Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 210 of 295
Found at i:72086518 original size:22 final size:22
Alignment explanation
Indices: 72086490--72086538 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
72086480 TTATTCTGAT
* *
72086490 TATGGCTTTGCGCCAACCTAAA
1 TATGGCTCTACGCCAACCTAAA
* *
72086512 TATGGCTCTATGCCAACCTAAT
1 TATGGCTCTACGCCAACCTAAA
72086534 TATGG
1 TATGG
72086539 TTGTGTGCCA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (22 bp):
TATGGCTCTACGCCAACCTAAA
Found at i:72086547 original size:22 final size:21
Alignment explanation
Indices: 72086488--72086549 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 21
72086478 AATTATTCTG
*
72086488 ATTATGGCTTTGCGCCAACCTA
1 ATTATGG-TTTGTGCCAACCTA
* * *
72086510 AATATGGCTCTATGCCAACCTA
1 ATTATGG-TTTGTGCCAACCTA
72086532 ATTATGGTTGTGTGCCAA
1 ATTATGGTT-TGTGCCAA
72086550 ACGTATTTGC
Statistics
Matches: 32, Mismatches: 7, Indels: 2
0.78 0.17 0.05
Matches are distributed among these distances:
21 1 0.03
22 31 0.97
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (21 bp):
ATTATGGTTTGTGCCAACCTA
Found at i:72086745 original size:27 final size:26
Alignment explanation
Indices: 72086707--72086841 Score: 135
Period size: 27 Copynumber: 5.0 Consensus size: 26
72086697 ATTCTGTTAA
* * *
72086707 GTGGCTTTGCCACATTATCTATTTCTG
1 GTGGCTATGCCACAATATCT-GTTCTG
72086734 GTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTATGCCAC-AATATCTGTTCTG
* * *
72086761 GTGGCTATGCCACAAATACCTGTTTTA
1 GTGGCTATGCCAC-AATATCTGTTCTG
*
72086788 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTATGCCACAATATCTGT-TCTG
* * * *
72086815 GTGACTCTGTCACAATATTTGTTCTG
1 GTGGCTATGCCACAATATCTGTTCTG
72086841 G
1 G
72086842 CAGCCATGCT
Statistics
Matches: 93, Mismatches: 13, Indels: 5
0.84 0.12 0.05
Matches are distributed among these distances:
26 13 0.14
27 74 0.80
28 6 0.06
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.37
Consensus pattern (26 bp):
GTGGCTATGCCACAATATCTGTTCTG
Found at i:72086968 original size:6 final size:6
Alignment explanation
Indices: 72086959--72087062 Score: 70
Period size: 6 Copynumber: 16.8 Consensus size: 6
72086949 TTGCATTCAC
* * *
72086959 ATTCTG ATTCTG ATTCTG -TTACTTG ATACTG ATTCTG ATTCTG -TCACCTA
1 ATTCTG ATTCTG ATTCTG ATT-C-TG ATTCTG ATTCTG ATTCTG AT--TCTG
* * * *
72087009 ATTCTG ATTCTG ATTCTG -TCACCTG ATTCTG ATTCTG ATACTC ATTTTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
72087058 ATTCT
1 ATTCT
72087063 AGTTCTAATA
Statistics
Matches: 75, Mismatches: 14, Indels: 18
0.70 0.13 0.17
Matches are distributed among these distances:
5 4 0.05
6 60 0.80
7 8 0.11
8 3 0.04
ACGTcount: A:0.19, C:0.20, G:0.13, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:72086990 original size:25 final size:25
Alignment explanation
Indices: 72086959--72087047 Score: 142
Period size: 25 Copynumber: 3.6 Consensus size: 25
72086949 TTGCATTCAC
* *
72086959 ATTCTGATTCTGATTCTGTTACTTG
1 ATTCTGATTCTGATTCTGTCACCTG
* *
72086984 ATACTGATTCTGATTCTGTCACCTA
1 ATTCTGATTCTGATTCTGTCACCTG
72087009 ATTCTGATTCTGATTCTGTCACCTG
1 ATTCTGATTCTGATTCTGTCACCTG
72087034 ATTCTGATTCTGAT
1 ATTCTGATTCTGAT
72087048 ACTCATTTTG
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 58 1.00
ACGTcount: A:0.19, C:0.20, G:0.15, T:0.46
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTCACCTG
Found at i:72089165 original size:27 final size:27
Alignment explanation
Indices: 72089138--72089569 Score: 533
Period size: 27 Copynumber: 16.0 Consensus size: 27
72089128 CAAAATGATT
**
72089138 GAAATACCCCTGTAGGGTAGAATTATT
1 GAAATACCCCTGTAGGGTAGAATTACC
72089165 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
72089192 AAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
72089219 GAAATGCCCCTGTACGATAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
72089246 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
72089273 GAAATACCCCTTTAGGGAAGAATTATC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
72089300 GAGATACCCCTGTAGGTTAGAATTATC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
72089327 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
72089354 GAAATATCCCTATAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
72089381 GAAATACCCCTGTAGGGTAGAATTA-C
1 GAAATACCCCTGTAGGGTAGAATTACC
* * * *
72089407 GAAAATGCCCCTATAAGGTAAAATTACC
1 G-AAATACCCCTGTAGGGTAGAATTACC
* * * * * **
72089435 GAAATGCCTCTATAGGGTATAACTATT
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
72089462 GAAATACCTCTATAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
72089489 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
72089516 AAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * * *
72089543 GAGATACCCTTGTGGGGTAAAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
72089570 ATTTTGCCCC
Statistics
Matches: 354, Mismatches: 49, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
26 1 0.00
27 351 0.99
28 2 0.01
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.25
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACC
Found at i:72090210 original size:27 final size:26
Alignment explanation
Indices: 72090180--72090315 Score: 139
Period size: 27 Copynumber: 5.1 Consensus size: 26
72090170 ATTTTGTTAA
* *
72090180 GTGGCTTTACCACATTATCTGTTTCTG
1 GTGGCTTTGCCACAATATCTG-TTCTG
*
72090207 GTGGCTATT-CCACAAATATCTGTTCTA
1 GTGGCT-TTGCCAC-AATATCTGTTCTG
* *
72090234 GTGGCTATGCCACAAATACCTGTTCTG
1 GTGGCTTTGCCAC-AATATCTGTTCTG
* *
72090261 GTGGCTCTGCCACAATATCTATATCTG
1 GTGGCTTTGCCACAATATCTGT-TCTG
* *
72090288 GTGACTTTGTCACAATATCTGTTCTG
1 GTGGCTTTGCCACAATATCTGTTCTG
72090314 GT
1 GT
72090316 AGCCATGCTG
Statistics
Matches: 93, Mismatches: 12, Indels: 9
0.82 0.11 0.08
Matches are distributed among these distances:
26 14 0.15
27 70 0.75
28 9 0.10
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.38
Consensus pattern (26 bp):
GTGGCTTTGCCACAATATCTGTTCTG
Found at i:72090439 original size:6 final size:6
Alignment explanation
Indices: 72090430--72090548 Score: 77
Period size: 6 Copynumber: 19.3 Consensus size: 6
72090420 GATTATTCAT
* * *
72090430 ATTCTG ATTCTA ATTCT- ATTACTTG ATAT-TG ATTCTG ATTCTG -TCACCTA
1 ATTCTG ATTCTG ATTCTG ATT-C-TG AT-TCTG ATTCTG ATTCTG AT--TCTG
* *
72090480 ATTCTG ATTCTG ATTCTG ATTCT- ATCACCTG ATTCTG ATTCTG ATTCTC
1 ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG
*
72090529 ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG A-TTCTG AT
72090549 AATGTTTCTT
Statistics
Matches: 89, Mismatches: 11, Indels: 26
0.71 0.09 0.21
Matches are distributed among these distances:
5 8 0.09
6 69 0.78
7 6 0.07
8 5 0.06
9 1 0.01
ACGTcount: A:0.21, C:0.18, G:0.12, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:72090494 original size:31 final size:31
Alignment explanation
Indices: 72090459--72090527 Score: 120
Period size: 31 Copynumber: 2.2 Consensus size: 31
72090449 TACTTGATAT
*
72090459 TGATTCTGATTCTGTCACCTAATTCTGATTC
1 TGATTCTGATTCTATCACCTAATTCTGATTC
*
72090490 TGATTCTGATTCTATCACCTGATTCTGATTC
1 TGATTCTGATTCTATCACCTAATTCTGATTC
72090521 TGATTCT
1 TGATTCT
72090528 CATTTTGATT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.19, C:0.22, G:0.13, T:0.46
Consensus pattern (31 bp):
TGATTCTGATTCTATCACCTAATTCTGATTC
Found at i:72090511 original size:25 final size:25
Alignment explanation
Indices: 72090430--72090527 Score: 90
Period size: 25 Copynumber: 3.7 Consensus size: 25
72090420 GATTATTCAT
* * *
72090430 ATTCTGATTCTAATTCTATTACTTG
1 ATTCTGATTCTGATTCTATCACCTG
*
72090455 ATAT-TGATTCTGATTCTGTCACCTAATTCTG
1 AT-TCTGATTCTGATTCTATCA-C-----CTG
72090486 ATTCTGATTCTGATTCTATCACCTG
1 ATTCTGATTCTGATTCTATCACCTG
72090511 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
72090528 CATTTTGATT
Statistics
Matches: 60, Mismatches: 5, Indels: 16
0.74 0.06 0.20
Matches are distributed among these distances:
25 36 0.60
26 2 0.03
30 2 0.03
31 20 0.33
ACGTcount: A:0.21, C:0.19, G:0.11, T:0.48
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTATCACCTG
Found at i:72092409 original size:27 final size:27
Alignment explanation
Indices: 72092381--72092596 Score: 297
Period size: 27 Copynumber: 8.0 Consensus size: 27
72092371 ACAAAATGAT
*
72092381 TGAAATACCCCTGTAGGGTAGAATTAT
1 TGAAATACCCCTGTAGGGTAGAATTAC
*
72092408 TGAAATACCCCTATAGGGTAGAATTAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
* *
72092435 TGAAATACCCCTGTAGGGTATAATTAT
1 TGAAATACCCCTGTAGGGTAGAATTAC
72092462 TGAAATACCCCTGTAGGGTAGAATTAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
*
72092489 TGAAATACCCCCGTAGGGTAGAATTAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
** *
72092516 CAAAATACCCCTGTAGGGTAGATTTAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
* *
72092543 CGAGATACCCCTGTAGGGTAGAATTAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
* * * * *
72092570 CGAGATACCCTTGTGGGGTAAAATTAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
72092597 CATTTTGCCC
Statistics
Matches: 171, Mismatches: 18, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 171 1.00
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.26
Consensus pattern (27 bp):
TGAAATACCCCTGTAGGGTAGAATTAC
Found at i:72093235 original size:27 final size:26
Alignment explanation
Indices: 72093205--72093339 Score: 144
Period size: 27 Copynumber: 5.0 Consensus size: 26
72093195 ATTCTGTTAA
* *
72093205 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTATGCCACAATATCTG-TTCTG
72093232 GTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTATGCCAC-AATATCTGTTCTG
* * *
72093259 GTGGCTATGCCACAAACACCTATTCTG
1 GTGGCTATGCCAC-AATATCTGTTCTG
* *
72093286 GTGGCTCTGCCACAATATCTGTATCTT
1 GTGGCTATGCCACAATATCTGT-TCTG
* * *
72093313 GTGACTCTGTCACAATATCTGTTCTG
1 GTGGCTATGCCACAATATCTGTTCTG
72093339 G
1 G
72093340 CAGCCATGCT
Statistics
Matches: 93, Mismatches: 13, Indels: 5
0.84 0.12 0.05
Matches are distributed among these distances:
26 10 0.11
27 76 0.82
28 7 0.08
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.36
Consensus pattern (26 bp):
GTGGCTATGCCACAATATCTGTTCTG
Found at i:72093495 original size:6 final size:6
Alignment explanation
Indices: 72093457--72093581 Score: 62
Period size: 6 Copynumber: 20.3 Consensus size: 6
72093447 TTGCATTCAC
* * *
72093457 ATTCTG ATTTTG ATTCTG -TTACTTG ATAT-TG ATTCTG ATTCTG -TCACCTA
1 ATTCTG ATTCTG ATTCTG ATT-C-TG AT-TCTG ATTCTG ATTCTG AT--TCTG
* * * *
72093507 ATTCTA ATTCTA ATTCTG ATTCTG ATTCTG -TCACCTG ATTCTG ATTTTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
* *
72093556 ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG A-TTCTG AT
72093582 AATATTTCTT
Statistics
Matches: 92, Mismatches: 14, Indels: 26
0.70 0.11 0.20
Matches are distributed among these distances:
5 6 0.07
6 74 0.80
7 8 0.09
8 3 0.03
9 1 0.01
ACGTcount: A:0.20, C:0.17, G:0.13, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:72093510 original size:19 final size:19
