Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 207 of 295
Found at i:71095144 original size:27 final size:27
Alignment explanation
Indices: 71094983--71095154 Score: 161
Period size: 27 Copynumber: 6.4 Consensus size: 27
71094973 TTACCCTCGA
* *
71094983 TTGTGAAATTACTAAAATACCCCT-A-
1 TTGTAAAATTACCAAAATACCCCTAAT
* *
71095008 TTGATAGAATTACCAAAATACCCCTAGT
1 TTG-TAAAATTACCAAAATACCCCTAAT
*
71095036 TTGTAAAATTACCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCCTAAT
* ** **
71095063 TTGTAAAATTACCGAAATACGACTGGT
1 TTGTAAAATTACCAAAATACCCCTAAT
* * *
71095090 TTGTGAAATTATCGAAATA-CCCTCAAT
1 TTGTAAAATTACCAAAATACCCCT-AAT
*
71095117 TGGTAAAATTACCAAAATACCCCTAAT
1 TTGTAAAATTACCAAAATACCCCTAAT
**
71095144 TTACAAAATTA
1 TTGTAAAATTA
71095155 TAGAAATACC
Statistics
Matches: 120, Mismatches: 22, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
25 3 0.03
26 20 0.17
27 90 0.75
28 7 0.06
ACGTcount: A:0.41, C:0.19, G:0.10, T:0.30
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCCTAAT
Found at i:71095161 original size:27 final size:27
Alignment explanation
Indices: 71095095--71095223 Score: 93
Period size: 27 Copynumber: 4.7 Consensus size: 27
71095085 CTGGTTTGTG
* * ***
71095095 AAATTATCGAAATACCCTCAATTGGTA
1 AAATTATAGAAATACCCTTAATTTACA
* *
71095122 AAATTACCA-AAATACCCCTAATTTACA
1 AAATTA-TAGAAATACCCTTAATTTACA
*
71095149 AAATTATAGAAATACCCTTGACTTT-CTAA
1 AAATTATAGAAATACCCTT-AATTTAC--A
* **
71095178 AAATTATAGAAATACCATTGGTTTACA
1 AAATTATAGAAATACCCTTAATTTACA
71095205 AAATTACTA-AAATACCCTT
1 AAATTA-TAGAAATACCCTT
71095224 GGTTTGTAGA
Statistics
Matches: 81, Mismatches: 14, Indels: 14
0.74 0.13 0.13
Matches are distributed among these distances:
26 1 0.01
27 51 0.63
28 9 0.11
29 20 0.25
ACGTcount: A:0.44, C:0.19, G:0.06, T:0.31
Consensus pattern (27 bp):
AAATTATAGAAATACCCTTAATTTACA
Found at i:71095225 original size:27 final size:27
Alignment explanation
Indices: 71095143--71095228 Score: 104
Period size: 27 Copynumber: 3.1 Consensus size: 27
71095133 ATACCCCTAA
*
71095143 TTTACAAAATTATAGAAATACCCTTGAC
1 TTTACAAAATTATAGAAATACCCTTG-G
*
71095171 TTT-CTAAAAATTATAGAAATACCATTGG
1 TTTAC--AAAATTATAGAAATACCCTTGG
71095199 TTTACAAAATTACTA-AAATACCCTTGG
1 TTTACAAAATTA-TAGAAATACCCTTGG
71095226 TTT
1 TTT
71095229 GTAGATTTAC
Statistics
Matches: 51, Mismatches: 3, Indels: 9
0.81 0.05 0.14
Matches are distributed among these distances:
27 22 0.43
28 8 0.16
29 21 0.41
ACGTcount: A:0.41, C:0.15, G:0.08, T:0.36
Consensus pattern (27 bp):
TTTACAAAATTATAGAAATACCCTTGG
Found at i:71095346 original size:27 final size:27
Alignment explanation
Indices: 71095282--71095346 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
71095272 ACCTCTAATA
*
71095282 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* * *
71095309 GGTAAAGTGACCGTAATA-CCCTTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
71095336 GGTAAAATGAC
1 GGTAAAATGAC
71095347 GAATATGCCC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:71096190 original size:25 final size:25
Alignment explanation
Indices: 71096157--71096226 Score: 97
Period size: 25 Copynumber: 2.8 Consensus size: 25
71096147 AGGAAGTGCT
*
71096157 GAAAGGGCTCTGCCCCAGTTTACC-
1 GAAAGGGCTTTGCCCCAGTTTACCA
*
71096181 GAAAAGGGCTTTGCCCCAGTTTATCA
1 G-AAAGGGCTTTGCCCCAGTTTACCA
*
71096207 GAAAGGGCTTTGCCCTAGTT
1 GAAAGGGCTTTGCCCCAGTT
71096227 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
24 1 0.02
25 39 0.95
26 1 0.02
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.26
Consensus pattern (25 bp):
GAAAGGGCTTTGCCCCAGTTTACCA
Found at i:71096239 original size:24 final size:23
Alignment explanation
Indices: 71096158--71096253 Score: 75
Period size: 25 Copynumber: 3.9 Consensus size: 23
71096148 GGAAGTGCTG
* * *
71096158 AAAGGGCTCTGCCCCAGTTTACCGA
1 AAAGGGCTTTGCCCTAG-TTATC-A
*
71096183 AAAGGGCTTTGCCCCAGTTTATCA
1 AAAGGGCTTTGCCCTAG-TTATCA
*
71096207 GAAAGGGCTTTGCCCTAGTTATTA
1 -AAAGGGCTTTGCCCTAGTTATCA
**
71096231 AAAGAGGCTAGGCCTCTAGTTAT
1 AAAG-GGCTTTGCC-CTAGTTAT
71096254 ATGATAAAGC
Statistics
Matches: 62, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
23 4 0.06
24 13 0.21
25 45 0.73
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (23 bp):
AAAGGGCTTTGCCCTAGTTATCA
Found at i:71096433 original size:42 final size:42
Alignment explanation
Indices: 71096374--71096465 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
71096364 TAGTCTCCCC
* *
71096374 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTAACATTACATGTGATATTG
71096416 AAATGGGCTTGCATACATCCATTAACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTAACATTACATGTGATATTG
71096458 AAATGGGC
1 AAATGGGC
71096466 CTAAAGGCCA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.33
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTAACATTACATGTGATATTG
Found at i:71097725 original size:27 final size:27
Alignment explanation
Indices: 71097694--71097757 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 27
71097684 GCAAAGCTGG
71097694 CAGTAACAGTAAATGTGGCAAAGCCAC
1 CAGTAACAGTAAATGTGGCAAAGCCAC
* ** *
71097721 TAGTAACAGTAGTTGTGGCAGAGCCAC
1 CAGTAACAGTAAATGTGGCAAAGCCAC
71097748 CAGT-ACAGTA
1 CAGTAACAGTA
71097758 CTTCCTCCGA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 6 0.19
27 26 0.81
ACGTcount: A:0.36, C:0.20, G:0.25, T:0.19
Consensus pattern (27 bp):
CAGTAACAGTAAATGTGGCAAAGCCAC
Found at i:71123791 original size:27 final size:28
Alignment explanation
Indices: 71123707--71123804 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
71123697 CATGAGATTG
* * * *
71123707 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
71123736 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
71123764 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
71123791 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
71123805 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:71123815 original size:27 final size:27
Alignment explanation
Indices: 71123735--71123817 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
71123725 TAAATTGTAC
* *
71123735 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
71123763 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
71123790 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
71123817 A
1 A
71123818 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:71123818 original size:29 final size:27
Alignment explanation
Indices: 71123707--71123818 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
71123697 CATGAGATTG
** * *
71123707 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
71123736 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
71123764 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
71123791 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
71123819 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:71131948 original size:27 final size:28
Alignment explanation
Indices: 71131864--71131961 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
71131854 CATGAGATTG
* * * *
71131864 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
71131893 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
71131921 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
71131948 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
71131962 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:71131972 original size:27 final size:27
Alignment explanation
Indices: 71131892--71131974 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
71131882 TAAATTGTAC
* *
71131892 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
71131920 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
71131947 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
71131974 A
1 A
71131975 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:71131975 original size:29 final size:27
Alignment explanation
Indices: 71131864--71131975 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
71131854 CATGAGATTG
** * *
71131864 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
71131893 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
71131921 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
71131948 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
71131976 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:71135007 original size:30 final size:30
Alignment explanation
Indices: 71134973--71135057 Score: 152
Period size: 30 Copynumber: 2.8 Consensus size: 30
71134963 TTTCGAGCAA
*
71134973 AGGGGTAAAATGGTCATTTTGCCAAGTTCT
1 AGGGGCAAAATGGTCATTTTGCCAAGTTCT
71135003 AGGGGCAAAATGGTCATTTTGCCAAGTTCT
1 AGGGGCAAAATGGTCATTTTGCCAAGTTCT
*
71135033 AGGGGCAAAATGGTCATTTTACCAA
1 AGGGGCAAAATGGTCATTTTGCCAA
71135058 AGTTGTGAAT
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 53 1.00
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.29
Consensus pattern (30 bp):
AGGGGCAAAATGGTCATTTTGCCAAGTTCT
Found at i:71135472 original size:47 final size:47
Alignment explanation
Indices: 71135399--71135712 Score: 178
Period size: 47 Copynumber: 6.7 Consensus size: 47
71135389 TGATTTGTGC
* * * * *
71135399 GCCAGTGTAAGTCTATATCTGGGACATGGTATCAGCATCTAGACGAGG
1 GCCAGTGTAAGAC-ATGTCTGGGACATGGCATCAGCATCTAGATGAGA
* * *
71135447 GCTAGTGTAAGACATGTCTGGGACAT-GCATCAGCCATAT-TATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGGCATCAG-CATCTAGATGAGA
* * * *
71135493 GCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCA-CAGAGATGAGT
1 GCCAGTGTAAGA-CATGTCTGGGACATGGCATCAGCATC-TAGATGAGA
* * * * * * * *
71135541 GCCAGAGTAAGACATGTCTTGGACAT-GCATCGGCCTCGACAAAGATA
1 GCCAGTGTAAGACATGTCTGGGACATGGCATCAGCATCTA-GATGAGA
* ** * * *
71135588 GCCAGTGTAAGACATGTCTGGGACA-CGCATTGGC-T-AAGA-GTTGT
1 GCCAGTGTAAGACATGTCTGGGACATGGCATCAGCATCTAGATG-AGA
* * * * *
71135632 GCTAGTGTAAGACATGTCTGGGATAT-GCATCAGTATGCACATATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGGCATCAGCAT-C-TAGATGAGA
* * *
71135680 GCCAGTTTAAGACCATGTTTGGGGCATGGCATC
1 GCCAGTGTAAGA-CATGTCTGGGACATGGCATC
71135713 GACAATTTAT
Statistics
Matches: 205, Mismatches: 44, Indels: 32
0.73 0.16 0.11
Matches are distributed among these distances:
43 1 0.00
44 29 0.14
45 2 0.01
46 32 0.16
47 78 0.38
48 46 0.22
49 12 0.06
50 5 0.02
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (47 bp):
GCCAGTGTAAGACATGTCTGGGACATGGCATCAGCATCTAGATGAGA
Found at i:71135553 original size:94 final size:93
Alignment explanation
Indices: 71135453--71135713 Score: 266
Period size: 94 Copynumber: 2.8 Consensus size: 93
71135443 GAGGGCTAGT
* *
71135453 GTAAGACATGTCTGGGACATGCATCAGCCAT-ATTATGAGAGCCAGTGTAAGACCATGTCTAGGA
1 GTAAGACATGTCTGGGACATGCATCAGCCATCAATATGAGAGCCAGTGTAAGACCATGTCTGGGA
71135517 CATGGCATCGGC-ACAGAGATGAGTGCCAGA
