Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 208 of 295
Found at i:71411893 original size:47 final size:47
Alignment explanation
Indices: 71411819--71411972 Score: 272
Period size: 47 Copynumber: 3.3 Consensus size: 47
71411809 TCCTTCGGGA
*
71411819 CTTATCACATATATACACTTTCCCATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
** *
71411866 CTTATCACATATATACACTTTCACATTCATCACATTTGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
71411913 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
71411960 CTTATCACATATA
1 CTTATCACATATA
71411973 CATATCTTGT
Statistics
Matches: 100, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 100 1.00
ACGTcount: A:0.29, C:0.30, G:0.07, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:71413840 original size:13 final size:13
Alignment explanation
Indices: 71413822--71413846 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
71413812 TACTAAATTT
71413822 TCATGGATTCAAA
1 TCATGGATTCAAA
71413835 TCATGGATTCAA
1 TCATGGATTCAA
71413847 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAA
Found at i:71415456 original size:17 final size:18
Alignment explanation
Indices: 71415421--71415459 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
71415411 GAAATGGAAA
**
71415421 GAGAGGGAAAAAGGGTTT
1 GAGAGGGAAAAAGAATTT
71415439 GAGAGGG-AAAAGAATTT
1 GAGAGGGAAAAAGAATTT
71415456 GAGA
1 GAGA
71415460 AAAAAACTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 12 0.63
18 7 0.37
ACGTcount: A:0.44, C:0.00, G:0.41, T:0.15
Consensus pattern (18 bp):
GAGAGGGAAAAAGAATTT
Found at i:71419238 original size:16 final size:16
Alignment explanation
Indices: 71419217--71419249 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
71419207 ACACTTAACC
*
71419217 AAAAATTCTAAGCACA
1 AAAAATGCTAAGCACA
71419233 AAAAATGCTAAGCACA
1 AAAAATGCTAAGCACA
71419249 A
1 A
71419250 GGAGACCCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.58, C:0.18, G:0.09, T:0.15
Consensus pattern (16 bp):
AAAAATGCTAAGCACA
Found at i:71421783 original size:28 final size:28
Alignment explanation
Indices: 71421723--71421796 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
71421713 ATACATGTAT
* *
71421723 ATGGCCCACTAGGCCCAATCTCTTTCAT
1 ATGGCCCATTAGGCCCAATCTCTTTCAC
*
71421751 ATGGCCCATTAGGCCCAATCT-TATTTAC
1 ATGGCCCATTAGGCCCAATCTCT-TTCAC
* *
71421779 GTGGCCTATTAGGCCCAA
1 ATGGCCCATTAGGCCCAA
71421797 ATCACATTTA
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.03
28 39 0.98
ACGTcount: A:0.23, C:0.31, G:0.18, T:0.28
Consensus pattern (28 bp):
ATGGCCCATTAGGCCCAATCTCTTTCAC
Found at i:71428712 original size:47 final size:47
Alignment explanation
Indices: 71428649--71428762 Score: 140
Period size: 47 Copynumber: 2.4 Consensus size: 47
71428639 TATCGATATA
* * * *
71428649 TCAACTCGTAAGAGCTTACTATTTTAACCTCGTTGGAGCTTACTATT
1 TCAACTCATAAAAGCTTACTATTTTAACCTCGTTAGAGCTTACCATT
* * *
71428696 TCAACTCATAAAAGCTTACTATTTTCAGCTCGTTAGAGCTTACCGTT
1 TCAACTCATAAAAGCTTACTATTTTAACCTCGTTAGAGCTTACCATT
*
71428743 TCAGCTCA-ATAAAGCTTACT
1 TCAACTCATA-AAAGCTTACT
71428763 GTCCATCAAC
Statistics
Matches: 58, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
46 1 0.02
47 57 0.98
ACGTcount: A:0.28, C:0.23, G:0.13, T:0.36
Consensus pattern (47 bp):
TCAACTCATAAAAGCTTACTATTTTAACCTCGTTAGAGCTTACCATT
Found at i:71428715 original size:23 final size:23
Alignment explanation
Indices: 71428649--71428738 Score: 99
Period size: 24 Copynumber: 3.8 Consensus size: 23
71428639 TATCGATATA
71428649 TCAACTCGTAAGAGCTTACTATT
1 TCAACTCGTAAGAGCTTACTATT
* **
71428672 TTAACCTCGTTGGAGCTTACTATT
1 TCAA-CTCGTAAGAGCTTACTATT
* *
71428696 TCAACTCATAAAAGCTTACTATTT
1 TCAACTCGTAAGAGCTTACTA-TT
* *
71428720 TCAGCTCGTTAGAGCTTAC
1 TCAACTCGTAAGAGCTTAC
71428739 CGTTTCAGCT
Statistics
Matches: 53, Mismatches: 12, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
23 16 0.30
24 37 0.70
ACGTcount: A:0.28, C:0.22, G:0.13, T:0.37
Consensus pattern (23 bp):
TCAACTCGTAAGAGCTTACTATT
Found at i:71428758 original size:23 final size:23
Alignment explanation
Indices: 71428718--71428761 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
71428708 AGCTTACTAT
** *
71428718 TTTCAGCTCGTTAGAGCTTACCG
1 TTTCAGCTCAATAAAGCTTACCG
71428741 TTTCAGCTCAATAAAGCTTAC
1 TTTCAGCTCAATAAAGCTTAC
71428762 TGTCCATCAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.34
Consensus pattern (23 bp):
TTTCAGCTCAATAAAGCTTACCG
Found at i:71433749 original size:49 final size:49
Alignment explanation
Indices: 71433693--71434344 Score: 1026
Period size: 49 Copynumber: 13.6 Consensus size: 49
71433683 TATTTGAATA
* *
71433693 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAACGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
71433742 AATGTGAAAGTGTATATATATGTGACAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
71433791 AATGTGAAAGTTTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
71433840 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
71433887 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
71433934 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
71433983 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
71434032 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
71434079 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
71434128 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
71434177 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
71434224 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * * *
71434271 AATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
71434318 GATGTGAAAGTGTATA-A-ATGTGATAAG
1 AATGTGAAAGTGTATATATATGTGATAAG
71434345 TCCCGAAGGG
Statistics
Matches: 570, Mismatches: 27, Indels: 14
0.93 0.04 0.02
Matches are distributed among these distances:
47 277 0.49
48 1 0.00
49 292 0.51
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.29
Consensus pattern (49 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:71433885 original size:22 final size:22
Alignment explanation
Indices: 71433857--71433932 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
71433847 AAGTGTATAT
71433857 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * ***
71433879 ATGTGATGAATG-TGAAAGTGTATA
1 ATGTGAT-AAGGCCG-AA-TGGCCA
71433903 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
71433926 ATGTGAT
1 ATGTGAT
71433933 GAATGTGAAA
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 15 0.38
23 8 0.21
24 8 0.21
25 8 0.21
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:71434001 original size:145 final size:145
Alignment explanation
Indices: 71433693--71434344 Score: 1064
Period size: 145 Copynumber: 4.5 Consensus size: 145
71433683 TATTTGAATA
*
71433693 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAACGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG--TA
* *
71433758 TATATGTGACAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTTTATATATATGTGATAAGGCC
64 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
* *
71433823 TAATGGCCGATGTGATG
129 GAATGGCCAATGTGATG
*
71433840 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATA
71433903 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGA
66 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGA
71433968 ATGGCCAATGTGATG
131 ATGGCCAATGTGATG
*
71433983 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATA
71434048 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGA
66 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGA
71434113 ATGGCCAATGTGATG
131 ATGGCCAATGTGATG
*
71434128 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATA
* * * *
71434193 TATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTA
66 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGA
*
71434256 ATGGCCGATGTGATG
131 ATGGCCAATGTGATG
* * * * * *
71434271 AATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
71434334 AATGTGATAAG
66 TATGTGATAAG
71434345 TCCCGAAGGG
Statistics
Matches: 482, Mismatches: 21, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
141 54 0.11
143 137 0.28
145 279 0.58
147 12 0.02
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.29
Consensus pattern (145 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATA
TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGA
ATGGCCAATGTGATG
Found at i:71436534 original size:37 final size:37
Alignment explanation
Indices: 71436471--71436544 Score: 105
Period size: 37 Copynumber: 2.0 Consensus size: 37
71436461 AATCCGAGTT
*
71436471 TAAAGACCCGCTGACTATATGAAGAGATTATGTCCGG
1 TAAAGACCCGATGACTATATGAAGAGATTATGTCCGG
* *
71436508 TAAAGACCCGATGGCTATGT-ACAGAGATTATGTCCGG
1 TAAAGACCCGATGACTATATGA-AGAGATTATGTCCGG
71436545 ATTAAAATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
36 1 0.03
37 32 0.97
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.24
Consensus pattern (37 bp):
TAAAGACCCGATGACTATATGAAGAGATTATGTCCGG
Found at i:71436713 original size:40 final size:40
Alignment explanation
Indices: 71436598--71436904 Score: 474
Period size: 40 Copynumber: 7.7 Consensus size: 40
71436588 AGGTCTCGAC
*
71436598 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
71436637 GATGTATCCGGGCTAAGT-CCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
71436676 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
71436716 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
71436756 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
71436796 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * ** *
71436836 GATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * *
71436876 GTTATATCCGGGCTAGGTCCCGAAGAGCA
1 GATGTATCCGGGCTAAGTCCCGAAGAGCA
71436905 ATCATGCTGG
Statistics
Matches: 250, Mismatches: 16, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
39 43 0.17
40 207 0.83
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
Found at i:71440400 original size:49 final size:49
Alignment explanation
Indices: 71440344--71441007 Score: 1042
Period size: 49 Copynumber: 13.6 Consensus size: 49
71440334 TATTTGAATA
* *
71440344 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAACGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
71440393 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
71440442 AATGTGAAAGTTTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
71440491 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
71440538 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
71440587 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
71440636 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
71440685 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
71440732 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
71440781 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGAT-------AA-GGCCGAATGGCCAATGTGATG
* *
71440838 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
71440887 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * * *
71440934 AATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
71440981 GATGTGAAAGTGTATA-A-ATGTGATAAG
1 AATGTGAAAGTGTATATATATGTGATAAG
71441008 TCCCGAAGGG
Statistics