Alignment explanation
Indices: 72093486--72093552 Score: 75
Period size: 19 Copynumber: 3.6 Consensus size: 19
72093476 TACTTGATAT
72093486 TGATTCTGATTCTGTCACC
1 TGATTCTGATTCTGTCACC
* * * *
72093505 TAATTCTAATTC--TAATTC
1 TGATTCTGATTCTGTCA-CC
72093523 TGATTCTGATTCTGTCACC
1 TGATTCTGATTCTGTCACC
72093542 TGATTCTGATT
1 TGATTCTGATT
72093553 TTGATTCTCA
Statistics
Matches: 37, Mismatches: 8, Indels: 6
0.73 0.16 0.12
Matches are distributed among these distances:
17 2 0.05
18 11 0.30
19 22 0.59
20 2 0.05
ACGTcount: A:0.21, C:0.21, G:0.12, T:0.46
Consensus pattern (19 bp):
TGATTCTGATTCTGTCACC
Found at i:72093527 original size:37 final size:37
Alignment explanation
Indices: 72093486--72093572 Score: 120
Period size: 37 Copynumber: 2.4 Consensus size: 37
72093476 TACTTGATAT
72093486 TGATTCTGATTCTGTCACCTAATTCTAATTCTAATTC
1 TGATTCTGATTCTGTCACCTAATTCTAATTCTAATTC
* * * *
72093523 TGATTCTGATTCTGTCACCTGATTCTGATTTTGATTC
1 TGATTCTGATTCTGTCACCTAATTCTAATTCTAATTC
* *
72093560 TCATTTTGATTCT
1 TGATTCTGATTCT
72093573 AGTTCTGATA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 44 1.00
ACGTcount: A:0.20, C:0.20, G:0.11, T:0.49
Consensus pattern (37 bp):
TGATTCTGATTCTGTCACCTAATTCTAATTCTAATTC
Found at i:72098345 original size:46 final size:46
Alignment explanation
Indices: 72098278--72098452 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
72098268 TGTAACCCGC
* *
72098278 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCTCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCATTCACAT
*
72098324 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGTGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GG-G-C-A-TTCACAT
* ** *
72098374 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGATATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCATTCACAT
*
72098417 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
72098453 ATGGCCAAAT
Statistics
Matches: 110, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 62 0.56
47 28 0.25
48 3 0.03
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCATTCACAT
Found at i:72098472 original size:46 final size:44
Alignment explanation
Indices: 72098286--72098472 Score: 121
Period size: 46 Copynumber: 4.0 Consensus size: 44
72098276 GCCCATAAGC
* * * *
72098286 GAACTCGGACTCAACTCAACGAGCTCGGGCAT-TC-TCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTC-GG-ATGCCAACATCC--CAGT
* * *
72098332 GAACTCGGACTCAACTCAACGAGTTCGGGTGCCTAGTTACATCTCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACATCCCAGT
** * *
72098379 GAACTCGGACTCAACTCAACGAGTTCGGATATTC-GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGAT-GCCAACATCC--CAGT
*
72098425 GAACTCGGACTCAACTCAACGAGTTCGGATGGCCAAATATCCCAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGAT-GCC-AACATCCCAGT
72098471 GA
1 GA
72098473 CATGTCACTT
Statistics
Matches: 109, Mismatches: 20, Indels: 24
0.71 0.13 0.16
Matches are distributed among these distances:
43 4 0.04
44 1 0.01
45 4 0.04
46 61 0.56
47 29 0.27
48 6 0.06
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (44 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCAACATCCCAGT
Found at i:72100545 original size:31 final size:31
Alignment explanation
Indices: 72100507--72100570 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
72100497 AAACTCTTTC
72100507 TAATAAATATACACTTCTCGTTCAGACTATT
1 TAATAAATATACACTTCTCGTTCAGACTATT
*
72100538 TAATAAATATACACTTCTCGTTTAGACTATT
1 TAATAAATATACACTTCTCGTTCAGACTATT
72100569 TA
1 TA
72100571 CTCTTTTATC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.36, C:0.17, G:0.06, T:0.41
Consensus pattern (31 bp):
TAATAAATATACACTTCTCGTTCAGACTATT
Found at i:72100907 original size:15 final size:15
Alignment explanation
Indices: 72100878--72100927 Score: 59
Period size: 15 Copynumber: 3.4 Consensus size: 15
72100868 CAAAGATAAC
*
72100878 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
72100892 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
*
72100907 AA-AAGATCCAGGATA
1 AAGAA-ATCCAGAATA
72100922 AAGAAA
1 AAGAAA
72100928 CCTAAGATAC
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
14 10 0.32
15 19 0.61
16 2 0.06
ACGTcount: A:0.62, C:0.12, G:0.16, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:72104432 original size:16 final size:17
Alignment explanation
Indices: 72104411--72104443 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
72104401 TCAAATTGAC
72104411 GCAAAATCAT-ATTTTG
1 GCAAAATCATAATTTTG
*
72104427 GCAAAATTATAATTTTG
1 GCAAAATCATAATTTTG
72104444 CCCCTAAACT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.39, C:0.09, G:0.12, T:0.39
Consensus pattern (17 bp):
GCAAAATCATAATTTTG
Found at i:72107762 original size:27 final size:27
Alignment explanation
Indices: 72107723--72107776 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
72107713 ATCATAGCAC
*
72107723 AAATCAGTCTTTTACCCTCGAGGGGTA
1 AAATCAGTCTTTTACCCTAGAGGGGTA
*
72107750 AAAT-AGTCATTTTACCCTATAGGGGTA
1 AAATCAGTC-TTTTACCCTAGAGGGGTA
72107777 TTTTGGAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 4 0.17
27 20 0.83
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31
Consensus pattern (27 bp):
AAATCAGTCTTTTACCCTAGAGGGGTA
Found at i:72112632 original size:48 final size:46
Alignment explanation
Indices: 72112350--72112708 Score: 244
Period size: 47 Copynumber: 7.6 Consensus size: 46
72112340 TTTGTGCACT
* * * ** *
72112350 AGTGTAAGACATGTTTGGGACATGCTTCAGCCACA-TTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAG-CATAGAGATGAGTGCC
* * * *
72112396 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACAAAGATGAGTGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCATAGAGATGAGTGCC
* * * * * *
72112444 AGAGTAAGACATGTTTGGGACATGCATCGGCCTCGACA-GAGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCATAGAGATGAG-T-GCC
* * * * **
72112491 AGTGTAAGACGTGTCTGGGACACGCATCGGC-TA-AGA-GTTGTGTT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCATAGAGATG-AGTGCC
* * * * *
72112535 AGTGAAAGACATGTTTGGGACATGCATCAACAT-GCATCTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCATAG-A--GATGAGTGCC
*
72112583 AGTGTAAGACCATGTCTGAGACATGGCATCAGCATAGAGATGAGTGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCATAGAGATGAGTGCC
* * * * *
72112631 AGAGTAAGACATGTCTGGAACATGCATCAGCATGCATATATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCAT--AGAGATGAGTGCC
72112679 AGTGTAAGACCATGTCTGGGACATGGCATC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATC
72112709 GGTAATATAT
Statistics
Matches: 245, Mismatches: 49, Indels: 34
0.75 0.15 0.10
Matches are distributed among these distances:
44 26 0.11
45 8 0.03
46 33 0.13
47 71 0.29
48 65 0.27
49 26 0.11
50 15 0.06
51 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.29, T:0.22
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCATAGAGATGAGTGCC
Found at i:72112654 original size:96 final size:94
Alignment explanation
Indices: 72112353--72112710 Score: 410
Period size: 96 Copynumber: 3.8 Consensus size: 94
72112343 GTGCACTAGT
*
72112353 GTAAGACATGTTTGGGACATGCTTCAGCCA-CAT-TATGAGAGCCAGTGTAAGACCATGTCTGGG
1 GTAAGACATGTTTGGGACATGCATCAG-CATCATCTATGAGAGCCAGTGTAAGACCATGTCTGGG
* *
72112416 ACATGGCATCGGCACAAAGATGAGTGGCAGA
65 ACATGGCATCGGCA-TAAGATGAGTGCCAGA
* * *
72112447 GTAAGACATGTTTGGGACATGCATCGGCCTCGA-C-A-GAGATAGCCAGTGTAAGA-CGTGTCTG
1 GTAAGACATGTTTGGGACATGCATCAGCATC-ATCTATGAG--AGCCAGTGTAAGACCATGTCTG
* * ** *
72112508 GGACA-CGCATCGGC-TAAGA-GTTGTGTTAGT
63 GGACATGGCATCGGCATAAGATG-AGTGCCAGA
* * *
72112538 GAAAGACATGTTTGGGACATGCATCAACATGCATCTATGAGAGCCAGTGTAAGACCATGTCTGAG
1 GTAAGACATGTTTGGGACATGCATCAGCAT-CATCTATGAGAGCCAGTGTAAGACCATGTCTGGG
*
72112603 ACATGGCATCAGCATAGAGATGAGTGCCAGA
65 ACATGGCATCGGCATA-AGATGAGTGCCAGA
* * *
72112634 GTAAGACATGTCTGGAACATGCATCAGCATGCATATATGAGAGCCAGTGTAAGACCATGTCTGGG
1 GTAAGACATGTTTGGGACATGCATCAGCAT-CATCTATGAGAGCCAGTGTAAGACCATGTCTGGG
72112699 ACATGGCATCGG
65 ACATGGCATCGG
72112711 TAATATATCC
Statistics
Matches: 220, Mismatches: 29, Indels: 28
0.79 0.10 0.10
Matches are distributed among these distances:
90 1 0.00
91 36 0.16
92 15 0.07
93 24 0.11
94 49 0.22
95 16 0.07
96 78 0.35
97 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.29, T:0.22
Consensus pattern (94 bp):
GTAAGACATGTTTGGGACATGCATCAGCATCATCTATGAGAGCCAGTGTAAGACCATGTCTGGGA
CATGGCATCGGCATAAGATGAGTGCCAGA
Found at i:72113815 original size:8 final size:8
Alignment explanation
Indices: 72113802--72113827 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
72113792 TCCTAGCGTC
72113802 GGAAATGT
1 GGAAATGT
72113810 GGAAATGT
1 GGAAATGT
72113818 GGAAATGT
1 GGAAATGT
72113826 GG
1 GG
72113828 CGGAGTCTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.35, C:0.00, G:0.42, T:0.23
Consensus pattern (8 bp):
GGAAATGT
Found at i:72115269 original size:5 final size:5
Alignment explanation
Indices: 72115259--72115291 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
72115249 CACACTATGA
*
72115259 AAAAT AAAAT AAAAT AAAGT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
72115292 TAACGCACAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:72119984 original size:16 final size:18
Alignment explanation
Indices: 72119963--72120000 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
72119953 TTCTATATGG
*
72119963 ATTTTA-CATT-TATTTT
1 ATTTTACCATTGTATTTC
72119979 ATTTTACCATTGTATTTC
1 ATTTTACCATTGTATTTC
72119997 ATTT
1 ATTT
72120001 CAATAAGGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 6 0.32
17 4 0.21
18 9 0.47
ACGTcount: A:0.24, C:0.11, G:0.03, T:0.63
Consensus pattern (18 bp):
ATTTTACCATTGTATTTC
Found at i:72125148 original size:45 final size:45
Alignment explanation
Indices: 72125089--72125179 Score: 148
Period size: 45 Copynumber: 2.0 Consensus size: 45
72125079 ATATCGTACA
* *
72125089 ATGCCAACGTCCCAGACGTGGTCTTACATGTA-ATCACATATATCG
1 ATGCCAACATCCCAGACGTGGTCTTACATG-AGAACACATATATCG
72125134 ATGCCAACATCCCAGACGTGGTCTTACATGAGAACACATATATCG
1 ATGCCAACATCCCAGACGTGGTCTTACATGAGAACACATATATCG
72125179 A
1 A
72125180 AAATCTTATG
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
44 1 0.02
45 42 0.98
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (45 bp):
ATGCCAACATCCCAGACGTGGTCTTACATGAGAACACATATATCG
Found at i:72134162 original size:55 final size:53
Alignment explanation
Indices: 72134087--72134281 Score: 150
Period size: 53 Copynumber: 3.7 Consensus size: 53
72134077 CTAAAGTTTC
* * *
72134087 TAAGGCAAGGATACTATGTAAAACCATGTCAAGACATGCCATTGATAAGTTACTA
1 TAAGGCAAAGATACCATGTAAGACCATGTCAAGACATGCCATTGATAAGTT-C-A
* * * * * **
72134142 TAAGGCAAAGTTCCCATGTAAGACCAT-TCCAAGGCATGGCATTGGTGGGTTCA
1 TAAGGCAAAGATACCATGTAAGACCATGT-CAAGACATGCCATTGATAAGTTCA
* * * * *
72134195 TAAGGCAAGGATACCATGTAAGACCATGTCGAGACATGGCAATGGTAAGTTTCA
1 TAAGGCAAAGATACCATGTAAGACCATGTCAAGACATGCCATTGATAAG-TTCA
* * *
72134249 -AAGG----GATACCACGTAAGACCATGACAAGTCATG
