 0.23
18 32 0.46
19 9 0.13
20 12 0.17
ACGTcount: A:0.64, C:0.04, G:0.02, T:0.31
Consensus pattern (18 bp):
AAAAATATAAAAATTATT
Found at i:71002022 original size:10 final size:9
Alignment explanation
Indices: 71001968--71002027 Score: 50
Period size: 9 Copynumber: 6.4 Consensus size: 9
71001958 TTAAAAGATA
71001968 ATAAAATATT
1 ATAAAA-ATT
71001978 ATAAAAATT
1 ATAAAAATT
*
71001987 ATTAAAA-T
1 ATAAAAATT
*
71001995 ATTAAAATTT
1 A-TAAAAATT
*
71002005 ATATAAACTT
1 ATA-AAAATT
*
71002015 ATAAAAACT
1 ATAAAAATT
71002024 ATAA
1 ATAA
71002028 TTTTTTTTTT
Statistics
Matches: 41, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
8 2 0.05
9 23 0.56
10 16 0.39
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (9 bp):
ATAAAAATT
Found at i:71002503 original size:18 final size:18
Alignment explanation
Indices: 71002482--71002620 Score: 68
Period size: 19 Copynumber: 7.2 Consensus size: 18
71002472 TTTAAGTTTA
71002482 TATAAATTTTAATATTTT
1 TATAAATTTTAATATTTT
* * *
71002500 TAT-ACTTTTCATA-CTT
1 TATAAATTTTAATATTTT
*
71002516 TATATAATTATAATAATTTT
1 TATA-AATTTTAAT-ATTTT
71002536 TATAGAATTTTAATACATTTT
1 TATA-AATTTTAAT--ATTTT
* * *
71002557 TACAAAAAATTTAAATAAATTT
1 T---ATAAATTTTAAT-ATTTT
*
71002579 TATTAATTTTATATATTTT
1 TATAAATTTTA-ATATTTT
*
71002598 TATAATTTATTAGAT-TTTT
1 TATAAATT-TTA-ATATTTT
71002617 TATA
1 TATA
71002621 TTTTCAATAA
Statistics
Matches: 90, Mismatches: 21, Indels: 19
0.69 0.16 0.15
Matches are distributed among these distances:
16 5 0.06
17 8 0.09
18 9 0.10
19 26 0.29
20 21 0.23
21 6 0.07
22 5 0.06
23 8 0.09
24 2 0.02
ACGTcount: A:0.40, C:0.04, G:0.01, T:0.55
Consensus pattern (18 bp):
TATAAATTTTAATATTTT
Found at i:71002692 original size:48 final size:48
Alignment explanation
Indices: 71002596--71002689 Score: 131
Period size: 48 Copynumber: 2.0 Consensus size: 48
71002586 TTTATATATT
*
71002596 TTTATAATTTATTAGATTTTTTATATTTTCAATAATATTTATAATTTA
1 TTTATAATTTATTAGAGTTTTTATATTTTCAATAATATTTATAATTTA
*
71002644 TTTATAAATTTA-TAGAGTTTTTATATTTTTAAT-AT-TTATATAATTT
1 TTTAT-AATTTATTAGAGTTTTTATATTTTCAATAATATT-TATAATTT
71002690 TATAACTTTT
Statistics
Matches: 42, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
46 2 0.05
47 10 0.24
48 24 0.57
49 6 0.14
ACGTcount: A:0.35, C:0.01, G:0.03, T:0.61
Consensus pattern (48 bp):
TTTATAATTTATTAGAGTTTTTATATTTTCAATAATATTTATAATTTA
Found at i:71016488 original size:6 final size:6
Alignment explanation
Indices: 71016477--71016538 Score: 61
Period size: 6 Copynumber: 10.2 Consensus size: 6
71016467 TAGGTTTCTC
* ** * * *
71016477 AAAATG AAAATG GAAATG CTAATG CAAATG CAAATG GAAATG AAAATG
1 AAAATG AAAATG AAAATG AAAATG AAAATG AAAATG AAAATG AAAATG
71016525 AAAATG AGAAATG A
1 AAAATG A-AAATG A
71016539 TACATTTGTA
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
6 43 0.88
7 6 0.12
ACGTcount: A:0.56, C:0.05, G:0.21, T:0.18
Consensus pattern (6 bp):
AAAATG
Found at i:71021750 original size:41 final size:41
Alignment explanation
Indices: 71021621--71021775 Score: 195
Period size: 41 Copynumber: 3.7 Consensus size: 41
71021611 AATCGTACCA
* * ** *
71021621 ATGCCATATCCTAGATATGGACTTACATGTAATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACA-CAAATCTCATATCG
* * *
71021663 ATGCCAATAGCCCAGCTATGGTCTTACACGAAATCTCACATCG
1 ATGCC-ATATCCCAGATATGGTCTTACAC-AAATCTCATATCG
71021706 ATGCCATATCCCAGATATGGTCTTACACAAATCTCATA-CTG
1 ATGCCATATCCCAGATATGGTCTTACACAAATCTCATATC-G
71021747 ATGCCATATCCCAGATATGGTCTTACACA
1 ATGCCATATCCCAGATATGGTCTTACACA
71021776 TAAACTTGGT
Statistics
Matches: 99, Mismatches: 11, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
40 1 0.01
41 39 0.39
42 26 0.26
43 33 0.33