Matches: 578, Mismatches: 23, Indels: 30
0.92 0.04 0.05
Matches are distributed among these distances:
47 185 0.32
48 1 0.00
49 341 0.59
50 2 0.00
56 2 0.00
57 47 0.08
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.29
Consensus pattern (49 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:71440536 original size:145 final size:146
Alignment explanation
Indices: 71440344--71441007 Score: 1029
Period size: 145 Copynumber: 4.5 Consensus size: 146
71440334 TATTTGAATA
* *
71440344 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAACGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG-ATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
71440409 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTTTATATATATGTGATAAGGCC
65 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
* *
71440474 TAATGGCCGATGTGATG
130 GAATGGCCAATGTGATG
71440491 AATGTGAAAGTG-TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 AATGTGAAAGTGATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
71440555 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCG
66 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCG
71440620 AATGGCCAATGTGATG
131 AATGGCCAATGTGATG
* *
71440636 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
1 AATGTGAAAGTG-ATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
71440699 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
65 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
71440764 GAATGGCCAATGTGATG
130 GAATGGCCAATGTGATG
71440781 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGAATGGCCAATGTGATGAATGTGAA
1 AATGTGAAAGTG-ATATATATGTGAT-------AA-GGCCGAATGGCCAATGTGATGAATGTGAA
* *
71440846 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTG
57 AGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTG
* *
71440909 ATAAGGCCTAATGGCCGATGTGATG
122 ATAAGGCCGAATGGCCAATGTGATG
* * * * *
71440934 AATGTGAAAGTG-TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-
1 AATGTGAAAGTGATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
71440997 A-ATGTGATAAG
66 ATATGTGATAAG
71441008 TCCCGAAGGG
Statistics
Matches: 487, Mismatches: 18, Indels: 30
0.91 0.03 0.06
Matches are distributed among these distances:
141 10 0.02
142 1 0.00
143 34 0.07
144 1 0.00
145 250 0.51
147 57 0.12
151 11 0.02
152 2 0.00
153 76 0.16
155 45 0.09
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.29
Consensus pattern (146 bp):
AATGTGAAAGTGATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCG
AATGGCCAATGTGATG
Found at i:71440664 original size:194 final size:194
Alignment explanation
Indices: 71440344--71441007 Score: 1138
Period size: 194 Copynumber: 3.4 Consensus size: 194
71440334 TATTTGAATA
*
71440344 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAACGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATA
*
71440409 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTTTATATATATGTGATAAGGCC
66 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
71440474 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
131 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
71440538 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATA
71440603 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
66 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
71440668 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
131 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
71440732 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATA
71440797 TATATGTGATAAGGCCGAATGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTG
66 TATATGTGAT-------AA-GGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTG
* *
71440862 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA
123 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAA
71440927 TGTGATG
188 TGTGATG
* * * *
71440934 AATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATA
71440997 -A-ATGTGATAAG
66 TATATGTGATAAG
71441008 TCCCGAAGGG
Statistics
Matches: 452, Mismatches: 10, Indels: 20
0.94 0.02 0.04
Matches are distributed among these distances:
190 1 0.00
191 2 0.00
194 266 0.59
198 7 0.02
199 1 0.00
200 46 0.10
201 2 0.00
202 127 0.28
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.29
Consensus pattern (194 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATA
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:71440823 original size:57 final size:56
Alignment explanation
Indices: 71440760--71440952 Score: 247
Period size: 57 Copynumber: 3.7 Consensus size: 56
71440750 TATGTGATAA
71440760 GGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAAT
1 GGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC-AAT
71440817 GGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC--T
1 GGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCAAT
*
71440871 -----AATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC--T
1 GGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCAAT
*
71440918 -----AATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 GGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
71440953 GTGACAGGGC
Statistics
Matches: 133, Mismatches: 1, Indels: 12
0.91 0.01 0.08
Matches are distributed among these distances:
47 47 0.35
49 32 0.24
54 1 0.01
57 53 0.40
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (56 bp):
GGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCAAT
Found at i:71440835 original size:106 final size:103
Alignment explanation
Indices: 71440344--71441007 Score: 921
Period size: 96 Copynumber: 6.8 Consensus size: 103
71440334 TATTTGAATA
* *
71440344 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAACGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
71440409 TATATGTGATAA-----GGCCGAATGGCCAATGTGATG
66 TATATGTGATAAGGCCTGGCCGAATGGCCAATGTGATG
* * *
71440442 AATGTGAAAGTTTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
71440505 TATATGTGATAA-----GGCCGAATGGCCAATGTGATG
66 TATATGTGATAAGGCCTGGCCGAATGGCCAATGTGATG
71440538 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
71440603 TATATGTGATAA-----GGCCGAATGGCCAATGTGATG
66 TATATGTGATAAGGCCTGGCCGAATGGCCAATGTGATG
* *
71440636 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
71440699 TATATGTGATAA-----GGCCGAATGGCCAATGTGATG
66 TATATGTGATAAGGCCTGGCCGAATGGCCAATGTGATG
71440732 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
71440797 TATATGTGATAAGGCCGAATGGCCGAATGGCCAATGTGATG
66 TATATGTGATAAGGCC---TGGCCGAATGGCCAATGTGATG
* *
71440838 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
71440901 TATATGTGATAAGGCCT-----AATGGCCGATGTGATG
66 TATATGTGATAAGGCCTGGCCGAATGGCCAATGTGATG
* * * * *
71440934 AATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
71440997 -A-ATGTGATAAG
66 TATATGTGATAAG
71441008 TCCCGAAGGG
Statistics
Matches: 532, Mismatches: 20, Indels: 32
0.91 0.03 0.05
Matches are distributed among these distances:
94 50 0.09
95 1 0.00
96 216 0.41
98 166 0.31
101 1 0.00
104 18 0.03
106 80 0.15
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.29
Consensus pattern (103 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
TATATGTGATAAGGCCTGGCCGAATGGCCAATGTGATG
Found at i:71440993 original size:94 final size:95
Alignment explanation
Indices: 71440817--71441007 Score: 276
Period size: 94 Copynumber: 2.0 Consensus size: 95
71440807 AAGGCCGAAT
* * * *
71440817 GGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATG
1 GGCCGAATGGCCAATGTGATGAATGTGAAAGTG-ATATATATGTGACAAGGCCGAATGGCCAACG
*
71440882 TGATGAATGTGAAAGTGTATATATGTGATAA
65 TGATGAATGTGAAAGTGTATAAATGTGATAA
* * * *
71440913 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGACAGGGCCGAGTGGCCAACGT
1 GGCCGAATGGCCAATGTGATGAATGTGAAAGTGATATATATGTGACAAGGCCGAATGGCCAACGT
*
71440977 GATGGATGTGAAAGTGTATAAATGTGATAA
66 GATGAATGTGAAAGTGTATAAATGTGATAA
71441007 G
1 G
71441008 TCCCGAAGGG
Statistics
Matches: 85, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
94 54 0.64
96 31 0.36
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.27
Consensus pattern (95 bp):
GGCCGAATGGCCAATGTGATGAATGTGAAAGTGATATATATGTGACAAGGCCGAATGGCCAACGT
GATGAATGTGAAAGTGTATAAATGTGATAA
Found at i:71446836 original size:43 final size:44
Alignment explanation
Indices: 71446771--71446873 Score: 156
Period size: 43 Copynumber: 2.4 Consensus size: 44
71446761 TTCAACGAAT
*
71446771 TCGCATACTTAGTGCC-GATTAATTAGCTGAAACTATAATTGTA
1 TCGCATACTTAGTGCCAGATTAATTAGCCGAAACTATAATTGTA
**
71446814 TCGCATACTTAGTGCCAG-TTAATTAGCCGAGGCTATAATTGTA
1 TCGCATACTTAGTGCCAGATTAATTAGCCGAAACTATAATTGTA
*
71446857 TCGCACACTTAGTGCCA
1 TCGCATACTTAGTGCCA
71446874 ATACATTAAA
Statistics
Matches: 55, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
43 54 0.98
44 1 0.02
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.32
Consensus pattern (44 bp):
TCGCATACTTAGTGCCAGATTAATTAGCCGAAACTATAATTGTA
Found at i:71454130 original size:20 final size:20
Alignment explanation
Indices: 71454084--71454134 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
71454074 CAACGGGCAT
*
71454084 AAATACTATTTATATGGATG
1 AAATACTGTTTATATGGATG
71454104 AAATACTGTTTATATGGATG
1 AAATACTGTTTATATGGATG
**
71454124 AGCTACTGTTT
1 AAATACTGTTT
71454135 GCAAATGGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.33, C:0.08, G:0.18, T:0.41
Consensus pattern (20 bp):
AAATACTGTTTATATGGATG
Found at i:71456224 original size:23 final size:23
Alignment explanation
Indices: 71456193--71456435 Score: 269
Period size: 23 Copynumber: 10.6 Consensus size: 23
71456183 CATCTCAGTC
71456193 GTAGCTTCGGCTACAATATAGTG
1 GTAGCTTCGGCTACAATATAGTG
* * *
71456216 ATAGTTTCGGCTAC-ATCTCAGTG
1 GTAGCTTCGGCTACAATAT-AGTG
71456239 GTAGCTTCGGCTACAATATAGTG
1 GTAGCTTCGGCTACAATATAGTG
* * *
71456262 ATAGCTTTGGCTAC-ATCTCAGTG
1 GTAGCTTCGGCTACAATAT-AGTG
71456285 GTAGCTTCGGCTACAATATAGTG
1 GTAGCTTCGGCTACAATATAGTG
** *
71456308 GTAGCTTTTGCTAC-ATCTCAGTG
1 GTAGCTTCGGCTACAATAT-AGTG
*
71456331 GTAGCTTCGGCTACAATACAGTG
1 GTAGCTTCGGCTACAATATAGTG
** *
71456354 GTAGCTTTTGCTAC-ATCTCAGTG
1 GTAGCTTCGGCTACAATAT-AGTG
*
71456377 GTAGCTTCGGCTACAATACAGTG
1 GTAGCTTCGGCTACAATATAGTG
**
71456400 GTAGCTTCGGCTACGTTATAGTG
1 GTAGCTTCGGCTACAATATAGTG
*
71456423 ATAGCTTCGGCTA
1 GTAGCTTCGGCTA
71456436 TATTACAGTC
Statistics
Matches: 181, Mismatches: 31, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
22 11 0.06
23 160 0.88
24 10 0.06
ACGTcount: A:0.23, C:0.20, G:0.25, T:0.33
Consensus pattern (23 bp):
GTAGCTTCGGCTACAATATAGTG
Found at i:71456245 original size:46 final size:46
Alignment explanation
Indices: 71456178--71456435 Score: 385
Period size: 46 Copynumber: 5.6 Consensus size: 46
71456168 GGAATCTATA
* *
71456178 GGCTACATCTCAGTCGTAGCTTCGGCTACAATATAGTGATAG-TTT
1 GGCTACATCTCAGTGGTAGCTTCGGCTACAATATAGTGGTAGCTTT
*
71456223 CGGCTACATCTCAGTGGTAGCTTCGGCTACAATATAGTGATAGCTTT
1 -GGCTACATCTCAGTGGTAGCTTCGGCTACAATATAGTGGTAGCTTT
71456270 GGCTACATCTCAGTGGTAGCTTCGGCTACAATATAGTGGTAGCTTT
1 GGCTACATCTCAGTGGTAGCTTCGGCTACAATATAGTGGTAGCTTT
* *
71456316 TGCTACATCTCAGTGGTAGCTTCGGCTACAATACAGTGGTAGCTTT
1 GGCTACATCTCAGTGGTAGCTTCGGCTACAATATAGTGGTAGCTTT
* * *