1 TAAGGCAAAGATACCATGTAAGACCATGTCAAGACATG
72134282 GAAATGGTAA
Statistics
Matches: 115, Mismatches: 22, Indels: 12
0.77 0.15 0.08
Matches are distributed among these distances:
49 25 0.22
53 44 0.38
54 7 0.06
55 39 0.34
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.23
Consensus pattern (53 bp):
TAAGGCAAAGATACCATGTAAGACCATGTCAAGACATGCCATTGATAAGTTCA
Found at i:72134214 original size:53 final size:55
Alignment explanation
Indices: 72134087--72134232 Score: 163
Period size: 55 Copynumber: 2.7 Consensus size: 55
72134077 CTAAAGTTTC
* *
72134087 TAAGGCAAGGATACTATGTAAAACCATGTCAAGACATGCCATTGATAAGTTACTA
1 TAAGGCAAGGATACCATGTAAGACCATGTCAAGACATGCCATTGATAAGTTACTA
* * * * * * **
72134142 TAAGGCAAAGTTCCCATGTAAGACCAT-TCCAAGGCATGGCATTGGTGGGTT-C-A
1 TAAGGCAAGGATACCATGTAAGACCATGT-CAAGACATGCCATTGATAAGTTACTA
*
72134195 TAAGGCAAGGATACCATGTAAGACCATGTCGAGACATG
1 TAAGGCAAGGATACCATGTAAGACCATGTCAAGACATG
72134233 GCAATGGTAA
Statistics
Matches: 74, Mismatches: 15, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
53 32 0.43
54 3 0.04
55 39 0.53
ACGTcount: A:0.35, C:0.18, G:0.23, T:0.23
Consensus pattern (55 bp):
TAAGGCAAGGATACCATGTAAGACCATGTCAAGACATGCCATTGATAAGTTACTA
Found at i:72134233 original size:53 final size:55
Alignment explanation
Indices: 72134087--72134245 Score: 180
Period size: 53 Copynumber: 2.9 Consensus size: 55
72134077 CTAAAGTTTC
* * * *
72134087 TAAGGCAAGGATACTATGTAAAACCATGTCAAGACATGCCATTGATAAGTTACTA
1 TAAGGCAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTACTA
* * * * **
72134142 TAAGGCAAAGTTCCCATGTAAGACCAT-TCCAAGGCATGGCATTGGTGGGTT-C-A
1 TAAGGCAAGGATACCATGTAAGACCATGT-CAAGACATGGCATTGGTAAGTTACTA
* *
72134195 TAAGGCAAGGATACCATGTAAGACCATGTCGAGACATGGCAATGGTAAGTT
1 TAAGGCAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTT
72134246 TCAAAGGGAT
Statistics
Matches: 84, Mismatches: 18, Indels: 6
0.78 0.17 0.06
Matches are distributed among these distances:
53 42 0.50
54 3 0.04
55 39 0.46
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.24
Consensus pattern (55 bp):
TAAGGCAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTACTA
Found at i:72139329 original size:45 final size:45
Alignment explanation
Indices: 72139160--72139318 Score: 161
Period size: 45 Copynumber: 3.7 Consensus size: 45
72139150 ATATCGTACA
* * * *
72139160 ATGCCAACGTCCCAGACGTGTTCTTACATGTAATCACATAT-T-A
1 ATGCCAACGTCCCAGAAGTGGTCTTACACGTAATCACATATATCG
**
72139203 ATGCCATTGTCCCAGATAG-GGTCTTACACG-AATCA-A-ATA-CG
1 ATGCCAACGTCCCAGA-AGTGGTCTTACACGTAATCACATATATCG
* * * *
72139244 ATGCCAATGTCCCAGAAATGATCTTACACGTAACCACATATATCG
1 ATGCCAACGTCCCAGAAGTGGTCTTACACGTAATCACATATATCG
*
72139289 ATGCCAACGTCCCAGACGTGGTCTTACACG
1 ATGCCAACGTCCCAGAAGTGGTCTTACACG
72139319 AGAACACATA
Statistics
Matches: 94, Mismatches: 14, Indels: 14
0.77 0.11 0.11
Matches are distributed among these distances:
40 3 0.03
41 26 0.28
42 9 0.10
43 24 0.26
44 4 0.04
45 28 0.30
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (45 bp):
ATGCCAACGTCCCAGAAGTGGTCTTACACGTAATCACATATATCG
Found at i:72298545 original size:15 final size:15
Alignment explanation
Indices: 72298527--72298555 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
72298517 AACCGAATAA
72298527 AGAAATCCAAGATAG
1 AGAAATCCAAGATAG
72298542 AGAAATCCAAGATA
1 AGAAATCCAAGATA
72298556 CATCTTACTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.55, C:0.14, G:0.17, T:0.14
Consensus pattern (15 bp):
AGAAATCCAAGATAG
Found at i:72304022 original size:15 final size:15
Alignment explanation
Indices: 72304002--72304030 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
72303992 AACCGAATAA
72304002 AGAAATCCAAGATAG
1 AGAAATCCAAGATAG
72304017 AGAAATCCAAGATA
1 AGAAATCCAAGATA
72304031 CATTACTATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.55, C:0.14, G:0.17, T:0.14
Consensus pattern (15 bp):
AGAAATCCAAGATAG
Found at i:72307025 original size:46 final size:46
Alignment explanation
Indices: 72306958--72307130 Score: 174
Period size: 46 Copynumber: 3.7 Consensus size: 46
72306948 TGTAACCCGC
*
72306958 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGGCATTCGCAT
* * *
72307004 CCATAAGTGAACTTGGACTCAACTCAACGAGCTC-GG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGGCATTCGC-A--T
* *** * *
72307050 ACATCTCTCGAACTCGGACTCAACTCAACGA-TGTCAGACATTTGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGT-TCAGGCATTCGCAT
*
72307097 CCATAAGTGAACTGGGACTCAACTCAACGAGTTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC
72307131 GGATGCCCAA
Statistics
Matches: 100, Mismatches: 18, Indels: 18
0.74 0.13 0.13
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 60 0.60
47 29 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGGCATTCGCAT
Found at i:72307073 original size:93 final size:93
Alignment explanation
Indices: 72306966--72307137 Score: 283
Period size: 93 Copynumber: 1.8 Consensus size: 93
72306956 GCCCATAAGT
* * *
72306966 GAACTCGGACTCAACTCAACGA-GTTCAGGCGTTCGCATCCATAAGTGAACTTGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGATG-TCAGACATTCGCATCCATAAGTGAACTGGGACTCAACTCA
72307030 ACGAGCTCGGATGCCTAGTTACATCTCTC
65 ACGAGCTCGGATGCCTAGTTACATCTCTC
*
72307059 GAACTCGGACTCAACTCAACGATGTCAGACATTTGCATCCATAAGTGAACTGGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGATGTCAGACATTCGCATCCATAAGTGAACTGGGACTCAACTCAA
*
72307124 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
72307138 CAAACATCCT
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
93 72 0.99
94 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGATGTCAGACATTCGCATCCATAAGTGAACTGGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:72311487 original size:6 final size:7
Alignment explanation
Indices: 72311477--72311503 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
72311467 TAGTTTTCCT
72311477 TTTTTTC
1 TTTTTTC
72311484 TTTTTTC
1 TTTTTTC
72311491 TTTTTTC
1 TTTTTTC
72311498 TTTTTT
1 TTTTTT
72311504 GCCAATGAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (7 bp):
TTTTTTC
Found at i:72313380 original size:25 final size:25
Alignment explanation
Indices: 72313351--72313400 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
72313341 CAATGAAAAG
*
72313351 CTAAAGCTTTAGATTAGTTTATCTC
1 CTAAAGCTTTAAATTAGTTTATCTC
72313376 CTAAAGCTTTAAATTAGTTTATCTC
1 CTAAAGCTTTAAATTAGTTTATCTC
72313401 GTTTCTATGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.30, C:0.16, G:0.10, T:0.44
Consensus pattern (25 bp):
CTAAAGCTTTAAATTAGTTTATCTC
Found at i:72323920 original size:43 final size:42
Alignment explanation
Indices: 72323821--72323940 Score: 134
Period size: 43 Copynumber: 2.8 Consensus size: 42
72323811 AGGGTTACTA
* **
72323821 AGATTACGTATAAGACCATATCTGAGATATGGCATCGATATG
1 AGATTACGTATAAGACCATATCTGGGATATGGCATCGATACC
* * * *
72323863 AGACTT-CGTGTAAGAACATAGCTGGGCTATTGGCATCGATACC
1 AGA-TTACGTATAAGACCATATCTGGGATA-TGGCATCGATACC
* *
72323906 AGATTACATATAAGACCATATCTGGGATATAGCAT
1 AGATTACGTATAAGACCATATCTGGGATATGGCAT
72323941 TGGTATGGTA
Statistics
Matches: 62, Mismatches: 13, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
42 28 0.45
43 34 0.55
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.28
Consensus pattern (42 bp):
AGATTACGTATAAGACCATATCTGGGATATGGCATCGATACC
Found at i:72325816 original size:53 final size:54
Alignment explanation
Indices: 72325731--72325937 Score: 200
Period size: 53 Copynumber: 3.8 Consensus size: 54
72325721 TTTCTTTTTA
* * *
72325731 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-G
1 AACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * *
72325784 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATCG
1 AACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * ** * * * *
72325838 TAGTCTATCAAGGCCATGTATTGACATGGTCCTACATGATTTCCTTGCCTTATAA
1 AACTC-ACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * *
72325893 AACTTACCAATGCCATTCCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
72325938 AAACCCTAAT
Statistics
Matches: 119, Mismatches: 33, Indels: 3
0.77 0.21 0.02
Matches are distributed among these distances:
53 47 0.39
54 34 0.29
55 38 0.32
ACGTcount: A:0.21, C:0.25, G:0.17, T:0.36
Consensus pattern (54 bp):
AACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:72328864 original size:42 final size:42
Alignment explanation
Indices: 72328806--72328996 Score: 140
Period size: 43 Copynumber: 4.5 Consensus size: 42
72328796 CCAATGCCTC
* * * *
72328806 TGTCCCAAACAGGGTCTTACACG-AAATCAGATGCGATACAGA
1 TGTCCCAGACATGGTCTTACACGTAAATCAGAT-CGACACCGA
* ** *
72328848 TGTCCCAGACATGGTCTTATACGTAAATCTCA-ATCGAGGCCTA
1 TGTCCCAGACATGGTCTTACACGTAAA--TCAGATCGACACCGA
* * *
72328891 TGTCCTAGACACGGGCTTACACG-AAATCAGATACGACACCGA
1 TGTCCCAGACATGGTCTTACACGTAAATCAGAT-CGACACCGA
* * **
72328933 TGTCTCAGACATGGTCTTATACGTAAATCTCA-ATCGAGGCCTG-
1 TGTCCCAGACATGGTCTTACACGTAAA--TCAGATCGACACC-GA
*
72328976 TGTCCCAGACACGGTCTTACA
1 TGTCCCAGACATGGTCTTACA
72328997 TGACATCTCA
Statistics
Matches: 116, Mismatches: 24, Indels: 17
0.74 0.15 0.11
Matches are distributed among these distances:
40 3 0.03
41 2 0.02
42 47 0.41
43 53 0.46
44 5 0.04
45 6 0.05
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (42 bp):
TGTCCCAGACATGGTCTTACACGTAAATCAGATCGACACCGA
Found at i:72328895 original size:43 final size:43
Alignment explanation
Indices: 72328847--72328994 Score: 167
Period size: 43 Copynumber: 3.5 Consensus size: 43
72328837 TGCGATACAG
*
72328847 ATGTCCCAGACATGGTCTTATACGTAAATCTCAATCGAGGCCT
1 ATGTCCCAGACACGGTCTTATACGTAAATCTCAATCGAGGCCT
* * * ** *
72328890 ATGTCCTAGACACGGGCTTACACG-AAA--TCAGATACGACACCG
1 ATGTCCCAGACACGGTCTTATACGTAAATCTCA-AT-CGAGGCCT
* *
72328932 ATGTCTCAGACATGGTCTTATACGTAAATCTCAATCGAGGCCT
1 ATGTCCCAGACACGGTCTTATACGTAAATCTCAATCGAGGCCT
*
72328975 GTGTCCCAGACACGGTCTTA
1 ATGTCCCAGACACGGTCTTA
72328995 CATGACATCT
Statistics
Matches: 82, Mismatches: 18, Indels: 10
0.75 0.16 0.09
Matches are distributed among these distances:
40 3 0.04
41 2 0.02
42 27 0.33
43 45 0.55
44 2 0.02
45 3 0.04
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.25
Consensus pattern (43 bp):
ATGTCCCAGACACGGTCTTATACGTAAATCTCAATCGAGGCCT
Found at i:72328910 original size:85 final size:85
Alignment explanation
Indices: 72328801--72328996 Score: 295
Period size: 85 Copynumber: 2.3 Consensus size: 85
72328791 CAATACCAAT
* * * *
72328801 GCCTCTGTCCCAAACA-GGGTCTTACACGAAATCAGATGCGATACAGATGTCCCAGACATGGTCT
1 GCCTATGTCCCAGACACGGG-CTTACACGAAATCAGATACGACACAGATGTCCCAGACATGGTCT
72328865 TATACGTAAATCTCAATCGAG
65 TATACGTAAATCTCAATCGAG
* * *
72328886 GCCTATGTCCTAGACACGGGCTTACACGAAATCAGATACGACACCGATGTCTCAGACATGGTCTT
1 GCCTATGTCCCAGACACGGGCTTACACGAAATCAGATACGACACAGATGTCCCAGACATGGTCTT
72328951 ATACGTAAATCTCAATCGAG
66 ATACGTAAATCTCAATCGAG
* *
72328971 GCCTGTGTCCCAGACACGGTCTTACA
1 GCCTATGTCCCAGACACGGGCTTACA
72328997 TGACATCTCA
Statistics
Matches: 100, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
