Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 215 of 295
Found at i:73911738 original size:54 final size:53
Alignment explanation
Indices: 73911660--73911815 Score: 154
Period size: 54 Copynumber: 2.9 Consensus size: 53
73911650 TTACCCTCGA
** * *
73911660 TTGTGAAATTACTGAAATACCCCTA-TAGGATAGAATTACCACAATACC-CTTAGT
1 TTGTGAAATTACCAAAATACCCCTAGTA-G-TAAAATTACCAAAATACCAC-TAGT
* * *
73911714 TTGTAAAATTACCAAAACACCCCTAGTTAGTAAAATTACCAAAATACCACTGGT
1 TTGTGAAATTACCAAAATACCCCTAG-TAGTAAAATTACCAAAATACCACTAGT
* * * *
73911768 TTGTGAAGTTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACC
1 TTGTGAAATTACCAAAATACCC-CTAGTAGTAAAATTACCAAAATACC
73911816 CCTAATTTAC
Statistics
Matches: 85, Mismatches: 13, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
54 79 0.93
55 4 0.05
56 2 0.02
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.28
Consensus pattern (53 bp):
TTGTGAAATTACCAAAATACCCCTAGTAGTAAAATTACCAAAATACCACTAGT
Found at i:73911852 original size:81 final size:81
Alignment explanation
Indices: 73911690--73911871 Score: 210
Period size: 81 Copynumber: 2.2 Consensus size: 81
73911680 CCCTATAGGA
* * * * *
73911690 TAGAATTACCACAATACCCTTAGTTTGTAAAATTACCAAAACACCCCTAGTTAGTAAAATTACCA
1 TAGAGTTACCAAAATACCCTCAATTTGTAAAATTACCAAAACACCCCTAGTTAGCAAAATTACCA
*
73911755 AAATACCACTGGTTTG
66 AAATACCACTGATTTG
* *
73911771 T-GAAGTTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAATTTA-CAAAATTA-
1 TAG-AGTTACCAAAATACCCTCAATTTGTAAAATTACCAAAACACCCCT-AGTTAGCAAAATTAC
73911833 CAGAAATACC-CTTGATTTG
64 CA-AAATACCAC-TGATTTG
* *
73911852 TAGATTTACCAAAACACCCT
1 TAGAGTTACCAAAATACCCT
73911872 TGTAGGATGA
Statistics
Matches: 86, Mismatches: 10, Indels: 10
0.81 0.09 0.09
Matches are distributed among these distances:
80 4 0.05
81 77 0.90
82 5 0.06
ACGTcount: A:0.41, C:0.23, G:0.08, T:0.29
Consensus pattern (81 bp):
TAGAGTTACCAAAATACCCTCAATTTGTAAAATTACCAAAACACCCCTAGTTAGCAAAATTACCA
AAATACCACTGATTTG
Found at i:73912742 original size:20 final size:20
Alignment explanation
Indices: 73912676--73912742 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
73912666 ATTTTAGTAA
*
73912676 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
73912696 ACATGACATGTATGCTATGC
1 ACATGATATGTATGATATGC
73912716 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
73912736 ACATGAT
1 ACATGAT
73912743 GTATTCATAA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.33, C:0.13, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:73912823 original size:23 final size:23
Alignment explanation
Indices: 73912793--73912865 Score: 128
Period size: 23 Copynumber: 3.1 Consensus size: 23
73912783 AGGAAGTGCA
73912793 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
73912816 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
73912839 AAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
73912863 AAA
1 AAA
73912866 AGAGGCTAGG
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
23 26 0.54
24 22 0.46
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.30
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:73912882 original size:25 final size:24
Alignment explanation
Indices: 73912792--73912886 Score: 140
Period size: 24 Copynumber: 4.0 Consensus size: 24
73912782 GAGGAAGTGC
73912792 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
73912816 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
73912839 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
73912863 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
73912887 ATGAAAAGCA
Statistics
Matches: 65, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
23 23 0.35
24 31 0.48
25 11 0.17
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:73913117 original size:31 final size:31
Alignment explanation
Indices: 73913079--73913142 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
73913069 CGTTTACAGT
73913079 AAAGGCTTCGACCCAGTAATATGAAATATGA
1 AAAGGCTTCGACCCAGTAATATGAAATATGA
* **
73913110 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGACCCAGTAATATGAAATATGA
73913141 AA
1 AA
73913143 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGACCCAGTAATATGAAATATGA
Found at i:73919833 original size:13 final size:13
Alignment explanation
Indices: 73919815--73919842 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
73919805 ACATATTATA
73919815 AATATTTTGTGTT
1 AATATTTTGTGTT
73919828 AATATTTTGTGTT
1 AATATTTTGTGTT
73919841 AA
1 AA
73919843 AAATAATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.14, T:0.57
Consensus pattern (13 bp):
AATATTTTGTGTT
Found at i:73921307 original size:40 final size:40
Alignment explanation
Indices: 73921259--73921464 Score: 344
Period size: 40 Copynumber: 5.2 Consensus size: 40
73921249 GGACTAAGAT
73921259 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
73921299 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
73921339 CCGAAGGCATTTGTGCTAGTGACCATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
73921379 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
73921419 CCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTC
73921458 CCGAAGG
1 CCGAAGG
73921465 TACTTGGGTT
Statistics
Matches: 157, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 15 0.10
40 140 0.89
41 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
Found at i:73926292 original size:19 final size:19
Alignment explanation
Indices: 73926268--73926305 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
73926258 TAAAATTAGT
73926268 TTTTCTAAAAATATT-TTTA
1 TTTTCT-AAAATATTATTTA
*
73926287 TTTTCTGAAATATTATTTA
1 TTTTCTAAAATATTATTTA
73926306 CAGATTTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.34, C:0.05, G:0.03, T:0.58
Consensus pattern (19 bp):
TTTTCTAAAATATTATTTA
Found at i:73927303 original size:42 final size:42
Alignment explanation
Indices: 73927239--73927324 Score: 109
Period size: 42 Copynumber: 2.0 Consensus size: 42
73927229 AGGGAGCATA
* * * **
73927239 ATCACTTCAGCTCATATGGGGAGCTTCGTTGATACACAACTT
1 ATCACTTAAACTCATATAGGGAGCTTCACTGATACACAACTT
* *
73927281 ATCACTTAAACTCATGTAGGGAGCTTCACTGATACCCAACTT
1 ATCACTTAAACTCATATAGGGAGCTTCACTGATACACAACTT
73927323 AT
1 AT
73927325 AAAACCATTT
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.30
Consensus pattern (42 bp):
ATCACTTAAACTCATATAGGGAGCTTCACTGATACACAACTT
Found at i:73928877 original size:20 final size:20
Alignment explanation
Indices: 73928828--73928869 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 20
73928818 GTTCGTGTAA
73928828 TTAAATTGTACATTTATATGTT
1 TTAAATTG-A-ATTTATATGTT
73928850 TTAAATTGAATTT-TATGTT
1 TTAAATTGAATTTATATGTT
73928869 T
1 T
73928870 GTGAATTGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 7 0.35
