Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 212 of 295
Found at i:72936403 original size:24 final size:20
Alignment explanation
Indices: 72936352--72936404 Score: 52
Period size: 24 Copynumber: 2.4 Consensus size: 20
72936342 ATTATTATTG
*
72936352 TTATTATTATTGTTTATTTA
1 TTATTATTATTGTTTATTCA
72936372 TTATTTATTATTGTCATTTATTCA
1 TTA-TTATTATTG---TTTATTCA
72936396 TTTATTATT
1 -TTATTATT
72936405 GCCGTTGTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
20 3 0.11
21 9 0.33
24 12 0.44
25 3 0.11
ACGTcount: A:0.25, C:0.04, G:0.04, T:0.68
Consensus pattern (20 bp):
TTATTATTATTGTTTATTCA
Found at i:72943575 original size:43 final size:44
Alignment explanation
Indices: 72943455--72943576 Score: 155
Period size: 43 Copynumber: 2.8 Consensus size: 44
72943445 AGCTCATACA
*
72943455 ATGCCAAC-GTCCCAGACGTGGTCTTACATGT-AATCAAATATCG
1 ATGCC-ACTGTCCCAGACATGGTCTTACATGTAAATCAAATATCG
*
72943498 ATGCCACTGTCCCAGACAGGGTCTTACATG-AAATCAAATA-CG
1 ATGCCACTGTCCCAGACATGGTCTTACATGTAAATCAAATATCG
* *
72943540 ATGTCGA-TGTCCCAGACATGGTCTTACACGTAAATCA
1 ATG-CCACTGTCCCAGACATGGTCTTACATGTAAATCA
72943577 TAAGTCAATG
Statistics
Matches: 70, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
42 28 0.40
43 42 0.60
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (44 bp):
ATGCCACTGTCCCAGACATGGTCTTACATGTAAATCAAATATCG
Found at i:72943999 original size:8 final size:8
Alignment explanation
Indices: 72943986--72944010 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
72943976 AAATTAACCC
72943986 TCACATTT
1 TCACATTT
72943994 TCACATTT
1 TCACATTT
72944002 TCACATTT
1 TCACATTT
72944010 T
1 T
72944011 AGTCCCTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.52
Consensus pattern (8 bp):
TCACATTT
Found at i:72953298 original size:12 final size:13
Alignment explanation
Indices: 72953276--72953311 Score: 56
Period size: 12 Copynumber: 2.8 Consensus size: 13
72953266 CTATTATTAA
72953276 TATTATTATTG-T
1 TATTATTATTGTT
72953288 TATTATTATTGTT
1 TATTATTATTGTT
72953301 TATTTATTATT
1 TA-TTATTATT
72953312 TAATTAGTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 11 0.50
13 3 0.14
14 8 0.36
ACGTcount: A:0.25, C:0.00, G:0.06, T:0.69
Consensus pattern (13 bp):
TATTATTATTGTT
Found at i:72967408 original size:53 final size:53
Alignment explanation
Indices: 72967224--72967432 Score: 224
Period size: 55 Copynumber: 3.9 Consensus size: 53
72967214 CATTAGGGTT
* ** *
72967224 CAAGGATACCATGTAAGACCATGCTAAGGTATGGAAATTGGTAAGGTTTC-TAAGG
1 CAAGGATACCATGTAAGACCATGCCAAGACATGG-CATTGGTAA-G-TTCATAAGG
* * * *
72967279 CAAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGG
1 CAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-C-ATAAGG
* * *
72967334 CAAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGG
1 C-AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGG
* * *
72967387 CAAGGCTACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 CAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT
72967433 TCAAAAGGAT
Statistics
Matches: 129, Mismatches: 20, Indels: 12
0.80 0.12 0.07
Matches are distributed among these distances:
52 6 0.05
53 44 0.34
54 8 0.06
55 67 0.52
56 4 0.03
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (53 bp):
CAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGG
Found at i:72967431 original size:108 final size:110
Alignment explanation
Indices: 72967232--72967432 Score: 291
Period size: 108 Copynumber: 1.8 Consensus size: 110
72967222 TTCAAGGATA
* * *
72967232 CCATGTAAGACCATGCTAAGGTATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
*
72967297 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* * **
72967342 CCATGTAAGACCATGCCAAGGCATGG-CATTGGTGA-G-TTCATAAGGCAAGGCTACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
72967404 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
72967433 TCAAAAGGAT
Statistics
Matches: 81, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.58
109 7 0.09
110 24 0.30
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:72974876 original size:55 final size:52
Alignment explanation
Indices: 72974787--72974983 Score: 191
Period size: 55 Copynumber: 3.7 Consensus size: 52
72974777 CATTAGGGTT
**
72974787 CAAGGATACCATGTAAGACCATG-CTAAGGTATGGCAATTGGTAAGGCTTCTATGG
1 CAAGGATACCATGTAAGACCATGTC-AAGACATGGC-ATTGGTAA-G-TTCTATGG
* * *
72974842 CAAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGG
1 CAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTT-CTAT--GG
* * * * *
72974897 CGAAGG-TTCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGG
1 C-AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTC-TATGG
* *
72974950 CAAGGCTACCATGTAAGACAATGTCAAGACATGG
1 CAAGGATACCATGTAAGACCATGTCAAGACATGG
72974984 AAATTGTAAC
Statistics
Matches: 118, Mismatches: 17, Indels: 16
0.78 0.11 0.11
Matches are distributed among these distances:
52 6 0.05
53 32 0.27
54 8 0.07
55 67 0.57
56 5 0.04
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.23
Consensus pattern (52 bp):
CAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCTATGG
Found at i:72976389 original size:37 final size:37
Alignment explanation
Indices: 72976339--72976417 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
72976329 TTATTACGAA
* * *
72976339 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
72976376 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
72976413 GTCTT
1 GTCTT
72976418 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:72976662 original size:47 final size:47
Alignment explanation
Indices: 72976536--72976824 Score: 454
Period size: 47 Copynumber: 6.1 Consensus size: 47
72976526 CCCTTCGGGA
* * * * * *
72976536 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
72976583 CCTGTCACATATATATACACTTCCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72976632 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72976679 C-TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72976727 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72976774 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72976821 CTTA
1 CTTA
72976825 CTATCATTTC
Statistics
Matches: 225, Mismatches: 12, Indels: 10
0.91 0.05 0.04
Matches are distributed among these distances:
46 6 0.03
47 135 0.60
48 40 0.18
49 44 0.20
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.31
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:72976718 original size:95 final size:95
Alignment explanation
Indices: 72976536--72976824 Score: 474
Period size: 95 Copynumber: 3.0 Consensus size: 95
72976526 CCCTTCGGGA
* * * * * * *
72976536 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG-CCTATCACATATATATAC
*
72976601 ACTTCCACATTCATCACATCGGCCATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
72976632 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATATACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATATACA
72976697 CTTTCACATTCATCACATCGGCCATTAGGC
66 CTTTCACATTCATCACATCGGCCATTAGGC
72976727 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC-TATCACATATATATAC
72976790 ACTTTCACATTCATCACATCGGCCATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
72976821 CTTA
1 CTTA
72976825 CTATCATTTC
Statistics
Matches: 184, Mismatches: 8, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
94 43 0.23
95 95 0.52
96 46 0.25
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.31
Consensus pattern (95 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATATACA
CTTTCACATTCATCACATCGGCCATTAGGC
Found at i:72976794 original size:142 final size:141
Alignment explanation
Indices: 72976538--72976822 Score: 464
Period size: 142 Copynumber: 2.0 Consensus size: 141
72976528 CTTCGGGACT
* * * *
72976538 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATATACAC
1 TATCACATTTATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACA-ATATATACAC
72976603 TTCCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
65 TTCCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
72976668 GGCCATTAGGCC
130 GGCCATTAGGCC
* * *
72976680 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATATACA
1 TATCACAT-T-TATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACAATATATACA
*
72976744 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
64 CTTCCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
72976809 CGGCCATTAGGCC
129 CGGCCATTAGGCC
72976822 T
1 T
72976823 TACTATCATT
Statistics
Matches: 133, Mismatches: 8, Indels: 4
0.92 0.06 0.03
Matches are distributed among these distances:
142 95 0.71
143 1 0.01
144 37 0.28
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.31
Consensus pattern (141 bp):
TATCACATTTATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACAATATATACACT
TCCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
GCCATTAGGCC
Found at i:72980665 original size:40 final size:40
Alignment explanation
Indices: 72980608--72980723 Score: 178
Period size: 40 Copynumber: 2.9 Consensus size: 40
72980598 CGAATACACG
* * * *
72980608 TCACTAGCATGATTGCTCTTCGGGATTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
72980648 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
72980688 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGA
72980724 CATCATTCGA
Statistics
Matches: 68, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 68 1.00
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:72981068 original size:29 final size:29
Alignment explanation
Indices: 72981029--72981107 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
72981019 CTTAATAATC
*
72981029 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
72981059 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
72981088 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
72981108 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:72981150 original size:43 final size:43
Alignment explanation
Indices: 72981089--72981191 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
72981079 TGCATTTCAA
72981089 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
72981132 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
72981175 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
72981192 TGAAAACCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:72983103 original size:37 final size:37
Alignment explanation
Indices: 72983053--72983131 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
72983043 TTATTACGAA
* * *
72983053 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
72983090 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
72983127 GTCTT
1 GTCTT
72983132 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:72983328 original size:47 final size:47
Alignment explanation
Indices: 72983250--72983538 Score: 454
Period size: 47 Copynumber: 6.1 Consensus size: 47
72983240 CCCTTCGGGA
* * * * * *
72983250 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
72983297 CCTGTCACATATATACACTTCCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72983344 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72983391 C-TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72983439 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72983486 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72983535 CTTA
1 CTTA
72983539 CTATCATTTC
Statistics
Matches: 225, Mismatches: 12, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
46 6 0.03
47 130 0.58
48 40 0.18
49 49 0.22
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.31
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:72983436 original size:95 final size:95
Alignment explanation
Indices: 72983250--72983538 Score: 474
Period size: 95 Copynumber: 3.0 Consensus size: 95
72983240 CCCTTCGGGA
* * * * * * *
72983250 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG-CCTATCACATATATATAC
*
72983313 ACTTCCACATTCATCACATCGGCCATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
72983344 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATATACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATATACA
72983409 CTTTCACATTCATCACATCGGCCATTAGGC
66 CTTTCACATTCATCACATCGGCCATTAGGC
72983439 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC-TATCACATATATATAC
72983504 ACTTTCACATTCATCACATCGGCCATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
72983535 CTTA
1 CTTA
72983539 CTATCATTTC
Statistics
Matches: 184, Mismatches: 8, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
93 7 0.04
94 40 0.22
95 86 0.47
96 51 0.28
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.31
Consensus pattern (95 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATATACA
CTTTCACATTCATCACATCGGCCATTAGGC
Found at i:72986476 original size:16 final size:16
Alignment explanation
Indices: 72986455--72986485 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
72986445 ATAAAATTGA
72986455 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
72986471 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
72986486 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:72991991 original size:25 final size:25
Alignment explanation
Indices: 72991943--72991991 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
72991933 CATAATTGAA
* * *
72991943 ATGAAATGGATTGATTTTGTATATT
1 ATGAAATAGATTGATTGTGAATATT
*
72991968 ATGAAATATATTGATTGTGAATAT
1 ATGAAATAGATTGATTGTGAATAT
72991992 ATGTGTATCG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.37, C:0.00, G:0.18, T:0.45
Consensus pattern (25 bp):
ATGAAATAGATTGATTGTGAATATT
Found at i:72992448 original size:43 final size:43
Alignment explanation
Indices: 72992387--72992472 Score: 129
Period size: 43 Copynumber: 2.0 Consensus size: 43
72992377 CATGTGATTG
72992387 ATATTGAAATGACAAATATGAGAAATGAATATGAGATGAGAAA
1 ATATTGAAATGACAAATATGAGAAATGAATATGAGATGAGAAA
* **
72992430 ATATTGAAATGGA-AAATATGAGAATTGGTTATGAGATGAGAAA
1 ATATTGAAAT-GACAAATATGAGAAATGAATATGAGATGAGAAA
72992473 TGAGATATGA
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
43 37 0.95
44 2 0.05
ACGTcount: A:0.50, C:0.01, G:0.23, T:0.26
Consensus pattern (43 bp):
ATATTGAAATGACAAATATGAGAAATGAATATGAGATGAGAAA
Found at i:72993895 original size:12 final size:12
Alignment explanation
Indices: 72993878--72993903 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
72993868 TATTTGTTTC
72993878 TTGTTTTAATAT
1 TTGTTTTAATAT
72993890 TTGTTTTAATAT
1 TTGTTTTAATAT
72993902 TT
1 TT
72993904 TTAATTGTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.08, T:0.69
Consensus pattern (12 bp):
TTGTTTTAATAT
Found at i:72999789 original size:9 final size:9
Alignment explanation
Indices: 72999739--72999800 Score: 51
Period size: 8 Copynumber: 7.0 Consensus size: 9
72999729 TAGTTTCAAA
72999739 TAATATTTT
1 TAATATTTT
72999748 TAATACTTTT
1 TAATA-TTTT
*
72999758 ATAA-ATTTA
1 -TAATATTTT
72999767 TAA-ATTTT
1 TAATATTTT
*
72999775 T-TTATTTT
1 TAATATTTT
72999783 TAATA-TTT
1 TAATATTTT
72999791 TATATATTTT
1 TA-ATATTTT
72999801 AAAATAAAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
8 19 0.44
9 13 0.30
10 8 0.19
11 3 0.07
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.65
Consensus pattern (9 bp):
TAATATTTT
Found at i:73005238 original size:27 final size:27
Alignment explanation
Indices: 73005177--73005257 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
73005167 TGTATCATTG
* *
73005177 TATTAAATTATTTAAATATTATTGAT-TA
1 TATTTAATTATTAAAATATT-TT-ATATA
73005205 TATTTAATTATTAAAATATTTTATATA
1 TATTTAATTATTAAAATATTTTATATA
* *
73005232 TCA-TTAATT-TTACATATAATTTATAT
1 T-ATTTAATTATTA-AAATATTTTATAT
73005258 TAGTTACTTA
Statistics
Matches: 46, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
26 5 0.11
27 22 0.48
28 19 0.41
ACGTcount: A:0.42, C:0.02, G:0.01, T:0.54
Consensus pattern (27 bp):
TATTTAATTATTAAAATATTTTATATA
Found at i:73005463 original size:13 final size:13
Alignment explanation
Indices: 73005447--73005476 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
73005437 TTCATTTCAC
73005447 TTTCTACCATACT
1 TTTCTACCATACT
73005460 TTTCTACCATACT
1 TTTCTACCATACT
73005473 TTTC
1 TTTC
73005477 AAAAGCCTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.20, C:0.30, G:0.00, T:0.50
Consensus pattern (13 bp):
TTTCTACCATACT
Found at i:73006963 original size:139 final size:138
Alignment explanation
Indices: 73006478--73007030 Score: 828
Period size: 137 Copynumber: 4.0 Consensus size: 138
73006468 TAGAAAAATG
* * * * *
73006478 AATTATATTCTTTTTAAAAGAATATTAATATCCATATTTTTTATATTTTGACTGAAATTAATTAA
1 AATTATATTCTTTCTAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAA
* * ** *
73006543 TATAAATGTTTATATTAATAAATTTTGTAAAATATATATAATTAATATTTTGTATGAATCAAATT
66 TATAACTATTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
73006608 CATATATT
131 CATATATT
* * * *
73006616 AATTATATTATTTCTAAAAGAATATTAATTTTCAT-TTTTTTATATTTTGACTGAAATTAATTAA
1 AATTATATTCTTTCTAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAA
* *
73006680 TATAACTGTTTATATTAATAAATTCGGT--AATATATATAATTAATATTTTGTATGAATCAAATT
66 TATAACTATTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
73006743 CATATATT
131 CATATATT
* *
73006751 AATTATATTCTTTCCAAAA-AA-ATTAATTTCCATGTCTTTTATATTTTGACCAAAATTAATTAA
1 AATTATATTCTTTCTAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAA
* * * * *
73006814 TAGAATTATTTATATTAATGAATTCGATAAAATGTATACAATTAAATATTTTGTATGAATCAAAT
66 TATAACTATTTATATTAATAAATTCGGTAAAATATATACAATT-AATATTTTGTATGAATCAAAT
73006879 TCATATATT
130 TCATATATT
* *
73006888 AATTATATTCTTTCTAAAAGAATATTAATTTCCTTGTCTTTTATATTTTGGCCGAAATTAATTAA
1 AATTATATTCTTTCTAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAA
*
73006953 TATAACTATTTATATTAATAAAATCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
66 TATAACTATTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
73007018 CATATATT
131 CATATATT
73007026 AATTA
1 AATTA
73007031 AAATTCATAT
Statistics
Matches: 379, Mismatches: 30, Indels: 12
0.90 0.07 0.03
Matches are distributed among these distances:
133 11 0.03
134 51 0.13
135 60 0.16
136 11 0.03
137 102 0.27
138 68 0.18
139 76 0.20
ACGTcount: A:0.41, C:0.07, G:0.06, T:0.46
Consensus pattern (138 bp):
AATTATATTCTTTCTAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAA
TATAACTATTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
CATATATT
Found at i:73007036 original size:18 final size:18
Alignment explanation
Indices: 73007013--73007048 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
73007003 TGTATGAATC
73007013 AAATTCATATATTAATTA
1 AAATTCATATATTAATTA
73007031 AAATTCATATATTAATTA
1 AAATTCATATATTAATTA
73007049 TATTCTTTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (18 bp):
AAATTCATATATTAATTA
Found at i:73007161 original size:156 final size:156
Alignment explanation
Indices: 73006875--73007185 Score: 525
Period size: 156 Copynumber: 2.0 Consensus size: 156
73006865 TGTATGAATC
* * *
73006875 AAATTCATATATTAATTATATTCTTTCTAAAAGAATATTAATTTCCTTGTCTTTTATATTTTGGC
1 AAATTCATATATTAATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGAC
** *
73006940 CGAAATTAATTAATATAACTATTTATATTAATAAAATCGGTAAAATATATACAATTAATATTTTG
66 CGAAATTAATTAATATAACTATTTATATTAATAAAATAAGTAAAATATATACAATTAATAATTTG
73007005 TATGAATCAAATTCATATATTAATTA
131 TATGAATCAAATTCATATATTAATTA
*
73007031 AAATTCATATATTAATTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGAC
1 AAATTCATATATTAATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGAC
* *
73007096 TGAAATTAATTAAT-TAAACTATTTATATTAATAAATTAAGTAAAATATATACAATTAATAATTT
66 CGAAATTAATTAATAT-AACTATTTATATTAATAAAATAAGTAAAATATATACAATTAATAATTT
73007160 GTATGAATCAAATTCATATATTAATT
130 GTATGAATCAAATTCATATATTAATT
73007186 GTATCTATGT
Statistics
Matches: 145, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
155 1 0.01
156 144 0.99
ACGTcount: A:0.42, C:0.08, G:0.05, T:0.45
Consensus pattern (156 bp):
AAATTCATATATTAATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGAC
CGAAATTAATTAATATAACTATTTATATTAATAAAATAAGTAAAATATATACAATTAATAATTTG
TATGAATCAAATTCATATATTAATTA
Found at i:73007271 original size:17 final size:17
Alignment explanation
Indices: 73007251--73007283 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
73007241 TTTAACTATC
73007251 AAATTAAATTAATTCAA
1 AAATTAAATTAATTCAA
*
73007268 AAATTAATTTAATTCA
1 AAATTAAATTAATTCA
73007284 TATGACAGCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (17 bp):
AAATTAAATTAATTCAA
Found at i:73009455 original size:27 final size:28
Alignment explanation
Indices: 73009392--73009541 Score: 214
Period size: 28 Copynumber: 5.4 Consensus size: 28
73009382 GAGATTGGCG
* * * *
73009392 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
73009421 CTAAGTGTGCGAG-TTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
73009448 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
73009476 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
73009504 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
73009531 CTGAGTGTGCG
1 CTAAGTGTGCG
73009542 GACTTAATAT
Statistics
Matches: 113, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
27 45 0.40
28 56 0.50
29 12 0.11
ACGTcount: A:0.26, C:0.12, G:0.29, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:73017477 original size:28 final size:28
Alignment explanation
Indices: 73017412--73017562 Score: 223
Period size: 28 Copynumber: 5.4 Consensus size: 28
73017402 GAGATTGGCG
* * * *
73017412 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
73017441 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
73017469 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
73017497 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
73017525 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
73017552 CTGAGTGTGCG
1 CTAAGTGTGCG
73017563 GACTTAATAT
Statistics
Matches: 115, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
27 24 0.21
28 76 0.66
29 15 0.13
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:73027637 original size:48 final size:47
Alignment explanation
Indices: 73027513--73027638 Score: 162
Period size: 48 Copynumber: 2.6 Consensus size: 47
73027503 GAGATCCCAC
* * * * *
73027513 GTAAGACCCTATCTGGGATATGGCATCGACGTTGATATGTGTGCCATT
1 GTAAGACCATATCT-GGATATGGCATCGGCGTTAATATATGTGCCAGT
* *
73027561 GTAAGACCATGTCTAGGACATGGCATCGGCGTTAATATATGTGCCAGT
1 GTAAGACCATATCT-GGATATGGCATCGGCGTTAATATATGTGCCAGT
73027609 GTAAGACCATATCTGGAATATGGCATCGGC
1 GTAAGACCATATCTGG-ATATGGCATCGGC
73027639 ATCGGTATGT
Statistics
Matches: 67, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
47 2 0.03
48 65 0.97
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (47 bp):
GTAAGACCATATCTGGATATGGCATCGGCGTTAATATATGTGCCAGT
Found at i:73027728 original size:42 final size:42
Alignment explanation
Indices: 73027644--73027762 Score: 130
Period size: 42 Copynumber: 2.8 Consensus size: 42
73027634 TCGGCATCGG
* * * * * * *
73027644 TATGTGATTTCATGTAAGACCATATTTGGGATATGGCGTTGA
1 TATGAGATTTCGTGTAAGACCATGTCTGGGACATGACATTGA
*
73027686 TATGAGATTTCGTGTAAGACCATGTCTAGGACATGACATTGA
1 TATGAGATTTCGTGTAAGACCATGTCTGGGACATGACATTGA
* ** *
73027728 TATGAGGTCCCGTATAAGACCATGTCTGGGACATG
1 TATGAGATTTCGTGTAAGACCATGTCTGGGACATG
73027763 GCATCGACAC
Statistics
Matches: 64, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
42 64 1.00
ACGTcount: A:0.28, C:0.14, G:0.26, T:0.32
Consensus pattern (42 bp):
TATGAGATTTCGTGTAAGACCATGTCTGGGACATGACATTGA
Found at i:73031284 original size:258 final size:256
Alignment explanation
Indices: 73030747--73031526 Score: 1285
Period size: 258 Copynumber: 3.0 Consensus size: 256
73030737 CGTGTCCTGC
*
73030747 TGTAATTACGGGTACATTTTCTATTTATGAAACTTCTATTGTTGCTTTGATTGATCCGGGGTCTA
1 TGTAATTAC-GGTACATTTTCTATCTATGAAACTTCTATTGTTGCTTTGATTGATCCGGGGTCTA
* *
73030812 CCCATTCGTATATTTGCATAAAGTTGGTGTCTGATATGAACTTGTTTGTTGAATCTACTGAGTTC
65 CCCATTCATATATTTGCATGAAGTTGGTGTCTGATATGAACTTGTTTGTTGAATCTACTGAGTTC
73030877 GT-ATAAAGGTGTCAAACCCGTTAGGCAAGTATGTGTTAGTTGATAAAGTGTGTAAAAATTGCCC
130 GTAATAAAGGTGTCAAACCCGTTAGGCAAGTATGTGTTAGTTGATAAAGTGTGTAAAAATTGCCC
* *
73030941 TTTAATGATTAGAGGTCAATATTTTCCAGCTAATCTCATGCTATTACCGTTTGACGAATTTGA