85 97 0.97
86 3 0.03
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.23
Consensus pattern (85 bp):
GCCTATGTCCCAGACACGGGCTTACACGAAATCAGATACGACACAGATGTCCCAGACATGGTCTT
ATACGTAAATCTCAATCGAG
Found at i:72339603 original size:31 final size:31
Alignment explanation
Indices: 72339565--72339623 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
72339555 CTTGTAGCCA
*
72339565 AAGCTACCACTATTCACTGATCAGGTAGTCG
1 AAGCTACCACTATTCACTGATCAAGTAGTCG
* *
72339596 AAGCTACCATTTTTCACTGATCAAGTAG
1 AAGCTACCACTATTCACTGATCAAGTAG
72339624 CCGATGATCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.29
Consensus pattern (31 bp):
AAGCTACCACTATTCACTGATCAAGTAGTCG
Found at i:72339662 original size:30 final size:31
Alignment explanation
Indices: 72339628--72339703 Score: 109
Period size: 31 Copynumber: 2.5 Consensus size: 31
72339618 AAGTAGCCGA
* *
72339628 TGATCAGGTAGCTGAAGC-ACCACTTTTCAT
1 TGATCAGGTAGCCGAAGCTACCACTTTTCAC
*
72339658 TGATCAGGTAGCCGAAGCTACCATTTTTCAC
1 TGATCAGGTAGCCGAAGCTACCACTTTTCAC
*
72339689 TGATCAAGTAGCCGA
1 TGATCAGGTAGCCGA
72339704 TGATCAGGTA
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
30 17 0.41
31 24 0.59
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.28
Consensus pattern (31 bp):
TGATCAGGTAGCCGAAGCTACCACTTTTCAC
Found at i:72339669 original size:45 final size:46
Alignment explanation
Indices: 72339582--72339672 Score: 132
Period size: 45 Copynumber: 2.0 Consensus size: 46
72339572 CACTATTCAC
*
72339582 TGATCAGGTAGTCGAAGCTACCATTTTTCACTGATCAAGTAGCCGA
1 TGATCAGGTAGTCGAAGCTACCACTTTTCACTGATCAAGTAGCCGA
* *
72339628 TGATCAGGTAG-CTGAAGC-ACCACTTTTCATTGATCAGGTAGCCGA
1 TGATCAGGTAGTC-GAAGCTACCACTTTTCACTGATCAAGTAGCCGA
72339673 AGCTACCATT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
45 25 0.61
46 16 0.39
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.27
Consensus pattern (46 bp):
TGATCAGGTAGTCGAAGCTACCACTTTTCACTGATCAAGTAGCCGA
Found at i:72339696 original size:76 final size:77
Alignment explanation
Indices: 72339558--72339731 Score: 296
Period size: 76 Copynumber: 2.3 Consensus size: 77
72339548 CTTGTCACTT
* *
72339558 GTAGCCAAAGCTACCACTATTCACTGATCAGGTAGTCGAAGCTACCATTTTTCACTGATCAAGTA
1 GTAGCCAAAGCTACCACTTTTCACTGATCAGGTAGCCGAAGCTACCATTTTTCACTGATCAAGTA
72339623 GCCGATGATCAG
66 GCCGATGATCAG
** *
72339635 GTAGCTGAAGC-ACCACTTTTCATTGATCAGGTAGCCGAAGCTACCATTTTTCACTGATCAAGTA
1 GTAGCCAAAGCTACCACTTTTCACTGATCAGGTAGCCGAAGCTACCATTTTTCACTGATCAAGTA
72339699 GCCGATGATCAG
66 GCCGATGATCAG
72339711 GTAGCCAAAGCTACCACTTTT
1 GTAGCCAAAGCTACCACTTTT
72339732 TACTTGTCAT
Statistics
Matches: 89, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
76 71 0.80
77 18 0.20
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.27
Consensus pattern (77 bp):
GTAGCCAAAGCTACCACTTTTCACTGATCAGGTAGCCGAAGCTACCATTTTTCACTGATCAAGTA
GCCGATGATCAG
Found at i:72339805 original size:50 final size:50
Alignment explanation
Indices: 72339711--72339900 Score: 299
Period size: 50 Copynumber: 3.8 Consensus size: 50
72339701 CGATGATCAG
* * * *
72339711 GTAGCCAAAGCTACCACTTTTTACTTGTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCAAAGCTATCACTTATCACTT-TCACTTGTCCTTGATCAGATAAGT
*
72339762 GTAGCCAAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCAAAGCTATCACTTATCACTTTCACTTGTCCTTGATCAGATAAGT
*
72339812 GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCCTTGATCAGATAAGT
1 GTAGCCAAAGCTATCACTTATCACTTTCACTTGTCCTTGATCAGATAAGT
* *
72339862 GTAGCCGAAGCTATCACTTATCACTTTCACTTATCCTTG
1 GTAGCCAAAGCTATCACTTATCACTTTCACTTGTCCTTG
72339901 TTGCCATGAT
Statistics
Matches: 133, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
50 110 0.83
51 23 0.17
ACGTcount: A:0.26, C:0.24, G:0.15, T:0.36
Consensus pattern (50 bp):
GTAGCCAAAGCTATCACTTATCACTTTCACTTGTCCTTGATCAGATAAGT
Found at i:72340236 original size:6 final size:6
Alignment explanation
Indices: 72340225--72340269 Score: 90
Period size: 6 Copynumber: 7.5 Consensus size: 6
72340215 CGAGTCATTC
72340225 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATA
1 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATA
72340270 ATTTTCCTCC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 39 1.00
ACGTcount: A:0.36, C:0.00, G:0.16, T:0.49
Consensus pattern (6 bp):
ATATGT
Found at i:72348613 original size:20 final size:20
Alignment explanation
Indices: 72348590--72348629 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
72348580 TCAACAAAGC
72348590 ATCGCTATAAACAACGAATT
1 ATCGCTATAAACAACGAATT
*
72348610 ATCGCTGTAAACAACGAATT
1 ATCGCTATAAACAACGAATT
72348630 CTTTAACTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.42, C:0.20, G:0.12, T:0.25
Consensus pattern (20 bp):
ATCGCTATAAACAACGAATT
Found at i:72352755 original size:42 final size:41
Alignment explanation
Indices: 72352698--72352902 Score: 157
Period size: 43 Copynumber: 4.9 Consensus size: 41
72352688 GTAATTCAAT
* * * *
72352698 ATCGATGCCTCTGTCCTAGACAGGGTCTTACACGAAA-TCA
1 ATCGAGGCCTGTGTCCCAGACACGGTCTTACACGAAACTCA
* * * *
72352738 GATACGATG-CTGATGTCCCAGACATGGTCTTATACATAAATCTCA
1 -AT-CGAGGCCTG-TGTCCCAGACACGGTCTTACAC-GAAA-CTCA
* * *
72352783 ATCGAGGCCTGTATCCCAGACACAGTCTTACAC-AAAATCA
1 ATCGAGGCCTGTGTCCCAGACACGGTCTTACACGAAACTCA
* * * *
72352823 GATACGATGCC-GATGTCCCAAACATGGTCTTATACGTAAATCTCA
1 -AT-CGAGGCCTG-TGTCCCAGACACGGTCTTACACG-AAA-CTCA
72352868 ATCGAGGCCTGTGTCCCAGACACGGTCTTACACGA
1 ATCGAGGCCTGTGTCCCAGACACGGTCTTACACGA
72352903 TATCTTAGAC
Statistics
Matches: 129, Mismatches: 22, Indels: 25
0.73 0.12 0.14
Matches are distributed among these distances:
40 3 0.02
41 10 0.08
42 48 0.37
43 51 0.40
44 11 0.09
45 6 0.05
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (41 bp):
ATCGAGGCCTGTGTCCCAGACACGGTCTTACACGAAACTCA
Found at i:72352801 original size:43 final size:43
Alignment explanation
Indices: 72352751--72352897 Score: 167
Period size: 43 Copynumber: 3.4 Consensus size: 43
72352741 ACGATGCTGA
*
72352751 TGTCCCAGACATGGTCTTATACATAAATCTCAATCGAGGCCTG
1 TGTCCCAGACACGGTCTTATACATAAATCTCAATCGAGGCCTG
* * * *
72352794 TATCCCAGACACAGTCTTACACA-AAA--TCAGATACGATGCC-G
1 TGTCCCAGACACGGTCTTATACATAAATCTCA-AT-CGAGGCCTG
* * *
72352835 ATGTCCCAAACATGGTCTTATACGTAAATCTCAATCGAGGCCTG
1 -TGTCCCAGACACGGTCTTATACATAAATCTCAATCGAGGCCTG
72352879 TGTCCCAGACACGGTCTTA
1 TGTCCCAGACACGGTCTTA
72352898 CACGATATCT
Statistics
Matches: 83, Mismatches: 14, Indels: 14
0.75 0.13 0.13
Matches are distributed among these distances:
40 3 0.04
41 3 0.04
42 26 0.31
43 45 0.54
44 3 0.04
45 3 0.04
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (43 bp):
TGTCCCAGACACGGTCTTATACATAAATCTCAATCGAGGCCTG
Found at i:72352814 original size:85 final size:85
Alignment explanation
Indices: 72352722--72352902 Score: 308
Period size: 85 Copynumber: 2.1 Consensus size: 85
72352712 CCTAGACAGG
* *
72352722 GTCTTACACGAAATCAGATACGATGCTGATGTCCCAGACATGGTCTTATACATAAATCTCAATCG
1 GTCTTACACGAAATCAGATACGATGCCGATGTCCCAAACATGGTCTTATACATAAATCTCAATCG
72352787 AGGCCTGTATCCCAGACACA
66 AGGCCTGTATCCCAGACACA
* *
72352807 GTCTTACACAAAATCAGATACGATGCCGATGTCCCAAACATGGTCTTATACGTAAATCTCAATCG
1 GTCTTACACGAAATCAGATACGATGCCGATGTCCCAAACATGGTCTTATACATAAATCTCAATCG
* *
72352872 AGGCCTGTGTCCCAGACACG
66 AGGCCTGTATCCCAGACACA
72352892 GTCTTACACGA
1 GTCTTACACGA
72352903 TATCTTAGAC
Statistics
Matches: 89, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
85 89 1.00
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (85 bp):
GTCTTACACGAAATCAGATACGATGCCGATGTCCCAAACATGGTCTTATACATAAATCTCAATCG
AGGCCTGTATCCCAGACACA
Found at i:72355200 original size:40 final size:40
Alignment explanation
Indices: 72355145--72355401 Score: 367
Period size: 40 Copynumber: 6.5 Consensus size: 40
72355135 GGATGATAAT
* * *
72355145 CGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-TC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TATC
*
72355185 CGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
72355225 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
*
72355265 CGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
*
72355305 CGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
* * *
72355345 CGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATA-C
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATC
* * *
72355384 CCGGTTAAATCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
72355402 TACTTGGATT
Statistics
Matches: 200, Mismatches: 15, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
39 18 0.09
40 182 0.91
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.26
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
Found at i:72363428 original size:40 final size:40
Alignment explanation
Indices: 72363333--72363589 Score: 360
Period size: 40 Copynumber: 6.5 Consensus size: 40
72363323 TGGATGATAA
* * *
72363333 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
72363373 -CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
72363412 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
72363452 TCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
72363492 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
72363532 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* * *
72363571 CCCGGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
72363590 TACTTGGCTT
Statistics
Matches: 199, Mismatches: 15, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
38 1 0.01
39 51 0.26
40 147 0.74
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:72368577 original size:43 final size:41
Alignment explanation
Indices: 72368528--72368678 Score: 160
Period size: 43 Copynumber: 3.5 Consensus size: 41
72368518 TCCCAAACGT
* * * * *
72368528 GGTCTTACATGTAACCTCATATCAATGCC-ACTGTCTCAGAC
1 GGTCTTACACGTAATCACATATCGATGCCAAC-GTCCCAGAC
* *
72368569 AGGATCTTACTCGTAAACACATATCGATGCCAACGTCCCAGAC
1 -GG-TCTTACACGTAATCACATATCGATGCCAACGTCCCAGAC
72368612 GTGGTCTTACACGTAATCACATATCGATGCCAACGTCCCAGAC
1 --GGTCTTACACGTAATCACATATCGATGCCAACGTCCCAGAC
*
72368655 TTGGTCTTACACGTAATCTCATAT
1 --GGTCTTACACGTAATCACATAT
72368679 TGATATCACA
Statistics
Matches: 95, Mismatches: 11, Indels: 5
0.86 0.10 0.05
Matches are distributed among these distances:
42 2 0.02
43 89 0.94
44 4 0.04
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.27
Consensus pattern (41 bp):
GGTCTTACACGTAATCACATATCGATGCCAACGTCCCAGAC
Found at i:72368678 original size:86 final size:86
Alignment explanation
Indices: 72368513--72368670 Score: 203
Period size: 86 Copynumber: 1.8 Consensus size: 86
72368503 CGTACAATGT
* * *
72368513 CAACATCCCAAACGTGGTCTTACATGTAACCTCATATCAATGCCACTGTCTCAGACAGGATCTTA
1 CAACATCCCAAACGTGGTCTTACACGTAACCACATATCAATGCCACTGTCCCAGACAGGATCTTA
*
72368578 CTCGTAAACACATATCGATGC
66 CACGTAAACACATATCGATGC
* * * * *
72368599 CAACGTCCCAGACGTGGTCTTACACGTAATCACATATCGATGCCAAC-GTCCCAGACTTGG-TCT
1 CAACATCCCAAACGTGGTCTTACACGTAACCACATATCAATGCC-ACTGTCCCAGAC-AGGATCT