20 4 0.20
21 1 0.05
22 8 0.40
ACGTcount: A:0.31, C:0.02, G:0.10, T:0.57
Consensus pattern (20 bp):
TTAAATTGAATTTATATGTT
Found at i:73929088 original size:25 final size:25
Alignment explanation
Indices: 73929006--73929088 Score: 58
Period size: 25 Copynumber: 3.3 Consensus size: 25
73928996 TAGCTCGTAT
** * * *
73929006 GAGCTTACCAATACTCAGCTTGCAT
1 GAGCTTACCGTTATTCAGCTTGGAA
** * * *
73929031 GAGCTTGTCGTTATTTAGATCGGAA
1 GAGCTTACCGTTATTCAGCTTGGAA
* *
73929056 GAGTTTACCGTTATTCAGCTTGGAG
1 GAGCTTACCGTTATTCAGCTTGGAA
73929081 GAGCTTAC
1 GAGCTTAC
73929089 TGTTTACAAC
Statistics
Matches: 40, Mismatches: 18, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (25 bp):
GAGCTTACCGTTATTCAGCTTGGAA
Found at i:73932277 original size:29 final size:29
Alignment explanation
Indices: 73932233--73932290 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
73932223 TTAAAATGTC
73932233 AGAATAGTGAGACATTTCATATTGAATCA
1 AGAATAGTGAGACATTTCATATTGAATCA
* *
73932262 AGAATAGTTAGGCATTTCATATTGAATCA
1 AGAATAGTGAGACATTTCATATTGAATCA
73932291 GATAATCCGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.40, C:0.10, G:0.17, T:0.33
Consensus pattern (29 bp):
AGAATAGTGAGACATTTCATATTGAATCA
Found at i:73934788 original size:29 final size:29
Alignment explanation
Indices: 73934756--73934814 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 29
73934746 GATCCGAGAT
* *
73934756 AGTTTGAAAGTAGCTTCAGATCGTTAGAA
1 AGTTTGAAAGTAGCTTCAAATCATTAGAA
73934785 AGTTTGAAAGTAGCTTCAAATCATTAGAA
1 AGTTTGAAAGTAGCTTCAAATCATTAGAA
73934814 A
1 A
73934815 TCATATGCGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.39, C:0.10, G:0.20, T:0.31
Consensus pattern (29 bp):
AGTTTGAAAGTAGCTTCAAATCATTAGAA
Found at i:73936593 original size:25 final size:25
Alignment explanation
Indices: 73936508--73936625 Score: 76
Period size: 25 Copynumber: 4.8 Consensus size: 25
73936498 TTTTGATTTT
* * * * *
73936508 AGCTCGTATGAGCTTACTGATACTC
1 AGCTCGAAAGAGCTTACCGTTATTC
* * * *
73936533 AGCTCGCATGAGCTTACCGTAATTT
1 AGCTCGAAAGAGCTTACCGTTATTC
* * *
73936558 AGATCGGAAGAGTTTACCGTTATTC
1 AGCTCGAAAGAGCTTACCGTTATTC
* * *
73936583 AGCTCGAAAGAGGTTACCATT-TAC
1 AGCTCGAAAGAGCTTACCGTTATTC
* *
73936607 AGCTCGTAAGAGCATACCG
1 AGCTCGAAAGAGCTTACCG
73936626 ATTCAGAAGT
Statistics
Matches: 72, Mismatches: 21, Indels: 1
0.77 0.22 0.01
Matches are distributed among these distances:
24 17 0.24
25 55 0.76
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (25 bp):
AGCTCGAAAGAGCTTACCGTTATTC
Found at i:73950068 original size:39 final size:39
Alignment explanation
Indices: 73950014--73950245 Score: 220
Period size: 39 Copynumber: 6.0 Consensus size: 39
73950004 CAGTGATGTT
* *
73950014 TATCCAGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* * *
73950053 TATCCGGACTTAGGGTCCGCAGGCTATGTGTTAGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
*
73950092 TATCCGAACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* * * * *
73950131 TAACCGGGCTTAAGGTCTGCAGGCTACGTGCTGGAAATA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* * * * * *
73950170 TGTCCGGGC-TAAAGTCTGCAGGCT-TCGAGCTGGTATTA
1 TATCCGGACTTAAGGTCCGCAGGCTAT-GTGCTGGAATTA
** **
73950208 TA-CCGGGTTTAAATTCTCGCAGGCT-TGTGCTGGTAATT
1 TATCCGGACTTAAGGTC-CGCAGGCTATGTGCTGG-AATT
73950246 GGTTTCAAGT
Statistics
Matches: 163, Mismatches: 26, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
37 5 0.03
38 36 0.22
39 122 0.75
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (39 bp):
TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
Found at i:73958386 original size:39 final size:39
Alignment explanation
Indices: 73958329--73958485 Score: 197
Period size: 39 Copynumber: 4.0 Consensus size: 39
73958319 TGTTTATCTG
*
73958329 GACTTAGGGTCCACAGGCTATGTGCTGGAATTATATCCA
1 GACTTAAGGTCCACAGGCTATGTGCTGGAATTATATCCA
* * *
73958368 GACTTAGGGTCCATAGGCTATGTGCTGGAATTATATCCG
1 GACTTAAGGTCCACAGGCTATGTGCTGGAATTATATCCA
* * * *
73958407 GACTTAAGGTCCGCAGGCTATGTGCTGGAATTACAACCG
1 GACTTAAGGTCCACAGGCTATGTGCTGGAATTATATCCA
* * * * *
73958446 GACTTAAGGTTCGCAGGCTACGTGCTGGAAATATGTCCA
1 GACTTAAGGTCCACAGGCTATGTGCTGGAATTATATCCA
73958485 G
1 G
73958486 GCTAAAGTCC
Statistics
Matches: 104, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 104 1.00
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (39 bp):
GACTTAAGGTCCACAGGCTATGTGCTGGAATTATATCCA
Found at i:73958501 original size:78 final size:78
Alignment explanation
Indices: 73958323--73958503 Score: 195
Period size: 78 Copynumber: 2.3 Consensus size: 78
73958313 CATTGATGTT
* ** * * * * *
73958323 TATCTGGACTTAGGGTCCACAGGCTATGTGCTGGAATTATATCCAGACTTAGGGTCCATAGGCTA
1 TATCCGGACTTAAAGTCCGCAGGCTATGTGCTGGAATTACAACCAGACTTAAGGTCCACAGGCTA
* *
73958388 TGTGCTGGAATTA
66 CGTGCTGGAAATA
* * * *
73958401 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTACAACCGGACTTAAGGTTCGCAGGCTA
1 TATCCGGACTTAAAGTCCGCAGGCTATGTGCTGGAATTACAACCAGACTTAAGGTCCACAGGCTA
73958466 CGTGCTGGAAATA
66 CGTGCTGGAAATA
*
73958479 TGTCCAGG-C-TAAAGTCCTGCAGGCT
1 TATCC-GGACTTAAAGTCC-GCAGGCT
73958504 TCGAGCTGGT
Statistics
Matches: 87, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
77 7 0.08
78 78 0.90
79 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (78 bp):
TATCCGGACTTAAAGTCCGCAGGCTATGTGCTGGAATTACAACCAGACTTAAGGTCCACAGGCTA
CGTGCTGGAAATA
Found at i:73960179 original size:47 final size:48
Alignment explanation
Indices: 73960083--73960211 Score: 156
Period size: 47 Copynumber: 2.8 Consensus size: 48
73960073 GTGCGAATAA
* * * * * *
73960083 TACCTTGATTTTGCTAC-GGCCGTGGTAGAGGTA-TTCAGAGAGGAGT
1 TACCTTGATTTGGCTACGGGCCATGGTAAAGGTACTCCAGAGAGAACT
* *
73960129 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCCAG-GATAACT
1 TACCTTGATTTGGCTACGGGCCATGGTAAAGGTACTCCAGAGAGAACT
*
73960176 TACCTTGATTTGGCTATGGGCCATGGTAAAGGTACT
1 TACCTTGATTTGGCTACGGGCCATGGTAAAGGTACT
73960212 TATCGATTAA
Statistics
Matches: 72, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
46 16 0.22
47 52 0.72
48 4 0.06
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.31
Consensus pattern (48 bp):
TACCTTGATTTGGCTACGGGCCATGGTAAAGGTACTCCAGAGAGAACT
Found at i:73962117 original size:43 final size:42
Alignment explanation
Indices: 73961960--73962118 Score: 142
Period size: 43 Copynumber: 3.7 Consensus size: 42
73961950 TATGTGTTTT
* * *
73961960 CGTGTGAGACCACATCTGGGACATTGGCATCGGCT-TATGATTTA
1 CGTGTAAGACCACGTCTGGGACATTGGCATC--CTATTTGA-TTA
* * * * *
73962004 CGTGTAAGACCACGTCTAGGACGTTAGCATCGTATTTGATTT
1 CGTGTAAGACCACGTCTGGGACATTGGCATCCTATTTGATTA
* * *
73962046 CGTGTAAGACC-CTGTCTGGAACAATGGCATCACTATTTTATTA
1 CGTGTAAGACCAC-GTCTGGGACATTGGCATC-CTATTTGATTA
* *
73962089 CATGTAAGACCACGTCTGGGACGTTGGCAT
