Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 213 of 295
Found at i:73253154 original size:7 final size:7
Alignment explanation
Indices: 73253133--73253237 Score: 52
Period size: 7 Copynumber: 14.7 Consensus size: 7
73253123 CTAATTATCA
*
73253133 TTATAGT
1 TTATGGT
*
73253140 TTAAGGT
1 TTATGGT
73253147 TTATGGT
1 TTATGGT
*
73253154 TTAGGGT
1 TTATGGT
*
73253161 ATATGGT
1 TTATGGT
*
73253168 TTAGGGT
1 TTATGGT
**
73253175 TTAAAGT
1 TTATGGT
*
73253182 GTATGAGT
1 TTATG-GT
73253190 TACTAT--T
1 T--TATGGT
*
73253197 TTAAGGT
1 TTATGGT
*
73253204 TTATGGA
1 TTATGGT
73253211 TTATGGGT
1 TTAT-GGT
*
73253219 TTAGGGT
1 TTATGGT
73253226 TTATGGT
1 TTATGGT
*
73253233 GTATG
1 TTATG
73253238 ACTTAAGGGT
Statistics
Matches: 71, Mismatches: 21, Indels: 12
0.68 0.20 0.12
Matches are distributed among these distances:
5 2 0.03
7 59 0.83
8 7 0.10
10 3 0.04
ACGTcount: A:0.23, C:0.01, G:0.30, T:0.47
Consensus pattern (7 bp):
TTATGGT
Found at i:73253155 original size:14 final size:14
Alignment explanation
Indices: 73253133--73253177 Score: 63
Period size: 14 Copynumber: 3.2 Consensus size: 14
73253123 CTAATTATCA
* *
73253133 TTATAGTTTAAGGT
1 TTATGGTTTAGGGT
73253147 TTATGGTTTAGGGT
1 TTATGGTTTAGGGT
*
73253161 ATATGGTTTAGGGT
1 TTATGGTTTAGGGT
73253175 TTA
1 TTA
73253178 AAGTGTATGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.22, C:0.00, G:0.29, T:0.49
Consensus pattern (14 bp):
TTATGGTTTAGGGT
Found at i:73253852 original size:114 final size:115
Alignment explanation
Indices: 73253703--73254232 Score: 493
Period size: 114 Copynumber: 4.6 Consensus size: 115
73253693 GACATCGTTT
* * * * *
73253703 TTTTTTTGGATTTTTAGTGGCATTTTAGGTTAAAACGTCGCAATAGGTTTG-ATTTAGCGGCGCA
1 TTTTTATGGATTTTTAGTGGCGTTTTAGGTTAAAACGCCGCAATAGGTTTGCCTTTAGCGGCGCT
**
73253767 AGGTTATAAACACCACTAATGGTTATTTTGTTTATATCAAAACGGTGTAG
66 AGGGGATAAACACCACTAATGGTTATTTTGTTTATATCAAAACGGTGTAG
* * * * *
73253817 TTTTTATCGATTTTTAGTGGCGTTTTTGGTTAAAACGCCACAATAGGTTAG-ATTTAGCGGCGCT
1 TTTTTATGGATTTTTAGTGGCGTTTTAGGTTAAAACGCCGCAATAGGTTTGCCTTTAGCGGCGCT
* * *
73253881 AGGGTATAAACGCCACTAATGGTTATTTTGTTTATATCAAAACGATGTAG
66 AGGGGATAAACACCACTAATGGTTATTTTGTTTATATCAAAACGGTGTAG
* * *
73253931 -TTTTATTGGATTCTTAGTGGCGTTTTAGGGTAAAATGCCGCAATA-GTTTCGCCTTTAGCGGCG
1 TTTTTA-TGGATTTTTAGTGGCGTTTTAGGTTAAAACGCCGCAATAGGTTT-GCCTTTAGCGGCG
* * * * * * **
73253994 CTTGGAGATAAA-ATGCCACTAAAT-GTTATTCTGTTTATATGAAAATGCCGTCATTTT
64 CTAGGGGATAAACA--CCACT-AATGGTTATTTTGTTTATATCAAAA--CGGT--GTAG
* * * * * *
73254051 TTTTTTTGGATTTTTAGTGGCATTTTAGGGTT-AAACGCGGCAATTGATTTGCCTTTAGCGGTGC
1 TTTTTATGGATTTTTAGTGGCGTTTTA-GGTTAAAACGCCGCAATAGGTTTGCCTTTAGCGGCGC
* ** * * * ** *
73254115 TAGGGGAAAAATGCCACTAAAGTTTATTTTGTTTATATCAAAATGGCATTG
65 TAGGGGATAAACACCACTAATGGTTATTTTGTTTATATCAAAACGGTGTAG
* * * *
73254166 TTTTGT-TTGATTTTTAGTGGCG-TTTATGTTAAAACGCCGCAATTGGTTTGCCTTTAGCGGCGT
1 TTTT-TATGGATTTTTAGTGGCGTTTTAGGTTAAAACGCCGCAATAGGTTTGCCTTTAGCGGCGC
73254229 TAGG
65 TAGG
73254233 AGAAAACGTG
Statistics
Matches: 340, Mismatches: 59, Indels: 34
0.79 0.14 0.08
Matches are distributed among these distances:
113 11 0.03
114 173 0.51
115 39 0.11
116 25 0.07
117 4 0.01
118 4 0.01
119 23 0.07
120 51 0.15
121 10 0.03
ACGTcount: A:0.25, C:0.13, G:0.23, T:0.39
Consensus pattern (115 bp):
TTTTTATGGATTTTTAGTGGCGTTTTAGGTTAAAACGCCGCAATAGGTTTGCCTTTAGCGGCGCT
AGGGGATAAACACCACTAATGGTTATTTTGTTTATATCAAAACGGTGTAG
Found at i:73254414 original size:60 final size:60
Alignment explanation
Indices: 73254325--73254447 Score: 160
Period size: 60 Copynumber: 2.0 Consensus size: 60
73254315 ATTTTCCCCC
* * **
73254325 TTCTCTCTGGTTTATTTCCCCCATTTTCCCTTCTCT-AAATCCCTAAAATAATCA-CCCTT
1 TTCTCCCTAGTTTATTTCCCCCATTTTCCCTAATCTGAAA-CCCTAAAATAATCACCCCTT
* *
73254384 TTCTCCCTAGTTTATTTGCCCCCATTTTCCCTAATTTGAAACCCTAAAATAATTACCCCTT
1 TTCTCCCTAGTTTATTT-CCCCCATTTTCCCTAATCTGAAACCCTAAAATAATCACCCCTT
73254445 TTC
1 TTC
73254448 CCCAATTCGA
Statistics
Matches: 55, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
59 15 0.27
60 29 0.53
61 11 0.20
ACGTcount: A:0.22, C:0.33, G:0.04, T:0.41
Consensus pattern (60 bp):
TTCTCCCTAGTTTATTTCCCCCATTTTCCCTAATCTGAAACCCTAAAATAATCACCCCTT
Found at i:73256749 original size:10 final size:9
Alignment explanation
Indices: 73256736--73256782 Score: 51
Period size: 10 Copynumber: 5.0 Consensus size: 9
73256726 CTTATATTTC
73256736 ATTTATCAAT
1 ATTT-TCAAT
*
73256746 ATTTTAAAT
1 ATTTTCAAT
73256755 ATATTTCAAT
1 AT-TTTCAAT
73256765 A-TTTCAAT
1 ATTTTCAAT
73256773 ATTTATCAAT
1 ATTT-TCAAT
73256783 TAATATAATT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
8 8 0.25
9 8 0.25
10 16 0.50
ACGTcount: A:0.40, C:0.09, G:0.00, T:0.51
Consensus pattern (9 bp):
ATTTTCAAT
Found at i:73257002 original size:15 final size:15
Alignment explanation
Indices: 73256982--73257010 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
73256972 AGGACATATA
73256982 TATTTTGGATTAATT
1 TATTTTGGATTAATT
73256997 TATTTTGGATTAAT
1 TATTTTGGATTAAT
73257011 CAGGACACAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.14, T:0.59
Consensus pattern (15 bp):
TATTTTGGATTAATT
Found at i:73257033 original size:25 final size:24
Alignment explanation
Indices: 73257005--73257078 Score: 59
Period size: 21 Copynumber: 3.2 Consensus size: 24
73256995 TTTATTTTGG
73257005 ATTAATCAGGACACAATTTTTTTAA
1 ATTAATCA-GACACAATTTTTTTAA
**
73257030 ATT-A-C-GACAC-ATATTTTGCAA
1 ATTAATCAGACACAAT-TTTTTTAA
*
73257051 TTTAATCACGACACAA-TTTTTTAA
1 ATTAATCA-GACACAATTTTTTTAA
73257075 ATTA
1 ATTA
73257079 CATATTTTGG
Statistics
Matches: 37, Mismatches: 6, Indels: 13
0.66 0.11 0.23
Matches are distributed among these distances:
20 2 0.05
21 13 0.35
22 1 0.03
23 2 0.05
24 10 0.27
25 8 0.22
26 1 0.03
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (24 bp):
ATTAATCAGACACAATTTTTTTAA
Found at i:73257186 original size:9 final size:9
Alignment explanation
Indices: 73257174--73257397 Score: 74
Period size: 9 Copynumber: 25.0 Consensus size: 9
73257164 ATATCATATA
73257174 ATAACTTAC
1 ATAACTTAC
73257183 ATAACTTAC
1 ATAACTTAC
*
73257192 AAAACTTAC
1 ATAACTTAC
73257201 ATAA--TAC
1 ATAACTTAC
* *
73257208 ATAA-ATAT
1 ATAACTTAC
* *
73257216 ATATCATATC
1 ATAACTTA-C
73257226 ATAACTTAC
1 ATAACTTAC
*
73257235 ACAACTTAC
1 ATAACTTAC
*
73257244 ATAA-TACTCC
1 ATAACT--TAC
*
73257254 A-AATATATATC
1 ATAA-CT-TA-C
* *
73257265 ATAA-ATAT
1 ATAACTTAC
*
73257273 ATATCTTATC
1 ATAACTTA-C
*
73257283 ATTACTTAC
1 ATAACTTAC
*
73257292 ACAACTTAC
1 ATAACTTAC
73257301 ATAA--TAC
1 ATAACTTAC
* *
73257308 ATAA-ATAT
1 ATAACTTAC
* *
73257316 ATATCATATC
1 ATAACTTA-C
73257326 ATAACTTAC
1 ATAACTTAC
*
73257335 ATACCTTAC
1 ATAACTTAC
* *
73257344 ATAAATGTAT
1 ATAACT-TAC
* *
73257354 ATCA-TAAC
1 ATAACTTAC
73257362 ATAACTTAC
1 ATAACTTAC
73257371 ATAACTTAC
1 ATAACTTAC
73257380 A-AAGCTTAC
1 ATAA-CTTAC
*
73257389 TTAACTTAC
1 ATAACTTAC
73257398 GTAATACATA
Statistics
Matches: 160, Mismatches: 37, Indels: 36
0.69 0.16 0.15
Matches are distributed among these distances:
7 14 0.09
8 20 0.12
9 92 0.57
10 29 0.18
11 3 0.02
12 2 0.01
ACGTcount: A:0.46, C:0.19, G:0.01, T:0.34
Consensus pattern (9 bp):
ATAACTTAC
Found at i:73257230 original size:43 final size:43
Alignment explanation
Indices: 73257182--73257347 Score: 163
Period size: 43 Copynumber: 3.5 Consensus size: 43
73257172 TAATAACTTA
*
73257182 CATAACTTACAAAACTTACATAATACATAAATATATATCATAT
1 CATAACTTACACAACTTACATAATACATAAATATATATCATAT
73257225 CATAACTTACACAACTTACATAATAC-TCCAAATATATATCATAAATATATAT
1 CATAACTTACACAACTTACATAATACAT--AAATATATATC--------ATAT
73257277 CTTATCATTACTTACACAACTTACATAATACATAAATATATATCATAT
1 C--AT-A--ACTTACACAACTTACATAATACATAAATATATATCATAT
* *
73257325 CATAACTTACATACCTTACATAA
1 CATAACTTACACAACTTACATAA
73257348 ATGTATATCA
Statistics
Matches: 104, Mismatches: 3, Indels: 32
0.75 0.02 0.23
Matches are distributed among these distances:
42 1 0.01
43 42 0.40
44 11 0.11
45 1 0.01
46 2 0.02
48 5 0.05
52 5 0.05
54 2 0.02
55 1 0.01
56 11 0.11
57 22 0.21
58 1 0.01
ACGTcount: A:0.47, C:0.19, G:0.00, T:0.34
Consensus pattern (43 bp):
CATAACTTACACAACTTACATAATACATAAATATATATCATAT
Found at i:73257292 original size:100 final size:96
Alignment explanation
Indices: 73257161--73257347 Score: 293
Period size: 100 Copynumber: 1.9 Consensus size: 96
73257151 TAATGTTTAT
73257161 TATATATCATATAATAACTTACATAACTTACAAAACTTACATAATACATAAATATATATCATATC
1 TATATATCATATAATAACTTACATAACTTACAAAACTTACATAATACATAAATATATATCATATC
73257226 ATAACTTACACAACTTACATAATACTCCAAA
66 ATAACTTACACAACTTACATAATACTCCAAA
* * *
73257257 TATATATCATAAATATATATCTTATCATTACTTACACAACTTACATAATACATAAATATATATCA
1 TATATATCAT--ATA-ATAACTTA-CATAACTTACAAAACTTACATAATACATAAATATATATCA
* *
73257322 TATCATAACTTACATACCTTACATAA
62 TATCATAACTTACACAACTTACATAA
73257348 ATGTATATCA
Statistics
Matches: 82, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
96 10 0.12
98 3 0.04
99 7 0.09
100 62 0.76
ACGTcount: A:0.47, C:0.18, G:0.00, T:0.35
Consensus pattern (96 bp):
TATATATCATATAATAACTTACATAACTTACAAAACTTACATAATACATAAATATATATCATATC
ATAACTTACACAACTTACATAATACTCCAAA
Found at i:73257346 original size:36 final size:36
Alignment explanation
Indices: 73257294--73257380 Score: 133
Period size: 36 Copynumber: 2.5 Consensus size: 36
73257284 TTACTTACAC
*
73257294 AACTTACATAA--TACATAAATATATATCATATCAT
1 AACTTACATAACTTACATAAATATATATCATAACAT
* *
73257328 AACTTACATACCTTACATAAATGTATATCATAACAT
1 AACTTACATAACTTACATAAATATATATCATAACAT
73257364 AACTTACATAACTTACA
1 AACTTACATAACTTACA
73257381 AAGCTTACTT
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
34 10 0.21
36 37 0.79
ACGTcount: A:0.47, C:0.18, G:0.01, T:0.33
Consensus pattern (36 bp):
AACTTACATAACTTACATAAATATATATCATAACAT
Found at i:73262993 original size:11 final size:11
Alignment explanation
Indices: 73262977--73263013 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
73262967 ATGATTTGAA
73262977 ATGATATGCAC
1 ATGATATGCAC
*
73262988 ATGATATG--T
1 ATGATATGCAC
73262997 ATGATATGCAC
1 ATGATATGCAC
73263008 ATGATA
1 ATGATA
73263014 AACTCATATA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
9 8 0.36
11 14 0.64
ACGTcount: A:0.38, C:0.11, G:0.19, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:73270837 original size:11 final size:11
Alignment explanation
Indices: 73270821--73270879 Score: 72
Period size: 11 Copynumber: 5.7 Consensus size: 11
73270811 ACATGACTTG
73270821 ACATGATATGC
1 ACATGATATGC
73270832 ACATGATATG-
1 ACATGATATGC
*
73270842 -TATGATATGC
1 ACATGATATGC
73270852 ACATGATATG-
1 ACATGATATGC
*
73270862 -TATGATATGC
1 ACATGATATGC
73270872 ACATGATA
1 ACATGATA
73270880 AACTCATATA
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
9 16 0.40
11 24 0.60
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.32
Consensus pattern (11 bp):
ACATGATATGC
Found at i:73270848 original size:20 final size:20
Alignment explanation
Indices: 73270823--73270879 Score: 114
Period size: 20 Copynumber: 2.9 Consensus size: 20
73270813 ATGACTTGAC
73270823 ATGATATGCACATGATATGT
1 ATGATATGCACATGATATGT
73270843 ATGATATGCACATGATATGT
1 ATGATATGCACATGATATGT
73270863 ATGATATGCACATGATA
1 ATGATATGCACATGATA