66 CATGGCATCGGCTA-AGAG-T-AGTGCCAGA
* * * *
71135547 GTAAGACATGTCTTGGACATGCATCGGCC-TCGACA-AAGATAGCCAGTGTAAGA-CATGTCTGG
1 GTAAGACATGTCTGGGACATGCATCAGCCATC-A-ATATGAGAGCCAGTGTAAGACCATGTCTGG
* * * * *
71135609 GACA-CGCATTGGCTAAGAGTTGTGCTAGT
64 GACATGGCATCGGCTAAGAGTAGTGCCAGA
* * * *
71135638 GTAAGACATGTCTGGGATATGCATCAG-TATGCACATATGAGAGCCAGTTTAAGACCATGTTTGG
1 GTAAGACATGTCTGGGACATGCATCAGCCAT-CA-ATATGAGAGCCAGTGTAAGACCATGTCTGG
*
71135702 GGCATGGCATCG
64 GACATGGCATCG
71135714 ACAATTTATC
Statistics
Matches: 136, Mismatches: 22, Indels: 18
0.77 0.12 0.10
Matches are distributed among these distances:
91 34 0.25
92 17 0.12
93 23 0.17
94 45 0.33
95 17 0.12
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (93 bp):
GTAAGACATGTCTGGGACATGCATCAGCCATCAATATGAGAGCCAGTGTAAGACCATGTCTGGGA
CATGGCATCGGCTAAGAGTAGTGCCAGA
Found at i:71143929 original size:28 final size:28
Alignment explanation
Indices: 71143898--71143971 Score: 114
Period size: 28 Copynumber: 2.6 Consensus size: 28
71143888 GTTCAAATTG
* *
71143898 TATAGCACTAAGTGTGCGAGTTTGATTA
1 TATAGCACTAAGTGTGCGAGTTCGACTA
71143926 TATAGCACTAAGTGTGCGAGTTCGACTA
1 TATAGCACTAAGTGTGCGAGTTCGACTA
71143954 T-TAAGCACTAAGTGTGCG
1 TAT-AGCACTAAGTGTGCG
71143972 GGCTTATTAT
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
27 1 0.02
28 42 0.98
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (28 bp):
TATAGCACTAAGTGTGCGAGTTCGACTA
Found at i:71151932 original size:28 final size:28
Alignment explanation
Indices: 71151864--71151962 Score: 110
Period size: 28 Copynumber: 3.5 Consensus size: 28
71151854 CATGAGATTG
* * * *
71151864 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTTC-GACTATATA
* *
71151893 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTCGACTATATA
*
71151921 GCACTAATTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTCGACTATAT-A
71151949 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
71151963 GGCTTATTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.70
29 17 0.28
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTCGACTATATA
Found at i:71155084 original size:21 final size:20
Alignment explanation
Indices: 71155052--71155094 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
71155042 ATATCCAAAC
71155052 AATCCAAATTTTACAAAAACTT
1 AATCCAAATTTTA-AAAAA-TT
71155074 AATCC-AATTTTAAAAAATT
1 AATCCAAATTTTAAAAAATT
71155093 AA
1 AA
71155095 AGAAACACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 4 0.19
20 5 0.24
21 7 0.33
22 5 0.24
ACGTcount: A:0.53, C:0.14, G:0.00, T:0.33
Consensus pattern (20 bp):
AATCCAAATTTTAAAAAATT
Found at i:71156341 original size:17 final size:18
Alignment explanation
Indices: 71156319--71156352 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
71156309 CAATTTGGGC
71156319 CGTGTTCGCC-ACACGGA
1 CGTGTTCGCCTACACGGA
*
71156336 CGTGTTGGCCTACACGG
1 CGTGTTCGCCTACACGG
71156353 GTGTGTGGGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.15, C:0.32, G:0.32, T:0.21
Consensus pattern (18 bp):
CGTGTTCGCCTACACGGA
Found at i:71157663 original size:25 final size:25
Alignment explanation
Indices: 71157607--71157664 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 25
71157597 CTGTTTATAA
* *
71157607 ACTGAAAATGCTATAGATAGTATGT
1 ACTGAAAATACTATAGATAGGATGT
* *
71157632 A-TCGAAACTACTATAGATAGGCTGT
1 ACT-GAAAATACTATAGATAGGATGT
71157657 ACTGAAAA
1 ACTGAAAA
71157665 CACGTAAGTT
Statistics
Matches: 26, Mismatches: 5, Indels: 4
0.74 0.14 0.11
Matches are distributed among these distances:
24 1 0.04
25 24 0.92
26 1 0.04
ACGTcount: A:0.41, C:0.12, G:0.19, T:0.28
Consensus pattern (25 bp):
ACTGAAAATACTATAGATAGGATGT
Found at i:71161146 original size:50 final size:50
Alignment explanation
Indices: 71161092--71161328 Score: 269
Period size: 50 Copynumber: 4.7 Consensus size: 50
71161082 CTGGTAAGCA
* *
71161092 TAGTAGCCTGCACTTAGTACTACACATGCGACTTAACAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCTGGTACACG
* * *
71161142 TAGTAGCTTGCACTTAGTACTACACACGTGACCTAACCATC-GGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCTGG-TACACG
* * ** * * * * * *
71161192 TAGTAGCCTGTACTTAGTGCTACACACATGATCGAAGCTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAA-CAATCTGGTACACG
* *
71161243 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCTGGTACACG
* **
71161293 TAGTAGCCTGCGCTTAGTACTACACACATGACCTAA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAA
71161329 AACCATTTTA
Statistics
Matches: 154, Mismatches: 30, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
49 2 0.01
50 113 0.73
51 37 0.24
52 2 0.01
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCTGGTACACG
Found at i:71161252 original size:51 final size:50
Alignment explanation
Indices: 71161090--71161370 Score: 208
Period size: 50 Copynumber: 5.6 Consensus size: 50
71161080 CTCTGGTAAG
*** ** *
71161090 CATAGTAGCCTGCACTTAGTACTACACATGCGACTTAACAATCTGG-TACA
1 CATAGTAGCCTGCACTTAGTACTACACACATGACCGAACCATC-GGATACA
* * * *
71161140 CGTAGTAGCTTGCACTTAGTACTACACACGTGACCTAACCATCGGATACA
1 CATAGTAGCCTGCACTTAGTACTACACACATGACCGAACCATCGGATACA
* * * * * * *
71161190 CGTAGTAGCCTGTACTTAGTGCTACACACATGATCGAAGCTATCGGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACACATGACCGAA-CCATCGGATACA
*** * *
71161241 CATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGG-TACA
1 CATAGTAGCCTGCACTTAGTACTACACACATGACCGAACCATC-GGATACA
** * * *** *
71161291 TGTAGTAGCCTGCGCTTAGTACTACACACATGACCTAAAACCATTTTAAACA
1 CATAGTAGCCTGCACTTAGTACTACACACATGACC--GAACCATCGGATACA
*
71161343 CATAGTAGCCTGCATATTA-TACTACACA
1 CATAGTAGCCTGCA-CTTAGTACTACACA
71161371 TGTGTTCTCA
Statistics
Matches: 183, Mismatches: 41, Indels: 12
0.78 0.17 0.05
Matches are distributed among these distances:
49 2 0.01
50 109 0.60
51 41 0.22
52 28 0.15
53 3 0.02
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (50 bp):
CATAGTAGCCTGCACTTAGTACTACACACATGACCGAACCATCGGATACA
Found at i:71161266 original size:101 final size:101
Alignment explanation
Indices: 71161092--71161323 Score: 281
Period size: 101 Copynumber: 2.3 Consensus size: 101
71161082 CTGGTAAGCA
*** * * * * * *
71161092 TAGTAGCCTGCACTTAGTACTACACATGCGA-CTTAA-CAATCTGGTACACGTAGTAGCTTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACATGATC-GAAGCTATCGGGTACGCATAGTAGCCTGCAC
* *
71161155 TTAGTACTACACACGTGACCTAACCATC-GGATACACG
65 TTAGTACTACACACGCGACCTAACAATCTGG-TACACG
* *
71161192 TAGTAGCCTGTACTTAGTGCTACACACATGATCGAAGCTATCGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACATGATCGAAGCTATCGGGTACGCATAGTAGCCTGCACT
* *
71161257 TAGTACTACACATGCGACCTAACAATCTGGTACATG
66 TAGTACTACACACGCGACCTAACAATCTGGTACACG
*
71161293 TAGTAGCCTGCGCTTAGTACTACACACATGA
1 TAGTAGCCTGCACTTAGTACTACACACATGA
71161324 CCTAAAACCA
Statistics
Matches: 111, Mismatches: 18, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
100 28 0.25
101 81 0.73
102 2 0.02
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.25
Consensus pattern (101 bp):
TAGTAGCCTGCACTTAGTACTACACACATGATCGAAGCTATCGGGTACGCATAGTAGCCTGCACT
TAGTACTACACACGCGACCTAACAATCTGGTACACG
Found at i:71161372 original size:151 final size:150
Alignment explanation
Indices: 71161075--71161354 Score: 407
Period size: 151 Copynumber: 1.8 Consensus size: 150
71161065 CTTGTAACCA
* * *
71161075 AAGCTCTCTGGTAAGCATAGTAGCCTGCACTTAGTACTACACATGCGACTTAACAATCTGGTACA
1 AAGCTATCGGGTAAGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACA
* * * *
71161140 CGTAGTAGCTTGCACTTAGTACTACACACGTGACCTAACCATCGGATACACGTAGTAGCCTGTAC
66 CGTAGTAGCCTGCACTTAGTACTACACACATGACCTAACCATCGGAAACACATAGTAGCCTGTAC
*
71161205 TTAGTGCTACACACATGATCG
131 TTAGTACTA-ACACATGATCG
*
71161226 AAGCTATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACA
1 AAGCTATCGGGTAAGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACA
* * ***
71161291 TGTAGTAGCCTGCGCTTAGTACTACACACATGACCTAAAACCATTTTAAACACATAGTAGCCTG
66 CGTAGTAGCCTGCACTTAGTACTACACACATGACCT--AACCATCGGAAACACATAGTAGCCTG
71161355 CATATTATAC
Statistics
Matches: 114, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
151 93 0.82
153 21 0.18
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (150 bp):
AAGCTATCGGGTAAGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACA
CGTAGTAGCCTGCACTTAGTACTACACACATGACCTAACCATCGGAAACACATAGTAGCCTGTAC
TTAGTACTAACACATGATCG
Found at i:71166016 original size:53 final size:53
Alignment explanation
Indices: 71165931--71166035 Score: 138
Period size: 53 Copynumber: 2.0 Consensus size: 53
71165921 GTACCTTTTA
* * * * *
71165931 AACTTACCATTGCCATGTCTTGACGTGGTCTTACGTGGTATCCTTGCCTTATG
1 AACTCACCATTGCCATGCCTTGACCTGGTCTTACATGGGATCCTTGCCTTATG
* * *
71165984 AACTCACCATTGCCATGCCTTGGCCTGGTCTTATATGGGATCTTTGCCTTAT
1 AACTCACCATTGCCATGCCTTGACCTGGTCTTACATGGGATCCTTGCCTTAT
71166036 AGTAGTTTAT
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
53 44 1.00
ACGTcount: A:0.17, C:0.26, G:0.20, T:0.37
Consensus pattern (53 bp):
AACTCACCATTGCCATGCCTTGACCTGGTCTTACATGGGATCCTTGCCTTATG
Found at i:71166157 original size:54 final size:54
Alignment explanation
Indices: 71166054--71166157 Score: 181
Period size: 54 Copynumber: 1.9 Consensus size: 54
71166044 ATCAATGTCA
*
71166054 TGTAGAACTTACCAATGGCATGCTTTGGCATGGTCTTACATGATTTCCTTGCCT
1 TGTAGAACTTACCAATGGCATGCTTTGGCATGGTCTTACATGATATCCTTGCCT
* *
71166108 TGTAGAACTTACCAATGGCATGCTTTGGCATGGTCTTACTTGGTATCCTT
1 TGTAGAACTTACCAATGGCATGCTTTGGCATGGTCTTACATGATATCCTT
71166158 AAACCCTAAT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 47 1.00
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.38
Consensus pattern (54 bp):
TGTAGAACTTACCAATGGCATGCTTTGGCATGGTCTTACATGATATCCTTGCCT
Found at i:71174454 original size:48 final size:48
Alignment explanation
Indices: 71174394--71174516 Score: 183
Period size: 48 Copynumber: 2.6 Consensus size: 48
71174384 CCCGTATAAC
* * **
71174394 ACCATGTTTGGGACATGACATCGGCATTGTTATGTGAGCCAGTGTAAG
1 ACCATGTCTGGGACATGGCATCGGCATCATTATGTGAGCCAGTGTAAG
*
71174442 ACCATGTCTGGGACATGGCATCAGCATCATTATGTGAGCCAGTGTAAG
1 ACCATGTCTGGGACATGGCATCGGCATCATTATGTGAGCCAGTGTAAG
* *
71174490 ACTATGTCTGGGACATGGCATTGGCAT
1 ACCATGTCTGGGACATGGCATCGGCAT
71174517 GAGGCATCAT
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 67 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (48 bp):
ACCATGTCTGGGACATGGCATCGGCATCATTATGTGAGCCAGTGTAAG
Found at i:71176429 original size:13 final size:13
Alignment explanation
Indices: 71176411--71176445 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
71176401 ACAGAGAGTT
71176411 ACACGGGTGGAGG
1 ACACGGGTGGAGG
*
71176424 ACACGGATGGAGG
1 ACACGGGTGGAGG
*
71176437 ACACAGGTG
1 ACACGGGTG
71176446 TGTGTGACCA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.29, C:0.17, G:0.46, T:0.09