195 TTTAATGATTAGAGGTCATTATTTTCGA-CTAATCTCATGCTATTACCGTTTGACGAATTTGA
*
73031004 TGTAATTACGAGTACATTTTCTATCTATGAAACTTCTATTATTGCTTTGATTGATCCGGGGTCTA
1 TGTAATTACG-GTACATTTTCTATCTATGAAACTTCTATTGTTGCTTTGATTGATCCGGGGTCTA
73031069 CCCATTCATATATTTGCATGAAGTTGGTGTCTGATATGAACTTGTTTGTTGAATCTACTGAGTTC
65 CCCATTCATATATTTGCATGAAGTTGGTGTCTGATATGAACTTGTTTGTTGAATCTACTGAGTTC
*
73031134 GTAATAAAGGTGTCAAACCCATTAGGCAAGTATGTGTTAGTTGATAAAGTGTGTAAAAAATT-CC
130 GTAATAAAGGTGTCAAACCCGTTAGGCAAGTATGTGTTAGTTGATAAAGTGTGT-AAAAATTGCC
* * * * * *
73031198 ATTTTATGAGTAGATGTCATTATTTTCTGACTAATCTCATGATATTATCGTTTGACGAATTTGA
194 CTTTAATGATTAGAGGTCATTATTTTC-GACTAATCTCATGCTATTACCGTTTGACGAATTTGA
*
73031262 TGTAATTACAGGTACATTTTCTATCTATGAAACTTCTATTGTTGCTTTGATTGATCCGGGGTTTA
1 TGTAATTAC-GGTACATTTTCTATCTATGAAACTTCTATTGTTGCTTTGATTGATCCGGGGTCTA
** * *
73031327 CCCATTCATATATTTGCATGAAGTTAATGTTTGATATGAACTTGTTTATTGAATCTACTGAGTTC
65 CCCATTCATATATTTGCATGAAGTTGGTGTCTGATATGAACTTGTTTGTTGAATCTACTGAGTTC
*
73031392 GTAATAAAGGTGTCAAACCCGTTAGGCAAGTATGTGTTATTTGATAAAGTGTGTAAAAATTGCCC
130 GTAATAAAGGTGTCAAACCCGTTAGGCAAGTATGTGTTAGTTGATAAAGTGTGTAAAAATTGCCC
* * *
73031457 TTTAATGATTAGAGGTCATTATTTTCCGGCTAATCTCATTCTATTACCATTTGACGAATTTGA
195 TTTAATGATTAGAGGTCATTATTTT-CGACTAATCTCATGCTATTACCGTTTGACGAATTTGA
73031520 TGTAATT
1 TGTAATT
73031527 CTTGGTATTG
Statistics
Matches: 486, Mismatches: 30, Indels: 13
0.92 0.06 0.02
Matches are distributed among these distances:
256 1 0.00
257 133 0.27
258 342 0.70
259 10 0.02
ACGTcount: A:0.28, C:0.14, G:0.19, T:0.40
Consensus pattern (256 bp):
TGTAATTACGGTACATTTTCTATCTATGAAACTTCTATTGTTGCTTTGATTGATCCGGGGTCTAC
CCATTCATATATTTGCATGAAGTTGGTGTCTGATATGAACTTGTTTGTTGAATCTACTGAGTTCG
TAATAAAGGTGTCAAACCCGTTAGGCAAGTATGTGTTAGTTGATAAAGTGTGTAAAAATTGCCCT
TTAATGATTAGAGGTCATTATTTTCGACTAATCTCATGCTATTACCGTTTGACGAATTTGA
Found at i:73035946 original size:48 final size:48
Alignment explanation
Indices: 73035891--73036015 Score: 178
Period size: 48 Copynumber: 2.6 Consensus size: 48
73035881 TGAGATCCCG
* *
73035891 TGTAAGACTATGTCTGGGACATGGCATCGGCATTGATATGTGTGCCAA
1 TGTAAGACCATGTCTAGGACATGGCATCGGCATTGATATGTGTGCCAA
* * *
73035939 TGTAAGACCATGTCTAGGACATGGCATTGGCGTTGATATGTGTGCCAG
1 TGTAAGACCATGTCTAGGACATGGCATCGGCATTGATATGTGTGCCAA
* **
73035987 TGTAAGACCATGTCTCGGTTATGGCATCG
1 TGTAAGACCATGTCTAGGACATGGCATCG
73036016 ATATGAGGTC
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 68 1.00
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.30
Consensus pattern (48 bp):
TGTAAGACCATGTCTAGGACATGGCATCGGCATTGATATGTGTGCCAA
Found at i:73041633 original size:39 final size:39
Alignment explanation
Indices: 73041579--73041708 Score: 161
Period size: 39 Copynumber: 3.3 Consensus size: 39
73041569 GACATTCAGT
**
73041579 GAATTATATCCGGACTTAGGGTCTGCAGGCCATGTGTTG
1 GAATTATATCCGGACTTAGGGTCTGCAGGCCATGTACTG
*
73041618 GAATTATATCCGGACTTAGGGTCTGCAGGCTATGTACTG
1 GAATTATATCCGGACTTAGGGTCTGCAGGCCATGTACTG
* ** * * *
73041657 GAATTATAACCGGACTTAAAGTCCGCAGGCTACGTACTG
1 GAATTATATCCGGACTTAGGGTCTGCAGGCCATGTACTG
* *
73041696 GAAATATGTCCGG
1 GAATTATATCCGG
73041709 GCTAAAGTCC
Statistics
Matches: 80, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 80 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (39 bp):
GAATTATATCCGGACTTAGGGTCTGCAGGCCATGTACTG
Found at i:73041722 original size:39 final size:39
Alignment explanation
Indices: 73041616--73041726 Score: 116
Period size: 39 Copynumber: 2.8 Consensus size: 39
73041606 GGCCATGTGT
* * ** * *
73041616 TGGAATTATATCCGGACTTAGGGTCTGCAGGCTATGTAC
1 TGGAAATATAACCGGACTTAAAGTCCGCAGGCTACGTAC
*
73041655 TGGAATTATAACCGGACTTAAAGTCCGCAGGCTACGTAC
1 TGGAAATATAACCGGACTTAAAGTCCGCAGGCTACGTAC
** *
73041694 TGGAAATATGTCCGGGC-TAAAGTCCCGCAGGCT
1 TGGAAATATAACCGGACTTAAAGT-CCGCAGGCT
73041727 TCGAGCTGGT
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
38 6 0.10
39 56 0.90
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
TGGAAATATAACCGGACTTAAAGTCCGCAGGCTACGTAC
Found at i:73042884 original size:20 final size:21
Alignment explanation
Indices: 73042852--73042890 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
73042842 GGACTAAATA
73042852 GAGAACTTTAGAAAAATTTAG
1 GAGAACTTTAGAAAAATTTAG
*
73042873 GAGAAC-TTAGAAGAATTT
1 GAGAACTTTAGAAAAATTT
73042891 TCATGAAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.46, C:0.05, G:0.21, T:0.28
Consensus pattern (21 bp):
GAGAACTTTAGAAAAATTTAG
Found at i:73044353 original size:48 final size:47
Alignment explanation
Indices: 73044278--73044505 Score: 180
Period size: 48 Copynumber: 4.9 Consensus size: 47
73044268 AACATGGTAG
* * * *
73044278 GATGCTAATGCCATATCCTAGATATGGTCATACATGGGATCACATATC
1 GATGCCAATGCCATGTCC-AGACATGGTCTTACATGGGATCACATATC
* * * **
73044326 GATGCCAATGCCATGTCGCAGACATGGTTTTACATAGGATCATAGGTC
1 GATGCCAATGCCATGTC-CAGACATGGTCTTACATGGGATCACATATC
* * *
73044374 GATGCCAATGCCATGTCCCAGACATGGTCTTACATAGGATCACACATT
1 GATGCCAATGCCATGT-CCAGACATGGTCTTACATGGGATCACATATC
* * * ** *
73044422 GATG-C--TG--ATAGCCCAG-CTATGGTCATACACGATATTACATATC
1 GATGCCAATGCCAT-GTCCAGAC-ATGGTCTTACATGGGATCACATATC
* *
73044465 GATGCCAAAGCCATGTCCTAGACATGGTTTTACATGGGATC
1 GATGCCAATGCCATGTCC-AGACATGGTCTTACATGGGATC
73044506 GTACATAACC
Statistics
Matches: 138, Mismatches: 31, Indels: 22
0.72 0.16 0.12
Matches are distributed among these distances:
42 1 0.01
43 27 0.20
44 2 0.01
45 2 0.01
46 1 0.01
47 4 0.03
48 98 0.71
49 3 0.02
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (47 bp):
GATGCCAATGCCATGTCCAGACATGGTCTTACATGGGATCACATATC
Found at i:73050311 original size:42 final size:42
Alignment explanation
Indices: 73050251--73050372 Score: 147
Period size: 43 Copynumber: 2.9 Consensus size: 42
73050241 TAGGGTTAGT
* * *
73050251 TGAGATTACGTGTCAGACCTTATCTGGGATATGGCATCGATA
1 TGAGATTACATGTAAGACCATATCTGGGATATGGCATCGATA
* * *
73050293 TGAGATTTCATGTAAGACCATAGT-TGGGCTAATGGTATCGATA
1 TGAGATTACATGTAAGACCATA-TCTGGGAT-ATGGCATCGATA
**
73050336 TGAGATCCCATGTAAGACCATATCTGGGATATGGCAT
1 TGAGATTACATGTAAGACCATATCTGGGATATGGCAT
73050373 TGGTATGATA
Statistics
Matches: 67, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
42 30 0.45
43 37 0.55
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (42 bp):
TGAGATTACATGTAAGACCATATCTGGGATATGGCATCGATA
Found at i:73053301 original size:42 final size:43
Alignment explanation
Indices: 73053193--73053350 Score: 158
Period size: 43 Copynumber: 3.7 Consensus size: 43
73053183 ATCTTGTACA
* * * * **
73053193 ATGCCAACATCCCAGACATGGTCTAACATGTAATCAAATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGAAATCTTATATCG
* * *
73053236 ATGCC-ACTGTCTCAGATAGGGTCTTACACGAAATCTTATA-CG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGAAATCTTATATCG
* * *
73053278 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCTCAAATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACG-AAATCTTATATCG
**
73053322 ATGCCAACGTCCCAGATGTGGTCTTACAC
1 ATGCCAACGTCCCAGACATGGTCTTACAC
73053351 AATAACACAT
Statistics
Matches: 93, Mismatches: 18, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
42 28 0.30
43 37 0.40
44 28 0.30
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGAAATCTTATATCG
Found at i:73056724 original size:53 final size:54
Alignment explanation
Indices: 73056634--73056846 Score: 250
Period size: 55 Copynumber: 3.9 Consensus size: 54
73056624 TACGTGGTAT
* * * * * *
73056634 CCTTTTGAAGCTTACCATTGCCATGTCTCGACATGGTCTTACATGGTATCTTTG
1 CCTTATGAAACTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCTTTG
* * *
73056688 CCTTATG-AACTTACCAATGCCGTGCCTTGGCATGGTCTTACATGGGACCTTTG
1 CCTTATGAAACTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCTTTG
* * * * *
73056741 CCTTATAGAAACATATCAATGCCATGTCTTGGCATGGTCTTACATGATATCCTTG
1 CCTTAT-GAAACTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCTTTG
*
73056796 CCTTA-GAAACCTTACCAATTGCCATGCCTTGGCATGGTCTTGCATGGTATC
1 CCTTATGAAA-CTTACCAA-TGCCATGCCTTGGCATGGTCTTACATGGTATC
73056847 CTTAAACCCT
Statistics
Matches: 133, Mismatches: 22, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
53 48 0.36
54 13 0.10
55 72 0.54
ACGTcount: A:0.22, C:0.25, G:0.19, T:0.34
Consensus pattern (54 bp):
CCTTATGAAACTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCTTTG
Found at i:73067897 original size:53 final size:54
Alignment explanation
Indices: 73067702--73067909 Score: 206
Period size: 55 Copynumber: 3.8 Consensus size: 54
73067692 ATTAGGGTTT
* * * * *
73067702 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGCAAGGTT-TTTAAGTC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGC-ATTGGTAA-GTTCTATAAGGC
** * *
73067757 AAGGATATTATGTAAGACCATGTCAAGACATGGCATTGATAAGTTTCTATAAGGAA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAG-TTCTATAAGG-C
* * * *
73067813 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCTATAAGGC
* ** *
73067865 AAGGATACCATGTAAGGCCATGTTGAGACATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTT
73067910 TCAAAAGGAT
Statistics
Matches: 124, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
52 4 0.03
53 39 0.31
54 11 0.09
55 66 0.53
56 4 0.03
ACGTcount: A:0.34, C:0.16, G:0.26, T:0.25
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCTATAAGGC
Found at i:73067908 original size:108 final size:110
Alignment explanation
Indices: 73067709--73067911 Score: 284
Period size: 108 Copynumber: 1.9 Consensus size: 110
73067699 TTTAAGGATA
** * **
73067709 CCATGTAAGACCATGCCAAGGCATGGCAATTGGCAAGGTTTTTAAGTCAAGGATATTATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGCAAGGTTCATAAGGCAAGGATACCATGTAAGA
*
73067774 CCATGTCAAGACATGGCATTGATAAGTTTCTATAAGGAAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTTCTATAAGGAAAAGGTC
** *
73067819 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-GTTCATAAGGCAAGGATACCATGTAAGG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGCAAGGTTCATAAGGCAAGGATACCATGTAAGA
** *
73067882 CCATGTTGAGACATGGCAATGGTAAGTTTC
66 CCATGTCAAGACATGGCAATGATAAGTTTC
73067912 AAAAGGATAC
Statistics
Matches: 81, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
108 48 0.59
109 6 0.07
110 27 0.33
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.25
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGCAAGGTTCATAAGGCAAGGATACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTTCTATAAGGAAAAGGTC
Found at i:73068170 original size:16 final size:16
Alignment explanation
Indices: 73068149--73068179 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
73068139 ATAAGTTTGA
73068149 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
73068165 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
73068180 ACTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:73075505 original size:55 final size:54
Alignment explanation
Indices: 73075379--73075594 Score: 206
Period size: 55 Copynumber: 4.0 Consensus size: 54
73075369 ATTACGGTTT
* * * **
73075379 AAGGATACCACGTAAGACCATG-CAAGGCATGGAAATTGGTAAGGTTTC-TAAGTC
1 AAGGATACCATGTAAGACCATGTCAAGACATGG-CATTGGTAA-GTTTCATAAGGA
* * *
73075433 AAGGATATCATGAAAGACCATGTCAAGACATGGCATTGATAAGTTTCTATAAGGGA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTTC-ATAA-GGA
* * * * * * *
73075489 AAGG-TCCCATGTAAGACCATGCCAAGGCGTGGCTTTGGTGAG-TTCATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTTCATAAGGA
* * *
73075541 AAGGATACCATGTAAGACCATGTCGAGACATGGCAATGGTAAGTTTCAAAAGGA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTTCATAAGGA
73075595 TACCACGTAA
Statistics
Matches: 128, Mismatches: 28, Indels: 12
0.76 0.17 0.07
Matches are distributed among these distances:
52 6 0.05
53 39 0.30
54 37 0.29
55 41 0.32
56 5 0.04
ACGTcount: A:0.35, C:0.16, G:0.26, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTTCATAAGGA
Found at i:73075846 original size:16 final size:16
Alignment explanation
Indices: 73075825--73075855 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
73075815 ATAAATTTTA
73075825 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
73075841 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
73075856 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:73076994 original size:33 final size:34
