Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 214 of 295
Found at i:73607252 original size:42 final size:42
Alignment explanation
Indices: 73607205--73607294 Score: 162
Period size: 42 Copynumber: 2.1 Consensus size: 42
73607195 GCCCTTAGGC
*
73607205 CCATTTCAATATCACATGTAATGTCAATGAATGTATGCAAGA
1 CCATTTCAATATCACATGTAATGTCAATGAATATATGCAAGA
*
73607247 CCATTTCAATATCACATGTAATGTCAATGAATATATGCAAGC
1 CCATTTCAATATCACATGTAATGTCAATGAATATATGCAAGA
73607289 CCATTT
1 CCATTT
73607295 GGGGAGACTA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.37, C:0.19, G:0.12, T:0.32
Consensus pattern (42 bp):
CCATTTCAATATCACATGTAATGTCAATGAATATATGCAAGA
Found at i:73607456 original size:24 final size:24
Alignment explanation
Indices: 73607429--73607512 Score: 71
Period size: 25 Copynumber: 3.4 Consensus size: 24
73607419 CTGGAGGCCT
*
73607429 AGCCTCTTTTAAT-AAGTGGGGCAA
1 AGCC-CTTTTAATAAACTGGGGCAA
*
73607453 AGCCCTTTCTGATAAACTGGGGCAA
1 AGCCCTTT-TAATAAACTGGGGCAA
* ** * *
73607478 AACCCTTTTCGGTAAACTAGGGCAG
1 AGCCCTTTT-AATAAACTGGGGCAA
73607503 AGCCCTTTTA
1 AGCCCTTTTA
73607513 GCACTTCCTC
Statistics
Matches: 49, Mismatches: 8, Indels: 6
0.78 0.13 0.10
Matches are distributed among these distances:
23 4 0.08
24 8 0.16
25 37 0.76
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (24 bp):
AGCCCTTTTAATAAACTGGGGCAA
Found at i:73607477 original size:25 final size:25
Alignment explanation
Indices: 73607445--73607511 Score: 82
Period size: 25 Copynumber: 2.7 Consensus size: 25
73607435 TTTTAATAAG
73607445 TGGGGCAAAGCCC-TTTCTGATAAAC
1 TGGGGCAAAGCCCTTTTC-GATAAAC
* *
73607470 TGGGGCAAAACCCTTTTCGGTAAAC
1 TGGGGCAAAGCCCTTTTCGATAAAC
* *
73607495 TAGGGCAGAGCCCTTTT
1 TGGGGCAAAGCCCTTTT
73607512 AGCACTTCCT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
25 32 0.89
26 4 0.11
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (25 bp):
TGGGGCAAAGCCCTTTTCGATAAAC
Found at i:73608545 original size:27 final size:27
Alignment explanation
Indices: 73608445--73608574 Score: 122
Period size: 27 Copynumber: 4.7 Consensus size: 27
73608435 ATCTACAAAC
*
73608445 CAAGGGTATTTC-AGTAATTTTGTAAAC
1 CAAGGGTATTTCTA-TAATTTTGTAAAT
*
73608472 CAATGGTATTTCTATAATTTT-TAGAAAGT
1 CAAGGGTATTTCTATAATTTTGT--AAA-T
73608501 CAAGGGTATTTCTATAATTTTGTAAAT
1 CAAGGGTATTTCTATAATTTTGTAAAT
* **
73608528 CAAGGGTATTT-TGGTAATTTTACAAAT
1 CAAGGGTATTTCT-ATAATTTTGTAAAT
** *
73608555 TGAGGGTATTTCAATAATTT
1 CAAGGGTATTTCTATAATTT
73608575 CACAAACCAG
Statistics
Matches: 86, Mismatches: 10, Indels: 14
0.78 0.09 0.13
Matches are distributed among these distances:
26 2 0.02
27 56 0.65
28 7 0.08
29 20 0.23
30 1 0.01
ACGTcount: A:0.33, C:0.08, G:0.17, T:0.42
Consensus pattern (27 bp):
CAAGGGTATTTCTATAATTTTGTAAAT
Found at i:73608546 original size:56 final size:53
Alignment explanation
Indices: 73608438--73608606 Score: 155
Period size: 54 Copynumber: 3.1 Consensus size: 53
73608428 TCGATAAATC
* * *
73608438 TACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCT-ATAATTTT
1 TACAAATCAAGGGTATTTCA-TAATTTTGTAAA-CAAGGGTATTT-TGGTAATTTT
*
73608493 TAGAAAGTCAAGGGTATTTCTATAATTTTGTAAATCAAGGGTATTTTGGTAA-TTT
1 TACAAA-TCAAGGGTATTTC-ATAATTTTGTAAA-CAAGGGTATTTTGGTAATTTT
** *** *
73608548 TACAAATTGAGGGTATTTCAATAATTTCACAAACCAGTGGTATTTTGGTAA-TTT
1 TACAAATCAAGGGTATTTC-ATAATTTTGTAAACAAG-GGTATTTTGGTAATTTT
73608602 TACAA
1 TACAA
73608607 CTAGGGGTAT
Statistics
Matches: 97, Mismatches: 13, Indels: 9
0.82 0.11 0.08
Matches are distributed among these distances:
53 3 0.03
54 42 0.43
55 14 0.14
56 37 0.38
57 1 0.01
ACGTcount: A:0.34, C:0.10, G:0.16, T:0.40
Consensus pattern (53 bp):
TACAAATCAAGGGTATTTCATAATTTTGTAAACAAGGGTATTTTGGTAATTTT
Found at i:73608621 original size:26 final size:26
Alignment explanation
Indices: 73608531--73608626 Score: 102
Period size: 27 Copynumber: 3.6 Consensus size: 26
73608521 TGTAAATCAA
* *
73608531 GGGTATTTTGGTAATTTTACAAATTG
1 GGGTATTTTGGTAATTTTACAACTAG
*** * *
73608557 AGGGTATTTCAATAATTTCACAAACCAG
1 -GGGTATTTTGGTAATTTTAC-AACTAG
*
73608585 TGGTATTTTGGTAATTTTACAACTAG
1 GGGTATTTTGGTAATTTTACAACTAG
73608611 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
73608627 CTACCCTACA
Statistics
Matches: 54, Mismatches: 14, Indels: 3
0.76 0.20 0.04
Matches are distributed among these distances:
26 20 0.37
27 31 0.57
28 3 0.06
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTTACAACTAG
Found at i:73608706 original size:27 final size:27
Alignment explanation
Indices: 73608658--73608715 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
73608648 GAAATTTCTC
*** *
73608658 AATCGAAGGTAAAACGGTAATTTTGTA
1 AATCGAAGGTAAAACAACAATTCTGTA
*
73608685 AATCGAGGGTAAAACAACAATTCTGTA
1 AATCGAAGGTAAAACAACAATTCTGTA
73608712 AATC
1 AATC
73608716 AAATGTCAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.43, C:0.12, G:0.19, T:0.26
Consensus pattern (27 bp):
AATCGAAGGTAAAACAACAATTCTGTA
Found at i:73611447 original size:121 final size:121
Alignment explanation
Indices: 73611226--73611448 Score: 283
Period size: 121 Copynumber: 1.8 Consensus size: 121
73611216 TGGAATCCCT
* * * * *
73611226 AAATCCCCAAATCAGCCACACGGTCGTGTGGCCAGGCCGTGTGACTTCAAATCTCTGAAACCCTA
1 AAATCCCCAAATCAGCCACACAGTCATGTAGCCAGGCCGTGTAACTTCAAATCTATGAAACCCTA
* * *
73611291 GTTCCCAAACCCACACGTCCGTGTGCCAAATGGACACAGTCGTGTGAATTCTAACA
66 ATTCCCAAACCCACACGTCCGTCTGCCAAAGGGACACAGTCGTGTGAATTCTAACA
*
73611347 AAATCCCCAAATC-GACCACACAGTCATGTAGCCAGGCTGTGTAAC-TCTAAATCTATGAAACCC
1 AAATCCCCAAATCAG-CCACACAGTCATGTAGCCAGGCCGTGTAACTTC-AAATCTATGAAACCC
* *
73611410 TAATTCCTAAACCCATACAC-T-CGTCTGCCCAAGGGACAC
64 TAATTCCCAAACCC--ACACGTCCGTCTGCCAAAGGGACAC
73611449 GACCATGTGG
Statistics
Matches: 87, Mismatches: 11, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
120 3 0.03
121 79 0.91
122 1 0.01
123 4 0.05
ACGTcount: A:0.30, C:0.32, G:0.17, T:0.21
Consensus pattern (121 bp):
AAATCCCCAAATCAGCCACACAGTCATGTAGCCAGGCCGTGTAACTTCAAATCTATGAAACCCTA
ATTCCCAAACCCACACGTCCGTCTGCCAAAGGGACACAGTCGTGTGAATTCTAACA
Found at i:73612446 original size:44 final size:45
Alignment explanation
Indices: 73612365--73612457 Score: 118
Period size: 44 Copynumber: 2.1 Consensus size: 45
73612355 TATAGCGGCA
* *
73612365 TTTTTTAAAAAAGCACCGCTATAGGCCAAGAACTTTAGCGGCGTT
1 TTTTTTAAAAAAGCACCGCTATAGACCAAGAACTTTAGCGGCGCT
* * *
73612410 TTTTTTAAAAAA-CGCCGCTATAGACC-TGTACTTTTAGCGGCGCT
1 TTTTTTAAAAAAGCACCGCTATAGACCAAGAAC-TTTAGCGGCGCT
73612454 TTTT
1 TTTT
73612458 ATAGACCTGT
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
43 3 0.07
44 27 0.64
45 12 0.29
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.34
Consensus pattern (45 bp):
TTTTTTAAAAAAGCACCGCTATAGACCAAGAACTTTAGCGGCGCT
Found at i:73612460 original size:29 final size:29
Alignment explanation
Indices: 73612428--73612485 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
73612418 AAAACGCCGC
73612428 TATAGACCTGTACTTTTAGCGGCGCTTTT
1 TATAGACCTGTACTTTTAGCGGCGCTTTT
73612457 TATAGACCTGTACTTTTAGCGGCGCTTTT
1 TATAGACCTGTACTTTTAGCGGCGCTTTT
73612486 GTAAAAAAGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.17, C:0.21, G:0.21, T:0.41
Consensus pattern (29 bp):
TATAGACCTGTACTTTTAGCGGCGCTTTT
Found at i:73612507 original size:44 final size:43
Alignment explanation
Indices: 73612457--73612633 Score: 241
Period size: 44 Copynumber: 4.0 Consensus size: 43
73612447 CGGCGCTTTT
73612457 TATAGACCTGTACTTTTAGCGGCGCTTTTGTAAAAAAGCGCCGC
1 TATAGACCTGTACTTTTAGCGGCGCTTTTGTAAAAAA-CGCCGC
* * *
73612501 TATAGACCAAG-AGC-TTTAGCGGCGCTTCTGTAAAAAAACGCCAC
1 TATAGACC-TGTA-CTTTTAGCGGCGCTTTTGT-AAAAAACGCCGC
*
73612545 TATAGACCTGTACTTTTAGCGGCGCTTTTGTAGAAAAATGCCGC
1 TATAGACCTGTACTTTTAGCGGCGCTTTTGTA-AAAAACGCCGC
* *
73612589 TATAGACCTGTACTTTTAGCGGCGCTTTTGCAAAAAATGCCGC
1 TATAGACCTGTACTTTTAGCGGCGCTTTTGTAAAAAACGCCGC
73612632 TA
1 TA
73612634 ATTTTCCCAG
Statistics
Matches: 119, Mismatches: 8, Indels: 13
0.85 0.06 0.09
Matches are distributed among these distances:
43 16 0.13
44 95 0.80
45 8 0.07
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (43 bp):
TATAGACCTGTACTTTTAGCGGCGCTTTTGTAAAAAACGCCGC
Found at i:73612549 original size:117 final size:116
Alignment explanation
Indices: 73612357--73612573 Score: 335
Period size: 117 Copynumber: 1.9 Consensus size: 116
73612347 CCAGGACCTA
* * * * * *
73612357 TAGCGGCATTTTTTAAAAAAGCACCGCTATAGGCCAAGAACTTTAGCGGCGTTTTTTTTAAAAAA
1 TAGCGGCATTTTGTAAAAAAGCACCGCTATAGACCAAGAACTTTAGCGGCGCTTCTGTAAAAAAA
*
73612422 CGCCGCTATAGACCTGTACTTTTAGCGGCGCTTTTTATAGACCTGTACTTT
66 CGCCACTATAGACCTGTACTTTTAGCGGCGCTTTTTATAGACCTGTACTTT
* * *
73612473 TAGCGGCGCTTTTGTAAAAAAGCGCCGCTATAGACCAAGAGCTTTAGCGGCGCTTCTGTAAAAAA
1 TAGCGGC-ATTTTGTAAAAAAGCACCGCTATAGACCAAGAACTTTAGCGGCGCTTCTGTAAAAAA
73612538 ACGCCACTATAGACCTGTACTTTTAGCGGCGCTTTT
65 ACGCCACTATAGACCTGTACTTTTAGCGGCGCTTTT
73612574 GTAGAAAAAT
Statistics
Matches: 90, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
116 7 0.08
117 83 0.92
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (116 bp):
TAGCGGCATTTTGTAAAAAAGCACCGCTATAGACCAAGAACTTTAGCGGCGCTTCTGTAAAAAAA
CGCCACTATAGACCTGTACTTTTAGCGGCGCTTTTTATAGACCTGTACTTT
Found at i:73612955 original size:21 final size:21
Alignment explanation
Indices: 73612931--73612975 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
73612921 TCCTGTTCTG
73612931 CTCCGCCTCCCTCGCTGCTGC
1 CTCCGCCTCCCTCGCTGCTGC
73612952 CTCCGCCTCCCTCGCTGCTGC
1 CTCCGCCTCCCTCGCTGCTGC
73612973 CTC
1 CTC
73612976 TGCTCTAAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.00, C:0.58, G:0.18, T:0.24
Consensus pattern (21 bp):
CTCCGCCTCCCTCGCTGCTGC
Found at i:73613566 original size:18 final size:18
Alignment explanation
Indices: 73613534--73613571 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
73613524 TACAATATAG
73613534 TAGTAAAAATATTATTTAA
1 TAGTAAAAATATTA-TTAA
*
73613553 TAGTAAAAA-GTTATTAA
1 TAGTAAAAATATTATTAA
73613570 TA
1 TA
73613572 CTTGATAGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 3 0.17
19 9 0.50
ACGTcount: A:0.53, C:0.00, G:0.08, T:0.39
Consensus pattern (18 bp):
TAGTAAAAATATTATTAA
Found at i:73619157 original size:21 final size:21
Alignment explanation
Indices: 73619116--73619154 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
73619106 AAATTAATTC
*
73619116 ATACTTAAGTTGAATCAAATA
1 ATACTTAAGTTGAACCAAATA
73619137 ATACTTAA-TTGAACCAAA
1 ATACTTAAGTTGAACCAAA
73619155 ATATAAAAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.49, C:0.13, G:0.08, T:0.31
Consensus pattern (21 bp):
ATACTTAAGTTGAACCAAATA
Found at i:73624317 original size:15 final size:15
Alignment explanation
Indices: 73624297--73624327 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
73624287 CAAATAATAA
*
73624297 TATATATATTTATCT
1 TATATACATTTATCT
73624312 TATATACATTTATCT
1 TATATACATTTATCT
73624327 T
1 T
73624328 CTAAATTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.32, C:0.10, G:0.00, T:0.58
Consensus pattern (15 bp):
TATATACATTTATCT
Found at i:73624390 original size:22 final size:22
Alignment explanation
Indices: 73624360--73624401 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
73624350 ACTCTAAATT
73624360 TAAAACCCTAAACCTGAGACTC