1 CGTGTAAGACCACGTCTGGGACATTGGCAT
73962119 TGTATGAGCT
Statistics
Matches: 91, Mismatches: 20, Indels: 9
0.76 0.17 0.08
Matches are distributed among these distances:
41 1 0.01
42 27 0.30
43 36 0.40
44 27 0.30
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.30
Consensus pattern (42 bp):
CGTGTAAGACCACGTCTGGGACATTGGCATCCTATTTGATTA
Found at i:73965691 original size:137 final size:138
Alignment explanation
Indices: 73965307--73965821 Score: 744
Period size: 137 Copynumber: 3.8 Consensus size: 138
73965297 CATGAATTAA
* * *
73965307 ATTAATTGTATATATTTTACCGAATTTATTAATATAAATAGTTATATTAATTAATTTCAGTCAAA
1 ATTAATTGTATATATTTTACCGAATTTATTAATATAAACAATTATATTAATTAATTTCGGTCAAA
* * *
73965372 ATATAAGAGACATG-------GTATTCTTTTGGAAAGAATATAATTAATATATGAATTTGATTCA
66 ATATAAAAGACATGAAAATTAATATTGTTTTGGAAAGAATATAATTAATATATGAATTTGATTCA
73965430 TACAAAAT
131 TACAAAAT
* * *
73965438 ATTAATTGTATATATTTTACCGAATTTATTTATATAAACAATTATATTAATTAATTTCAGTAAAA
1 ATTAATTGTATATATTTTACCGAATTTATTAATATAAACAATTATATTAATTAATTTCGGTCAAA
*
73965503 ATATAAAAGACATGAAAATTAATATTGTTTTGGAAAGAATATGATTAATATATGAATTTGATTCA
66 ATATAAAAGACATGAAAATTAATATTGTTTTGGAAAGAATATAATTAATATATGAATTTGATTCA
*
73965568 TAAAAAAT
131 TACAAAAT
* *
73965576 ATTAATTGTATATATTTTACCGAATTTATTAATATAAA-ATTTATATTAATTAATTTTGGTCAAA
1 ATTAATTGTATATATTTTACCGAATTTATTAATATAAACAATTATATTAATTAATTTCGGTCAAA
* ** * *
73965640 ATATAAAAGACATAAAAATTAATATTGTTTTGGAAAGAATATAAACAATATACGAA-TTAATTCA
66 ATATAAAAGACATGAAAATTAATATTGTTTTGGAAAGAATATAATTAATATATGAATTTGATTCA
73965704 TACAAAAT
131 TACAAAAT
* *
73965712 ATTAGTTGTATCTATTTTACCGAATTTATTAATATAAACAATTATATTAATTAATTTCGGTCAAA
1 ATTAATTGTATATATTTTACCGAATTTATTAATATAAACAATTATATTAATTAATTTCGGTCAAA
* * * *
73965777 ATATAAAAGACATGGAAATTAATACT-CTTTGAAAAGAATATAATT
66 ATATAAAAGACATGAAAATTAATATTGTTTTGGAAAGAATATAATT
73965822 CGTTTTTCTA
Statistics
Matches: 344, Mismatches: 32, Indels: 11
0.89 0.08 0.03
Matches are distributed among these distances:
131 74 0.22
136 65 0.19
137 120 0.35
138 85 0.25
ACGTcount: A:0.45, C:0.06, G:0.09, T:0.40
Consensus pattern (138 bp):
ATTAATTGTATATATTTTACCGAATTTATTAATATAAACAATTATATTAATTAATTTCGGTCAAA
ATATAAAAGACATGAAAATTAATATTGTTTTGGAAAGAATATAATTAATATATGAATTTGATTCA
TACAAAAT
Found at i:73975363 original size:138 final size:137
Alignment explanation
Indices: 73975115--73975939 Score: 1013
Period size: 138 Copynumber: 6.1 Consensus size: 137
73975105 AGAAAAAAGG
*
73975115 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGA-TCGAAATTAATTA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTC-TTTATATTTTGACT-AAAATTAATTA
* *
73975179 ATATAAATGTTTATATTAATATATTCAGTAAAATATATACAATTAATATTTTGTATGAATCAAAT
64 ATATAAATGTTTATATTAATAAATTCAGTAAAATATATAAAATTAATATTTTGTATGAATCAAAT
73975244 TCATATATT
129 TCATATATT
* * * *
73975253 AATTATATTCTTTCCAAAAGAATATTAATTTCCTTATCTTATATATTTTGACTTAAATTAATTAG
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTT-TATATTTTGACTAAAATTAATTAA
* * *
73975318 TATAATTGTTCATATTAATAAATTCAGTAAAATATATAAAATTAATATTTTGTATGAACCAAATT
65 TATAAATGTTTATATTAATAAATTCAGTAAAATATATAAAATTAATATTTTGTATGAATCAAATT
73975383 CATATATT
130 CATATATT
* *
73975391 AATTATATTCTCTCCAAAAGAATATTAATTTTCATGTCATTTATATTTTGACTAAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTC-TTTATATTTTGACTAAAATTAATTAA
* * * * **
73975456 TATAACTATTTATATTAATAAATTCGGTAAAATCTTTATATTATTAATATTTTGTATGAATCAAA
65 TATAAATGTTTATATTAATAAATTCAGTAAAA--TATATAAAATTAATATTTTGTATGAATCAAA
73975521 TTCATATATT
128 TTCATATATT
* **
73975531 AATTATATTCTTT-C----------T-A---GCATGTCTTTTATATTTTGACCGAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTC-TTTATATTTTGACTAAAATTAATTAA
* * ** *
73975581 TATAACTGTTTATATTAATAAATTCGGTAAAATATTTATATTATTAATATTTTGTATGGATCAAA
65 TATAAATGTTTATATTAATAAATTCAGTAAAATA--TATAAAATTAATATTTTGTATGAATCAAA
73975646 TTCATATATT
128 TTCATATATT
* **
73975656 AATTATATTCTTTCTAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTC-TTTATATTTTGACTAAAATTAATTAA
* *
73975721 TATAACTGTTTATATTAACAAATTCAGTAAAATATA-AACAATTAATATTTTGTATGAATCAAAT
65 TATAAATGTTTATATTAATAAATTCAGTAAAATATATAA-AATTAATATTTTGTATGAATCAAAT
*
73975785 TCATCTATT
129 TCATATATT
* * * * *
73975794 AATTATA-TCATTTCCAAAAGAATATTAATTTCAAAGTATTTTATATTTTGGCTGAAATTAATTA
1 AATTATATTC-TTTCCAAAAGAATATTAATTTCCATGT-CTTTATATTTTGACTAAAATTAATTA
* *** *
73975858 ATATAACTGTTTATATTAATAAATT-ATGTAAAATATAGGCAATTAATATTTTGTATGAATGAAA
64 ATATAAATGTTTATATTAATAAATTCA-GTAAAATATATAAAATTAATATTTTGTATGAATCAAA
73975922 TTCATATATT
128 TTCATATATT
73975932 AATTATAT
1 AATTATAT
73975940 CTATGCTCTC
Statistics
Matches: 609, Mismatches: 50, Indels: 55
0.85 0.07 0.08
Matches are distributed among these distances:
123 1 0.00
125 112 0.18
128 1 0.00
129 1 0.00
136 1 0.00
137 7 0.01
138 368 0.60
139 4 0.01
140 114 0.19
ACGTcount: A:0.40, C:0.08, G:0.06, T:0.45
Consensus pattern (137 bp):
AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTATATTTTGACTAAAATTAATTAAT
ATAAATGTTTATATTAATAAATTCAGTAAAATATATAAAATTAATATTTTGTATGAATCAAATTC
ATATATT
Found at i:73975574 original size:125 final size:125
Alignment explanation
Indices: 73975423--73975671 Score: 444
Period size: 125 Copynumber: 2.0 Consensus size: 125
73975413 TATTAATTTT
*
73975423 CATGTCATTTATATTTTGACTAAAATTAATTAATATAACTATTTATATTAATAAATTCGGTAAAA
1 CATGTCATTTATATTTTGACCAAAATTAATTAATATAACTATTTATATTAATAAATTCGGTAAAA
*
73975488 TCTTTATATTATTAATATTTTGTATGAATCAAATTCATATATTAATTATATTCTTTCTAG
66 TATTTATATTATTAATATTTTGTATGAATCAAATTCATATATTAATTATATTCTTTCTAG
* * *
73975548 CATGTCTTTTATATTTTGACCGAAATTAATTAATATAACTGTTTATATTAATAAATTCGGTAAAA
1 CATGTCATTTATATTTTGACCAAAATTAATTAATATAACTATTTATATTAATAAATTCGGTAAAA
*
73975613 TATTTATATTATTAATATTTTGTATGGATCAAATTCATATATTAATTATATTCTTTCTA
66 TATTTATATTATTAATATTTTGTATGAATCAAATTCATATATTAATTATATTCTTTCTA
73975672 AAAGAATATT
Statistics
Matches: 118, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
125 118 1.00
ACGTcount: A:0.37, C:0.08, G:0.06, T:0.48
Consensus pattern (125 bp):
CATGTCATTTATATTTTGACCAAAATTAATTAATATAACTATTTATATTAATAAATTCGGTAAAA
TATTTATATTATTAATATTTTGTATGAATCAAATTCATATATTAATTATATTCTTTCTAG
Found at i:73975701 original size:265 final size:261
Alignment explanation
Indices: 73975289--73975939 Score: 766
Period size: 265 Copynumber: 2.4 Consensus size: 261
73975279 AATTTCCTTA
** * *
73975289 TCTTATATATTTTGACTTAAATTAATTAGTATAATTGTTCATATTAATAAATTCAGTAAAATATA
1 TCTTATATATTTTGACCGAAATTAATTAATATAACTGTTCATATTAATAAATTCAGTAAAATATA
73975354 TAAAATTAATATTTTGTATGAACCAAATTCATATATTAATTATATTCTCTCCAAAAGAATATTAA
66 TAAAATTAATATTTTGTATGAACCAAATTCATATATTAATTATATTCTCTCCAAAAGAATATTAA
* * * *
73975419 TTTTCATGTCATTTATATTTTGACTAAAATTAATTAATATAACTATTTATATTAATAAATTCGGT
131 TTTCCATGTCATTTATATTTTGACCAAAATTAATTAATATAACTATTTATATTAACAAATTCAGT