Consensus pattern (13 bp):
ACACGGGTGGAGG
Found at i:71183068 original size:41 final size:42
Alignment explanation
Indices: 71183001--71183084 Score: 152
Period size: 41 Copynumber: 2.0 Consensus size: 42
71182991 TTCATTTCAG
71183001 TGATTTGATCGTTAGGGGATCTCTGTTGTTGGTGGTAAGTTT
1 TGATTTGATCGTTAGGGGATCTCTGTTGTTGGTGGTAAGTTT
*
71183043 TGATTTGATCGTT-GGGGATCTCTGTTGTTGGTGGTGAGTTT
1 TGATTTGATCGTTAGGGGATCTCTGTTGTTGGTGGTAAGTTT
71183084 T
1 T
71183085 CAAACTTCGC
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
41 28 0.68
42 13 0.32
ACGTcount: A:0.12, C:0.07, G:0.35, T:0.46
Consensus pattern (42 bp):
TGATTTGATCGTTAGGGGATCTCTGTTGTTGGTGGTAAGTTT
Found at i:71183961 original size:24 final size:24
Alignment explanation
Indices: 71183929--71183974 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
71183919 GGATGGGTGG
71183929 TGATGTGAGCTTGCCTACGAACAA
1 TGATGTGAGCTTGCCTACGAACAA
71183953 TGATGTGAGCTTGCCTACGAAC
1 TGATGTGAGCTTGCCTACGAAC
71183975 CAAATGGAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (24 bp):
TGATGTGAGCTTGCCTACGAACAA
Found at i:71186626 original size:15 final size:16
Alignment explanation
Indices: 71186592--71186633 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
71186582 TGAACTTACT
*
71186592 AAAAAAATAAAAATCCC
1 AAAATAATAAAAAT-CC
71186609 AAAATAATAAAAAT-C
1 AAAATAATAAAAATCC
*
71186624 AAACTAATAA
1 AAAATAATAA
71186634 TTATATATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
15 10 0.43
17 13 0.57
ACGTcount: A:0.71, C:0.12, G:0.00, T:0.17
Consensus pattern (16 bp):
AAAATAATAAAAATCC
Found at i:71187061 original size:35 final size:35
Alignment explanation
Indices: 71187022--71187089 Score: 136
Period size: 35 Copynumber: 1.9 Consensus size: 35
71187012 CCAGAGCACT
71187022 TAACCACTGAAGCAGATACATATTTACCTATCACA
1 TAACCACTGAAGCAGATACATATTTACCTATCACA
71187057 TAACCACTGAAGCAGATACATATTTACCTATCA
1 TAACCACTGAAGCAGATACATATTTACCTATCA
71187090 TACAAAATTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.40, C:0.25, G:0.09, T:0.26
Consensus pattern (35 bp):
TAACCACTGAAGCAGATACATATTTACCTATCACA
Found at i:71189909 original size:40 final size:40
Alignment explanation
Indices: 71189817--71190043 Score: 256
Period size: 40 Copynumber: 5.7 Consensus size: 40
71189807 CGTGTACCCA
* * * * * * *
71189817 AGGGGTATCAAAGTACAAACAGGGGTACATATTTCCAAAC
1 AGGGGTACCGAAGTACAAACAGGGGCACGTATGTGCAATC
* * * * * *
71189857 AGGAGTACCGAAGTAAAAATAAGGGCATGTATGTACAATC
1 AGGGGTACCGAAGTACAAACAGGGGCACGTATGTGCAATC
* *
71189897 AGGGGTATCGAAGTACAAACAAGGGCACGTATGTGCAATC
1 AGGGGTACCGAAGTACAAACAGGGGCACGTATGTGCAATC
* * *
71189937 AAGGGCACCGAAGTACAAACAGGGGCACGCATGTGCAATC
1 AGGGGTACCGAAGTACAAACAGGGGCACGTATGTGCAATC
* * *
71189977 AAGGGTACTGAAGTACAAACAGGGGCGCGTATGTGCAATC
1 AGGGGTACCGAAGTACAAACAGGGGCACGTATGTGCAATC
*
71190017 AGGGGTATCGAAGTACAAACAGGGGCA
1 AGGGGTACCGAAGTACAAACAGGGGCA
71190044 TGCAATCAGG
Statistics
Matches: 156, Mismatches: 31, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 156 1.00
ACGTcount: A:0.37, C:0.18, G:0.29, T:0.16
Consensus pattern (40 bp):
AGGGGTACCGAAGTACAAACAGGGGCACGTATGTGCAATC
Found at i:71189914 original size:20 final size:19
Alignment explanation
Indices: 71189889--71190043 Score: 94
Period size: 20 Copynumber: 7.8 Consensus size: 19
71189879 GGGCATGTAT
* *
71189889 GTACAATCAGGGGTATCGAA
1 GTACAAACAGGGGCA-CGAA
* *
71189909 GTACAAACAAGGGCACGTAT
1 GTACAAACAGGGGCACG-AA
* * *
71189929 GTGCAATCAAGGGCACCGAA
1 GTACAAACAGGGGCA-CGAA
*
71189949 GTACAAACAGGGGCACGCAT
1 GTACAAACAGGGGCACG-AA
* * * *
71189969 GTGCAATCAAGGGTACTGAA
1 GTACAAACAGGGGCAC-GAA
* *
71189989 GTACAAACAGGGGCGCGTAT
1 GTACAAACAGGGGCACG-AA
* * *
71190009 GTGCAATCAGGGGTATCGAA
1 GTACAAACAGGGGCA-CGAA
71190029 GTACAAACAGGGGCA
1 GTACAAACAGGGGCA
71190044 TGCAATCAGG
Statistics
Matches: 99, Mismatches: 30, Indels: 12
0.70 0.21 0.09
Matches are distributed among these distances:
19 5 0.05
20 89 0.90
21 5 0.05
ACGTcount: A:0.35, C:0.19, G:0.31, T:0.15
Consensus pattern (19 bp):
GTACAAACAGGGGCACGAA
Found at i:71200008 original size:29 final size:29
Alignment explanation
Indices: 71199974--71200047 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
71199964 TCATCAACCA
*
71199974 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAACT
**
71200003 CGCACACTTAGTGCCATGCATTTCAAGTT
1 CGCACACTTAGTGCCATGCATTTCAAACT
*
71200032 CGCACACCTAGTGCCA
1 CGCACACTTAGTGCCA
71200048 ATCTCACAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 3 0.08
29 37 0.93
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAACT
Found at i:71208097 original size:29 final size:29
Alignment explanation
Indices: 71208063--71208136 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
71208053 TCATCAACCA
*
71208063 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAACT
**
71208092 CGCACACTTAGTGCCATGCATTTCAAGTT
1 CGCACACTTAGTGCCATGCATTTCAAACT
*
71208121 CGCACACCTAGTGCCA
1 CGCACACTTAGTGCCA
71208137 ATCTCACAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 3 0.08
29 37 0.93
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAACT
Found at i:71216235 original size:25 final size:25
Alignment explanation
Indices: 71216189--71216236 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
71216179 TTATAACATG
* * *
71216189 AAAATGACCATTTTGCCTCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
71216214 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
71216237 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:71216303 original size:20 final size:20
Alignment explanation
Indices: 71216280--71216318 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
71216270 TAAACATGGT
71216280 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
71216300 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
71216319 TGTATTCATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:71216448 original size:24 final size:24
Alignment explanation
Indices: 71216369--71216486 Score: 161
Period size: 23 Copynumber: 5.0 Consensus size: 24
71216359 GAGGAAGTGA
*
71216369 AAAAGGGCTTATGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
71216393 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
71216416 -AAAGGGCTTATGCCCCAATTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
71216439 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
71216463 AAAAGAGGC-TAAGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
71216487 ATGATAAAGC
Statistics
Matches: 85, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
23 44 0.52
24 30 0.35
25 11 0.13
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:71216462 original size:47 final size:46
Alignment explanation
Indices: 71216370--71216465 Score: 156
Period size: 47 Copynumber: 2.1 Consensus size: 46
71216360 AGGAAGTGAA
* *
71216370 AAAGGGCTTATGCCCTAGTTATTAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAATTATTAAAGGGCTTATGCCCCAGTTATT
*
71216416 AAAGGGCTTATGCCCCAATTATTAAAAGGGCTTTTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAATTATT-AAAGGGCTTATGCCCCAGTTATT
71216463 AAA
1 AAA
71216466 AGAGGCTAAG
Statistics
Matches: 46, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
46 21 0.46
47 25 0.54
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (46 bp):
AAAGGGCTTATGCCCCAATTATTAAAGGGCTTATGCCCCAGTTATT
Found at i:71216723 original size:32 final size:32
Alignment explanation
Indices: 71216681--71216742 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
71216671 TTACAGTAAA
*
71216681 GGCTTCGGCCCAGTAATATGAAATTTGAAAAG
1 GGCTTCGGCCCAGTAATATGAAATATGAAAAG
* **
71216713 GGCTTTGGCCCAGTGTTATGAAATATGAAA
1 GGCTTCGGCCCAGTAATATGAAATATGAAA
71216743 TATGTAAAGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.32, C:0.15, G:0.26, T:0.27
Consensus pattern (32 bp):
GGCTTCGGCCCAGTAATATGAAATATGAAAAG
Found at i:71219865 original size:40 final size:40
Alignment explanation
Indices: 71219805--71219990 Score: 302
Period size: 40 Copynumber: 4.7 Consensus size: 40
71219795 CAATTGAGGA
*
71219805 TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
71219845 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
71219885 TTA-TTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
* *
71219924 CTATTTCCGGGTTAAGTCCCGAAGGCATTTGTGCTGGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
** * *
71219964 TTACATCCGGGCTAAATCCCGAAGGCA
1 TTATTTCCGGGTTAAGTCCCGAAGGCA
71219991 ATTGGGTTGG
Statistics
Matches: 137, Mismatches: 8, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
39 38 0.28
40 99 0.72
ACGTcount: A:0.18, C:0.22, G:0.29, T:0.32
Consensus pattern (40 bp):
TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
Found at i:71219941 original size:79 final size:79
Alignment explanation
Indices: 71219805--71219990 Score: 309
Period size: 79 Copynumber: 2.3 Consensus size: 79
71219795 CAATTGAGGA
*
71219805 TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGTTATTTCCGGGTTAAGTCCCGAAGG
1 TTAT-TCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGCTATTTCCGGGTTAAGTCCCGAAGG
71219870 CATTCGTGCTGGTTG
65 CATTCGTGCTGGTTG
71219885 TTATTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGCTATTTCCGGGTTAAGTCCCGAAGGC
1 TTATTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGCTATTTCCGGGTTAAGTCCCGAAGGC
*
71219950 ATTTGTGCTGGTTG
66 ATTCGTGCTGGTTG
* * *
71219964 TTACATCCGGGCTAAATCCCGAAGGCA
1 TTA-TTCCGGGTTAAGTCCCGAAGGCA
71219991 ATTGGGTTGG
Statistics
Matches: 100, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
79 76 0.76
80 24 0.24
ACGTcount: A:0.18, C:0.22, G:0.29, T:0.32
Consensus pattern (79 bp):
TTATTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGCTATTTCCGGGTTAAGTCCCGAAGGC
ATTCGTGCTGGTTG
Found at i:71227873 original size:40 final size:40
Alignment explanation
Indices: 71227813--71228039 Score: 346
Period size: 40 Copynumber: 5.7 Consensus size: 40
71227803 CAATTGGGGA
* *
71227813 TTATATCCGGGTTAAGTCCCGAAGGCATTCATGCTGGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
71227853 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
*
71227893 TTATTTTCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
*
71227933 TTATTTCCGGGTTAAGTCCTGAAGGCATTCGTGCTGGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
* * *
71227973 CTATTTCTGGGTTAAGTCCCGAAGGCATTTGTGCTGGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
** * * *
71228013 TTACATCCGAGCTAAATCCCGAAGGCA
1 TTATTTCCGGGTTAAGTCCCGAAGGCA
71228040 ATTGGGTTGG
Statistics
Matches: 171, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 171 1.00
ACGTcount: A:0.18, C:0.20, G:0.28, T:0.34
Consensus pattern (40 bp):
TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