72368662 TACACGTAA
64 TACACGTAA
72368671 TCTCATATTG
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
86 57 0.93
87 4 0.07
ACGTcount: A:0.30, C:0.30, G:0.16, T:0.25
Consensus pattern (86 bp):
CAACATCCCAAACGTGGTCTTACACGTAACCACATATCAATGCCACTGTCCCAGACAGGATCTTA
CACGTAAACACATATCGATGC
Found at i:72370365 original size:19 final size:19
Alignment explanation
Indices: 72370329--72370367 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
72370319 CCTAAAATTC
72370329 TCACTATTTCACACACTTA
1 TCACTATTTCACACACTTA
*
72370348 TCACTTATTTTACA-ACTTA
1 TCAC-TATTTCACACACTTA
72370367 T
1 T
72370368 GCAAAATAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.31, C:0.26, G:0.00, T:0.44
Consensus pattern (19 bp):
TCACTATTTCACACACTTA
Found at i:72371524 original size:26 final size:26
Alignment explanation
Indices: 72371495--72371547 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
72371485 CGGGTAGACA
72371495 CATGGGCATGTGTCTAGGCCGTGTGT
1 CATGGGCATGTGTCTAGGCCGTGTGT
*
72371521 CATGGGCATGTGTCTCGGCCGTGTGT
1 CATGGGCATGTGTCTAGGCCGTGTGT
72371547 C
1 C
72371548 CCCTGCACCT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.09, C:0.23, G:0.38, T:0.30
Consensus pattern (26 bp):
CATGGGCATGTGTCTAGGCCGTGTGT
Found at i:72374018 original size:9 final size:9
Alignment explanation
Indices: 72374004--72374038 Score: 61
Period size: 9 Copynumber: 3.9 Consensus size: 9
72373994 GTTAAACGAA
72374004 TCGAGTTAT
1 TCGAGTTAT
*
72374013 TCGAGTTAA
1 TCGAGTTAT
72374022 TCGAGTTAT
1 TCGAGTTAT
72374031 TCGAGTTA
1 TCGAGTTA
72374039 ACTCGATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.26, C:0.11, G:0.23, T:0.40
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:72374025 original size:18 final size:18
Alignment explanation
Indices: 72374002--72374044 Score: 77
Period size: 18 Copynumber: 2.3 Consensus size: 18
72373992 GAGTTAAACG
72374002 AATCGAGTTATTCGAGTT
1 AATCGAGTTATTCGAGTT
72374020 AATCGAGTTATTCGAGTT
1 AATCGAGTTATTCGAGTT
72374038 AACTCGA
1 AA-TCGA
72374045 TTTTTTTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 20 0.83
19 4 0.17
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (18 bp):
AATCGAGTTATTCGAGTT
Found at i:72374105 original size:9 final size:9
Alignment explanation
Indices: 72374088--72374124 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
72374078 TAAGTTTTCG
72374088 AATTCGAAT
1 AATTCGAAT
*
72374097 AACTCGAAT
1 AATTCGAAT
72374106 AATTCGAAT
1 AATTCGAAT
72374115 AATTCGAAT
1 AATTCGAAT
72374124 A
1 A
72374125 TTAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:72375824 original size:40 final size:40
Alignment explanation
Indices: 72375726--72375988 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
72375716 TCCTCGTTCA
* * * * *
72375726 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
72375765 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
72375805 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
72375845 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
72375885 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
72375925 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
72375965 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
72375989 CAGCATTCAA
Statistics
Matches: 198, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
39 37 0.19
40 153 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:72383770 original size:40 final size:40
Alignment explanation
Indices: 72383672--72383934 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
72383662 TCCTCGTTCA
* * * * *
72383672 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
72383711 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
72383751 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
72383791 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
72383831 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
72383871 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
72383911 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
72383935 CAGCATTCAA
Statistics
Matches: 200, Mismatches: 20, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 37 0.19
40 155 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:72388112 original size:39 final size:41
Alignment explanation
Indices: 72388057--72388140 Score: 136
Period size: 41 Copynumber: 2.1 Consensus size: 41
72388047 ATTTTCCCAG
72388057 GCACTTTTAATTAATCCT-AAAAAATAAAATGTTCCAGCAT
1 GCACTTTTAATTAATCCTAAAAAAATAAAATGTTCCAGCAT
*
72388097 GCAC-TTTAATTAATCCTAAAAAAAATAAAATGTTTCAGCAT
1 GCACTTTTAATTAATCCT-AAAAAAATAAAATGTTCCAGCAT
72388138 GCA
1 GCA
72388141 AACATAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
39 13 0.32
40 4 0.10
41 24 0.59
ACGTcount: A:0.44, C:0.17, G:0.08, T:0.31
Consensus pattern (41 bp):
GCACTTTTAATTAATCCTAAAAAAATAAAATGTTCCAGCAT
Found at i:72392310 original size:15 final size:15
Alignment explanation
Indices: 72392290--72392320 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
72392280 TGGAGCCAGC
72392290 AGGATTATCTAATAT
1 AGGATTATCTAATAT
72392305 AGGATTATCTAATAT
1 AGGATTATCTAATAT
72392320 A
1 A
72392321 CTCGTTTCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.42, C:0.06, G:0.13, T:0.39
Consensus pattern (15 bp):
AGGATTATCTAATAT
Found at i:72399952 original size:35 final size:35
Alignment explanation
Indices: 72399906--72399972 Score: 125
Period size: 35 Copynumber: 1.9 Consensus size: 35
72399896 AGCAGAGAAA
72399906 ATTGTTATTTTGAAAGGTTCCTTATGCTTCAGTAG
1 ATTGTTATTTTGAAAGGTTCCTTATGCTTCAGTAG
*
72399941 ATTGTTATTTTGAAAGGTTTCTTATGCTTCAG
1 ATTGTTATTTTGAAAGGTTCCTTATGCTTCAG
72399973 CAATAAGGAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.22, C:0.10, G:0.19, T:0.48
Consensus pattern (35 bp):
ATTGTTATTTTGAAAGGTTCCTTATGCTTCAGTAG
Found at i:72402201 original size:25 final size:25
Alignment explanation
Indices: 72402170--72402217 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
72402160 GCTCTCTCTC
*
72402170 GAGCCATATAATGAGAAGCTTATAT
1 GAGCCATATAACGAGAAGCTTATAT
* *
72402195 GAGCCATGTAACGGGAAGCTTAT
1 GAGCCATATAACGAGAAGCTTAT
72402218 CCTGGCTGTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.15, G:0.25, T:0.25
Consensus pattern (25 bp):
GAGCCATATAACGAGAAGCTTATAT
Found at i:72402384 original size:26 final size:26
Alignment explanation
Indices: 72402226--72402385 Score: 81
Period size: 26 Copynumber: 6.4 Consensus size: 26
72402216 ATCCTGGCTG
72402226 TATAACGGGAAGCT--CGTAAGAGCCA
1 TATAACGGGAAGCTCACG-AAGAGCCA
* * *
72402251 TAATTA--GGAAGCTCATG-CGAGCCA
1 T-ATAACGGGAAGCTCACGAAGAGCCA
* *
72402275 -ATAACGGGTAGTTC-CGAAGAGCCA
1 TATAACGGGAAGCTCACGAAGAGCCA
***
72402299 T-TAATCGGGAAGCTTTGGAA-AGCCA
1 TATAA-CGGGAAGCTCACGAAGAGCCA
** **
72402324 T-TAATCAAGAAGCTCATAAAGAGCC-
1 TATAA-CGGGAAGCTCACGAAGAGCCA
*
72402349 TTTAATCGGGAAGCTCACGAAGAGCCA
1 TATAA-CGGGAAGCTCACGAAGAGCCA
72402376 TATAACGGGA
1 TATAACGGGA
72402386 CACTCATAAG
Statistics
Matches: 100, Mismatches: 23, Indels: 23
0.68 0.16 0.16
Matches are distributed among these distances:
22 3 0.03
23 1 0.01
24 28 0.28
25 28 0.28
26 36 0.36
27 4 0.04
ACGTcount: A:0.36, C:0.19, G:0.26, T:0.19
Consensus pattern (26 bp):
TATAACGGGAAGCTCACGAAGAGCCA
Found at i:72417340 original size:29 final size:28
Alignment explanation
Indices: 72417240--72417354 Score: 124
Period size: 29 Copynumber: 4.0 Consensus size: 28
72417230 TACTTGTATC
* * *
72417240 TGGCCCATTAAGCCCAATCATATTCATG
1 TGGCCCATTAGGCCCAATCACATTCATA
* *
72417268 TGGCCCATTAGGCCAAAATCACCTAT-ATA
1 TGGCCCATTAGGCC-CAATCACAT-TCATA
*
72417297 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCC-AATCACATTCATA
* *
72417326 TGGCCCGTTAGGCCCAGTCACATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
72417354 T
1 T
72417355 TCATGCTCAC
Statistics
Matches: 73, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
28 26 0.36
29 46 0.63
30 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.27
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTCATA
Found at i:72420788 original size:48 final size:48
Alignment explanation
Indices: 72420290--72420778 Score: 784
Period size: 48 Copynumber: 10.2 Consensus size: 48
72420280 GCTGAAATTG
* * *
72420290 ATGTATAAGATATGTATATGTGGTAAAGCTGAATGGTTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
*
72420338 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
* * * *
72420386 ATATATAAGATATGTATATGTGGTAAAGCCAAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
* * * * *
72420434 ATATATAAGATATGCATACGTGGTAAAGCCGAATGGATAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
72420482 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
*
72420530 ATGTATGAGATATGTATATGTGGTAAAACCGAATGGCTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
* * *
72420578 ATGTATGAGATATGTATATGTGATAAAGCCGGATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
*
72420626 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
*
72420674 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
72420722 ATGTATGAGATATGTATATGT-GTAAAG-CGAATGGCTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
*
72420768 ATGTAGGAGAT
1 ATGTATGAGAT
72420779 GTGTGTATAT
Statistics
Matches: 413, Mismatches: 28, Indels: 2
0.93 0.06 0.00
Matches are distributed among these distances:
46 29 0.07
47 6 0.01
48 378 0.92
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
Found at i:72420969 original size:37 final size:37
Alignment explanation
Indices: 72420919--72421026 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
72420909 GGAAATATAT
72420919 TTCGGGTAAGACCCGATGACTACGTGTGGAGA-TTATG
1 TTCGGGTAAGACCCGATGACTACGTGTGGAGACTT-TG
72420956 TTCGGGTAAGACCCGATGACTACGTGTGGAGACTTTG
1 TTCGGGTAAGACCCGATGACTACGTGTGGAGACTTTG
* * *
72420993 TCCGGGTAAGACCCGATAACTACGTGTGGGGACT
1 TTCGGGTAAGACCCGATGACTACGTGTGGAGACT
72421027 ATTCGAGCTA
Statistics
Matches: 67, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
37 65 0.97
38 2 0.03
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
TTCGGGTAAGACCCGATGACTACGTGTGGAGACTTTG
Found at i:72424283 original size:29 final size:27
Alignment explanation
Indices: 72424265--72424334 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
72424255 ATATTAAGTC
72424265 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
72424292 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
72424320 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
72424335 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:72424328 original size:28 final size:28
Alignment explanation
Indices: 72424265--72424362 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
72424255 ATATTAAGTC
*
72424265 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
72424292 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
72424320 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
72424349 CGCACACTTAGTGC
1 CGCACACTTAGTGC