* * **
73975484 AAAATCTTTATATTATTAATATTTTGTATGAATCAAATTCATATATTAATTATATTCTTTCTAGC
196 AAAA--TATAAACAATTAATATTTTGTATGAATCAAATTCATATATTAATTATATTCTTTCTAGC
73975549 ATG
259 ATG
* * *
73975552 TCTTTTATATTTTGACCGAAATTAATTAATATAACTGTTTATATTAATAAATTCGGTAAAATATT
1 TCTTATATATTTTGACCGAAATTAATTAATATAACTGTTCATATTAATAAATTCAGTAAAATA--
** * * * *
73975617 TATATTATTAATATTTTGTATGGATCAAATTCATATATTAATTATATTCTTTCTAAAAGAATATT
64 TATAAAATTAATATTTTGTATGAACCAAATTCATATATTAATTATATTCTCTCCAAAAGAATATT
* * *
73975682 AATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAATATAACTGTTTATATTAACAAATTCA
129 AATTTCCATGTCATTTATATTTTGACCAAAATTAATTAATATAACTATTTATATTAACAAATTCA
*
73975747 GTAAAATATAAACAATTAATATTTTGTATGAATCAAATTCATCTATTAATTATA-TCATTTCCAA
194 GTAAAATATAAACAATTAATATTTTGTATGAATCAAATTCATATATTAATTATATTC-TTT-C--
* *
73975811 AAGAATATTAATTTCAAAG
255 --------T-A--GC-ATG
* * * * *
73975830 TATTTTATATTTTGGCTGAAATTAATTAATATAACTGTTTATATTAATAAATT-ATGTAAAATAT
1 TCTTATATATTTTGACCGAAATTAATTAATATAACTGTTCATATTAATAAATTCA-GTAAAATAT
*** **
73975894 AGGCAATTAATATTTTGTATGAATGAAATTCATATATTAATTATAT
65 ATAAAATTAATATTTTGTATGAACCAAATTCATATATTAATTATAT
73975940 CTATGCTCTC
Statistics
Matches: 332, Mismatches: 37, Indels: 25
0.84 0.09 0.06
Matches are distributed among these distances:
262 2 0.01
263 102 0.31
264 1 0.00
265 123 0.37
274 1 0.00
275 1 0.00
276 41 0.12
277 1 0.00
278 60 0.18
ACGTcount: A:0.40, C:0.08, G:0.07, T:0.45
Consensus pattern (261 bp):
TCTTATATATTTTGACCGAAATTAATTAATATAACTGTTCATATTAATAAATTCAGTAAAATATA
TAAAATTAATATTTTGTATGAACCAAATTCATATATTAATTATATTCTCTCCAAAAGAATATTAA
TTTCCATGTCATTTATATTTTGACCAAAATTAATTAATATAACTATTTATATTAACAAATTCAGT
AAAATATAAACAATTAATATTTTGTATGAATCAAATTCATATATTAATTATATTCTTTCTAGCAT
G
Found at i:73980197 original size:22 final size:20
Alignment explanation
Indices: 73980152--73980197 Score: 56
Period size: 22 Copynumber: 2.2 Consensus size: 20
73980142 ATACATGCAG
73980152 TAATATTTTTCTAATAATAA
1 TAATATTTTTCTAATAATAA
* *
73980172 TAATAATTTTATCTCATAATAC
1 TAAT-ATTTT-TCTAATAATAA
73980194 TAAT
1 TAAT
73980198 TAAAATTTCG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 4 0.18
21 5 0.23
22 13 0.59
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.48
Consensus pattern (20 bp):
TAATATTTTTCTAATAATAA
Found at i:73984760 original size:19 final size:18
Alignment explanation
Indices: 73984723--73984766 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
73984713 ATACATGCAG
73984723 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
73984740 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
73984759 TACTAATT
1 TAATAATT
73984767 AAAATTTCGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:73985372 original size:136 final size:138
Alignment explanation
Indices: 73985071--73985453 Score: 574
Period size: 137 Copynumber: 2.8 Consensus size: 138
73985061 AATATATGAA
73985071 TAATTGTATATATTTTACCGAATTTATTAATATAAAAAATTATATTAATTAATTTCAGTC-AAAT
1 TAATTGTATATATTTTACCGAATTTATTAATATAAAAAATTATATTAATTAATTTCAGTCAAAAT
* * * *
73985135 ATAAAAGACATGGAAATTAGTGTTCTTTTGGAAAGAATATAATTAATATATGAATTTGATTCATT
66 ATAAAAGACATGGAAATTAATATTTTTTTGGAAAGAATATAATTAATATATGAATTTGATTCATA
*
73985200 CACAATAT
131 CAAAATAT
* * * *
73985208 TAATTGTATATATTTTACCGAATTTATTAATATAAATAGTTATATTACTTAATTT-GGTCAAAAT
1 TAATTGTATATATTTTACCGAATTTATTAATATAAAAAATTATATTAATTAATTTCAGTCAAAAT
* * *
73985272 ATAAAAGATATGGAAATTAAT-TTTTTTTGGAAATAATATAATTAATATATGAATTTGATTTATA
66 ATAAAAGACATGGAAATTAATATTTTTTTGGAAAGAATATAATTAATATATGAATTTGATTCATA
73985336 CAAAATAT
131 CAAAATAT
** * *
73985344 TAATTGTATATATTTTACCGAAGGTATTAATATAAACAATTATATTAATTAATTTCAATCAAAAT
1 TAATTGTATATATTTTACCGAATTTATTAATATAAAAAATTATATTAATTAATTTCAGTCAAAAT
* *
73985409 ATAAAAGACATAGAAATTAATATTCTTTTTGAAAAGAATATAATT
66 ATAAAAGACATGGAAATTAATATT-TTTTTGGAAAGAATATAATT
73985454 CATTTTTCTA
Statistics
Matches: 220, Mismatches: 22, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
136 99 0.45
137 101 0.46
138 2 0.01
139 18 0.08
ACGTcount: A:0.44, C:0.05, G:0.09, T:0.42
Consensus pattern (138 bp):
TAATTGTATATATTTTACCGAATTTATTAATATAAAAAATTATATTAATTAATTTCAGTCAAAAT
ATAAAAGACATGGAAATTAATATTTTTTTGGAAAGAATATAATTAATATATGAATTTGATTCATA
CAAAATAT
Found at i:73987020 original size:8 final size:8
Alignment explanation
Indices: 73987009--73987037 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
73986999 GGTGGTTAAA
73987009 TGGAGTGT
1 TGGAGTGT
73987017 TGGAGTGT
1 TGGAGTGT
73987025 TGGAGTGT
1 TGGAGTGT
73987033 TGGAG
1 TGGAG
73987038 GTCTTGTGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.14, C:0.00, G:0.52, T:0.34
Consensus pattern (8 bp):
TGGAGTGT
Found at i:73991642 original size:43 final size:42
Alignment explanation
Indices: 73991497--73991652 Score: 154
Period size: 43 Copynumber: 3.7 Consensus size: 42
73991487 AACATATACA
* *
73991497 ATGCCAACGTCCCAGACGTGGTCTTACATGT-AATCAAACATCG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAAATCAAA-AT-G
* * * * * *
73991540 ATGCCACTGTCCCAGATAAGGTCTTACACG-AAATCAGATACG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAAATCA-AAATG
* *
73991582 ATGCCGATGTCCCAGACATGGTCTTACATGTAAAGCAAAAGTG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAAATCAAAA-TG
* *
73991625 ATGCCAATGTCCTAGACATGGTTTTACA
1 ATGCCAATGTCCCAGACATGGTCTTACA
73991653 CGAATTCACA
Statistics
Matches: 90, Mismatches: 19, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
42 28 0.31
43 61 0.68
44 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.24
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGTAAATCAAAATG
Found at i:73991685 original size:85 final size:84
Alignment explanation
Indices: 73991507--73991664 Score: 194
Period size: 85 Copynumber: 1.9 Consensus size: 84
73991497 ATGCCAACGT
* * * *
73991507 CCCAGACGTGGTCTTACATGTAATCAAACATCGATGCCACTGTCCCAGATAAGGTCTTACACGAA
1 CCCAGACATGGTCTTACATGTAAGCAAACATCGATGCCAATGTCCCAGACAAGGTCTTACACGAA
*
73991572 ATCAGATACGATGCCGATG
66 ATCACATACGATGCCGATG
* * *
73991591 TCCCAGACATGGTCTTACATGTAAAGCAAA-AGT-GATGCCAATGTCCTAGACATGGTTTTACAC
1 -CCCAGACATGGTCTTACATGT-AAGCAAACA-TCGATGCCAATGTCCCAGACAAGGTCTTACAC
*
73991654 GAATTCACATA
63 GAAATCACATA
73991665 TCAGATCCTA
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
85 55 0.89
86 7 0.11
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.25
Consensus pattern (84 bp):
CCCAGACATGGTCTTACATGTAAGCAAACATCGATGCCAATGTCCCAGACAAGGTCTTACACGAA
ATCACATACGATGCCGATG
Found at i:73994370 original size:48 final size:48
Alignment explanation
Indices: 73994310--73994435 Score: 164
Period size: 48 Copynumber: 2.6 Consensus size: 48
73994300 ATGAGATCTC
* *
73994310 GTGTAAGACCATGTCTGGGACATGGCATC-AGCATTGATATGACAGCCA