1 TAAAACCCTAAACCTGAGACTC
* *
73624382 TAAACCCCTAAACCTTAGAC
1 TAAAACCCTAAACCTGAGAC
73624402 CACAAACACA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.40, C:0.33, G:0.07, T:0.19
Consensus pattern (22 bp):
TAAAACCCTAAACCTGAGACTC
Found at i:73624731 original size:25 final size:25
Alignment explanation
Indices: 73624696--73624747 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
73624686 TTTCTAGCTA
73624696 ATAGTTAAACAAATGCTAATTCCAC
1 ATAGTTAAACAAATGCTAATTCCAC
* *
73624721 ATAGTTCAACAAATTCTAATTCCAC
1 ATAGTTAAACAAATGCTAATTCCAC
73624746 AT
1 AT
73624748 TCAAAATCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.42, C:0.21, G:0.06, T:0.31
Consensus pattern (25 bp):
ATAGTTAAACAAATGCTAATTCCAC
Found at i:73624947 original size:36 final size:38
Alignment explanation
Indices: 73624906--73624981 Score: 102
Period size: 39 Copynumber: 2.0 Consensus size: 38
73624896 CTTCAAATAC
* * *
73624906 TAGTTAACTCCTAAACC-G-TAAATCTTAAACCATATA
1 TAGTTAACTCATAAACCTGCTAAACCCTAAACCATATA
73624942 TAGTTAACTCATAAACCTGCTTAAACCCTAAACCATATA
1 TAGTTAACTCATAAACCTGC-TAAACCCTAAACCATATA
73624981 T
1 T
73624982 CTTAAACTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
36 16 0.47
37 1 0.03
39 17 0.50
ACGTcount: A:0.41, C:0.24, G:0.05, T:0.30
Consensus pattern (38 bp):
TAGTTAACTCATAAACCTGCTAAACCCTAAACCATATA
Found at i:73625216 original size:41 final size:41
Alignment explanation
Indices: 73625159--73625376 Score: 323
Period size: 41 Copynumber: 5.4 Consensus size: 41
73625149 GGTTTATGAC
*
73625159 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGATCTGGT
1 TTTTAGCGGCGTTTTACCCAAAGCGCCGCTAATGATCTGGT
* * *
73625200 TTTTACCGGCATTTTACCTAAAGCGCCGCTAATGATCTGGT
1 TTTTAGCGGCGTTTTACCCAAAGCGCCGCTAATGATCTGGT
* *
73625241 TTTTACCGGCGTTTTACCCAAAGCGCCAC-AATGATCTGGT
1 TTTTAGCGGCGTTTTACCCAAAGCGCCGCTAATGATCTGGT
73625281 TTTTAGCGGCGTTTTACCCAAAGCGCCGCTAATGATCTGGT
1 TTTTAGCGGCGTTTTACCCAAAGCGCCGCTAATGATCTGGT
* * ** *
73625322 TTTTAGCGGCGTTTTACCTAAAGCGCCACTAATTCTCT-AT
1 TTTTAGCGGCGTTTTACCCAAAGCGCCGCTAATGATCTGGT
73625362 TTTTAGCGGCGTTTT
1 TTTTAGCGGCGTTTT
73625377 TTACTAAAAC
Statistics
Matches: 163, Mismatches: 13, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
40 54 0.33
41 109 0.67
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.34
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCCAAAGCGCCGCTAATGATCTGGT
Found at i:73625417 original size:81 final size:82
Alignment explanation
Indices: 73625159--73625376 Score: 332
Period size: 81 Copynumber: 2.7 Consensus size: 82
73625149 GGTTTATGAC
* * *
73625159 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGATCTGGTTTTTACCGGCATTTTACCTAAAGC
1 TTTTAGCGGCGTTTTACCAAAAGCGCCACTAATGATCTGGTTTTTAGCGGCGTTTTACCTAAAGC
73625224 GCCGCTAATGATCTGGT
66 GCCGCTAATGATCTGGT
* * *
73625241 TTTTACCGGCGTTTTACCCAAAGCGCCAC-AATGATCTGGTTTTTAGCGGCGTTTTACCCAAAGC
1 TTTTAGCGGCGTTTTACCAAAAGCGCCACTAATGATCTGGTTTTTAGCGGCGTTTTACCTAAAGC
73625305 GCCGCTAATGATCTGGT
66 GCCGCTAATGATCTGGT
* ** *
73625322 TTTTAGCGGCGTTTTACCTAAAGCGCCACTAATTCTCT-ATTTTTAGCGGCGTTTT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCACTAATGATCTGGTTTTTAGCGGCGTTTT
73625377 TTACTAAAAC
Statistics
Matches: 124, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
81 92 0.74
82 32 0.26
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.34
Consensus pattern (82 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCACTAATGATCTGGTTTTTAGCGGCGTTTTACCTAAAGC
GCCGCTAATGATCTGGT
Found at i:73631495 original size:9 final size:9
Alignment explanation
Indices: 73631478--73631758 Score: 125
Period size: 9 Copynumber: 31.0 Consensus size: 9
73631468 GAAGTATAAT
*
73631478 TAAGCTATG
1 TAAGTTATG
73631487 TAAGTTATG
1 TAAGTTATG
* * *
73631496 ATATGATATA
1 -TAAGTTATG
*
73631506 T-ATTTATG
1 TAAGTTATG
73631514 T-A-TTATG
1 TAAGTTATG
73631521 TAAGTTATG
1 TAAGTTATG
73631530 TAAGTTATG
1 TAAGTTATG
73631539 TGAA-TTATG
1 T-AAGTTATG
73631548 TAAGTTATG
1 TAAGTTATG
*
73631557 --A-TATATA
1 TAAGT-TATG
73631564 TAAGTTAT-
1 TAAGTTATG
73631572 TAAGTTATG
1 TAAGTTATG
* *
73631581 TATGTAATG
1 TAAGTTATG
*
73631590 TGAGTTATG
1 TAAGTTATG
73631599 TAAGTTATG
1 TAAGTTATG
* *
73631608 ATATGATATATA
1 -TAAG-T-TATG
73631620 TAAGTTAT-
1 TAAGTTATG
*
73631628 TAAGTTAAG
1 TAAGTTATG
* *
73631637 ATCCAAAGTTTTTT
1 -T---AAG-TTATG
* *
73631651 TAA-TTCTT
1 TAAGTTATG
*
73631659 TAAAGTTATA
1 T-AAGTTATG
* *
73631669 TAAATTATA
1 TAAGTTATG
*
73631678 TAATTTATG
1 TAAGTTATG
*
73631687 TAAGTTTTG
1 TAAGTTATG
* * *
73631696 ATATGATATA
1 -TAAGTTATG
*
73631706 T-ATTTATG
1 TAAGTTATG
73631714 TAAGTTATG
1 TAAGTTATG
*
73631723 TAAATTATG
1 TAAGTTATG
*
73631732 CAAGTTATG
1 TAAGTTATG
73631741 TAAGTTATG
1 TAAGTTATG
73631750 TAAGTTATG
1 TAAGTTATG
73631759 ATATATATTT
Statistics
Matches: 206, Mismatches: 43, Indels: 46
0.70 0.15 0.16
Matches are distributed among these distances:
6 1 0.00
7 10 0.05
8 32 0.16
9 125 0.61
10 25 0.12
11 4 0.02
12 3 0.01
13 4 0.02
14 2 0.01
ACGTcount: A:0.36, C:0.02, G:0.16, T:0.46
Consensus pattern (9 bp):
TAAGTTATG
Found at i:73631591 original size:51 final size:53
Alignment explanation
Indices: 73631516--73631617 Score: 163
Period size: 51 Copynumber: 2.0 Consensus size: 53
73631506 TATTTATGTA
*
73631516 TTATGTAAGTTATGTAAGTTATGTGAATTATGTAAGTTATGATAT-ATATAAG
1 TTATGTAAGTTATGTAAGTAATGTGAATTATGTAAGTTATGATATGATATAAG
* *
73631568 TTAT-TAAGTTATGTATGTAATGTGAGTTATGTAAGTTATGATATGATATA
1 TTATGTAAGTTATGTAAGTAATGTGAATTATGTAAGTTATGATATGATATA
73631618 TATAAGTTAT
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
51 37 0.80
52 9 0.20
ACGTcount: A:0.35, C:0.00, G:0.20, T:0.45
Consensus pattern (53 bp):
TTATGTAAGTTATGTAAGTAATGTGAATTATGTAAGTTATGATATGATATAAG
Found at i:73631613 original size:56 final size:56
Alignment explanation
Indices: 73631483--73631634 Score: 188
Period size: 56 Copynumber: 2.7 Consensus size: 56
73631473 ATAATTAAGC
* *
73631483 TATGTAAGTTATGATATGATATATATTTATGTATTATGTAAGTTATGTAAGTTATGTGAAT
1 TATGTAAGTTATGATATGATATATA--TAAG--TTAT-TAAGTTATGTAAGTAATGTGAAT
* *
73631544 TATGTAAG---T--TATGATATATATAAGTTATTAAGTTATGTATGTAATGTGAGT
1 TATGTAAGTTATGATATGATATATATAAGTTATTAAGTTATGTAAGTAATGTGAAT
73631595 TATGTAAGTTATGATATGATATATATAAGTTATTAAGTTA
1 TATGTAAGTTATGATATGATATATATAAGTTATTAAGTTA
73631635 AGATCCAAAG
Statistics
Matches: 82, Mismatches: 4, Indels: 15
0.81 0.04 0.15
Matches are distributed among these distances:
51 28 0.34
52 4 0.05
54 4 0.05
56 37 0.45
58 1 0.01
61 8 0.10
ACGTcount: A:0.36, C:0.00, G:0.18, T:0.46
Consensus pattern (56 bp):
TATGTAAGTTATGATATGATATATATAAGTTATTAAGTTATGTAAGTAATGTGAAT
Found at i:73631691 original size:27 final size:28
Alignment explanation
Indices: 73631661--73631775 Score: 112
Period size: 27 Copynumber: 4.2 Consensus size: 28
73631651 TAATTCTTTA
*
73631661 AAGTTATATAAATTATATA-ATTTATGT
1 AAGTTATGTAAATTATATATATTTATGT
* * *
73631688 AAGTTTTG-ATATGATATATATTTATGT
1 AAGTTATGTAAATTATATATATTTATGT
** *
73631715 AAGTTATGTAAATTATGCA-AGTTATGT
1 AAGTTATGTAAATTATATATATTTATGT
*
73631742 AAGTTATGTAAGTTATGATATATATT-TGT
1 AAGTTATGTAAATTAT-ATATAT-TTATGT
73631771 AAGTT
1 AAGTT
73631776 TTAAAAACAT
Statistics
Matches: 69, Mismatches: 14, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
26 8 0.12
27 43 0.62
28 7 0.10
29 9 0.13
30 2 0.03
ACGTcount: A:0.37, C:0.01, G:0.15, T:0.47
Consensus pattern (28 bp):
AAGTTATGTAAATTATATATATTTATGT
Found at i:73631956 original size:16 final size:16
Alignment explanation
Indices: 73631937--73631970 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
73631927 AAATATTAAA
*
73631937 TATTAAAATCAAACAT
1 TATTAAAATCAAAAAT
*
73631953 TATTAATATCAAAAAT
1 TATTAAAATCAAAAAT
73631969 TA
1 TA
73631971 GTTAGTATTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.09, G:0.00, T:0.35
Consensus pattern (16 bp):
TATTAAAATCAAAAAT
Found at i:73634489 original size:48 final size:48
Alignment explanation
Indices: 73634415--73634581 Score: 253
Period size: 48 Copynumber: 3.5 Consensus size: 48
73634405 GCCTCATGTT
* *
73634415 GATGCCATGTCCTAAACATGGTCTTACACTGGCTCACATAACGATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACGATGCC
* * *
73634463 GAAGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACAATGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACGATGCC
* *
73634511 GATGCCATGTCCCACACATGGTCTTACACTAGCTCACATAACGATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACGATGCC
* *
73634559 GATGTCATGTCCCAGATATGGTC
1 GATGCCATGTCCCAGACATGGTC
73634582 CTATGATACA
Statistics
Matches: 106, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 106 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACGATGCC
Found at i:73637753 original size:27 final size:28
Alignment explanation
Indices: 73637684--73637755 Score: 69
Period size: 27 Copynumber: 2.6 Consensus size: 28
73637674 TATTAAAGGA
* * *
73637684 AAATTAAATAAAAAGTACTTAATTAAGAT
1 AAATAAAATAAAAAGTAC-AAATTAAAAT
73637713 AAATAAAGAT-AAAAGTA-AAATTAAAAAT
1 AAATAAA-ATAAAAAGTACAAATT-AAAAT
73637741 AAA-AAAATAAAAAGT
1 AAATAAAATAAAAAGT
73637756 TTTTCAACAT
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
26 2 0.05
27 13 0.35
28 7 0.19
29 13 0.35
30 2 0.05
ACGTcount: A:0.68, C:0.01, G:0.07, T:0.24
Consensus pattern (28 bp):
AAATAAAATAAAAAGTACAAATTAAAAT
Found at i:73648016 original size:14 final size:14
Alignment explanation
Indices: 73647994--73648081 Score: 61
Period size: 14 Copynumber: 6.4 Consensus size: 14
73647984 TTTTAACACC
*
73647994 CTAAACCATAAACG
1 CTAAACCATAAACA
* *
73648008 CTAAGCCATTAACA
1 CTAAACCATAAACA
* *
73648022 CTAAATCATAAACC
1 CTAAACCATAAACA
* **
73648036 CTAAACCTTAAATT
1 CTAAACCATAAACA
*
73648050 CCAAACCATAAAC-
1 CTAAACCATAAACA
* * *
73648063 CTACACCCTAAACC
1 CTAAACCATAAACA
73648077 CTAAA
1 CTAAA
73648082 TATGTGTCTT
Statistics
Matches: 55, Mismatches: 18, Indels: 2
0.73 0.24 0.03
Matches are distributed among these distances:
13 10 0.18
14 45 0.82
ACGTcount: A:0.47, C:0.32, G:0.02, T:0.19
Consensus pattern (14 bp):
CTAAACCATAAACA
Found at i:73648040 original size:7 final size:7
Alignment explanation
Indices: 73647991--73648081 Score: 51
Period size: 7 Copynumber: 13.1 Consensus size: 7
73647981 TGTTTTTAAC
73647991 ACCCTAA
1 ACCCTAA
*
73647998 ACCATAA
1 ACCCTAA
*
73648005 ACGCTAA
1 ACCCTAA
* * *
73648012 GCCATTA
1 ACCCTAA
*
73648019 ACACTAA
1 ACCCTAA
* *
73648026 ATCATAA
1 ACCCTAA
73648033 ACCCTAA
1 ACCCTAA
*
73648040 ACCTTAA
1 ACCCTAA
*
73648047 ATTCC-AA
1 A-CCCTAA
*
73648054 ACCATAA
1 ACCCTAA
*
73648061 A-CCTAC
1 ACCCTAA
73648067 ACCCTAA
1 ACCCTAA
73648074 ACCCTAA
1 ACCCTAA
73648081 A
1 A
73648082 TATGTGTCTT
Statistics
Matches: 57, Mismatches: 24, Indels: 6
0.66 0.28 0.07
Matches are distributed among these distances:
6 5 0.09
7 51 0.89
8 1 0.02
ACGTcount: A:0.46, C:0.33, G:0.02, T:0.19
Consensus pattern (7 bp):
ACCCTAA
Found at i:73648645 original size:155 final size:156
Alignment explanation
Indices: 73648349--73648683 Score: 366
Period size: 155 Copynumber: 2.2 Consensus size: 156
73648339 TTTAACACCC
* * *
73648349 CTAATGCCACTAAAGCTCAACAACAAACAACGTCCTTTTGCTCAACTTTTTTGCGACGTTTTTCG
1 CTAATGCCACTAAAGCTCAACAACAAAAAACGTCATTTTGCTCAAATTTTTTGCGACGTTTTTCG