73270880 AACTCATATA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.37, C:0.11, G:0.19, T:0.33
Consensus pattern (20 bp):
ATGATATGCACATGATATGT
Found at i:73270984 original size:24 final size:24
Alignment explanation
Indices: 73270927--73271007 Score: 92
Period size: 25 Copynumber: 3.2 Consensus size: 24
73270917 GAGGAAGTGC
73270927 AAAAGGGCTTTGCCCCAGTTTATTG
1 AAAAGGGCTTTGCCCCAG-TTATTG
73270952 AAAAGGGCTTTGCCCCAGTTATT-
1 AAAAGGGCTTTGCCCCAGTTATTG
**
73270975 AAAAGAGGCTAGGCCTCCAGTTATGTG
1 AAAAG-GGCTTTGCC-CCAGTTAT-TG
*
73271002 ATAAGG
1 AAAAGG
73271008 CAGCTATGCT
Statistics
Matches: 49, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
23 5 0.10
24 12 0.24
25 26 0.53
26 2 0.04
27 4 0.08
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTATTG
Found at i:73271237 original size:31 final size:31
Alignment explanation
Indices: 73271191--73271260 Score: 86
Period size: 31 Copynumber: 2.3 Consensus size: 31
73271181 TGTTTACAGT
* * *
73271191 AAAGTCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGACCCAGTGATATGATTAATGA
* * *
73271222 AATGGCTTCGACCCAGTGGTTTGATTAATGA
1 AAAGGCTTCGACCCAGTGATATGATTAATGA
73271253 AAAGGCTT
1 AAAGGCTT
73271261 TAGCCCAGTA
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (31 bp):
AAAGGCTTCGACCCAGTGATATGATTAATGA
Found at i:73271268 original size:31 final size:30
Alignment explanation
Indices: 73271201--73271269 Score: 75
Period size: 31 Copynumber: 2.2 Consensus size: 30
73271191 AAAGTCTTCG
* * *
73271201 GCCCAGTGATATGATTTATGAAATGGCTTC
1 GCCCAGTGATATGATTAATGAAAAGGCTTA
* *
73271231 GACCCAGTGGTTTGATTAATGAAAAGGCTTTA
1 G-CCCAGTGATATGATTAATGAAAAGGC-TTA
73271263 GCCCAGT
1 GCCCAGT
73271270 AACCGTTAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
30 1 0.03
31 28 0.88
32 3 0.09
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (30 bp):
GCCCAGTGATATGATTAATGAAAAGGCTTA
Found at i:73273820 original size:21 final size:21
Alignment explanation
Indices: 73273768--73273822 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 21
73273758 ACTTAGAGCG
* *
73273768 GAGGCAGCAGAGAGGGAGGCA
1 GAGGCAGCAGCGAGAGAGGCA
*
73273789 GCGGCAGCAGCGAGAGAGGCA
1 GAGGCAGCAGCGAGAGAGGCA
73273810 GAGGCAGCAGCGA
1 GAGGCAGCAGCGA
73273823 TGGCAGTTGA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.31, C:0.20, G:0.49, T:0.00
Consensus pattern (21 bp):
GAGGCAGCAGCGAGAGAGGCA
Found at i:73280857 original size:42 final size:43
Alignment explanation
Indices: 73280763--73280870 Score: 121
Period size: 42 Copynumber: 2.5 Consensus size: 43
73280753 TACAATACCG
* * * *
73280763 ATGTCCTAGACATGGTCTTACATGTAATTCAGTATCGATGCCT
1 ATGTCCCAGACATGGTCTTACACGTAAATCAGTATCGATGCCA
* * *
73280806 CTCTCCCAGACAGGGTCTTACACG-AAATCAG-ATACGATGCCA
1 ATGTCCCAGACATGGTCTTACACGTAAATCAGTAT-CGATGCCA
*
73280848 ATGTCCCAGACATGATCTTACAC
1 ATGTCCCAGACATGGTCTTACAC
73280871 AATATCTCAG
Statistics
Matches: 53, Mismatches: 11, Indels: 3
0.79 0.16 0.04
Matches are distributed among these distances:
41 2 0.04
42 32 0.60
43 19 0.36
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.27
Consensus pattern (43 bp):
ATGTCCCAGACATGGTCTTACACGTAAATCAGTATCGATGCCA
Found at i:73283110 original size:15 final size:15
Alignment explanation
Indices: 73283090--73283118 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
73283080 GTGAGAAATG
73283090 TCACATTTATTGCGA
1 TCACATTTATTGCGA
73283105 TCACATTTATTGCG
1 TCACATTTATTGCG
73283119 TTGAAAGTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.24, C:0.21, G:0.14, T:0.41
Consensus pattern (15 bp):
TCACATTTATTGCGA
Found at i:73287376 original size:46 final size:44
Alignment explanation
Indices: 73287322--73287498 Score: 185
Period size: 46 Copynumber: 3.9 Consensus size: 44
73287312 ATATTTGGGT
*
73287322 ATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
*** *
73287366 ATGTCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GA
1 A--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGA
* * *
73287415 ATCCGAGCTCGTTGAGTTAAGTCCGAGTTAACTTATGGATGCGA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
* *
73287459 ACACTCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 A-TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
73287499 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 15, Indels: 16
0.78 0.11 0.11
Matches are distributed among these distances:
43 1 0.01
44 5 0.05
45 2 0.02
46 65 0.60
47 30 0.28
48 1 0.01
49 4 0.04
50 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.29
Consensus pattern (44 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
Found at i:73287481 original size:93 final size:93
Alignment explanation
Indices: 73287322--73287490 Score: 259
Period size: 93 Copynumber: 1.8 Consensus size: 93
73287312 ATATTTGGGT
* * * **
73287322 ATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTTG
1 ATCCGAACTCGTTGAGTTAAGTCCGAGTTAACTTATGGATGCGAAACTCCGAACTCGTTGAGTTG
73287387 AGTCCGAGTTCGAGAGATGTAACTAGGA
66 AGTCCGAGTTCGAGAGATGTAACTAGGA
* *
73287415 ATCCGAGCTCGTTGAGTTAAGTCCGAGTTAACTTATGGATGCGAACACT-CGAGCTCGTTGAGTT
1 ATCCGAACTCGTTGAGTTAAGTCCGAGTTAACTTATGGATGCGAA-ACTCCGAACTCGTTGAGTT
73287479 GAGTCCGAGTTC
65 GAGTCCGAGTTC
73287491 ACTTATGGGC
Statistics
Matches: 68, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
93 67 0.99
94 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.29
Consensus pattern (93 bp):
ATCCGAACTCGTTGAGTTAAGTCCGAGTTAACTTATGGATGCGAAACTCCGAACTCGTTGAGTTG
AGTCCGAGTTCGAGAGATGTAACTAGGA
Found at i:73288512 original size:38 final size:38
Alignment explanation
Indices: 73288469--73288544 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
73288459 TTCATCCTTT
*
73288469 TTCATTTCTTTTGGCCGAAAATTCTAAGGAATGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
73288507 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
73288545 GGAGTTCTTG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.32, C:0.13, G:0.22, T:0.33
Consensus pattern (38 bp):
TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
Found at i:73289827 original size:40 final size:40
Alignment explanation
Indices: 73289733--73289877 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
73289723 TACTCGAATG
*
73289733 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
73289774 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
73289814 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
73289854 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
73289878 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:73296578 original size:38 final size:38
Alignment explanation
Indices: 73296535--73296610 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
73296525 TTCATCCTTT
*
73296535 TTCATTTCTTTTGGCCGAAAATTCTAAGGAATGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
73296573 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
73296611 GGAGTTCTTG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.32, C:0.13, G:0.22, T:0.33
Consensus pattern (38 bp):
TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
Found at i:73303652 original size:20 final size:20
Alignment explanation
Indices: 73303601--73303652 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
73303591 GTGTAATCCC
*
73303601 ACACGCCCATGT-GACTTGGG
1 ACACGCCCGTGTAG-CTTGGG
*
73303621 ACACGCCTGTGTAGCTTGGG
1 ACACGCCCGTGTAGCTTGGG
*
73303641 ACACTCCCGTGT
1 ACACGCCCGTGT
73303653 CCCTAACTCG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
20 26 0.96
21 1 0.04
ACGTcount: A:0.17, C:0.31, G:0.29, T:0.23
Consensus pattern (20 bp):
ACACGCCCGTGTAGCTTGGG
Found at i:73305173 original size:48 final size:47
Alignment explanation
Indices: 73304911--73305177 Score: 186
Period size: 48 Copynumber: 5.6 Consensus size: 47
73304901 ACAAGGTAGG
* * * * *
73304911 TGCCAATGCCATATCCTAGATATGGTCTTACATGGGACCACATAACGA
1 TGCCAAAGCCATATCCCAGACATGGTCTTACATGGGATCACATATC-A
* *
73304959 TG-CAAATGCCATGTCCCAGACATGGTCTTACATGGGATCACACAT-A
1 TGCCAAA-GCCATATCCCAGACATGGTCTTACATGGGATCACATATCA
* * *** * *
73305005 T-CGAAA-CCAATAGCCCAG-CTATGGTCTTACACCATG-TCTCATTATGA
1 TGCCAAAGCC-ATATCCCAGAC-ATGGTCTTACA-TGGGATCACA-TATCA
* * * * **
73305052 TGCCAATGCCATGTCCCAAACATGGTCTTACATGGGGTCACATAAAGA
1 TGCCAAAGCCATATCCCAGACATGGTCTTACATGGGATCACAT-ATCA
* * *
73305100 TGCCAAAGCCATGTACTAGACATGGTCTTACATGGGATCACATATCA
1 TGCCAAAGCCATATCCCAGACATGGTCTTACATGGGATCACATATCA
* * *
73305147 CTGCCGAAGCCATATCCCAAATATGGTCTTA
1 -TGCCAAAGCCATATCCCAGACATGGTCTTA
73305178 TACGGGAGCT
Statistics
Matches: 168, Mismatches: 38, Indels: 26
0.72 0.16 0.11
Matches are distributed among these distances:
44 3 0.02
45 22 0.13
46 8 0.05
47 9 0.05
48 123 0.73
49 3 0.02
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (47 bp):
TGCCAAAGCCATATCCCAGACATGGTCTTACATGGGATCACATATCA
Found at i:73309220 original size:34 final size:34
Alignment explanation
Indices: 73309153--73309227 Score: 107
Period size: 34 Copynumber: 2.2 Consensus size: 34
73309143 TTGCATACCC
*
73309153 ACTGAAATGGGCTAAGGCCCAGACTGCCTCTGTT
1 ACTGAAATGGGCTAAGGCCCAGACTGCATCTGTT
*
73309187 ACTGAAATGGGCTCAGGCCCAGACTG-ATACTGTT
1 ACTGAAATGGGCTAAGGCCCAGACTGCAT-CTGTT
*
73309221 ATTGAAA
1 ACTGAAA
73309228 AAGTGGCTAA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
33 1 0.03
34 36 0.97
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (34 bp):
ACTGAAATGGGCTAAGGCCCAGACTGCATCTGTT
Found at i:73314509 original size:47 final size:47
Alignment explanation
Indices: 73314450--73314871 Score: 683
Period size: 47 Copynumber: 9.1 Consensus size: 47
73314440 GAAATGATAG
73314450 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
73314497 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
73314544 TAAGGCCTAATGGCCGA--TG-TGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
73314588 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
73314635 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT-A
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
73314681 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
73314728 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
* *
73314775 TAAGGCCTAATAGCCGATGTG-TGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
* * * * * * * * **
73314821 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
73314868 TAAG
1 TAAG
73314872 TCCCGAAGGG
Statistics
Matches: 354, Mismatches: 16, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
44 42 0.12
45 2 0.01
46 86 0.24
47 224 0.63
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
Found at i:73314746 original size:93 final size:94
Alignment explanation
Indices: 73314450--73314871 Score: 692
Period size: 93 Copynumber: 4.5 Consensus size: 94
73314440 GAAATGATAG
*
73314450 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
73314515 GTGATGAATGTGAAAGTGTATATGTGTGA
66 GTGATGAATGTGAAAGTGTATATGTGTGA
*
73314544 TAAGGCCTAATGGCCGA--TG-TGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
73314606 GTGATGAATGTGAAAGTGTATATGTGTGA
66 GTGATGAATGTGAAAGTGTATATGTGTGA
73314635 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT-ATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
73314699 GTGATGAATGTGAAAGTGTATATGTGTGA