1 GTGTAAGACCATGTTTGGGACATGGCATCGA-CATTGATATGACACCCA
***
73994358 GTGTAAGACCATGTTTGGGACATGGCATCGACATTGATATGTGTCCCA
1 GTGTAAGACCATGTTTGGGACATGGCATCGACATTGATATGACACCCA
* * *
73994406 GTGTAAGACTATATTTGGGATATGGCATCG
1 GTGTAAGACCATGTTTGGGACATGGCATCG
73994436 GCCTTGGTAT
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
48 68 0.99
49 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (48 bp):
GTGTAAGACCATGTTTGGGACATGGCATCGACATTGATATGACACCCA
Found at i:73994447 original size:48 final size:49
Alignment explanation
Indices: 73994310--73994479 Score: 159
Period size: 48 Copynumber: 3.5 Consensus size: 49
73994300 ATGAGATCTC
* * * ** *
73994310 GTGTAAGACCATGTCTGGGACATGGCATC-AGCATTGATATGACA-GCCA
1 GTGTAAGACCATATTTGGGATATGGCATCGA-CATTGATATGTGATCCCA
* *
73994358 GTGTAAGACCATGTTTGGGACATGGCATCGACATTGATATGTG-TCCCA
1 GTGTAAGACCATATTTGGGATATGGCATCGACATTGATATGTGATCCCA
* * * * **
73994406 GTGTAAGACTATATTTGGGATATGGCATCGGCCTTGGTATGTGATTTCA
1 GTGTAAGACCATATTTGGGATATGGCATCGACATTGATATGTGATCCCA
* *
73994455 -TGTTAGACCATATCTGGGATATGGC
1 GTGTAAGACCATATTTGGGATATGGC
73994480 GTTGATATGA
Statistics
Matches: 104, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
48 100 0.96
49 4 0.04
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (49 bp):
GTGTAAGACCATATTTGGGATATGGCATCGACATTGATATGTGATCCCA
Found at i:73995951 original size:22 final size:22
Alignment explanation
Indices: 73995926--73995975 Score: 100
Period size: 22 Copynumber: 2.3 Consensus size: 22
73995916 GTGTGAAGGG
73995926 CACACGGGCGTGTCCTTGTGTC
1 CACACGGGCGTGTCCTTGTGTC
73995948 CACACGGGCGTGTCCTTGTGTC
1 CACACGGGCGTGTCCTTGTGTC
73995970 CACACG
1 CACACG
73995976 AGCATGTGAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.12, C:0.34, G:0.30, T:0.24
Consensus pattern (22 bp):
CACACGGGCGTGTCCTTGTGTC
Found at i:73998974 original size:68 final size:63
Alignment explanation
Indices: 73998864--73999116 Score: 208
Period size: 68 Copynumber: 3.9 Consensus size: 63
73998854 ATACAGATGG
** * * *
73998864 TATGTAGCTAGGTCACATGTATGGTGCTGAGTGCACATCATGT-GTACAAGAGAGCTACGAGACA
1 TATGTAGCTAGGTCACATGGGTGGTACT-AGTGTACACCATGTAG-ACAAGAGAGCTACGAG--A
73998928 TTA
62 -TA
* *
73998931 TGATGTAGCTAGGTCACATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATA
1 T-ATGTAGCTAGGTCACATGGGTGGTACTA-GTGTACACCATGTAGACAAGAGAGCTACGAGATA
* * * * * *
73998996 TATATAGCTAGGTCGCATGCGTGGTTCCAGGTGAAAGACACCATGTAGACAAGAGAGCTACGAGA
1 TATGTAGCTAGGTCACATGGGTGGTACTA-GTG---TACACCATGTAGACAAGAGAGCTACGAGA
73999061 TA
62 TA
* * *
73999063 AACTG--GCTAGGTCAGATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 TA-TGTAGCTAGGTCACATGGGTGGTACT-AGTGTACACCATGTAG-ACAAGAGAGC
73999117 CAAAATTATG
Statistics
Matches: 152, Mismatches: 25, Indels: 22
0.76 0.13 0.11
Matches are distributed among these distances:
62 1 0.01
63 18 0.12
64 25 0.16
65 3 0.02
66 21 0.14
67 33 0.22
68 50 0.33
69 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.24
Consensus pattern (63 bp):
TATGTAGCTAGGTCACATGGGTGGTACTAGTGTACACCATGTAGACAAGAGAGCTACGAGATA
Found at i:73999511 original size:24 final size:24
Alignment explanation
Indices: 73999484--73999529 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
73999474 GTATAAATTG
*
73999484 AATTAGAGACTGAATGAG-ATATCA
1 AATTAGAG-CTCAATGAGTATATCA
73999508 AATTAGAGCTCAATGAGTATAT
1 AATTAGAGCTCAATGAGTATAT
73999530 TTTCATATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 8 0.40
24 12 0.60
ACGTcount: A:0.43, C:0.09, G:0.20, T:0.28
Consensus pattern (24 bp):
AATTAGAGCTCAATGAGTATATCA
Found at i:74007666 original size:48 final size:48
Alignment explanation
Indices: 74007565--74007692 Score: 123
Period size: 48 Copynumber: 2.7 Consensus size: 48
74007555 ATGAGATTCG
* * * **
74007565 GTGTAAGACCATGTCTGGGACATGTCATCGGTGTTGATATGAGAGCCA
1 GTGTAAGAACATGTCTGGGACATGGCATCAGCATTGATATGAGAGCCA
* * *
74007613 ATGTAAGAACATGTTTGGGACATGGCATCAGCATTGATAT-ATGTGCCA
1 GTGTAAGAACATGTCTGGGACATGGCATCAGCATTGATATGA-GAGCCA
* * ** *
74007661 GTGTAAGACCATATCTAAGATATGGCATCAGC
1 GTGTAAGAACATGTCTGGGACATGGCATCAGC
74007693 CTCAGTATGT
Statistics
Matches: 64, Mismatches: 15, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
47 1 0.02
48 63 0.98
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.27
Consensus pattern (48 bp):
GTGTAAGAACATGTCTGGGACATGGCATCAGCATTGATATGAGAGCCA
Found at i:74007784 original size:42 final size:42
Alignment explanation
Indices: 74007698--74007822 Score: 117
Period size: 42 Copynumber: 3.0 Consensus size: 42
74007688 TCAGCCTCAG
* * * * * ** *
74007698 TATGTGATTTCATGTTAGACCATATCTGGGATATGGTGTTGA
1 TATGAGATTTCGTGTAAGACCATGTCTGGGACATGGCATCGA
74007740 TATGAGATTTCGTGTAAGACCATGTCTGGGACATGGCATCGA
1 TATGAGATTTCGTGTAAGACCATGTCTGGGACATGGCATCGA
* * * * *
74007782 TATAAG-GTCCTGTATAAGACCATGTCTAGGACATGGCATCG
1 TATGAGATTTC-GTGTAAGACCATGTCTGGGACATGGCATCG
74007823 GCACCCACAT
Statistics
Matches: 69, Mismatches: 13, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
41 2 0.03
42 67 0.97
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (42 bp):
TATGAGATTTCGTGTAAGACCATGTCTGGGACATGGCATCGA
Found at i:74019908 original size:19 final size:18
Alignment explanation
Indices: 74019865--74019915 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 18
74019855 TGACAGATTC
*
74019865 TATTATTTGA-TTTCTTGT
1 TATTATTT-ATTTTCTTAT
74019883 TATTTATTTATTTCTCTTAT
1 TA-TTATTTATTT-TCTTAT
74019903 TATTATTTATTTT
1 TATTATTTATTTT
74019916 AAAAATTCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
18 4 0.14
19 18 0.62
20 7 0.24
ACGTcount: A:0.20, C:0.06, G:0.04, T:0.71
Consensus pattern (18 bp):
TATTATTTATTTTCTTAT
Found at i:74024810 original size:84 final size:83
Alignment explanation
Indices: 74024676--74024843 Score: 327
Period size: 84 Copynumber: 2.0 Consensus size: 83
74024666 ACCTCTATAC
74024676 AATACCTGAGCTAAAAAAAATCATTTGTGCTTACCCTTTTATTTGGTCCTGTATTGCATGATTAT
1 AATACCTGAGCTAAAAAAAATCATTTGTGCTTACCCTTTTATTTGGTCCTGTATTGCATGATTAT
74024741 ATACGTTTGACCATACAT
66 ATACGTTTGACCATACAT
74024759 AATACCTGAGCTAAAAAACAATCATTTGTGCTTACCCTTTTATTTGGTCCTGTATTGCATGATTA
1 AATACCTGAGCTAAAAAA-AATCATTTGTGCTTACCCTTTTATTTGGTCCTGTATTGCATGATTA
74024824 TATACGTTTGACCATACAT
65 TATACGTTTGACCATACAT
74024843 A
1 A
74024844 TTGAGGGTTA
Statistics
Matches: 84, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
83 18 0.21
84 66 0.79
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.38
Consensus pattern (83 bp):
AATACCTGAGCTAAAAAAAATCATTTGTGCTTACCCTTTTATTTGGTCCTGTATTGCATGATTAT
ATACGTTTGACCATACAT
Found at i:74025984 original size:11 final size:11
Alignment explanation
Indices: 74025968--74025995 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
74025958 GGGCCATAAA
74025968 ATTTCATTCAT