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (41 bp):
ATGCCATATCCCAGATATGGTCTTACACAAATCTCATATCG
Found at i:71022017 original size:58 final size:58
Alignment explanation
Indices: 71021927--71022042 Score: 232
Period size: 58 Copynumber: 2.0 Consensus size: 58
71021917 AATTAAAATA
71021927 ATGCATTATTTACATAAGGACTTACCTCAGTACAAAAATAGTAGAAATAGGACCTAAT
1 ATGCATTATTTACATAAGGACTTACCTCAGTACAAAAATAGTAGAAATAGGACCTAAT
71021985 ATGCATTATTTACATAAGGACTTACCTCAGTACAAAAATAGTAGAAATAGGACCTAAT
1 ATGCATTATTTACATAAGGACTTACCTCAGTACAAAAATAGTAGAAATAGGACCTAAT
71022043 CGTCAAACAC
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 58 1.00
ACGTcount: A:0.43, C:0.16, G:0.14, T:0.28
Consensus pattern (58 bp):
ATGCATTATTTACATAAGGACTTACCTCAGTACAAAAATAGTAGAAATAGGACCTAAT
Found at i:71030353 original size:29 final size:30
Alignment explanation
Indices: 71030305--71030396 Score: 125
Period size: 30 Copynumber: 3.1 Consensus size: 30
71030295 AAAGACGTAA
*
71030305 GGAGATGAGGATTTTAGGGAAAGAGGAATT
1 GGAGACGAGGATTTTAGGGAAAGAGGAATT
71030335 GGAGACGAGGATTTT-GGGATAA-AGGAATT
1 GGAGACGAGGATTTTAGGGA-AAGAGGAATT
* * *
71030364 AGAGACAAGGATTTTAGGGAGAGAGGAATT
1 GGAGACGAGGATTTTAGGGAAAGAGGAATT
71030394 GGA
1 GGA
71030397 AAGCATTTTT
Statistics
Matches: 54, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
29 25 0.46
30 29 0.54
ACGTcount: A:0.37, C:0.02, G:0.39, T:0.22
Consensus pattern (30 bp):
GGAGACGAGGATTTTAGGGAAAGAGGAATT
Found at i:71034391 original size:40 final size:40
Alignment explanation
Indices: 71034331--71034442 Score: 156
Period size: 40 Copynumber: 2.8 Consensus size: 40
71034321 TATACCTAAC
*
71034331 TGCACATACGTG-CCTCTGCTTGTACTTTGGTACCCCTGAT
1 TGCACATACGTGCCCT-TGCTTATACTTTGGTACCCCTGAT
71034371 TGCACATACGTGCCCTTGCTTATACTTTGGTACCCCTGAT
1 TGCACATACGTGCCCTTGCTTATACTTTGGTACCCCTGAT
** *
71034411 CACACATACGTGCCCCTG-TCTATACTTTGGTA
1 TGCACATACGTGCCCTTGCT-TATACTTTGGTA
71034443 ATTTCAGTCG
Statistics
Matches: 66, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
39 1 0.02
40 62 0.94
41 3 0.05
ACGTcount: A:0.18, C:0.30, G:0.18, T:0.34
Consensus pattern (40 bp):
TGCACATACGTGCCCTTGCTTATACTTTGGTACCCCTGAT
Found at i:71039559 original size:15 final size:15
Alignment explanation
Indices: 71039527--71039555 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
71039517 ATTTTCTGTG
71039527 TTTATAATGTGTGAA
1 TTTATAATGTGTGAA
71039542 TTTAT-ATGTGTGAA
1 TTTATAATGTGTGAA
71039556 ATTTTTGTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.31, C:0.00, G:0.21, T:0.48
Consensus pattern (15 bp):
TTTATAATGTGTGAA
Found at i:71040353 original size:18 final size:16
Alignment explanation
Indices: 71040321--71040359 Score: 51
Period size: 18 Copynumber: 2.3 Consensus size: 16
71040311 TTAGTAAATA
71040321 AATAATAAAATGTTAT
1 AATAATAAAATGTTAT
*
71040337 TATAATAATATATGTTAT
1 AATAATAA-A-ATGTTAT
71040355 AATAA
1 AATAA
71040360 AATTAAACAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
16 7 0.37
17 1 0.05
18 11 0.58
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (16 bp):
AATAATAAAATGTTAT
Found at i:71041282 original size:43 final size:43
Alignment explanation
Indices: 71041235--71041319 Score: 118
Period size: 43 Copynumber: 2.0 Consensus size: 43
71041225 GGATTTCCAA
* *
71041235 TATGTG-TTCTCATGTAAGACCATGTCTGGGACATCGGCATCGG
1 TATGTGATTCTCA-GTAAGACCATGTCTAGGACATCAGCATCGG
* *
71041278 TATGTGATTTTGAGTAAGACCATGTCTAGGACATCAGCATCG
1 TATGTGATTCTCAGTAAGACCATGTCTAGGACATCAGCATCG
71041320 TAATTGTGAT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
43 33 0.89
44 4 0.11
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.31
Consensus pattern (43 bp):
TATGTGATTCTCAGTAAGACCATGTCTAGGACATCAGCATCGG