66 GTGATGAATGTGAAAGTGTATATGTGTGA
*
73314728 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
*
73314793 GTG-TGAATGTGAAAGTGTATATATGTGA
66 GTGATGAATGTGAAAGTGTATATGTGTGA
* * * * * * * * *
73314821 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGATAAG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
73314872 TCCCGAAGGG
Statistics
Matches: 312, Mismatches: 12, Indels: 9
0.94 0.04 0.03
Matches are distributed among these distances:
91 89 0.29
92 2 0.01
93 161 0.52
94 60 0.19
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (94 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATGTGTGA
Found at i:73314784 original size:140 final size:140
Alignment explanation
Indices: 73314450--73314871 Score: 690
Period size: 140 Copynumber: 3.0 Consensus size: 140
73314440 GAAATGATAG
73314450 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGAT
*
73314515 GTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGA-TG-TGAATGTGAAAGTGT
66 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAGTGATGAATGTGAAAGTGT
73314578 ATATGTGTGA
131 ATATGTGTGA
73314588 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGAT
73314653 GTGATGAATGTGAAAGTGTATATATGT-ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
66 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA-GTGATGAATGTGAAAGTG
73314717 TATATGTGTGA
130 TATATGTGTGA
* *
73314728 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGAT
* * * * * *
73314793 GTG-TGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTG
66 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA-GTGATGAATGTGAAAGTG
* **
73314857 CATAAATGTGA
130 TATATGTGTGA
73314868 TAAG
1 TAAG
73314872 TCCCGAAGGG
Statistics
Matches: 267, Mismatches: 13, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
137 18 0.07
138 91 0.34
139 25 0.09
140 133 0.50
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (140 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAGTGATGAATGTGAAAGTGT
ATATGTGTGA
Found at i:73315045 original size:36 final size:37
Alignment explanation
Indices: 73314990--73315067 Score: 122
Period size: 36 Copynumber: 2.1 Consensus size: 37
73314980 CCGAGCTCTA
* *
73314990 AAGACCCGATGACTACGTGTGG-GATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
73315026 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
73315063 AAGAC
1 AAGAC
73315068 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
36 20 0.53
37 18 0.47
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:73319008 original size:19 final size:21
Alignment explanation
Indices: 73318984--73319038 Score: 78
Period size: 22 Copynumber: 2.6 Consensus size: 21
73318974 GTTTCTAATA
73318984 AAATAA-AA-CTTAGTTTTTG
1 AAATAATAATCTTAGTTTTTG
73319003 AAATAATTAATCTTAGTTTTTG
1 AAATAA-TAATCTTAGTTTTTG
73319025 AAATAATTAATCTT
1 AAATAA-TAATCTT
73319039 TATAAATGAA
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
19 6 0.18
21 2 0.06
22 25 0.76
ACGTcount: A:0.42, C:0.05, G:0.07, T:0.45
Consensus pattern (21 bp):
AAATAATAATCTTAGTTTTTG
Found at i:73319017 original size:22 final size:22
Alignment explanation
Indices: 73318992--73319038 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
73318982 TAAAATAAAA
73318992 CTTAGTTTTTGAAATAATTAAT
1 CTTAGTTTTTGAAATAATTAAT
73319014 CTTAGTTTTTGAAATAATTAAT
1 CTTAGTTTTTGAAATAATTAAT
73319036 CTT
1 CTT
73319039 TATAAATGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.34, C:0.06, G:0.09, T:0.51
Consensus pattern (22 bp):
CTTAGTTTTTGAAATAATTAAT
Found at i:73319048 original size:22 final size:22
Alignment explanation
Indices: 73319001--73319050 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
73318991 ACTTAGTTTT
***
73319001 TGAAATAATTAATCTTAGTTTT
1 TGAAATAATTAATCTTAGTAAA
73319023 TGAAATAATTAATCTTTA-TAAA
1 TGAAATAATTAATC-TTAGTAAA
73319045 TGAAAT
1 TGAAAT
73319051 TCTAAAGACA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 21 0.88
23 3 0.12
ACGTcount: A:0.44, C:0.04, G:0.08, T:0.44
Consensus pattern (22 bp):
TGAAATAATTAATCTTAGTAAA
Found at i:73327147 original size:68 final size:67
Alignment explanation
Indices: 73327075--73327224 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
73327065 CATCATGTGT
* * * *
73327075 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
73327137 ATGTAG
62 ATGTAG
** * *
73327143 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
73327208 AG
66 AG
73327210 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
73327225 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:73327180 original size:64 final size:64
Alignment explanation
Indices: 73327099--73327282 Score: 176
Period size: 67 Copynumber: 2.8 Consensus size: 64
73327089 AGACATTATG
* *
73327099 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
73327163 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
73327228 AA
63 AA
** * * * *
73327230 ACTG--GCTAGGTCATATGGGAGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
73327283 CGAACTATAT
Statistics
Matches: 96, Mismatches: 19, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.20
64 21 0.22
65 8 0.08
66 14 0.15
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:73328291 original size:27 final size:27
Alignment explanation
Indices: 73328260--73328319 Score: 120
Period size: 27 Copynumber: 2.2 Consensus size: 27
73328250 GGAAAATAAA
73328260 TATATGTGGAATACATGGAAACTATGG
1 TATATGTGGAATACATGGAAACTATGG
73328287 TATATGTGGAATACATGGAAACTATGG
1 TATATGTGGAATACATGGAAACTATGG
73328314 TATATG
1 TATATG
73328320 AATATTGATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.37, C:0.07, G:0.25, T:0.32
Consensus pattern (27 bp):
TATATGTGGAATACATGGAAACTATGG
Found at i:73332085 original size:24 final size:21
Alignment explanation
Indices: 73332057--73332100 Score: 52
Period size: 24 Copynumber: 2.0 Consensus size: 21
73332047 TTTATTAAGA
73332057 TAAATATTAGATTAAATATAATAT
1 TAAATATT--ATTAAA-ATAATAT
*
73332081 TAAATCTTATTAAAATAATA
1 TAAATATTATTAAAATAATA
73332101 GAATGTTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 6 0.32
22 6 0.32
24 7 0.37
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.41
Consensus pattern (21 bp):
TAAATATTATTAAAATAATAT
Found at i:73332145 original size:62 final size:59
Alignment explanation
Indices: 73332029--73332145 Score: 144
Period size: 62 Copynumber: 1.9 Consensus size: 59
73332019 ATCACTTTAA
* * * *
73332029 TATTAAATTAATATAATATTTATTAAGATAAATATTAGATTAAATATAATATTAAATCT
1 TATTAAAATAATAGAATATTTATTAAGATAAACATTAAATTAAATATAATATTAAATCT
* * *
73332088 TATTAAAATAATAGAATGTTTATATACAAGATAAACATTAAATTTAATTTAATATTAA
1 TATTAAAATAATAGAATATTTAT-T--AAGATAAACATTAAATTAAATATAATATTAA
73332146 GATAATCACT
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
59 20 0.42
60 1 0.02
62 27 0.56
ACGTcount: A:0.51, C:0.03, G:0.04, T:0.42
Consensus pattern (59 bp):
TATTAAAATAATAGAATATTTATTAAGATAAACATTAAATTAAATATAATATTAAATCT
Found at i:73334084 original size:20 final size:19
Alignment explanation
Indices: 73334035--73334088 Score: 63
Period size: 22 Copynumber: 2.6 Consensus size: 19
73334025 ATTTCTAAGC
*
73334035 AGTATCGATACCATCTATG
1 AGTATCGATACCATCAATG
73334054 AGAAATATCGATACCATCGAATG
1 AG---TATCGATACCATC-AATG
73334077 AGTATCGATACC
1 AGTATCGATACC
73334089 TATGTGAAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
19 2 0.07
20 10 0.33
22 13 0.43
23 5 0.17
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.26
Consensus pattern (19 bp):
AGTATCGATACCATCAATG
Found at i:73334313 original size:21 final size:21
Alignment explanation
Indices: 73334289--73334329 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
73334279 TGGTGATGTG
73334289 GCGTCTTGTTACTCGAGCTCC
1 GCGTCTTGTTACTCGAGCTCC
73334310 GCGTCTTGTTACTCGAGCTC
1 GCGTCTTGTTACTCGAGCTC
73334330 GGCGACTGGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.10, C:0.32, G:0.24, T:0.34
Consensus pattern (21 bp):
GCGTCTTGTTACTCGAGCTCC
Found at i:73338791 original size:18 final size:17
Alignment explanation
Indices: 73338741--73338801 Score: 52
Period size: 18 Copynumber: 3.4 Consensus size: 17
73338731 TAAATAAAGG
73338741 TATTGAATAATTGACTGT
1 TATTGAA-AATTGACTGT
* * *
73338759 TACTGCAAGACTGACTGT
1 TATTG-AAAATTGACTGT
73338777 TATTGAACAATTGACCT-T
1 TATTGAA-AATTGA-CTGT
73338795 TATTGAA
1 TATTGAA
73338802 TAATCGATGG
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
17 2 0.06
18 28 0.82
19 4 0.12
ACGTcount: A:0.33, C:0.13, G:0.16, T:0.38
Consensus pattern (17 bp):
TATTGAAAATTGACTGT
Found at i:73345229 original size:14 final size:14
Alignment explanation
Indices: 73345210--73345240 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
73345200 GATAATAGGA
73345210 ATTTTAATCCCTTT
1 ATTTTAATCCCTTT
73345224 ATTTTAATCCCTTT
1 ATTTTAATCCCTTT
73345238 ATT
1 ATT
73345241 ATATGACTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.23, C:0.19, G:0.00, T:0.58
Consensus pattern (14 bp):
ATTTTAATCCCTTT
Found at i:73356486 original size:234 final size:235
Alignment explanation
Indices: 73356076--73356527 Score: 755
Period size: 234 Copynumber: 1.9 Consensus size: 235
73356066 TTGTTAGTTT
* * * *
73356076 CACCACTTTCTTATTGGTGCTTTGGGCCAATTTGACCCTAGAACAGTTGTAAAAAGTGTTGTTGA
1 CACCACTTTCTTATTGGTGCCTTGAGCCAATGTGACCCTAGAACAGTTGTAAAAAATGTTGTTGA
*
73356141 GGTAGAGTTGTTGGAAAAGAGATGTTAGATTGAAAATATCTTAAATAACTAAGAATACTTCTTGT
66 GGTAGAGCTGTTGGAAAAGAGATGTTAGATTGAAAATATCTTAAATAACTAAGAATACTTCTTGT
* *
73356206 CTTCTCAAGTATTTTATGAAGACATTCAATTGTTAATGAAACTCTTTGTCAATACTTTAAGTTTC
131 CTTCTCAAGTATTTTATGAAGACATTCAATTATCAATGAAACTCTTTGTCAATACTTTAAGTTTC
*
73356271 TGCCTTTAACCTTTGGAGACTTTCCTGCTACGTTCCTAGA
196 TGCCTTTAACCTTTAGAGACTTTCCTGCTACGTTCCTAGA
73356311 CACCACTTTCTTATTGGTGCCTTGAGCCAATGTGACCCTAGAACAGTT-TAAAAAATGTTGTTGA
1 CACCACTTTCTTATTGGTGCCTTGAGCCAATGTGACCCTAGAACAGTTGTAAAAAATGTTGTTGA
* * *
73356375 GGTAGAGCTGTTGGAAAAGAGCTGTTAGATTGAAAATATCTTAAAT-AGTGAAGAATACTTGTTG
66 GGTAGAGCTGTTGGAAAAGAGATGTTAGATTGAAAATATCTTAAATAACT-AAGAATACTTCTTG
* * *
73356439 TCTTCTGAAGTATTTTATGAAGACATTCAGTTATCAATGCAACTCTTTGTCAATACTTTAAGTTT
130 TCTTCTCAAGTATTTTATGAAGACATTCAATTATCAATGAAACTCTTTGTCAATACTTTAAGTTT
73356504 CTGCCTTTAACCTTTAGAGACTTT
195 CTGCCTTTAACCTTTAGAGACTTT
73356528 TTTTGGTTTA
Statistics
Matches: 202, Mismatches: 14, Indels: 3
0.92 0.06 0.01
Matches are distributed among these distances:
233 2 0.01
234 155 0.77
235 45 0.22
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.37
Consensus pattern (235 bp):
CACCACTTTCTTATTGGTGCCTTGAGCCAATGTGACCCTAGAACAGTTGTAAAAAATGTTGTTGA
GGTAGAGCTGTTGGAAAAGAGATGTTAGATTGAAAATATCTTAAATAACTAAGAATACTTCTTGT
CTTCTCAAGTATTTTATGAAGACATTCAATTATCAATGAAACTCTTTGTCAATACTTTAAGTTTC
TGCCTTTAACCTTTAGAGACTTTCCTGCTACGTTCCTAGA
Found at i:73363970 original size:16 final size:18
Alignment explanation
Indices: 73363949--73363986 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
73363939 ATTCTTATGG
73363949 ATTTTACT-TT-TATTTT
1 ATTTTACTATTGTATTTT
73363965 ATTTTACTATTGTATTTT
1 ATTTTACTATTGTATTTT
73363983 ATTT
1 ATTT
73363987 AAATAAGAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 8 0.40
17 2 0.10
18 10 0.50
ACGTcount: A:0.21, C:0.05, G:0.03, T:0.71
Consensus pattern (18 bp):