1 ATTTCATTCAT
74025979 ATTTCATTCAT
1 ATTTCATTCAT
74025990 ATTTCA
1 ATTTCA
74025996 AAACGTTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.29, C:0.18, G:0.00, T:0.54
Consensus pattern (11 bp):
ATTTCATTCAT
Found at i:74031108 original size:30 final size:30
Alignment explanation
Indices: 74031074--74031134 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
74031064 TCCTTAACTC
74031074 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
74031104 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
74031134 A
1 A
74031135 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:74041866 original size:20 final size:19
Alignment explanation
Indices: 74041843--74041933 Score: 58
Period size: 20 Copynumber: 4.6 Consensus size: 19
74041833 AACTGTAATA
74041843 CATTCATATAACCAGTAGTT
1 CATTCATATAA-CAGTAGTT
** *
74041863 CATTTGTATAAATAGTAGTT
1 CATTCATAT-AACAGTAGTT
**
74041883 CA-TCAGTAATAACAGTAACT
1 CATTCA-T-ATAACAGTAGTT
* *
74041903 CATTCGTATCAACAGTATTT
1 CATTCATAT-AACAGTAGTT
*
74041923 CATCCATATAA
1 CATTCATATAA
74041934 ACACATATTC
Statistics
Matches: 53, Mismatches: 13, Indels: 11
0.69 0.17 0.14
Matches are distributed among these distances:
19 5 0.09
20 42 0.79
21 6 0.11
ACGTcount: A:0.37, C:0.18, G:0.10, T:0.35
Consensus pattern (19 bp):
CATTCATATAACAGTAGTT
Found at i:74041899 original size:40 final size:41
Alignment explanation
Indices: 74041850--74041926 Score: 93
Period size: 40 Copynumber: 1.9 Consensus size: 41
74041840 ATACATTCAT
** * *
74041850 ATAACCAGTAGTTCATTTGTATAAATAGTAGTTCATCAGTA
1 ATAACCAGTAACTCATTCGTATAAACAGTAGTTCATCAGTA
* *
74041891 ATAA-CAGTAACTCATTCGTATCAACAGTATTTCATC
1 ATAACCAGTAACTCATTCGTATAAACAGTAGTTCATC
74041927 CATATAAACA
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
40 26 0.87
41 4 0.13
ACGTcount: A:0.36, C:0.17, G:0.12, T:0.35
Consensus pattern (41 bp):
ATAACCAGTAACTCATTCGTATAAACAGTAGTTCATCAGTA
Found at i:74042133 original size:23 final size:23
Alignment explanation
Indices: 74042103--74042178 Score: 86
Period size: 23 Copynumber: 3.3 Consensus size: 23
74042093 CTAATGAACA
*
74042103 GTAAGCTCTATTGAGCTGAAATG
1 GTAAGCTCTATCGAGCTGAAATG
74042126 GTAAGCTCTATCGAGCTGAACA--
1 GTAAGCTCTATCGAGCTGAA-ATG
* *
74042148 GTAAACTC-ATACGAGCTAAAATG
1 GTAAGCTCTAT-CGAGCTGAAATG
74042171 GTAAGCTC
1 GTAAGCTC
74042179 CAATGAGTTG
Statistics
Matches: 45, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
21 3 0.07
22 15 0.33
23 26 0.58
24 1 0.02
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.25
Consensus pattern (23 bp):
GTAAGCTCTATCGAGCTGAAATG
Found at i:74046067 original size:59 final size:59
Alignment explanation
Indices: 74045996--74046114 Score: 220
Period size: 59 Copynumber: 2.0 Consensus size: 59
74045986 TTTCTGTCCA
*
74045996 AGCCCTAGTGACTGTATTTTGCTTTTCTCAAAGATCATACAATAACTATCTCATCATCT
1 AGCCCTAGTGACTATATTTTGCTTTTCTCAAAGATCATACAATAACTATCTCATCATCT
*
74046055 AGCCCTAGTGACTATATTTTTCTTTTCTCAAAGATCATACAATAACTATCTCATCATCT
1 AGCCCTAGTGACTATATTTTGCTTTTCTCAAAGATCATACAATAACTATCTCATCATCT
74046114 A
1 A
74046115 TGTTATCAAA
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
59 58 1.00
ACGTcount: A:0.30, C:0.24, G:0.08, T:0.38
Consensus pattern (59 bp):
AGCCCTAGTGACTATATTTTGCTTTTCTCAAAGATCATACAATAACTATCTCATCATCT
Found at i:74051699 original size:46 final size:44
Alignment explanation
Indices: 74051606--74051699 Score: 136
Period size: 44 Copynumber: 2.1 Consensus size: 44
74051596 ATTACAACAT
74051606 CATTCCATTCAACCAAACACAAGAATAACATTACAGTTCTATTC
1 CATTCCATTCAACCAAACACAAGAATAACATTACAGTTCTATTC
* *
74051650 CATTCCATTCAACCAAACA-ATTGAATTACTGATTACAGTTCTATTC
1 CATTCCATTCAACCAAACACA-AGAATAAC--ATTACAGTTCTATTC
74051696 CATT
1 CATT
74051700 ACAGCTCTAT
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
43 1 0.02
44 25 0.56
46 19 0.42
ACGTcount: A:0.37, C:0.26, G:0.05, T:0.32
Consensus pattern (44 bp):
CATTCCATTCAACCAAACACAAGAATAACATTACAGTTCTATTC
Found at i:74051702 original size:16 final size:16
Alignment explanation
Indices: 74051681--74051752 Score: 99
Period size: 16 Copynumber: 4.5 Consensus size: 16
74051671 TGAATTACTG
*
74051681 ATTACAGTTCTATTCC
1 ATTACAGCTCTATTCC
74051697 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
* *
74051713 ATTACAACTCTATTCT
1 ATTACAGCTCTATTCC
*
74051729 ATTACAGCTTTATTCC
1 ATTACAGCTCTATTCC
*
74051745 ATTTCAGC
1 ATTACAGC
74051753 GAACCAAACG
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 49 1.00
ACGTcount: A:0.26, C:0.26, G:0.06, T:0.42
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:74056556 original size:26 final size:26
Alignment explanation
Indices: 74056495--74056560 Score: 80
Period size: 26 Copynumber: 2.6 Consensus size: 26
74056485 CCGCAGTAAA
**
74056495 GCTGCCAGTAACAGGAACACAACAAG
1 GCTGCCAGTAACAATAACACAACAAG
* * *
74056521 GCTACTAGTAACAATAACACATCAAG
1 GCTGCCAGTAACAATAACACAACAAG
74056547 GCTGCCAGT-ACAAT
1 GCTGCCAGTAACAAT
74056561 TTATGACACA
Statistics
Matches: 33, Mismatches: 7, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
25 5 0.15
26 28 0.85
ACGTcount: A:0.41, C:0.26, G:0.18, T:0.15
Consensus pattern (26 bp):
GCTGCCAGTAACAATAACACAACAAG
Found at i:74056609 original size:20 final size:20
Alignment explanation
Indices: 74056580--74056716 Score: 175
Period size: 20 Copynumber: 6.8 Consensus size: 20
74056570 AAAGCCAAGG
* * *
74056580 GTAGCTGCACGAAGTCATCA
1 GTAGCGGCACAAAGCCATCA
* *
74056600 GTAGCAGCACGAAGCCATCA
1 GTAGCGGCACAAAGCCATCA
* ** **
74056620 ATAGTAGCATGAAGCCATCA
1 GTAGCGGCACAAAGCCATCA
74056640 GTAGCGGCACAAAGCCATCA
1 GTAGCGGCACAAAGCCATCA
*
74056660 GTAGTGGCACAAAGCCATCA
1 GTAGCGGCACAAAGCCATCA
74056680 GTAGCGGCACAAAGCCATCA
1 GTAGCGGCACAAAGCCATCA
74056700 GTAGCGGCACAAAGCCA
1 GTAGCGGCACAAAGCCA
74056717 CCTGTAACAT
Statistics
Matches: 105, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 105 1.00
ACGTcount: A:0.35, C:0.27, G:0.25, T:0.13
Consensus pattern (20 bp):
GTAGCGGCACAAAGCCATCA
Found at i:74069402 original size:12 final size:13
Alignment explanation
Indices: 74069366--74069403 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
74069356 AAATATTTGG
74069366 CTTGTTCTTAATT
1 CTTGTTCTTAATT
*
74069379 ATGTGTTCTTAATT
1 CT-TGTTCTTAATT
74069393 CTTG-TCTTAAT
1 CTTGTTCTTAAT
74069404 ATTCCAGGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 7 0.32
13 3 0.14
14 12 0.55
ACGTcount: A:0.18, C:0.13, G:0.11, T:0.58
Consensus pattern (13 bp):
CTTGTTCTTAATT
Found at i:74076248 original size:7 final size:7
Alignment explanation
Indices: 74076236--74076270 Score: 70
Period size: 7 Copynumber: 5.0 Consensus size: 7
74076226 GACTTGTTCT
74076236 TAAAAAA
1 TAAAAAA
74076243 TAAAAAA
1 TAAAAAA
74076250 TAAAAAA
1 TAAAAAA
74076257 TAAAAAA