71456362 TGCTACATCTCAGTGGTAGCTTCGGCTACAATACAGTGGTAGCTTC
1 GGCTACATCTCAGTGGTAGCTTCGGCTACAATATAGTGGTAGCTTT
* * *
71456408 GGCTACGT-TATAGTGATAGCTTCGGCTA
1 GGCTACATCT-CAGTGGTAGCTTCGGCTA
71456436 TATTACAGTC
Statistics
Matches: 201, Mismatches: 9, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
45 1 0.00
46 197 0.98
47 3 0.01
ACGTcount: A:0.22, C:0.21, G:0.24, T:0.32
Consensus pattern (46 bp):
GGCTACATCTCAGTGGTAGCTTCGGCTACAATATAGTGGTAGCTTT
Found at i:71459270 original size:35 final size:35
Alignment explanation
Indices: 71459231--71459297 Score: 134
Period size: 35 Copynumber: 1.9 Consensus size: 35
71459221 CAATATGGTG
71459231 GTTTACCTACTACCTCAGGAAATTCATTTTCCTTA
1 GTTTACCTACTACCTCAGGAAATTCATTTTCCTTA
71459266 GTTTACCTACTACCTCAGGAAATTCATTTTCC
1 GTTTACCTACTACCTCAGGAAATTCATTTTCC
71459298 CTACATTTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.25, C:0.27, G:0.09, T:0.39
Consensus pattern (35 bp):
GTTTACCTACTACCTCAGGAAATTCATTTTCCTTA
Found at i:71462931 original size:38 final size:38
Alignment explanation
Indices: 71462850--71463038 Score: 261
Period size: 38 Copynumber: 4.9 Consensus size: 38
71462840 GAATCCAGTC
* * *
71462850 ACCAGCACAAAGCCTGCGGAACTTTAAGCCCGGATATAGT
1 ACCAGCACGAAGCCTGCGGGA-TTTAA-CCCGGATATATT
* * *
71462890 ACCAGCACTAAGCCTACAGGATTTAACCCGGATATATT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATT
*
71462928 ACCAGTACGAAGCCTGCGGGATTTAACCCGGATATATT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATT
* *
71462966 ACCAGCACGAAGCCTACGGGACTTAACCCGGATATATT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATT
* *
71463004 ACCAGCACGAAGCCTGCGGGACTTAACTCGGATAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
71463039 GTATCGAGTG
Statistics
Matches: 135, Mismatches: 14, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
38 113 0.84
39 5 0.04
40 17 0.13
ACGTcount: A:0.31, C:0.27, G:0.22, T:0.20
Consensus pattern (38 bp):
ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATT
Found at i:71470676 original size:38 final size:38
Alignment explanation
Indices: 71470595--71470745 Score: 203
Period size: 38 Copynumber: 3.9 Consensus size: 38
71470585 AAATCCAGTC
* * *
71470595 ACCAGCACAAAGCCTGCAGAACTTTAAGCCCGGATATAGT
1 ACCAGCACAAAGCCTGCGGGA-TTTAA-CCCGGATATATT
* *
71470635 ACCAGCACTAAGCCTGTGGGATTTAACCCGGATATATT
1 ACCAGCACAAAGCCTGCGGGATTTAACCCGGATATATT
*
71470673 ACCAGCACAAAGCCTGCGGGATTTAACCTGGATATATT
1 ACCAGCACAAAGCCTGCGGGATTTAACCCGGATATATT
* * *
71470711 ACCAGCACGAAGCCTGCAGGACTTAACCCGGATAT
1 ACCAGCACAAAGCCTGCGGGATTTAACCCGGATAT
71470746 GTATTGAGTG
Statistics
Matches: 99, Mismatches: 12, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
38 77 0.78
39 5 0.05
40 17 0.17
ACGTcount: A:0.32, C:0.26, G:0.21, T:0.21
Consensus pattern (38 bp):
ACCAGCACAAAGCCTGCGGGATTTAACCCGGATATATT
Found at i:71472369 original size:40 final size:40
Alignment explanation
Indices: 71472336--71472480 Score: 272
Period size: 40 Copynumber: 3.6 Consensus size: 40
71472326 CTCGCTCAAA
*
71472336 TGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAT
1 TGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACACAAT
71472376 TGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACACAAT
1 TGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACACAAT
*
71472416 TGCCTTCGGGACTTGGCCCGGTTATAGTAACTCACACAAT
1 TGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACACAAT
71472456 TGCCTTCGGGACTTAGCCCGGTTAT
1 TGCCTTCGGGACTTAGCCCGGTTAT
71472481 CAATCCGAAT
Statistics
Matches: 102, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 102 1.00
ACGTcount: A:0.21, C:0.28, G:0.23, T:0.28
Consensus pattern (40 bp):
TGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACACAAT
Found at i:71477328 original size:39 final size:39
Alignment explanation
Indices: 71477274--71477448 Score: 154
Period size: 40 Copynumber: 4.4 Consensus size: 39
71477264 AAACCAAGTA
** *
71477274 CCTTCGGGGTTTAGCCGAATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCGAATATAG-TAACTCGCACAAATG
** *
71477313 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAG-CCGAATATAGTAACTCGCACAAATG
** * * *
71477353 CCTTCGGGACTTAGCCCGGTTATAGTAACTCACACAATTA
1 CCTTCGGGACTTAG-CCGAATATAGTAACTCGCACAAATG
* * ** * *
71477393 CTTTCGGGACTTGGCCCGGTTATAGTAACTCGCACAATTA
1 CCTTCGGGACTTAG-CCGAATATAGTAACTCGCACAAATG
71477433 CCTTCGGGACTTAGCC
1 CCTTCGGGACTTAGCC
71477449 CGGTTATCAA
Statistics
Matches: 121, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
39 15 0.12
40 106 0.88
ACGTcount: A:0.23, C:0.27, G:0.22, T:0.28
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCGAATATAGTAACTCGCACAAATG
Found at i:71477355 original size:40 final size:40
Alignment explanation
Indices: 71477313--71477455 Score: 250
Period size: 40 Copynumber: 3.6 Consensus size: 40
71477303 CGCTCAAATG
*
71477313 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTA
*
71477353 CCTTCGGGACTTAGCCCGGTTATAGTAACTCACACAATTA
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTA
* *
71477393 CTTTCGGGACTTGGCCCGGTTATAGTAACTCGCACAATTA
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTA
71477433 CCTTCGGGACTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
71477456 CAATCCGAAT
Statistics
Matches: 96, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 96 1.00
ACGTcount: A:0.22, C:0.27, G:0.22, T:0.29
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTA
Found at i:71479168 original size:27 final size:27
Alignment explanation
Indices: 71479113--71479434 Score: 347
Period size: 27 Copynumber: 11.9 Consensus size: 27
71479103 CTAATTAATT
* * *
71479113 AAATGAATGTTTTGCCCTATATATAGTA
1 AAATGACTGTTTTGCCCT-TATGTGGTA
*
71479141 AAATGACTGTTTTTCCCTTATGTGGTA
1 AAATGACTGTTTTGCCCTTATGTGGTA
71479168 AAATGACTGTTTTGCCCTTATGTGGTA
1 AAATGACTGTTTTGCCCTTATGTGGTA
* * *
71479195 AAATGACTATTTTTCCTTTATGTGGTA
1 AAATGACTGTTTTGCCCTTATGTGGTA
* *
71479222 AAATGATTGTTTTGCCCTTACGTGGTA
1 AAATGACTGTTTTGCCCTTATGTGGTA
* **
71479249 AAATGACTGTTTTCCCCTTACATGGTA
1 AAATGACTGTTTTGCCCTTATGTGGTA
** *
71479276 AAATGACTGTTTTTTCCTTACGTGGTA
1 AAATGACTGTTTTGCCCTTATGTGGTA
* *
71479303 AAATGATTGTTTTGCCCTTATATGGTA
1 AAATGACTGTTTTGCCCTTATGTGGTA
* * ***
71479330 AAATGATTATTTTGCCCTTACAAGGTA
1 AAATGACTGTTTTGCCCTTATGTGGTA
* *
71479357 AAATGACTATTTTGCCCTTATGAGGTA
1 AAATGACTGTTTTGCCCTTATGTGGTA
* * * * *
71479384 AAATGAATATTTTGCCGTTTTATGGTA
1 AAATGACTGTTTTGCCCTTATGTGGTA
* * *
71479411 AGATGACTGTTTTACCCCTATGTG
1 AAATGACTGTTTTGCCCTTATGTG
71479435 ATGTATGTTT
Statistics
Matches: 251, Mismatches: 43, Indels: 1
0.85 0.15 0.00
Matches are distributed among these distances:
27 235 0.94
28 16 0.06
ACGTcount: A:0.26, C:0.14, G:0.18, T:0.41
Consensus pattern (27 bp):
AAATGACTGTTTTGCCCTTATGTGGTA
Found at i:71483178 original size:27 final size:27
Alignment explanation
Indices: 71483149--71483378 Score: 176
Period size: 27 Copynumber: 8.5 Consensus size: 27
71483139 CTTATTAATT
*
71483149 AAATAACTGTTTTGCCCTATATATGGTA
1 AAATGACTGTTTTGCCCT-TATATGGTA
* *
71483177 AAATGACTATTTTGCCCTTATGTGGTA
1 AAATGACTGTTTTGCCCTTATATGGTA
**
71483204 AAATGACTGTTTTGCCCTTACGTGGTA
1 AAATGACTGTTTTGCCCTTATATGGTA
* * * *
71483231 AAATGAATATTTTTCCCTTACATGGTA
1 AAATGACTGTTTTGCCCTTATATGGTA
* * **
71483258 AAATGGCTGTTATGCCCTTACGTGGTA
1 AAATGACTGTTTTGCCCTTATATGGTA
* * * *
71483285 AAACGATTGTTTTTCCCTTACGA-GGTA
1 AAATGACTGTTTTGCCCTTA-TATGGTA
** * *
71483312 AAACAACTATTTTTCCCTTATGA-GGTA
1 AAATGACTGTTTTGCCCTTAT-ATGGTA
** * *
71483339 AAATGACTGTTTTTTCGTTTTATGGTA
1 AAATGACTGTTTTGCCCTTATATGGTA
* *
71483366 AGATGATTGTTTT
1 AAATGACTGTTTT
71483379 ACCCCTATGT
Statistics
Matches: 165, Mismatches: 34, Indels: 7
0.80 0.17 0.03
Matches are distributed among these distances:
26 1 0.01
27 148 0.90
28 16 0.10
ACGTcount: A:0.27, C:0.15, G:0.18, T:0.40
Consensus pattern (27 bp):
AAATGACTGTTTTGCCCTTATATGGTA
Found at i:71483283 original size:81 final size:82
Alignment explanation
Indices: 71483153--71483349 Score: 240
Period size: 81 Copynumber: 2.4 Consensus size: 82
71483143 TTAATTAAAT
* * * * * *
71483153 AACTGTTTTGCCCTATAT-ATGGTAAAATGACTATTTTGCCCTTATGTGGTAAAATGACTGTTTT
1 AACTATTTTTCCCT-TATCATGGTAAAATGACTGTTATGCCCTTACGTGGTAAAACGACTGTTTT
* *
71483217 GCCCTTACGTGGTAAAATG
65 GCCCTTACGAGGTAAAA-C
* * *
71483236 AA-TATTTTTCCCTTA-CATGGTAAAATGGCTGTTATGCCCTTACGTGGTAAAACGATTGTTTTT
1 AACTATTTTTCCCTTATCATGGTAAAATGACTGTTATGCCCTTACGTGGTAAAACGACTGTTTTG
71483299 CCCTTACGAGGTAAAAC
66 CCCTTACGAGGTAAAAC
*
71483316 AACTATTTTTCCCTTATGA-GGTAAAATGACTGTT
1 AACTATTTTTCCCTTATCATGGTAAAATGACTGTT
71483350 TTTTCGTTTT
Statistics
Matches: 98, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
80 2 0.02
81 84 0.86
82 10 0.10
83 2 0.02
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.38
Consensus pattern (82 bp):
AACTATTTTTCCCTTATCATGGTAAAATGACTGTTATGCCCTTACGTGGTAAAACGACTGTTTTG
CCCTTACGAGGTAAAAC
Found at i:71483330 original size:54 final size:54
Alignment explanation
Indices: 71483149--71483352 Score: 212
Period size: 54 Copynumber: 3.8 Consensus size: 54
71483139 CTTATTAATT
* ** * * *
71483149 AAATAACTGTTTTGCCCTATATATGGTAAAATGACTATTTTGCCCTTATGTGGTA
1 AAATGACTGTTTTGCCCT-TACGTGGTAAAATGACTATTTTTCCCTTACGAGGTA
*
71483204 AAATGACTGTTTTGCCCTTACGTGGTAAAATGAATATTTTTCCCTTAC-ATGGTA
1 AAATGACTGTTTTGCCCTTACGTGGTAAAATGACTATTTTTCCCTTACGA-GGTA
* * * * *
71483258 AAATGGCTGTTATGCCCTTACGTGGTAAAACGATTGTTTTTCCCTTACGAGGTA
1 AAATGACTGTTTTGCCCTTACGTGGTAAAATGACTATTTTTCCCTTACGAGGTA
** * * * * *
71483312 AAACAACTATTTTTCCCTTATGAGGTAAAATGACTGTTTTT
1 AAATGACTGTTTTGCCCTTACGTGGTAAAATGACTATTTTT
71483353 TCGTTTTATG
Statistics
Matches: 125, Mismatches: 22, Indels: 5
0.82 0.14 0.03
Matches are distributed among these distances:
54 107 0.86
55 18 0.14
ACGTcount: A:0.28, C:0.16, G:0.17, T:0.39
Consensus pattern (54 bp):
AAATGACTGTTTTGCCCTTACGTGGTAAAATGACTATTTTTCCCTTACGAGGTA
Found at i:71484579 original size:39 final size:39
Alignment explanation
Indices: 71484550--71484673 Score: 162
Period size: 39 Copynumber: 3.2 Consensus size: 39
71484540 AGTGCGTAGT
71484550 CTGCGGACCTTAAGTCC-GGTTATAATTCCAGCACATAGC
1 CTGCGGACCTTAAGTCCAGG-TATAATTCCAGCACATAGC
*
71484589 CTGCGGACCTTAAGTCCAGGTATAATTCCAGCATATAGC
1 CTGCGGACCTTAAGTCCAGGTATAATTCCAGCACATAGC
* * * *
71484628 CTGCGGGTCTTTAAG-CCCGGATATAATTCCAGCATATAGC
1 CTGC-GGACCTTAAGTCCAGG-TATAATTCCAGCACATAGC
71484668 CTGCGG
1 CTGCGG
71484674 GTCTTTAAGC
Statistics
Matches: 78, Mismatches: 4, Indels: 6
0.89 0.05 0.07
Matches are distributed among these distances:
39 45 0.58
40 33 0.42
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (39 bp):
CTGCGGACCTTAAGTCCAGGTATAATTCCAGCACATAGC
Found at i:71484653 original size:40 final size:40
Alignment explanation
Indices: 71484559--71484690 Score: 187
Period size: 40 Copynumber: 3.3 Consensus size: 40
71484549 TCTGCGGACC
* * * * *
71484559 TTAAGTCCGGTTATAATTCCAGCACATAGCCTGC-GGACC
1 TTAAGCCCGGATATAATTCCAGCATATAGCCTGCGGGTCT
*
71484598 TTAAGTCCAGG-TATAATTCCAGCATATAGCCTGCGGGTCT
1 TTAAG-CCCGGATATAATTCCAGCATATAGCCTGCGGGTCT
71484638 TTAAGCCCGGATATAATTCCAGCATATAGCCTGCGGGTCT
1 TTAAGCCCGGATATAATTCCAGCATATAGCCTGCGGGTCT
71484678 TTAAGCCCGGATA