Alignment explanation
Indices: 73076949--73077015 Score: 100
Period size: 33 Copynumber: 2.0 Consensus size: 34
73076939 ACAATGCTTG
*
73076949 TAGTAACAGTCTGGGCTAGAGCCCTATTCAGTAA
1 TAGTAACAGTCTGGGCTAGAGCCCTATACAGTAA
**
73076983 TAGTAA-AGTCTGGGCTTTAGCCCTATACAGTAA
1 TAGTAACAGTCTGGGCTAGAGCCCTATACAGTAA
73077016 CGATGTGGGC
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
33 24 0.80
34 6 0.20
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.28
Consensus pattern (34 bp):
TAGTAACAGTCTGGGCTAGAGCCCTATACAGTAA
Found at i:73081587 original size:3 final size:3
Alignment explanation
Indices: 73081579--73081606 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
73081569 TATGTAATTA
73081579 TGT TGT TGT TGT TGT TGT TGT TGT TGT T
1 TGT TGT TGT TGT TGT TGT TGT TGT TGT T
73081607 TTAGGAACAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.32, T:0.68
Consensus pattern (3 bp):
TGT
Found at i:73094830 original size:249 final size:251
Alignment explanation
Indices: 73094352--73094851 Score: 808
Period size: 249 Copynumber: 2.0 Consensus size: 251
73094342 TGTACAATTG
*
73094352 AAAGAAAGGGTAAGTTTACGAAACCTCAATGTGTAATCCCCTATCAGTCGAACAGTAAACAATGT
1 AAAGAAAGGGTAAGTTTACGAAAACTCAATGTGTAATCCCCTATCAGTCGAACAGTAAACAATGT
* * *
73094417 TTGCAGTGATAATCTGGGCCAGAGCCCTATTCAATAATAGTAAAGTCTGGGCTTTAGCCTTATAC
66 TTGCAG-G---A--T--GCCAGAGCCCTATTCAATAACAGTAAAGTCTAGGCTTTAGCCCTATAC
*
73094482 AGTAATGGTGTGGGCCGAAGCCCAATTAGTATCAGAATAGTGCAGTCGTGTAACCCACCCCAATT
123 AGTAATGGTGTGGGCCGAAGCCCAATTAGTATCAGAATAGTGCAGTCATGTAACCCACCCCAATT
73094547 CAACCAGCACAACACCCGTACAAACCAACACACCATGTGGGGATTAAATTGACCCATACAGTTA
188 CAACCAGCACAACACCCGTACAAACCAACACACCATGTGGGGATTAAATTGACCCATACAGTTA
*
73094611 AAAGAAAGGGTGAGTTTACGAAAACTCAATGTGTAATCCCCTATCAGTCGAACAGTAAACAATGT
1 AAAGAAAGGGTAAGTTTACGAAAACTCAATGTGTAATCCCCTATCAGTCGAACAGTAAACAATGT
* *
73094676 TTGCA-G-T-CCAGAGCCCTATTCAGTAACAGTAAAGTTTAGGCTTTAGCCCTATACAGTAATGG
66 TTGCAGGATGCCAGAGCCCTATTCAATAACAGTAAAGTCTAGGCTTTAGCCCTATACAGTAATGG
73094738 TGTGGGCCGAAGCCCAATTCAGTATCAGAATAGTGCAGTCATGTAACCCACCCCAATTCAACCAG
131 TGTGGGCCGAAGCCCAATT-AGTATCAGAATAGTGCAGTCATGTAACCCACCCCAATTCAACCAG
* *
73094803 CACACCACCCGTACCAACCAACACACCATGTGGGGATTAAATTGACCCA
195 CACAACACCCGTACAAACCAACACACCATGTGGGGATTAAATTGACCCA
73094852 CCCAGCCAAC
Statistics
Matches: 230, Mismatches: 10, Indels: 12
0.91 0.04 0.05
Matches are distributed among these distances:
248 69 0.30
249 91 0.40
251 1 0.00
257 1 0.00
259 68 0.30
ACGTcount: A:0.34, C:0.24, G:0.19, T:0.23
Consensus pattern (251 bp):
AAAGAAAGGGTAAGTTTACGAAAACTCAATGTGTAATCCCCTATCAGTCGAACAGTAAACAATGT
TTGCAGGATGCCAGAGCCCTATTCAATAACAGTAAAGTCTAGGCTTTAGCCCTATACAGTAATGG
TGTGGGCCGAAGCCCAATTAGTATCAGAATAGTGCAGTCATGTAACCCACCCCAATTCAACCAGC
ACAACACCCGTACAAACCAACACACCATGTGGGGATTAAATTGACCCATACAGTTA
Found at i:73097688 original size:55 final size:54
Alignment explanation
Indices: 73097567--73097747 Score: 213
Period size: 55 Copynumber: 3.4 Consensus size: 54
73097557 GAACTTATGT
* * *
73097567 CTTGACATGGTCTTACGTGGTATCC-TTGCCTTAT-GAACTCACCAATGCCATGC
1 CTTGACATGGTCTTACATGGTA-CCTTTGCCTTATAGAACTTATCAATGCCATGC
* * * *
73097620 CTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTTATCAGTGCCATGT
1 CTTGACATGGTCTTACATGGTACCTTTGCCTTATAG-AACTTATCAATGCCATGC
* ** *
73097675 CTTGACATGGTCTTACATGATTTCTTTGCCTTATAGAACTTATCAATGTCATGC
1 CTTGACATGGTCTTACATGGTACCTTTGCCTTATAGAACTTATCAATGCCATGC
* *
73097729 CTTGGCATGCTCTTACATG
1 CTTGACATGGTCTTACATG
73097748 ATATCCTTAT
Statistics
Matches: 108, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
52 2 0.02
53 28 0.26
54 33 0.31
55 45 0.42
ACGTcount: A:0.21, C:0.24, G:0.19, T:0.36
Consensus pattern (54 bp):
CTTGACATGGTCTTACATGGTACCTTTGCCTTATAGAACTTATCAATGCCATGC
Found at i:73100654 original size:20 final size:20
Alignment explanation
Indices: 73100629--73100670 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
73100619 AATCAAACCG
73100629 TAATATCATAAAAAATTTCA
1 TAATATCATAAAAAATTTCA
*
73100649 TAATATCATCAAAAATTTCA
1 TAATATCATAAAAAATTTCA
73100669 TA
1 TA
73100671 CTCATTATCT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (20 bp):
TAATATCATAAAAAATTTCA
Found at i:73109138 original size:40 final size:40
Alignment explanation
Indices: 73109068--73109325 Score: 369
Period size: 40 Copynumber: 6.5 Consensus size: 40
73109058 AAGCCAAGTA
* * * *
73109068 CCTTCGGGACTTA-ACCGGGTATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
73109107 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
73109147 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
73109187 CCTTTGGGACTTAGCCCGGATATAGTAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
73109227 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAACTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
73109267 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
73109307 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
73109326 TTATCATCCA
Statistics
Matches: 200, Mismatches: 16, Indels: 5
0.90 0.07 0.02
Matches are distributed among these distances:
39 14 0.07
40 186 0.93
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:73117390 original size:26 final size:26
Alignment explanation
Indices: 73117361--73117412 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
73117351 CATATTCAGA
73117361 CATAACA-AATATAAATTCTAACATTT
1 CATAACAGAATATAAATT-TAACATTT
* *
73117387 CATAACAGCATATATATTTAACATTT
1 CATAACAGAATATAAATTTAACATTT
73117413 AACTACTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 15 0.65
27 8 0.35
ACGTcount: A:0.46, C:0.15, G:0.02, T:0.37
Consensus pattern (26 bp):
CATAACAGAATATAAATTTAACATTT
Found at i:73123690 original size:11 final size:11
Alignment explanation
Indices: 73123674--73123703 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
73123664 CTCGTTTCGC
*
73123674 TATCAACTCAT
1 TATCAACCCAT
73123685 TATCAACCCAT
1 TATCAACCCAT
73123696 TATCAACC
1 TATCAACC
73123704 TTCTAGGCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.37, C:0.33, G:0.00, T:0.30
Consensus pattern (11 bp):
TATCAACCCAT
Found at i:73126913 original size:21 final size:20
Alignment explanation
Indices: 73126887--73126925 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
73126877 CACGTTGGTA
73126887 AATTGGGCCTCAAGGGGCTGG
1 AATTGGGCC-CAAGGGGCTGG
*
73126908 AATTGGGCCCAATGGGCT
1 AATTGGGCCCAAGGGGCT
73126926 TCGGGCCATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.21, C:0.21, G:0.38, T:0.21
Consensus pattern (20 bp):
AATTGGGCCCAAGGGGCTGG
Found at i:73127304 original size:11 final size:11
Alignment explanation
Indices: 73127278--73127342 Score: 62
Period size: 11 Copynumber: 6.1 Consensus size: 11
73127268 ATTTTGATAT
73127278 ACATGATATG-
1 ACATGATATGC
73127288 ACATGATATGC
1 ACATGATATGC
73127299 ACATGATATG-
1 ACATGATATGC
** *
73127309 TTATGAGATGC
1 ACATGATATGC
*
73127320 ACATGATATAC
1 ACATGATATGC
* *
73127331 TCATTATATGC
1 ACATGATATGC
73127342 A
1 A
73127343 TGGGTTGGGT
Statistics
Matches: 42, Mismatches: 11, Indels: 3
0.75 0.20 0.05
Matches are distributed among these distances:
10 17 0.40
11 25 0.60
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.32
Consensus pattern (11 bp):
ACATGATATGC
Found at i:73127304 original size:21 final size:21
Alignment explanation
Indices: 73127278--73127328 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
73127268 ATTTTGATAT
*
73127278 ACATGATATGACATGATATGC
1 ACATGATATGACATGAGATGC
**
73127299 ACATGATATGTTATGAGATGC
1 ACATGATATGACATGAGATGC
73127320 ACATGATAT
1 ACATGATAT
73127329 ACTCATTATA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (21 bp):
ACATGATATGACATGAGATGC
Found at i:73127340 original size:32 final size:31
Alignment explanation
Indices: 73127280--73127340 Score: 77
Period size: 32 Copynumber: 1.9 Consensus size: 31
73127270 TTTGATATAC
* *
73127280 ATGATATGACATGATATGCACATGATATGTT
1 ATGAGATGACATGATATACACATGATATGTT
* *
73127311 ATGAGATGCACATGATATACTCATTATATG
1 ATGAGATG-ACATGATATACACATGATATG
73127341 CATGGGTTGG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
31 7 0.28
32 18 0.72
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.34
Consensus pattern (31 bp):
ATGAGATGACATGATATACACATGATATGTT
Found at i:73127410 original size:25 final size:25
Alignment explanation
Indices: 73127374--73127445 Score: 126
Period size: 25 Copynumber: 2.9 Consensus size: 25
73127364 GGAGGAAGTG
73127374 CAAAAAGGGCTTTGCCCCAGTTTAC
1 CAAAAAGGGCTTTGCCCCAGTTTAC
* *
73127399 CGAAAAGGGCTTTGCCCCAGTTTAT
1 CAAAAAGGGCTTTGCCCCAGTTTAC
73127424 CAAAAAGGGCTTTGCCCCAGTT
1 CAAAAAGGGCTTTGCCCCAGTT
73127446 ATTAAAAGAG
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 44 1.00
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (25 bp):
CAAAAAGGGCTTTGCCCCAGTTTAC
Found at i:73127458 original size:24 final size:24
Alignment explanation
Indices: 73127376--73127458 Score: 114
Period size: 25 Copynumber: 3.4 Consensus size: 24
73127366 AGGAAGTGCA
*
73127376 AAAAGGGCTTTGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTATC
73127400 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTATC
*
73127425 AAAAAGGGCTTTGCCCCAG-TTATT
1 -AAAAGGGCTTTGCCCCAGTTTATC
73127449 AAAAGAGGCT
1 AAAAG-GGCT
73127459 AGGCCTCCAG
Statistics
Matches: 54, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
23 5 0.09
24 8 0.15
25 41 0.76
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.25
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATC
Found at i:73127469 original size:50 final size:50
Alignment explanation
Indices: 73127374--73127470 Score: 126
Period size: 50 Copynumber: 1.9 Consensus size: 50
73127364 GGAGGAAGTG
**
73127374 CAAAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTTAT
1 CAAAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTAT
**
73127424 CAAAAAGGGCTTTGCCCCAG-TTA-TTAAAAGAGGCTAGGCCTCCAGTT
1 CAAAAAGGGCTTTGCCCCAGTTTACCGAAAAG-GGCTAGGCC-CCAGTT
73127471 ATGATAAAGC
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
48 5 0.12
49 10 0.24
50 26 0.63
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.25
Consensus pattern (50 bp):
CAAAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTAT
Found at i:73127731 original size:30 final size:31
Alignment explanation
Indices: 73127664--73127746 Score: 116
Period size: 31 Copynumber: 2.7 Consensus size: 31
73127654 CGCTTACAGT
* *
73127664 AAAGGCTTCGGCCCAGTGATATGAATTTTGA
1 AAAGGCTTCGGCCTAGTGATATGAATTATGA
*
73127695 AAAGGCTTCGGCCTAGTGTTATGAATTATG-
1 AAAGGCTTCGGCCTAGTGATATGAATTATGA
*
73127725 AAAGGCTTCAGCCTAGT-ATATG
1 AAAGGCTTCGGCCTAGTGATATG
73127747 TTGAGACTGA
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
29 4 0.09
30 16 0.34
31 27 0.57
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (31 bp):
AAAGGCTTCGGCCTAGTGATATGAATTATGA
Found at i:73128860 original size:27 final size:27
Alignment explanation
Indices: 73128830--73129197 Score: 457
Period size: 27 Copynumber: 13.6 Consensus size: 27
73128820 TTAGTTTACC
*
73128830 AAATTACCAAAATACCCCTGGTTTTTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
73128857 AAATTACTAAAATATCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
73128884 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
73128911 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
73128938 AAATTAGCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
73128965 AAATTACAAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
73128992 AAATCACCAAAATACCCCTGGTTTGAA
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
73129019 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
73129046 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
73129073 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
73129100 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
73129127 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
** *
73129154 AAATTACCAAAATACCCCTAATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
**
73129181 AAATTACTGAAATACCC
1 AAATTACCAAAATACCC
73129198 TCGACCTGTA
Statistics