1 TAAAAAA
74076264 TAAAAAA
1 TAAAAAA
74076271 ACATGTATAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (7 bp):
TAAAAAA
Found at i:74077620 original size:12 final size:13
Alignment explanation
Indices: 74077584--74077621 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
74077574 AAATATTTGG
74077584 CTTGTTCTTAATT
1 CTTGTTCTTAATT
*
74077597 ATGTGTTCTTAATT
1 CT-TGTTCTTAATT
74077611 CTTG-TCTTAAT
1 CTTGTTCTTAAT
74077622 ATTCCAAGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 7 0.32
13 3 0.14
14 12 0.55
ACGTcount: A:0.18, C:0.13, G:0.11, T:0.58
Consensus pattern (13 bp):
CTTGTTCTTAATT
Found at i:74084020 original size:25 final size:25
Alignment explanation
Indices: 74083992--74084061 Score: 97
Period size: 25 Copynumber: 2.8 Consensus size: 25
74083982 CTCTTTTAAT
74083992 AACTGGGGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAAAGCCCTTTTC-GATA
*
74084017 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
* *
74084042 AATTGGGGCAGAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
74084062 AGCACTTCCT
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
25 37 0.90
26 4 0.10
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:74084937 original size:27 final size:27
Alignment explanation
Indices: 74084872--74084937 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 27
74084862 GGGCATATTC
*
74084872 GTCATTTTACCATACAAGGGTATTACG
1 GTCATTTTACCTTACAAGGGTATTACG
* *
74084899 GTCACTTTACCTTACAGGGGCT-TTACG
1 GTCATTTTACCTTACAAGGG-TATTACG
*
74084926 GTCTTTTTACCT
1 GTCATTTTACCT
74084938 ATTAGGGGTA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
27 32 0.97
28 1 0.03
ACGTcount: A:0.21, C:0.23, G:0.18, T:0.38
Consensus pattern (27 bp):
GTCATTTTACCTTACAAGGGTATTACG
Found at i:74085019 original size:27 final size:27
Alignment explanation
Indices: 74084989--74085074 Score: 77
Period size: 27 Copynumber: 3.1 Consensus size: 27
74084979 GTAAATCTAC
74084989 AAACCAAAGGTATTTCAGTAATTTTGT
1 AAACCAAAGGTATTTCAGTAATTTTGT
* *
74085016 AAACTAATGGTATTTCTA-TAATTTT-T
1 AAACCAAAGGTATTTC-AGTAATTTTGT
* * *
74085042 AGAAAGTCAAGGGTATTTCTGTAATTTTGT
1 --AAA-CCAAAGGTATTTCAGTAATTTTGT
74085072 AAA
1 AAA
74085075 TCAGGGGTAT
Statistics
Matches: 47, Mismatches: 6, Indels: 11
0.73 0.09 0.17
Matches are distributed among these distances:
26 1 0.02
27 21 0.45
28 7 0.15
29 17 0.36
30 1 0.02
ACGTcount: A:0.36, C:0.08, G:0.15, T:0.41
Consensus pattern (27 bp):
AAACCAAAGGTATTTCAGTAATTTTGT
Found at i:74085091 original size:27 final size:27
Alignment explanation
Indices: 74085038--74085235 Score: 170
Period size: 27 Copynumber: 7.3 Consensus size: 27
74085028 TTTCTATAAT
* *
74085038 TTTTAGAAAGTCAAGGGTATTTCT-GTAA
1 TTTTACAAA-TCAGGGGTATTT-TGGTAA
** *
74085066 TTTTGTAAATCAGGGGTATTTTTGTAA
1 TTTTACAAATCAGGGGTATTTTGGTAA
*
74085093 TTTTACAAAT-TGAGGGTATTTTGGTAA
1 TTTTACAAATCAG-GGGTATTTTGGTAA
* * *
74085120 TTTCACAAACCAGTGGTATTTTGGTAA
1 TTTTACAAATCAGGGGTATTTTGGTAA
*
74085147 TTTTACAAA-CTAAGGGTATTTTGGTAA
1 TTTTACAAATC-AGGGGTATTTTGGTAA
* *
74085174 TTTTAAAAATTAGGGGTATTTTGGTAA
1 TTTTACAAATCAGGGGTATTTTGGTAA
* * **
74085201 TTCTATCATAT-AGGGGTATTTCAGTAA
1 TTTTA-CAAATCAGGGGTATTTTGGTAA
*
74085228 TTTCACAA
1 TTTTACAA
74085236 TTGAGGGTAA
Statistics
Matches: 139, Mismatches: 25, Indels: 14
0.78 0.14 0.08
Matches are distributed among these distances:
26 5 0.04
27 123 0.88
28 11 0.08
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.42
Consensus pattern (27 bp):
TTTTACAAATCAGGGGTATTTTGGTAA
Found at i:74085219 original size:81 final size:81
Alignment explanation
Indices: 74085079--74085235 Score: 194
Period size: 81 Copynumber: 1.9 Consensus size: 81
74085069 TGTAAATCAG
* * * **
74085079 GGGTATTTTTGTAATTTTACAAATTGAGGGTATTTTGGTAATTTCACAAACCAGTGGTATTTTGG
1 GGGTATTTTGGTAATTTTAAAAATTGAGGGTATTTTGGTAATTTCACAAACCAGGGGTATTTCAG
*
74085144 TAATTTTACAAACTAA
66 TAATTTCACAAACTAA
* *
74085160 GGGTATTTTGGTAATTTTAAAAATT-AGGGGTATTTTGGTAA-TTCTATCATA-TAGGGGTATTT
1 GGGTATTTTGGTAATTTTAAAAATTGA-GGGTATTTTGGTAATTTC-A-CAAACCAGGGGTATTT
74085222 CAGTAATTTCACAA
63 CAGTAATTTCACAA
74085236 TTGAGGGTAA
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
80 4 0.06
81 58 0.89
82 3 0.05
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.42
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTAAAAATTGAGGGTATTTTGGTAATTTCACAAACCAGGGGTATTTCAG
TAATTTCACAAACTAA
Found at i:74085267 original size:27 final size:27
Alignment explanation
Indices: 74085238--74085431 Score: 237
Period size: 27 Copynumber: 7.2 Consensus size: 27
74085228 TTTCACAATT
*
74085238 GAGGGTAAAACGGTAATTTTGTAAA-C
1 GAGGGTAAAACGGTAATTCTGTAAATC
* *
74085264 TGAGGGTAAAATGGTAATTTTGTAAATC
1 -GAGGGTAAAACGGTAATTCTGTAAATC
*
74085292 GAGGGTAAAACAGTAATTCTGTAAATC
1 GAGGGTAAAACGGTAATTCTGTAAATC
* * *
74085319 AAGGGTAAAATGGTAATTCTATAAATC
1 GAGGGTAAAACGGTAATTCTGTAAATC
* *
74085346 AAGGGTAAAACGGTAATTTTGTAAATC
1 GAGGGTAAAACGGTAATTCTGTAAATC
* *
74085373 GAGGGTGAAACGGTAATTCTATAAATC
1 GAGGGTAAAACGGTAATTCTGTAAATC
* * **
74085400 GAGGGTAAAATGATAATTCTACAAATC
1 GAGGGTAAAACGGTAATTCTGTAAATC
74085427 GAGGG
1 GAGGG
74085432 CATTTCAGTA
Statistics
Matches: 147, Mismatches: 19, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
27 146 0.99
28 1 0.01
ACGTcount: A:0.40, C:0.08, G:0.24, T:0.28
Consensus pattern (27 bp):
GAGGGTAAAACGGTAATTCTGTAAATC
Found at i:74085351 original size:81 final size:81
Alignment explanation
Indices: 74085239--74085431 Score: 271
Period size: 81 Copynumber: 2.4 Consensus size: 81
74085229 TTCACAATTG
* * * *
74085239 AGGGTAAAACGGTAATTTTGTAAA-CTGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAAC
1 AGGGTAAAATGGTAATTCTATAAATC-GAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAAC
*
74085303 AGTAATTCTGTAAATCA
65 AGTAATTCTATAAATCA
* * *
74085320 AGGGTAAAATGGTAATTCTATAAATCAAGGGTAAAACGGTAATTTTGTAAATCGAGGGTGAAACG
1 AGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACA
*
74085385 GTAATTCTATAAATCG
66 GTAATTCTATAAATCA
* *
74085401 AGGGTAAAATGATAATTCTACAAATCGAGGG
1 AGGGTAAAATGGTAATTCTATAAATCGAGGG
74085432 CATTTCAGTA
Statistics
Matches: 99, Mismatches: 12, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
81 98 0.99
82 1 0.01
ACGTcount: A:0.40, C:0.08, G:0.24, T:0.28
Consensus pattern (81 bp):
AGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACA
GTAATTCTATAAATCA
Found at i:74085443 original size:81 final size:81
Alignment explanation
Indices: 74085277--74085451 Score: 233
Period size: 81 Copynumber: 2.2 Consensus size: 81
74085267 GGGTAAAATG
* * *
74085277 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAATGGTAATTCTATA
1 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAATGATAATTCTACA
* *