Found at i:71231753 original size:11 final size:11
Alignment explanation
Indices: 71231739--71231779 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
71231729 TATTTTCTCC
71231739 CTATTTTGCTA
1 CTATTTTGCTA
*
71231750 CTATTTTACTA
1 CTATTTTGCTA
* *
71231761 TTATATTGCTA
1 CTATTTTGCTA
71231772 CTATTTTG
1 CTATTTTG
71231780 TTGTTATTGT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.22, C:0.15, G:0.07, T:0.56
Consensus pattern (11 bp):
CTATTTTGCTA
Found at i:71232032 original size:12 final size:12
Alignment explanation
Indices: 71232002--71232034 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
71231992 TATATATTTT
71232002 AAAATT-ATATA
1 AAAATTAATATA
71232013 AAAA-TAATATA
1 AAAATTAATATA
71232024 AAAATTAATAT
1 AAAATTAATAT
71232035 GGGCGGGCCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 13 0.65
12 6 0.30
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:71235457 original size:10 final size:10
Alignment explanation
Indices: 71235444--71235468 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
71235434 AATTTTGTAC
71235444 AGTTAGTTAG
1 AGTTAGTTAG
71235454 AGTTAGTTAG
1 AGTTAGTTAG
71235464 AGTTA
1 AGTTA
71235469 CAAAAGAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.32, C:0.00, G:0.28, T:0.40
Consensus pattern (10 bp):
AGTTAGTTAG
Found at i:71236153 original size:10 final size:11
Alignment explanation
Indices: 71236122--71236146 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
71236112 AACTTGCAGG
71236122 TTTATCCTTGT
1 TTTATCCTTGT
71236133 TTTATCCTTGT
1 TTTATCCTTGT
71236144 TTT
1 TTT
71236147 TCTTTGTGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.08, C:0.16, G:0.08, T:0.68
Consensus pattern (11 bp):
TTTATCCTTGT
Found at i:71239448 original size:13 final size:13
Alignment explanation
Indices: 71239430--71239454 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
71239420 GTAATAAATA
71239430 AAATTTTCTTATC
1 AAATTTTCTTATC
71239443 AAATTTTCTTAT
1 AAATTTTCTTAT
71239455 AACATTCTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.12, G:0.00, T:0.56
Consensus pattern (13 bp):
AAATTTTCTTATC
Found at i:71243082 original size:33 final size:32
Alignment explanation
Indices: 71243010--71243086 Score: 91
Period size: 33 Copynumber: 2.3 Consensus size: 32
71243000 ATGATTGGAT
* * * *
71243010 GTAAGACCATAACTGGGCTATGGTATTTTAAT
1 GTAAGACCATAACTGGGCTATGGCACTTGAAC
*
71243042 GTAAAGACCATAACTGGGTTATGGCACCTTGAAC
1 GT-AAGACCATAACTGGGCTATGGCA-CTTGAAC
71243076 GTAAGACCATA
1 GTAAGACCATA
71243087 GTTGGACCAT
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
32 2 0.05
33 30 0.79
34 6 0.16
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.27
Consensus pattern (32 bp):
GTAAGACCATAACTGGGCTATGGCACTTGAAC
Found at i:71244749 original size:33 final size:33
Alignment explanation
Indices: 71244701--71244764 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
71244691 TATGCAAAAT
* *
71244701 AGTCTGGGCCGTAGCCTTATTCAGTAACAGAAC
1 AGTCTGGGCCGTAGCCCTATACAGTAACAGAAC
** *
71244734 AGTCTGGGCTTTAGCCCTATACAGTAGCAGA
1 AGTCTGGGCCGTAGCCCTATACAGTAACAGA
71244765 GTGGGCCCAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (33 bp):
AGTCTGGGCCGTAGCCCTATACAGTAACAGAAC
Found at i:71245972 original size:27 final size:27
Alignment explanation
Indices: 71245921--71246010 Score: 110
Period size: 27 Copynumber: 3.2 Consensus size: 27
71245911 GTGACAGAGT
71245921 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGTGC
* * *
71245950 CACCAGAATAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGTGC
71245977 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATTTGTGGCAGT-GC
71246005 CACCAG
1 CACCAG
71246011 GACACTTCCT
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
27 23 0.43
28 23 0.43
29 7 0.13
ACGTcount: A:0.32, C:0.22, G:0.24, T:0.21
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGTGC
Found at i:71251623 original size:101 final size:101
Alignment explanation
Indices: 71251446--71251673 Score: 330
Period size: 101 Copynumber: 2.3 Consensus size: 101
71251436 TGAATTGACA
* * * * * *
71251446 GATAAGACGACAACTGGGTTATGGCACTATGAATGTAATACCATGGTTGAACCATGGCAGTGTTT
1 GATAAGACCATAACTGGGTTATGGCACTATGAACGTAAGACCATGGTTGAACCATGACAATGTTT
*
71251511 ATATGTGAGACCATAGCTGAGCTATGGCATTCTAAT
66 ATATGTAAGACCATAGCTGAGCTATGGCATTCTAAT
** * *
71251547 GATAAGGTCATGACTGGGTTATGGCACTATGAACGTAAGACCATGGTTGGACCATGACAATGTTT
1 GATAAGACCATAACTGGGTTATGGCACTATGAACGTAAGACCATGGTTGAACCATGACAATGTTT
* * *
71251612 ATATGTAAGACCATAGCTGGGCTATGGCATTTTGAT
66 ATATGTAAGACCATAGCTGAGCTATGGCATTCTAAT
71251648 GATAAGACCATAACTGGGTTATGGCA
1 GATAAGACCATAACTGGGTTATGGCA
71251674 ATACGAATTT
Statistics
Matches: 110, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
101 110 1.00
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (101 bp):
GATAAGACCATAACTGGGTTATGGCACTATGAACGTAAGACCATGGTTGAACCATGACAATGTTT
ATATGTAAGACCATAGCTGAGCTATGGCATTCTAAT
Found at i:71260677 original size:28 final size:29
Alignment explanation
Indices: 71260616--71260683 Score: 102
Period size: 28 Copynumber: 2.4 Consensus size: 29
71260606 TTCGAGCCAG
* *
71260616 ATGGGTCATATGAATGTGATTTGGGCCTA
1 ATGGGCCATATGAATGAGATTTGGGCCTA
71260645 ATGGGCCATATGAATGAGA-TTGGGCCTA
1 ATGGGCCATATGAATGAGATTTGGGCCTA
*
71260673 GTGGGCCATAT
1 ATGGGCCATAT
71260684 ACATGTATGT
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
28 19 0.53
29 17 0.47
ACGTcount: A:0.25, C:0.13, G:0.32, T:0.29
Consensus pattern (29 bp):
ATGGGCCATATGAATGAGATTTGGGCCTA
Found at i:71260767 original size:4 final size:4
Alignment explanation
Indices: 71260760--71260795 Score: 72
Period size: 4 Copynumber: 9.0 Consensus size: 4
71260750 CATACATAAA
71260760 AATT AATT AATT AATT AATT AATT AATT AATT AATT
1 AATT AATT AATT AATT AATT AATT AATT AATT AATT
71260796 GTGACTGTGG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (4 bp):
AATT
Found at i:71262693 original size:40 final size:39
Alignment explanation
Indices: 71262609--71262872 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 39
71262599 TCGAATGATG
* * * *
71262609 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* *
71262649 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
71262689 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
* *
71262728 TCCGGGTTAAGTCTCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAGTC-CGAAGGCATTTGTGCGAGTTACTAAA
* *
71262768 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
* *
71262807 TCCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
71262848 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
71262873 AACGAGTAGC
Statistics
Matches: 195, Mismatches: 24, Indels: 10
0.85 0.10 0.04
Matches are distributed among these distances:
39 70 0.36
40 115 0.59
41 10 0.05
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:71262746 original size:79 final size:79
Alignment explanation
Indices: 71262609--71262870 Score: 361
Period size: 79 Copynumber: 3.3 Consensus size: 79
71262599 TCGAATGATG
* * * * * **
71262609 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCGAAGGCATT
71262673 TGTGCGAGTTACTAAT
64 TGTGCGAGTTACTAAT
71262689 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCTCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTC-CGAAGGCATTT
71262753 GTGCGAGTTACTAAT
65 GTGCGAGTTACTAAT
71262768 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGT-CCGAAGGCATTT
*
71262832 GTGTGAGTTACT-AT
65 GTGCGAGTTACTAAT
* *
71262846 AACCGGGCTATGTCCCGAAGGCATT
1 -TCCGGGCTAAGTCCCGAAGGCATT
71262871 TGAACGAGTA
Statistics
Matches: 167, Mismatches: 10, Indels: 10
0.89 0.05 0.05
Matches are distributed among these distances:
78 4 0.02
79 133 0.80
80 30 0.18
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCGAAGGCATTTG
TGCGAGTTACTAAT
Found at i:71262823 original size:119 final size:121
Alignment explanation
Indices: 71262609--71262872 Score: 351
Period size: 119 Copynumber: 2.2 Consensus size: 121
71262599 TCGAATGATG
* *
71262609 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAATATCCGGACTAAGACCCGAAGGCATT
* *
71262673 TGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTA-AA
66 GGTGCGAGTTACTAAATCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTATAA
* * * * *
71262728 TCCGGGTTAAGTCTCGAAGGCATTTGTGC-GAGTTACTAAT-TCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGAC-AATATCCGGACTAAGACCCGAAGGCAT
* * *
71262790 TGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAA
65 TGGTGCGAGTTACTAAATCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTATAA
*
71262848 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
71262873 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 15, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
118 35 0.28
119 80 0.63
120 11 0.09
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (121 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAATATCCGGACTAAGACCCGAAGGCATT
GGTGCGAGTTACTAAATCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTATAA
Found at i:71262903 original size:79 final size:79
Alignment explanation
Indices: 71262609--71262903 Score: 332
Period size: 79 Copynumber: 3.7 Consensus size: 79
71262599 TCGAATGATG
* * * * * **
71262609 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAA-ATTCCGAAGGCAT
71262672 TTGTGCGAGTTACTAAT
63 TTGTGCGAGTTACTAAT
*
71262689 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTT-AAGTCTCGAAGGCATTT
1 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAATTC-CGAAGGCATTT
71262753 GTGCGAGTTACTAAT
65 GTGCGAGTTACTAAT
* *
71262768 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
1 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAATTCCGAAGGCATTTG
*
71262833 TGTGAGTTACT-AT
66 TGCGAGTTACTAAT
* * * ** *
71262846 AACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAATTCCGAA
1 -TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTA-CTAAATCCGGGTTAAATTCCGAA
71262904 TGTACGTAAT
Statistics
Matches: 189, Mismatches: 19, Indels: 15
0.85 0.09 0.07
Matches are distributed among these distances:
77 1 0.01
78 5 0.03
79 140 0.74
80 43 0.23
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAATTCCGAAGGCATTTG
TGCGAGTTACTAAT
Found at i:71270337 original size:40 final size:40
Alignment explanation
Indices: 71270190--71270452 Score: 340
Period size: 40 Copynumber: 6.7 Consensus size: 40
71270180 TCGAATGATG
* * * *
71270190 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
71270230 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACT-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
71270269 TTCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
71270308 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGACTTACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