1 TTAAGCCCGGATA
71484691 CACATCAAAT
Statistics
Matches: 84, Mismatches: 6, Indels: 5
0.88 0.06 0.05
Matches are distributed among these distances:
39 31 0.37
40 53 0.63
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.27
Consensus pattern (40 bp):
TTAAGCCCGGATATAATTCCAGCATATAGCCTGCGGGTCT
Found at i:71492525 original size:38 final size:38
Alignment explanation
Indices: 71492482--71492595 Score: 219
Period size: 38 Copynumber: 3.0 Consensus size: 38
71492472 TTCACCCTTT
71492482 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
*
71492520 TTCATTTCTTTTGGCCGAAAATTATAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
71492558 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
71492596 GGAGTTCTTG
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 74 1.00
ACGTcount: A:0.32, C:0.12, G:0.24, T:0.32
Consensus pattern (38 bp):
TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
Found at i:71493874 original size:40 final size:40
Alignment explanation
Indices: 71493780--71493924 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
71493770 TACTCGAATG
*
71493780 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
71493821 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
71493861 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
71493901 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
71493925 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:71497879 original size:6 final size:6
Alignment explanation
Indices: 71497861--71497948 Score: 74
Period size: 6 Copynumber: 14.3 Consensus size: 6
71497851 AAGAAACATT
* *
71497861 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATTAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* *
71497910 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
71497949 GTAAATGCAA
Statistics
Matches: 66, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
5 4 0.06
6 54 0.82
7 6 0.09
8 2 0.03
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:71497906 original size:31 final size:31
Alignment explanation
Indices: 71497870--71497948 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
71497860 TATCAGAACT
* *
71497870 AGAATCAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
71497901 AGAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
71497932 AGAATCAAAATCAGAAT
1 AGAATCAGAATCAGAAT
71497949 GTAAATGCAA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.19
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:71498407 original size:27 final size:27
Alignment explanation
Indices: 71498368--71498732 Score: 450
Period size: 27 Copynumber: 13.6 Consensus size: 27
71498358 TACCTCACAA
*
71498368 GGTATCTCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
71498395 GGTATTTCAGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* * *
71498422 GGTATTTCAGTATTTCTACCCTACAAG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
71498449 GGTATTTCGGTAATTCTACCCTATAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
71498476 GGTATTCCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
71498503 GGTA-TTGGGATAATTCTACCCTACAGG
1 GGTATTTCGG-TAATTCTACCCTACAGG
71498530 GGTATTTCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
71498557 GATATTCCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
71498584 GGTATTTCGGTAATTCTACCCTACA-G
1 GGTATTTCGGTAATTCTACCCTACAGG
* * * *
71498610 GGTATTGCGATAATTCAACCCTATAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* **
71498637 GGTATTTCGGTAATTTTACAAGT-CAGG
1 GGTATTTCGGTAATTCTAC-CCTACAGG
** * **
71498664 GGTATTTTAGTAATTTTA-CAAACCAGG
1 GGTATTTCGGTAATTCTACCCTA-CAGG
* *
71498691 GGTATTTTGGTAATTCTATCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
71498718 GGTATTTCAGTAATT
1 GGTATTTCGGTAATT
71498733 TCACAATCGA
Statistics
Matches: 292, Mismatches: 39, Indels: 14
0.85 0.11 0.04
Matches are distributed among these distances:
26 25 0.09
27 260 0.89
28 7 0.02
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.34
Consensus pattern (27 bp):
GGTATTTCGGTAATTCTACCCTACAGG
Found at i:71498745 original size:27 final size:26
Alignment explanation
Indices: 71498634--71498745 Score: 84
Period size: 27 Copynumber: 4.2 Consensus size: 26
71498624 TCAACCCTAT
* *
71498634 AGGGGTATTTCGGTAATTTTACAAGTC
1 AGGGGTATTTCAGTAATTTCACAA-TC
* * *
71498661 AGGGGTATTTTAGTAATTTTACAAACC
1 AGGGGTATTTCAGTAATTTCAC-AATC
** *
71498688 AGGGGTATTTTGGTAA-TTCTATC-CTAC
1 AGGGGTATTTCAGTAATTTC-A-CAAT-C
71498715 AGGGGTATTTCAGTAATTTCACAATC
1 AGGGGTATTTCAGTAATTTCACAATC
71498741 GAGGG
1 -AGGG
71498746 TAAAACGATA
Statistics
Matches: 68, Mismatches: 10, Indels: 14
0.74 0.11 0.15
Matches are distributed among these distances:
26 4 0.06
27 58 0.85
28 6 0.09
ACGTcount: A:0.28, C:0.12, G:0.24, T:0.36
Consensus pattern (26 bp):
AGGGGTATTTCAGTAATTTCACAATC
Found at i:71499272 original size:27 final size:27
Alignment explanation
Indices: 71498737--71499275 Score: 338
Period size: 27 Copynumber: 19.8 Consensus size: 27
71498727 GTAATTTCAC
* *
71498737 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
*
71498764 AA-CTGCGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTTTGTA
* *
71498791 AATTGAGGGTAAAATGGTAATTTTATA
1 AATCGAGGGTAAAATGGTAATTTTGTA
** * *
71498818 AATTAAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
* * * *
71498845 AATCGACGGTGAAACGGTAA-TTTATA
1 AATCGAGGGTAAAATGGTAATTTTGTA
* **
71498871 AATCGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAATGGTAATTTTGTA
* ** ** *
71498898 AATCGAGGG-CATTTCAATAATTTT-AA
1 AATCGAGGGTAAAAT-GGTAATTTTGTA
* * *** * *
71498924 AATAGACGGTATTTTAGTAATTTTATA
1 AATCGAGGGTAAAATGGTAATTTTGTA
* *** *
71498951 AACCG-GTGGTACTTTGGTAATTTTACT-
1 AATCGAG-GGTAAAATGGTAATTTT-GTA
* ***
71498978 GATCGAGGGTATTTTGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
* ** **
71499005 AA-CTAAGGGT-ATTTCAATAATTTTGTA
1 AATC-GAGGGTAAAAT-GGTAATTTTGTA
* ** *
71499032 AATCGAGGATAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
* * * *
71499059 AATCGAGGGTAAAACGATAATTCTATA
1 AATCGAGGGTAAAATGGTAATTTTGTA
71499086 AATCGAGGGTAAAATGGTAACGGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAA---T--TT-TGTA
* * *
71499119 AATCGAGGGTAAAATAGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTTTGTA
* * *
71499146 AATCGAGGGTCAAACGGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
* * *
71499173 AATCGAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
* * *
71499200 AATCAAGGGTAAAATAGTAAATTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
*
71499227 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
71499254 AATCGAGGGTAAAATGGTAATT
1 AATCGAGGGTAAAATGGTAATT
71499276 CTATCTTATT
Statistics
Matches: 408, Mismatches: 84, Indels: 40
0.77 0.16 0.08
Matches are distributed among these distances:
26 46 0.11
27 332 0.81
28 5 0.01
30 2 0.00
32 1 0.00
33 22 0.05
ACGTcount: A:0.38, C:0.08, G:0.22, T:0.32
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTTTGTA
Found at i:71499322 original size:27 final size:25
Alignment explanation
Indices: 71499292--71499376 Score: 80
Period size: 27 Copynumber: 3.2 Consensus size: 25
71499282 TATTTCAGTG
71499292 ATTTTACAAATCGAGGATATTTGGGTA
1 ATTTTACAAATCGAGG-TATTT-GGTA
* *
71499319 ATTTTATAAATCGGGGGTACTTTGGTA
1 ATTTTACAAATC-GAGGTA-TTTGGTA
* *
71499346 ATTTTACAAGTCGAAGGTATTTCAGTA
1 ATTTTACAAATCG-AGGTATTT-GGTA
71499373 ATTT
1 ATTT
71499377 GGTAAACTAA
Statistics
Matches: 48, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
26 4 0.08
27 38 0.79
28 6 0.12
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (25 bp):
ATTTTACAAATCGAGGTATTTGGTA
Found at i:71508492 original size:27 final size:27
Alignment explanation
Indices: 71508462--71508639 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
71508452 ATATTGAGTC
* * * *
71508462 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
71508489 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
71508516 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
71508544 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
71508571 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
71508598 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
71508625 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
71508640 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:71508601 original size:82 final size:81
Alignment explanation
Indices: 71508483--71508638 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
71508473 TGCTATATAA
* *
71508483 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
71508548 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
71508565 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
71508629 CACTTAGTGC
65 CACTTAGTGC
71508639 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:71511357 original size:46 final size:46
Alignment explanation
Indices: 71511301--71511425 Score: 205
Period size: 46 Copynumber: 2.7 Consensus size: 46
71511291 TGGTTGAGCA
71511301 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* *
71511347 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * *
71511393 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTT
71511426 TGGGGCGGGT
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.26, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:71514089 original size:31 final size:31
Alignment explanation
Indices: 71514051--71514114 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
71514041 CCTTTTCATA
71514051 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
71514082 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
71514113 TT
1 TT
71514115 ACTGTAAATG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:71514383 original size:23 final size:23
Alignment explanation
Indices: 71514308--71514424 Score: 146
Period size: 23 Copynumber: 5.0 Consensus size: 23
71514298 GCTTTATCAT
*
71514308 ATAACTGGAGGCCT-AGCCACTTTGA
1 ATAACTGG-GGCATAAGCC-CTTT-A
* *
71514333 ATAACTAGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCC-TTTA
71514357 ATAACTGGGGCATAAGCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTA
* *
71514380 ATAACTGGGGAATAAGTCCTTTA
1 ATAACTGGGGCATAAGCCCTTTA
71514403 ATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTT
71514425 TACACTTCCT
Statistics
Matches: 81, Mismatches: 9, Indels: 6
0.84 0.09 0.06
Matches are distributed among these distances:
23 45 0.56
24 22 0.27
25 14 0.17
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (23 bp):
ATAACTGGGGCATAAGCCCTTTA
Found at i:71514501 original size:20 final size:20
Alignment explanation
Indices: 71514476--71514514 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
71514466 TATGATTACA
71514476 TCATGTGCATATCATACATG
1 TCATGTGCATATCATACATG
71514496 TCATGTGCATATCATACAT
1 TCATGTGCATATCATACAT
71514515 ACCATGTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.36
Consensus pattern (20 bp):
TCATGTGCATATCATACATG
Found at i:71514520 original size:20 final size:20
Alignment explanation
Indices: 71514477--71514521 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
71514467 ATGATTACAT
**
71514477 CATGTGCATATCATACATGT