Matches: 291, Mismatches: 50, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 291 1.00
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:73129211 original size:27 final size:27
Alignment explanation
Indices: 73129181--73129252 Score: 90
Period size: 27 Copynumber: 2.7 Consensus size: 27
73129171 CTAATTTGTG
* *
73129181 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACTAAAATACCATCGACCTGTA
* *
73129208 AAATTATTAAAATACCATCGACTTGTA
1 AAATTACTAAAATACCATCGACCTGTA
* *
73129235 AAATTACCAAAGTACCAT
1 AAATTACTAAAATACCAT
73129253 TGATTTATAG
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.43, C:0.21, G:0.08, T:0.28
Consensus pattern (27 bp):
AAATTACTAAAATACCATCGACCTGTA
Found at i:73129213 original size:54 final size:54
Alignment explanation
Indices: 73128830--73129198 Score: 542
Period size: 54 Copynumber: 6.8 Consensus size: 54
73128820 TTAGTTTACC
* * *
73128830 AAATTACCAAAATACCCCTGGTTTTTAAAATTACTAAAATATCCTTGGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
* * * *
73128884 AAATCACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
* *
73128938 AAATTAGCAAAATACCCCTAGTTTGTAAAATTACAAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
* * * * *
73128992 AAATCACCAAAATACCCCTGGTTTGAAAAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
73129046 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
* * *
73129100 AAATTACCAAAATACCCCTAGTTTGTAAAATTA-TCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACT-AAAATACCCTTGGTTTATA
* * *
73129154 AAATTACCAAAATACCCCTAATTTGTGAAATTACTGAAATACCCT
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCT
73129199 CGACCTGTAA
Statistics
Matches: 285, Mismatches: 28, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
53 1 0.00
54 283 0.99
55 1 0.00
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
Found at i:73129213 original size:108 final size:108
Alignment explanation
Indices: 73128823--73129198 Score: 599
Period size: 108 Copynumber: 3.5 Consensus size: 108
73128813 GAATACTTTA
* * * *
73128823 GTTTACCAAATTACCAAAATACCCCTGGTTTTTAAAATTACTAAAATATCCTTGGTTTATAAAAT
1 GTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAAT
73128888 CACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTG
66 CACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTG
* *
73128931 GTTTACAAAATTAGCAAAATACCCCTAGTTTGTAAAATTACAAAAATACCCTTGGTTTATAAAAT
1 GTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAAT
*
73128996 CACCAAAATACCCCTGGTTTGAAAAATTACCAAAATACCCTTG
66 CACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTG
73129039 GTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAAT
1 GTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAAT
* * * * *
73129104 TACCAAAATACCCCTAGTTTGTAAAATTATCAAAATACCCCTA
66 CACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTG
** * * *
73129147 GTTTGTAAAATTACCAAAATACCCCTAATTTGTGAAATTACTGAAATACCCT
1 GTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCT
73129199 CGACCTGTAA
Statistics
Matches: 248, Mismatches: 20, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
108 248 1.00
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.31
Consensus pattern (108 bp):
GTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAAT
CACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTG
Found at i:73129267 original size:81 final size:81
Alignment explanation
Indices: 73128882--73129270 Score: 272
Period size: 81 Copynumber: 4.8 Consensus size: 81
73128872 CCTTGGTTTA
* * * * * * *
73128882 TAAAATCACCAAAATACCCCTG-GTTTGTAAAATTACCAAAATACCCTTGGTTTACAAAATTAGC
1 TAAAATTATCAAAATACCCC-GAGCTTGTAAAATTACCAAAATACCCTTGATTTATAGAATTACC
* **
73128946 AAAATACCCCTAGTTTG
65 AAAATACCCCGAGCCTG
* * * * * * *
73128963 TAAAATTA-CAAAAATACCCTTG-GTTTATAAAATCACCAAAATACCCCTGGTTTGA-AAAATTA
1 TAAAATTATC-AAAATACCC-CGAGCTTGTAAAATTACCAAAATACCCTTGATTT-ATAGAATTA
* ** *
73129025 CCAAAATACCCTTG-GTTTA
63 CCAAAATACCC-CGAGCCTG
* * * * * * *
73129044 CAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATTACCA
1 TAAAATTATCAAAATACCCCGAGCTTGTAAAATTACCAAAATACCCTTGATTTATAGAATTACCA
* **
73129109 AAATACCCCTAGTTTG
66 AAATACCCCGAGCCTG
* * * * * *
73129125 TAAAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAATTTGT-GAAATTACT
1 TAAAATTATCAAAATACCCCGAGCTTGTAAAATTACCAAAATACCCTTGATTTATAG-AATTACC
*
73129189 GAAATACCCTCGA-CCTG
65 AAAATACCC-CGAGCCTG
* * * *
73129206 TAAAATTATTAAAATACCATCGA-CTTGTAAAATTACCAAAGTACCATTGATTTATAGAATTACC
1 TAAAATTATCAAAATACC-CCGAGCTTGTAAAATTACCAAAATACCCTTGATTTATAGAATTACC
73129270 A
65 A
73129271 TTTTACCCTC
Statistics
Matches: 253, Mismatches: 43, Indels: 24
0.79 0.13 0.08
Matches are distributed among these distances:
80 2 0.01
81 244 0.96
82 7 0.03
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.30
Consensus pattern (81 bp):
TAAAATTATCAAAATACCCCGAGCTTGTAAAATTACCAAAATACCCTTGATTTATAGAATTACCA
AAATACCCCGAGCCTG
Found at i:73129326 original size:27 final size:27
Alignment explanation
Indices: 73129290--73129755 Score: 585
Period size: 27 Copynumber: 17.3 Consensus size: 27
73129280 CAATTTACAA
*
73129290 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * * *
73129317 AAATATCGAAATACCCTTATAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
73129344 AAATACTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
73129371 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
73129398 AATTACTAAAATACCACTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
73129425 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
73129452 AATTACCGAAATACCCCTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
73129479 AATTACCAAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
73129506 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
73129533 AATTACTAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
73129560 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
73129587 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* **
73129614 AATTACCAAAATACCATTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
73129641 AATTATCGAAATACTCCTATACGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
73129668 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* **
73129695 AACTACTAAAATACCCCTGTAGGGT-G
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
73129721 AAATTACAGAGATACCCTTGT-GGGTTAA
1 -AATTACCGAAATACCCCTGTAGGG-TAG
73129749 AATTACC
1 AATTACC
73129756 ATTTTGCCCC
Statistics
Matches: 381, Mismatches: 55, Indels: 6
0.86 0.12 0.01
Matches are distributed among these distances:
26 4 0.01
27 377 0.99
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:73130189 original size:6 final size:6
Alignment explanation
Indices: 73130158--73130236 Score: 81
Period size: 6 Copynumber: 12.8 Consensus size: 6
73130148 TTGCATTCCC
* *
73130158 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
*
73130207 -TCACCTG ATTCTG ATTCTG ATTCTG ATTCT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCT
73130237 AGTTCTAATA
Statistics
Matches: 61, Mismatches: 6, Indels: 12
0.77 0.08 0.15
Matches are distributed among these distances:
5 3 0.05
6 50 0.82
7 6 0.10
8 2 0.03
ACGTcount: A:0.18, C:0.19, G:0.15, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:73130196 original size:31 final size:31
Alignment explanation
Indices: 73130158--73130236 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
73130148 TTGCATTCCC
* *
73130158 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTG
*
73130189 ATTCTGATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTG
73130220 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
73130237 AGTTCTAATA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.18, C:0.19, G:0.15, T:0.48
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTGATACTG
Found at i:73132535 original size:27 final size:27
Alignment explanation
Indices: 73132172--73132528 Score: 446
Period size: 27 Copynumber: 13.3 Consensus size: 27
73132162 TTAGTTTACC
* *
73132172 AAATTACCAAAACACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
73132199 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
73132226 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
73132253 AAATTACC-AAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
73132279 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
73132306 AAATTACAAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
73132333 AAATCACCAAAATACCCCTGGTTTGTT
1 AAATTACCAAAATACCCCTGGTTTGTA
* * **
73132360 AAATTACCAAAATATCCTTGGTTTAAA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
73132387 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
** * *
73132414 AAATTATTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
73132441 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
73132468 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
73132495 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
73132522 AAATTAC
1 AAATTAC
73132529 TGAAATAACC
Statistics
Matches: 277, Mismatches: 52, Indels: 2
0.84 0.16 0.01
Matches are distributed among these distances:
26 23 0.08
27 254 0.92
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:73132549 original size:81 final size:81
Alignment explanation
Indices: 73132172--73132599 Score: 371
Period size: 81 Copynumber: 5.3 Consensus size: 81
73132162 TTAGTTTACC
* * * * * * *
73132172 AAATTACCAAAACACCCCT-AGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATCACCAA
1 AAATTACCAAAATACCCCTGA-TTTGTAAAATTACCAAAATAACCTCGATTTGTAAAATTACCAA
*
73132236 AATACCCCTGGTTTGTA
65 AATACCCCTAGTTTGTA
* * ** * * *
73132253 AAATTACC-AAATACCCTTGGTTTACAAAATTACCAAAAT-ACCCCTAGTTTGTAAAATTACAAA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATAACCTCGA-TTTGTAAAATTACCAA
* * *
73132316 AATACCCTTGGTTTATA
65 AATACCCCTAGTTTGTA
* * * * * * **
73132333 AAATCACCAAAATACCCCTGGTTTGTTAAATTACCAAAATATCCTTGGTTTAAAAAATTACCAAA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATAACCTCGATTTGTAAAATTACCAAA
73132398 ATACCCCTAGTTTGTA
66 ATACCCCTAGTTTGTA
** * * * * * *
73132414 AAATTATTAAAATACCCTTGGTTTATAAAATTACCAAAAT-ACCCCTAGTTTGTAAAATTATCAA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATAACCTCGA-TTTGTAAAATTACCAA
73132478 AATACCCCTAGTTTGTA
65 AATACCCCTAGTTTGTA
* ** ** ***
73132495 AAATTACCAAAATACCCCTGATTTGTGAAATTACTGAAATAACCTCGACCTGTAAAATTATTGAA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATAACCTCGATTTGTAAAATTACCAAA
* *
73132560 ATA-CCCTCGACTTGTA
66 ATACCCCTAG-TTTGTA
* *
73132576 AAATTACCAAAGTACCCTTGATTT
1 AAATTACCAAAATACCCCTGATTT
73132600 ACAGAATTAT
Statistics
Matches: 276, Mismatches: 64, Indels: 14
0.78 0.18 0.04
Matches are distributed among these distances:
79 2 0.01
80 66 0.24
81 201 0.73
82 7 0.03
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (81 bp):
AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATAACCTCGATTTGTAAAATTACCAAA
ATACCCCTAGTTTGTA
Found at i:73132554 original size:54 final size:54
Alignment explanation
Indices: 73132172--73132535 Score: 527
Period size: 54 Copynumber: 6.8 Consensus size: 54
73132162 TTAGTTTACC
*
73132172 AAATTACCAAAACACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
* * * *
73132226 AAATCACCAAAATACCCCTGGTTTGTAAAATTAC-CAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
*
73132279 AAATTACCAAAATACCCCTAGTTTGTAAAATTACAAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
* * * * * *
73132333 AAATCACCAAAATACCCCTGGTTTGTTAAATTACCAAAATATCCTTGGTTTAAA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
*
73132387 AAATTACCAAAATACCCCTAGTTTGTAAAATTATTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
* * *
73132441 AAATTACCAAAATACCCCTAGTTTGTAAAATTA-TCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACT-AAAATACCCTTGGTTTATA
* *
73132495 AAATTACCAAAATACCCCT-GATTTGTGAAATTACTGAAATA
1 AAATTACCAAAATACCCCTAG-TTTGTAAAATTACTAAAATA
73132536 ACCTCGACCT
Statistics
Matches: 279, Mismatches: 27, Indels: 8
0.89 0.09 0.03
Matches are distributed among these distances:
53 51 0.18
54 227 0.81
55 1 0.00
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