Found at i:71041338 original size:43 final size:43
Alignment explanation
Indices: 71041247--71041341 Score: 122
Period size: 43 Copynumber: 2.2 Consensus size: 43
71041237 TGTGTTCTCA
* * *
71041247 TGTAAGACCATGTCTGGGACATCGGCATCGGTATGTGATTTTG
1 TGTAAGACCATGTCTAGGACATCAGCATCGGTATGTGATTTCG
*
71041290 AGTAAGACCATGTCTAGGACATCAGCATC-GTAATTGTGA-TTCG
1 TGTAAGACCATGTCTAGGACATCAGCATCGGT-A-TGTGATTTCG
71041333 TGTAAGACC
1 TGTAAGACC
71041342 CCATCTGGGA
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
42 2 0.04
43 38 0.84
44 5 0.11
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.29
Consensus pattern (43 bp):
TGTAAGACCATGTCTAGGACATCAGCATCGGTATGTGATTTCG
Found at i:71045780 original size:39 final size:39
Alignment explanation
Indices: 71045726--71045919 Score: 273
Period size: 39 Copynumber: 5.0 Consensus size: 39
71045716 CAAGACACTG
*
71045726 GAAATGTATCCGGGCTAAAGTCCCACAGGCTTCGTGCTA
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTA
* *
71045765 GAAATGTATCCGGGCTAAAGTCCCGCAAGCTTCGTGCTG
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTA
* * * *
71045804 GAAATATATTCGGGCTAAAGTCCCGTAGGCTTCGTGCTG
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTA
*
71045843 GAAATGTATCCGGGCTAAAGTCCCGTAGGCTTCGTGC-A
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTA
* * *
71045881 GGAAATGTATCCGGGCTAAAGTCCTGTAGGCTTTGTGCT
1 -GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCT
71045920 GGTAATATAA
Statistics
Matches: 141, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 141 1.00
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (39 bp):
GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTA
Found at i:71045910 original size:78 final size:78
Alignment explanation
Indices: 71045725--71045921 Score: 304
Period size: 78 Copynumber: 2.5 Consensus size: 78
71045715 GCAAGACACT
** *
71045725 GGAAATGTATCCGGGCTAAAGTCCCACAGGCTTCGTGCTAGAAATGTATCCGGGCTAAAGTCCCG
1 GGAAATGTATCCGGGCTAAAGTCCCGTAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCCCG
*
71045790 CAAGCTTCGTGCT
66 CAAGCTTCGTGCA
* *
71045803 GGAAATATATTCGGGCTAAAGTCCCGTAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCCCG
1 GGAAATGTATCCGGGCTAAAGTCCCGTAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCCCG
* *
71045868 TAGGCTTCGTGCA
66 CAAGCTTCGTGCA
* *
71045881 GGAAATGTATCCGGGCTAAAGTCCTGTAGGCTTTGTGCTGG
1 GGAAATGTATCCGGGCTAAAGTCCCGTAGGCTTCGTGCTGG
71045922 TAATATAATT
Statistics
Matches: 107, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
78 107 1.00
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.25
Consensus pattern (78 bp):
GGAAATGTATCCGGGCTAAAGTCCCGTAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCCCG
CAAGCTTCGTGCA
Found at i:71048515 original size:41 final size:44
Alignment explanation
Indices: 71048402--71048534 Score: 148
Period size: 45 Copynumber: 3.0 Consensus size: 44
71048392 AGGATTTCTG
* ** *
71048402 ATATGTGTTCTCGTGTAAGACCATGTCTGGGATGTTGGCATCGAT
1 ATATGTGAT-TCGTGTAAGACCATGTCTGGGACATCGGCATCGAT
*
71048447 ATATGTGGTTACGTGTAAGACCATGTCTGGGACATCGGCATC-AT
1 ATATGTGATT-CGTGTAAGACCATGTCTGGGACATCGGCATCGAT
* *
71048491 AT-T-TGATTCGTGTAAGACCCTGTCTGGGACAGT-GGCATTGAT
1 ATATGTGATTCGTGTAAGACCATGTCTGGGACA-TCGGCATCGAT
71048533 AT
1 AT
71048535 GAGATAACAT
Statistics
Matches: 78, Mismatches: 7, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
41 27 0.35
42 9 0.12
43 1 0.01
44 5 0.06
45 36 0.46
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.33
Consensus pattern (44 bp):
ATATGTGATTCGTGTAAGACCATGTCTGGGACATCGGCATCGAT
Found at i:71051821 original size:21 final size:20
Alignment explanation
Indices: 71051797--71051841 Score: 81