71270348 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
71270387 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
71270428 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
71270453 AACGAGTAGC
Statistics
Matches: 195, Mismatches: 21, Indels: 14
0.85 0.09 0.06
Matches are distributed among these distances:
38 23 0.12
39 56 0.29
40 106 0.54
41 10 0.05
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:71270383 original size:79 final size:80
Alignment explanation
Indices: 71270190--71270450 Score: 363
Period size: 79 Copynumber: 3.3 Consensus size: 80
71270180 TCGAATGATG
* * * * * **
71270190 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
71270253 TTGTGCGAGTTACTAAT
64 TTGTGCGAGTTACTAAT
71270270 T-CGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
*
71270333 GTGCGACTTACTAAT
66 GTGCGAGTTACTAAT
71270348 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
71270412 GTGCGAGTTACT-AT
66 GTGCGAGTTACTAAT
* *
71270426 AACCGGGCTATGTCCCGAAGGCATT
1 -TCCGGGCTAAGTCCCGAAGGCATT
71270451 TGAACGAGTA
Statistics
Matches: 165, Mismatches: 11, Indels: 10
0.89 0.06 0.05
Matches are distributed among these distances:
77 1 0.01
78 54 0.33
79 97 0.59
80 13 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
GTGCGAGTTACTAAT
Found at i:71270422 original size:119 final size:120
Alignment explanation
Indices: 71270190--71270452 Score: 349
Period size: 119 Copynumber: 2.2 Consensus size: 120
71270180 TCGAATGATG
* * *
71270190 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAACTGACAATATCCGGACTAAGACCCGAAGGCATT
* *
71270254 TGTGCGAGTTACTAATTCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTA-AA
66 GGTGCGAGTTACTAATCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTATAA
* * * *
71270308 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GACTTACTAAT-TCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAACTGAC-AATATCCGGACTAAGACCCGAAGGCAT
* *
71270370 TGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
65 TGGTGCGAGTTACT-AATCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTATAA
*
71270428 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
71270453 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 13, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
117 23 0.18
118 45 0.35
119 57 0.45
120 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAACTGACAATATCCGGACTAAGACCCGAAGGCATT
GGTGCGAGTTACTAATCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTATAA
Found at i:71280825 original size:18 final size:18
Alignment explanation
Indices: 71280795--71280875 Score: 85
Period size: 18 Copynumber: 4.4 Consensus size: 18
71280785 AAGAAACATT
71280795 ATCAG-ATCTAGAATCAAA
1 ATCAGAATC-AGAATCAAA
*
71280813 ATGAGAATCAGAATCAAA
1 ATCAGAATCAGAATCAAA
* *
71280831 ATCAGAATCAG-GTGACAGA
1 ATCAGAATCAGAAT--CAAA
*
71280850 ATCAGAATCAGAATTAAA
1 ATCAGAATCAGAATCAAA
71280868 ATCAGAAT
1 ATCAGAAT
71280876 TAGGTGATAG
Statistics
Matches: 52, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
17 1 0.02
18 33 0.63
19 17 0.33
20 1 0.02
ACGTcount: A:0.51, C:0.14, G:0.16, T:0.20
Consensus pattern (18 bp):
ATCAGAATCAGAATCAAA
Found at i:71280827 original size:6 final size:6
Alignment explanation
Indices: 71280795--71280925 Score: 74
Period size: 6 Copynumber: 21.3 Consensus size: 6
71280785 AAGAAACATT
* * *
71280795 ATCAG- ATCTAGA ATCAAA ATGAGA ATCAGA ATCAAA ATCAGA ATCAG-
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * * * * *
71280842 GTGACAGA ATCAGA ATCAGA ATTAAA ATCAGA ATTAGGTG AT-AGA ATTAGA
1 AT--CAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
71280893 ATCA-A TATCAGGTA AT-AGA ATCAGA ATCAGA AT
1 ATCAGA -ATCA-G-A ATCAGA ATCAGA ATCAGA AT
71280926 GTGAATGCAA
Statistics
Matches: 97, Mismatches: 16, Indels: 25
0.70 0.12 0.18
Matches are distributed among these distances:
5 10 0.10
6 72 0.74
7 9 0.09
8 5 0.05
9 1 0.01
ACGTcount: A:0.49, C:0.11, G:0.18, T:0.22
Consensus pattern (6 bp):
ATCAGA
Found at i:71280858 original size:37 final size:37
Alignment explanation
Indices: 71280816--71280896 Score: 126
Period size: 37 Copynumber: 2.2 Consensus size: 37
71280806 AATCAAAATG
71280816 AGAATCAGAATCAAAATCAGAATCAGGTGACAGAATC
1 AGAATCAGAATCAAAATCAGAATCAGGTGACAGAATC
* * * *
71280853 AGAATCAGAATTAAAATCAGAATTAGGTGATAGAATT
1 AGAATCAGAATCAAAATCAGAATCAGGTGACAGAATC
71280890 AGAATCA
1 AGAATCA
71280897 ATATCAGGTA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.49, C:0.11, G:0.19, T:0.21
Consensus pattern (37 bp):
AGAATCAGAATCAAAATCAGAATCAGGTGACAGAATC
Found at i:71280887 original size:25 final size:25
Alignment explanation
Indices: 71280846--71280925 Score: 85
Period size: 25 Copynumber: 3.2 Consensus size: 25
71280836 AATCAGGTGA
*
71280846 CAGAATCA-G-AATCAGAATTAAAAT
1 CAGAATCAGGTAAT-AGAATTAGAAT
* *
71280870 CAGAATTAGGTGATAGAATTAGAAT
1 CAGAATCAGGTAATAGAATTAGAAT
*
71280895 CA-ATATCAGGTAATAGAATCAGAAT
1 CAGA-ATCAGGTAATAGAATTAGAAT
71280920 CAGAAT
1 CAGAAT
71280926 GTGAATGCAA
Statistics
Matches: 46, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
24 8 0.17
25 35 0.76
26 3 0.07
ACGTcount: A:0.49, C:0.10, G:0.17, T:0.24
Consensus pattern (25 bp):
CAGAATCAGGTAATAGAATTAGAAT
Found at i:71280888 original size:31 final size:34
Alignment explanation
Indices: 71280816--71280925 Score: 97
Period size: 31 Copynumber: 3.3 Consensus size: 34
71280806 AATCAAAATG
71280816 AGAATCAGAATCAAAATCAGAATCAGGTGACAGAATC
1 AGAATCAGAATCAAAATCAGAATCAGGT---AGAATC
* *
71280853 AGAATCAGAATTAAAATCAGAATTAGGT-G-AT-
1 AGAATCAGAATCAAAATCAGAATCAGGTAGAATC
* * * *
71280884 AGAATTAGAATCAATATCAG-GT-A-ATAGAATC
1 AGAATCAGAATCAAAATCAGAATCAGGTAGAATC
71280915 AGAATCAGAAT
1 AGAATCAGAAT
71280926 GTGAATGCAA
Statistics
Matches: 62, Mismatches: 8, Indels: 12
0.76 0.10 0.15
Matches are distributed among these distances:
28 1 0.02
29 2 0.03
30 3 0.05
31 27 0.44
32 2 0.03
33 1 0.02
37 26 0.42
ACGTcount: A:0.49, C:0.11, G:0.18, T:0.22
Consensus pattern (34 bp):
AGAATCAGAATCAAAATCAGAATCAGGTAGAATC
Found at i:71281582 original size:54 final size:54
Alignment explanation
Indices: 71281524--71281632 Score: 121
Period size: 54 Copynumber: 2.0 Consensus size: 54
71281514 TTAACACCCT
*
71281524 AAGGGCAAAATGGTAATAT-TACCCCACAAGGGTATCTCGGTAATTCTGCCCTAC
1 AAGGGCAAAATGGT-ATATCTACCCCACAAGGGTATCTCGGTAATTCTACCCTAC
* *** * * * *
71281578 AAGGGTATTTTGGTATTTCTACCCTACAAGGGTATTTCGGTAATTGTACCCTAC
1 AAGGGCAAAATGGTATATCTACCCCACAAGGGTATCTCGGTAATTCTACCCTAC
71281632 A
1 A
71281633 GGGGTATTTC
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
53 3 0.07
54 42 0.93
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.30
Consensus pattern (54 bp):
AAGGGCAAAATGGTATATCTACCCCACAAGGGTATCTCGGTAATTCTACCCTAC
Found at i:71281676 original size:27 final size:27
Alignment explanation
Indices: 71281535--71281669 Score: 182
Period size: 27 Copynumber: 5.0 Consensus size: 27
71281525 AGGGCAAAAT
* *
71281535 GGTAATAT-TACCCCACAAGGGTATCTC
1 GGTAAT-TCTACCCTACAAGGGTATTTC
* *
71281562 GGTAATTCTGCCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
*
71281589 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
71281616 GGTAATTGTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
71281643 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
71281670 AATAATTTTG
Statistics
Matches: 94, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
26 1 0.01
27 93 0.99
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.33
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:71281690 original size:27 final size:27
Alignment explanation
Indices: 71281660--71281764 Score: 70
Period size: 27 Copynumber: 3.9 Consensus size: 27
71281650 CTACCCTACA
71281660 AGGGT-ATTTCAATAATTTTGTAAATCG
1 AGGGTAATTT-AATAATTTTGTAAATCG
** ** *
71281687 AGGGTAAAATGGTAATTCTGTAAATCG
1 AGGGTAATTTAATAATTTTGTAAATCG
* ** ** *
71281714 GGGGTAATTTGGTAATTTTACAAGTCG
1 AGGGTAATTTAATAATTTTGTAAATCG
*
71281741 AGGGT-ATTTCAATAATTTGGTAAA
1 AGGGTAATTT-AATAATTTTGTAAA
71281765 CTAAAGTATT
Statistics
Matches: 57, Mismatches: 19, Indels: 4
0.71 0.24 0.05
Matches are distributed among these distances:
26 4 0.07
27 51 0.89
28 2 0.04
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.36
Consensus pattern (27 bp):
AGGGTAATTTAATAATTTTGTAAATCG
Found at i:71284169 original size:55 final size:53
Alignment explanation
Indices: 71284082--71284336 Score: 254
Period size: 55 Copynumber: 4.8 Consensus size: 53
71284072 ATTAGGGTTT
*
71284082 AAGGATACCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-AATTGGTAA-GTTTCTAAGGC
* * * * * *
71284137 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTT--TCTAAGGC
* * * *
71284192 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTC-TAAGGC
* *
71284245 AAGGATACCATGTAAGACCATGTCAAGACATGGAAATGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTCTAAGGC
* * *
71284294 AAGGATACCACGTAAGACCATGACAAGTCATGGCAA-TGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-AATTGGTAAG
71284337 GTACCCGTGT
Statistics
Matches: 169, Mismatches: 24, Indels: 20
0.79 0.11 0.09
Matches are distributed among these distances:
49 37 0.22
50 2 0.01
52 7 0.04
53 41 0.24
54 11 0.07
55 67 0.40
56 4 0.02
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTCTAAGGC
Found at i:71284288 original size:108 final size:110
Alignment explanation
Indices: 71284089--71284289 Score: 309
Period size: 108 Copynumber: 1.8 Consensus size: 110
71284079 TTTAAGGATA
*
71284089 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
* *
71284154 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGAAATGATAAGTTACTATAAGGCAAAGGTC
* * *
71284199 CCATGTAAGACCATGCCAAGGCATGG-CATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
71284261 ACCATGTCAAGACATGGAAATGGTAAGTT
65 ACCATGTCAAGACATGGAAATGATAAGTT
71284290 TCAAAAGGAT
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.57
109 7 0.08
110 26 0.31
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.22
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGAAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:71284549 original size:16 final size:16
Alignment explanation
Indices: 71284528--71284558 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
71284518 ATAAATTTGA
71284528 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
71284544 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
71284559 AGTGAGGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:71288537 original size:27 final size:26
Alignment explanation
Indices: 71288480--71288569 Score: 119
Period size: 26 Copynumber: 3.4 Consensus size: 26
71288470 CTGTAATCGA
* * *
71288480 TAAAATGACTATTTTGCCCTATGTGG