Found at i:73132591 original size:27 final size:27
Alignment explanation
Indices: 73132172--73132599 Score: 307
Period size: 27 Copynumber: 15.9 Consensus size: 27
73132162 TTAGTTTACC
* *
73132172 AAATTACCAAAACACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
* * * *
73132199 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
73132226 AAATCACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
* * **
73132253 AAATTACC-AAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
*
73132279 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
* * * *
73132306 AAATTACAAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTCGATTTGTA
* * *
73132333 AAATCACCAAAATACCC-CTGGTTTGTT
1 AAATTACCAAAATACCCTC-GATTTGTA
* * * **
73132360 AAATTACCAAAATATCCTTGGTTTAAA
1 AAATTACCAAAATACCCTCGATTTGTA
*
73132387 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
** * * *
73132414 AAATTATTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTCGATTTGTA
*
73132441 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
* *
73132468 AAATTATCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
*
73132495 AAATTACCAAAATACCC-CTGATTTGTG
1 AAATTACCAAAATACCCTC-GATTTGTA
** * **
73132522 AAATTACTGAAATAACCTCGACCTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
*** *
73132549 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
73132576 AAATTACCAAAGTACCCTTGATTT
1 AAATTACCAAAATACCCTCGATTT
73132600 ACAGAATTAT
Statistics
Matches: 316, Mismatches: 72, Indels: 26
0.76 0.17 0.06
Matches are distributed among these distances:
26 22 0.07
27 292 0.92
28 2 0.01
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTGTA
Found at i:73132613 original size:12 final size:12
Alignment explanation
Indices: 73132596--73132621 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
73132586 AGTACCCTTG
73132596 ATTTACAGAATT
1 ATTTACAGAATT
73132608 ATTTACAGAATT
1 ATTTACAGAATT
73132620 AT
1 AT
73132622 CATTTTACCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.08, G:0.08, T:0.42
Consensus pattern (12 bp):
ATTTACAGAATT
Found at i:73132681 original size:27 final size:27
Alignment explanation
Indices: 73132643--73133135 Score: 626
Period size: 27 Copynumber: 18.3 Consensus size: 27
73132633 CGATTTATAA
* *
73132643 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * * *
73132670 AAATGCCAAAATACCCTTGTAGGCTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
73132697 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
73132724 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
73132751 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
73132778 AATTATCGAAATACCCCTGTATGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
73132805 AATTACCGAAATACCCTTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
73132832 AATTACCGAAATAACCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
73132859 AAATACCGAAATACTCCTGTACGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
**
73132886 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
73132913 AATTATCGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
73132940 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * * *
73132967 AACTATCGAAATACTCTTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
*
73132994 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
73133021 AATTACCGAAATACCACTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
73133048 AATTATCAAAATACCCCTATAGAGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * *
73133075 AATTACTAAAATACCCTTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
73133102 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
73133129 AATTACC
1 AATTACC
73133136 ATTTTGCCGC
Statistics
Matches: 404, Mismatches: 62, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 404 1.00
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:73133569 original size:6 final size:6
Alignment explanation
Indices: 73133542--73133616 Score: 73
Period size: 6 Copynumber: 12.2 Consensus size: 6
73133532 ATTCCCATCT
* * *
73133542 TGATTT TGATTC TG-TTACC TGATAC TGATTC TGATTC TGATTC TG-TCACC
1 TGATTC TGATTC TGATT--C TGATTC TGATTC TGATTC TGATTC TGAT--TC
73133592 TGATTC TGATTC TGATTC TGATTC T
1 TGATTC TGATTC TGATTC TGATTC T
73133617 AGTTCTAATA
Statistics
Matches: 58, Mismatches: 5, Indels: 12
0.77 0.07 0.16
Matches are distributed among these distances:
5 3 0.05
6 47 0.81
7 6 0.10
8 2 0.03
ACGTcount: A:0.17, C:0.19, G:0.16, T:0.48
Consensus pattern (6 bp):
TGATTC
Found at i:73133583 original size:31 final size:31
Alignment explanation
Indices: 73133542--73133616 Score: 123
Period size: 31 Copynumber: 2.4 Consensus size: 31
73133532 ATTCCCATCT
* *
73133542 TGATTTTGATTCTGTTACCTGATACTGATTC
1 TGATTCTGATTCTGTCACCTGATACTGATTC
*
73133573 TGATTCTGATTCTGTCACCTGATTCTGATTC
1 TGATTCTGATTCTGTCACCTGATACTGATTC
73133604 TGATTCTGATTCT
1 TGATTCTGATTCT
73133617 AGTTCTAATA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.17, C:0.19, G:0.16, T:0.48
Consensus pattern (31 bp):
TGATTCTGATTCTGTCACCTGATACTGATTC
Found at i:73141520 original size:11 final size:10
Alignment explanation
Indices: 73141485--73141541 Score: 53
Period size: 10 Copynumber: 5.6 Consensus size: 10
73141475 CATGAGATTT
73141485 TGATAT-ACA
1 TGATATGACA
73141494 TGATATGACA
1 TGATATGACA
*
73141504 TGATATGCACG
1 TGATATG-ACA
**
73141515 TGATATGTTA
1 TGATATGACA
*
73141525 TGAGATGCACA
1 TGATATG-ACA
73141536 TGATAT
1 TGATAT
73141542 ACTCATTATA
Statistics
Matches: 37, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
9 6 0.16
10 16 0.43
11 15 0.41
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.33
Consensus pattern (10 bp):
TGATATGACA
Found at i:73141520 original size:21 final size:21
Alignment explanation
Indices: 73141491--73141541 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
73141481 ATTTTGATAT
*
73141491 ACATGATATGACATGATATGC
1 ACATGATATGACATGAGATGC
* **
73141512 ACGTGATATGTTATGAGATGC
1 ACATGATATGACATGAGATGC
73141533 ACATGATAT
1 ACATGATAT
73141542 ACTCATTATA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.35, C:0.12, G:0.22, T:0.31
Consensus pattern (21 bp):
ACATGATATGACATGAGATGC
Found at i:73141623 original size:25 final size:25
Alignment explanation
Indices: 73141587--73141658 Score: 117
Period size: 25 Copynumber: 2.9 Consensus size: 25
73141577 AGAGGAAGTG
*
73141587 CAAAAAGGGCTTTGCCCTAGTTTAC
1 CAAAAAGGGCTTTGCCCCAGTTTAC
* *
73141612 CGAAAAGGGCTTTGCCCCAGTTTAT
1 CAAAAAGGGCTTTGCCCCAGTTTAC
73141637 CAAAAAGGGCTTTGCCCCAGTT
1 CAAAAAGGGCTTTGCCCCAGTT
73141659 ATTAAAAGAG
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.26
Consensus pattern (25 bp):
CAAAAAGGGCTTTGCCCCAGTTTAC
Found at i:73141671 original size:24 final size:24
Alignment explanation
Indices: 73141589--73141685 Score: 83
Period size: 25 Copynumber: 4.0 Consensus size: 24
73141579 AGGAAGTGCA
* *
73141589 AAAAG-GGCTTTGCCCTAGTTTACC
1 AAAAGAGGCTTTGCCCCAG-TTATC
73141613 GAAAAG-GGCTTTGCCCCAGTTTATC
1 -AAAAGAGGCTTTGCCCCAG-TTATC
*
73141638 AAAA-AGGGCTTTGCCCCAGTTATT
1 AAAAGA-GGCTTTGCCCCAGTTATC
**
73141662 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAGAGGCTTTGCC-CCAGTTAT
73141686 GATAAAGCAG
Statistics
Matches: 63, Mismatches: 5, Indels: 8
0.83 0.07 0.11
Matches are distributed among these distances:
24 19 0.30
25 44 0.70
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGAGGCTTTGCCCCAGTTATC
Found at i:73141682 original size:50 final size:50
Alignment explanation
Indices: 73141587--73141683 Score: 117
Period size: 50 Copynumber: 1.9 Consensus size: 50
73141577 AGAGGAAGTG
* **
73141587 CAAAAAGGGCTTTGCCCTAGTTTACCGAAAAGGGCTTTGCCCCAGTTTAT
1 CAAAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTAT
**
73141637 CAAAAAGGGCTTTGCCCCAG-TTA-TTAAAAGAGGCTAGGCCTCCAGTT
1 CAAAAAGGGCTTTGCCCCAGTTTACCGAAAAG-GGCTAGGCC-CCAGTT
73141684 ATGATAAAGC
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
48 5 0.12
49 10 0.25
50 25 0.62
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.26
Consensus pattern (50 bp):
CAAAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTAT
Found at i:73141944 original size:30 final size:31
Alignment explanation
Indices: 73141877--73141959 Score: 116
Period size: 31 Copynumber: 2.7 Consensus size: 31
73141867 TGCTTACAGT
* *
73141877 AAAGGCTTCGTCCCAGTGATATGAATTTTGA
1 AAAGGCTTCGGCCCAGTGATATGAATTATGA
*
73141908 AAAGGCTTCGGCCCAGTGTTATGAATTATG-
1 AAAGGCTTCGGCCCAGTGATATGAATTATGA
*
73141938 AAAGGCTTCAGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
73141960 TTGAGACTGA
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
29 4 0.09
30 16 0.34
31 27 0.57
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATTATGA
Found at i:73147556 original size:39 final size:39
Alignment explanation
Indices: 73147506--73147595 Score: 110
Period size: 39 Copynumber: 2.3 Consensus size: 39
73147496 TTTAAGCCCA
* * *
73147506 GATATATTTCCAGCACATAGCCTGCAGG-CTTCAAGTCGG
1 GATATGTTTCCAGCACATAGCCTGC-GGACCTCAAGTCCG
* *
73147545 GATATGTTTCCAGCACGTAGCTTGCGGACCTCAAGTCCG
1 GATATGTTTCCAGCACATAGCCTGCGGACCTCAAGTCCG
*
73147584 AATATGTTTCCA
1 GATATGTTTCCA
73147596 ATTATCATGC
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
38 2 0.05
39 42 0.95
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (39 bp):
GATATGTTTCCAGCACATAGCCTGCGGACCTCAAGTCCG
Found at i:73150342 original size:13 final size:13
Alignment explanation
Indices: 73150324--73150350 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
73150314 GGTAAAGCCT
73150324 CGTAACCCTAGTC
1 CGTAACCCTAGTC
73150337 CGTAACCCTAGTC
1 CGTAACCCTAGTC
73150350 C
1 C
73150351 AGCGATAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.41, G:0.15, T:0.22
Consensus pattern (13 bp):
CGTAACCCTAGTC
Found at i:73175250 original size:6 final size:6
Alignment explanation
Indices: 73175239--73175516 Score: 243
Period size: 6 Copynumber: 45.8 Consensus size: 6
73175229 AACCAAAATG
*
73175239 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* * *
73175287 AGTAA-C AGAATC AGAATC AGAATC AAAATC AGAATT AG-GTGAC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC
* * *
73175336 AGAATC AGAATC AGTAA-C AGAATC TGAATC AGAATC AGTATT AGTAA-C
1 AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AG-AATC
* * *
73175384 AGAATC AGAATC AAAATC AGAATT ACGTGA-C AGAATC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC
* *
73175433 AGTAA-C AGAATC AGAATC AGAATC AGTATT AGTAA-C AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC
* *
73175481 AGAATC AGAATT ACGTGA-C AGAATC AGAATC AGAAT
1 AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAAT
73175517 GTGAATGCAA
Statistics
Matches: 221, Mismatches: 28, Indels: 46
0.75 0.09 0.16
Matches are distributed among these distances:
5 16 0.07
6 186 0.84
7 15 0.07
8 4 0.02
ACGTcount: A:0.48, C:0.15, G:0.17, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:73175254 original size:30 final size:29
Alignment explanation
Indices: 73175218--73175516 Score: 272
Period size: 30 Copynumber: 10.1 Consensus size: 29
73175208 AAGAAACATT
* * *
73175218 ATCAGAATTGGAACCAAAATGAGAATCAGA
1 ATCAGAATTGTAA-CAGAATCAGAATCAGA
*
73175248 ATCAGAATCAGTAACAGAATCAGAATCAGA
1 ATCAGAAT-TGTAACAGAATCAGAATCAGA
73175278 ATCA-ATATTAGTAACAGAATCAGAATCAGA
1 ATCAGA-ATT-GTAACAGAATCAGAATCAGA
* * * *
73175308 ATCAAAATCAG-AATTAG-GTGACAGAATCAGA
1 ATCAGAAT-TGTAA-CAGAAT--CAGAATCAGA
* *
73175339 ATCAGAATCAGTAACAGAATCTGAATCAGA
1 ATCAGAAT-TGTAACAGAATCAGAATCAGA
* *
73175369 ATCAGTATTAGTAACAGAATCAGAATCAAA
1 ATCAGAATT-GTAACAGAATCAGAATCAGA
*
73175399 ATCAGAATTACGTGACAGAATCAGAATCAGA
1 ATCAGAATT--GTAACAGAATCAGAATCAGA
73175430 ATC---A--GTAACAGAATCAGAATCAGA
1 ATCAGAATTGTAACAGAATCAGAATCAGA
*
73175454 ATCAGTATTAGTAACAGAATCAGAATCAGA
1 ATCAGAATT-GTAACAGAATCAGAATCAGA
*
73175484 ATCAGAATTACGTGACAGAATCAGAATCAGA
1 ATCAGAATT--GTAACAGAATCAGAATCAGA
73175515 AT
1 AT
73175517 GTGAATGCAA
Statistics
Matches: 226, Mismatches: 24, Indels: 37
0.79 0.08 0.13
Matches are distributed among these distances:
24 22 0.10
27 1 0.00
28 1 0.00
29 4 0.02
30 127 0.56