1 CATGTGCATATCATACATAC
71514497 CATGTGCATATCATACATAC
1 CATGTGCATATCATACATAC
71514517 CATGT
1 CATGT
71514522 TTATCAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.31, C:0.22, G:0.13, T:0.33
Consensus pattern (20 bp):
CATGTGCATATCATACATAC
Found at i:71521888 original size:39 final size:39
Alignment explanation
Indices: 71521844--71521979 Score: 164
Period size: 39 Copynumber: 3.5 Consensus size: 39
71521834 CCGGACATAC
* * * *
71521844 TTCCAGCGTGTAGCCTGTAGACCTTAAGTCCGGTTATAA
1 TTCCAGCATATAGCCTGCAGACCTTAAGTCCGGGTATAA
* *
71521883 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGGTATAA
1 TTCCAGCATATAGCCTGCAGACCTTAAGTCCGGGTATAA
* * * * *
71521922 TTCCAGCATATAGCCTGCGGGTCTTTAAGCCCGGATATAA
1 TTCCAGCATATAGCCTGC-AGACCTTAAGTCCGGGTATAA
71521962 TTCCAGCATATAGCCTGC
1 TTCCAGCATATAGCCTGC
71521980 GGGTCTTTAA
Statistics
Matches: 85, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 50 0.59
40 35 0.41
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.27
Consensus pattern (39 bp):
TTCCAGCATATAGCCTGCAGACCTTAAGTCCGGGTATAA
Found at i:71521961 original size:40 final size:40
Alignment explanation
Indices: 71521867--71521998 Score: 185
Period size: 40 Copynumber: 3.3 Consensus size: 40
71521857 CCTGTAGACC
* * * * *
71521867 TTAAGTCCGGTTATAATTCCAGCACATAGCCTGC-GGACC
1 TTAAGCCCGGATATAATTCCAGCATATAGCCTGCGGGTCT
* *
71521906 TTAAGTCCGGGTATAATTCCAGCATATAGCCTGCGGGTCT
1 TTAAGCCCGGATATAATTCCAGCATATAGCCTGCGGGTCT
71521946 TTAAGCCCGGATATAATTCCAGCATATAGCCTGCGGGTCT
1 TTAAGCCCGGATATAATTCCAGCATATAGCCTGCGGGTCT
*
71521986 TTAAGCCGGGATA
1 TTAAGCCCGGATA
71521999 CACATCAAAT
Statistics
Matches: 85, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 32 0.38
40 53 0.62
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.27
Consensus pattern (40 bp):
TTAAGCCCGGATATAATTCCAGCATATAGCCTGCGGGTCT
Found at i:71527754 original size:38 final size:38
Alignment explanation
Indices: 71527704--71527780 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
71527694 GATGATTAAC
71527704 ATATATTAGACTAAATGCAATGATCCTTAATGCAAATT
1 ATATATTAGACTAAATGCAATGATCCTTAATGCAAATT
71527742 ATATATTAGACTAAATGCAATGATCCTTAATGCAAATT
1 ATATATTAGACTAAATGCAATGATCCTTAATGCAAATT
71527780 A
1 A
71527781 ACCTAAGTAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.43, C:0.13, G:0.10, T:0.34
Consensus pattern (38 bp):
ATATATTAGACTAAATGCAATGATCCTTAATGCAAATT
Found at i:71532949 original size:40 final size:40
Alignment explanation
Indices: 71532835--71532976 Score: 166
Period size: 40 Copynumber: 3.6 Consensus size: 40
71532825 TACTCGAATG
*
71532835 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
71532876 ACATCCGGACTAAGAT-CC-AAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
71532915 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
71532955 ATAT--GGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
71532977 CTTGTGCGAG
Statistics
Matches: 88, Mismatches: 10, Indels: 9
0.82 0.09 0.08
Matches are distributed among these distances:
38 17 0.19
39 21 0.24
40 35 0.40
41 14 0.16
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:71551244 original size:13 final size:13
Alignment explanation
Indices: 71551226--71551255 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
71551216 TGTGCTCTGA
71551226 ATTCTTCCATCTC
1 ATTCTTCCATCTC
71551239 ATTCTTCCATCTC
1 ATTCTTCCATCTC
71551252 ATTC
1 ATTC
71551256 AACTCCAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.17, C:0.37, G:0.00, T:0.47
Consensus pattern (13 bp):
ATTCTTCCATCTC
Found at i:71553187 original size:40 final size:40
Alignment explanation
Indices: 71553120--71553221 Score: 150
Period size: 40 Copynumber: 2.5 Consensus size: 40
71553110 CGGGTACCTA
* * *
71553120 TCAGCTTGTGTGAGCAGCCCGAGTAGTTCCGTCCTGACTG
1 TCAGCTTGTGTGAGTAGCCCGAATAGTTACGTCCTGACTG
*
71553160 TCAGCTTGTGTGAGTAGCTCGAATAGTTACGTCCTGACTG
1 TCAGCTTGTGTGAGTAGCCCGAATAGTTACGTCCTGACTG
*
71553200 TCAGCTTGTATGAGTAGGCCCG
1 TCAGCTTGTGTGAGTA-GCCCG
71553222 TGATTAACTC
Statistics
Matches: 55, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
40 51 0.93
41 4 0.07
ACGTcount: A:0.18, C:0.24, G:0.29, T:0.29
Consensus pattern (40 bp):
TCAGCTTGTGTGAGTAGCCCGAATAGTTACGTCCTGACTG
Found at i:71558996 original size:28 final size:28
Alignment explanation
Indices: 71558933--71559030 Score: 128
Period size: 27 Copynumber: 3.5 Consensus size: 28
71558923 ATATTAAGTC
*
71558933 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
71558960 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * *
71558988 CGCACACTTAGTGCTGA-ACAATTTAAACC
1 CGCACACTTAGTGCT-ATATAA-TCAAACT
71559017 CGCACACTTAGTGC
1 CGCACACTTAGTGC
71559031 CAATCTCATG
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
27 22 0.34
28 22 0.34
29 20 0.31
ACGTcount: A:0.33, C:0.29, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:71567279 original size:28 final size:28
Alignment explanation
Indices: 71567216--71567312 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
71567206 ATATTAAGTC
*
71567216 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
71567243 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * *
71567271 CGCACACTTAGTGCTA-ACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
71567299 CGCACACTTAGTGC
1 CGCACACTTAGTGC
71567313 CAATCTCATG
Statistics
Matches: 64, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
27 25 0.39
28 39 0.61
ACGTcount: A:0.33, C:0.29, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:71573685 original size:22 final size:24
Alignment explanation
Indices: 71573655--71573698 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
71573645 TAGCATAATT
71573655 AATGAATATGAAA-T-TGATGTGG
1 AATGAATATGAAAGTATGATGTGG
*
71573677 AATGTATATGAAAGTATGATGT
1 AATGAATATGAAAGTATGATGT
71573699 TTTGGATAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 12 0.63
23 1 0.05
24 6 0.32
ACGTcount: A:0.41, C:0.00, G:0.25, T:0.34
Consensus pattern (24 bp):
AATGAATATGAAAGTATGATGTGG
Found at i:71574296 original size:20 final size:20
Alignment explanation
Indices: 71574271--71574317 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
71574261 AGGAAAATTA
*
71574271 TTCTAAATTTCCCTAAAGTT
1 TTCTAAATTGCCCTAAAGTT
71574291 TTCTAAATTGCCCTAAAGTT
1 TTCTAAATTGCCCTAAAGTT
71574311 TTCTAAA
1 TTCTAAA
71574318 GTCCTCGGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.32, C:0.19, G:0.06, T:0.43
Consensus pattern (20 bp):
TTCTAAATTGCCCTAAAGTT
Found at i:71577329 original size:43 final size:42
Alignment explanation
Indices: 71577236--71577383 Score: 170
Period size: 43 Copynumber: 3.5 Consensus size: 42
71577226 GATTACCGAG
* *
71577236 ATGTGATTACATGTAAGACCATGTTTGGGACATTGGCATTGT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGT
*
71577278 ATTGTGATTACATGTAAAACCATGTCTGGGACATTGGCATCGTT
1 A-TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCG-T
* * * * * * *
71577322 ATATGATTTCGTATAAGACCTTGTCTGGGACAGTGGCATCGAA
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCG-T
*
71577365 ATGTGATAACATGTAAGAC
1 ATGTGATTACATGTAAGAC
71577384 TATATCTAGG
Statistics
Matches: 87, Mismatches: 17, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
42 1 0.01
43 84 0.97
44 2 0.02
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.32
Consensus pattern (42 bp):
ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGT
Found at i:71578740 original size:27 final size:27
Alignment explanation
Indices: 71578706--71578892 Score: 181
Period size: 27 Copynumber: 7.1 Consensus size: 27
71578696 GTTTGCCAAG
*
71578706 TTACTGAAATACACCTGTAGGGTAAAA
1 TTACTGAAATACCCCTGTAGGGTAAAA
* * * *
71578733 TTATTGAAATACCCCTATAGGGGAGAA
1 TTACTGAAATACCCCTGTAGGGTAAAA
71578760 TTACTGAAATACCCCTGTAGGGTAAAA
1 TTACTGAAATACCCCTGTAGGGTAAAA
* *
71578787 TTAC------ACCCCCGTAGGGTAGAA
1 TTACTGAAATACCCCTGTAGGGTAAAA
* *
71578808 TTACCGAAATACCCTTGTAGGGTAAAA
1 TTACTGAAATACCCCTGTAGGGTAAAA
* * *
71578835 ATACCGAAATACCCCTGTAGGGTAGAA
1 TTACTGAAATACCCCTGTAGGGTAAAA
* * *
71578862 TTA-TCGAGATACCCTTGTGGGGTAAAA
1 TTACT-GAAATACCCCTGTAGGGTAAAA
71578889 TTAC
1 TTAC
71578893 CATTTTTCCT
Statistics
Matches: 129, Mismatches: 23, Indels: 15
0.77 0.14 0.09
Matches are distributed among these distances:
21 19 0.15
27 110 0.85
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25
Consensus pattern (27 bp):
TTACTGAAATACCCCTGTAGGGTAAAA
Found at i:71578794 original size:21 final size:21
Alignment explanation
Indices: 71578770--71578811 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
71578760 TTACTGAAAT
*
71578770 ACCCCTGTAGGGTAAAATTAC
1 ACCCCCGTAGGGTAAAATTAC
*
71578791 ACCCCCGTAGGGTAGAATTAC
1 ACCCCCGTAGGGTAAAATTAC
71578812 CGAAATACCC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.31, C:0.26, G:0.21, T:0.21
Consensus pattern (21 bp):
ACCCCCGTAGGGTAAAATTAC
Found at i:71578845 original size:75 final size:75
Alignment explanation
Indices: 71578722--71578864 Score: 196
Period size: 75 Copynumber: 1.9 Consensus size: 75
71578712 AAATACACCT
** * * *
71578722 GTAGGGTAAAATTATTGAAATACCCCTATAGGGGAGAATTACTGAAATACCCCTGTAGGGTAAAA
1 GTAGGGTAAAATTACCGAAATACCCCTATAGGGGAAAAATACCGAAATACCCCTGTAGGGTAAAA
71578787 TTACACCCCC
66 TTACACCCCC
* * * * *
71578797 GTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAAAAATACCGAAATACCCCTGTAGGGTAGAA
1 GTAGGGTAAAATTACCGAAATACCCCTATAGGGGAAAAATACCGAAATACCCCTGTAGGGTAAAA
71578862 TTA
66 TTA
71578865 TCGAGATACC
Statistics
Matches: 58, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
75 58 1.00
ACGTcount: A:0.36, C:0.18, G:0.22, T:0.24
Consensus pattern (75 bp):
GTAGGGTAAAATTACCGAAATACCCCTATAGGGGAAAAATACCGAAATACCCCTGTAGGGTAAAA
TTACACCCCC
Found at i:71578887 original size:102 final size:102
Alignment explanation
Indices: 71578706--71578892 Score: 261
Period size: 102 Copynumber: 1.8 Consensus size: 102
71578696 GTTTGCCAAG
* * **
71578706 TTACTGAAATACACCTGTAGGGTAAAATTATTGAAATACCCCTATAGGGGAGAATTACTGAAATA
1 TTACCGAAATACACCTGTAGGGTAAAAATACCGAAATACCCCTATAGGGGAGAATTACTGAAATA
71578771 CCCCTGTAGGGTAAAATTACACCCCCGTAGGGTAGAA
66 CCCCTGTAGGGTAAAATTACACCCCCGTAGGGTAGAA
* * *
71578808 TTACCGAAATAC-CCTTGTAGGGTAAAAATACCGAAATACCCCTGTAGGGTAGAATTA-TCGAGA
1 TTACCGAAATACACC-TGTAGGGTAAAAATACCGAAATACCCCTATAGGGGAGAATTACT-GAAA
* *
71578871 TACCCTTGTGGGGTAAAATTAC
64 TACCCCTGTAGGGTAAAATTAC
71578893 CATTTTTCCT
Statistics
Matches: 74, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
101 3 0.04
102 71 0.96
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25
Consensus pattern (102 bp):
TTACCGAAATACACCTGTAGGGTAAAAATACCGAAATACCCCTATAGGGGAGAATTACTGAAATA
CCCCTGTAGGGTAAAATTACACCCCCGTAGGGTAGAA
Found at i:71579278 original size:20 final size:20
Alignment explanation
Indices: 71579255--71579295 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
71579245 TGTGTGCCGT
* *
71579255 TATTGTGGGCTTCGTATCGA
1 TATTGTAGGCTTCGTACCGA
71579275 TATTGTAGGCTTCGTACCGA
1 TATTGTAGGCTTCGTACCGA
71579295 T
1 T
71579296 TATAGACCCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.17, C:0.17, G:0.27, T:0.39
Consensus pattern (20 bp):
TATTGTAGGCTTCGTACCGA
Found at i:71579516 original size:6 final size:6