Period size: 21 Copynumber: 2.2 Consensus size: 20
71051787 CAACTATGAG
71051797 TTCAAACACAAATTAGCCAA
1 TTCAAACACAAATTAGCCAA
71051817 CTTCAAACACAAATTAGCCAA
1 -TTCAAACACAAATTAGCCAA
71051838 TTCA
1 TTCA
71051842 CATCGCTAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 4 0.17
21 20 0.83
ACGTcount: A:0.47, C:0.27, G:0.04, T:0.22
Consensus pattern (20 bp):
TTCAAACACAAATTAGCCAA
Found at i:71056676 original size:28 final size:27
Alignment explanation
Indices: 71056613--71056764 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
71056603 ATATTAAGTC
* * *
71056613 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
71056640 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
71056668 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
71056695 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
71056723 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
71056750 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
71056765 GCACAATTTA
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:71056697 original size:55 final size:55
Alignment explanation
Indices: 71056613--71056764 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
71056603 ATATTAAGTC
* * *
71056613 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
71056668 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
71056723 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCT
71056765 GCACAATTTA
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:71064736 original size:28 final size:27
Alignment explanation
Indices: 71064673--71064824 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
71064663 ATATTAAGTC
* * *
71064673 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
71064700 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
71064728 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
71064755 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
71064783 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
71064810 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
71064825 GCACAATTTA
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:71064757 original size:55 final size:55
Alignment explanation
Indices: 71064673--71064824 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
71064663 ATATTAAGTC
* * *
71064673 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
71064728 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
71064783 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCT
71064825 GCACAATTTA
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:71069017 original size:16 final size:16
Alignment explanation
Indices: 71068996--71069032 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
71068986 AAAACAAACT
71068996 ATGTTTTAGGAAACCC
1 ATGTTTTAGGAAACCC
71069012 ATGTTTTAGGAAACCC
1 ATGTTTTAGGAAACCC
71069028 ATGTT
1 ATGTT
71069033 CAACTTCTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35
Consensus pattern (16 bp):
ATGTTTTAGGAAACCC
Found at i:71070073 original size:54 final size:56
Alignment explanation
Indices: 71070013--71070132 Score: 172
Period size: 55 Copynumber: 2.1 Consensus size: 56
71070003 GCCCAATCTT
*
71070013 ATTCATATGGCCCACTAGGCCC-AATCTCATTCATACGGCCCATTAGG-AAATCAC
1 ATTCATATGGCCCACTAGGCCCAAATCACATTCATACGGCCCATTAGGCAAATCAC
* * *
71070067 ATTCATATGGCCTATTAGGCCCAAATCACATTCATATGGCCCATTAGGCCCAAATCAC
1 ATTCATATGGCCCACTAGGCCCAAATCACATTCATACGGCCCATTAGG--CAAATCAC
71070125 ATTCATAT
1 ATTCATAT
71070133 TCATGCTTTC
Statistics
Matches: 58, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
54 20 0.34
55 23 0.40
58 15 0.26
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (56 bp):