72424363 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:72432239 original size:29 final size:27
Alignment explanation
Indices: 72432221--72432290 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
72432211 ATATTAAGTC
72432221 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
72432248 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
72432276 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
72432291 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:72432284 original size:28 final size:28
Alignment explanation
Indices: 72432221--72432318 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
72432211 ATATTAAGTC
*
72432221 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
72432248 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
72432276 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
72432305 CGCACACTTAGTGC
1 CGCACACTTAGTGC
72432319 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:72435865 original size:27 final size:27
Alignment explanation
Indices: 72435835--72435942 Score: 146
Period size: 27 Copynumber: 4.0 Consensus size: 27
72435825 TCCCTTATTA
*
72435835 CAGAATATGCCACAAAGGCTATTCATT
1 CAGAATACGCCACAAAGGCTATTCATT
* *
72435862 CAGAGTACGCCATAAAGGCTATTCATT
1 CAGAATACGCCACAAAGGCTATTCATT
*
72435889 CA-AAGTACGCCATAAAGGCTATTCATT
1 CAGAA-TACGCCACAAAGGCTATTCATT
* *
72435916 CAGAGTACGCCACAAAGGTTATTCATT
1 CAGAATACGCCACAAAGGCTATTCATT
72435943 GTTATCATGG
Statistics
Matches: 72, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
26 1 0.01
27 70 0.97
28 1 0.01
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.26
Consensus pattern (27 bp):
CAGAATACGCCACAAAGGCTATTCATT
Found at i:72438111 original size:42 final size:42
Alignment explanation
Indices: 72438051--72438424 Score: 417
Period size: 42 Copynumber: 8.6 Consensus size: 42
72438041 GAATTCCAAA
* * ** *
72438051 GCCATGTCCCAGACATGGTCTTACATG-GGTCTACATATCGAT
1 GCCATATCCCAGATATGGTCTTACATGAAATCT-CATATCAAT
* * *
72438093 GCCATATCCCAGATATGGTCTTATATGAAATCTCAAGTCGGTGTCGAT
1 GCCATATCCCAGATATGGTCTTACATGAAATCTC-A-----TATCAAT
* * * * ** *
72438141 GCCATGTCCCAAACATGGTCTTACACGGGACCTCATATCAAT
1 GCCATATCCCAGATATGGTCTTACATGAAATCTCATATCAAT
72438183 GCCATATCCCAGATATGGTCTTACATGAAATCTCATATCAAT
1 GCCATATCCCAGATATGGTCTTACATGAAATCTCATATCAAT
72438225 GCCATATCCCAGATATGGTCTTACATGAAATCTCATATCAAT
1 GCCATATCCCAGATATGGTCTTACATGAAATCTCATATCAAT
72438267 GCCATATCCCAGATATGGTCTTACATGAAATCTCATATCAAT
1 GCCATATCCCAGATATGGTCTTACATGAAATCTCATATCAAT
* *
72438309 GCCATATCCTAGATATGGTATTACATGAAATCTCATATCAAT
1 GCCATATCCCAGATATGGTCTTACATGAAATCTCATATCAAT
* * * * * *
72438351 GCCATATCCCATATATGGTATTATATGAAATCACATACCGAGGCCGAC
1 GCCATATCCCAGATATGGTCTTACATGAAATCTCATATC-A-----AT
72438399 GCCATATCCCAGATATGGTCTTACAT
1 GCCATATCCCAGATATGGTCTTACAT
72438425 TGGCACACAT
Statistics
Matches: 285, Mismatches: 34, Indels: 20
0.84 0.10 0.06
Matches are distributed among these distances:
42 223 0.78
43 5 0.02
47 1 0.00
48 56 0.20
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (42 bp):
GCCATATCCCAGATATGGTCTTACATGAAATCTCATATCAAT
Found at i:72438434 original size:48 final size:48
Alignment explanation
Indices: 72438351--72438524 Score: 120
Period size: 48 Copynumber: 3.6 Consensus size: 48
72438341 TCATATCAAT
* * * ** *
72438351 GCCATATCCCATATATGGTATTATATGAAATCACATACCGAGGCCGAC
1 GCCATATCCCAGATATGGTCTTACATGGCATCACATACCAAGGCCGAC
* * *
72438399 GCCATATCCCAGATATGGTCTTACATTGGCA-CACATATCAATGCCGAT
1 GCCATATCCCAGATATGGTCTTACA-TGGCATCACATACCAAGGCCGAC
* * * * * ** *
72438447 GTCATGTCCCAGACATGGTCTTACACTGGC-T-ATCATATCAACGTTGAT
1 GCCATATCCCAGATATGGTCTTACA-TGGCATCA-CATACCAAGGCCGAC
* *
72438495 GCCATGTCCCAGACATGGTCTTACACTGGC
1 GCCATATCCCAGATATGGTCTTACA-TGGC
72438525 TCTCATTAAT
Statistics
Matches: 106, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
47 1 0.01
48 102 0.96
49 3 0.03
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.27
Consensus pattern (48 bp):
GCCATATCCCAGATATGGTCTTACATGGCATCACATACCAAGGCCGAC
Found at i:72438525 original size:48 final size:48
Alignment explanation
Indices: 72438393--72438530 Score: 170
Period size: 48 Copynumber: 2.9 Consensus size: 48
72438383 ACATACCGAG
* * * * * *
72438393 GCCGACGCCATATCCCAGATATGGTCTTACATTGGC-ACACATATCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTA-TCATATCAAC
*
72438441 GCCGATGTCATGTCCCAGACATGGTCTTACACTGGCTATCATATCAAC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATATCAAC
** *
72438489 GTTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCAT
72438531 TAATCATGGT
Statistics
Matches: 78, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
48 77 0.99
49 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.28
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATATCAAC
Found at i:72453628 original size:28 final size:29
Alignment explanation
Indices: 72453534--72453632 Score: 128
Period size: 29 Copynumber: 3.4 Consensus size: 29
72453524 ATGTTACTGA
*
72453534 GCCTAACGGGCCATATAAATGTGATTTGG
1 GCCTAATGGGCCATATAAATGTGATTTGG
* * * *
72453563 GCCCAATGGGCTATATACAGGTGATTTGG
1 GCCTAATGGGCCATATAAATGTGATTTGG
*
72453592 GCCTAATGGGCCATATAAATATGA-TTGG
1 GCCTAATGGGCCATATAAATGTGATTTGG
*
72453620 GCTTAATGGGCCA
1 GCCTAATGGGCCA
72453633 GATACAGGTA
Statistics
Matches: 59, Mismatches: 11, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
28 16 0.27
29 43 0.73
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.27
Consensus pattern (29 bp):
GCCTAATGGGCCATATAAATGTGATTTGG
Found at i:72457460 original size:25 final size:26
Alignment explanation
Indices: 72457432--72457492 Score: 70
Period size: 29 Copynumber: 2.3 Consensus size: 26
72457422 TTTACGGTTT
*
72457432 TGATTTAG-GAGTTGATCGTGGTTAG
1 TGATTTAGAGAGTTGATCGCGGTTAG
*
72457457 TGATTTAAGAAAGGGTTGATCGCGGTTAG
1 TGATTT-AG--AGAGTTGATCGCGGTTAG
72457486 TGATTTA
1 TGATTTA
72457493 AGAAAGGGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
25 6 0.20
26 2 0.07
28 1 0.03
29 21 0.70
ACGTcount: A:0.25, C:0.05, G:0.33, T:0.38
Consensus pattern (26 bp):
TGATTTAGAGAGTTGATCGCGGTTAG
Found at i:72457484 original size:29 final size:29
Alignment explanation
Indices: 72457442--72457507 Score: 123
Period size: 29 Copynumber: 2.3 Consensus size: 29
72457432 TGATTTAGGA
*
72457442 GTTGATCGTGGTTAGTGATTTAAGAAAGG
1 GTTGATCGCGGTTAGTGATTTAAGAAAGG
72457471 GTTGATCGCGGTTAGTGATTTAAGAAAGG
1 GTTGATCGCGGTTAGTGATTTAAGAAAGG
72457500 GTTGATCG
1 GTTGATCG
72457508 TACAAGGTAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.26, C:0.06, G:0.35, T:0.33
Consensus pattern (29 bp):
GTTGATCGCGGTTAGTGATTTAAGAAAGG
Found at i:72457953 original size:29 final size:29
Alignment explanation
Indices: 72457910--72458004 Score: 129
Period size: 29 Copynumber: 3.3 Consensus size: 29
72457900 CATGATTATG
* *
72457910 AATGTGA-CTGGGCCTAACGGGCCATATA
1 AATGTGATTTGGGCCTAATGGGCCATATA
72457938 AATGTGATTTGGGCCTAATGGGCCATATA
1 AATGTGATTTGGGCCTAATGGGCCATATA
* * *
72457967 TAGGTGATTTGGGCCTAATGGGCCATATG
1 AATGTGATTTGGGCCTAATGGGCCATATA
*
72457996 AATATGATT
1 AATGTGATT
72458005 CAGCTTAATG
Statistics
Matches: 58, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
28 7 0.12
29 51 0.88
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (29 bp):
AATGTGATTTGGGCCTAATGGGCCATATA
Found at i:72457990 original size:58 final size:57
Alignment explanation
Indices: 72457918--72458028 Score: 150
Period size: 58 Copynumber: 1.9 Consensus size: 57
72457908 TGAATGTGAC
* ** *
72457918 TGGGCCTAACGGGCCATATAAATGTGATTTGGGCCTAATGGGCCATATATAGGTGATT
1 TGGGCCTAACGGGCCATATAAATATGA-TTCAGCCTAATGGGCCAGATATAGGTGATT
* * *
72457976 TGGGCCTAATGGGCCATATGAATATGATTCAGCTTAATGGGCCAGATATAGGT
1 TGGGCCTAACGGGCCATATAAATATGATTCAGCCTAATGGGCCAGATATAGGT
72458029 ATGTGAAATT
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 22 0.48
58 24 0.52
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (57 bp):
TGGGCCTAACGGGCCATATAAATATGATTCAGCCTAATGGGCCAGATATAGGTGATT
Found at i:72460049 original size:93 final size:92
Alignment explanation
Indices: 72459891--72460060 Score: 322
Period size: 93 Copynumber: 1.8 Consensus size: 92
72459881 GCCCCTAAGT
72459891 GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
72459956 GAGTTCGGATGCCTAGTTACATCTCAC
66 GAGTTCGGATGCCTAGTTACATCTCAC
*
72459983 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
72460048 CGAGTTCGGATGC
65 CGAGTTCGGATGC
72460061 TCAACCATCC
Statistics
Matches: 76, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
92 27 0.36
93 49 0.64
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCAC
Found at i:72460076 original size:46 final size:45
Alignment explanation
Indices: 72459886--72460068 Score: 196
Period size: 45 Copynumber: 4.0 Consensus size: 45
72459876 AACCCGCCCC
* * *
72459886 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGCATGCGCAACCA
72459931 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG-ATGC-CTAGTTA-CA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGCATGCGC-A---ACCA
* * * *
72459977 TCTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 --TAAGTGAACTCGGACTCAACTCAACGAGTTCGG-CATGCGCAACCA
*
72460024 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG-ATGCTCAACCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGCATGCGCAACCA
72460068 T
1 T
72460069 CCTAGTGACA
Statistics
Matches: 115, Mismatches: 12, Indels: 23
0.77 0.08 0.15
Matches are distributed among these distances:
43 1 0.01
44 13 0.11
45 34 0.30
46 30 0.26
47 30 0.26
48 2 0.02
49 4 0.03
50 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGCATGCGCAACCA
Found at i:72460259 original size:22 final size:21
Alignment explanation
Indices: 72460234--72460274 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
72460224 AATAACCACA
*
72460234 AAGCATAATTTCATGATAAAAT
1 AAGCATAATATCAT-ATAAAAT
*
72460256 AAGCATCATATCATATAAA
1 AAGCATAATATCATATAAA
72460275 CAACATTAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 5 0.29
22 12 0.71
ACGTcount: A:0.51, C:0.12, G:0.07, T:0.29
Consensus pattern (21 bp):
AAGCATAATATCATATAAAAT
Found at i:72467561 original size:93 final size:93
Alignment explanation
Indices: 72467433--72467603 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
72467423 GCCCCTAAGT
* * *
72467433 GAACTCGGACTCAACTCAATGAGCTCGAGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCGAGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
72467498 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
72467526 GAACTCGAACTCAACTCAACGAGTTCG-GACATTCGCATCCATAGGTGAACTCGGACTCAACTCA
1 GAACTCGAACTCAACTCAACGAGCTCGAG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCA
72467590 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
72467604 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 1 0.01
93 71 0.99
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGAACTCAACTCAACGAGCTCGAGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:72467599 original size:46 final size:46