* *
73648414 AAAAGCACCGCTAATGCTCAATCTATAGCGGCGTTTTCAACAAGCGCTACTAATTCTCGAATCCA
66 AAAAGCACCACTAATGCTCAACCTATAGCGGCGTTTTCAACAAGCGCTA-TAATTCTCGAATCCA
73648479 TTACTGCA-TTTTTTAAAAAGCGAC-G-
130 TTACTGCATTTTTTTAAAAAGCG-CTGA
*
73648504 CTAATGCCACTAAAGCTCAACAA-AAAAAGACGTCATTTTGCTCAAAATTTTTATG-G-GGTTTT
1 CTAATGCCACTAAAGCTCAACAACAAAAA-ACGTCATTTTGCTC-AAATTTTT-TGCGACGTTTT
* * ** * * * *
73648566 TTGAATAGTGCCACTAATGCTCGACCTATAGTGGTGTTTTTCAACAAGCATCGT-TAATTCTCG-
63 TCGAAAAGCACCACTAATGCTCAACCTATAGCGGCG-TTTTCAACAAGC-GC-TATAATTCTCGA
* * *
73648629 ATCTATT-GTAGTATTTTTTTAAAAAGCGCTGA
125 ATCCATTACT-GCATTTTTTTAAAAAGCGCTGA
73648661 C-AATGCCACTAAAGCTCAACAAC
1 CTAATGCCACTAAAGCTCAACAAC
73648684 TTTTGCTAAA
Statistics
Matches: 152, Mismatches: 17, Indels: 20
0.80 0.09 0.11
Matches are distributed among these distances:
154 5 0.03
155 77 0.51
156 65 0.43
157 4 0.03
158 1 0.01
ACGTcount: A:0.31, C:0.22, G:0.15, T:0.31
Consensus pattern (156 bp):
CTAATGCCACTAAAGCTCAACAACAAAAAACGTCATTTTGCTCAAATTTTTTGCGACGTTTTTCG
AAAAGCACCACTAATGCTCAACCTATAGCGGCGTTTTCAACAAGCGCTATAATTCTCGAATCCAT
TACTGCATTTTTTTAAAAAGCGCTGA
Found at i:73654585 original size:48 final size:48
Alignment explanation
Indices: 73654514--73654619 Score: 176
Period size: 48 Copynumber: 2.2 Consensus size: 48
73654504 AGATAAATAT
* * *
73654514 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
73654562 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
73654610 ATGTGTATAT
1 ATATGTATAT
73654620 ATTGTGGCCG
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 54 1.00
ACGTcount: A:0.34, C:0.06, G:0.27, T:0.33
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:73654803 original size:37 final size:37
Alignment explanation
Indices: 73654753--73654824 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
73654743 GAAATATATT
*
73654753 CCGGGTAAGACCCGATGGCTACGTGTGGAGATTATGC
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGC
*
73654790 CCGGGTAAGACCCGATGACTACGTGTGGGGATTAT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTAT
73654825 TCGAGCTAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.22, C:0.21, G:0.35, T:0.22
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGC
Found at i:73657861 original size:27 final size:27
Alignment explanation
Indices: 73657820--73657873 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
73657810 TGTCATGTGA
* *
73657820 AATTGAATGGCAAATTATTCTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
73657847 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
73657874 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.09, G:0.13, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:73658200 original size:49 final size:48
Alignment explanation
Indices: 73658121--73658359 Score: 262
Period size: 49 Copynumber: 4.8 Consensus size: 48
73658111 CTATTGTGAA
*
73658121 GTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGAATAATTG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCG-ATAATTG
* * * *
73658170 GTCGCATGTGTAGTACTAAGTGCAGTCTACTATGCGTACTTGATAACTTTG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTAC-CGATAA--TTG
* * * * **
73658221 ATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTA-CCGATAATT-G
* * * *
73658271 GTCACGTGTGTAGTACTAAGTGCAGGCTATTACGTGTACTTGATAATTG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTAC-CGATAATTG
* *
73658320 GTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACC
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACC
73658360 AGATGGCCTT
Statistics
Matches: 159, Mismatches: 25, Indels: 13
0.81 0.13 0.07
Matches are distributed among these distances:
49 77 0.48
50 43 0.27
51 38 0.24
52 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (48 bp):
GTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGATAATTG
Found at i:73658255 original size:28 final size:28
Alignment explanation
Indices: 73658224--73658307 Score: 74
Period size: 28 Copynumber: 3.2 Consensus size: 28
73658214 AACTTTGATC
73658224 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * *
73658252 ACGTGTATCAG-A-T-GGT-TAGG-T-C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
*
73658274 ACGTGTGTAGTACTAAGTGCAGGCTATT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
73658302 ACGTGT
1 ACGTGT
73658308 ACTTGATAAT
Statistics
Matches: 41, Mismatches: 7, Indels: 16
0.64 0.11 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.20
23 2 0.05
24 3 0.07
25 6 0.15
26 3 0.07
27 1 0.02
28 14 0.34
29 2 0.05
ACGTcount: A:0.24, C:0.15, G:0.30, T:0.31
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:73658363 original size:99 final size:99
Alignment explanation
Indices: 73658122--73658365 Score: 312
Period size: 99 Copynumber: 2.5 Consensus size: 99
73658112 TATTGTGAAG
* ** *
73658122 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACC-GAATAATTGGTCGCATGTGTAGTAC
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAG-ATGGTTGGTCACATGTGTAGTAC
* *
73658186 TAAGTGCAGTCTACTATGCGTACTTGATAACTTTGA
65 TAAGTGCAGGCTACTACGCGTACTTGATAAC-TTGA
* * * *
73658222 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGGTT-GGTCACATGTGTAGTAC
* * *
73658287 TAAGTGCAGGCTATTACGTGTACTTGATAA-TTGG
65 TAAGTGCAGGCTACTACGCGTACTTGATAACTTGA
* *
73658321 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATGG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGG
73658366 CCTTGTCTAC
Statistics
Matches: 126, Mismatches: 16, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
99 43 0.34
100 41 0.33
101 42 0.33
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.32
Consensus pattern (99 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGGTTGGTCACATGTGTAGTACT
AAGTGCAGGCTACTACGCGTACTTGATAACTTGA
Found at i:73661119 original size:46 final size:46
Alignment explanation
Indices: 73661066--73661241 Score: 210
Period size: 46 Copynumber: 3.8 Consensus size: 46
73661056 TATTTGGGCA
*
73661066 TCCGAACTCGATGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
*** * * * *
73661112 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGA-GCG
* *
73661159 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * *
73661205 CCCGAGCTCGTTGAGTTGAGTTCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
73661242 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 19, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
46 71 0.66
47 37 0.34
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:73661221 original size:93 final size:93
Alignment explanation
Indices: 73661062--73661233 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
73661052 GGGATATTTG
* *
73661062 GGCATCCGAACTCGATGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGATGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
73661127 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
73661155 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGATGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
*
73661220 TTGAGTTCGAGTTC
66 TTGAGTCCGAGTTC
73661234 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.22, G:0.31, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGATGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:73669698 original size:27 final size:27
Alignment explanation
Indices: 73669657--73669710 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
73669647 TGTCATGTGA
* *
73669657 AATTGAATGGCAAATTATTCTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
73669684 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
73669711 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.09, G:0.13, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:73670079 original size:51 final size:50
Alignment explanation
Indices: 73669957--73670196 Score: 268
Period size: 49 Copynumber: 4.8 Consensus size: 50
73669947 TCTATTGTGA
* * * *
73669957 GGTCACATGTGTAGTACTAAGTGCACGCCACTACGTGTACCGGAGAA-TT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTT
* * *
73670006 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAA-TTT
* * * * ** *
73670057 GATCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTTA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTT
* *
73670107 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTT
* * * * *
73670156 CGTCGCATGTGTCGTACTAAGTGCAAGCTACTATGCGTACC
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACC
73670197 AGATGGCCTT
Statistics
Matches: 159, Mismatches: 30, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
49 75 0.47
50 43 0.27
51 41 0.26
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (50 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTT
Found at i:73675557 original size:12 final size:13
Alignment explanation
Indices: 73675529--73675561 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
73675519 TTATTTCTTT
73675529 TTCTCCATCTACC
1 TTCTCCATCTACC
*
73675542 TTCTCC-TCTTCC
1 TTCTCCATCTACC
73675554 TTCTCCAT
1 TTCTCCAT
73675562 AGCCGAACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.09, C:0.45, G:0.00, T:0.45
Consensus pattern (13 bp):
TTCTCCATCTACC
Found at i:73676661 original size:28 final size:28
Alignment explanation
Indices: 73676629--73676721 Score: 159
Period size: 28 Copynumber: 3.3 Consensus size: 28
73676619 ATTTACTAGA
*
73676629 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTGTGCAAAATTACCATT
73676657 ATACCCCTATGTGTGCAAAATTACCATT
1 ATACCCCTATGTGTGCAAAATTACCATT
* *
73676685 ATACCCCTATGTGTGCAAAATGACCTTT
1 ATACCCCTATGTGTGCAAAATTACCATT
73676713 ATACCCCTA
1 ATACCCCTA
73676722 GGGTTAATTT
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 62 1.00
ACGTcount: A:0.32, C:0.27, G:0.10, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTGTGCAAAATTACCATT
Found at i:73676885 original size:27 final size:27
Alignment explanation
Indices: 73676827--73676915 Score: 110
Period size: 27 Copynumber: 3.2 Consensus size: 27
73676817 AGGAAGCGTC
73676827 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
73676855 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
73676882 CTGGTGGCACT-CCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
73676910 CTGGTG
1 CTGGTG
73676916 ACTCTGTCAC
Statistics
Matches: 54, Mismatches: 4, Indels: 6
0.84 0.06 0.09
Matches are distributed among these distances:
26 4 0.07
27 27 0.50
28 23 0.43
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.33
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:73677401 original size:19 final size:19
Alignment explanation
Indices: 73677379--73677417 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
73677369 TTTAATTATT
* *
73677379 TTTTATGGTTTTGTTTTAC
1 TTTTATGATTTTATTTTAC
*
73677398 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
73677417 T
1 T
73677418 ATGATGAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:73680932 original size:101 final size:99
Alignment explanation
Indices: 73680733--73680933 Score: 276
Period size: 101 Copynumber: 2.0 Consensus size: 99
73680723 TATGTAGCCA
* * * * *
73680733 AACTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 AACTATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCAGGTACACA
*
73680798 TAGTAGCCTGCACTTAGTACTACACACGTGACCT