ATTTTACTATTGTATTTT
Found at i:73368752 original size:3 final size:3
Alignment explanation
Indices: 73368744--73368775 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
73368734 ATTCAAAGGC
*
73368744 ATT ATT ATT ATT ATT ATT ATT ATT TTT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
73368776 AGCTTCAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
ATT
Found at i:73371620 original size:26 final size:25
Alignment explanation
Indices: 73371558--73371622 Score: 78
Period size: 26 Copynumber: 2.5 Consensus size: 25
73371548 CATATATTTC
*
73371558 CATATAACCAATTCTTGTAAACATTT
1 CATATAACC-ATTCTTGTAAACAATT
*
73371584 CATACAACCATT-TTGTATAAACAATT
1 CATATAACCATTCTTG--TAAACAATT
73371610 CATATAACCATTC
1 CATATAACCATTC
73371623 GTCATCAGGG
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
24 3 0.09
25 3 0.09
26 27 0.82
ACGTcount: A:0.40, C:0.22, G:0.03, T:0.35
Consensus pattern (25 bp):
CATATAACCATTCTTGTAAACAATT
Found at i:73371767 original size:46 final size:46
Alignment explanation
Indices: 73371705--73372070 Score: 536
Period size: 46 Copynumber: 8.0 Consensus size: 46
73371695 TTATCTTCAA
* * * * * *
73371705 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
* * ** *
73371751 CACGTTGCCATGGTGTCTTTCAACCATGGTCTTATTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
73371797 CACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* * *
73371843 CATGTTGCCATGGTATCTTTCAACGATGGTCATACGCATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* *
73371889 CATGTTGTCATGGTATCTTTCAACAATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
73371935 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
73371981 CATGTTGCCATGGTATCTTTCAACCATTGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* *
73372027 CATGTTGCTATGGTATCTTTCAACCATGGTTTTACACATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
73372071 TTCAGAAAGC
Statistics
Matches: 296, Mismatches: 23, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
45 4 0.01
46 292 0.99
ACGTcount: A:0.23, C:0.23, G:0.14, T:0.40
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
Found at i:73374220 original size:28 final size:28
Alignment explanation
Indices: 73374180--73374273 Score: 170
Period size: 28 Copynumber: 3.3 Consensus size: 28
73374170 AAACTTTTCA
73374180 TATTTACAATTTAACCTCTCAGTTTTTGAG
1 TATTTAC--TTTAACCTCTCAGTTTTTGAG
73374210 TATTTACTTTAACCTCTCAGTTTTTGAG
1 TATTTACTTTAACCTCTCAGTTTTTGAG
73374238 TATTTACTTTAACCTCTCAGTTTTTGAG
1 TATTTACTTTAACCTCTCAGTTTTTGAG
73374266 TATTTACT
1 TATTTACT
73374274 CTTGTGCATC
Statistics
Matches: 64, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
28 57 0.89
30 7 0.11
ACGTcount: A:0.23, C:0.17, G:0.10, T:0.50
Consensus pattern (28 bp):
TATTTACTTTAACCTCTCAGTTTTTGAG
Found at i:73379272 original size:55 final size:55
Alignment explanation
Indices: 73379208--73379326 Score: 148
Period size: 55 Copynumber: 2.2 Consensus size: 55
73379198 CTGCTAAAAC
* * *
73379208 AACACGGGCGTGCGACACGCCCGTGCCTTAAAACCGTGGCTGAACCTGTCAAATT
1 AACACGGGCGTGCGACACGCCCATGCCTTAAAACCATGGCTAAACCTGTCAAATT
* * ** * * *
73379263 AACATGGGCGTGCTACACGCCCATGTTTTGAAACCATGGGTAAACCTGTCAATTT
1 AACACGGGCGTGCGACACGCCCATGCCTTAAAACCATGGCTAAACCTGTCAAATT
73379318 AACACGGGC
1 AACACGGGC
73379327 ATGCACCTGC
Statistics
Matches: 53, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
55 53 1.00
ACGTcount: A:0.27, C:0.28, G:0.24, T:0.21
Consensus pattern (55 bp):
AACACGGGCGTGCGACACGCCCATGCCTTAAAACCATGGCTAAACCTGTCAAATT
Found at i:73381321 original size:6 final size:6
Alignment explanation
Indices: 73381291--73381452 Score: 81
Period size: 6 Copynumber: 26.8 Consensus size: 6
73381281 AAGAAACATT
* * * *
73381291 ATCAGA A-CTAGA ATCAAA ATAAGA ATGAGA ATCAGA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * *
73381340 ATTAGA GTCAGA ATCAGA ATCAGA ATTAGGTA AT-AGA A--A-A ATCAGA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA
* *
73381386 ATCA-A TATCAGGTA A-CAGA ATCAGA ATCAGA ATCAAA ATCAGA ATTAGGTA
1 ATCAGA -ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A
*
73381437 A-CAGA ATCAAA ATCAG
1 ATCAGA ATCAGA ATCAG
73381453 TATTATGTAA
Statistics
Matches: 120, Mismatches: 18, Indels: 36
0.69 0.10 0.21
Matches are distributed among these distances:
3 2 0.02
4 1 0.01
5 10 0.08
6 89 0.74
7 10 0.08
8 7 0.06
9 1 0.01
ACGTcount: A:0.51, C:0.12, G:0.18, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:73381398 original size:28 final size:29
Alignment explanation
Indices: 73381348--73381427 Score: 92
Period size: 28 Copynumber: 2.7 Consensus size: 29
73381338 GAATTAGAGT
* *
73381348 CAGAATCAGAATCAGAATTAGGTAATAGAA
1 CAGAATCAGAATCA-AATCAGGTAACAGAA
73381378 -A-AATCAGAATCAATATCAGGTAACAGAA
1 CAGAATCAGAATCAA-ATCAGGTAACAGAA
73381406 TCAGAATCAGAATCAAAATCAG
1 -CAGAATCAGAATC-AAATCAG
73381428 AATTAGGTAA
Statistics
Matches: 43, Mismatches: 2, Indels: 9
0.80 0.04 0.17
Matches are distributed among these distances:
27 1 0.02
28 23 0.53
29 1 0.02
30 1 0.02
31 15 0.35
32 2 0.05
ACGTcount: A:0.51, C:0.14, G:0.16, T:0.19
Consensus pattern (29 bp):
CAGAATCAGAATCAAATCAGGTAACAGAA
Found at i:73381404 original size:65 final size:65
Alignment explanation
Indices: 73381318--73381480 Score: 190
Period size: 65 Copynumber: 2.6 Consensus size: 65
73381308 AATAAGAATG
* * * * *
73381318 AGAATCAGAATCAGGTGACAGAATTAGAGTCAGAATCAGAATCAGAATTAGGTAATAGAAAAATC
1 AGAATCAGAATCAGGTAACAGAATCAGAATCAGAATCAAAATCAGAATTAGGTAACAGAAAAATC
73381383 AGAATCA-ATATCAGGTAACAGAATCAGAATCAGAATCAAAATCAGAATTAGGTAACAG---AAT
1 AGAATCAGA-ATCAGGTAACAGAATCAGAATCAGAATCAAAATCAGAATTAGGTAACAGAAAAAT
73381444 C
65 C
* * * * * *
73381445 AAAATCAGTATTATGTAACAAAATCAGGATCAGAAT
1 AGAATCAGAATCAGGTAACAGAATCAGAATCAGAAT
73381481 GTGAATGCAA
Statistics
Matches: 85, Mismatches: 11, Indels: 7
0.83 0.11 0.07
Matches are distributed among these distances:
62 33 0.39
64 1 0.01
65 51 0.60
ACGTcount: A:0.49, C:0.12, G:0.18, T:0.21
Consensus pattern (65 bp):
AGAATCAGAATCAGGTAACAGAATCAGAATCAGAATCAAAATCAGAATTAGGTAACAGAAAAATC
Found at i:73381426 original size:37 final size:37
Alignment explanation
Indices: 73381379--73381452 Score: 105
Period size: 37 Copynumber: 2.0 Consensus size: 37
73381369 GTAATAGAAA
* *
73381379 AATCAGAATCA-ATATCAGGTAACAGAATCAGAATCAG
1 AATCAAAATCAGA-ATCAGGTAACAGAATCAAAATCAG
*
73381416 AATCAAAATCAGAATTAGGTAACAGAATCAAAATCAG
1 AATCAAAATCAGAATCAGGTAACAGAATCAAAATCAG
73381453 TATTATGTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 32 0.97
38 1 0.03
ACGTcount: A:0.51, C:0.15, G:0.15, T:0.19
Consensus pattern (37 bp):
AATCAAAATCAGAATCAGGTAACAGAATCAAAATCAG
Found at i:73381441 original size:25 final size:25
Alignment explanation
Indices: 73381413--73381480 Score: 91
Period size: 25 Copynumber: 2.7 Consensus size: 25
73381403 GAATCAGAAT
73381413 CAGAATCAAAATCAGAATTAGGTAA
1 CAGAATCAAAATCAGAATTAGGTAA
* *
73381438 CAGAATCAAAATCAGTATTATGTAA
1 CAGAATCAAAATCAGAATTAGGTAA
* **
73381463 CAAAATCAGGATCAGAAT
1 CAGAATCAAAATCAGAAT
73381481 GTGAATGCAA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.50, C:0.13, G:0.15, T:0.22
Consensus pattern (25 bp):
CAGAATCAAAATCAGAATTAGGTAA
Found at i:73381668 original size:27 final size:27
Alignment explanation
Indices: 73381598--73381671 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
73381588 AGCATGGCTG
* * *
73381598 CCAGAA-CAGATATTATGACAGAGTCA
1 CCAGAATCAGATATTGTGGCAGAGCCA
73381624 CCAG-ATACAGATATTGTGGCAGAGCCA
1 CCAGAAT-CAGATATTGTGGCAGAGCCA
*
73381651 CCAGAATCAGATAATGTGGCA
1 CCAGAATCAGATATTGTGGCA
73381672 AAGCTACTTA
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
25 1 0.02
26 4 0.10
27 34 0.83
28 2 0.05
ACGTcount: A:0.38, C:0.20, G:0.23, T:0.19
Consensus pattern (27 bp):
CCAGAATCAGATATTGTGGCAGAGCCA
Found at i:73381827 original size:78 final size:78
Alignment explanation
Indices: 73381707--73381943 Score: 348
Period size: 78 Copynumber: 3.0 Consensus size: 78
73381697 CAAAGCTATT
* * * * *
73381707 GATAACGGGCCTATAATCGGCACGACGCCCACAATAACGGCACACAGTCTTCGGTAACATGACCG
1 GATAACGGGTCTATAATCGGCACGAAGCCCACAATAATGGCACACAGCCTTCGGTAACATGATCG
73381772 GCACTCAGCCATC
66 GCACTCAGCCATC
* * * *
73381785 GATAACGGGTCTATAATCGGCACGAAGCCTACAATAATGGCACACAGCCTTTGGCAACATTATCG
1 GATAACGGGTCTATAATCGGCACGAAGCCCACAATAATGGCACACAGCCTTCGGTAACATGATCG
73381850 GCACTCAGCCATC
66 GCACTCAGCCATC
* * * *
73381863 GATAACGAGTCTATAATCGACATGAAGCCCACAATAATGGCACACAACCTTCGGTAACATGATCG
1 GATAACGGGTCTATAATCGGCACGAAGCCCACAATAATGGCACACAGCCTTCGGTAACATGATCG
*
73381928 GCATTCAGCCATC
66 GCACTCAGCCATC
73381941 GAT
1 GAT
73381944 CGGTCAACAG
Statistics
Matches: 141, Mismatches: 18, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
78 141 1.00
ACGTcount: A:0.32, C:0.29, G:0.20, T:0.19
Consensus pattern (78 bp):
GATAACGGGTCTATAATCGGCACGAAGCCCACAATAATGGCACACAGCCTTCGGTAACATGATCG
GCACTCAGCCATC
Found at i:73381988 original size:27 final size:27
Alignment explanation
Indices: 73381949--73382059 Score: 145
Period size: 27 Copynumber: 4.1 Consensus size: 27
73381939 TCGATCGGTC
* *
73381949 AACAGATA-TTGTGACAGAGTCACCAG
1 AACAGATATTTGTGGCAGAGCCACCAG
73381975 ATACAGATA-TTGTGGCAGAGCCACCAG
1 A-ACAGATATTTGTGGCAGAGCCACCAG
* *
73382002 AGCAGATATTTGTGGCATAGCCACCAG
1 AACAGATATTTGTGGCAGAGCCACCAG
*
73382029 AAACAGATATTTGTGGCATAGCCACCAG
1 -AACAGATATTTGTGGCAGAGCCACCAG
73382057 AAC
1 AAC
73382060 GCTTCCTCCA
Statistics
Matches: 77, Mismatches: 5, Indels: 5
0.89 0.06 0.06
Matches are distributed among these distances:
26 7 0.09
27 44 0.57
28 26 0.34
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.20
Consensus pattern (27 bp):
AACAGATATTTGTGGCAGAGCCACCAG
Found at i:73382331 original size:27 final size:27
Alignment explanation
Indices: 73382301--73382408 Score: 144
Period size: 27 Copynumber: 4.0 Consensus size: 27
73382291 TACCCAATAA
* * *
73382301 GGGTATCTCGGTAATTCTACCCTGCAG
1 GGGTATTTCAGTAATTCTACCCTACAG
* *
73382328 GGGTATTTCAGTATTTCTACCCTATAG
1 GGGTATTTCAGTAATTCTACCCTACAG
73382355 GGGTATTTCAGTAATTCTACCCTACAG
1 GGGTATTTCAGTAATTCTACCCTACAG
* * *
73382382 GTGTATTTCAGTAATACTAGCCTACAG
1 GGGTATTTCAGTAATTCTACCCTACAG
73382409 ATATGAGATT
Statistics
Matches: 71, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 71 1.00
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.34
Consensus pattern (27 bp):
GGGTATTTCAGTAATTCTACCCTACAG
Found at i:73382349 original size:54 final size:53
Alignment explanation
Indices: 73382287--73382394 Score: 153
Period size: 54 Copynumber: 2.0 Consensus size: 53
73382277 TAAAATGGTA
* *
73382287 ATTTTACCCAATAAGGGTATCTCGGTAATTCTACCCTGCAGGGGTATTTCAGT
1 ATTTTACCCAATAAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCAGT
* * * *
73382340 ATTTCTACCCTATAGGGGTATTTCAGTAATTCTACCCTACAGGTGTATTTCAGT
1 ATTT-TACCCAATAAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCAGT
73382394 A
1 A
73382395 ATACTAGCCT
Statistics
Matches: 48, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
53 4 0.08
54 44 0.92
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (53 bp):
ATTTTACCCAATAAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCAGT
Found at i:73388720 original size:43 final size:42
Alignment explanation