Alignment explanation
Indices: 72467430--72467600 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
72467420 CCCGCCCCTA
* * *
72467430 AGTGAACTCGGACTCAACTCAATGAGCTC-GAGCGTTCGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCATCCAT
*
72467475 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-T
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGA-G-C-A-TTCGCATCCAT
* *
72467523 CA-CGAACTCGAACTCAACTCAACGAGTTCGGA-CATTCGCATCCAT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCATCCAT
72467568 AGGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 A-GTGAACTCGGACTCAACTCAACGAGTTCGGA
72467601 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 10, Indels: 20
0.78 0.07 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 3 0.03
45 1 0.01
46 55 0.52
47 30 0.29
48 3 0.03
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCATCCAT
Found at i:72469620 original size:39 final size:38
Alignment explanation
Indices: 72469577--72469696 Score: 143
Period size: 39 Copynumber: 3.1 Consensus size: 38
72469567 CTGGACATAT
* * *
72469577 TTCCAGCACGTAGCCT-CTGGACCTGAAGTCTGGTTATAA
1 TTCCAGCACATAGCCTAC-GGACCT-AAGTCCGGATATAA
* *
72469616 TTCCAGCACATAGCCTACGGACCCCAAGTCCAGATATAA
1 TTCCAGCACATAGCCTACGGA-CCTAAGTCCGGATATAA
*
72469655 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
1 TTCCAGCACATAGCCTACGGA-CCTAAGTCCGGATATAA
72469694 TTC
1 TTC
72469697 ACTGAATGTC
Statistics
Matches: 71, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
39 68 0.96
40 3 0.04
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (38 bp):
TTCCAGCACATAGCCTACGGACCTAAGTCCGGATATAA
Found at i:72485259 original size:27 final size:27
Alignment explanation
Indices: 72485224--72485303 Score: 108
Period size: 26 Copynumber: 3.0 Consensus size: 27
72485214 GGTGACCACA
*
72485224 TAGAGTATGCCACAAAGGTTATTCATT
1 TAGATTATGCCACAAAGGTTATTCATT
* *
72485251 TAGATTATGCCA-AAATGCTATTCATT
1 TAGATTATGCCACAAAGGTTATTCATT
* *
72485277 TAGATTACGCCACAAAGGTAATTCATT
1 TAGATTATGCCACAAAGGTTATTCATT
72485304 GTTGTTGTAT
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
26 23 0.51
27 22 0.49
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.34
Consensus pattern (27 bp):
TAGATTATGCCACAAAGGTTATTCATT
Found at i:72489526 original size:17 final size:17
Alignment explanation
Indices: 72489487--72489529 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
72489477 ATATGATTGT
**
72489487 ATTGA-ATTTGATGTTA
1 ATTGACATTTGATGGAA
*
72489503 ATGGACATTTGATGGAA
1 ATTGACATTTGATGGAA
72489520 ATTGACATTT
1 ATTGACATTT
72489530 TAAATGAAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
16 4 0.18
17 18 0.82
ACGTcount: A:0.33, C:0.05, G:0.21, T:0.42
Consensus pattern (17 bp):
ATTGACATTTGATGGAA
Found at i:72493018 original size:25 final size:25
Alignment explanation
Indices: 72492979--72493027 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
72492969 TGATAAAACT
*
72492979 CGAGTTCTGAAGTTAATTAGGATCC
1 CGAGTTATGAAGTTAATTAGGATCC
*
72493004 CGAGTTATGAGGTTAATTAGGATC
1 CGAGTTATGAAGTTAATTAGGATC
72493028 ACTAAAGTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.29, C:0.12, G:0.27, T:0.33
Consensus pattern (25 bp):
CGAGTTATGAAGTTAATTAGGATCC
Found at i:72499160 original size:45 final size:48
Alignment explanation
Indices: 72499073--72499165 Score: 138
Period size: 45 Copynumber: 2.0 Consensus size: 48
72499063 GATACTAGGG
* *
72499073 AATCTCGCACCCTAAGTGCCAATATATATAGCCGAAGTTATCTCAATA
1 AATCTCGCACCCTAAGTGCCAATATACATAGCCGAAGCTATCTCAATA
*
72499121 AATCTTGCA-CCTAAGTGCC-A-ATACATAGCCGAAGCTATCTCAATA
1 AATCTCGCACCCTAAGTGCCAATATACATAGCCGAAGCTATCTCAATA
72499166 TCATATCTCA
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
45 23 0.55
46 1 0.02
47 10 0.24
48 8 0.19
ACGTcount: A:0.35, C:0.26, G:0.13, T:0.26
Consensus pattern (48 bp):
AATCTCGCACCCTAAGTGCCAATATACATAGCCGAAGCTATCTCAATA
Found at i:72504275 original size:40 final size:40
Alignment explanation
Indices: 72504231--72504459 Score: 395
Period size: 40 Copynumber: 5.7 Consensus size: 40
72504221 GCTACTTGCT
*
72504231 CAAATGCCTTCGGGACTTAGCCCGGTTATAGCAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
72504271 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
72504311 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
72504351 CAAATGCCTTCAGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
72504391 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTGGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
72504431 CAAATGCCTTCGGGACTTAGCCCGATTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
72504460 CATCCGAATA
Statistics
Matches: 178, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 178 1.00
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:72511489 original size:40 final size:40
Alignment explanation
Indices: 72511445--72511672 Score: 368
Period size: 40 Copynumber: 5.7 Consensus size: 40
72511435 GCTACTTGCT
72511445 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
72511485 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTTGTA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
72511525 CAAATGCCTTTGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
**
72511565 CAAATGCCTTAAGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
72511605 C-AATGCCTTCGGGACTTAGCCCGGATATAGTAACTGGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
72511644 CAAATGCCTTCGGGACTTAGCCCGATTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
72511673 CATCCGAATA
Statistics
Matches: 172, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
39 35 0.20
40 137 0.80
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:72511559 original size:80 final size:80
Alignment explanation
Indices: 72511413--72511667 Score: 376
Period size: 80 Copynumber: 3.2 Consensus size: 80
72511403 AAACCAAGTA
*
72511413 CCTTC-GGATTTAG-CCGGATATAGCT-ACTTGCT-CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTTG-TACAAATGCCTTCGGGACTTAGCCCGGTTAT
72511474 AGTAACTCGCACAAATG
64 AGTAACTCGCACAAATG
*
72511491 CCTTCGGGACTTAGCCCGGATATAGTAACTTGTACAAATGCCTTTGGGACTTAGCCCGGTTATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTTGTACAAATGCCTTCGGGACTTAGCCCGGTTATAG
72511556 TAACTCGCACAAATG
66 TAACTCGCACAAATG
** * * * *
72511571 CCTTAAGGACTTAGCCCGGTTATAGTAACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTTGTACAAATGCCTTCGGGACTTAGCCCGGTTATAG
*
72511635 TAACTGGCACAAATG
66 TAACTCGCACAAATG
72511650 CCTTCGGGACTTAGCCCG
1 CCTTCGGGACTTAGCCCG
72511668 ATTATCATCC
Statistics
Matches: 161, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
78 5 0.03
79 66 0.41
80 90 0.56
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTTGTACAAATGCCTTCGGGACTTAGCCCGGTTATAG
TAACTCGCACAAATG
Found at i:72514334 original size:42 final size:42
Alignment explanation
Indices: 72514256--72514337 Score: 123
Period size: 42 Copynumber: 2.0 Consensus size: 42
72514246 GATTAACGGG
*
72514256 ATATGAGATTCGTGTAAGACCATGTCTGGGACATTAGCATCT
1 ATATGAGATTCGTGTAAGACCATGTCTGAGACATTAGCATCT
72514298 ATATGAGATTCGTGTAAGACCATAG-CTGAG-CTATTAGCAT
1 ATATGAGATTCGTGTAAGACCAT-GTCTGAGAC-ATTAGCAT
72514338 TGATATACTA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
41 1 0.03
42 35 0.95
43 1 0.03
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.30
Consensus pattern (42 bp):
ATATGAGATTCGTGTAAGACCATGTCTGAGACATTAGCATCT
Found at i:72514873 original size:16 final size:16
Alignment explanation
Indices: 72514852--72514883 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
72514842 AAACTTGTGA
*
72514852 AGCTTTGTTAATTATG
1 AGCTTTGCTAATTATG
72514868 AGCTTTGCTAATTATG
1 AGCTTTGCTAATTATG
72514884 TGATTGGAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.09, G:0.19, T:0.47
Consensus pattern (16 bp):
AGCTTTGCTAATTATG
Found at i:72515348 original size:24 final size:24
Alignment explanation
Indices: 72515321--72515366 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
72515311 ATGGTATAGG
72515321 GATGATGAATTGGTACATTTTGAT
1 GATGATGAATTGGTACATTTTGAT
*
72515345 GATGATGAATTGGTATATTTTG
1 GATGATGAATTGGTACATTTTG
72515367 TGACATGAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.28, C:0.02, G:0.26, T:0.43
Consensus pattern (24 bp):
GATGATGAATTGGTACATTTTGAT
Found at i:72515377 original size:22 final size:24
Alignment explanation
Indices: 72515325--72515377 Score: 74
Period size: 24 Copynumber: 2.3 Consensus size: 24
72515315 TATAGGGATG
*
72515325 ATGAATTGGTACATTTTGATGATG
1 ATGAATTGGTACATTTTGATGATC
*
72515349 ATGAATTGGTATATTTTG-TGA-C
1 ATGAATTGGTACATTTTGATGATC
72515371 ATGAATT
1 ATGAATT
72515378 AGATGCTAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
22 7 0.26
23 3 0.11
24 17 0.63
ACGTcount: A:0.30, C:0.04, G:0.23, T:0.43
Consensus pattern (24 bp):
ATGAATTGGTACATTTTGATGATC
Found at i:72516957 original size:35 final size:35
Alignment explanation
Indices: 72516911--72516981 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
72516901 TTATTTAAAC
72516911 TTCGAATTTATGGTCCCAAAACCACTGTTTCAATT
1 TTCGAATTTATGGTCCCAAAACCACTGTTTCAATT
72516946 TTCGAATTTATGGTCCCAAAACCACTGTTTCAATT
1 TTCGAATTTATGGTCCCAAAACCACTGTTTCAATT
72516981 T
1 T
72516982 GACTAAAAAC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.28, C:0.23, G:0.11, T:0.38
Consensus pattern (35 bp):
TTCGAATTTATGGTCCCAAAACCACTGTTTCAATT
Found at i:72518492 original size:40 final size:40
Alignment explanation
Indices: 72518437--72518517 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
72518427 TTGTTGATAG
72518437 TTTGTATAGTTCTTTTTGAAGTGTAAGCAACTTAGAAACT
1 TTTGTATAGTTCTTTTTGAAGTGTAAGCAACTTAGAAACT
*
72518477 TTTGTATAGTTCTTTTTGAAGTGTAAGCATCTTAGAAACT
1 TTTGTATAGTTCTTTTTGAAGTGTAAGCAACTTAGAAACT
72518517 T
1 T
72518518 ATGTCCAGCT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.28, C:0.10, G:0.17, T:0.44
Consensus pattern (40 bp):
TTTGTATAGTTCTTTTTGAAGTGTAAGCAACTTAGAAACT
Found at i:72530848 original size:17 final size:17
Alignment explanation
Indices: 72530828--72530868 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
72530818 TAAAAGGAGA
72530828 TTTTGTGTATTTTATGG
1 TTTTGTGTATTTTATGG
*
72530845 TTTTGTGTATTTTGTGG
1 TTTTGTGTATTTTATGG
72530862 TTTTGTG
1 TTTTGTG
72530869 AATTATGGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.07, C:0.00, G:0.27, T:0.66
Consensus pattern (17 bp):
TTTTGTGTATTTTATGG
Found at i:72538257 original size:25 final size:24
Alignment explanation
Indices: 72538223--72538306 Score: 80
Period size: 25 Copynumber: 3.4 Consensus size: 24
72538213 TAGATCATAT
*
72538223 GAGCTAACCGATTTGTAGCTCGTGA
1 GAGCTTACCGATTT-TAGCTCGTGA
*
72538248 GAGCTTACCGATTCTCAGCTCGT-A
1 GAGCTTACCGATT-TTAGCTCGTGA
*
72538272 TGAGCTTATCGATTTATAGCTCGTGA
1 -GAGCTTACCGATTT-TAGCTCGTGA
* *
72538298 AAGCATACC
1 GAGCTTACC
72538307 AATTCATAGC
Statistics
Matches: 48, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
24 2 0.04
25 44 0.92
26 2 0.04