1 TAAAATGACTGTTTTGCCTTATGAGG
71288506 TAAAATGACTGTTTTGCTCTTATGAGG
1 TAAAATGACTGTTTTGC-CTTATGAGG
*
71288533 TAAAAGGACTGTTTTGCCCTTAT-AGG
1 TAAAATGACTGTTTTG-CCTTATGAGG
71288559 TAAAATGACTG
1 TAAAATGACTG
71288570 AAATGCCCTT
Statistics
Matches: 57, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
26 29 0.51
27 27 0.47
28 1 0.02
ACGTcount: A:0.29, C:0.13, G:0.21, T:0.37
Consensus pattern (26 bp):
TAAAATGACTGTTTTGCCTTATGAGG
Found at i:71288603 original size:27 final size:26
Alignment explanation
Indices: 71288480--71288604 Score: 128
Period size: 27 Copynumber: 4.7 Consensus size: 26
71288470 CTGTAATCGA
* *
71288480 TAAAATGACTATTTTGCCC-TATGTGG
1 TAAAATGACTGTTTTGCCCTTAT-AGG
*
71288506 TAAAATGACTGTTTTGCTCTTATGAGG
1 TAAAATGACTGTTTTGCCCTTAT-AGG
*
71288533 TAAAAGGACTGTTTTGCCCTTATAGG
1 TAAAATGACTGTTTTGCCCTTATAGG
***
71288559 TAAAATGACTGAAATGCCCTTGCAT-GG
1 TAAAATGACTGTTTTGCCCTT--ATAGG
*
71288586 TAAATTGACTGTTTTGCCC
1 TAAAATGACTGTTTTGCCC
71288605 CTATGTGAGG
Statistics
Matches: 83, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
26 37 0.45
27 44 0.53
28 2 0.02
ACGTcount: A:0.27, C:0.16, G:0.21, T:0.36
Consensus pattern (26 bp):
TAAAATGACTGTTTTGCCCTTATAGG
Found at i:71288984 original size:18 final size:18
Alignment explanation
Indices: 71288961--71289007 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
71288951 TACTGTTTAA
* *
71288961 ACTGTTACTGTACTGACT
1 ACTGTTACTGCACTAACT
* *
71288979 ACTGTTGCTGCACTAATT
1 ACTGTTACTGCACTAACT
71288997 ACTGTTACTGC
1 ACTGTTACTGC
71289008 TCCGTTTACT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.21, C:0.23, G:0.17, T:0.38
Consensus pattern (18 bp):
ACTGTTACTGCACTAACT
Found at i:71297311 original size:37 final size:37
Alignment explanation
Indices: 71297261--71297339 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
71297251 TTATTACGAA
* * *
71297261 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
* *
71297298 GTCTTACCCGGACAAAATCCCCACACGTAGTCATTGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
71297335 GTCTT
1 GTCTT
71297340 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:71297608 original size:47 final size:47
Alignment explanation
Indices: 71297458--71297970 Score: 812
Period size: 47 Copynumber: 10.9 Consensus size: 47
71297448 CCCTTCGGGA
** * * * * * *
71297458 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
71297505 CCTGTCACATATATACACTTTCACATTCA-CACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
71297551 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
71297598 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * **
71297645 CTTATCACATATATACACTTTCACATTCTTCACATCCACCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
71297692 CTTATCACACATGTACACTTTCACATTCATCACATCGGCCATTTGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
71297739 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTTGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
71297786 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
71297833 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
71297880 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
71297927 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTA
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTA
71297971 CTATCATTTC
Statistics
Matches: 437, Mismatches: 28, Indels: 2
0.94 0.06 0.00
Matches are distributed among these distances:
46 40 0.09
47 397 0.91
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:71299816 original size:26 final size:26
Alignment explanation
Indices: 71299780--71299842 Score: 110
Period size: 26 Copynumber: 2.4 Consensus size: 26
71299770 ACTGTCAATT
71299780 CATAATCAGGGGTACCCATC-GAGGTA
1 CATAATCAGGGGTACCCATCAG-GGTA
71299806 CATAATCAGGGGTACCCATCAGGGTA
1 CATAATCAGGGGTACCCATCAGGGTA
71299832 CATAATCAGGG
1 CATAATCAGGG
71299843 AGCATACTCT
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
26 35 0.97
27 1 0.03
ACGTcount: A:0.32, C:0.22, G:0.27, T:0.19
Consensus pattern (26 bp):
CATAATCAGGGGTACCCATCAGGGTA
Found at i:71302271 original size:89 final size:89
Alignment explanation
Indices: 71302120--71302297 Score: 338
Period size: 89 Copynumber: 2.0 Consensus size: 89
71302110 AATTCCTTGT
71302120 CATAACTCAAGAAATTCTATCTTTTTCTTGTCTAGATACCATTTCCCGACATACATCTTTTTCAA
1 CATAACTCAAGAAATTCTATCTTTTTCTTGTCTAGATACCATTTCCCGACATACATCTTTTTCAA
71302185 CTCACTCTGAAAGAAATCCCAGGA
66 CTCACTCTGAAAGAAATCCCAGGA
* *
71302209 CATAACTCAAGAAATTCTATCTTTTTCTTGTCTAGATACCATTTCTCGCCATACATCTTTTTCAA
1 CATAACTCAAGAAATTCTATCTTTTTCTTGTCTAGATACCATTTCCCGACATACATCTTTTTCAA
71302274 CTCACTCTGAAAGAAATCCCAGGA
66 CTCACTCTGAAAGAAATCCCAGGA
71302298 AATTTTCTTT
Statistics
Matches: 87, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
89 87 1.00
ACGTcount: A:0.31, C:0.26, G:0.09, T:0.34
Consensus pattern (89 bp):
CATAACTCAAGAAATTCTATCTTTTTCTTGTCTAGATACCATTTCCCGACATACATCTTTTTCAA
CTCACTCTGAAAGAAATCCCAGGA
Found at i:71302815 original size:13 final size:13
Alignment explanation
Indices: 71302797--71302824 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
71302787 TCCACACGCC
71302797 CGTGTCCCAAAGT
1 CGTGTCCCAAAGT
71302810 CGTGTCCCAAAGT
1 CGTGTCCCAAAGT
71302823 CG
1 CG
71302825 GTTGAGACAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.32, G:0.25, T:0.21
Consensus pattern (13 bp):
CGTGTCCCAAAGT
Found at i:71305277 original size:30 final size:30
Alignment explanation
Indices: 71305243--71305303 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
71305233 TCCTTAACTC
71305243 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
71305273 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
71305303 A
1 A
71305304 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:71308471 original size:19 final size:20
Alignment explanation
Indices: 71308447--71308484 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
71308437 GGTACCACCA
71308447 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
71308466 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
71308485 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:71308834 original size:93 final size:93
Alignment explanation
Indices: 71308715--71308884 Score: 277
Period size: 93 Copynumber: 1.8 Consensus size: 93
71308705 CCCCTAAGTA
* * *
71308715 AACTCGGACTCAACTCAACGAGTTCGGGCGTTCGTATCCATAAATGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGTTCGGACATTCGAATCCATAAATGAACTCGGACTCAACTCAAC
71308780 GAGTTCGGATGCCTAGTTACATCTCACG
66 GAGTTCGGATGCCTAGTTACATCTCACG
* * * *
71308808 AACTCGGACTCAACTGAATGAGTTCGGACATTTGAATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGTTCGGACATTCGAATCCATAAATGAACTCGGACTCAACTCAAC
71308873 GAGTTCGGATGC
66 GAGTTCGGATGC
71308885 TCAACCATCC
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGTTCGGACATTCGAATCCATAAATGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCACG
Found at i:71308881 original size:46 final size:46
Alignment explanation
Indices: 71308709--71308881 Score: 174
Period size: 46 Copynumber: 3.7 Consensus size: 46
71308699 AACCCGCCCC
* * * * *
71308709 TAAGTAAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGTATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGAATCCA
* *
71308755 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGA-ATCCA
* * * *
71308803 TCA-CGAACTCGGACTCAACTGAATGAGTTCGGACATTTGAATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGAATCCA
71308848 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
71308882 TGCTCAACCA
Statistics
Matches: 102, Mismatches: 16, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
43 5 0.05
44 3 0.03
45 2 0.02
46 58 0.57
47 27 0.26
48 2 0.02
49 2 0.02
50 3 0.03
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.24
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGAATCCA
Found at i:71312037 original size:48 final size:48
Alignment explanation
Indices: 71311972--71312193 Score: 206
Period size: 48 Copynumber: 4.7 Consensus size: 48
71311962 GGTTATGTGT
* * *
71311972 GATCCCATGTAAGACCATGCCTAGGACATGGCATTGGCATCGTTATGA
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGA
* * * * * *
71312020 GATCCCATGTAATACCATGTATGGGACATGGAATTGTCATCGACATGT
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGA
* *
71312068 GATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATATGA
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGA
* * * * * * *
71312116 GA-CATCGTGTAAGACCATAG-CTAGG-C-T---ATCGGCTTCGATTTGT
1 GATC-CCATGTAAGACCAT-GTCTGGGACATGGCATTGGCATCGATATGA
*
71312159 GATCCCATGTAAGACCATGTCTGGGATATGGCATT
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATT
71312194 AGAATCTTAC
Statistics
Matches: 134, Mismatches: 31, Indels: 18
0.73 0.17 0.10
Matches are distributed among these distances:
42 1 0.01
43 30 0.22
44 1 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 99 0.74
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (48 bp):
GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGA
Found at i:71318649 original size:42 final size:42
Alignment explanation
Indices: 71318591--71318700 Score: 105
Period size: 44 Copynumber: 2.6 Consensus size: 42
71318581 AAAGCCACTT
* * *** **
71318591 TCCCAGATAGGGTCTTACACGAAA-TCAAATACGATGTTGATG
1 TCCCAGACATGGTCTTACACGAAACTCAAA-ACGATGCCAACA
*
71318633 TCCCAGACATGGTCTTACATGTAAATCTCAAAACGATGCCAACA
1 TCCCAGACATGGTCTTACACG-AAA-CTCAAAACGATGCCAACA
*
71318677 TCCCAGACGTGGTCTTACACGAAA
1 TCCCAGACATGGTCTTACACGAAA
71318701 GCACATATCG
Statistics
Matches: 55, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
42 18 0.33
43 6 0.11
44 26 0.47
45 5 0.09
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.24
Consensus pattern (42 bp):
TCCCAGACATGGTCTTACACGAAACTCAAAACGATGCCAACA
Found at i:71327113 original size:93 final size:93
Alignment explanation
Indices: 71327006--71327177 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
71326996 GCCCCTAAGT
* *
71327006 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGAATCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGAATCAACTCAA
71327071 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* * *
71327099 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGAATCAACTCAA
71327164 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
71327178 CAACCATCCT
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGAATCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:71327173 original size:46 final size:46
Alignment explanation
Indices: 71327001--71327173 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
71326991 AACCCGCCCC
* * * *
71327001 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * * *
71327047 TAAGTGAACTCGGAATCAACTCAACGAGTTCGGATGCCTAGTTACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
71327095 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
71327140 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
71327174 TGCCCAACCA
Statistics
Matches: 104, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
44 1 0.01
45 2 0.02
46 60 0.58
47 28 0.27
48 2 0.02
49 1 0.01
50 4 0.04
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:71335255 original size:26 final size:26
Alignment explanation
Indices: 71335225--71335277 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
71335215 AGTTAATTCT
*
71335225 TTTATTCAACAAATCATTCAATTCAA
1 TTTATTCAAAAAATCATTCAATTCAA
71335251 TTTATTCAAAAAATCATTCAATTCAA
1 TTTATTCAAAAAATCATTCAATTCAA
71335277 T
1 T
71335278 CCATAGACAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.43, C:0.17, G:0.00, T:0.40
Consensus pattern (26 bp):
TTTATTCAAAAAATCATTCAATTCAA
Found at i:71340603 original size:40 final size:39
Alignment explanation
Indices: 71340548--71340623 Score: 116
Period size: 40 Copynumber: 1.9 Consensus size: 39
71340538 AATATAGCCA
71340548 AAGCTATCTCAAATTGCACACCAAGTGCCACTTTTAGTCG
1 AAGCTATCTCAAATTGCACACCAAGTGCCA-TTTTAGTCG
* * *
71340588 AAGCTATTTCGAATTGCACACTAAGTGCCATTTTAG
1 AAGCTATCTCAAATTGCACACCAAGTGCCATTTTAG
71340624 CCGATAAGTC
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
39 6 0.18
40 27 0.82
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (39 bp):
AAGCTATCTCAAATTGCACACCAAGTGCCATTTTAGTCG
Found at i:71341048 original size:41 final size:41
Alignment explanation
Indices: 71340989--71341104 Score: 214
Period size: 41 Copynumber: 2.8 Consensus size: 41
71340979 AATTTGATAT
*
71340989 ATGCTCATATCAGCCCATATTTTTAATTTATTCATTCATAC
1 ATGCTCATATCAGTCCATATTTTTAATTTATTCATTCATAC
*
71341030 ATGCTCATATCAGTCCATATTTTTAATTTATTCATTTATAC
1 ATGCTCATATCAGTCCATATTTTTAATTTATTCATTCATAC
71341071 ATGCTCATATCAGTCCATATTTTTAATTTATTCA
1 ATGCTCATATCAGTCCATATTTTTAATTTATTCA
71341105 CACTTTTACC
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 73 1.00
ACGTcount: A:0.29, C:0.19, G:0.05, T:0.47
Consensus pattern (41 bp):
ATGCTCATATCAGTCCATATTTTTAATTTATTCATTCATAC
Found at i:71344773 original size:50 final size:50
Alignment explanation
Indices: 71344704--71344836 Score: 187
Period size: 50 Copynumber: 2.7 Consensus size: 50
71344694 ATATCGAGTG
*
71344704 GATGCCATGTCCTAGACATGGTCTTACACTGACTCT-CTTATATAGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTCTCCTTATATAG-GGCC
* * * * * *
71344754 GATGCCATATCCCAGACATGGTCTTACACTGGCTCTCCTTTTTTCGTGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTCTCCTTATATAGGGCC
71344804 GATGCCATGTCCCAGACATGGTCTTACACTGAC
1 GATGCCATGTCCCAGACATGGTCTTACACTGAC
71344837 ACATATCAAG
Statistics
Matches: 73, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
50 67 0.92
51 6 0.08
ACGTcount: A:0.21, C:0.29, G:0.20, T:0.30
Consensus pattern (50 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGACTCTCCTTATATAGGGCC
Found at i:71353166 original size:42 final size:43
Alignment explanation
Indices: 71353058--71353229 Score: 131
Period size: 43 Copynumber: 4.0 Consensus size: 43
71353048 AGCTCGTACA
* * *
71353058 ATGCCAAC-GTCCCAGACATGGTCTTATATGTAATCAAATATCG
1 ATGCC-ACTGTCCCAGACATGGTCTTACACGAAATCAAATATCG
* * *
71353101 ATGCCACTATCCCAAACAAGGTCTTACACGAAATCAAATA-CG
1 ATGCCACTGTCCCAGACATGGTCTTACACGAAATCAAATATCG
* *
71353143 ATGTCGA-TGTCCCAGACATGGTCTTACA-GTAAATCTCAA-ATCG
1 ATG-CCACTGTCCCAGACATGGTCTTACACG-AAATC-AAATATCG
* ** * * *
71353186 ATGGCAAC-GTCTGAGACGTGGTCTTACATGAAATCACATATCG
1 AT-GCCACTGTCCCAGACATGGTCTTACACGAAATCAAATATCG
71353229 A
1 A
71353230 AATCCTATGT
Statistics
Matches: 103, Mismatches: 17, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
41 1 0.01
42 32 0.31
43 68 0.66
44 2 0.02
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (43 bp):
ATGCCACTGTCCCAGACATGGTCTTACACGAAATCAAATATCG
Found at i:71357066 original size:39 final size:40
Alignment explanation
Indices: 71357021--71357244 Score: 235
Period size: 40 Copynumber: 5.7 Consensus size: 40
71357011 GCTCCTCGTT
* * * *
71357021 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
71357061 C-AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
71357100 CGAATGCCTTCGGGACTTAACCCGGATTTAGT-ACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
71357139 CAAAGGCCTTCGAGG-CTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCG-GGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
71357179 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
71357220 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
71357245 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 18, Indels: 18
0.81 0.09 0.09
Matches are distributed among these distances:
38 2 0.01
39 66 0.42
40 78 0.50
41 11 0.07
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:71357110 original size:79 final size:77
Alignment explanation
Indices: 71357021--71357244 Score: 245
Period size: 79 Copynumber: 2.8 Consensus size: 77
71357011 GCTCCTCGTT
* * *
71357021 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCACACAAAGCCTTCGGGACTTAACCCGGA
71357086 TTTAATAACTCGCA
65 TTT-ATAACTCGCA
* * *
71357100 CGAATGCCTTCGGGACTTAACCCGGATTTAGTACTCGCACAAAGGCCTTCGAGG-CTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCACACAAA-GCCTTCG-GGACTTAACCCGG
* *
71357164 AATTTGTATCTCGCA
64 -ATTTATAACTCGCA
* * * * *
71357179 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-ACTCA-CACAAAGCCTTCGGGACTTAACCCG
71357243 GA
63 GA
71357245 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
78 12 0.10
79 79 0.65
80 25 0.20
81 6 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (77 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCACACAAAGCCTTCGGGACTTAACCCGGAT
TTATAACTCGCA
Found at i:71357253 original size:41 final size:41
Alignment explanation
Indices: 71357176--71357253 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
71357166 TTTGTATCTC
* * *
71357176 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
71357217 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
71357254 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:71364626 original size:39 final size:40
Alignment explanation
Indices: 71364581--71364803 Score: 240
Period size: 39 Copynumber: 5.7 Consensus size: 40
71364571 GCTCCTCGTT
* * * *
71364581 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
71364621 C-AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
71364660 CGAATGCCTTCGGGACTTAACCCGGATTTAGT-ACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
71364699 CAAAGGCCTTCGGGGCTTAACCCGGAATT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
71364738 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
71364779 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
71364804 CAGCATTCAA
Statistics
Matches: 155, Mismatches: 22, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
38 4 0.03
39 92 0.59
40 48 0.31
41 11 0.07
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:71364684 original size:79 final size:77
Alignment explanation
Indices: 71364581--71364803 Score: 250
Period size: 79 Copynumber: 2.8 Consensus size: 77
71364571 GCTCCTCGTT
* * *
71364581 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCACACAAAGCCTTCGGGACTTAACCCGGA
*
71364646 TTTAATAACTCGCA
65 ATT-ATAACTCGCA
* * * *
71364660 CGAATGCCTTCGGGACTTAACCCGGATTTAGTACTCGCACAAAGGCCTTCGGGGCTTAACCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCACACAAA-GCCTTCGGGACTTAACCCGGA
* *
71364725 ATTGTATCTCGCA
65 ATTATAACTCGCA
* * * * *
71364738 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-ACTCA-CACAAAGCCTTCGGGACTTAACCCG
71364802 GA
63 GA
71364804 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
77 3 0.02
78 40 0.33
79 72 0.60
80 6 0.05
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (77 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCACACAAAGCCTTCGGGACTTAACCCGGAA
TTATAACTCGCA
Found at i:71364812 original size:41 final size:41
Alignment explanation
Indices: 71364735--71364812 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
71364725 ATTGTATCTC
* * *
71364735 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
71364776 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
71364813 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:71372505 original size:79 final size:81
Alignment explanation
Indices: 71372402--71372586 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
71372392 GCTCCTCGGT
* *
71372402 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
71372465 GGATTTAGTAAC-TCGCA
64 GGATATAGTAACTTAGCA
* **
71372482 CAAATGCCTTCGGGA-TTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
71372546 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
71372562 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
71372587 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:71372586 original size:40 final size:40
Alignment explanation
Indices: 71372402--71372586 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
71372392 GCTCCTCGGT
* *
71372402 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
71372442 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
71372482 CAAATGCCTTCGGGA-TTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
71372521 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
71372562 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
71372587 CATCATTCAA
Statistics
Matches: 126, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 3 0.02
39 31 0.25
40 80 0.63
41 12 0.10
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:71374505 original size:7 final size:7
Alignment explanation
Indices: 71374493--71374521 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
71374483 ACATTTCTAA
71374493 TCATCCC
1 TCATCCC
71374500 TCATCCC
1 TCATCCC
71374507 TCATCCC
1 TCATCCC
71374514 TCATCCC
1 TCATCCC
71374521 T
1 T
71374522 TATCATTCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.14, C:0.55, G:0.00, T:0.31
Consensus pattern (7 bp):
TCATCCC
Found at i:71374531 original size:21 final size:21
Alignment explanation
Indices: 71374493--71374532 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
71374483 ACATTTCTAA
*
71374493 TCATCCCTCATCCCTCATCCC
1 TCATCCCTCATCACTCATCCC
* *
71374514 TCATCCCTTATCATTCATC
1 TCATCCCTCATCACTCATC
71374533 ATTCTCTCCT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.17, C:0.47, G:0.00, T:0.35
Consensus pattern (21 bp):
TCATCCCTCATCACTCATCCC
Found at i:71376534 original size:27 final size:27
Alignment explanation
Indices: 71376496--71376665 Score: 173
Period size: 27 Copynumber: 6.3 Consensus size: 27
71376486 AAAAATAGCC