66 TAGTAGCCTGCACTTAGTACTACACACGCGACCT
* * * * *
73680832 AACTATCTGATACACTTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCATGTACG
1 AACTATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCAGGTACA
*
73680897 CATAGTAGCCTGCACTTAGTACTACACATGCGACCT
64 CATAGTAGCCTGCACTTAGTACTACACACGCGACCT
73680933 A
1 A
73680934 GCTACATATA
Statistics
Matches: 88, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
99 42 0.48
100 3 0.03
101 43 0.49
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.26
Consensus pattern (99 bp):
AACTATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCAGGTACACA
TAGTAGCCTGCACTTAGTACTACACACGCGACCT
Found at i:73681034 original size:67 final size:64
Alignment explanation
Indices: 73680920--73681071 Score: 164
Period size: 67 Copynumber: 2.3 Consensus size: 64
73680910 ACTTAGTACT
* *
73680920 ACACATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACATGGTGTACACATAG-ATC
1 ACACATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACATGATGTACACATAGCACC
* ** * *
73680983 ACCCATGCGACCTAGCTACATCATAATGTCTTGTAGCTCTCTTGTAC-ACATGATGTGCACTTAG
1 ACACATGCGACCTAGCTACAT-AT-A--TCCCGTAGCTCTCTTGT-CTACATGATGTACACATAG
73681047 CACC
61 CACC
* *
73681051 ATACATGTGACCTAGCTACAT
1 ACACATGCGACCTAGCTACAT
73681072 TCTATCTGAA
Statistics
Matches: 73, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
63 20 0.27
64 2 0.03
65 1 0.01
67 29 0.40
68 21 0.29
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.29
Consensus pattern (64 bp):
ACACATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACATGATGTACACATAGCACC
Found at i:73681773 original size:30 final size:30
Alignment explanation
Indices: 73681737--73681797 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
73681727 TCCTTAACTC
73681737 AAACTTTGGA-AAATTTACAATTTTGCCCCT
1 AAACTTT-GACAAATTTACAATTTTGCCCCT
* * *
73681767 AAACTTTTACATATTTACACTTTTGCCCCT
1 AAACTTTGACAAATTTACAATTTTGCCCCT
73681797 A
1 A
73681798 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
29 1 0.04
30 26 0.96
ACGTcount: A:0.31, C:0.23, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTGACAAATTTACAATTTTGCCCCT
Found at i:73684979 original size:46 final size:47
Alignment explanation
Indices: 73684748--73685109 Score: 266
Period size: 46 Copynumber: 7.7 Consensus size: 47
73684738 GGGTATAATA
* *
73684748 CCGATGCCATGTCCTAGACATGGTCTTACACTGGC-T-CATCCATCAAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACAT-C-TCGAG
* * * * *
73684795 TCGATGCAATGTCCCAGACATGGTCTTACACTGACTATCAAAT-TTGAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-T-ACATCTCGA-G
* * * * *
73684844 CCGACGCCATGTCTCAGACATGGTCTTACACTAGCTTTCACATATTCGTG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGC-TT-ACAT-CTCGAG
*
73684894 CCGATGCCATGTCCCAGACATGGTCTTACACTGAC--ACATCTCGTAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCG-AG
*
73684940 CCGATG-CATGTCCCAGACAT-GTCTTACATTGGCTTACATCTCGAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGA-G
* * * * *
73684986 CCGAAG-CATGTCCCAGACAT-GTCTTACACTAGCACT-CGTCTCAATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGC-TTACATCTCGA-G
* * * * *
73685032 CAGATGCCATCTCCCAGACATGGTTTTACACTGGCTCTCCTAATGT-G-G
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TAC--ATCTCGAG
*
73685080 CTGATG-CATGTCCCAGACAT-GTCTTACACT
1 CCGATGCCATGTCCCAGACATGGTCTTACACT
73685110 AGCTCACACA
Statistics
Matches: 253, Mismatches: 43, Indels: 39
0.76 0.13 0.12
Matches are distributed among these distances:
44 11 0.04
45 18 0.07
46 70 0.28
47 58 0.23
48 20 0.08
49 37 0.15
50 33 0.13
51 6 0.02
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (47 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAG
Found at i:73685478 original size:16 final size:16
Alignment explanation
Indices: 73685453--73685487 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
73685443 AATTCACTTC
*
73685453 TTTGGTAAAATGACCA
1 TTTGGAAAAATGACCA
73685469 TTTGGAAAAATGACCA
1 TTTGGAAAAATGACCA
73685485 TTT
1 TTT
73685488 TGCCCCTAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.37, C:0.11, G:0.17, T:0.34
Consensus pattern (16 bp):
TTTGGAAAAATGACCA
Found at i:73692417 original size:26 final size:26
Alignment explanation
Indices: 73692386--73692493 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
73692376 TGAAATGCCC
*
73692386 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
73692412 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
73692438 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
73692464 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
73692490 ATCA
1 ATCA
73692494 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:73699387 original size:26 final size:26
Alignment explanation
Indices: 73699356--73699463 Score: 164
Period size: 26 Copynumber: 4.2 Consensus size: 26
73699346 TGAAATGCCC
73699356 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
73699382 ATCATGGAACATTTACCT-AACCAATT
1 ATCATGGAACATTTACCTAAACC-ATT
* * *
73699408 ATCGTGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
*
73699434 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
73699460 ATCA
1 ATCA
73699464 ATTTGTACCA
Statistics
Matches: 74, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
25 4 0.05
26 67 0.91
27 3 0.04
ACGTcount: A:0.36, C:0.23, G:0.08, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:73701646 original size:34 final size:34
Alignment explanation
Indices: 73701608--73701674 Score: 116
Period size: 34 Copynumber: 2.0 Consensus size: 34
73701598 AAATTCCAGT
**
73701608 GAAAAAAGTGAGCAAAGAATATGGTTTTAGTAAG
1 GAAAAAAGCAAGCAAAGAATATGGTTTTAGTAAG
73701642 GAAAAAAGCAAGCAAAGAATATGGTTTTAGTAA
1 GAAAAAAGCAAGCAAAGAATATGGTTTTAGTAA
73701675 CCGCCCATGA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.49, C:0.04, G:0.24, T:0.22
Consensus pattern (34 bp):
GAAAAAAGCAAGCAAAGAATATGGTTTTAGTAAG
Found at i:73704929 original size:29 final size:30
Alignment explanation
Indices: 73704860--73704932 Score: 103
Period size: 30 Copynumber: 2.5 Consensus size: 30
73704850 AATTCAAAAT
*
73704860 GTACAGGGACTAAAATTGACCAATTTGAAA
1 GTACAGGGACTAAAATTGACCAAATTGAAA
* *
73704890 GTATAGGGACTAAAATTGATCAAATT-AAA
1 GTACAGGGACTAAAATTGACCAAATTGAAA
*
73704919 GTACAAGGACTAAA
1 GTACAGGGACTAAA
73704933 TTCACAACTT
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
29 15 0.39
30 23 0.61
ACGTcount: A:0.47, C:0.11, G:0.19, T:0.23
Consensus pattern (30 bp):
GTACAGGGACTAAAATTGACCAAATTGAAA
Found at i:73712508 original size:93 final size:92
Alignment explanation
Indices: 73712334--73712508 Score: 230
Period size: 93 Copynumber: 1.9 Consensus size: 92
73712324 TTGGGTGATA
* * * *
73712334 TGTGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAAGCTAGTGTAAGA
1 TGTGTGCTAGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGAGATACAAGCCAGCGTAAGA
73712399 CCTGTCTAGGACATGGCGTCAGCTTGT
66 CCTGTCTAGGACATGGCGTCAGCTTGT
* * *
73712426 TGTGTG-TCAGTGTAAGACCTGTCTGGGACATGGCATCGACAC-CGATAGATGA-GAGCCAGCGT
1 TGTGTGCT-AGTGTAAGACATGTCTGGGACAT-GCATCGAC-CTCGAGAGAT-ACAAGCCAGCGT
73712488 AAGACCTGTCTAGGACATGGC
62 AAGACCTGTCTAGGACATGGC
73712509 ACCGACTTTG
Statistics
Matches: 72, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
91 1 0.01
92 28 0.39
93 41 0.57
94 2 0.03
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.25
Consensus pattern (92 bp):
TGTGTGCTAGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGAGATACAAGCCAGCGTAAGA
CCTGTCTAGGACATGGCGTCAGCTTGT
Found at i:73726382 original size:30 final size:30
Alignment explanation
Indices: 73726337--73726394 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
73726327 TTACGAGCCC
* *
73726337 AAGGGCCAAAGTGCAAATATGTGAAAGTTT
1 AAGGGCCAAAATGCAAATATGTAAAAGTTT
* *
73726367 AAGGGTCAAAATGCAAATTTGTAAAAGT
1 AAGGGCCAAAATGCAAATATGTAAAAGT
73726395 ATGATTTTTG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.43, C:0.09, G:0.24, T:0.24
Consensus pattern (30 bp):
AAGGGCCAAAATGCAAATATGTAAAAGTTT
Found at i:73726634 original size:18 final size:20
Alignment explanation
Indices: 73726598--73726644 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
73726588 AGTTGTAAGT
73726598 ATATATATGTGAATAATTTG
1 ATATATATGTGAATAATTTG
* *
73726618 ATAT-TATGTGATTATTTTG
1 ATATATATGTGAATAATTTG
73726637 ATGATATA
1 AT-ATATA
73726645 ACATGTTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49
Consensus pattern (20 bp):
ATATATATGTGAATAATTTG
Found at i:73727076 original size:50 final size:50
Alignment explanation
Indices: 73726995--73727229 Score: 249
Period size: 50 Copynumber: 4.7 Consensus size: 50
73726985 GAGTCACGTA
* * *
73726995 TGTAGTACTGAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATG
1 TGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCACATG
* * * * * *
73727045 TGTAGTACTAAGTGCAGGCCACTATGCGTACCCG-TTAACTTCGATCACATG
1 TGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGA--TAGGTCACATG
* * * * * *
73727096 TGTAGTACTAAGTGTAGGCTACTATGTGTATCAGATGGTTAAGTCACGTG
1 TGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCACATG
* * * *
73727146 TGTAGTACTAAGTACAGGCTACTACGTGTACCAGACTGATAGGTCGCATG
1 TGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCACATG
* *
73727196 TGTAGTACTAAGTGCA-GCTACTGTGCGTACCAGA
1 TGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
73727230 GAGCTTCGGT
Statistics
Matches: 147, Mismatches: 35, Indels: 7
0.78 0.19 0.04
Matches are distributed among these distances:
49 18 0.12
50 91 0.62
51 37 0.25
52 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (50 bp):
TGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCACATG
Found at i:73727177 original size:101 final size:101
Alignment explanation
Indices: 73726995--73727177 Score: 249
Period size: 101 Copynumber: 1.8 Consensus size: 101
73726985 GAGTCACGTA
* * * * *
73726995 TGTAGTACTGAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGC
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGATAAGTCACATGTGTAGTACTAAGTAC
*
73727060 AGGCCACTATGCGTACCCGTTAACTTCGATCACATG
66 AGGCCACTACGCGTACCCGTTAACTTCGATCACATG
* * * * *
73727096 TGTAGTACTAAGTGTAGGCTACTATGTGTATCAGATGGTTAAGTCACGTGTGTAGTACTAAGTAC
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGATAAGTCACATGTGTAGTACTAAGTAC
* *
73727161 AGGCTACTACGTGTACC
66 AGGCCACTACGCGTACC
73727178 AGACTGATAG
Statistics
Matches: 69, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
101 69 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.30
Consensus pattern (101 bp):
TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGATAAGTCACATGTGTAGTACTAAGTAC
AGGCCACTACGCGTACCCGTTAACTTCGATCACATG
Found at i:73733499 original size:27 final size:26
Alignment explanation
Indices: 73733459--73733570 Score: 125
Period size: 27 Copynumber: 4.2 Consensus size: 26
73733449 AGGAAGCATC
*
73733459 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
73733486 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
* *
73733513 TTGGTGGTTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * *
73733541 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
73733567 CTGG
1 CTGG
73733571 CAGCCATGCT
Statistics
Matches: 72, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