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (24 bp):
GAGCTTACCGATTTTAGCTCGTGA
Found at i:72538295 original size:50 final size:50
Alignment explanation
Indices: 72538211--72538326 Score: 144
Period size: 50 Copynumber: 2.3 Consensus size: 50
72538201 GCGGACACAC
* * * * *
72538211 CATAGATCATATGAGCTAACCGATTTGTAGCTCGTGAGAGCTTACCGATT
1 CATAGCTCATATGAGCTAACCGATTTATAGCTCGTGAAAGCATACCAATT
* * *
72538261 C-TCAGCTCGTATGAGCTTATCGATTTATAGCTCGTGAAAGCATACCAATT
1 CAT-AGCTCATATGAGCTAACCGATTTATAGCTCGTGAAAGCATACCAATT
72538311 CATAGCTCATATGAGC
1 CATAGCTCATATGAGC
72538327 ATACATGTAC
Statistics
Matches: 55, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
49 1 0.02
50 53 0.96
51 1 0.02
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (50 bp):
CATAGCTCATATGAGCTAACCGATTTATAGCTCGTGAAAGCATACCAATT
Found at i:72538690 original size:22 final size:24
Alignment explanation
Indices: 72538665--72538742 Score: 79
Period size: 26 Copynumber: 3.2 Consensus size: 24
72538655 TACAAATTGA
72538665 TAAAAATT-A-ATAATGGGTTAGG
1 TAAAAATTCAGATAATGGGTTAGG
*
72538687 TAAATATTCCATGATAATGGGTTAGG
1 TAAAAATT-CA-GATAATGGGTTAGG
**
72538713 TAAATGTTCCATGATAATGGGTTAGG
1 TAAAAATT-CA-GATAATGGGTTAGG
72538739 TAAA
1 TAAA
72538743 TGTTCCATGA
Statistics
Matches: 50, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
22 7 0.14
24 1 0.02
26 42 0.84
ACGTcount: A:0.38, C:0.05, G:0.23, T:0.33
Consensus pattern (24 bp):
TAAAAATTCAGATAATGGGTTAGG
Found at i:72538703 original size:26 final size:26
Alignment explanation
Indices: 72538674--72538753 Score: 151
Period size: 26 Copynumber: 3.1 Consensus size: 26
72538664 ATAAAAATTA
*
72538674 ATAATGGGTTAGGTAAATATTCCATG
1 ATAATGGGTTAGGTAAATGTTCCATG
72538700 ATAATGGGTTAGGTAAATGTTCCATG
1 ATAATGGGTTAGGTAAATGTTCCATG
72538726 ATAATGGGTTAGGTAAATGTTCCATG
1 ATAATGGGTTAGGTAAATGTTCCATG
72538752 AT
1 AT
72538754 GGGCATTTCA
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.33, C:0.07, G:0.25, T:0.35
Consensus pattern (26 bp):
ATAATGGGTTAGGTAAATGTTCCATG
Found at i:72540358 original size:27 final size:27
Alignment explanation
Indices: 72540318--72540537 Score: 275
Period size: 27 Copynumber: 8.1 Consensus size: 27
72540308 AGGAAGCGTC
* * *
72540318 CTGGTGGCTATGCCACAAATATCTGAT
1 CTGGTGGCTCTGCCACGATTATCTGAT
72540345 CTGGTGGCTCTGCCACGATTATCTGAT
1 CTGGTGGCTCTGCCACGATTATCTGAT
*
72540372 CTGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACGAT-TATCTGAT
*
72540399 CTAGTGGCTCTGCCACGATTATCTGAT
1 CTGGTGGCTCTGCCACGATTATCTGAT
*
72540426 CTGGTGGCTCTGCCACGATTATCTGAC
1 CTGGTGGCTCTGCCACGATTATCTGAT
* *
72540453 CTGGTGGTTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACGAT-TATCTGAT
* *
72540480 CTGGTGGTTCTTCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACGATTATCTG-AT
* * *
72540508 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACGATTATCTGAT
72540534 CTGG
1 CTGG
72540538 CAGCCATGCC
Statistics
Matches: 170, Mismatches: 18, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
26 9 0.05
27 144 0.85
28 17 0.10
ACGTcount: A:0.16, C:0.25, G:0.23, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACGATTATCTGAT
Found at i:72540457 original size:81 final size:81
Alignment explanation
Indices: 72540321--72540531 Score: 316
Period size: 81 Copynumber: 2.6 Consensus size: 81
72540311 AAGCGTCCTG
* * * *
72540321 GTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACGATTATCTGATCTGGTGGCTCTGCC
1 GTGGCTCTGCCACGATTATCTGATCTGGTGGCTCTGCCACGATTATCTGACCTGGTGGCTCTGCC
72540386 ACATATATCTGTTCTA
66 ACATATATCTGTTCTA
*
72540402 GTGGCTCTGCCACGATTATCTGATCTGGTGGCTCTGCCACGATTATCTGACCTGGTGGTTCTGCC
1 GTGGCTCTGCCACGATTATCTGATCTGGTGGCTCTGCCACGATTATCTGACCTGGTGGCTCTGCC
*
72540467 ACATATATCTGTTCTG
66 ACATATATCTGTTCTA
* * * *
72540483 GTGGTTCTTCCACGATTATCTGTATCTGGTGACTCTGTCAC-ATTATCTG
1 GTGGCTCTGCCACGATTATCTG-ATCTGGTGGCTCTGCCACGATTATCTG
72540532 TTCTGGCAGC
Statistics
Matches: 119, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
81 103 0.87
82 16 0.13
ACGTcount: A:0.17, C:0.25, G:0.23, T:0.36
Consensus pattern (81 bp):
GTGGCTCTGCCACGATTATCTGATCTGGTGGCTCTGCCACGATTATCTGACCTGGTGGCTCTGCC
ACATATATCTGTTCTA
Found at i:72540548 original size:81 final size:80
Alignment explanation
Indices: 72540321--72540559 Score: 309
Period size: 81 Copynumber: 3.0 Consensus size: 80
72540311 AAGCGTCCTG
* * *
72540321 GTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACGATTATCTGATCTGGTGGCTCTGCC
1 GTGGCTCTGCCACGATTATCTGATCTGGTGGCTCTGCCACGATTATCTGATCTGGTGGC-CTGCC
72540386 ACATATATCTGTTCTA
65 ACATATATCTGTTCTA
* *
72540402 GTGGCTCTGCCACGATTATCTGATCTGGTGGCTCTGCCACGATTATCTGACCTGGTGGTTCTGCC
1 GTGGCTCTGCCACGATTATCTGATCTGGTGGCTCTGCCACGATTATCTGATCTGGTGG-CCTGCC
*
72540467 ACATATATCTGTTCTG
65 ACATATATCTGTTCTA
* * * * * **
72540483 GTGGTTCTTCCACGATTATCTGTATCTGGTGACTCTGTCAC-ATTATCTGTTCTGGCAGCCATGC
1 GTGGCTCTGCCACGATTATCTG-ATCTGGTGGCTCTGCCACGATTATCTGATCTGGTGGCC-TGC
*
72540547 CACATATTTCTGT
64 CACATATATCTGT
72540560 GGTGTGTAGC
Statistics
Matches: 139, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
80 1 0.01
81 122 0.88
82 16 0.12
ACGTcount: A:0.17, C:0.25, G:0.22, T:0.36
Consensus pattern (80 bp):
GTGGCTCTGCCACGATTATCTGATCTGGTGGCTCTGCCACGATTATCTGATCTGGTGGCCTGCCA
CATATATCTGTTCTA
Found at i:72549398 original size:19 final size:19
Alignment explanation
Indices: 72549374--72549413 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
72549364 TCAGTAGTTC
72549374 ATCCATATAAACAGTATTT
1 ATCCATATAAACAGTATTT
*
72549393 ATCCATATAAATAGTATTT
1 ATCCATATAAACAGTATTT
72549412 AT
1 AT
72549414 GCCCATTGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.42, C:0.12, G:0.05, T:0.40
Consensus pattern (19 bp):
ATCCATATAAACAGTATTT
Found at i:72549541 original size:25 final size:25
Alignment explanation
Indices: 72549518--72549602 Score: 72
Period size: 23 Copynumber: 3.5 Consensus size: 25
72549508 TTCAAGCTAT
*
72549518 GAACAGTAAGCTCCTCTTGAGCTAAA
1 GAACAGTAAGCT-CTATTGAGCTAAA
* *
72549544 GGACAGTAAGCTCTATTGAGCTGAA
1 GAACAGTAAGCTCTATTGAGCTAAA
* *
72549569 G--CGGTAAGCTCTGA-CGAGCT-AA
1 GAACAGTAAGCTCT-ATTGAGCTAAA
72549591 -AACAGTAAGCTC
1 GAACAGTAAGCTC
72549603 CAATTAGCTG
Statistics
Matches: 50, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
22 2 0.04
23 24 0.48
24 1 0.02
25 12 0.24
26 11 0.22
ACGTcount: A:0.33, C:0.21, G:0.25, T:0.21
Consensus pattern (25 bp):
GAACAGTAAGCTCTATTGAGCTAAA
Found at i:72558826 original size:26 final size:25
Alignment explanation
Indices: 72558797--72558854 Score: 66
Period size: 25 Copynumber: 2.3 Consensus size: 25
72558787 ATAAAACCTA
*
72558797 AAAATGAAATAGTA-TTAAATGAAAAT
1 AAAAT-AAAAAGTACTTAAA-GAAAAT
*
72558823 AAAATAAAAAGTACTTAAAGAAGAT
1 AAAATAAAAAGTACTTAAAGAAAAT
72558848 -AAATAAA
1 AAAATAAA
72558855 GATAAAAGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
24 7 0.24
25 12 0.41
26 10 0.34
ACGTcount: A:0.66, C:0.02, G:0.10, T:0.22
Consensus pattern (25 bp):
AAAATAAAAAGTACTTAAAGAAAAT
Found at i:72558849 original size:25 final size:25
Alignment explanation
Indices: 72558797--72558880 Score: 70
Period size: 26 Copynumber: 3.4 Consensus size: 25
72558787 ATAAAACCTA
*
72558797 AAAATGAAATAGTATTAAATGAAAAT
1 AAAAT-AAAAAGTATTAAATGAAAAT
*
72558823 AAAATAAAAAGTACTTAAA-GAAGAT
1 AAAATAAAAAGTA-TTAAATGAAAAT
*
72558848 -AAAT--AAAG-ATAAAAGTGAAAAT
1 AAAATAAAAAGTATTAAA-TGAAAAT
72558870 AAAAATAAAAA
1 -AAAATAAAAA
72558881 ATAAAAAGTC
Statistics
Matches: 47, Mismatches: 4, Indels: 14
0.72 0.06 0.22
Matches are distributed among these distances:
20 4 0.09
21 1 0.02
22 9 0.19
24 8 0.17
25 12 0.26
26 13 0.28
ACGTcount: A:0.68, C:0.01, G:0.11, T:0.20
Consensus pattern (25 bp):
AAAATAAAAAGTATTAAATGAAAAT
Found at i:72560454 original size:27 final size:27
Alignment explanation
Indices: 72560423--72560475 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
72560413 ATTATTATGA
72560423 GAGTAAGCAT-AAAAAGAGAGTAAAATG
1 GAGTAAGCATAAAAAAG-GAGTAAAATG
72560450 GAGTAAGCATAAAAAAGGAGTAAAAT
1 GAGTAAGCATAAAAAAGGAGTAAAAT
72560476 AGAAGAGAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
27 19 0.76
28 6 0.24
ACGTcount: A:0.57, C:0.04, G:0.25, T:0.15
Consensus pattern (27 bp):
GAGTAAGCATAAAAAAGGAGTAAAATG
Found at i:72562734 original size:39 final size:39
Alignment explanation
Indices: 72562678--72562819 Score: 187
Period size: 39 Copynumber: 3.6 Consensus size: 39
72562668 CAGTGATGTT
*
72562678 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
*
72562717 TATCCGGACTTAAGGTCCGCAGGCAATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* * * *
72562756 TAACCGGACTTAAGGTCCGCAGGTTACGTGCTGGAAATA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* * *
72562795 TGTCCGGGC-TAAAGTCCCGCAGGCT
1 TATCCGGACTTAAGGT-CCGCAGGCT
72562820 TCGAACTGGT
Statistics
Matches: 90, Mismatches: 12, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
38 5 0.06
39 85 0.94
ACGTcount: A:0.23, C:0.23, G:0.30, T:0.25
Consensus pattern (39 bp):
TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
Found at i:72562834 original size:78 final size:77
Alignment explanation
Indices: 72562677--72562839 Score: 179
Period size: 78 Copynumber: 2.1 Consensus size: 77
72562667 TCAGTGATGT
* * * *
72562677 TTAT-CCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTTAAGGTCCGCAGGC
1 TTATACCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGTCCGCAGGC
**
72562741 AATGTGCTGGAA
66 AATGAACTGGAA
* * *
72562753 TTATAACCGGACTTAAGGTCCGCAGGTTACGTGCTGGAAATATGTCCGGGC-TAAAGTCCCGCAG
1 TTAT-ACCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGT-CCGCAG
* *
72562817 GC-TTCGAACTGGTA
64 GCAAT-GAACTGGAA
72562831 TTATACCGG
1 TTATACCGG
72562840 GTTTAAATTT
Statistics
Matches: 72, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
76 4 0.06
77 11 0.15
78 57 0.79
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (77 bp):
TTATACCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGTCCGCAGGC
AATGAACTGGAA
Found at i:72570079 original size:20 final size:19
Alignment explanation
Indices: 72570054--72570100 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 19
72570044 ATCTATTTGC
72570054 AAACAGTAGCTCATCCATAT
1 AAACAGTA-CTCATCCATAT
* *
72570074 AAACAGTATTTATCCATAT
1 AAACAGTACTCATCCATAT
72570093 AAACAGTA
1 AAACAGTA
72570101 TTTATGCCCG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 17 0.68
20 8 0.32
ACGTcount: A:0.45, C:0.19, G:0.09, T:0.28
Consensus pattern (19 bp):
AAACAGTACTCATCCATAT
Found at i:72570090 original size:19 final size:19
Alignment explanation
Indices: 72570066--72570105 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
72570056 ACAGTAGCTC
72570066 ATCCATATAAACAGTATTT
1 ATCCATATAAACAGTATTT
72570085 ATCCATATAAACAGTATTT
1 ATCCATATAAACAGTATTT
72570104 AT
1 AT
72570106 GCCCGTTGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.42, C:0.15, G:0.05, T:0.38
Consensus pattern (19 bp):
ATCCATATAAACAGTATTT
Done.