Indices: 73388660--73388779 Score: 188
Period size: 43 Copynumber: 2.8 Consensus size: 42
73388650 TACTGTACCA
73388660 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCATATCG
* * *
73388702 ATGCCAATAGCCCAGATATGGTCTTACACG-AAGTTTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACATGTAA-TCTCATATCG
73388745 ATGCCATATCCCAGATATGGTCTTACATGTAATCT
1 ATGCCATATCCCAGATATGGTCTTACATGTAATCT
73388780 TAGTAACCCT
Statistics
Matches: 69, Mismatches: 6, Indels: 6
0.85 0.07 0.07
Matches are distributed among these distances:
42 31 0.45
43 38 0.55
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACATGTAATCTCATATCG
Found at i:73395537 original size:27 final size:28
Alignment explanation
Indices: 73395501--73395553 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 28
73395491 ACCTCATAAT
* * *
73395501 TCTCTGTGTTTCTTGTCTCGGTGGACTA
1 TCTCTGTGTTTATTGTCCCGGCGGACTA
73395529 TCTC-GTGTTTATTGTCCCGGCGGAC
1 TCTCTGTGTTTATTGTCCCGGCGGAC
73395554 CATGATGATG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 18 0.82
28 4 0.18
ACGTcount: A:0.08, C:0.25, G:0.26, T:0.42
Consensus pattern (28 bp):
TCTCTGTGTTTATTGTCCCGGCGGACTA
Found at i:73396230 original size:23 final size:23
Alignment explanation
Indices: 73396200--73396255 Score: 103
Period size: 23 Copynumber: 2.4 Consensus size: 23
73396190 CTCTGTGACT
73396200 GTGTAGCTTAGGGTCACACGGCC
1 GTGTAGCTTAGGGTCACACGGCC
73396223 GTGTAGCTTAGGGTCACACGGCC
1 GTGTAGCTTAGGGTCACACGGCC
*
73396246 GTGTAACTTA
1 GTGTAGCTTA
73396256 CTTTGCCCGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.20, C:0.23, G:0.32, T:0.25
Consensus pattern (23 bp):
GTGTAGCTTAGGGTCACACGGCC
Found at i:73398046 original size:25 final size:24
Alignment explanation
Indices: 73398018--73398112 Score: 118
Period size: 25 Copynumber: 3.8 Consensus size: 24
73398008 TCCTGTACAT
*
73398018 GTATGCTTACACGAGCTGTGAATCG
1 GTATGCTT-CACGAGCTGTAAATCG
* *
73398043 GTATGCTTTCAGGAGCTATAAATCG
1 GTATGC-TTCACGAGCTGTAAATCG
73398068 GTATGCTCTCACGAGCTGTAAATCG
1 GTATGCT-TCACGAGCTGTAAATCG
*
73398093 GTATGCTCTCATGAGCTGTA
1 GTATGCT-TCACGAGCTGTA
73398113 GGTCAGAACG
Statistics
Matches: 62, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
24 1 0.02
25 59 0.95
26 2 0.03
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.31
Consensus pattern (24 bp):
GTATGCTTCACGAGCTGTAAATCG
Found at i:73409203 original size:117 final size:119
Alignment explanation
Indices: 73409066--73409302 Score: 361
Period size: 117 Copynumber: 2.0 Consensus size: 119
73409056 ACATAGATAA
* * * * **
73409066 AATTAACATATGAATTTGATTCATATAAAATATTAATTGTATATATTTTATCGGATTTATTAATA
1 AATTAACATATGAAGTTGATTCATATAAAATATTAATTGCATATATTGTACCAAATTTATTAATA
*
73409131 TAAATAGTTATATTAATTAATTCTGGTCAAAATAT-A-AGACATGGAAATTAAT
66 TAAACAGTTATATTAATTAATTCTGGTCAAAATATAAGAGACATGGAAATTAAT
* * * *
73409183 AATTAATATATGGAGTTGATTCATATAAATTATTAATTGCGTATATTGTACCAAATTTATTAATA
1 AATTAACATATGAAGTTGATTCATATAAAATATTAATTGCATATATTGTACCAAATTTATTAATA
73409248 TAAACAGTTATATTAATTAATTCTGGTCAAAATATAAGAGACATGGAAATTAAT
66 TAAACAGTTATATTAATTAATTCTGGTCAAAATATAAGAGACATGGAAATTAAT
73409302 A
1 A
73409303 TGCTTTTGGA
Statistics
Matches: 107, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
117 89 0.83
118 1 0.01
119 17 0.16
ACGTcount: A:0.43, C:0.06, G:0.11, T:0.40
Consensus pattern (119 bp):
AATTAACATATGAAGTTGATTCATATAAAATATTAATTGCATATATTGTACCAAATTTATTAATA
TAAACAGTTATATTAATTAATTCTGGTCAAAATATAAGAGACATGGAAATTAAT
Found at i:73409331 original size:138 final size:137
Alignment explanation
Indices: 73409181--73409859 Score: 750
Period size: 138 Copynumber: 5.0 Consensus size: 137
73409171 ATGGAAATTA
* * * *
73409181 ATAATTAATATATGGAGTTGATTCATATAAATTATTAATTGCGTATATTGTACCAAATTTATTAA
1 ATAATTAATATATGAATTTGATTCATATAAAATATTAATTG-GTATATTTTACCAAATTTATTAA
* *
73409246 TATAAACAGTTATATTAATTAA-TTCTGGTCAAAATATAAGAGACATGGAAATTAATATGCTTTT
65 TATAAACAGTTATATTAATTAATTTC-GGTCAAAATATAAAAGACATGGAAATTAATATTCTTTT
73409310 GGAAAGAAT
129 GGAAAGAAT
* * * *
73409319 ATAATTAATATATGAATTTTATTTATGA-AAAATATTAATTTGATATATTTTACCAAATTTATAA
1 ATAATTAATATATGAATTTGATTCAT-ATAAAATATTAA-TTGGTATATTTTACCAAATTTATTA
* * *
73409383 ATATAAACAATTATATTAATTAATTTCAGTCAAAATATAAAAGAAATGGAAATTAATATTCTTTT
64 ATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCTTTT
*
73409448 TGAAAGAAT
129 GGAAAGAAT
* ***
73409457 ATAATTAATATATGAATTTGATTCAT-TCAAAATATTAATTGTTTATATTTTAATGAATTTATTA
1 ATAATTAATATATGAATTTGATTCATAT-AAAATATTAATTG-GTATATTTTACCAAATTTATTA
*
73409521 ATATAAACAATTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGAAATT-ATATTCTTTT
64 ATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCTTTT
73409585 GGAAAG-A-
129 GGAAAGAAT
* ** ** * *
73409592 AT-A--CA-AT-T-CCTTT--TTC---TAACTTATTAATTGTTATATTTTACCAAATTTATAAAT
1 ATAATTAATATATGAATTTGATTCATATAAAATATTAATTGGTATATTTTACCAAATTTATTAAT
* * * **
73409646 ATAAATAGTTATATTAATTAATTTTGGTCAAAATATAAAAGGCATATAAATTAATATTCTTTTGG
66 ATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCTTTTGG
73409711 AAAGAAT
131 AAAGAAT
* * * ***
73409718 ATAATTAATATATGAATTTGATTTATACAAAATATTAATT-GTATA-TATAATGAATTTATTAAT
1 ATAATTAATATATGAATTTGATTCATATAAAATATTAATTGGTATATTTTACCAAATTTATTAAT
* * * *
73409781 ATAAAAACAGTTATATTAATTAATTTCGGTTAAAATATAAATGATATTGAAATTATTATTATT-T
66 AT--AAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGAAATTA--A-TATTCT
73409845 TTTGGAAAGAAT
126 TTTGGAAAGAAT
73409857 ATA
1 ATA
73409860 TGTAACAACT
Statistics
Matches: 456, Mismatches: 60, Indels: 49
0.81 0.11 0.09
Matches are distributed among these distances:
123 66 0.14
124 27 0.06
125 2 0.00
126 2 0.00
127 4 0.01
129 4 0.01
130 3 0.01
131 3 0.01
132 4 0.01
134 3 0.01
135 17 0.04
136 5 0.01
137 71 0.16
138 217 0.48
139 24 0.05
140 4 0.01
ACGTcount: A:0.44, C:0.05, G:0.09, T:0.42
Consensus pattern (137 bp):
ATAATTAATATATGAATTTGATTCATATAAAATATTAATTGGTATATTTTACCAAATTTATTAAT
ATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCTTTTGG
AAAGAAT
Found at i:73409598 original size:67 final size:66
Alignment explanation
Indices: 73409389--73409599 Score: 153
Period size: 67 Copynumber: 3.1 Consensus size: 66
73409379 ATAAATATAA
73409389 ACAATTATATTAATTAATTTCAGTCAAAATATAAAAGAAATGGAAATTAATATTCTTTTTGAAAG
1 ACAATTATATTAATTAATTTCAGTCAAAATATAAAAGAAATGGAAATT-ATATTC-TTTTGAAAG
73409454 AAT
64 AAT
* * * ** * *** * *
73409457 ATAATTAATATATGAATTTGA-TTCATTCAAAATATTAATTGTTTATATTTTAATGA-ATT-TAT
1 ACAATT-ATAT-T-AA-TTAATTTCAGTCAAAATA-TAAAAG---AAATGGAAATTATATTCTTT
*
73409519 T-AATATAA-
58 TGAA-AGAAT
* *
73409527 ACAATTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGAAATTATATTCTTTTGGAAAGA
1 ACAATTATATTAATTAATTTCAGTCAAAATATAAAAGAAATGGAAATTATATTCTTTT-GAAAGA
73409592 AT
65 AT
73409594 ACAATT
1 ACAATT
73409600 CCTTTTTCTA
Statistics
Matches: 103, Mismatches: 25, Indels: 31
0.65 0.16 0.19
Matches are distributed among these distances:
63 7 0.07
64 3 0.03
65 3 0.03
66 10 0.10
67 21 0.20
68 6 0.06
69 8 0.08
70 8 0.08
71 20 0.19
72 7 0.07
73 3 0.03
74 1 0.01
75 6 0.06
ACGTcount: A:0.45, C:0.06, G:0.09, T:0.40
Consensus pattern (66 bp):
ACAATTATATTAATTAATTTCAGTCAAAATATAAAAGAAATGGAAATTATATTCTTTTGAAAGAA
T
Found at i:73409649 original size:261 final size:263
Alignment explanation
Indices: 73409351--73409857 Score: 772
Period size: 261 Copynumber: 1.9 Consensus size: 263
73409341 TTATGAAAAA
73409351 TATTAATTTGATATATTTTACCAAATTTATAAATATAAACAATTATATTAATTAATTTCAGTCAA
1 TATTAATTTGATATATTTTACCAAATTTATAAATATAAACAATTATATTAATTAATTTCAGTCAA
* *
73409416 AATATAAAAGAAATGGAAATTAATATTCTTTTTGAAAGAATATAATTAATATATGAATTTGATTC
66 AATATAAAAGAAATAGAAATTAATATTCTTTTGGAAAGAATATAATTAATATATGAATTTGATTC
* *
73409481 ATTCAAAATATTAATTGTTTATATTTTAATGAATTTATTAATAT-AAACAATTATATTAATTAAT
131 ATACAAAATATTAATTG--TATA-TATAATGAATTTATTAATATAAAACAATTATATTAATTAAT
73409545 TTCGGTCAAAATATAAAAGACATGGAAATTA-TA-T-TCTTTTGGAAAGAATACAATTCCTTTTT
193 TTCGGTCAAAATATAAAAGACATGGAAATTATTATTATCTTTTGGAAAGAATACAATTCCTTTTT
73409607 CTAACT
258 CTAACT
* * * **
73409613 TATTAA-TTGTTATATTTTACCAAATTTATAAATATAAATAGTTATATTAATTAATTTTGGTCAA
1 TATTAATTTGATATATTTTACCAAATTTATAAATATAAACAATTATATTAATTAATTTCAGTCAA
** * *
73409677 AATATAAAAGGCATATAAATTAATATTCTTTTGGAAAGAATATAATTAATATATGAATTTGATTT
66 AATATAAAAGAAATAGAAATTAATATTCTTTTGGAAAGAATATAATTAATATATGAATTTGATTC
*
73409742 ATACAAAATATTAATTGTATATATAATGAATTTATTAATATAAAAACAGTTATATTAATTAATTT
131 ATACAAAATATTAATTGTATATATAATGAATTTATTAATAT-AAAACAATTATATTAATTAATTT
* * * * *
73409807 CGGTTAAAATATAAATGATATTGAAATTATTATTATTTTTTGGAAAGAATA
195 CGGTCAAAATATAAAAGACATGGAAATTATTATTATCTTTTGGAAAGAATA
73409858 TATGTAACAA
Statistics
Matches: 221, Mismatches: 19, Indels: 9
0.89 0.08 0.04
Matches are distributed among these distances:
258 19 0.09
259 4 0.02
260 46 0.21
261 130 0.59
262 7 0.03
263 15 0.07
ACGTcount: A:0.44, C:0.05, G:0.08, T:0.43
Consensus pattern (263 bp):
TATTAATTTGATATATTTTACCAAATTTATAAATATAAACAATTATATTAATTAATTTCAGTCAA
AATATAAAAGAAATAGAAATTAATATTCTTTTGGAAAGAATATAATTAATATATGAATTTGATTC
ATACAAAATATTAATTGTATATATAATGAATTTATTAATATAAAACAATTATATTAATTAATTTC
GGTCAAAATATAAAAGACATGGAAATTATTATTATCTTTTGGAAAGAATACAATTCCTTTTTCTA
ACT
Found at i:73409658 original size:123 final size:125
Alignment explanation
Indices: 73409489--73409723 Score: 357
Period size: 123 Copynumber: 1.9 Consensus size: 125
73409479 TCATTCAAAA
** *
73409489 TATTAATTGTTTATATTTTAATGAATTTATTAATATAAACAATTATATTAATTAATTTCGGTCAA
1 TATTAATTGTTTATATTTTAACAAATTTATAAATATAAACAATTATATTAATTAATTTCGGTCAA
*
73409554 AATATAAAAGACATGGAAATT-ATATTCTTTTGGAAAGAATACAATTCCTTTTTCTAACT
66 AATATAAAAGACATAGAAATTAATATTCTTTTGGAAAGAATACAATTCCTTTTTCTAACT
* * * *
73409613 TATTAATTG-TTATATTTTACCAAATTTATAAATATAAATAGTTATATTAATTAATTTTGGTCAA
1 TATTAATTGTTTATATTTTAACAAATTTATAAATATAAACAATTATATTAATTAATTTCGGTCAA
* * *
73409677 AATATAAAAGGCATATAAATTAATATTCTTTTGGAAAGAATATAATT
66 AATATAAAAGACATAGAAATTAATATTCTTTTGGAAAGAATACAATT
73409724 AATATATGAA
Statistics
Matches: 99, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
123 66 0.67
124 33 0.33
ACGTcount: A:0.42, C:0.06, G:0.08, T:0.43
Consensus pattern (125 bp):
TATTAATTGTTTATATTTTAACAAATTTATAAATATAAACAATTATATTAATTAATTTCGGTCAA
AATATAAAAGACATAGAAATTAATATTCTTTTGGAAAGAATACAATTCCTTTTTCTAACT
Found at i:73411962 original size:26 final size:26
Alignment explanation
Indices: 73411933--73411985 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
73411923 TCCAACATGC
73411933 ATTTAGGTCAATTTA-CTCCTAGGGGT
1 ATTTAGGT-AATTTATCTCCTAGGGGT
* *
73411959 ATTTCGGTACTTTATCTCCTAGGGGT
1 ATTTAGGTAATTTATCTCCTAGGGGT
73411985 A
1 A
73411986 AAATTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 5 0.21
26 19 0.79
ACGTcount: A:0.21, C:0.17, G:0.23, T:0.40
Consensus pattern (26 bp):
ATTTAGGTAATTTATCTCCTAGGGGT
Found at i:73414195 original size:46 final size:46
Alignment explanation
Indices: 73414128--73414253 Score: 209
Period size: 46 Copynumber: 2.7 Consensus size: 46
73414118 AACCCGCCCC
* * *
73414128 TAAGTGAACTCGGGCTCAACTCAACGAGCTT-GGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCATCCA
73414174 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
73414220 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