Alignment explanation
Indices: 71579507--71579606 Score: 80
Period size: 6 Copynumber: 16.3 Consensus size: 6
71579497 TTGCATTCAC
* * *
71579507 ATTCTG ATTCTG ATTCAG ATTCTG -TTACCTG ATACTG ATTTTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG
* * *
71579556 -TCACCTG ATTCTG ATTCTG ATTCTG ATTCTC ATTTTG ATTCT- AGTTCTG
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG
71579605 AT
1 AT
71579607 AATGTTTCTT
Statistics
Matches: 74, Mismatches: 12, Indels: 16
0.73 0.12 0.16
Matches are distributed among these distances:
5 4 0.05
6 61 0.82
7 7 0.09
8 2 0.03
ACGTcount: A:0.19, C:0.18, G:0.15, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:71579538 original size:25 final size:25
Alignment explanation
Indices: 71579510--71579580 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
71579500 CATTCACATT
* *
71579510 CTGATTCTGATTCAGATTCTGTTAC
1 CTGATTCTGATTCTGATTCTGTCAC
* *
71579535 CTGATACTGATTTTGATTCTGTCAC
1 CTGATTCTGATTCTGATTCTGTCAC
71579560 CTGATTCTGATTCTGATTCTG
1 CTGATTCTGATTCTGATTCTG
71579581 ATTCTCATTT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.18, C:0.20, G:0.17, T:0.45
Consensus pattern (25 bp):
CTGATTCTGATTCTGATTCTGTCAC
Found at i:71580593 original size:32 final size:32
Alignment explanation
Indices: 71580557--71580623 Score: 134
Period size: 32 Copynumber: 2.1 Consensus size: 32
71580547 CTTCAGTGAA
71580557 TAAGTGTTGTATGTATGAGATGTTTCAAGTTC
1 TAAGTGTTGTATGTATGAGATGTTTCAAGTTC
71580589 TAAGTGTTGTATGTATGAGATGTTTCAAGTTC
1 TAAGTGTTGTATGTATGAGATGTTTCAAGTTC
71580621 TAA
1 TAA
71580624 TTGAAGTGTG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.27, C:0.06, G:0.24, T:0.43
Consensus pattern (32 bp):
TAAGTGTTGTATGTATGAGATGTTTCAAGTTC
Found at i:71581649 original size:27 final size:27
Alignment explanation
Indices: 71581615--71581834 Score: 242
Period size: 27 Copynumber: 8.1 Consensus size: 27
71581605 GTTTACCAAG
* * *
71581615 TTACTGAAATACCCTTATAGGGTAAAA
1 TTACTGAAATACCCCTGTAGGGTAGAA
* ** *
71581642 TTATTGAAATACCATTGTCGGGTAGAA
1 TTACTGAAATACCCCTGTAGGGTAGAA
*
71581669 TTACTAAAATACCCCTGTAGGGTAGAA
1 TTACTGAAATACCCCTGTAGGGTAGAA
*
71581696 TTACTGAAATACCCCTATAGGGTAGAA
1 TTACTGAAATACCCCTGTAGGGTAGAA
* *
71581723 TTACTAAAATACCCCTGTAAGGTAGAA
1 TTACTGAAATACCCCTGTAGGGTAGAA
** * *
71581750 TTACCAAAATACCCTTGTAGGGTAAAA
1 TTACTGAAATACCCCTGTAGGGTAGAA
* *
71581777 ATACCGAAATACCCCTGTAGGGTAGAA
1 TTACTGAAATACCCCTGTAGGGTAGAA
* * * * *
71581804 TTACCGAGATACCCTTGTGGGGTAAAA
1 TTACTGAAATACCCCTGTAGGGTAGAA
71581831 TTAC
1 TTAC
71581835 CATTTTGCCC
Statistics
Matches: 165, Mismatches: 28, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 165 1.00
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.27
Consensus pattern (27 bp):
TTACTGAAATACCCCTGTAGGGTAGAA
Found at i:71582440 original size:6 final size:6
Alignment explanation
Indices: 71582429--71582559 Score: 99
Period size: 6 Copynumber: 21.3 Consensus size: 6
71582419 TTGTATTTAC
* * * *
71582429 ATTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTA ATTCTG -TCACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
* *
71582479 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG -TCACTTG ATTCTA
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG
* *
71582528 ATTCTG ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
71582560 AATGTTTCTT
Statistics
Matches: 98, Mismatches: 16, Indels: 22
0.72 0.12 0.16
Matches are distributed among these distances:
5 5 0.05
6 81 0.83
7 9 0.09
8 3 0.03
ACGTcount: A:0.20, C:0.19, G:0.13, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:71582460 original size:25 final size:25
Alignment explanation
Indices: 71582429--71582514 Score: 113
Period size: 25 Copynumber: 3.5 Consensus size: 25
71582419 TTGTATTTAC
71582429 ATTCTGATTCTGATTCTGTTACCTG
1 ATTCTGATTCTGATTCTGTTACCTG
* * * *
71582454 ATACTGATTCTAATTCTGTCACCTA
1 ATTCTGATTCTGATTCTGTTACCTG
71582479 ATTCTGATTCTGATTCTGATT--CTG
1 ATTCTGATTCTGATTCTG-TTACCTG
71582503 ATTCTGATTCTG
1 ATTCTGATTCTG
71582515 TCACTTGATT
Statistics
Matches: 52, Mismatches: 8, Indels: 3
0.83 0.13 0.05
Matches are distributed among these distances:
24 14 0.27
25 37 0.71
26 1 0.02
ACGTcount: A:0.20, C:0.20, G:0.14, T:0.47
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTTACCTG
Found at i:71582464 original size:31 final size:29
Alignment explanation
Indices: 71582429--71582538 Score: 89
Period size: 31 Copynumber: 3.6 Consensus size: 29
71582419 TTGTATTTAC
*
71582429 ATTCTGATTCTGATTCTGTTACCTGATACTG
1 ATTCTAATTCTGATTCTGTT--CTGATACTG
* * *
71582460 ATTCTAATTCTG-TCACCTAATTCTGATTCTG
1 ATTCTAATTCTGAT--TCT-GTTCTGATACTG
*
71582491 ATTCTGATTCTGATTCTGATTCTG-TCACTTG
1 ATTCTAATTCTGATTCTG-TTCTGAT-AC-TG
71582522 ATTCTAATTCTGATTCT
1 ATTCTAATTCTGATTCT
71582539 CATTTTGATT
Statistics
Matches: 63, Mismatches: 9, Indels: 14
0.73 0.10 0.16
Matches are distributed among these distances:
29 1 0.02
30 9 0.14
31 48 0.76
32 3 0.05
33 2 0.03
ACGTcount: A:0.20, C:0.20, G:0.13, T:0.47
Consensus pattern (29 bp):
ATTCTAATTCTGATTCTGTTCTGATACTG
Found at i:71582506 original size:43 final size:43
Alignment explanation
Indices: 71582435--71582557 Score: 149
Period size: 43 Copynumber: 2.8 Consensus size: 43
71582425 TTACATTCTG
*
71582435 ATTCTGATTCTG-TTACCTGATACTGATTCTAATTCTGTCACCTA
1 ATTCTGATTCTGATT--CTGATTCTGATTCTAATTCTGTCACCTA
* * *
71582479 ATTCTGATTCTGATTCTGATTCTGATTCTGATTCTGTCACTTG
1 ATTCTGATTCTGATTCTGATTCTGATTCTAATTCTGTCACCTA
* * * *
71582522 ATTCTAATTCTGATTCTCATTTTGATTCTAGTTCTG
1 ATTCTGATTCTGATTCTGATTCTGATTCTAATTCTG
71582558 ATAATGTTTC
Statistics
Matches: 69, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
43 55 0.80
44 12 0.17
45 2 0.03
ACGTcount: A:0.20, C:0.20, G:0.13, T:0.48
Consensus pattern (43 bp):
ATTCTGATTCTGATTCTGATTCTGATTCTAATTCTGTCACCTA
Found at i:71585609 original size:27 final size:27
Alignment explanation
Indices: 71585579--71585640 Score: 92
Period size: 26 Copynumber: 2.3 Consensus size: 27
71585569 ATTTACTAAA
71585579 ATACCCCTAAGTATG-AAAATTACCATT
1 ATACCCCTAAG-ATGCAAAATTACCATT
*
71585606 ATACCCCT-AGGTGCAAAATTACCATT
1 ATACCCCTAAGATGCAAAATTACCATT
71585632 ATACCCCTA
1 ATACCCCTA
71585641 GGGTTAATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
25 2 0.06
26 22 0.69
27 8 0.25
ACGTcount: A:0.37, C:0.27, G:0.08, T:0.27
Consensus pattern (27 bp):
ATACCCCTAAGATGCAAAATTACCATT
Found at i:71585811 original size:27 final size:27
Alignment explanation
Indices: 71585744--71585858 Score: 135
Period size: 27 Copynumber: 4.3 Consensus size: 27
71585734 TAAAGGAACC
*
71585744 GTTCTAGTGGCTCTGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCACAAATATCT
* *
71585771 ATTTCTGGTAGCTCTGCCACAAATATCT
1 -GTTCTGGTGGCTCTGCCACAAATATCT
*
71585799 GTTCTGGTGGCTCTGCCA-TAATATCT
1 GTTCTGGTGGCTCTGCCACAAATATCT
* * *
71585825 GTATTTGGTGACTCTGTCAC-AATATCT
1 GT-TCTGGTGGCTCTGCCACAAATATCT
71585852 GTTCTGG
1 GTTCTGG
71585859 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
26 13 0.17
27 38 0.51
28 24 0.32
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.37
Consensus pattern (27 bp):
GTTCTGGTGGCTCTGCCACAAATATCT
Found at i:71604117 original size:27 final size:27
Alignment explanation
Indices: 71604077--71604235 Score: 186
Period size: 27 Copynumber: 5.9 Consensus size: 27
71604067 AGGAAGCGTC
*
71604077 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
71604104 CTGGTGGCTCTGCCAC-ATATATCTG-T
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
71604130 CCTGGTGGCTAC-GCCACAATTATCTGAT
1 -CTGGTGGCT-CTGCCACAATTATCTGAT
*
71604158 CTGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
71604185 CTGGTGGCTCTGCCACAA-TATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * *
71604212 CTGGTGACTTTGTCACAA-TATCTG
1 CTGGTGGCTCTGCCACAATTATCTG
71604236 GCAGCCTCGC
Statistics
Matches: 117, Mismatches: 6, Indels: 18
0.83 0.04 0.13
Matches are distributed among these distances:
26 12 0.10
27 100 0.85
28 5 0.04
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:71604156 original size:54 final size:54
Alignment explanation
Indices: 71604074--71604235 Score: 240
Period size: 54 Copynumber: 3.0 Consensus size: 54
71604064 TGGAGGAAGC
*
71604074 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTACGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
71604128 GTCCTGGTGGCTACGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTACGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* * * *
71604182 GTTCTGGTGGCT-CTGCCACAA-TATCTGTATCTGGTGACTTTGTCACA-ATATCT
1 GTCCTGGTGGCTAC-GCCACAATTATCTG-ATCTGGTGGCTCTGCCACATATATCT
71604235 G
1 G
71604236 GCAGCCTCGC
Statistics
Matches: 101, Mismatches: 5, Indels: 5
0.91 0.05 0.05
Matches are distributed among these distances:
53 14 0.14
54 87 0.86
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (54 bp):
GTCCTGGTGGCTACGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:71604229 original size:81 final size:80
Alignment explanation
Indices: 71604077--71604235 Score: 214
Period size: 81 Copynumber: 2.0 Consensus size: 80
71604067 AGGAAGCGTC
*
71604077 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGGCTAC
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTAC
71604142 GCCACAATTATCTGAT
66 GCCACAA-TATCTGAT
* * *
71604158 CTGGTGGCTCTGCCAC-ATATATCTGTTCTGGTGGCTCTGCCACA-ATATCTGTATCTGGTGACT
1 CTGGTGGCTATGCCACAAT-TATCTGATCTGGTGGCTCTGCCACATATATCTGT-CCTGGTGACT
** *
71604221 TTGTCACAATATCTG
64 ACGCCACAATATCTG
71604236 GCAGCCTCGC
Statistics
Matches: 69, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
80 16 0.23
81 53 0.77
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (80 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTAC
GCCACAATATCTGAT
Found at i:71605228 original size:14 final size:17
Alignment explanation
Indices: 71605193--71605233 Score: 52
Period size: 15 Copynumber: 2.6 Consensus size: 17
71605183 CTGTGGAATG
*
71605193 GATTTAAAAAAAATAAA
1 GATTTATAAAAAATAAA
71605210 GATTT-TAAAAAA-AAA
1 GATTTATAAAAAATAAA
71605225 -ATTTATAAA
1 GATTTATAAA
71605234 GATTGCGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
14 4 0.18
15 7 0.32
16 6 0.27
17 5 0.23
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (17 bp):
GATTTATAAAAAATAAA
Found at i:71605577 original size:12 final size:12
Alignment explanation
Indices: 71605560--71605590 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
71605550 ATGAGTACAA
71605560 GAGGCCGTGGTC
1 GAGGCCGTGGTC
71605572 GAGGCCGTGGTC
1 GAGGCCGTGGTC
71605584 GAGGCCG
1 GAGGCCG
71605591 AGGTAGTACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.10, C:0.26, G:0.52, T:0.13
Consensus pattern (12 bp):
GAGGCCGTGGTC
Found at i:71646892 original size:104 final size:103
Alignment explanation
Indices: 71646712--71646934 Score: 367
Period size: 104 Copynumber: 2.2 Consensus size: 103
71646702 TGTATATAAA
** * *
71646712 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
71646777 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATT-CCCCG
* *
71646816 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCG-TGATCCACCATATCT
71646880 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