*
71376496 ATTTTACCCTACAGGGGTATTTCAGTA
1 ATTTTACACTACAGGGGTATTTCAGTA
* * *
71376523 ATTTTACACTACAAGGGTATTT-TGATT
1 ATTTTACACTACAGGGGTATTTCAG-TA
** *
71376550 ATTTTACACTACAGGGGTATTTTGGTG
1 ATTTTACACTACAGGGGTATTTCAGTA
**
71376577 ATTTTACACTACAGGGGTATTTTGGTA
1 ATTTTACACTACAGGGGTATTTCAGTA
* *
71376604 ATTTAACACTACAAGGGTATTTC-GATA
1 ATTTTACACTACAGGGGTATTTCAG-TA
* * * *
71376631 ATTTTCCACTACCGTGGTATTTCAATA
1 ATTTTACACTACAGGGGTATTTCAGTA
71376658 ATTTTACA
1 ATTTTACA
71376666 AACTGGGGTC
Statistics
Matches: 121, Mismatches: 18, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
26 2 0.02
27 118 0.98
28 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.40
Consensus pattern (27 bp):
ATTTTACACTACAGGGGTATTTCAGTA
Found at i:71376635 original size:81 final size:81
Alignment explanation
Indices: 71376496--71376652 Score: 233
Period size: 81 Copynumber: 1.9 Consensus size: 81
71376486 AAAAATAGCC
* * * *
71376496 ATTTTACCCTACAGGGGTATTTCAGTAATTTTACACTACAAGGGTATTTTGATTATTTTACACTA
1 ATTTTACACTACAGGGGTATTTCAGTAATTTAACACTACAAGGGTATTTCGATAATTTTACACTA
71376561 CAGGGGTATTTTGGTG
66 CAGGGGTATTTTGGTG
** *
71376577 ATTTTACACTACAGGGGTATTTTGGTAATTTAACACTACAAGGGTATTTCGATAATTTTCCACTA
1 ATTTTACACTACAGGGGTATTTCAGTAATTTAACACTACAAGGGTATTTCGATAATTTTACACTA
* *
71376642 CCGTGGTATTT
66 CAGGGGTATTT
71376653 CAATAATTTT
Statistics
Matches: 67, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 67 1.00
ACGTcount: A:0.27, C:0.15, G:0.18, T:0.40
Consensus pattern (81 bp):
ATTTTACACTACAGGGGTATTTCAGTAATTTAACACTACAAGGGTATTTCGATAATTTTACACTA
CAGGGGTATTTTGGTG
Found at i:71390122 original size:54 final size:54
Alignment explanation
Indices: 71390040--71390229 Score: 240
Period size: 54 Copynumber: 3.5 Consensus size: 54
71390030 GGTCGTTAAG
* * * *
71390040 ACCCCTGATTTGTAAAATTACCGAAATACCCCCAAGTTGTAAAATTATCGAAAT
1 ACCCCTGATTTGTAAAATTACCAAAATACCCTCAATTTGTGAAATTATCGAAAT
* *
71390094 ACCCCTAATTTGTGAAATTACCAAAATACCCTCAATTTGTGAAATTATCGAAAT
1 ACCCCTGATTTGTAAAATTACCAAAATACCCTCAATTTGTGAAATTATCGAAAT
* ** **
71390148 A-CCCTGATTTGTGAAATTATTAAAATACCCTTGATTTGTGAAATTA-CTGAAAT
1 ACCCCTGATTTGTAAAATTACCAAAATACCCTCAATTTGTGAAATTATC-GAAAT
* *
71390201 ACCCCTGACTTGTAAAATTACTAAAATAC
1 ACCCCTGATTTGTAAAATTACCAAAATAC
71390230 ACTTGATTTA
Statistics
Matches: 120, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
52 1 0.01
53 46 0.38
54 73 0.61
ACGTcount: A:0.38, C:0.19, G:0.11, T:0.32
Consensus pattern (54 bp):
ACCCCTGATTTGTAAAATTACCAAAATACCCTCAATTTGTGAAATTATCGAAAT
Found at i:71390222 original size:27 final size:27
Alignment explanation
Indices: 71390040--71390257 Score: 183
Period size: 27 Copynumber: 8.1 Consensus size: 27
71390030 GGTCGTTAAG
*
71390040 ACCCCTGATTTGTAAAATTACCGAAAT
1 ACCCCTGATTTGTAAAATTACTGAAAT
** *
71390067 ACCCCCAAGTTGTAAAATTA-TCGAAAT
1 ACCCCTGATTTGTAAAATTACT-GAAAT
* * **
71390094 ACCCCTAATTTGTGAAATTACCAAAAT
1 ACCCCTGATTTGTAAAATTACTGAAAT
* *
71390121 A-CCCTCAATTTGTGAAATTA-TCGAAAT
1 ACCCCT-GATTTGTAAAATTACT-GAAAT
* * *
71390148 A-CCCTGATTTGTGAAATTATTAAAAT
1 ACCCCTGATTTGTAAAATTACTGAAAT
* *
71390174 ACCCTTGATTTGTGAAATTACTGAAAT
1 ACCCCTGATTTGTAAAATTACTGAAAT
* *
71390201 ACCCCTGACTTGTAAAATTACTAAAAT
1 ACCCCTGATTTGTAAAATTACTGAAAT
* * * **
71390228 ACACTTGATTTATAAAATTTTTGAAAT
1 ACCCCTGATTTGTAAAATTACTGAAAT
71390255 ACC
1 ACC
71390258 TCTATGGGGT
Statistics
Matches: 157, Mismatches: 28, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
26 22 0.14
27 135 0.86
ACGTcount: A:0.39, C:0.18, G:0.10, T:0.33
Consensus pattern (27 bp):
ACCCCTGATTTGTAAAATTACTGAAAT
Found at i:71390235 original size:54 final size:54
Alignment explanation
Indices: 71390040--71390257 Score: 233
Period size: 54 Copynumber: 4.1 Consensus size: 54
71390030 GGTCGTTAAG
* * *
71390040 ACCCCTGATTTGTAAAATTACCGAAATACCCCCAAGTTGTAAAATTATCGAAAT
1 ACCCCTGATTTGTAAAATTACCAAAATACCCTCAATTTGTAAAATTATCGAAAT
* * *
71390094 ACCCCTAATTTGTGAAATTACCAAAATACCCTCAATTTGTGAAATTATCGAAAT
1 ACCCCTGATTTGTAAAATTACCAAAATACCCTCAATTTGTAAAATTATCGAAAT
* ** ** *
71390148 A-CCCTGATTTGTGAAATTATTAAAATACCCTTGATTTGTGAAATTA-CTGAAAT
1 ACCCCTGATTTGTAAAATTACCAAAATACCCTCAATTTGTAAAATTATC-GAAAT
* * * ** * * *
71390201 ACCCCTGACTTGTAAAATTACTAAAATACACTTGATTTATAAAATTTTTGAAAT
1 ACCCCTGATTTGTAAAATTACCAAAATACCCTCAATTTGTAAAATTATCGAAAT
71390255 ACC
1 ACC
71390258 TCTATGGGGT
Statistics
Matches: 142, Mismatches: 19, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
52 1 0.01
53 46 0.32
54 95 0.67
ACGTcount: A:0.39, C:0.18, G:0.10, T:0.33
Consensus pattern (54 bp):
ACCCCTGATTTGTAAAATTACCAAAATACCCTCAATTTGTAAAATTATCGAAAT
Found at i:71390336 original size:27 final size:27
Alignment explanation
Indices: 71390250--71390349 Score: 101
Period size: 27 Copynumber: 3.7 Consensus size: 27
71390240 TAAAATTTTT
* * * *
71390250 GAAATACCTCTATGGGGTAAGATTATC
1 GAAATACCCCTGTAGGGTAGGATTATC
* *
71390277 GAAATACCCCTATAGGGTAGGATTACC
1 GAAATACCCCTGTAGGGTAGGATTATC
* * *
71390304 AAAATACCCCTGTAAGGTAGGATTATT
1 GAAATACCCCTGTAGGGTAGGATTATC
* *
71390331 GTAATACCCTTGTAGGGTA
1 GAAATACCCCTGTAGGGTA
71390350 AAATGATCGT
Statistics
Matches: 60, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 60 1.00
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGGATTATC
Found at i:71390402 original size:26 final size:26
Alignment explanation
Indices: 71390337--71390403 Score: 71
Period size: 26 Copynumber: 2.5 Consensus size: 26
71390327 TATTGTAATA
*
71390337 CCCTTGTAGGGTAAAATGATCGTTTTG
1 CCCTTGT-GGGTAAAATGATCGTTCTG
*** * *
71390364 CCCTAAAGAGTAAAATGATTGTTCTG
1 CCCTTGTGGGTAAAATGATCGTTCTG
71390390 CCCTTGTGGGTAAA
1 CCCTTGTGGGTAAA
71390404 TGACTGACTT
Statistics
Matches: 30, Mismatches: 10, Indels: 1
0.73 0.24 0.02
Matches are distributed among these distances:
26 26 0.87
27 4 0.13
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.33
Consensus pattern (26 bp):
CCCTTGTGGGTAAAATGATCGTTCTG
Found at i:71390944 original size:32 final size:32
Alignment explanation
Indices: 71390866--71390946 Score: 81
Period size: 32 Copynumber: 2.5 Consensus size: 32
71390856 CCAAAGTCTG
* * * *
71390866 TGTGCCAATTATATTACTGTCGCTGATGGCTA
1 TGTGCCAATTATAATACAGTCACCGATGGCTA
* ** * *
71390898 TGTTCCAAACATAATACAGTTACCGATGGCTT
1 TGTGCCAATTATAATACAGTCACCGATGGCTA
71390930 TGTGCCAATTATAATAC
1 TGTGCCAATTATAATAC
71390947 CATTATTGAA
Statistics
Matches: 37, Mismatches: 12, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.35
Consensus pattern (32 bp):
TGTGCCAATTATAATACAGTCACCGATGGCTA
Found at i:71401888 original size:31 final size:31
Alignment explanation
Indices: 71401853--71401914 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
71401843 ATATACAAAG
*
71401853 TTAAATCGATTTGTGATTCTGATACATTAGT
1 TTAAATCGATTTGTGATTCTGAGACATTAGT
71401884 TTAAATCGATTTGTGATTCTGAGACATTAGT
1 TTAAATCGATTTGTGATTCTGAGACATTAGT
71401915 GAAAGTGTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.29, C:0.10, G:0.18, T:0.44
Consensus pattern (31 bp):
TTAAATCGATTTGTGATTCTGAGACATTAGT
Found at i:71405309 original size:32 final size:32
Alignment explanation
Indices: 71405268--71405340 Score: 103
Period size: 32 Copynumber: 2.3 Consensus size: 32
71405258 CTAAGGACAT
71405268 AGGCGTGTGT-GACCACACGGCCTAAGCCACAC
1 AGGCGTGTGTAG-CCACACGGCCTAAGCCACAC
* *
71405300 AGGCATGTGTAGCCACACGGCCTAATCCACAC
1 AGGCGTGTGTAGCCACACGGCCTAAGCCACAC
*
71405332 GGGCGTGTG
1 AGGCGTGTG
71405341 ACTCTCCAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
32 35 0.97
33 1 0.03
ACGTcount: A:0.23, C:0.32, G:0.30, T:0.15
Consensus pattern (32 bp):
AGGCGTGTGTAGCCACACGGCCTAAGCCACAC
Found at i:71407646 original size:20 final size:20
Alignment explanation
Indices: 71407600--71407640 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
71407590 CAACGAGCAT
71407600 AAATACTATTTATATGGATG
1 AAATACTATTTATATGGATG
71407620 AAATACTATTTATATGGATG
1 AAATACTATTTATATGGATG
71407640 A
1 A
71407641 GCTACTGTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.41, C:0.05, G:0.15, T:0.39
Consensus pattern (20 bp):
AAATACTATTTATATGGATG
Found at i:71408855 original size:42 final size:41
Alignment explanation
Indices: 71408722--71408899 Score: 146
Period size: 43 Copynumber: 4.2 Consensus size: 41
71408712 TGTGACCTAA
* * *
71408722 GTCTGGGACATCAGCATCGTATCTGATT-CGTGCAAGACCTT
1 GTCTGGGACATCGGCATCGTAT-TGATTACGTGTAAGACCAT
* *
71408763 GTCTGGGACA-CAGGCCTCG-ATTGAGAGTTACGTATAAGACCAT
1 GTCTGGGACATC-GGCATCGTATT--GA-TTACGTGTAAGACCAT
* *
71408806 GTCTGGGACATCGGCATCGTATCTGATTTCGTGTAAGACCCT
1 GTCTGGGACATCGGCATCGTAT-TGATTACGTGTAAGACCAT
* ** * *
71408848 GTATGGGACAGAGGCATCGATATTGAATTACATGTAAGACCAC
1 GTCTGGGACATCGGCATCG-TATTG-ATTACGTGTAAGACCAT
*
71408891 GTCCGGGAC
1 GTCTGGGAC
71408900 GTCGACATTG
Statistics
Matches: 109, Mismatches: 18, Indels: 18
0.75 0.12 0.12
Matches are distributed among these distances:
39 1 0.01
40 3 0.03
41 17 0.16
42 33 0.30
43 51 0.47
44 3 0.03
45 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (41 bp):
GTCTGGGACATCGGCATCGTATTGATTACGTGTAAGACCAT
Found at i:71408886 original size:85 final size:84
Alignment explanation
Indices: 71408722--71408899 Score: 225
Period size: 85 Copynumber: 2.1 Consensus size: 84
71408712 TGTGACCTAA
* * *
71408722 GTCTGGGACATCAGCATCGTATCTGATTCGTGCAAGACCTTGTCTGGGACACAGGCCTCGATTGA
1 GTCTGGGACATCAGCATCGTATCTGATTCGTGCAAGACCCTGTATGGGACACAGGCATCGATTGA
* *
71408787 GAGTTACGTATAAGACCAT
66 GAGTTACATATAAGACCAC
* * *
71408806 GTCTGGGACATCGGCATCGTATCTGATTTCGTGTAAGACCCTGTATGGGACAGAGGCATCGATAT
1 GTCTGGGACATCAGCATCGTATCTGA-TTCGTGCAAGACCCTGTATGGGACACAGGCATCG--AT
*
71408871 TGA-A-TTACATGTAAGACCAC
63 TGAGAGTTACATATAAGACCAC
*
71408891 GTCCGGGAC
1 GTCTGGGAC
71408900 GTCGACATTG
Statistics
Matches: 81, Mismatches: 10, Indels: 5
0.84 0.10 0.05
Matches are distributed among these distances:
84 25 0.31
85 50 0.62
86 1 0.01
87 5 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (84 bp):
GTCTGGGACATCAGCATCGTATCTGATTCGTGCAAGACCCTGTATGGGACACAGGCATCGATTGA
GAGTTACATATAAGACCAC
Found at i:71410149 original size:27 final size:28
Alignment explanation
Indices: 71410091--71410191 Score: 102
Period size: 27 Copynumber: 3.8 Consensus size: 28
71410081 TGCCCAACAG
*
71410091 GGGTATTTCGGTAATTTTACACTAC-AA
1 GGGTATTTCGGTAATTTTACACAACGAA
* *
71410118 AGGTATTTCGGTAATTTTAGA-AACGAA
1 GGGTATTTCGGTAATTTTACACAACGAA
* * **
71410145 GGGTATTTCGAT-ATTTTACAGATTGAA
1 GGGTATTTCGGTAATTTTACACAACGAA
*
71410172 -GGTATTTCAGTAATTTTACA
1 GGGTATTTCGGTAATTTTACA
71410192 AACCAGGGGT
Statistics
Matches: 61, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
26 18 0.30
27 43 0.70
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.39
Consensus pattern (28 bp):
GGGTATTTCGGTAATTTTACACAACGAA
Done.