73414254 TGCTCAACCA
Statistics
Matches: 76, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
45 2 0.03
46 74 0.97
ACGTcount: A:0.29, C:0.27, G:0.23, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:73414710 original size:30 final size:30
Alignment explanation
Indices: 73414676--73414735 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
73414666 ATTTAATATG
73414676 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
73414706 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
73414736 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:73421765 original size:92 final size:92
Alignment explanation
Indices: 73421654--73421822 Score: 295
Period size: 92 Copynumber: 1.8 Consensus size: 92
73421644 CCCCTAAGTG
*
73421654 AACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 AACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
73421718 CGAGTTCGGATGCCTAGTTACATTTCAC
65 CGAGTTCGGATGCCTAGTTACATTTCAC
* *
73421746 AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAAC
73421811 GAGTTCGGATGC
66 GAGTTCGGATGC
73421823 TCAACCATCC
Statistics
Matches: 73, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
91 2 0.03
92 71 0.97
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (92 bp):
AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATTTCAC
Found at i:73421819 original size:46 final size:45
Alignment explanation
Indices: 73421648--73421818 Score: 193
Period size: 46 Copynumber: 3.7 Consensus size: 45
73421638 AACCCGCCCC
* *
73421648 TAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC-GGCATTCGCATCCA
* * *
73421694 TAAGTGAACTCAGACTCAACTCAACGAGTTCGG-ATGC-CTAGTTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGCATTCGC-A--TCCA
*****
73421740 TTTCACAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG-CATTCGCATCCA
73421786 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
73421819 ATGCTCAACC
Statistics
Matches: 101, Mismatches: 18, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 90 0.89
48 4 0.04
49 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGCATTCGCATCCA
Found at i:73422273 original size:30 final size:30
Alignment explanation
Indices: 73422239--73422298 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
73422229 ATTTAATACG
73422239 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
73422269 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
73422299 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:73423525 original size:24 final size:24
Alignment explanation
Indices: 73423493--73423597 Score: 156
Period size: 24 Copynumber: 4.3 Consensus size: 24
73423483 GCCGGCCAAC
*
73423493 TCCTGCTCCCTGATCAGCTCCTAAA
1 TCCT-CTCCCTTATCAGCTCCTAAA
* *
73423518 TCTTCTCCTTTATCAGCTCCTAAA
1 TCCTCTCCCTTATCAGCTCCTAAA
73423542 TCCTCTCCCTTATCAGCTCCTAAA
1 TCCTCTCCCTTATCAGCTCCTAAA
*
73423566 TCCTCTCCCTTATTAGCTCCTAAA
1 TCCTCTCCCTTATCAGCTCCTAAA
*
73423590 TCTTCTCC
1 TCCTCTCC
73423598 TGATAGCCTT
Statistics
Matches: 73, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
24 70 0.96
25 3 0.04
ACGTcount: A:0.19, C:0.39, G:0.06, T:0.36
Consensus pattern (24 bp):
TCCTCTCCCTTATCAGCTCCTAAA
Found at i:73430138 original size:25 final size:26
Alignment explanation
Indices: 73430110--73430161 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
73430100 TCCAACAAGC
73430110 ATTT-GGTCAATTTA-CTCCTAGGGGT
1 ATTTCGGT-AATTTATCTCCTAGGGGT
*
73430135 ATTTCGGTACTTTATCTCCTAGGGGT
1 ATTTCGGTAATTTATCTCCTAGGGGT
73430161 A
1 A
73430162 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 9 0.38
26 15 0.62
ACGTcount: A:0.19, C:0.17, G:0.23, T:0.40
Consensus pattern (26 bp):
ATTTCGGTAATTTATCTCCTAGGGGT
Found at i:73431413 original size:24 final size:24
Alignment explanation
Indices: 73431381--73431501 Score: 179
Period size: 24 Copynumber: 5.0 Consensus size: 24
73431371 AACTCCTGCT
*
73431381 CCTTGATCAGCTCCTAAATCTTCTC
1 CCTT-ATCAGCTCCTAAATCCTCTC
* *
73431406 CTTTATCAGATCCTAAATCCTCTC
1 CCTTATCAGCTCCTAAATCCTCTC
*
73431430 CCTTATTAGCTCCTAAATCCTCTC
1 CCTTATCAGCTCCTAAATCCTCTC
*
73431454 CCTTATTAGCTCCTAAATCCTCTC
1 CCTTATCAGCTCCTAAATCCTCTC
*
73431478 CCTTATCAGCTCCTAAATCTTCTC
1 CCTTATCAGCTCCTAAATCCTCTC
73431502 TTAACAGTCT
Statistics
Matches: 88, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
24 85 0.97
25 3 0.03
ACGTcount: A:0.21, C:0.36, G:0.05, T:0.37
Consensus pattern (24 bp):
CCTTATCAGCTCCTAAATCCTCTC
Found at i:73433681 original size:20 final size:20
Alignment explanation
Indices: 73433656--73433698 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
73433646 AATATTTTTT
*
73433656 TTTGGAAAGAATATAATTCC
1 TTTGGAAAGAACATAATTCC
73433676 TTTGGAAAGAACATAATTCC
1 TTTGGAAAGAACATAATTCC
73433696 TTT
1 TTT
73433699 TTTTAACTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.37
Consensus pattern (20 bp):
TTTGGAAAGAACATAATTCC
Found at i:73439654 original size:39 final size:39
Alignment explanation
Indices: 73439600--73439832 Score: 367
Period size: 39 Copynumber: 6.0 Consensus size: 39
73439590 ATTATATTAT
* *
73439600 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
73439639 CAGCACGAAGCCTGCGGGACTTTGGGCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
73439678 CAGCACGAAGCCTGCGGGACTTTAGTCCGAATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
** * *
73439717 CAGCTTGAAGCCTGCGGGACTTTGGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
73439756 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
73439795 CAGCACGAAGCCTGCGGGACTTTAGCCTGGATACATTT
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
73439833 TTAGTGTCTT
Statistics
Matches: 176, Mismatches: 18, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 176 1.00
ACGTcount: A:0.23, C:0.28, G:0.26, T:0.23
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:73446458 original size:34 final size:33
Alignment explanation
Indices: 73446416--73446481 Score: 105
Period size: 34 Copynumber: 2.0 Consensus size: 33
73446406 TTATTTGCAT
*
73446416 ACTATACTGAAATGGGCTAAGGCCCAGACTGCC
1 ACTATACTGAAACGGGCTAAGGCCCAGACTGCC
*
73446449 ACTATTACTGAAACGGGCTCAGGCCCAGACTGC
1 ACTA-TACTGAAACGGGCTAAGGCCCAGACTGC
73446482 TTCTGCTACT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 4 0.13
34 26 0.87
ACGTcount: A:0.29, C:0.29, G:0.24, T:0.18
Consensus pattern (33 bp):
ACTATACTGAAACGGGCTAAGGCCCAGACTGCC
Found at i:73446492 original size:34 final size:34
Alignment explanation
Indices: 73446416--73446510 Score: 102
Period size: 34 Copynumber: 2.8 Consensus size: 34
73446406 TTATTTGCAT
*
73446416 ACTA-TACTGAAATGGGCTAAGGCCCAGACTGCC
1 ACTACTACTGAAACGGGCTAAGGCCCAGACTGCC
* * *
73446449 ACTATTACTGAAACGGGCTCAGGCCCAGACTGCT
1 ACTACTACTGAAACGGGCTAAGGCCCAGACTGCC
* * *
73446483 TCTGCTACTGAATGAGGGGCTAAGGCCC
1 ACTACTACTGAA--ACGGGCTAAGGCCC
73446511 CTAACTGAAA
Statistics
Matches: 51, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
33 4 0.08
34 35 0.69
36 12 0.24
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.20
Consensus pattern (34 bp):
ACTACTACTGAAACGGGCTAAGGCCCAGACTGCC
Found at i:73457614 original size:42 final size:42
Alignment explanation
Indices: 73457564--73457673 Score: 132
Period size: 43 Copynumber: 2.6 Consensus size: 42
73457554 GTGAGATTAT
* * *
73457564 GTGTAAGACCATATCTGGGATATGGTATCGATATGAGA-CTTC
1 GTGTAAGACCATATCTGGGATATGGAATCAATATGAGATC-CC
* * *
73457606 GTGTAAGACCATAGCTGGGCTATTGGAATCAATATTAGATCCC
1 GTGTAAGACCATATCTGGGATA-TGGAATCAATATGAGATCCC
*
73457649 ATGTAAGACCATATCTGGGATATGG
1 GTGTAAGACCATATCTGGGATATGG
73457674 CTTTGGTATG
Statistics
Matches: 57, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
42 23 0.40
43 33 0.58
44 1 0.02
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.29
Consensus pattern (42 bp):
GTGTAAGACCATATCTGGGATATGGAATCAATATGAGATCCC
Found at i:73460023 original size:175 final size:174
Alignment explanation
Indices: 73459732--73460080 Score: 644
Period size: 175 Copynumber: 2.0 Consensus size: 174
73459722 TCTAGTTATT
*
73459732 ATCAGCTACTAGTGAAAGATTCGGATGTGCCGAAAACTACATTTAGAACCAGGTATGGACACTAT
1 ATCAGCTACTAGTGAAAGATTCGGATGTGCAGAAAACTACATTTAGAACCAGGTATGGACACTAT
**
73459797 GAATTCCTTGTGATGCCGTTTGGTTTAACTAACACACCTGTAGTATTTATGGATTTGATGAACAA
66 GAATTCCTTGTGATGCCGTTTGGTTTAACTAACACACCTACAGTATTTATGGATTTGATGAACAA
*
73459862 AATCTTCATATTGTATGTAGACAGATTTGTTGTGGTATTTATTGA
131 AATCTT-AGATTGTATGTAGACAGATTTGTTGTGGTATTTATTGA
73459907 ATCAGCTACTAGTGAAAGATTCGGATGTGCAGAAAACTACATTTAGAACCAGGTATGGACACTAT
1 ATCAGCTACTAGTGAAAGATTCGGATGTGCAGAAAACTACATTTAGAACCAGGTATGGACACTAT
73459972 GAATTCCTTGTGATGCCGTTTGGTTTAACTAACACACCTACAGTATTTATGGATTTGATGAACAA
66 GAATTCCTTGTGATGCCGTTTGGTTTAACTAACACACCTACAGTATTTATGGATTTGATGAACAA
*
73460037 AATCTTAGATTGTATTTAGACAGATTTGTTGTGGTATTTATTGA
131 AATCTTAGATTGTATGTAGACAGATTTGTTGTGGTATTTATTGA
73460081 TGATATTCTG
Statistics
Matches: 169, Mismatches: 5, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
174 36 0.21
175 133 0.79
ACGTcount: A:0.31, C:0.14, G:0.20, T:0.35
Consensus pattern (174 bp):
ATCAGCTACTAGTGAAAGATTCGGATGTGCAGAAAACTACATTTAGAACCAGGTATGGACACTAT
GAATTCCTTGTGATGCCGTTTGGTTTAACTAACACACCTACAGTATTTATGGATTTGATGAACAA
AATCTTAGATTGTATGTAGACAGATTTGTTGTGGTATTTATTGA
Found at i:73461100 original size:21 final size:21
Alignment explanation
Indices: 73461074--73461116 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
73461064 TACAAAAAAT
73461074 TTTGCACGAAGCTCATAGTGG
1 TTTGCACGAAGCTCATAGTGG
73461095 TTTGCACGAAGCTCATAGTGG
1 TTTGCACGAAGCTCATAGTGG
73461116 T
1 T
73461117 AACTTATCTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (21 bp):
TTTGCACGAAGCTCATAGTGG
Found at i:73462761 original size:29 final size:30
Alignment explanation
Indices: 73462710--73462766 Score: 73
Period size: 29 Copynumber: 1.9 Consensus size: 30
73462700 ATACAAATTA
* *
73462710 GGGGTTAAATTGTGAAAAGATGA-AAATGT
1 GGGGTAAAAGTGTGAAAAGATGAGAAATGT
73462739 GGGGTAAAAGTGTGAATAA-ATGAGAAAT
1 GGGGTAAAAGTGTGAA-AAGATGAGAAAT
73462767 ATGGATTACT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 18 0.75
30 6 0.25
ACGTcount: A:0.44, C:0.00, G:0.32, T:0.25
Consensus pattern (30 bp):
GGGGTAAAAGTGTGAAAAGATGAGAAATGT
Found at i:73468927 original size:55 final size:55
Alignment explanation
Indices: 73468823--73468958 Score: 157
Period size: 55 Copynumber: 2.5 Consensus size: 55
73468813 GGCTGTGGGA
* * * **
73468823 GAACCTGCCAAAACAACACGGGCGTGCGACACTCCCGTGCCTTGAAACCGTGGCT
1 GAACCTGCCAAAACAACACGGGCATGCGACACGCCCATGCCAAGAAACCGTGGCT
* ** *
73468878 GAACCTGTCAAATTAACACGGGCATGCGACACGCCCATGCCAAGCAACCGTGGGC-
1 GAACCTGCCAAAACAACACGGGCATGCGACACGCCCATGCCAAGAAACCGT-GGCT
* *
73468933 AAACCTGCCAAAACAACACCGGCATG
1 GAACCTGCCAAAACAACACGGGCATG
73468959 GACCTTTATA
Statistics
Matches: 66, Mismatches: 14, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
55 63 0.95
56 3 0.05
ACGTcount: A:0.30, C:0.34, G:0.24, T:0.12
Consensus pattern (55 bp):
GAACCTGCCAAAACAACACGGGCATGCGACACGCCCATGCCAAGAAACCGTGGCT
Found at i:73473281 original size:12 final size:13
Alignment explanation
Indices: 73473245--73473282 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
73473235 AAATATTTGA
73473245 CTTGTTCTTAATT
1 CTTGTTCTTAATT
*