71646919 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
71646935 GATATCCATT
Statistics
Matches: 112, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
103 21 0.19
104 90 0.80
105 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.32, T:0.31
Consensus pattern (103 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
Found at i:71646986 original size:70 final size:71
Alignment explanation
Indices: 71646854--71647003 Score: 248
Period size: 70 Copynumber: 2.1 Consensus size: 71
71646844 TCATTGGTGG
* *
71646854 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCG
71646919 AGGGGT
66 AGGGGT
***
71646925 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCG
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCG
71646989 AGGGGT
66 AGGGGT
71646995 TGCTAAGTG
1 TGCTAAGTG
71647004 ATGATTCCCC
Statistics
Matches: 74, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
70 44 0.59
71 30 0.41
ACGTcount: A:0.23, C:0.16, G:0.30, T:0.31
Consensus pattern (71 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCG
AGGGGT
Found at i:71646999 original size:26 final size:26
Alignment explanation
Indices: 71646964--71647015 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
71646954 AAATGAAAAG
* *
71646964 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGATGATTCCCCGA
71646990 GGGGTTGCTAAGTGATGATTCCCCGA
1 GGGGTTGCTAAGTGATGATTCCCCGA
71647016 TTCAGTGGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.15, C:0.21, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGATGATTCCCCGA
Found at i:71656669 original size:23 final size:25
Alignment explanation
Indices: 71656615--71656670 Score: 71
Period size: 26 Copynumber: 2.3 Consensus size: 25
71656605 TTGGATCTAA
71656615 AATATGTCACTTTAATATTTGAGTAT
1 AATATGTCACTTTAATATTTGAG-AT
* *
71656641 AATATGTCACTTTCAT-TTTTA-AT
1 AATATGTCACTTTAATATTTGAGAT
71656664 AATATGT
1 AATATGT
71656671 GATTAAAGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 9 0.32
25 4 0.14
26 15 0.54
ACGTcount: A:0.34, C:0.09, G:0.09, T:0.48
Consensus pattern (25 bp):
AATATGTCACTTTAATATTTGAGAT
Found at i:71659460 original size:22 final size:22
Alignment explanation
Indices: 71659435--71659476 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
71659425 TTTTTTTAAA
* *
71659435 AAAATTAATTTATTTATTTTTT
1 AAAATTAATTAATTAATTTTTT
*
71659457 AAAATTGATTAATTAATTTT
1 AAAATTAATTAATTAATTTT
71659477 ACCCCAAAAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (22 bp):
AAAATTAATTAATTAATTTTTT
Found at i:71668667 original size:37 final size:37
Alignment explanation
Indices: 71668617--71668728 Score: 181
Period size: 37 Copynumber: 3.0 Consensus size: 37
71668607 TTATTACGAA
71668617 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
71668654 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
* * *
71668691 GTCTTACCCGGACAAAAT-TCCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCT-CCACACGAAGTTATCGG
71668728 G
1 G
71668729 CCTTTAGAGC
Statistics
Matches: 71, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
36 1 0.01
37 70 0.99
ACGTcount: A:0.27, C:0.30, G:0.20, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
Found at i:71669095 original size:49 final size:49
Alignment explanation
Indices: 71668851--71669097 Score: 367
Period size: 49 Copynumber: 5.1 Consensus size: 49
71668841 CCCTTCGGGA
* * * * *
71668851 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
71668898 CCTGTCACATATATATACACTTCCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
71668947 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
71668994 CCTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
71669045 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
71669094 CTTA
1 CTTA
71669098 CTATCATTTC
Statistics
Matches: 181, Mismatches: 13, Indels: 10
0.89 0.06 0.05
Matches are distributed among these distances:
47 53 0.29
48 1 0.01
49 81 0.45
51 46 0.25
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:71674636 original size:27 final size:27
Alignment explanation
Indices: 71674605--71674782 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
71674595 TAAATTGTAC
71674605 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
71674632 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
71674658 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
71674686 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
71674714 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
71674741 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
71674768 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
71674783 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:71674719 original size:82 final size:81
Alignment explanation
Indices: 71674606--71674761 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
71674596 AAATTGTACA
* *
71674606 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
71674670 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
71674687 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
71674752 TGCGAGTTGA
65 TGCGAATTGA
71674762 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:71674773 original size:82 final size:81
Alignment explanation
Indices: 71674602--71674782 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
71674592 GATTAAATTG
* *
71674602 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
71674667 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
71674683 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
71674747 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
71674765 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
71674783 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:71681220 original size:9 final size:9
Alignment explanation
Indices: 71681206--71681250 Score: 51
Period size: 9 Copynumber: 5.2 Consensus size: 9
71681196 TAATGTTCAT
71681206 TTAACCAAA
1 TTAACCAAA
71681215 TTAACCAAA
1 TTAACCAAA
71681224 TT-A--AAA
1 TTAACCAAA
71681230 TTAACCAAAA
1 TTAACC-AAA
*
71681240 TTAACCGAA
1 TTAACCAAA
71681249 TT
1 TT
71681251 GGTAATATAT
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
6 5 0.16
7 1 0.03
8 1 0.03
9 15 0.48
10 9 0.29
ACGTcount: A:0.53, C:0.18, G:0.02, T:0.27
Consensus pattern (9 bp):
TTAACCAAA
Found at i:71681232 original size:15 final size:16
Alignment explanation
Indices: 71681212--71681243 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
71681202 TCATTTAACC
71681212 AAATTAACC-AAATTA
1 AAATTAACCAAAATTA
71681227 AAATTAACCAAAATTA
1 AAATTAACCAAAATTA
71681243 A
1 A
71681244 CCGAATTGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.62, C:0.12, G:0.00, T:0.25
Consensus pattern (16 bp):
AAATTAACCAAAATTA
Found at i:71685862 original size:17 final size:17
Alignment explanation
Indices: 71685840--71685873 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
71685830 TACAAAATCA
*
71685840 AATCTTATCAAATTACT
1 AATCTTATAAAATTACT
*
71685857 AATCTTCTAAAATTACT
1 AATCTTATAAAATTACT
71685874 TTCCTTATTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.41, C:0.18, G:0.00, T:0.41
Consensus pattern (17 bp):
AATCTTATAAAATTACT
Found at i:71706574 original size:20 final size:20
Alignment explanation
Indices: 71706549--71706586 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
71706539 TTTAATAACG
71706549 TTTAATAAATG-AATAAAACA
1 TTTAATAAA-GAAATAAAACA
71706569 TTTAATAAAGAAATAAAA
1 TTTAATAAAGAAATAAAA
71706587 AAATATTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 1 0.06
20 16 0.94
ACGTcount: A:0.63, C:0.03, G:0.05, T:0.29
Consensus pattern (20 bp):
TTTAATAAAGAAATAAAACA
Found at i:71706848 original size:17 final size:16
Alignment explanation
Indices: 71706808--71706847 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
71706798 AAGAAAGAAA
*
71706808 GAAAAAATTGTCACTT
1 GAAAAAAATGTCACTT
71706824 GAAAAAAATGTCACTT
1 GAAAAAAATGTCACTT
71706840 GAAAAAAA
1 GAAAAAAA
71706848 AACCTACTGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.55, C:0.10, G:0.12, T:0.23
Consensus pattern (16 bp):
GAAAAAAATGTCACTT
Found at i:71708275 original size:12 final size:11
Alignment explanation
Indices: 71708252--71708284 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
71708242 TAAATTATAG
71708252 ATAAAT-AAAT
1 ATAAATAAAAT
71708262 ATGAAATAAAAT
1 AT-AAATAAAAT
71708274 ATAAATAAAAT
1 ATAAATAAAAT
71708285 GATTTATAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 2 0.10
11 13 0.62
12 6 0.29
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (11 bp):
ATAAATAAAAT
Found at i:71712202 original size:22 final size:22
Alignment explanation
Indices: 71712177--71712234 Score: 55
Period size: 22 Copynumber: 2.6 Consensus size: 22
71712167 AGTGCACTAA
*
71712177 CAAAATAGTAGGCATCGAAGTG
1 CAAAATAGTAGGCATCGAAATG
* * *
71712199 C-AAATCACTAAGCGTCGAAATG
1 CAAAAT-AGTAGGCATCGAAATG
*
71712221 CAAAACAGTAGGCA
1 CAAAATAGTAGGCA
71712235 CTAAAGTGCA
Statistics
Matches: 26, Mismatches: 8, Indels: 4
0.68 0.21 0.11
Matches are distributed among these distances:
21 4 0.15
22 19 0.73
23 3 0.12
ACGTcount: A:0.43, C:0.19, G:0.22, T:0.16
Consensus pattern (22 bp):
CAAAATAGTAGGCATCGAAATG
Found at i:71712244 original size:22 final size:22
Alignment explanation
Indices: 71712219--71712301 Score: 78
Period size: 22 Copynumber: 3.8 Consensus size: 22
71712209 AGCGTCGAAA
* *
71712219 TGCAAAAC-AGTAGGCACTAAAG
1 TGCAAAACGA-TAAGCACCAAAG
*
71712241 TGCAGAACGATAAGCACCAAAG
1 TGCAAAACGATAAGCACCAAAG
* *
71712263 TGCAAAACGGTAAGCGCCAAAG
1 TGCAAAACGATAAGCACCAAAG
* * *
71712285 CGCAAGATGATAAGCAC
1 TGCAAAACGATAAGCAC
71712302 GCTAAAATTT
Statistics
Matches: 49, Mismatches: 11, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
22 48 0.98
23 1 0.02
ACGTcount: A:0.43, C:0.22, G:0.24, T:0.11
Consensus pattern (22 bp):
TGCAAAACGATAAGCACCAAAG
Found at i:71713144 original size:18 final size:18
Alignment explanation
Indices: 71713121--71713159 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
71713111 TTATTCAACA
71713121 TATAAAATTGTAATTAAG
1 TATAAAATTGTAATTAAG
*
71713139 TATAAATTTGTAATTAAG
1 TATAAAATTGTAATTAAG
71713157 TAT
1 TAT
71713160 CATATTAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.46, C:0.00, G:0.10, T:0.44
Consensus pattern (18 bp):
TATAAAATTGTAATTAAG
Found at i:71723174 original size:32 final size:32
Alignment explanation
Indices: 71723138--71723199 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
71723128 CCTTTTCATA
*
71723138 TTTCATATTTCATAACACTAGGCCGAAGCCCT
1 TTTCAAATTTCATAACACTAGGCCGAAGCCCT
** *
71723170 TTTCAAATTTCATATTACTGGGCCGAAGCC
1 TTTCAAATTTCATAACACTAGGCCGAAGCC
71723200 TTTACTGTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.32
Consensus pattern (32 bp):
TTTCAAATTTCATAACACTAGGCCGAAGCCCT
Found at i:71723447 original size:24 final size:24
Alignment explanation
Indices: 71723396--71723513 Score: 170
Period size: 23 Copynumber: 5.0 Consensus size: 24
71723386 ACTTTATCAT
*
71723396 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
71723421 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
71723445 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