ATTCATATGGCCCACTAGGCCCAAATCACATTCATACGGCCCATTAGGCAAATCAC
Found at i:71070099 original size:29 final size:29
Alignment explanation
Indices: 71069983--71070132 Score: 193
Period size: 29 Copynumber: 5.3 Consensus size: 29
71069973 AAGTCTACAT
* *
71069983 ACATGCATATGGCTCATTAGGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
** *
71070011 TTATTCATATGGCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* *
71070039 TCATTCATACGGCCCATTAGG---AAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
71070065 ACATTCATATGGCCTATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
71070094 ACATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
71070123 ACATTCATAT
1 ACATTCATAT
71070133 TCATGCTTTC
Statistics
Matches: 106, Mismatches: 12, Indels: 7
0.85 0.10 0.06
Matches are distributed among these distances:
26 22 0.21
28 41 0.39
29 43 0.41
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:71072377 original size:40 final size:40
Alignment explanation
Indices: 71072307--71072523 Score: 219
Period size: 40 Copynumber: 5.5 Consensus size: 40
71072297 AAGCCAAGTA
* * * *
71072307 CCTTCGGGATTTA-ACCAGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACGAATG
* *
71072346 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
* *
71072386 CCTTCGGGACTTAGCCCGGACATAATAACTCGCACGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
* * * *
71072426 CCTTCGAGAATTAGCCCGGGTATAATAACTCGCAC-AATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAA-TG
* * * *
71072466 CCTTCAGG-CTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACGAATG
*
71072505 CCTTCGAGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
71072524 TTATCATCCG
Statistics
Matches: 149, Mismatches: 23, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
38 1 0.01
39 41 0.28
40 107 0.72
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
Found at i:71072519 original size:79 final size:80
Alignment explanation
Indices: 71072342--71072523 Score: 235
Period size: 79 Copynumber: 2.3 Consensus size: 80
71072332 TACTCGCTCG
* * * *
71072342 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGCCCGGAC
1 AATGCCTTCGAGACTTAGCCCGGATATAATAACTCGCACCAATGCCTTCAGGACTTAGCCCGGAC
* *
71072407 ATAATAACTCGCACG
66 ATAATAACTAGCACA
* *
71072422 AATGCCTTCGAGAATTAGCCCGGGTATAATAACTCGCA-CAATTGCCTTCAGG-CTTAGCCCGGA
1 AATGCCTTCGAGACTTAGCCCGGATATAATAACTCGCACCAA-TGCCTTCAGGACTTAGCCCGGA
* *
71072485 -ATTAGTCACTAGCACA
65 CA-TAATAACTAGCACA
71072501 AATGCCTTCGAGACTTAGCCCGG
1 AATGCCTTCGAGACTTAGCCCGG
71072524 TTATCATCCG
Statistics
Matches: 89, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
78 1 0.01
79 46 0.52
80 42 0.47
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (80 bp):
AATGCCTTCGAGACTTAGCCCGGATATAATAACTCGCACCAATGCCTTCAGGACTTAGCCCGGAC
ATAATAACTAGCACA
Found at i:71076722 original size:17 final size:18
Alignment explanation
Indices: 71076700--71076733 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
71076690 CACATTGAAG
71076700 TGTTTT-AGTGAAAACCT
1 TGTTTTCAGTGAAAACCT
*
71076717 TGTTTTCATTGAAAACC
1 TGTTTTCAGTGAAAACC
71076734 CTTCCTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.41
Consensus pattern (18 bp):
TGTTTTCAGTGAAAACCT
Found at i:71077873 original size:29 final size:29
Alignment explanation
Indices: 71077812--71077987 Score: 230
Period size: 29 Copynumber: 6.1 Consensus size: 29
71077802 ACATACATGT
* **
71077812 ATATGGCCCACTAGGCCC-AATCTTATTC
1 ATATGGCCCATTAGGCCCAAATCACATTC
*
71077840 GTATGGCCCATTAGGCCCAAATCACATTC
1 ATATGGCCCATTAGGCCCAAATCACATTC
* * * *
71077869 ATATGACCCACTAGTCCC-AATCTCATTC
1 ATATGGCCCATTAGGCCCAAATCACATTC
* * *
71077897 ATATGACCCATTTGGCCTAAATCACATTC