73473258 ATGTGTTCTTAATT
1 CT-TGTTCTTAATT
73473272 CTTG-TCTTAAT
1 CTTGTTCTTAAT
73473283 ATTCCAGGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 7 0.32
13 3 0.14
14 12 0.55
ACGTcount: A:0.18, C:0.13, G:0.11, T:0.58
Consensus pattern (13 bp):
CTTGTTCTTAATT
Found at i:73487242 original size:22 final size:22
Alignment explanation
Indices: 73487216--73487262 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
73487206 CCAAATTCCA
73487216 TACTAAGCACATTCCAAAAACT
1 TACTAAGCACATTCCAAAAACT
*
73487238 TACTAAGCACATTCCAAAAGCT
1 TACTAAGCACATTCCAAAAACT
73487260 TAC
1 TAC
73487263 CAATTTGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.43, C:0.28, G:0.06, T:0.23
Consensus pattern (22 bp):
TACTAAGCACATTCCAAAAACT
Found at i:73487920 original size:42 final size:42
Alignment explanation
Indices: 73487819--73487983 Score: 172
Period size: 43 Copynumber: 3.9 Consensus size: 42
73487809 AGCTCGTACA
** * * * *
73487819 ATGCCAACATCCCAGACGTGGTCGTACATGTAATCAAATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGAAAACAAATA-CG
* *
73487862 ATGCCACTGTCTCAGACAG-GGTCTTACACGAAAACAAATACG
1 ATGCCAATGTCCCAGAC-GTGGTCTTACACGAAAACAAATACG
*
73487904 ATGCCAATGTCCCAGACGTGGTCTTACACGTAAATCATAAGT-CG
1 ATGCCAATGTCCCAGACGTGGTCTTACACG-AAAACA-AA-TACG
* *
73487948 ATGCCAATGTCCCAGATGTGGTATTACACGAAAACA
1 ATGCCAATGTCCCAGACGTGGTCTTACACGAAAACA
73487984 TATATCGGAT
Statistics
Matches: 103, Mismatches: 14, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
41 1 0.01
42 28 0.27
43 40 0.39
44 33 0.32
45 1 0.01
ACGTcount: A:0.33, C:0.25, G:0.19, T:0.22
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACGTGGTCTTACACGAAAACAAATACG
Found at i:73487977 original size:86 final size:85
Alignment explanation
Indices: 73487819--73487983 Score: 208
Period size: 86 Copynumber: 1.9 Consensus size: 85
73487809 AGCTCGTACA
* * *
73487819 ATGCCAACATCCCAGACGTGGTCGTACATGTAATCAAATATCGATGCCACTGTCTCAGACAGGGT
1 ATGCCAACATCCCAGACGTGGTCGTACACGTAATCAAATATCGATGCCAATGTCCCAGACAGGGT
*
73487884 CTTACACGAAAACAAATACG
66 ATTACACGAAAACAAATACG
** * * *
73487904 ATGCCAATGTCCCAGACGTGGTCTTACACGTAAATCATAA-GTCGATGCCAATGTCCCAGA-TGT
1 ATGCCAACATCCCAGACGTGGTCGTACACGT-AATCA-AATATCGATGCCAATGTCCCAGACAG-
73487967 GGTATTACACGAAAACA
63 GGTATTACACGAAAACA
73487984 TATATCGGAT
Statistics
Matches: 68, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
85 28 0.41
86 38 0.56
87 2 0.03
ACGTcount: A:0.33, C:0.25, G:0.19, T:0.22
Consensus pattern (85 bp):
ATGCCAACATCCCAGACGTGGTCGTACACGTAATCAAATATCGATGCCAATGTCCCAGACAGGGT
ATTACACGAAAACAAATACG
Found at i:73498754 original size:27 final size:26
Alignment explanation
Indices: 73498698--73498754 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
73498688 CAACCTTAAC
*
73498698 CCTAGGGGTATATCAGTAATTTTACT
1 CCTAGGGGTATATCAGTAATTTTACA
* *
73498724 CCTAGGGGTATATCTGTAAATTTTCCA
1 CCTAGGGGTATATCAGT-AATTTTACA
73498751 CCTA
1 CCTA
73498755 TAAAGGTATT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
26 16 0.59
27 11 0.41
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (26 bp):
CCTAGGGGTATATCAGTAATTTTACA
Found at i:73504411 original size:21 final size:19
Alignment explanation
Indices: 73504382--73504420 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 19
73504372 CTTTTCTCAA
73504382 ATTTGTTTCACTCTCTTTTTT
1 ATTTGTTT--CTCTCTTTTTT
*
73504403 ATTTTTTTCTCTCTTTTT
1 ATTTGTTTCTCTCTTTTT
73504421 AATAATTTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 10 0.59
21 7 0.41
ACGTcount: A:0.08, C:0.18, G:0.03, T:0.72
Consensus pattern (19 bp):
ATTTGTTTCTCTCTTTTTT
Found at i:73504429 original size:19 final size:19
Alignment explanation
Indices: 73504392--73504431 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
73504382 ATTTGTTTCA
* **
73504392 CTCTCTTTTTTATTTTTTT
1 CTCTCTTTTTAATAATTTT
73504411 CTCTCTTTTTAATAATTTT
1 CTCTCTTTTTAATAATTTT
73504430 CT
1 CT
73504432 TTTCTTTTGC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.12, C:0.17, G:0.00, T:0.70
Consensus pattern (19 bp):
CTCTCTTTTTAATAATTTT
Found at i:73506568 original size:9 final size:9
Alignment explanation
Indices: 73506549--73506584 Score: 56
Period size: 9 Copynumber: 4.0 Consensus size: 9
73506539 GTGCATAAAT
73506549 TTTTCTTTAA
1 TTTT-TTTAA
73506559 TTTTTTTAA
1 TTTTTTTAA
73506568 -TTTTTTAA
1 TTTTTTTAA
73506576 TTTTTTTAA
1 TTTTTTTAA
73506585 CTTACTTCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
8 8 0.32
9 13 0.52
10 4 0.16
ACGTcount: A:0.22, C:0.03, G:0.00, T:0.75
Consensus pattern (9 bp):
TTTTTTTAA
Found at i:73508694 original size:49 final size:49
Alignment explanation
Indices: 73508622--73508810 Score: 236
Period size: 49 Copynumber: 3.8 Consensus size: 49
73508612 TGTGAGGTCA
*
73508622 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGATCG
1 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGATCG
* * * * * *
73508671 CGTGTGTAGTACTAAGTGTAGGCTACTATGCGTACCCGAAAACTGTGATCA
1 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-T-TGATCG
* * *
73508722 CGTGTGTAGTACTAAGTGCATGCTACTAC-TGTACCAGATTATTGGTCG
1 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGATCG
* * *
73508770 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
73508811 GCTTGGGCTA
Statistics
Matches: 117, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
48 30 0.26
49 47 0.40
50 9 0.08
51 31 0.26
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (49 bp):
CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGATCG
Found at i:73508797 original size:99 final size:100
Alignment explanation
Indices: 73508619--73508805 Score: 313
Period size: 99 Copynumber: 1.9 Consensus size: 100
73508609 TATTGTGAGG
* *
73508619 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGATCGCGTGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGATCGCATGTGTAGTACT
*
73508684 AAGTGTAGGCTACTATGCGTACCCGAAAACTGTGA
66 AAGTGCAGGCTACTATGCGTACCCGAAAACTGTGA
* * *
73508719 TCACGTGTGTAGTACTAAGTGCATGCTACTAC-TGTACCAGATTATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGATCGCATGTGTAGTACT
73508783 AAGTGCAGGCTACTATGCGTACC
66 AAGTGCAGGCTACTATGCGTACC
73508806 AGATAGCTTG
Statistics
Matches: 81, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
99 50 0.62
100 31 0.38
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGATCGCATGTGTAGTACT
AAGTGCAGGCTACTATGCGTACCCGAAAACTGTGA
Found at i:73511834 original size:15 final size:15
Alignment explanation
Indices: 73511814--73511865 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
73511804 CTTGGGTTTT
73511814 TTTATTCTAGATTTC
1 TTTATTCTAGATTTC
*
73511829 TTTATTCTAGGTTT-
1 TTTATTCTAGATTTC
*
73511843 TTCTA-TCTTGGATTTC
1 TT-TATTC-TAGATTTC
73511859 TTTATTC
1 TTTATTC
73511866 GGTTTTCTTG
Statistics
Matches: 30, Mismatches: 3, Indels: 7
0.75 0.08 0.17
Matches are distributed among these distances:
14 4 0.13
15 22 0.73
16 4 0.13
ACGTcount: A:0.15, C:0.13, G:0.10, T:0.62
Consensus pattern (15 bp):
TTTATTCTAGATTTC
Found at i:73511842 original size:30 final size:30
Alignment explanation
Indices: 73511808--73511865 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
73511798 TCGTATCTTG
*
73511808 GGTTTTTTTAT-TCTAGATTTCTTTATTCTA
1 GGTTTTTCTATCT-TAGATTTCTTTATTCTA
*
73511838 GGTTTTTCTATCTTGGATTTCTTTATTC
1 GGTTTTTCTATCTTAGATTTCTTTATTC
73511866 GGTTTTCTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 24 0.96
31 1 0.04
ACGTcount: A:0.14, C:0.12, G:0.12, T:0.62
Consensus pattern (30 bp):
GGTTTTTCTATCTTAGATTTCTTTATTCTA
Found at i:73514396 original size:49 final size:49
Alignment explanation
Indices: 73514317--73514497 Score: 263
Period size: 49 Copynumber: 3.7 Consensus size: 49
73514307 ACTATTGTGA
*
73514317 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * * *
73514366 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAGAACT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
73514415 GTGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTATT
1 G-GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
73514465 GGTCACATGTGTAGTACTAAGTGCAGGCTACTA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTA
73514498 TGCATACCAG
Statistics
Matches: 113, Mismatches: 18, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
49 73 0.65
50 40 0.35
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:73514489 original size:99 final size:99
Alignment explanation
Indices: 73514318--73514505 Score: 340
Period size: 99 Copynumber: 1.9 Consensus size: 99
73514308 CTATTGTGAG
*
73514318 GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTAC
1 GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTAC
*
73514383 TAAGTGCAGGCTACTATGCGTACCCGAGAACTGT
66 TAAGTGCAGGCTACTATGCATACCCGAGAACTGT
* *
73514417 GTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTATTGGTCACATGTGTAGTAC
1 GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTAC
73514482 TAAGTGCAGGCTACTATGCATACC
66 TAAGTGCAGGCTACTATGCATACC
73514506 AGATAGCTTG
Statistics
Matches: 85, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
99 85 1.00
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.29
Consensus pattern (99 bp):
GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTAC
TAAGTGCAGGCTACTATGCATACCCGAGAACTGT
Found at i:73520888 original size:61 final size:61
Alignment explanation
Indices: 73520823--73520958 Score: 141
Period size: 63 Copynumber: 2.2 Consensus size: 61
73520813 AGCCGTGTTG
* * * *
73520823 CATGCTGTGTGTCAACTCTTGTAGGAACTA-ATTTATATAGTTTTACAACACACTTAGGGTA
1 CATGCTGTGTGT-AACCCGTGTAGGAACTACACTTATATAGTTTTACAACACACTTAGGGCA
* * *
73520884 CATGCCCATGTG-GTTACCCGTGTGGGAATTACACTTATATAGTTTTACAACACACTTAGGGCA
1 CATG--C-TGTGTGTAACCCGTGTAGGAACTACACTTATATAGTTTTACAACACACTTAGGGCA
*
73520947 CACGCTCGTGTG
1 CATGCT-GTGTG
73520959 GTTGCTCGTG
Statistics
Matches: 61, Mismatches: 8, Indels: 11
0.76 0.10 0.14
Matches are distributed among these distances:
60 1 0.02
61 8 0.13
62 13 0.21
63 35 0.57
64 4 0.07
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (61 bp):
CATGCTGTGTGTAACCCGTGTAGGAACTACACTTATATAGTTTTACAACACACTTAGGGCA
Found at i:73522073 original size:13 final size:13
Alignment explanation
Indices: 73522013--73522074 Score: 52
Period size: 13 Copynumber: 4.8 Consensus size: 13
73522003 CATTTATTTC
73522013 CATATAACCAATT
1 CATATAACCAATT
* * *
73522026 CTTATAATCATTT
1 CATATAACCAATT
*
73522039 CACATAACCAATT
1 CATATAACCAATT
** *
73522052 TGTACAACCAATT
1 CATATAACCAATT
*
73522065 GATATAACCA
1 CATATAACCA
73522075 TTCGTCATCC
Statistics
Matches: 35, Mismatches: 14, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
13 35 1.00
ACGTcount: A:0.42, C:0.23, G:0.03, T:0.32
Consensus pattern (13 bp):
CATATAACCAATT
Found at i:73522260 original size:45 final size:45
Alignment explanation
Indices: 73522175--73522331 Score: 181
Period size: 45 Copynumber: 3.5 Consensus size: 45
73522165 TGCCATAGTG
* * * * *
73522175 TCTTTCAACTATGGTCTTACACGTCTGAATCGCAAAGCCATAACG
1 TCTTTCAGCTATGGTCTTACTCGTCTGAATCACAATGCCATAACA
* * **
73522220 CCTTTTAGCTATGGTCTTACTCGTCTGAATCATGATGCCATAACA
1 TCTTTCAGCTATGGTCTTACTCGTCTGAATCACAATGCCATAACA
* * * *
73522265 TCTTTCAGCTATTGTTTTACCCATCTGAATCACAATGCCATAACA
1 TCTTTCAGCTATGGTCTTACTCGTCTGAATCACAATGCCATAACA