26 7 0.10
27 50 0.69
28 15 0.21
ACGTcount: A:0.16, C:0.22, G:0.23, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:73733563 original size:54 final size:54
Alignment explanation
Indices: 73733460--73733566 Score: 153
Period size: 54 Copynumber: 2.0 Consensus size: 54
73733450 GGAAGCATCC
*
73733460 TGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTT
1 TGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTTT
* * * *
73733514 TGGTGGTTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 TGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
73733567 CTGGCAGCCA
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
54 29 0.62
55 18 0.38
ACGTcount: A:0.17, C:0.21, G:0.22, T:0.39
Consensus pattern (54 bp):
TGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTTT
Found at i:73735954 original size:6 final size:6
Alignment explanation
Indices: 73735943--73735967 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
73735933 GGTAGGGGCA
73735943 GAAATG GAAATG GAAATG GAAATG G
1 GAAATG GAAATG GAAATG GAAATG G
73735968 TCGAGGTCGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.36, T:0.16
Consensus pattern (6 bp):
GAAATG
Found at i:73738700 original size:46 final size:46
Alignment explanation
Indices: 73738633--73738853 Score: 279
Period size: 46 Copynumber: 4.8 Consensus size: 46
73738623 TGTAACCCGC
* * * *
73738633 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * **
73738679 CCATAGGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA--CAT-TCGCAT
* *
73738728 CTC-T---CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
73738771 CCATAAATGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
73738817 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
73738854 TGCTCAACCA
Statistics
Matches: 154, Mismatches: 13, Indels: 16
0.84 0.07 0.09
Matches are distributed among these distances:
42 1 0.01
43 7 0.05
44 2 0.01
46 135 0.88
48 2 0.01
49 6 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:73744211 original size:27 final size:26
Alignment explanation
Indices: 73744171--73744282 Score: 125
Period size: 27 Copynumber: 4.2 Consensus size: 26
73744161 AGGAAGCGTC
* *
73744171 CTGGTGGCTATGCCATAATTATCTGAT
1 CTGGTGGCTCTGCCA-CATTATCTGAT
*
73744198 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
73744225 CTGGTGGTTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * *
73744253 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
73744279 CTGG
1 CTGG
73744283 CAGCCATGCT
Statistics
Matches: 73, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 7 0.10
27 50 0.68
28 16 0.22
ACGTcount: A:0.16, C:0.22, G:0.23, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:73748229 original size:33 final size:33
Alignment explanation
Indices: 73748063--73748220 Score: 208
Period size: 33 Copynumber: 4.8 Consensus size: 33
73748053 GTGTACGGTG
* * *
73748063 TACTTTATGTATACCAATTGAAAAGGAAAGATA
1 TACTTTGTGTATACCACTTGAAAAGGAAAGGTA
* *
73748096 TACTTTATGTATACCGCTTGAAAAGGAAAGGTA
1 TACTTTGTGTATACCACTTGAAAAGGAAAGGTA
* *
73748129 TACTTTGTGTATACTAATTGAAAAGGAAAGGTA
1 TACTTTGTGTATACCACTTGAAAAGGAAAGGTA
* *
73748162 TACTTTGTGTATACCATTTGAAAAAGAAAGGTA
1 TACTTTGTGTATACCACTTGAAAAGGAAAGGTA
* * *
73748195 TGCTTCGTGTATACTACTTGAAAAGG
1 TACTTTGTGTATACCACTTGAAAAGG
73748221 TTATGTATGT
Statistics
Matches: 110, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 110 1.00
ACGTcount: A:0.38, C:0.10, G:0.20, T:0.32
Consensus pattern (33 bp):
TACTTTGTGTATACCACTTGAAAAGGAAAGGTA
Found at i:73758056 original size:15 final size:15
Alignment explanation
Indices: 73758028--73758071 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
73758018 TTCATTATGA
*
73758028 TATTGTATCATGGATT
1 TATT-TATCTTGGATT
73758044 TATTTATCTTGGATT
1 TATTTATCTTGGATT
* *
73758059 TCTCTATCTTGGA
1 TATTTATCTTGGA
73758072 CTTCTTAATC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
15 21 0.84
16 4 0.16
ACGTcount: A:0.20, C:0.11, G:0.16, T:0.52
Consensus pattern (15 bp):
TATTTATCTTGGATT
Found at i:73760413 original size:30 final size:30
Alignment explanation
Indices: 73760377--73760436 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
73760367 TTTTACGAGC
* * *
73760377 TTAGGGGCCAAAGTGCAAATATGTGAAAGT
1 TTAGGGGCCAAAATGAAAATATGTAAAAGT
* *
73760407 TTAGGGGTCAAAATGAAAATTTGTAAAAGT
1 TTAGGGGCCAAAATGAAAATATGTAAAAGT
73760437 ATGATTTTTG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.40, C:0.07, G:0.27, T:0.27
Consensus pattern (30 bp):
TTAGGGGCCAAAATGAAAATATGTAAAAGT
Found at i:73760693 original size:18 final size:20
Alignment explanation
Indices: 73760657--73760703 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
73760647 AGTTGTAAGT
73760657 ATATATATGTGAATAATTTG
1 ATATATATGTGAATAATTTG
* *
73760677 ATAT-TATGTGATTATTTTG
1 ATATATATGTGAATAATTTG
73760696 ATGATATA
1 AT-ATATA
73760704 ACATGTTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49
Consensus pattern (20 bp):
ATATATATGTGAATAATTTG
Found at i:73761127 original size:50 final size:50
Alignment explanation
Indices: 73761052--73761447 Score: 418
Period size: 50 Copynumber: 7.9 Consensus size: 50
73761042 TCCGTTGTGA
* * *
73761052 GTCACGTGTGTAGTACTAAATGCAGGCTACTACATGTACCAGATTGATAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
* ** * * *
73761102 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGCATACCCG-TTAACTTCG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA--TAG
* * * * * * * *
73761153 ATCACGTGTGTAGTACTAAGTGCAGACTACTACGTATATCAGATGGTTAA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
73761203 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
* * * * * * *
73761253 GTCCCATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCCG-TTAACTTG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA-TAG
* * * *
73761303 GATCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAA
1 G-TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
* * * * *
73761354 GTCACGTGTGTAGTACTAAGTGCATGTTACTATGTGTACCATATTGATAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
* * *
73761404 GTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAT
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT
73761448 AGCTTCGATT
Statistics
Matches: 278, Mismatches: 62, Indels: 12
0.79 0.18 0.03
Matches are distributed among these distances:
49 6 0.02
50 196 0.71
51 74 0.27
52 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.30
Consensus pattern (50 bp):
GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
Found at i:73761309 original size:101 final size:100
Alignment explanation
Indices: 73761051--73761447 Score: 357
Period size: 101 Copynumber: 4.0 Consensus size: 100
73761041 ATCCGTTGTG
* * *** * *
73761051 AGTCACGTGTGTAGTACTAAATGCAGGCTACTACATGTACCAGATTGATAGGTCACATGTGTAGT
1 AGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCACATTAATAGGTCACATGTGTAGT
* ** * ** *
73761116 ACTAAGTGCAGGCTACTATGCATACCCG-TTAACTT
66 ACTAAGTGCAGGCTACTACGTGTACCAGATGGA-TA
* * * * ** * * *** *
73761151 CGATCACGTGTGTAGTACTAAGTGCAGACTACTACGTATATCAGATGGTTAAGTCACATGTGTAG
1 AG-TCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCACATTAATAGGTCACATGTGTAG
*
73761216 TACTAAGTGCAGGCTACTACGTGTACCAGATTGATA
65 TACTAAGTGCAGGCTACTACGTGTACCAGATGGATA
* * * * *
73761252 GGTCCCATGTGTAGTACTAAGTGTAGGCTACTATGCGTACC-CGTTAACTTGGATCACATGTGTA
1 AGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCACATTAA-TAGG-TCACATGTGTA
* *
73761316 GTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTA
64 GTACTAAGTGCAGGCTACTACGTGTACCAGATGGATA
* * * * * * *
73761353 AGTCACGTGTGTAGTACTAAGTGCATGTTACTATGTGTACCATATTGATAGGTCGCATGTGTAGT
1 AGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCACATTAATAGGTCACATGTGTAGT
* *
73761418 ACTAAGTGCAGGCTACTATGCGTACCAGAT
66 ACTAAGTGCAGGCTACTACGTGTACCAGAT
73761448 AGCTTCGATT
Statistics
Matches: 243, Mismatches: 49, Indels: 10
0.80 0.16 0.03
Matches are distributed among these distances:
99 1 0.00
100 73 0.30
101 163 0.67
102 6 0.02
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.30
Consensus pattern (100 bp):
AGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCACATTAATAGGTCACATGTGTAGT
ACTAAGTGCAGGCTACTACGTGTACCAGATGGATA
Found at i:73761325 original size:151 final size:151
Alignment explanation
Indices: 73761051--73761443 Score: 651
Period size: 151 Copynumber: 2.6 Consensus size: 151
73761041 ATCCGTTGTG
* *
73761051 AGTCACGTGTGTAGTACTAAATGCAGGCTACTACATGTACCAGATTGATAGGTCACATGTGTAGT
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGT
* *
73761116 ACTAAGTGCAGGCTACTATGCATACCCGTTAACTTCGATCACGTGTGTAGTACTAAGTGCAGACT
66 ACTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGATCACATGTGTAGTACTAAGTGCAGACT
73761181 ACTACGTATATCAGATGGTTA
131 ACTACGTATATCAGATGGTTA
* *
73761202 AGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCCCATGTGTAGT
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGT
* * *
73761267 ACTAAGTGTAGGCTACTATGCGTACCCGTTAACTTGGATCACATGTGTAGTACTAAGTGCAGGCT
66 ACTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGATCACATGTGTAGTACTAAGTGCAGACT
*
73761332 ACTACGTGTATCAGATGGTTA
131 ACTACGTATATCAGATGGTTA
* * * * *
73761353 AGTCACGTGTGTAGTACTAAGTGCATGTTACTATGTGTACCATATTGATAGGTCGCATGTGTAGT
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGT
73761418 ACTAAGTGCAGGCTACTATGCGTACC
66 ACTAAGTGCAGGCTACTATGCGTACC
73761444 AGATAGCTTC
Statistics
Matches: 225, Mismatches: 17, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
151 225 1.00
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (151 bp):
AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGT
ACTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGATCACATGTGTAGTACTAAGTGCAGACT
ACTACGTATATCAGATGGTTA
Found at i:73761667 original size:16 final size:16
Alignment explanation
Indices: 73761646--73761677 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
73761636 AGAATGGAGT
73761646 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
73761662 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
73761678 TAAAACAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:73766644 original size:52 final size:52
Alignment explanation
Indices: 73766576--73766681 Score: 194
Period size: 52 Copynumber: 2.0 Consensus size: 52
73766566 CCGAGCAAGC
*
73766576 TTCGGATACCTTTTACTATAGTAGGTGGTGGCAATTTTTCAATAACCTCAAT
1 TTCGGATACCTTTTACTATAGTAGGTGGTGGCAATTTCTCAATAACCTCAAT
*
73766628 TTCGGATACCTTTTACTATAGTAGGTGGTGGTAATTTCTCAATAACCTCAAT
1 TTCGGATACCTTTTACTATAGTAGGTGGTGGCAATTTCTCAATAACCTCAAT
73766680 TT
1 TT
73766682 TTTCTTTGTC
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.40
Consensus pattern (52 bp):
TTCGGATACCTTTTACTATAGTAGGTGGTGGCAATTTCTCAATAACCTCAAT
Found at i:73773416 original size:42 final size:42
Alignment explanation
Indices: 73773369--73773463 Score: 154
Period size: 42 Copynumber: 2.3 Consensus size: 42
73773359 TATAAGGGTT
* *
73773369 TTCACACGGCCTGTCACACACCCGTGTCCCTAGCTCGTGTCC
1 TTCACACGGCCTATCACACACCCGTGTCCCTAGCCCGTGTCC
* *
73773411 TTCACACGGCCTATCACACTCCCGTGTCCCTGGCCCGTGTCC
1 TTCACACGGCCTATCACACACCCGTGTCCCTAGCCCGTGTCC
73773453 TTCACACGGCC
1 TTCACACGGCC
73773464 ATGACATGCC