1 ATATGGCCCATTAGGCCCAAATCACATTC
*
71077926 GTATGGCCCATTAGGCCCAAATCACATTC
1 ATATGGCCCATTAGGCCCAAATCACATTC
71077955 ATATGGCCCATTAGGCCCAAATCACATTC
1 ATATGGCCCATTAGGCCCAAATCACATTC
71077984 ATAT
1 ATAT
71077988 TCATGCTTTC
Statistics
Matches: 127, Mismatches: 19, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
28 39 0.31
29 88 0.69
ACGTcount: A:0.29, C:0.31, G:0.13, T:0.27
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACATTC
Found at i:71077873 original size:57 final size:57
Alignment explanation
Indices: 71077812--71077987 Score: 253
Period size: 57 Copynumber: 3.1 Consensus size: 57
71077802 ACATACATGT
* *
71077812 ATATGGCCCACTAGGCCCAATCTTATTCGTATGGCCCATTAGGCCCAAATCACATTC
1 ATATGGCCCACTAGGCCCAATCTCATTCATATGGCCCATTAGGCCCAAATCACATTC
* * * * *
71077869 ATATGACCCACTAGTCCCAATCTCATTCATATGACCCATTTGGCCTAAATCACATTC
1 ATATGGCCCACTAGGCCCAATCTCATTCATATGGCCCATTAGGCCCAAATCACATTC
* * *
71077926 GTATGGCCCATTAGGCCCAAATCACATTCATATGGCCCATTAGGCCCAAATCACATTC
1 ATATGGCCCACTAGGCCC-AATCTCATTCATATGGCCCATTAGGCCCAAATCACATTC
71077984 ATAT
1 ATAT
71077988 TCATGCTTTC
Statistics
Matches: 102, Mismatches: 16, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
57 64 0.63
58 38 0.37
ACGTcount: A:0.29, C:0.31, G:0.13, T:0.27
Consensus pattern (57 bp):
ATATGGCCCACTAGGCCCAATCTCATTCATATGGCCCATTAGGCCCAAATCACATTC
Found at i:71083177 original size:37 final size:37
Alignment explanation
Indices: 71083122--71083267 Score: 247
Period size: 37 Copynumber: 3.9 Consensus size: 37
71083112 AGCTCAGACG
*
71083122 AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
71083159 AAATCTCCACACGTAGTCATTGGGTCTTACCCGTACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
71083196 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
71083233 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
71083268 ATATATTTCC
Statistics
Matches: 103, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 103 1.00
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:71083539 original size:48 final size:48
Alignment explanation
Indices: 71083413--71083597 Score: 282
Period size: 48 Copynumber: 3.8 Consensus size: 48
71083403 GCACATCGCC
*
71083413 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * *
71083463 TATATATTTCACATT-GACCATTCAGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
*
71083511 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATTTCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
71083559 TACATTTTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
71083598 TGCATGTTCA
Statistics
Matches: 124, Mismatches: 9, Indels: 6
0.89 0.06 0.04
Matches are distributed among these distances:
48 81 0.65
49 2 0.02
50 41 0.33
ACGTcount: A:0.30, C:0.26, G:0.06, T:0.37
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:71083602 original size:98 final size:98
Alignment explanation
Indices: 71083413--71083596 Score: 302
Period size: 98 Copynumber: 1.9 Consensus size: 98
71083403 GCACATCGCC
*
71083413 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATATTTCACATT
71083478 GACCATTCAGCTTTACCACATATGCATATCTCA
66 GACCATTCAGCTTTACCACATATGCATATCTCA
* *
71083511 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATTTCTCATACAT-T-TTTCACATT
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATATTTCACATT
*
71083574 -AGCCATTCGGCTTTACCACATAT
66 GA-CCATTCAGCTTTACCACATAT
71083597 ATGCATGTTC
Statistics
Matches: 81, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
95 1 0.01
96 29 0.36
97 1 0.01
98 50 0.62
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.37
Consensus pattern (98 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATATTTCACATT
GACCATTCAGCTTTACCACATATGCATATCTCA