31 68 0.30
32 3 0.01
ACGTcount: A:0.48, C:0.15, G:0.17, T:0.20
Consensus pattern (29 bp):
ATCAGAATTGTAACAGAATCAGAATCAGA
Found at i:73175387 original size:85 final size:85
Alignment explanation
Indices: 73175239--73175516 Score: 466
Period size: 85 Copynumber: 3.2 Consensus size: 85
73175229 AACCAAAATG
*
73175239 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGT-----AA-CAGAAT
*
73175304 CAGAATCAAAATCAGAATTAGGTGAC
60 CAGAATCAAAATCAGAATTACGTGAC
*
73175330 AGAATCAGAATCAGAATCAGTAACAGAATCTGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
73175395 CAAAATCAGAATTACGTGAC
66 CAAAATCAGAATTACGTGAC
73175415 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
*
73175480 CAGAATCAGAATTACGTGAC
66 CAAAATCAGAATTACGTGAC
73175500 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
73175517 GTGAATGCAA
Statistics
Matches: 182, Mismatches: 5, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
85 131 0.72
86 2 0.01
91 49 0.27
ACGTcount: A:0.48, C:0.15, G:0.17, T:0.20
Consensus pattern (85 bp):
AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
CAAAATCAGAATTACGTGAC
Found at i:73175671 original size:27 final size:26
Alignment explanation
Indices: 73175633--73175692 Score: 84
Period size: 27 Copynumber: 2.3 Consensus size: 26
73175623 CAGCATGGCT
*
73175633 ACCAGAACAGATATCGTGACAGAGTC
1 ACCAGAACAGATATCGTGACAGAGCC
* *
73175659 ACCAGATACAGATATTGTGGCAGAGCC
1 ACCAGA-ACAGATATCGTGACAGAGCC
73175686 ACCAGAA
1 ACCAGAA
73175693 TTAGATAATG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 7 0.23
27 23 0.77
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.15
Consensus pattern (26 bp):
ACCAGAACAGATATCGTGACAGAGCC
Found at i:73175698 original size:27 final size:27
Alignment explanation
Indices: 73175633--73175707 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
73175623 CAGCATGGCT
* * *
73175633 ACCAGAA-CAGATATCGTGACAGAGTC
1 ACCAGAATCAGATATTGTGGCAGAGCC
73175659 ACCAG-ATACAGATATTGTGGCAGAGCC
1 ACCAGAAT-CAGATATTGTGGCAGAGCC
* *
73175686 ACCAGAATTAGATAATGTGGCA
1 ACCAGAATCAGATATTGTGGCA
73175708 AACCCACCTA
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
25 1 0.02
26 5 0.12
27 33 0.80
28 2 0.05
ACGTcount: A:0.37, C:0.20, G:0.24, T:0.19
Consensus pattern (27 bp):
ACCAGAATCAGATATTGTGGCAGAGCC
Found at i:73175905 original size:22 final size:22
Alignment explanation
Indices: 73175873--73175930 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
73175863 TAAATACGTT
*
73175873 TGGCACGAAGCCATAGTCAAGA
1 TGGCACAAAGCCATAGTCAAGA
* * * *
73175895 TGGCACAAAGCCATATTTAGGT
1 TGGCACAAAGCCATAGTCAAGA
73175917 TGGCACAAAGCCAT
1 TGGCACAAAGCCAT
73175931 TAATAACGGG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.19
Consensus pattern (22 bp):
TGGCACAAAGCCATAGTCAAGA
Found at i:73176094 original size:27 final size:26
Alignment explanation
Indices: 73176015--73176096 Score: 101
Period size: 27 Copynumber: 3.1 Consensus size: 26
73176005 TCGATCGGTC
* * *
73176015 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
*
73176041 ATATAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
73176068 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
73176095 AA
1 AA
73176097 TGCTTCCTCC
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
26 7 0.15
27 41 0.85
ACGTcount: A:0.38, C:0.20, G:0.22, T:0.21
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:73176325 original size:27 final size:27
Alignment explanation
Indices: 73176295--73176490 Score: 223
Period size: 27 Copynumber: 7.3 Consensus size: 27
73176285 GGGGCAAAAT
* * *
73176295 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
73176322 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
73176349 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
73176376 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
73176403 GGTAATTCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
73176430 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
73176457 GGAAATACTACCTTAC-AGTGGTATTTC
1 GGTAATTCTACCCTACAAG-GGTATTTC
*
73176484 AGTAATT
1 GGTAATT
73176491 TCACAATCAA
Statistics
Matches: 141, Mismatches: 27, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
26 1 0.01
27 140 0.99
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:73176531 original size:27 final size:27
Alignment explanation
Indices: 73176495--73177199 Score: 717
Period size: 27 Copynumber: 26.2 Consensus size: 27
73176485 GTAATTTCAC
*
73176495 AATCAAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * *
73176522 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * * * *
73176549 AA-CTAAGG-ATAACCAGTAATTCTGTA
1 AATCGAGGGTA-AAACGGTAATTCTATA
* * * *
73176575 AATCAAGGGTAAAACGATAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
73176602 AATCGAGGGTAAAACGATAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
** * *
73176629 AATCGAGGGTAAAATAGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
73176656 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
**
73176683 AATCGAGGGTAAAATAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * *
73176710 AA-CTGA-GGTAAAACGATAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTCTATA
** *
73176736 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
73176763 AA-CTAAGGGTAAAATGGTAATTCTATA
1 AATC-GAGGGTAAAACGGTAATTCTATA
* *
73176790 AATCGAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTATA
**
73176817 AATTAAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * *
73176844 AATCGAGGGTAAAGCAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
73176871 AA-CTGAGGGTAAAACGATAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTATA
* ** *
73176898 AATCGATGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
73176925 AA-CTGAGGGTAAAACGGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTCTATA
* * * *
73176952 AATCAAGGGTAAAATGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTATA
73176979 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
*** *
73177006 AATCGAGGGTAAAATAATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
73177033 AA-CTGAGGGTAAAATGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTATA
** *
73177060 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
73177087 AA-CTGAGGGTAAAACGGTAATTCTATA
1 AATC-GAGGGTAAAACGGTAATTCTATA
* *
73177114 AATCGAGGGTAAAACGGTAATTTTAAA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
73177141 AATCGAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
73177168 AATTGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
73177195 AATCG
1 AATCG
73177200 GGAGTACTTT
Statistics
Matches: 567, Mismatches: 95, Indels: 32
0.82 0.14 0.05
Matches are distributed among these distances:
25 1 0.00
26 43 0.08
27 517 0.91
28 6 0.01
ACGTcount: A:0.42, C:0.09, G:0.21, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTATA
Found at i:73184246 original size:44 final size:44
Alignment explanation
Indices: 73184135--73184266 Score: 155
Period size: 44 Copynumber: 3.0 Consensus size: 44
73184125 TTACATGTAA
* *
73184135 TCAAATATCAATGCC-ACTGTCCCAGACAGGGTCTTACACGAAA--
1 TCAAATA-CGATGCCAAC-GTCCCAGACATGGTCTTACACGAAATC
* * *
73184178 TCATATACGACGCCAATGTCCCAGACATGGTCTTACACGTAAATC
1 TCAAATACGATGCCAACGTCCCAGACATGGTCTTACACG-AAATC
*
73184223 TCAAAT-CGATGCCAACGTCCCAGACATGGTCTTACATGAAATC
1 TCAAATACGATGCCAACGTCCCAGACATGGTCTTACACGAAATC
73184266 T
1 T
73184267 TGTACCAAAA
Statistics
Matches: 76, Mismatches: 9, Indels: 8
0.82 0.10 0.09
Matches are distributed among these distances:
42 26 0.34
43 16 0.21
44 29 0.38
45 5 0.07
ACGTcount: A:0.33, C:0.28, G:0.16, T:0.23
Consensus pattern (44 bp):
TCAAATACGATGCCAACGTCCCAGACATGGTCTTACACGAAATC
Found at i:73188411 original size:29 final size:29
Alignment explanation
Indices: 73188345--73188463 Score: 136
Period size: 29 Copynumber: 4.2 Consensus size: 29
73188335 TACATACATG
* *
73188345 CATATGGCCCACTAGGCCCAA-TCTTATT
1 CATATGGCCCATTAGGCCCAATTCATATT
* * *
73188373 CAAATGGCCCATTTGGCCCAGTTCATATT
1 CATATGGCCCATTAGGCCCAATTCATATT
* *
73188402 C-TGATGGCCCACTAGGCCCAATTCTTATT
1 CAT-ATGGCCCATTAGGCCCAATTCATATT
*
73188431 CATATGGCCCATTAGGCCCAAATCATATT
1 CATATGGCCCATTAGGCCCAATTCATATT
73188460 -ATAT
1 CATAT
73188464 TCATGCTCAC
Statistics
Matches: 75, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
28 21 0.28
29 53 0.71
30 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.15, T:0.30
Consensus pattern (29 bp):
CATATGGCCCATTAGGCCCAATTCATATT
Found at i:73188443 original size:58 final size:57
Alignment explanation
Indices: 73188348--73188459 Score: 179
Period size: 58 Copynumber: 1.9 Consensus size: 57
73188338 ATACATGCAT
* **
73188348 ATGGCCCACTAGGCCCAATCTTATTCAAATGGCCCATTTGGCCCAGTTCATATTCTG
1 ATGGCCCACTAGGCCCAATCTTATTCAAATGGCCCATTAGGCCCAAATCATATTCTG
*
73188405 ATGGCCCACTAGGCCCAATTCTTATTCATATGGCCCATTAGGCCCAAATCATATT
1 ATGGCCCACTAGGCCCAA-TCTTATTCAAATGGCCCATTAGGCCCAAATCATATT
73188460 ATATTCATGC
Statistics
Matches: 50, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
57 18 0.36
58 32 0.64
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.29
Consensus pattern (57 bp):
ATGGCCCACTAGGCCCAATCTTATTCAAATGGCCCATTAGGCCCAAATCATATTCTG
Found at i:73192950 original size:58 final size:57
Alignment explanation
Indices: 73192840--73192952 Score: 129
Period size: 58 Copynumber: 2.0 Consensus size: 57
73192830 CATACATGCA
****
73192840 TATGGCCCACTACGCCCAATCTTATTCAAATGGCCCATCTGGCCTGGTTCATATTCT
1 TATGGCCCACTACGCCCAATCTTATTCAAATGGCCCATCTGGCCCAAATCATATTCT
* * * *
73192897 TATGGCCCACTAGGCCTAATTTTCATTCATATGGCCCAT-TAGGCCCAAATCATATT
1 TATGGCCCACTACGCCCAATCTT-ATTCAAATGGCCCATCT-GGCCCAAATCATATT
73192953 ATATTCATGC
Statistics
Matches: 46, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
57 21 0.46
58 25 0.54
ACGTcount: A:0.24, C:0.29, G:0.15, T:0.32
Consensus pattern (57 bp):
TATGGCCCACTACGCCCAATCTTATTCAAATGGCCCATCTGGCCCAAATCATATTCT
Found at i:73202583 original size:119 final size:120
Alignment explanation
Indices: 73202377--73202599 Score: 274
Period size: 119 Copynumber: 1.9 Consensus size: 120
73202367 TCCTCGTTCA
* *
73202377 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* * *
73202442 TTAGTAACTCGCACAAATGCCTTTGGGAATTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTAGCACAAATGCCTTCGGGAATTAACCCGGATTTAGTAACTCGCACC
* * **
73202497 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * * *
73202559 ATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
64 ATATAGTAAC-TAGCACAAATGCCTTCGGGAATTAACCCGGA
73202600 CATCATTCAA
Statistics
Matches: 87, Mismatches: 13, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
118 4 0.05
119 63 0.72
120 20 0.23
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTAGCACAAATGCCTTCGGGAATTAACCCGGATTTAGTAACTCGCACC
Found at i:73202599 original size:40 final size:40
Alignment explanation
Indices: 73202375--73202599 Score: 260
Period size: 40 Copynumber: 5.7 Consensus size: 40
73202365 GCTCCTCGTT
* *
73202375 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
73202415 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * * *
73202455 CAAATGCCTTTGGGAATTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
73202495 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
73202534 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
73202575 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
73202600 CATCATTCAA
Statistics
Matches: 158, Mismatches: 21, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
38 2 0.01
39 30 0.19
40 114 0.72
41 12 0.08
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:73214613 original size:20 final size:20
Alignment explanation
Indices: 73214529--73214615 Score: 70
Period size: 20 Copynumber: 4.4 Consensus size: 20
73214519 TCCAATAACA
73214529 CACCAGT-TTGTGGACAAGC
1 CACCAGTATTGTGGACAAGC
* * *
73214548 CACTAGTATTGCT-GATAAAC
1 CACCAGTATTG-TGGACAAGC
** * *
73214568 TGCCAGTATTGTAGACAAGT
1 CACCAGTATTGTGGACAAGC
**
73214588 TGCCAGTATTGTGGACAAGC
1 CACCAGTATTGTGGACAAGC
73214608 CACCAGTA
1 CACCAGTA
73214616 ATACATATAA
Statistics
Matches: 52, Mismatches: 13, Indels: 5