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.14, C:0.44, G:0.19, T:0.23
Consensus pattern (42 bp):
TTCACACGGCCTATCACACACCCGTGTCCCTAGCCCGTGTCC
Found at i:73775519 original size:28 final size:28
Alignment explanation
Indices: 73775456--73775578 Score: 176
Period size: 28 Copynumber: 4.4 Consensus size: 28
73775446 ATATTAAGTC
*
73775456 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
73775483 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
73775511 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
73775539 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
73775568 CGCACACTTAG
1 CGCACACTTAG
73775579 CGCCAATCTC
Statistics
Matches: 87, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 22 0.25
28 49 0.56
29 16 0.18
ACGTcount: A:0.33, C:0.28, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:73783716 original size:28 final size:28
Alignment explanation
Indices: 73783653--73783775 Score: 176
Period size: 28 Copynumber: 4.4 Consensus size: 28
73783643 ATATTAAGTC
*
73783653 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
73783680 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
73783708 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
73783736 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
73783765 CGCACACTTAG
1 CGCACACTTAG
73783776 CGCCAATCTC
Statistics
Matches: 87, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 22 0.25
28 49 0.56
29 16 0.18
ACGTcount: A:0.33, C:0.28, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:73786170 original size:46 final size:46
Alignment explanation
Indices: 73786019--73786238 Score: 187
Period size: 47 Copynumber: 4.7 Consensus size: 46
73786009 GGGGTAAGAT
* * *
73786019 GCTGATGCCATGTCCCAGACACGGTCTTACACTGGCTTATATCTCAA
1 GCTGATGCCATGTCCCAGACA-TGTCTTACACTGGCTTACATCTCTA
* * *
73786066 GTTGAAGCCATGTCCCAGACATGATCTTACACTGAC-TATCATCTCGTA
1 GCTGATGCCATGTCCCAGACATG-TCTTACACTGGCTTA-CATCTC-TA
** * * *
73786114 GCCAACG-CATGTCCCAAACATGTCTTACACTGGCTTACGTCTCTA
1 GCTGATGCCATGTCCCAGACATGTCTTACACTGGCTTACATCTCTA
* * * * *
73786159 GGCTGATG-CATGTCCTAGACATGTCTTACACTAGCACT-CGTCTCAA
1 -GCTGATGCCATGTCCCAGACATGTCTTACACTGGC-TTACATCTCTA
*
73786205 TGCCGATGCCATGTCCCAGACATGGTCTTACACT
1 -GCTGATGCCATGTCCCAGACAT-GTCTTACACT
73786239 AGCTCTTACA
Statistics
Matches: 141, Mismatches: 24, Indels: 15
0.78 0.13 0.08
Matches are distributed among these distances:
45 2 0.01
46 60 0.43
47 65 0.46
48 14 0.10
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (46 bp):
GCTGATGCCATGTCCCAGACATGTCTTACACTGGCTTACATCTCTA
Found at i:73786218 original size:93 final size:92
Alignment explanation
Indices: 73786017--73786238 Score: 227
Period size: 93 Copynumber: 2.4 Consensus size: 92
73786007 ATGGGGTAAG
* * * *
73786017 ATGCTGATGCCATGTCCCAGACACGGTCTTACACTGGCTTATATCTCAAGTTGAAGCCATGTCCC
1 ATGCCGATGCCATGTCCCAGACA-TGTCTTACACTGGCTTACATCTCAAGCTGAAGCCATGTCCC
73786082 AGACATGATCTTACACTGACTATCATCTC
65 AGACATGATCTTACACTGAC-ATCATCTC
* * * * * * *
73786111 GTAGCCAACG-CATGTCCCAAACATGTCTTACACTGGCTTACGTCTCTAGGCTGATG-CATGTCC
1 AT-GCCGATGCCATGTCCCAGACATGTCTTACACTGGCTTACATCTC-AAGCTGAAGCCATGTCC
* *
73786174 TAGACATG-TCTTACACT-AGCACTCGTCTC
64 CAGACATGATCTTACACTGA-CA-TCATCTC
73786203 AATGCCGATGCCATGTCCCAGACATGGTCTTACACT
1 -ATGCCGATGCCATGTCCCAGACAT-GTCTTACACT
73786239 AGCTCTTACA
Statistics
Matches: 104, Mismatches: 17, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
91 2 0.02
92 21 0.20
93 48 0.46
94 29 0.28
95 4 0.04
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (92 bp):
ATGCCGATGCCATGTCCCAGACATGTCTTACACTGGCTTACATCTCAAGCTGAAGCCATGTCCCA
GACATGATCTTACACTGACATCATCTC
Found at i:73801017 original size:52 final size:50
Alignment explanation
Indices: 73800930--73801117 Score: 171
Period size: 52 Copynumber: 3.7 Consensus size: 50
73800920 ATTGTGAGAA
* * *
73800930 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAAATGGTTTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTTCAAAATGG--TTAGGT
* * * * *
73800982 CACGTGTGTAGTGCTAAGTGCAGGATACTACGTGTTCCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTTCAAAATGGTTAGGT
* ** * * * **
73801032 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAATA-GCTTCGAA
1 CACATGTGTAGTACTAAGTGCAGGCTACTA--CGTGTTCAAAATGGTTAGGT
* *
73801083 CACATGTGTAGTACTAAGTGCAGGCCACTATGTGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGT
73801118 AAAAGATATC
Statistics
Matches: 109, Mismatches: 25, Indels: 7
0.77 0.18 0.05
Matches are distributed among these distances:
49 2 0.02
50 32 0.29
51 32 0.29
52 43 0.39
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTTCAAAATGGTTAGGT
Found at i:73801051 original size:50 final size:51
Alignment explanation
Indices: 73800930--73801117 Score: 171
Period size: 50 Copynumber: 3.7 Consensus size: 51
73800920 ATTGTGAGAA
* * *
73800930 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAAATGGTTTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTTCAAAATGG-TTTAGGT
* * * * *
73800982 CACGTGTGTAGTGCTAAGTGCAGGATACTACGTGTTCCAGATGG-TTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTTCAAAATGGTTTAGGT
* * * * ** * * * **
73801032 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAATAGCTTCGAA
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTTCAAAATGGTTTAGGT
* *
73801083 CACATGTGTAGTACTAAGTGCAGGCCACTATGTGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGT
73801118 AAAAGATATC
Statistics
Matches: 110, Mismatches: 25, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
50 39 0.35
51 35 0.32
52 36 0.33
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (51 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTTCAAAATGGTTTAGGT
Found at i:73801116 original size:26 final size:26
Alignment explanation
Indices: 73801035--73801118 Score: 66
Period size: 26 Copynumber: 3.3 Consensus size: 26
73801025 GTTAGGTCGC
*
73801035 ATGTGTAGTACTAAGTGCAGGCTACT
1 ATGTGTAGTACTAAGTGCAGGCCACT
* * * * **
73801061 ATGCGTACT-CAATAGCTTC-GAACAC-
1 ATGTGTAGTACTA-AG-TGCAGGCCACT
73801086 ATGTGTAGTACTAAGTGCAGGCCACT
1 ATGTGTAGTACTAAGTGCAGGCCACT
73801112 ATGTGTA
1 ATGTGTA
73801119 AAAGATATCT
Statistics
Matches: 40, Mismatches: 13, Indels: 10
0.63 0.21 0.16
Matches are distributed among these distances:
24 2 0.05
25 15 0.38
26 21 0.52
27 2 0.05
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.29
Consensus pattern (26 bp):
ATGTGTAGTACTAAGTGCAGGCCACT
Found at i:73801148 original size:51 final size:50
Alignment explanation
Indices: 73801072--73801212 Score: 142
Period size: 51 Copynumber: 2.8 Consensus size: 50
73801062 TGCGTACTCA
* * * *
73801072 ATAGCTTCGAACACATGTGTAGTACTAAGTGCAGGCCACTAT-GTGTAA-AAG
1 ATAGCTTTG-ACACAAGTGTGGTACTATGTGCAGGCCACT-TGGTG-AAGAAG
* * *
73801123 ATATCTTTGGTCACAAGTGTGGTACTATGTGAAGGCCACTTGGTGAAGAAG
1 ATAGCTTT-GACACAAGTGTGGTACTATGTGCAGGCCACTTGGTGAAGAAG
* *
73801174 GTAGCTTTGACTACAAGGGTGGTACTATGTGCAGGCCAC
1 ATAGCTTTGAC-ACAAGTGTGGTACTATGTGCAGGCCAC
73801213 CAGGCATCCG
Statistics
Matches: 74, Mismatches: 12, Indels: 8
0.79 0.13 0.09
Matches are distributed among these distances:
50 5 0.07
51 68 0.92
52 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (50 bp):
ATAGCTTTGACACAAGTGTGGTACTATGTGCAGGCCACTTGGTGAAGAAG
Found at i:73820363 original size:15 final size:15
Alignment explanation
Indices: 73820343--73820394 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
73820333 ACTACAAAAC
73820343 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
73820358 ATTTATAATTGTAATAAGT
1 ATTTATTA-T-TAAT-A-T
*
73820377 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
73820392 ATT
1 ATT
73820395 AATATTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 11 0.37
16 2 0.07
17 7 0.23
18 2 0.07
19 8 0.27
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:73820452 original size:15 final size:16
Alignment explanation
Indices: 73820432--73820462 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
73820422 AATAATAATA
73820432 TTTAAAA-TTATTATT
1 TTTAAAATTTATTATT
73820447 TTTAAAATTTATTATT
1 TTTAAAATTTATTATT
73820463 AAAATAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
TTTAAAATTTATTATT
Found at i:73820515 original size:22 final size:22
Alignment explanation
Indices: 73820471--73820530 Score: 70
Period size: 22 Copynumber: 2.8 Consensus size: 22
73820461 TTAAAATAAA
* *
73820471 ATTAAAATATTAA-ATA-ATTT
1 ATTAAAATAATAATTTATATTT
73820491 ATTAAAATAATAATTTATATTT
1 ATTAAAATAATAATTTATATTT
* *
73820513 ATTATATTAATAATTTAT
1 ATTAAAATAATAATTTAT
73820531 TATATGACTA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
20 12 0.35
21 2 0.06
22 20 0.59
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (22 bp):
ATTAAAATAATAATTTATATTT
Found at i:73821254 original size:28 final size:28
Alignment explanation
Indices: 73821189--73821255 Score: 66
Period size: 28 Copynumber: 2.4 Consensus size: 28
73821179 ATTGTTAATA
*
73821189 ATATTA-TTTAAAGCATAATATATTATT
1 ATATTATTTTAAAGCATAATAAATTATT
* * * *
73821216 AT-TAATATTTAAATCATGATAAATTTTT
1 ATATTAT-TTTAAAGCATAATAAATTATT
73821244 ATATTATTTTAA
1 ATATTATTTTAA
73821256 TATTAAATAT
Statistics
Matches: 31, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
26 2 0.06
27 2 0.06
28 24 0.77
29 3 0.10
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51
Consensus pattern (28 bp):
ATATTATTTTAAAGCATAATAAATTATT
Found at i:73821338 original size:18 final size:19
Alignment explanation
Indices: 73821315--73821375 Score: 63
Period size: 18 Copynumber: 3.2 Consensus size: 19
73821305 TTTAAAATTA
73821315 TTAATTGCATT-ATTATTT
1 TTAATTGCATTAATTATTT
*
73821333 TTAATT-TATTAATTATTT
1 TTAATTGCATTAATTATTT
* *
73821351 TAAAATGACATTAATTAATTT
1 TTAATTG-CATTAATT-ATTT
73821372 TTAA
1 TTAA
73821376 AATTAAATAT
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
17 3 0.09
18 17 0.50
20 7 0.21
21 7 0.21
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (19 bp):
TTAATTGCATTAATTATTT
Found at i:73821914 original size:71 final size:70
Alignment explanation
Indices: 73821835--73821982 Score: 192
Period size: 70 Copynumber: 2.1 Consensus size: 70
73821825 GTTTCATTTT
* * * * *
73821835 TCCA-ATTTAAATTGA-AAGTAAGCAGAGACCTTGAAATCTTGATCTGTTCTCTTATTTTGTAGG
1 TCCATATTTAAATTGATAA-TAAGAAAAAACCTTGAAATATTGATCT-TTCTCTTATTCTGTAGG
*
73821898 GTTTTAA
64 GTTCTAA
* *
73821905 TCCATATTTAAATTGATAATAAGAAAAAATCTTGAAATATTGCTCTTTCTCTTATTCTGTAGGGT
1 TCCATATTTAAATTGATAATAAGAAAAAACCTTGAAATATTGATCTTTCTCTTATTCTGTAGGGT
73821970 TCTAA
66 TCTAA
73821975 TCCATATT
1 TCCATATT
73821983 AGTAATTAAT
Statistics
Matches: 68, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
70 34 0.50
71 32 0.47
72 2 0.03
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.41
Consensus pattern (70 bp):
TCCATATTTAAATTGATAATAAGAAAAAACCTTGAAATATTGATCTTTCTCTTATTCTGTAGGGT
TCTAA
Found at i:73827229 original size:16 final size:16
Alignment explanation
Indices: 73827181--73827229 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 16
73827171 AAATAATCAC
* *
73827181 AAATACTAGTATTTTA
1 AAATGCTAGCATTTTA
*
73827197 AAATGAT-GCATTTTA
1 AAATGCTAGCATTTTA
*
73827212 AAATGCTAGCATTCTA
1 AAATGCTAGCATTTTA
73827228 AA
1 AA