Found at i:71083646 original size:47 final size:46
Alignment explanation
Indices: 71083575--71083738 Score: 231
Period size: 47 Copynumber: 3.5 Consensus size: 46
71083565 TTTCACATTA
* * * *
71083575 GCCATTCGGCTTTACCACATATATGCATGTTCATATTCACCAAATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATC-AATTG
* * *
71083622 GCCATTCGGCCTTATCACACATATGCGTGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA-ATTG
71083669 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATC-ATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCAATTG
*
71083714 GCCATTCGGCCTTATCTCATATATG
1 GCCATTCGGCCTTATCACATATATG
71083739 TACATTCACG
Statistics
Matches: 105, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
45 28 0.27
46 1 0.01
47 76 0.72
ACGTcount: A:0.24, C:0.28, G:0.14, T:0.34
Consensus pattern (46 bp):
GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCAATTG
Found at i:71083676 original size:94 final size:92
Alignment explanation
Indices: 71083567--71083738 Score: 263
Period size: 94 Copynumber: 1.8 Consensus size: 92
71083557 CATACATTTT
* *
71083567 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCACCAAATTGGCCATTCGGC
1 TCACATTAGCCATTCGGCCTTACCACATATATGCATGTTCACATTCACC--ATTGGCCATTCGGC
71083632 CTTATCACACATATGCGTGCTCACATTCA
64 CTTATCACACATATGCGTGCTCACATTCA
* * *
71083661 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCATTGGCCATTCGGCCT
1 TCACATTAGCCATTCGGCCTTACCACATATATGCATGTTCACATTCACCATTGGCCATTCGGCCT
* *
71083726 TATCTCATATATG
66 TATCACACATATG
71083739 TACATTCACG
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 27 0.38
94 44 0.62
ACGTcount: A:0.25, C:0.28, G:0.13, T:0.34
Consensus pattern (92 bp):
TCACATTAGCCATTCGGCCTTACCACATATATGCATGTTCACATTCACCATTGGCCATTCGGCCT
TATCACACATATGCGTGCTCACATTCA
Found at i:71094911 original size:81 final size:81
Alignment explanation
Indices: 71094787--71094984 Score: 299
Period size: 81 Copynumber: 2.4 Consensus size: 81
71094777 TACTGAAATG
*
71094787 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTCGATTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTA
* * **
71094852 TAGAATTATTGTTTCA
66 CAAAATTATCATTTCA
*
71094868 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTA
*
71094933 CAAAATTATCATTTTA
66 CAAAATTATCATTTCA
* *
71094949 CCCTC-AGTTTACAAAATTACCATTTTACCCTCGATT
1 CCCTCGA-TTTATAGAATTACCATTTTACCCTCGATT
71094985 GTGAAATTAC
Statistics
Matches: 107, Mismatches: 9, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
80 1 0.01
81 106 0.99
ACGTcount: A:0.28, C:0.24, G:0.08, T:0.39
Consensus pattern (81 bp):
CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTA
CAAAATTATCATTTCA
Found at i:71094933 original size:27 final size:27
Alignment explanation
Indices: 71094787--71094984 Score: 263
Period size: 27 Copynumber: 7.3 Consensus size: 27
71094777 TACTGAAATG
71094787 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* *
71094814 CCCTCGATTTATAGAATTACCGTTTCA
1 CCCTCGATTTATAGAATTACCATTTTA
*** *
71094841 CCCTCGATTTATAGAATTATTGTTTCA
1 CCCTCGATTTATAGAATTACCATTTTA
71094868 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* *
71094895 CCCTCGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* * *
71094922 CCCTCGATTTACAAAATTATCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* *
71094949 CCCTC-AGTTTACAAAATTACCATTTTA
1 CCCTCGA-TTTATAGAATTACCATTTTA
71094976 CCCTCGATT
1 CCCTCGATT
71094985 GTGAAATTAC
Statistics
Matches: 155, Mismatches: 14, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
26 1 0.01
27 153 0.99
28 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.08, T:0.39
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCATTTTA
Done.