0.74 0.19 0.07
Matches are distributed among these distances:
19 7 0.13
20 44 0.85
21 1 0.02
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (20 bp):
CACCAGTATTGTGGACAAGC
Found at i:73214638 original size:60 final size:59
Alignment explanation
Indices: 73214531--73214646 Score: 153
Period size: 60 Copynumber: 1.9 Consensus size: 59
73214521 CAATAACACA
* * * * *
73214531 CCAGTTTGTGGACAAGCCACTAGTATTGCTGATAAACTGCCAGTATTGTAGACAAGTTG
1 CCAGTTTGTGGACAAGCCACCAGTAATACTGATAAACTACCAATATTGTAGACAAGTTG
*
73214590 CCAGTATTGTGGACAAGCCACCAGTAATACAT-ATAAACTACCAATATTGTGGACAAG
1 CCAGT-TTGTGGACAAGCCACCAGTAATAC-TGATAAACTACCAATATTGTAGACAAG
73214647 CCACCAATAA
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
59 5 0.10
60 43 0.88
61 1 0.02
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.26
Consensus pattern (59 bp):
CCAGTTTGTGGACAAGCCACCAGTAATACTGATAAACTACCAATATTGTAGACAAGTTG
Found at i:73219059 original size:45 final size:46
Alignment explanation
Indices: 73219005--73219113 Score: 150
Period size: 47 Copynumber: 2.3 Consensus size: 46
73218995 TGCACACTTT
* *
73219005 TCACAATTGGTCATTCGGCCTTATCACATAT-TCACTTACACATAT-A
1 TCAC-ATTGGCCATTCGGCCTTATCACATATAACACTTACACAT-TCA
*
73219051 TCACATTGGCCATTCGGCCTTATCACATATACACACTTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATA-ACACTTACACATTCA
73219098 TCACATTGGCCATTCG
1 TCACATTGGCCATTCG
73219114 ATCTTAAGTT
Statistics
Matches: 57, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
45 25 0.44
46 5 0.09
47 27 0.47
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.33
Consensus pattern (46 bp):
TCACATTGGCCATTCGGCCTTATCACATATAACACTTACACATTCA
Found at i:73221703 original size:22 final size:20
Alignment explanation
Indices: 73221663--73221703 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
73221653 AGTCCTATTA
*
73221663 ACTAAATTCACATGCAATTG
1 ACTAAATTCACATGAAATTG
73221683 ACTAAATTCAAACATGAAATT
1 ACTAAATTC--ACATGAAATT
73221704 TTCACACATG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
22 9 0.50
ACGTcount: A:0.46, C:0.17, G:0.07, T:0.29
Consensus pattern (20 bp):
ACTAAATTCACATGAAATTG
Found at i:73237693 original size:43 final size:43
Alignment explanation
Indices: 73237646--73237766 Score: 111
Period size: 44 Copynumber: 2.8 Consensus size: 43
73237636 TCTAGTATGT
73237646 GATTTCATGTAAGACCATGTCTGGGACATTGGCAACAAT-TTGA
1 GATTTCATGTAAGACCATGTCTGGGACATTGGCAACAATATT-A
* * ** * * * *
73237689 GATTTACGTGTAAGACCCTGTCCAGGACAGTGGCATCGATATTC
1 GATTT-CATGTAAGACCATGTCTGGGACATTGGCAACAATATTA
* *
73237733 GATTAT-ATGTAAGACCACGTCTGGGACGTTGGCA
1 GATT-TCATGTAAGACCATGTCTGGGACATTGGCA
73237767 CTGTACAATC
Statistics
Matches: 60, Mismatches: 15, Indels: 6
0.74 0.19 0.07
Matches are distributed among these distances:
43 26 0.43
44 31 0.52
45 3 0.05
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (43 bp):
GATTTCATGTAAGACCATGTCTGGGACATTGGCAACAATATTA
Found at i:73239978 original size:17 final size:17
Alignment explanation
Indices: 73239956--73239988 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
73239946 CTCAAAGGGT
73239956 AGTGCATCTGATTCTAG
1 AGTGCATCTGATTCTAG
73239973 AGTGCATCTGATTCTA
1 AGTGCATCTGATTCTA
73239989 CACCTATTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.24, C:0.18, G:0.21, T:0.36
Consensus pattern (17 bp):
AGTGCATCTGATTCTAG
Found at i:73240995 original size:25 final size:27
Alignment explanation
Indices: 73240943--73240996 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
73240933 ATTCAACACC
* *
73240943 TAGGGGTATTTTGGTCATTTTTTCCCT
1 TAGGGGTATTTCGATCATTTTTTCCCT
73240970 TAGGGGTATTTCGAT-A-TTTTTCCCT
1 TAGGGGTATTTCGATCATTTTTTCCCT
73240995 TA
1 TA
73240997 ATTATGGTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 11 0.44
26 1 0.04
27 13 0.52
ACGTcount: A:0.15, C:0.15, G:0.20, T:0.50
Consensus pattern (27 bp):
TAGGGGTATTTCGATCATTTTTTCCCT
Found at i:73241311 original size:28 final size:29
Alignment explanation
Indices: 73241279--73241393 Score: 128
Period size: 29 Copynumber: 4.0 Consensus size: 29
73241269 TACCTGTATC
* *
73241279 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
*
73241307 TGGCCCATTAGGCCCAAATCACCTGT-ATA
1 TGGCCCATTAGGCCCAAATCACAT-TCATA
* *
73241336 TGACCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
* * *
73241365 TGGCTCGTTAGGCCC-AGTCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
73241393 T
1 T
73241394 TTATGCTCAC
Statistics
Matches: 74, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
28 27 0.36
29 46 0.62
30 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.28
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:73241343 original size:57 final size:58
Alignment explanation
Indices: 73241270--73241380 Score: 152
Period size: 58 Copynumber: 1.9 Consensus size: 58
73241260 AAATTCACAT
* * *
73241270 ACCTGTATCTGGCCCATTAAGCCC-AATCATATTCATATGGCCCATTAGGCCCAAATC
1 ACCTGTATATGACCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCAAATC
* * * *
73241327 ACCTGTATATGACCCATTAGGCCCAAATCACATTTATATGGCTCGTTAGGCCCA
1 ACCTGTATATGACCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCA
73241381 GTCACATTCA
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 21 0.46
58 25 0.54
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.27
Consensus pattern (58 bp):
ACCTGTATATGACCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCAAATC
Found at i:73244708 original size:17 final size:18
Alignment explanation
Indices: 73244686--73244719 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
73244676 CATATTGAAG
73244686 TGTTTT-AGTGAAAACCT
1 TGTTTTCAGTGAAAACCT
*
73244703 TGTTTTCATTGAAAACC
1 TGTTTTCAGTGAAAACC
73244720 CCTCCTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.41
Consensus pattern (18 bp):
TGTTTTCAGTGAAAACCT
Found at i:73245842 original size:28 final size:29
Alignment explanation
Indices: 73245808--73245922 Score: 119
Period size: 29 Copynumber: 4.0 Consensus size: 29
73245798 TACTTATATC
* *
73245808 TGGCCCATTAAGCCT-AATCATATTCATA
1 TGGCCCATTAGGCCTAAATCACATTCATA
* * *
73245836 TAGCCCACTAGGCCTAAATCACCTAT-ATA
1 TGGCCCATTAGGCCTAAATCACAT-TCATA
*
73245865 TGGCCCATTAGGCCTAAATCACATTTATA
1 TGGCCCATTAGGCCTAAATCACATTCATA
* * *
73245894 TGGCCCGTTAGGCC-CAGTCACATTCATA
1 TGGCCCATTAGGCCTAAATCACATTCATA
73245922 T
1 T
73245923 TTATGCTCAC
Statistics
Matches: 72, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
28 25 0.35
29 46 0.64
30 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
TGGCCCATTAGGCCTAAATCACATTCATA
Found at i:73245893 original size:29 final size:29
Alignment explanation
Indices: 73245808--73245907 Score: 121
Period size: 29 Copynumber: 3.5 Consensus size: 29
73245798 TACTTATATC
* * *
73245808 TGGCCCATTAAGCCT-AATCATATTCATA
1 TGGCCCATTAGGCCTAAATCACATTTATA
* * * *
73245836 TAGCCCACTAGGCCTAAATCACCTATATA
1 TGGCCCATTAGGCCTAAATCACATTTATA
73245865 TGGCCCATTAGGCCTAAATCACATTTATA
1 TGGCCCATTAGGCCTAAATCACATTTATA
*
73245894 TGGCCCGTTAGGCC
1 TGGCCCATTAGGCC
73245908 CAGTCACATT
Statistics
Matches: 59, Mismatches: 12, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
28 12 0.20
29 47 0.80
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (29 bp):
TGGCCCATTAGGCCTAAATCACATTTATA
Found at i:73251407 original size:41 final size:40
Alignment explanation
Indices: 73251336--73251469 Score: 153
Period size: 41 Copynumber: 3.3 Consensus size: 40
73251326 AACACAGAGC
* *
73251336 ATAGCAGCGTTTTTGGTAAAACGCCGCTAAAAATAGAGAA
1 ATAGCAGCGTTTTTGTTAAAACACCGCTAAAAATAGAGAA
* * * *
73251376 ATAGCGGTGTTTTGTGTTAAAACACCGCTAAAAACAGAGCA
1 ATAGCAGCGTTTT-TGTTAAAACACCGCTAAAAATAGAGAA
* * * *
73251417 ATAGCAGCATTTTTTGTTAAAACAACGCTAAAAATA-TGTA
1 ATAGCAGC-GTTTTTGTTAAAACACCGCTAAAAATAGAGAA
73251457 ATAGCAGCGTTTT
1 ATAGCAGCGTTTT
73251470 ACCAAAAAAG
Statistics
Matches: 78, Mismatches: 14, Indels: 5
0.80 0.14 0.05
Matches are distributed among these distances:
39 4 0.05
40 21 0.27
41 49 0.63
42 4 0.05
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.28
Consensus pattern (40 bp):
ATAGCAGCGTTTTTGTTAAAACACCGCTAAAAATAGAGAA
Found at i:73251609 original size:40 final size:41
Alignment explanation
Indices: 73251482--73251610 Score: 179
Period size: 41 Copynumber: 3.2 Consensus size: 41
73251472 CAAAAAAGCT
* * *
73251482 GCTAAAAACCAAAGAATTAGCGGCGCTTTCTGTAAAACGCT
1 GCTAAAAACCAGAGCATTAGCGGCGCTTTCTGTAAAACGCC
* *
73251523 GCTAAAAACCAGAGCATTAGGGGTGCTTTCTGTAAAACGCC
1 GCTAAAAACCAGAGCATTAGCGGCGCTTTCTGTAAAACGCC
* * *
73251564 ACTAAAAACCAGAGCA-TAGCGGCGCTTTCGGTAAAACACC
1 GCTAAAAACCAGAGCATTAGCGGCGCTTTCTGTAAAACGCC
73251604 GCTAAAA
1 GCTAAAA
73251611 GTCATATAAC
Statistics
Matches: 77, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
40 26 0.34
41 51 0.66
ACGTcount: A:0.36, C:0.23, G:0.21, T:0.19
Consensus pattern (41 bp):
GCTAAAAACCAGAGCATTAGCGGCGCTTTCTGTAAAACGCC
Found at i:73251720 original size:22 final size:22
Alignment explanation
Indices: 73251651--73251726 Score: 66
Period size: 22 Copynumber: 3.5 Consensus size: 22
73251641 CAAAAATCAT
**
73251651 AAACACT-AATATATAACCCCTA
1 AAACACTAAATA-ATAACCTTTA
* * *
73251673 AAACACTAAACCACTAAACTTT-
1 AAACACTAAA-TAATAACCTTTA
73251695 AAACACTAAATAATAACCTTTA
1 AAACACTAAATAATAACCTTTA
*
73251717 AAACCCTAAA
1 AAACACTAAA
73251727 CCCCAAAAAA
Statistics
Matches: 42, Mismatches: 9, Indels: 6
0.74 0.16 0.11
Matches are distributed among these distances:
21 8 0.19
22 26 0.62
23 7 0.17
24 1 0.02
ACGTcount: A:0.53, C:0.25, G:0.00, T:0.22
Consensus pattern (22 bp):
AAACACTAAATAATAACCTTTA
Found at i:73252474 original size:14 final size:14
Alignment explanation
Indices: 73252452--73252498 Score: 58
Period size: 14 Copynumber: 3.2 Consensus size: 14
73252442 TTAATTATCA
*
73252452 TTATAGTTTAGGGT
1 TTATGGTTTAGGGT
73252466 TTATGGTTTAGGCCGT
1 TTATGGTTTAGG--GT
*
73252482 ATATGGTTTAGGGT
1 TTATGGTTTAGGGT
73252496 TTA
1 TTA
73252499 AAGTGTATGA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
14 15 0.54
16 13 0.46
ACGTcount: A:0.19, C:0.04, G:0.30, T:0.47
Consensus pattern (14 bp):
TTATGGTTTAGGGT
Found at i:73252727 original size:14 final size:14
Alignment explanation
Indices: 73252701--73252819 Score: 50
Period size: 14 Copynumber: 8.3 Consensus size: 14
73252691 TATCATTAGA
73252701 GTTTATGGG-TTATG
1 GTTTA-GGGTTTATG
73252715 GTTTAGGGTTTAT-
1 GTTTAGGGTTTATG
* * **
73252728 ATATA--GTTTACA
1 GTTTAGGGTTTATG
*
73252740 GTTTAGGGCTTA-G
1 GTTTAGGGTTTATG
73252753 AGTTTAGGGTTTATG
1 -GTTTAGGGTTTATG
*
73252768 GTTTATAGTCTGAGGTTATG
1 G-TT-TAG---G-GTTTATG
* *
73252788 GTTTGGGGTTTAGG
1 GTTTAGGGTTTATG
*
73252802 GTTTGGGGTTTATG
1 GTTTAGGGTTTATG
73252816 GTTT
1 GTTT
73252820 GGGATTTGGA
Statistics
Matches: 80, Mismatches: 13, Indels: 24
0.68 0.11 0.21
Matches are distributed among these distances:
11 5 0.06
12 3 0.04
13 6 0.08
14 47 0.59
15 4 0.05
16 3 0.04
18 2 0.03
19 3 0.04
20 7 0.09
ACGTcount: A:0.17, C:0.03, G:0.34, T:0.47
Consensus pattern (14 bp):
GTTTAGGGTTTATG
Found at i:73252820 original size:14 final size:14
Alignment explanation
Indices: 73252783--73252822 Score: 71
Period size: 14 Copynumber: 2.9 Consensus size: 14
73252773 TAGTCTGAGG
73252783 TTATGGTTTGGGGT
1 TTATGGTTTGGGGT
*
73252797 TTAGGGTTTGGGGT
1 TTATGGTTTGGGGT
73252811 TTATGGTTTGGG
1 TTATGGTTTGGG
73252823 ATTTGGAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.07, C:0.00, G:0.45, T:0.47
Consensus pattern (14 bp):
TTATGGTTTGGGGT
Found at i:73252855 original size:14 final size:14
Alignment explanation
Indices: 73252787--73252860 Score: 69
Period size: 14 Copynumber: 5.2 Consensus size: 14
73252777 CTGAGGTTAT
73252787 GGTTTGGGGTTTAG
1 GGTTTGGGGTTTAG
*
73252801 GGTTTGGGGTTTAT
1 GGTTTGGGGTTTAG
*
73252815 GGTTTGGGATTT-G
1 GGTTTGGGGTTTAG
* **
73252828 GAATTTGGAATTTAG
1 G-GTTTGGGGTTTAG
*
73252843 GGTTAGGGGTTTAAG
1 GGTTTGGGGTTT-AG
73252858 GGT
1 GGT
73252861 AAATATGGTG
Statistics
Matches: 48, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
13 1 0.02
14 40 0.83
15 7 0.15
ACGTcount: A:0.15, C:0.00, G:0.43, T:0.42
Consensus pattern (14 bp):
GGTTTGGGGTTTAG
Done.