73827230 TGTCTTCAGA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
15 13 0.48
16 14 0.52
ACGTcount: A:0.43, C:0.10, G:0.10, T:0.37
Consensus pattern (16 bp):
AAATGCTAGCATTTTA
Found at i:73827919 original size:30 final size:30
Alignment explanation
Indices: 73827883--73827956 Score: 87
Period size: 30 Copynumber: 2.4 Consensus size: 30
73827873 TAAGTTGTGG
* * *
73827883 ATTTTAGTCATTATACTTTT-AATTTGATTA
1 ATTTTAGTCACTAAACTTTTAAATTTG-TCA
*
73827913 ATTTTAGTCCCTAAACTTTTCAAATTTGTCA
1 ATTTTAGTCACTAAACTTTT-AAATTTGTCA
73827944 ATTTTAGTCACTA
1 ATTTTAGTCACTA
73827957 CTTCTCACAT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
30 17 0.46
31 14 0.38
32 6 0.16
ACGTcount: A:0.30, C:0.14, G:0.07, T:0.50
Consensus pattern (30 bp):
ATTTTAGTCACTAAACTTTTAAATTTGTCA
Found at i:73833588 original size:18 final size:18
Alignment explanation
Indices: 73833560--73833604 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 18
73833550 CACCCTTTAA
73833560 TTTTATAATTTTCA-GAATT
1 TTTTAT-ATTTT-ATGAATT
*
73833579 TTTTATATTTTATGATTT
1 TTTTATATTTTATGAATT
73833597 TTTTATAT
1 TTTTATAT
73833605 ATATTTCTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
17 1 0.04
18 17 0.71
19 6 0.25
ACGTcount: A:0.27, C:0.02, G:0.04, T:0.67
Consensus pattern (18 bp):
TTTTATATTTTATGAATT
Found at i:73835107 original size:31 final size:30
Alignment explanation
Indices: 73835044--73835107 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 30
73835034 TTTTATTTTA
*
73835044 TTGTTAATTTTCTTATTATTTTAAAGGTAT
1 TTGTTAATTTTCTTATTATTTTAAAGGCAT
*
73835074 TTGTTAATTTTTTTTATTATTTTAGAA-GCAT
1 TTGTTAA-TTTTCTTATTATTTTA-AAGGCAT
73835105 TTG
1 TTG
73835108 CTTGTTAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
30 7 0.23
31 21 0.70
32 2 0.07
ACGTcount: A:0.25, C:0.03, G:0.11, T:0.61
Consensus pattern (30 bp):
TTGTTAATTTTCTTATTATTTTAAAGGCAT
Found at i:73838373 original size:23 final size:23
Alignment explanation
Indices: 73838343--73838390 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
73838333 AAAGAGAGTA
73838343 AATTGAAAAGTGTATAATCTTAT
1 AATTGAAAAGTGTATAATCTTAT
73838366 AATTGAAAAGTGTATAATCTTAT
1 AATTGAAAAGTGTATAATCTTAT
73838389 AA
1 AA
73838391 AAAGGTTGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.46, C:0.04, G:0.12, T:0.38
Consensus pattern (23 bp):
AATTGAAAAGTGTATAATCTTAT
Found at i:73838688 original size:58 final size:58
Alignment explanation
Indices: 73838598--73838708 Score: 204
Period size: 58 Copynumber: 1.9 Consensus size: 58
73838588 GATGGAAGTA
*
73838598 ACGAGCGTGTGTCTCAGCTGTGTGACCCCTGTAGTATGAATTTTTTCCATCTTGAGAC
1 ACGAGCGTGTGTCTCAGCTATGTGACCCCTGTAGTATGAATTTTTTCCATCTTGAGAC
*
73838656 ACGAGCGTGTGTCTCAGCTATGTGACCCCTGTAGTATGAATTTTTTCTATCTT
1 ACGAGCGTGTGTCTCAGCTATGTGACCCCTGTAGTATGAATTTTTTCCATCTT
73838709 TTGCCTTGAA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
58 51 1.00
ACGTcount: A:0.19, C:0.22, G:0.23, T:0.37
Consensus pattern (58 bp):
ACGAGCGTGTGTCTCAGCTATGTGACCCCTGTAGTATGAATTTTTTCCATCTTGAGAC
Found at i:73843871 original size:20 final size:20
Alignment explanation
Indices: 73843846--73843883 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
73843836 CTCAATCGAG
73843846 GATAATTAATTATTTAATTA
1 GATAATTAATTATTTAATTA
*
73843866 GATAATTACTTATTTAAT
1 GATAATTAATTATTTAAT
73843884 CAATCATAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (20 bp):
GATAATTAATTATTTAATTA
Found at i:73845534 original size:31 final size:31
Alignment explanation
Indices: 73845460--73845587 Score: 141
Period size: 31 Copynumber: 4.1 Consensus size: 31
73845450 CTTGACGGGC
* * * *
73845460 TCTA-TCTATGTTTACTGTTCTAGCAGACTA
1 TCTATTCTGTGTTTACTGTCCCAGCGGACTA
* *
73845490 TCTCTGTTCTGTGTTTACTGTCCTAGCGGACTA
1 --TCTATTCTGTGTTTACTGTCCCAGCGGACTA
* **
73845523 TCTATTCTGTGTTTACTATCCCAATGGACTA
1 TCTATTCTGTGTTTACTGTCCCAGCGGACTA
*
73845554 TCTATTTTGTGTTTACTGTCCCAGCGGACTA
1 TCTATTCTGTGTTTACTGTCCCAGCGGACTA
73845585 TCT
1 TCT
73845588 TTGTAGGTGC
Statistics
Matches: 82, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
31 56 0.68
32 3 0.04
33 23 0.28
ACGTcount: A:0.18, C:0.23, G:0.16, T:0.43
Consensus pattern (31 bp):
TCTATTCTGTGTTTACTGTCCCAGCGGACTA
Found at i:73845866 original size:109 final size:109
Alignment explanation
Indices: 73845705--73846288 Score: 472
Period size: 109 Copynumber: 5.3 Consensus size: 109
73845695 ACATGGATGC
* * * * **
73845705 CATAACATCTTTCATCTACGATCTTACACCGA-ATACCTTATACCTTGTACCATGTCGCTGTGGC
1 CATAGCATCTTTCATCTATGGTCTTACGCC-ATATACCTTATACCTTGTACCATGTCGCCATGGC
* * *
73845769 ATCTTTCATCCA-GAATCTTATGCTATGTACCTCATACCAGACTTT
65 ATCTTTCATCCATG-GTCTTATGCTATGTACCTCATACCAGGCTAT
* * * * * *
73845814 CGTAGCATCTTTCGTCTATGGTCTTATGCCATATACCTTATACCTTATACCAT-ACAGCCATGAC
1 CATAGCATCTTTCATCTATGGTCTTACGCCATATACCTTATACCTTGTACCATGTC-GCCATGGC
** * ** ** **
73845878 ATCTTTCATCCATGGTCTTACACCAAATACCTTGTACCTTGC-AGT
65 ATCTTTCATCCATGGTCTTATGCTATGTACCTCATACCAGGCTA-T
* * * * *
73845923 CGTGGCATCTTTCAT-TCATGGTCTTACACCAAATACCTTATACATTGTACCATGTCGCCATGGC
1 CATAGCATCTTTCATCT-ATGGTCTTACGCCATATACCTTATACCTTGTACCATGTCGCCATGGC
* * * * *
73845987 ATCTTTCATCCATGGTCTTACACTGAATACTTTATACCTTATACCA-TCTGT
65 ATCTTTCATCCATGGTCTT--A-TG----CTATGTACCTCATACCAGGCTAT
* * * * * * * *
73846038 CATGGGA-CTTTTCATCTATGGTTTTACACTGA-ATACCTTATACCTTATACCATCT-GTCATGG
1 CATAGCATC-TTTCATCTATGGTCTTACGC-CATATACCTTATACCTTGTACCATGTCGCCATGG
* * *
73846100 GACCTTTCATCTATGGTCTTATGCTATGTACCTCATACCAGGCTAT
64 CATCTTTCATCCATGGTCTTATGCTATGTACCTCATACCAGGCTAT
* * * *
73846146 CATAGCCTCTTTCATCTATGGTCTTACGCCATATACCTTTTACCTTGTACCAT-TCCACCATGAC
1 CATAGCATCTTTCATCTATGGTCTTACGCCATATACCTTATACCTTGTACCATGT-CGCCATGGC
* *
73846210 ATCTTTCATCCATGATCTTATGCTATGTACCTC-TACCAGGCTAC
65 ATCTTTCATCCATGGTCTTATGCTATGTACCTCATACCAGGCTAT
*
73846254 CATAGTC-TCTTTCATATATGGTCTTACGCCATATA
1 CATAG-CATCTTTCATCTATGGTCTTACGCCATATA
73846289 TCATCGTTAC
Statistics
Matches: 377, Mismatches: 75, Indels: 47
0.76 0.15 0.09
Matches are distributed among these distances:
107 16 0.04
108 89 0.24
109 184 0.49
110 2 0.01
111 3 0.01
112 1 0.00
114 24 0.06
115 44 0.12
116 14 0.04
ACGTcount: A:0.24, C:0.28, G:0.12, T:0.36
Consensus pattern (109 bp):
CATAGCATCTTTCATCTATGGTCTTACGCCATATACCTTATACCTTGTACCATGTCGCCATGGCA
TCTTTCATCCATGGTCTTATGCTATGTACCTCATACCAGGCTAT
Found at i:73845893 original size:58 final size:57
Alignment explanation
Indices: 73845819--73846229 Score: 230
Period size: 58 Copynumber: 7.4 Consensus size: 57
73845809 ACTTTCGTAG
* * **
73845819 CATCTTTCGTCTATGGTCTTATGCCATATACCTTATACCTTATACCATACAGCCATGA
1 CATCTTTCATCCATGGTCTTACACCATATACCTTATACCTTATACCAT-CAGCCATGA
* * * *
73845877 CATCTTTCATCCATGGTCTTACACCAAATACCTTGTACC-T-T-GCAGTC-G---TGG
1 CATCTTTCATCCATGGTCTTACACCATATACCTTATACCTTATACCA-TCAGCCATGA
* * * * *
73845928 CATCTTTCATTCATGGTCTTACACCAAATACCTTATACATTGTACCATGTC-GCCATGG
1 CATCTTTCATCCATGGTCTTACACCATATACCTTATACCTTATACCA--TCAGCCATGA
* * * *
73845986 CATCTTTCATCCATGGTCTTACACTGA-ATACTTTATACCTTATACCATCTGTCATGGGA
1 CATCTTTCATCCATGGTCTTACAC-CATATACCTTATACCTTATACCATCAGCCAT--GA
* * * * * *
73846045 C-T-TTTCATCTATGGTTTTACACTGA-ATACCTTATACCTTATACCATCTGTCATGG
1 CATCTTTCATCCATGGTCTTACAC-CATATACCTTATACCTTATACCATCAGCCATGA
* * * ** * * * ** * *
73846100 GACCTTTCATCTATGGTCTTATGCTATGTACCTCATACC--AGGCTATCA--TA-G-
1 CATCTTTCATCCATGGTCTTACACCATATACCTTATACCTTATACCATCAGCCATGA
* * * * *
73846151 CCTCTTTCATCTATGGTCTTACGCCATATACCTTTTACCTTGTACCATTCCA-CCATGA
1 CATCTTTCATCCATGGTCTTACACCATATACCTTATACCTTATACCA-T-CAGCCATGA
*
73846209 CATCTTTCATCCATGATCTTA
1 CATCTTTCATCCATGGTCTTA
73846230 TGCTATGTAC
Statistics
Matches: 279, Mismatches: 52, Indels: 44
0.74 0.14 0.12
Matches are distributed among these distances:
51 69 0.25
52 2 0.01
53 4 0.01
54 4 0.01
55 15 0.05
56 6 0.02
57 81 0.29
58 95 0.34
59 3 0.01
ACGTcount: A:0.24, C:0.27, G:0.12, T:0.37
Consensus pattern (57 bp):
CATCTTTCATCCATGGTCTTACACCATATACCTTATACCTTATACCATCAGCCATGA
Found at i:73845935 original size:51 final size:54
Alignment explanation
Indices: 73845877--73846023 Score: 183
Period size: 51 Copynumber: 2.7 Consensus size: 54
73845867 ACAGCCATGA
* *
73845877 CATCTTTCATCCATGGTCTTACACCAAATACCTTGTACCTTG-CA-GTCG-TGG
1 CATCTTTCATCCATGGTCTTACACCAAATACCTTATACATTGACATGTCGCTGG
*
73845928 CATCTTTCATTCATGGTCTTACACCAAATACCTTATACATTGTACCATGTCGCCATGG
1 CATCTTTCATCCATGGTCTTACACCAAATACCTTATACATTG-A-CATGTCG-C-TGG
** *
73845986 CATCTTTCATCCATGGTCTTACACTGAATACTTTATAC
1 CATCTTTCATCCATGGTCTTACACCAAATACCTTATAC
73846024 CTTATACCAT
Statistics
Matches: 82, Mismatches: 7, Indels: 7
0.85 0.07 0.07
Matches are distributed among these distances:
51 39 0.48
54 2 0.02
55 4 0.05
58 37 0.45
ACGTcount: A:0.24, C:0.28, G:0.12, T:0.35
Consensus pattern (54 bp):
CATCTTTCATCCATGGTCTTACACCAAATACCTTATACATTGACATGTCGCTGG
Found at i:73846132 original size:57 final size:57
Alignment explanation
Indices: 73845931--73846120 Score: 247
Period size: 57 Copynumber: 3.3 Consensus size: 57
73845921 GTCGTGGCAT
** * * * * * *
73845931 CTTTCAT-TCATGGTCTTACACCAAATACCTTATACATTGTACCATGTCGCCATGGCAT
1 CTTTCATCT-ATGGTCTTACACTGAATACCTTATACCTTATACCATCT-GTCATGGGAC
* *
73845989 CTTTCATCCATGGTCTTACACTGAATACTTTATACCTTATACCATCTGTCATGGGAC
1 CTTTCATCTATGGTCTTACACTGAATACCTTATACCTTATACCATCTGTCATGGGAC
* *
73846046 TTTTCATCTATGGTTTTACACTGAATACCTTATACCTTATACCATCTGTCATGGGAC
1 CTTTCATCTATGGTCTTACACTGAATACCTTATACCTTATACCATCTGTCATGGGAC
73846103 CTTTCATCTATGGTCTTA
1 CTTTCATCTATGGTCTTA
73846121 TGCTATGTAC
Statistics
Matches: 115, Mismatches: 16, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
57 76 0.66
58 39 0.34
ACGTcount: A:0.24, C:0.25, G:0.12, T:0.38
Consensus pattern (57 bp):
CTTTCATCTATGGTCTTACACTGAATACCTTATACCTTATACCATCTGTCATGGGAC
Found at i:73846164 original size:51 final size:50
Alignment explanation
Indices: 73846103--73846279 Score: 147
Period size: 51 Copynumber: 3.4 Consensus size: 50
73846093 GTCATGGGAC
73846103 CTTTCATCTATGGTCTTATGCTATGTACCTCATACCAGGCTATCATAGCCT
1 CTTTCATCTATGGTCTTATGCTATGTACCTC-TACCAGGCTATCATAGCCT
* * * * * * * * *
73846154 CTTTCATCTATGGTCTTACGCCATATACCTTTTACCTTGTACCATTCCACCATGACAT
1 CTTTCATCTATGGTCTTATGCTATGTACC-TCTACC-AG-GCTA-T-CA-TA-G-CCT
* * * *
73846212 CTTTCATCCATGATCTTATGCTATGTACCTCTACCAGGCTACCATAGTCT
1 CTTTCATCTATGGTCTTATGCTATGTACCTCTACCAGGCTATCATAGCCT
*
73846262 CTTTCATATATGGTCTTA
1 CTTTCATCTATGGTCTTA
73846280 CGCCATATAT
Statistics
Matches: 93, Mismatches: 25, Indels: 17
0.69 0.19 0.13
Matches are distributed among these distances:
50 16 0.17
51 31 0.33
52 3 0.03
53 4 0.04
54 1 0.01
55 4 0.04
56 2 0.02
57 6 0.06
58 26 0.28
ACGTcount: A:0.22, C:0.28, G:0.11, T:0.38
Consensus pattern (50 bp):
CTTTCATCTATGGTCTTATGCTATGTACCTCTACCAGGCTATCATAGCCT
Found at i:73850454 original size:22 final size:22
Alignment explanation
Indices: 73850429--73850472 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
73850419 ACGTCTATCC
73850429 GTGGTTGTCAAGTGAGTTTCTA
1 GTGGTTGTCAAGTGAGTTTCTA
*
73850451 GTGGTTTTCAAGTGAGTTTCTA
1 GTGGTTGTCAAGTGAGTTTCTA
73850473 AGCTAACTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.18, C:0.09, G:0.30, T:0.43
Consensus pattern (22 bp):
GTGGTTGTCAAGTGAGTTTCTA