71723468 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
71723491 ATAACAGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
71723514 TCACTTCCTC
Statistics
Matches: 87, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
23 45 0.52
24 30 0.34
25 12 0.14
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:71723588 original size:20 final size:20
Alignment explanation
Indices: 71723563--71723629 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
71723553 TTATGAATAC
71723563 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
71723583 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
71723603 GTCATGTGCATATTATACAT
1 ATCATGTGCATATCATACAT
*
71723623 ACCATGT
1 ATCATGT
71723630 TTATCAAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:71723594 original size:11 final size:11
Alignment explanation
Indices: 71723563--71723615 Score: 51
Period size: 11 Copynumber: 5.2 Consensus size: 11
71723553 TTATGAATAC
71723563 ATCATGTGCAT
1 ATCATGTGCAT
*
71723574 ATCA--TACAT
1 ATCATGTGCAT
71723583 ATCATGTGCAT
1 ATCATGTGCAT
*
71723594 ATCA--TACAT
1 ATCATGTGCAT
*
71723603 GTCATGTGCAT
1 ATCATGTGCAT
71723614 AT
1 AT
71723616 TATACATACC
Statistics
Matches: 32, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
9 15 0.47
11 17 0.53
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:71731542 original size:24 final size:24
Alignment explanation
Indices: 71731505--71731608 Score: 142
Period size: 23 Copynumber: 4.4 Consensus size: 24
71731495 CTGGAGGCCT
71731505 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCAAA
71731530 AGCCCTTTTAATAACTGGGGCATAA
1 AGCCCTTTTAATAACTGGGGCA-AA
*
71731555 A-CCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCAAA
* *
71731577 AGCCC-TTTAATAACTAGGGCATA
1 AGCCCTTTTAATAACTGGGGCAAA
71731600 AGCCCTTTT
1 AGCCCTTTT
71731609 TCACTTCCTC
Statistics
Matches: 74, Mismatches: 2, Indels: 7
0.89 0.02 0.08
Matches are distributed among these distances:
22 2 0.03
23 41 0.55
24 24 0.32
25 7 0.09
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCAAA
Found at i:71731683 original size:20 final size:20
Alignment explanation
Indices: 71731658--71731724 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
71731648 TTATGAATAC
71731658 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
71731678 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
71731698 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
71731718 ACCATGT
1 ATCATGT
71731725 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:71731689 original size:11 final size:11
Alignment explanation
Indices: 71731658--71731713 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
71731648 TTATGAATAC
71731658 ATCATGTGCAT
1 ATCATGTGCAT
*
71731669 ATCA--TACAT
1 ATCATGTGCAT
71731678 ATCATGTGCAT
1 ATCATGTGCAT
*
71731689 ATCA--TACAT
1 ATCATGTGCAT
*
71731698 GTCATGTGCAT
1 ATCATGTGCAT
71731709 ATCAT
1 ATCAT
71731714 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:71733562 original size:20 final size:20
Alignment explanation
Indices: 71733539--71733601 Score: 65
Period size: 20 Copynumber: 3.1 Consensus size: 20
71733529 GTATCGGTAG
71733539 TTTTGTTAAAATATCAATAC
1 TTTTGTTAAAATATCAATAC
* * **
71733559 TTTT-TCTAAAGTATCAGTTTT
1 TTTTGT-TAAAATATCA-ATAC
71733580 TTTTGTTAAAATATCAATAC
1 TTTTGTTAAAATATCAATAC
71733600 TT
1 TT
71733602 AAGTGCCCAA
Statistics
Matches: 32, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
19 1 0.03
20 16 0.50
21 14 0.44
22 1 0.03
ACGTcount: A:0.33, C:0.10, G:0.06, T:0.51
Consensus pattern (20 bp):
TTTTGTTAAAATATCAATAC
Found at i:71733589 original size:21 final size:21
Alignment explanation
Indices: 71733539--71733601 Score: 74
Period size: 21 Copynumber: 3.0 Consensus size: 21
71733529 GTATCGGTAG
71733539 TTTTGTTAAAATATCAATACT
1 TTTTGTTAAAATATCAATACT
* * * **
71733560 TTTT-CTAAAGTATCAGTTTT
1 TTTTGTTAAAATATCAATACT
71733580 TTTTGTTAAAATATCAATACT
1 TTTTGTTAAAATATCAATACT
71733601 T
1 T
71733602 AAGTGCCCAA
Statistics
Matches: 31, Mismatches: 10, Indels: 2
0.72 0.23 0.05
Matches are distributed among these distances:
20 15 0.48
21 16 0.52
ACGTcount: A:0.33, C:0.10, G:0.06, T:0.51
Consensus pattern (21 bp):
TTTTGTTAAAATATCAATACT
Found at i:71738541 original size:21 final size:21
Alignment explanation
Indices: 71738504--71738545 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
71738494 TGTTTTGGCA
*
71738504 TGTTTTGAGCTTGTTTAATTG
1 TGTTTTGAGCTAGTTTAATTG
71738525 TGTTTTGAG-TAGTTTTAATTG
1 TGTTTTGAGCTAG-TTTAATTG
71738546 CTAGTCAATG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 2 0.11
21 17 0.89
ACGTcount: A:0.17, C:0.02, G:0.24, T:0.57
Consensus pattern (21 bp):
TGTTTTGAGCTAGTTTAATTG
Found at i:71738912 original size:18 final size:20
Alignment explanation
Indices: 71738889--71738931 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
71738879 CCTGCTTTAA
71738889 AAAATTGTC-AAATT-TTCC
1 AAAATTGTCTAAATTCTTCC
* *
71738907 AAAATTTTCTAATTTCTTCC
1 AAAATTGTCTAAATTCTTCC
71738927 AAAAT
1 AAAAT
71738932 GATCCCTGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 8 0.38
19 4 0.19
20 9 0.43
ACGTcount: A:0.40, C:0.16, G:0.02, T:0.42
Consensus pattern (20 bp):
AAAATTGTCTAAATTCTTCC
Found at i:71742861 original size:28 final size:28
Alignment explanation
Indices: 71742830--71742898 Score: 102
Period size: 28 Copynumber: 2.5 Consensus size: 28
71742820 ATGGTACTCG
* *
71742830 GTGTACGAAATATTGAGAATGGCACTTA
1 GTGTGCGAAATATTGAGAATGACACTTA
*
71742858 GTGTGCGAGATATTGAGAATGACACTTA
1 GTGTGCGAAATATTGAGAATGACACTTA
*
71742886 GTGTGCAAAATAT
1 GTGTGCGAAATAT
71742899 CGAATGATTC
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.35, C:0.10, G:0.26, T:0.29
Consensus pattern (28 bp):
GTGTGCGAAATATTGAGAATGACACTTA
Found at i:71752111 original size:9 final size:9
Alignment explanation
Indices: 71752097--71752124 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
71752087 TAATTAAAAC
71752097 ATAAAATAA
1 ATAAAATAA
71752106 ATAAAATAA
1 ATAAAATAA
71752115 ATAAAATAA
1 ATAAAATAA
71752124 A
1 A
71752125 CAAATAAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (9 bp):
ATAAAATAA
Found at i:71759876 original size:42 final size:44
Alignment explanation
Indices: 71759772--71759865 Score: 122
Period size: 44 Copynumber: 2.2 Consensus size: 44
71759762 TGTGTTATCA
* * *
71759772 TGTAAGACCACGCCTGGGACGTTGGCATCAACTTGTGATTTATG
1 TGTAAGACCATGTCTGGGACGTTGGCATCAACTTGTGATTTACG
*
71759816 TGTAAGACCATGTCTGGGACTTTGGCATCATA-TTG-GATTT-CG
1 TGTAAGACCATGTCTGGGACGTTGGCATCA-ACTTGTGATTTACG
71759858 TGTAAGAC
1 TGTAAGAC
71759866 TCTATTTGGG
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
42 9 0.20
43 5 0.11
44 30 0.67
45 1 0.02
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.32
Consensus pattern (44 bp):
TGTAAGACCATGTCTGGGACGTTGGCATCAACTTGTGATTTACG
Found at i:71759930 original size:43 final size:42
Alignment explanation
Indices: 71759757--71759928 Score: 111
Period size: 43 Copynumber: 4.0 Consensus size: 42
71759747 CATAGGACTC
* * *
71759757 TGATATGTG-TTATCATGTAAGACCACGCCTGGGACGTTGGCA
1 TGATATTTGATTA-CATGTAAGACCTCGTCTGGGACGTTGGCA
* ** *
71759799 TCA-ACTTGTGATTTATGTGTAAGACCAT-GTCTGGGACTTTGGCA
1 TGATA-TT-TGA-TTACATGTAAGACC-TCGTCTGGGACGTTGGCA
* * * * * * *
71759843 TCATATTGGATTTCGTGTAAGA-CTCTATTTGGGATAG-TGGCA
1 TGATATTTGATTACATGTAAGACCTC-GTCTGGGA-CGTTGGCA
71759885 TTGATATTTGATTACATGTAAGACCTCGTCTGGGACGTTGGCA
1 -TGATATTTGATTACATGTAAGACCTCGTCTGGGACGTTGGCA
71759928 T
1 T
71759929 TGTACGAGCT
Statistics
Matches: 97, Mismatches: 21, Indels: 24
0.68 0.15 0.17
Matches are distributed among these distances:
40 1 0.01
41 2 0.02
42 26 0.27
43 33 0.34
44 31 0.32
45 4 0.04
ACGTcount: A:0.23, C:0.16, G:0.26, T:0.35
Consensus pattern (42 bp):
TGATATTTGATTACATGTAAGACCTCGTCTGGGACGTTGGCA
Found at i:71766017 original size:44 final size:43
Alignment explanation
Indices: 71765949--71766049 Score: 134
Period size: 44 Copynumber: 2.3 Consensus size: 43
71765939 CTGATATGTG
*
71765949 TTATCGTGTAAGACCACGTCTGGGACGTTGGCATCG-ACTTATGAT
1 TTAT-GTGTAAGACCACGTCTGGGACATTGGCATCGTA-TT-TGAT
*
71765994 TTATGTGTAAGACCATGTCTGGGACATTGGCATCGTATTTGAT
1 TTATGTGTAAGACCACGTCTGGGACATTGGCATCGTATTTGAT
*
71766037 TT-CGTGTAAGACC
1 TTATGTGTAAGACC
71766050 CAGTGGTATC
Statistics
Matches: 52, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
42 10 0.19
43 6 0.12
44 31 0.60
45 5 0.10
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.34
Consensus pattern (43 bp):
TTATGTGTAAGACCACGTCTGGGACATTGGCATCGTATTTGAT
Found at i:71768373 original size:93 final size:92
Alignment explanation
Indices: 71768215--71768384 Score: 286
Period size: 93 Copynumber: 1.8 Consensus size: 92
71768205 GGATGGTTGA
* *
71768215 GCATCCGAACTCGTTGAGTTGAGTCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGTT
1 GCATCCGAACTCGTTGAGTTGAGTCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGTT
71768280 GAGTCCGAGTTCGTGAGATGTAACTAG
66 GAGTCCGAGTTCGTGAGATGTAACTAG
* * *
71768307 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
71768372 TGAGTCCGAGTTC
65 TGAGTCCGAGTTC
71768385 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
92 24 0.33
93 48 0.67
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGTT
GAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:71768383 original size:46 final size:46
Alignment explanation
Indices: 71768219--71768389 Score: 197
Period size: 46 Copynumber: 3.7 Consensus size: 46
71768209 GGTTGAGCAT
* *
71768219 CCGAACTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCAAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
* * * *
71768264 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ACGC
* *
71768309 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
*
71768357 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
71768390 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 12, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
43 6 0.06
45 24 0.23
46 38 0.36
47 28 0.26
48 5 0.05
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
Found at i:71775839 original size:46 final size:46
Alignment explanation
Indices: 71775789--71775961 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
71775779 TGGTTGAGCA
*
71775789 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
71775835 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
71775882 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
71775928 CCCGAGCTCGTTGAGTTGATTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
71775962 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 60 0.57
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:71775945 original size:93 final size:93
Alignment explanation
Indices: 71775786--71775956 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
71775776 GGATGGTTGA
* *
71775786 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
71775851 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
71775879 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
*
71775944 TGATTCCGAGTTC
66 TGAGTCCGAGTTC
71775957 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Done.