73522310 TCATTT-AGCTATGGTCTTACTC
1 TC-TTTCAGCTATGGTCTTACTC
73522332 TTTTCTGGGA
Statistics
Matches: 91, Mismatches: 20, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
45 88 0.97
46 3 0.03
ACGTcount: A:0.26, C:0.25, G:0.13, T:0.35
Consensus pattern (45 bp):
TCTTTCAGCTATGGTCTTACTCGTCTGAATCACAATGCCATAACA
Found at i:73522292 original size:90 final size:90
Alignment explanation
Indices: 73522160--73522373 Score: 234
Period size: 90 Copynumber: 2.4 Consensus size: 90
73522150 TTATTTTTGG
*** * * * *
73522160 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACACGTCTGAATCGCAAAGCCATAACGCCTTT
1 CATGATGCCATAACATCTTTCAACTATGGTCTTACACATCTGAATCACAAAGCCATAACACCATT
73522225 TAGCTATGGTCTTACTCGTCTGAAT
66 TAGCTATGGTCTTACTCGTCTGAAT
* * * * * *
73522250 CATGATGCCATAACATCTTTCAGCTATTGTTTTACCCATCTGAATCACAATGCCATAACATCATT
1 CATGATGCCATAACATCTTTCAACTATGGTCTTACACATCTGAATCACAAAGCCATAACACCATT
* *
73522315 TAGCTATGGTCTTACTCTTTTCTG--G
66 TAGCTATGGTCTTACTC--GTCTGAAT
* **
73522340 GATGATGCCATAATGTCTTTCAACTATGGTCTTA
1 CATGATGCCATAACATCTTTCAACTATGGTCTTA
73522374 TTCTTTTTCT
Statistics
Matches: 101, Mismatches: 21, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
90 97 0.96
92 4 0.04
ACGTcount: A:0.25, C:0.23, G:0.15, T:0.36
Consensus pattern (90 bp):
CATGATGCCATAACATCTTTCAACTATGGTCTTACACATCTGAATCACAAAGCCATAACACCATT
TAGCTATGGTCTTACTCGTCTGAAT
Found at i:73522348 original size:45 final size:46
Alignment explanation
Indices: 73522298--73522464 Score: 153
Period size: 45 Copynumber: 3.7 Consensus size: 46
73522288 TCTGAATCAC
*
73522298 AATGCCATAACATCATTT-AGCTATGGTCTTACTC-TTTTCTGGGAT
1 AATGCCATAACATC-TTTCAACTATGGTCTTACTCTTTTTCTGGGAT
* ** * *
73522343 GATGCCATAATGTCTTTCAACTATGGTCTTATTCTTTTTCTGGTAT
1 AATGCCATAACATCTTTCAACTATGGTCTTACTCTTTTTCTGGGAT
*** * *
73522389 AATGCCATAGTGTCTTTCAACTATGGTCTTA-T-TTATTTCCGGTAT
1 AATGCCATAACATCTTTCAACTATGGTCTTACTCTT-TTTCTGGGAT
* ** *
73522434 AGTGCCATAATGTCTTTCGACTATGGTCTTA
1 AATGCCATAACATCTTTCAACTATGGTCTTA
73522465 ATCATTTCCT
Statistics
Matches: 107, Mismatches: 12, Indels: 6
0.86 0.10 0.05
Matches are distributed among these distances:
44 5 0.05
45 63 0.59
46 39 0.36
ACGTcount: A:0.22, C:0.19, G:0.16, T:0.43
Consensus pattern (46 bp):
AATGCCATAACATCTTTCAACTATGGTCTTACTCTTTTTCTGGGAT
Found at i:73522403 original size:46 final size:46
Alignment explanation
Indices: 73522318--73522464 Score: 208
Period size: 45 Copynumber: 3.2 Consensus size: 46
73522308 CATCATTTAG
* * *
73522318 CTATGGTCTTACTC-TTTTCTGGGATGATGCCATAATGTCTTTCAA
1 CTATGGTCTTATTCTTTTTCTGGTATAATGCCATAATGTCTTTCAA
*
73522363 CTATGGTCTTATTCTTTTTCTGGTATAATGCCATAGTGTCTTTCAA
1 CTATGGTCTTATTCTTTTTCTGGTATAATGCCATAATGTCTTTCAA
* * * *
73522409 CTATGGTCTTATT-TATTTCCGGTATAGTGCCATAATGTCTTTCGA
1 CTATGGTCTTATTCTTTTTCTGGTATAATGCCATAATGTCTTTCAA
73522454 CTATGGTCTTA
1 CTATGGTCTTA
73522465 ATCATTTCCT
Statistics
Matches: 92, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
45 51 0.55
46 41 0.45
ACGTcount: A:0.20, C:0.18, G:0.17, T:0.45
Consensus pattern (46 bp):
CTATGGTCTTATTCTTTTTCTGGTATAATGCCATAATGTCTTTCAA
Found at i:73536511 original size:19 final size:19
Alignment explanation
Indices: 73536487--73536529 Score: 86
Period size: 19 Copynumber: 2.3 Consensus size: 19
73536477 CATGTGGGTA
73536487 TAAGTGAACGCAAGTATTT
1 TAAGTGAACGCAAGTATTT
73536506 TAAGTGAACGCAAGTATTT
1 TAAGTGAACGCAAGTATTT
73536525 TAAGT
1 TAAGT
73536530 TTATGGCATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.37, C:0.09, G:0.21, T:0.33
Consensus pattern (19 bp):
TAAGTGAACGCAAGTATTT
Found at i:73554041 original size:47 final size:48
Alignment explanation
Indices: 73553987--73554117 Score: 174
Period size: 47 Copynumber: 2.8 Consensus size: 48
73553977 AATAGATAAG
* * *
73553987 TACCTATACCATGGCCCGTAGCCAAATCAAGGTATCTTATC-CTGGAC
1 TACCTATACCATGGCCCGTAGCCAAATCAAGGTATCTCATCACTGAAA
* * * *
73554034 TACCTATACCAAGGGCCGTAGCCAAATCAAGGTAACTCCTCACTGAAA
1 TACCTATACCATGGCCCGTAGCCAAATCAAGGTATCTCATCACTGAAA
* *
73554082 TACCTATAACATGGCCCGTAGCCAAATCAAGTTATC
1 TACCTATACCATGGCCCGTAGCCAAATCAAGGTATC
73554118 ACTCACACCT
Statistics
Matches: 71, Mismatches: 12, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
47 36 0.51
48 35 0.49
ACGTcount: A:0.32, C:0.29, G:0.16, T:0.23
Consensus pattern (48 bp):
TACCTATACCATGGCCCGTAGCCAAATCAAGGTATCTCATCACTGAAA
Found at i:73557824 original size:43 final size:42
Alignment explanation
Indices: 73557769--73557927 Score: 142
Period size: 43 Copynumber: 3.7 Consensus size: 42
73557759 AACATATACA
73557769 ATGCCAACGTCCCAGACATGGTCTTACATGTAATCAAACATCG
1 ATGCCAACGTCCCAGACATGGTCTTACATGTAATCAAA-ATCG
* * * * * *
73557812 ATGCC-ACTGTCCCAGATAGGGTCTTACAAGAAATC-AGATACA
1 ATGCCAAC-GTCCCAGACATGGTCTTACATGTAATCAAAAT-CG
** * * *
73557854 ATGCCAATATCCCAGACATGGTCTTACACGTAAAACAGAAGTCG
1 ATGCCAACGTCCCAGACATGGTCTTACATGT-AATCA-AAATCG
* *
73557898 ATGCCAACGTCCCAGACGTGGTGTTACATG
1 ATGCCAACGTCCCAGACATGGTCTTACATG
73557928 AAATTAGATA
Statistics
Matches: 89, Mismatches: 21, Indels: 11
0.74 0.17 0.09
Matches are distributed among these distances:
41 2 0.02
42 27 0.30
43 32 0.36
44 26 0.29
45 2 0.02
ACGTcount: A:0.33, C:0.26, G:0.19, T:0.22
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACATGGTCTTACATGTAATCAAAATCG
Found at i:73566501 original size:14 final size:14
Alignment explanation
Indices: 73566484--73566511 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
73566474 ATGCTTGTCT
73566484 CATAAAATTAAAAG
1 CATAAAATTAAAAG
73566498 CATAAAATTAAAAG
1 CATAAAATTAAAAG
73566512 ACTCTGACTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.64, C:0.07, G:0.07, T:0.21
Consensus pattern (14 bp):
CATAAAATTAAAAG
Found at i:73583175 original size:68 final size:68
Alignment explanation
Indices: 73583066--73583206 Score: 264
Period size: 68 Copynumber: 2.1 Consensus size: 68
73583056 TCTTAAGTCT
* *
73583066 AGCATCATATAGTGTTAAATCATGCATCGTCTAATAGGTCATTATTATAACGCTTACGTACTCAT
1 AGCATCATATAGTGTAAAATCATGCATCGTCTAATAGGTCATTATCATAACGCTTACGTACTCAT
73583131 TCA
66 TCA
73583134 AGCATCATATAGTGTAAAATCATGCATCGTCTAATAGGTCATTATCATAACGCTTACGTACTCAT
1 AGCATCATATAGTGTAAAATCATGCATCGTCTAATAGGTCATTATCATAACGCTTACGTACTCAT
73583199 TCA
66 TCA
73583202 AGCAT
1 AGCAT
73583207 AGAACATATT
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
68 71 1.00
ACGTcount: A:0.33, C:0.20, G:0.13, T:0.33
Consensus pattern (68 bp):
AGCATCATATAGTGTAAAATCATGCATCGTCTAATAGGTCATTATCATAACGCTTACGTACTCAT
TCA
Found at i:73586511 original size:13 final size:13
Alignment explanation
Indices: 73586493--73586517 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
73586483 AGGCCATGTG
73586493 AAGGACACGGGCC
1 AAGGACACGGGCC
73586506 AAGGACACGGGC
1 AAGGACACGGGC
73586518 ATGTGTTCGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.28, G:0.40, T:0.00
Consensus pattern (13 bp):
AAGGACACGGGCC
Found at i:73600510 original size:50 final size:50
Alignment explanation
Indices: 73600450--73600545 Score: 165
Period size: 50 Copynumber: 1.9 Consensus size: 50
73600440 CCCTTTTCAC
*
73600450 TATTCGTATGAATATCGTACGTACCTGAGTCACTTAACTCATTCACTCAA
1 TATTCGTATGAATATCATACGTACCTGAGTCACTTAACTCATTCACTCAA
* *
73600500 TATTTGTATGAATCTCATACGTACCTGAGTCACTTAACTCATTCAC
1 TATTCGTATGAATATCATACGTACCTGAGTCACTTAACTCATTCAC
73600546 ACATTCTTTC
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
50 43 1.00
ACGTcount: A:0.29, C:0.24, G:0.11, T:0.35
Consensus pattern (50 bp):
TATTCGTATGAATATCATACGTACCTGAGTCACTTAACTCATTCACTCAA
Found at i:73600707 original size:43 final size:44
Alignment explanation
Indices: 73600638--73600752 Score: 153
Period size: 43 Copynumber: 2.7 Consensus size: 44
73600628 AATGGCATAT
* * *
73600638 CCCAGATATGGTCTTACATGTTATCACATAT-CGATGCCAATGC
1 CCCAGACATGGTCTTACATGTAATCACATATACAATGCCAATGC
** *
73600681 CCCAGACATGGTCTTACACATAATCACA-ATACAATGCCAATGT
1 CCCAGACATGGTCTTACATGTAATCACATATACAATGCCAATGC
*
73600724 CCAAGACATGGTCTTACATGTAATCACAT
1 CCCAGACATGGTCTTACATGTAATCACAT
73600753 CTCGGTAATC
Statistics
Matches: 61, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
42 2 0.03
43 59 0.97
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.27
Consensus pattern (44 bp):
CCCAGACATGGTCTTACATGTAATCACATATACAATGCCAATGC
Found at i:73602888 original size:42 final size:43
Alignment explanation
Indices: 73602836--73602933 Score: 162
Period size: 43 Copynumber: 2.3 Consensus size: 43
73602826 TACTATAGAA
* *
73602836 CATGAACTTTAGTGGCGC-TTTATCACAAATGCCGCTAAAGAG
1 CATGACCTTTAGCGGCGCTTTTATCACAAATGCCGCTAAAGAG
*
73602878 CATGACCTTTAGCGGCGCTTTTATCACAAATGCTGCTAAAGAG
1 CATGACCTTTAGCGGCGCTTTTATCACAAATGCCGCTAAAGAG
73602921 CATGACCTTTAGC
1 CATGACCTTTAGC
73602934 TCTTTAACGG
Statistics
Matches: 52, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
42 16 0.31
43 36 0.69
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (43 bp):
CATGACCTTTAGCGGCGCTTTTATCACAAATGCCGCTAAAGAG
Found at i:73603009 original size:93 final size:92
Alignment explanation
Indices: 73602849--73603026 Score: 214
Period size: 93 Copynumber: 1.9 Consensus size: 92
73602839 GAACTTTAGT
* * ** *
73602849 GGCGCTTTATCACAAATGCCGCTAAAGAGCATGACCTTTAGCGGCGCTTTTATCACAAATGCTGC
1 GGCGCTTTATCACAAACGCCGCTAAAGAGCATGACCTTTAGC-GAGCTTTTATCACAAACACCGC
*
73602914 TAAAGAGCATGACCTTTAGCTCTTTAAC
65 TAAAGAACATGACCTTTAGCTCTTTAAC
* * * * *
73602942 GGCGCTTTATCAACAAACGTCGTTATAGAGCATGACTTTTAGC-AGCTTTTCTTCACAAACACCG
1 GGCGCTTTATC-ACAAACGCCGCTAAAGAGCATGACCTTTAGCGAGCTTTT-ATCACAAACACCG
*
73603006 CTAAAGAACATGATCTTTAGC
64 CTAAAGAACATGACCTTTAGC
73603027 GACACTTTCA
Statistics
Matches: 71, Mismatches: 12, Indels: 4
0.82 0.14 0.05
Matches are distributed among these distances:
92 6 0.08
93 39 0.55
94 26 0.37
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (92 bp):
GGCGCTTTATCACAAACGCCGCTAAAGAGCATGACCTTTAGCGAGCTTTTATCACAAACACCGCT
AAAGAACATGACCTTTAGCTCTTTAAC
Found at i:73603383 original size:21 final size:21
Alignment explanation
Indices: 73603345--73603394 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
73603335 TTCTGCTCTG
*
73603345 CTCTGCTTCCCTCGCTGCTAC
1 CTCTGCTTCCCTCACTGCTAC
* *
73603366 CTCTGCTTCCCTTACTGCTGC
1 CTCTGCTTCCCTCACTGCTAC
*
73603387 CTTTGCTT
1 CTCTGCTT
73603395 TAAGTTTTAG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.04, C:0.42, G:0.14, T:0.40
Consensus pattern (21 bp):
CTCTGCTTCCCTCACTGCTAC
Found at i:73607113 original size:31 final size:31
Alignment explanation
Indices: 73607040--73607179 Score: 246
Period size: 31 Copynumber: 4.5 Consensus size: 31
73607030 TTTAACGGTT
73607040 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
* *
73607071 ACT-TGCCGAAGCCATTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
73607101 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
73607132 ACTGGGCCGAAGCCTTTTCGTAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
73607163 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
73607180 ACTGTAAACG
Statistics
Matches: 103, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
30 28 0.27
31 75 0.73
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.29
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Done.