Found at i:73853518 original size:13 final size:13
Alignment explanation
Indices: 73853500--73853535 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
73853490 GTTGAATATG
73853500 TATATGAAATGGT
1 TATATGAAATGGT
73853513 TATATGAAATGGT
1 TATATGAAATGGT
* *
73853526 CATTTGAAAT
1 TATATGAAAT
73853536 TGATACTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.39, C:0.03, G:0.19, T:0.39
Consensus pattern (13 bp):
TATATGAAATGGT
Found at i:73857102 original size:48 final size:46
Alignment explanation
Indices: 73857003--73857224 Score: 186
Period size: 44 Copynumber: 4.7 Consensus size: 46
73856993 TGTGTGTGCT
* *
73857003 AGTGTAAGACATGTCTGGGACATGCGTCGGCCACATT---ATGAGAGCC
1 AGTGTAAGACATGTCTAGGACATGCATCGG---CATTGAGATGAGAGCC
* *
73857049 AGTGTAAGATCATGTCTAGGACATGGCACCGGCATTGAGATGAGAGCT
1 AGTGTAAGA-CATGTCTAGGACAT-GCATCGGCATTGAGATGAGAGCC
* * * *
73857097 AGTGTAAGACATGTCTGGGACATGCATCGAC-TATGAGAT--GTGCT
1 AGTGTAAGACATGTCTAGGACATGCATCGGCAT-TGAGATGAGAGCC
* * ** *
73857141 AGTGTAAGACATATCTGGGACATGCATCGGCACGGATATGTGAGAGCC
1 AGTGTAAGACATGTCTAGGACATGCATCGGCATTGAGA--TGAGAGCC
*
73857189 AATGTAAGACCATGTCTAGGACATGGCATCGGCATT
1 AGTGTAAGA-CATGTCTAGGACAT-GCATCGGCATT
73857225 ATACCCTATG
Statistics
Matches: 143, Mismatches: 20, Indels: 22
0.77 0.11 0.12
Matches are distributed among these distances:
44 36 0.25
45 5 0.03
46 22 0.15
47 26 0.18
48 33 0.23
49 12 0.08
50 9 0.06
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTAGGACATGCATCGGCATTGAGATGAGAGCC
Found at i:73859614 original size:40 final size:40
Alignment explanation
Indices: 73859570--73859652 Score: 166
Period size: 40 Copynumber: 2.1 Consensus size: 40
73859560 GCTTTCCCAG
73859570 GATGATAATTAATTATTCAATCATAATCTTTTAGCAGCTT
1 GATGATAATTAATTATTCAATCATAATCTTTTAGCAGCTT
73859610 GATGATAATTAATTATTCAATCATAATCTTTTAGCAGCTT
1 GATGATAATTAATTATTCAATCATAATCTTTTAGCAGCTT
73859650 GAT
1 GAT
73859653 CCAACAATGT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.35, C:0.12, G:0.11, T:0.42
Consensus pattern (40 bp):
GATGATAATTAATTATTCAATCATAATCTTTTAGCAGCTT
Found at i:73864402 original size:31 final size:31
Alignment explanation
Indices: 73864366--73864426 Score: 113
Period size: 31 Copynumber: 2.0 Consensus size: 31
73864356 AATTAATAAT
*
73864366 CACAAATGATAATAAATTTTATATAATTAAA
1 CACAAATAATAATAAATTTTATATAATTAAA
73864397 CACAAATAATAATAAATTTTATATAATTAA
1 CACAAATAATAATAAATTTTATATAATTAA
73864427 TTATAAGCAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.56, C:0.07, G:0.02, T:0.36
Consensus pattern (31 bp):
CACAAATAATAATAAATTTTATATAATTAAA
Found at i:73864438 original size:35 final size:31
Alignment explanation
Indices: 73864367--73864445 Score: 104
Period size: 31 Copynumber: 2.4 Consensus size: 31
73864357 ATTAATAATC
* *
73864367 ACAAATGATAATAAATTTTATATAATTAAAC
1 ACAAATAATAATAAATTTTATATAATTAAAA
73864398 ACAAATAATAATAAATTTTATATAATTAATTATA
1 ACAAATAATAATAAATTTTATATAATTAA--A-A
73864432 AGCAAATAATAATA
1 A-CAAATAATAATA
73864446 TGATTAATAA
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
31 28 0.67
33 1 0.02
34 1 0.02
35 12 0.29
ACGTcount: A:0.57, C:0.05, G:0.03, T:0.35
Consensus pattern (31 bp):
ACAAATAATAATAAATTTTATATAATTAAAA
Found at i:73867385 original size:30 final size:30
Alignment explanation
Indices: 73867349--73867411 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
73867339 ACTTAACAAG
**
73867349 CAAATGTCTCTAAAATATTAACAAAATTAA
1 CAAATGTCTCTAAAATAAGAACAAAATTAA
*
73867379 CAAATGTCTTTAAAATAAGAACAAAATTAA
1 CAAATGTCTCTAAAATAAGAACAAAATTAA
73867409 CAA
1 CAA
73867412 TAAAATAAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.56, C:0.13, G:0.05, T:0.27
Consensus pattern (30 bp):
CAAATGTCTCTAAAATAAGAACAAAATTAA
Found at i:73867797 original size:13 final size:13
Alignment explanation
Indices: 73867779--73867814 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 13
73867769 TAGATTTTTC
73867779 CTAAATATTATCA
1 CTAAATATTATCA
73867792 CTAAATA--ATC-
1 CTAAATATTATCA
73867802 CTAAATATTATCA
1 CTAAATATTATCA
73867815 TTTCAAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 6
0.77 0.00 0.23
Matches are distributed among these distances:
10 7 0.35
11 3 0.15
12 3 0.15
13 7 0.35
ACGTcount: A:0.47, C:0.17, G:0.00, T:0.36
Consensus pattern (13 bp):
CTAAATATTATCA
Found at i:73868204 original size:16 final size:16
Alignment explanation
Indices: 73868183--73868236 Score: 81
Period size: 16 Copynumber: 3.4 Consensus size: 16
73868173 TTTGGTTGGT
*
73868183 TGTAATGGAATAGGGC
1 TGTAATGGAATAGAGC
*
73868199 TGTAATTGAATAGAGC
1 TGTAATGGAATAGAGC
*
73868215 CGTAATGGAATAGAGC
1 TGTAATGGAATAGAGC
73868231 TGTAAT
1 TGTAAT
73868237 AAGTAATTCA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.35, C:0.07, G:0.30, T:0.28
Consensus pattern (16 bp):
TGTAATGGAATAGAGC
Found at i:73868270 original size:46 final size:43
Alignment explanation
Indices: 73868218--73868310 Score: 114
Period size: 43 Copynumber: 2.1 Consensus size: 43
73868208 ATAGAGCCGT
*
73868218 AATGGAATAGAGCTGTAATAAGTAATTCAACTGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAAT-AGT-A-TCAACTGTTTGGTTGAATGG
* ***
73868264 AATGGAATAGAATTGTAATAGTATCTTGTGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAATAGTATCAACTGTTTGGTTGAATGG
73868307 AATG
1 AATG
73868311 ATGTTGTAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
43 21 0.50
44 1 0.02
45 3 0.07
46 17 0.40
ACGTcount: A:0.33, C:0.04, G:0.27, T:0.35
Consensus pattern (43 bp):
AATGGAATAGAACTGTAATAGTATCAACTGTTTGGTTGAATGG
Found at i:73881634 original size:23 final size:23
Alignment explanation
Indices: 73881608--73881655 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
73881598 GATTAAGTCC
73881608 TATTATTATATTAAGCATACAAA
1 TATTATTATATTAAGCATACAAA
73881631 TATTATTATATTAAGCATACAAA
1 TATTATTATATTAAGCATACAAA
73881654 TA
1 TA
73881656 ATCAAATTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.48, C:0.08, G:0.04, T:0.40
Consensus pattern (23 bp):
TATTATTATATTAAGCATACAAA
Found at i:73886500 original size:45 final size:45
Alignment explanation
Indices: 73886450--73886536 Score: 158
Period size: 45 Copynumber: 1.9 Consensus size: 45
73886440 GTTAAAACAT
73886450 ATGTCACATATATCATGAACTCAGACCACAACTCT-ATGAGTTTGG
1 ATGTCACATATATCATGAACTCAGACCACAACT-TAATGAGTTTGG
73886495 ATGTCACATATATCATGAACTCAGACCACAACTTAATGAGTT
1 ATGTCACATATATCATGAACTCAGACCACAACTTAATGAGTT
73886537 CAGATTACAT
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
44 1 0.02
45 40 0.98
ACGTcount: A:0.36, C:0.22, G:0.14, T:0.29
Consensus pattern (45 bp):
ATGTCACATATATCATGAACTCAGACCACAACTTAATGAGTTTGG
Found at i:73892800 original size:5 final size:6
Alignment explanation
Indices: 73892785--73892810 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
73892775 TGACATGGTG
73892785 GGGGGA GGGGGA GGGGGA GGGGGA GG
1 GGGGGA GGGGGA GGGGGA GGGGGA GG
73892811 ATTAAAGATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.85, T:0.00
Consensus pattern (6 bp):
GGGGGA
Found at i:73898167 original size:33 final size:33
Alignment explanation
Indices: 73898129--73898194 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
73898119 GCCTGAGTGG
73898129 GAGTGTTTGGTTGCTGGACAGGAGCTGGAATGT
1 GAGTGTTTGGTTGCTGGACAGGAGCTGGAATGT
73898162 GAGTGTTTGGTTGCTGGACAGGAGCTGGAATGT
1 GAGTGTTTGGTTGCTGGACAGGAGCTGGAATGT
73898195 CAAGAAGAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.18, C:0.09, G:0.42, T:0.30
Consensus pattern (33 bp):
GAGTGTTTGGTTGCTGGACAGGAGCTGGAATGT
Found at i:73903369 original size:26 final size:26
Alignment explanation
Indices: 73903340--73903392 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
73903330 TTTTTAACTG
73903340 TAATGATGCAGTTTTTATTGAGCCTT
1 TAATGATGCAGTTTTTATTGAGCCTT
73903366 TAATGATGCAGTTTTTATTGAGCCTT
1 TAATGATGCAGTTTTTATTGAGCCTT
73903392 T
1 T
73903393 CTCATAAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.23, C:0.11, G:0.19, T:0.47
Consensus pattern (26 bp):
TAATGATGCAGTTTTTATTGAGCCTT
Found at i:73909560 original size:13 final size:13
Alignment explanation
Indices: 73909544--73909569 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
73909534 AGAAGAATGA
73909544 ATTGATTCCTACC
1 ATTGATTCCTACC
73909557 ATTGATTCCTACC
1 ATTGATTCCTACC
73909570 CACATAGTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.31, G:0.08, T:0.38
Consensus pattern (13 bp):
ATTGATTCCTACC
Found at i:73911494 original size:27 final size:27
Alignment explanation
Indices: 73911480--73911661 Score: 247
Period size: 27 Copynumber: 6.7 Consensus size: 27
73911470 ATTTGTAGAT
* *
73911480 TTACCATTTTACCCTCGATTTATAGAA
1 TTACCATTTTACCCTCGATTTACAAAA
* * ** *
73911507 TTACCGTTTCACCCTTAATTTGCAAAA
1 TTACCATTTTACCCTCGATTTACAAAA
* * * *
73911534 TTATCGTTTTACCCTCGATTTATAGAA
1 TTACCATTTTACCCTCGATTTACAAAA
*
73911561 TTACCATTTTACCCTCGATTTAAAAAA
1 TTACCATTTTACCCTCGATTTACAAAA
73911588 TTACCATTTTACCCTCGATTTACAAAA
1 TTACCATTTTACCCTCGATTTACAAAA
*
73911615 TTACCATTTTACCCTTGATTTACAAAA
1 TTACCATTTTACCCTCGATTTACAAAA
73911642 TTACCATTTTACCCTCGATT
1 TTACCATTTTACCCTCGATT
73911662 GTGAAATTAC
Statistics
Matches: 134, Mismatches: 21, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 134 1.00
ACGTcount: A:0.30, C:0.24, G:0.06, T:0.40
Consensus pattern (27 bp):
TTACCATTTTACCCTCGATTTACAAAA
Found at i:73911544 original size:54 final size:54
Alignment explanation
Indices: 73911480--73911661 Score: 274
Period size: 54 Copynumber: 3.4 Consensus size: 54
73911470 ATTTGTAGAT
* * * *
73911480 TTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTTAATTTGCAAAA
1 TTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTTGATTTACAAAA
* * * *
73911534 TTATCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTAAAAAA
1 TTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTTGATTTACAAAA
* *
73911588 TTACCATTTTACCCTCGATTTACAAAATTACCATTTTACCCTTGATTTACAAAA
1 TTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTTGATTTACAAAA
73911642 TTACCATTTTACCCTCGATT
1 TTACCATTTTACCCTCGATT
73911662 GTGAAATTAC
Statistics
Matches: 114, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 114 1.00
ACGTcount: A:0.30, C:0.24, G:0.06, T:0.40
Consensus pattern (54 bp):
TTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTTGATTTACAAAA
Found at i:73911723 original size:27 final size:27
Alignment explanation
Indices: 73911693--73911872 Score: 168
Period size: 27 Copynumber: 6.7 Consensus size: 27
73911683 TATAGGATAG
*
73911693 AATTACCACAATACCCTTAGTTTGTAA
1 AATTACCAAAATACCCTTAGTTTGTAA
* * *
73911720 AATTACCAAAACACCCCTAGTTAGTAA
1 AATTACCAAAATACCCTTAGTTTGTAA
* *
73911747 AATTACCAAAATACCAC-TGGTTTGTGA
1 AATTACCAAAATACC-CTTAGTTTGTAA
* * *
73911774 AGTTACCAAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCCTTAGTTTGTAA
* * **
73911801 AATTACCAAAATACCCCTAATTTACAA
1 AATTACCAAAATACCCTTAGTTTGTAA
*
73911828 AATTA-CAGAAATACCCTT-GATTTGTAG
1 AATTACCA-AAATACCCTTAG-TTTGTAA
* *
73911855 ATTTACCAAAACACCCTT
1 AATTACCAAAATACCCTT
73911873 GTAGGATGAA
Statistics
Matches: 123, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 3 0.02
27 117 0.95
28 3 0.02
ACGTcount: A:0.41, C:0.23, G:0.08, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCCTTAGTTTGTAA
Done.