74085342 AATCAAGGGTAAAACG
66 AATCAAGGGCAAAACA
* * *
74085358 GTAATTTTGTAAATCGAGGGTGAAACGGTAATTCTATAAATCGAGGGTAAAATGATAATTCTACA
1 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAATGATAATTCTACA
* ***
74085423 AATCGAGGGCATTTCA
66 AATCAAGGGCAAAACA
*
74085439 GTAATTTGGTAAA
1 GTAATTTTGTAAA
74085452 CTAAAGTATT
Statistics
Matches: 81, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
81 81 1.00
ACGTcount: A:0.39, C:0.09, G:0.22, T:0.30
Consensus pattern (81 bp):
GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAATGATAATTCTACA
AATCAAGGGCAAAACA
Found at i:74086841 original size:22 final size:20
Alignment explanation
Indices: 74086816--74086864 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 20
74086806 GTTATGTAAG
74086816 TTTGATGATTTTGGCATATAGA
1 TTTGATG-TTTTGGC-TATAGA
*
74086838 TTTGGTATGTTTTGGCTATGGA
1 TTT-G-ATGTTTTGGCTATAGA
74086860 TTTGA
1 TTTGA
74086865 GTAGTTAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
20 1 0.04
21 1 0.04
22 11 0.46
23 8 0.33
24 3 0.12
ACGTcount: A:0.20, C:0.04, G:0.27, T:0.49
Consensus pattern (20 bp):
TTTGATGTTTTGGCTATAGA
Found at i:74093228 original size:23 final size:24
Alignment explanation
Indices: 74093198--74093242 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
74093188 TGATTGTTAC
74093198 CTCTTACCGT-CTTATTTCTCCTT
1 CTCTTACCGTCCTTATTTCTCCTT
*
74093221 CTCTTACCTTCCTTATTTCTCC
1 CTCTTACCGTCCTTATTTCTCC
74093243 AACAATACGG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 9 0.45
24 11 0.55
ACGTcount: A:0.09, C:0.38, G:0.02, T:0.51
Consensus pattern (24 bp):
CTCTTACCGTCCTTATTTCTCCTT
Found at i:74102822 original size:30 final size:30
Alignment explanation
Indices: 74102781--74102842 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 30
74102771 TTTTCGGAGC
* *
74102781 TAGGGGTAAAATGGTCACTTTGCAAAAATA
1 TAGGGGAAAAATGGCCACTTTGCAAAAATA
* * *
74102811 TAGGGGAAAAATGGCCATTTTGCTAAATTA
1 TAGGGGAAAAATGGCCACTTTGCAAAAATA
74102841 TA
1 TA
74102843 AATTGTTGAG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.39, C:0.10, G:0.23, T:0.29
Consensus pattern (30 bp):
TAGGGGAAAAATGGCCACTTTGCAAAAATA
Found at i:74103325 original size:46 final size:45
Alignment explanation
Indices: 74103168--74103338 Score: 175
Period size: 46 Copynumber: 3.7 Consensus size: 45
74103158 TCATTTGTGT
* * *
74103168 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTC-TGAAGAGA
* * *
74103214 GCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCAT-TGAGACAAGA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCTGA-A-GAGA
* * *
74103262 GTTAGTGTGAGACATGTCTGGGACATACATCGGCCTCGTGAAGTA-A
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTC-TGAAG-AGA
*
74103308 GCCAGTGTAAGACATGTCTGGGACATGCATC
1 GCTAGTGTAAGACATGTCTGGGACATGCATC
74103339 AGCTGCGAGA
Statistics
Matches: 102, Mismatches: 16, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
46 49 0.48
47 30 0.29
48 23 0.23
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (45 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCTGAAGAGA
Found at i:74108089 original size:18 final size:19
Alignment explanation
Indices: 74108047--74108095 Score: 57
Period size: 18 Copynumber: 2.7 Consensus size: 19
74108037 TTATTTTCTC
*
74108047 AAAAATTTAA-AAATTATT
1 AAAAATTTAATAAATTATA
*
74108065 AATAATTTAATAAATTA-A
1 AAAAATTTAATAAATTATA
*
74108083 AAAAATTGAATAA
1 AAAAATTTAATAA
74108096 TAAAATTTGA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
18 20 0.77
19 6 0.23
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (19 bp):
AAAAATTTAATAAATTATA
Found at i:74108980 original size:29 final size:30
Alignment explanation
Indices: 74108924--74108980 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
74108914 TTTTGGAAAA
* * **
74108924 ATTTACAAAAAGAGGCATCTAGTTTTTATT
1 ATTTACAAAAAGAGGCAACCAAATTTTATT
74108954 ATTTACAAAAAGA-GCAACCAAATTTTA
1 ATTTACAAAAAGAGGCAACCAAATTTTA
74108981 AAAATACTTC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
29 10 0.43
30 13 0.57
ACGTcount: A:0.44, C:0.12, G:0.11, T:0.33
Consensus pattern (30 bp):
ATTTACAAAAAGAGGCAACCAAATTTTATT
Found at i:74123103 original size:46 final size:46
Alignment explanation
Indices: 74123051--74123319 Score: 239
Period size: 46 Copynumber: 5.8 Consensus size: 46
74123041 TATTTGGGCA
74123051 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
** * *
74123097 TCCGAACTCGTTGAGTTGAGTCTAAGTTC-CTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
74123142 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
74123190 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * **
74123235 CATCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACA
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
74123283 CCCGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
74123320 GCGGGTTACA
Statistics
Matches: 179, Mismatches: 26, Indels: 36
0.74 0.11 0.15
Matches are distributed among these distances:
42 4 0.02
43 9 0.05
45 7 0.04
46 88 0.49
47 53 0.30
48 6 0.03
50 8 0.04
51 4 0.02
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:74123312 original size:93 final size:93
Alignment explanation
Indices: 74123047--74123312 Score: 442
Period size: 93 Copynumber: 2.9 Consensus size: 93
74123037 CGGATATTTG
* *
74123047 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
** *
74123112 TTGAGTCTAAGTTCCTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
74123140 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
74123205 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* ** * *
74123233 GGCATCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAGCTCATTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
74123298 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
74123313 CTTATGGGCG
Statistics
Matches: 163, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 163 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:74126674 original size:46 final size:44
Alignment explanation
Indices: 74126597--74126707 Score: 127
Period size: 46 Copynumber: 2.5 Consensus size: 44
74126587 GAGACGAGAG
* * *
74126597 CATGTCTGGGACATGCGTCGGCCTCATGATGTAAGCCAGTGTAAGA
1 CATGTCTGGGACATGCATCAGCCTCATGATGT--GCCAGTATAAGA
*
74126643 CATGTCTGGGACATGCATCAG-CTACGA-GATGTGTCAGTATAAGA
1 CATGTCTGGGACATGCATCAGCCT-C-ATGATGTGCCAGTATAAGA
74126687 CATGTCTGGGACATGGCATCA
1 CATGTCTGGGACAT-GCATCA
74126708 ACTTTACACC
Statistics
Matches: 58, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
44 24 0.41
45 8 0.14
46 25 0.43
47 1 0.02
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (44 bp):
CATGTCTGGGACATGCATCAGCCTCATGATGTGCCAGTATAAGA
Found at i:74127455 original size:42 final size:42
Alignment explanation
Indices: 74127395--74127476 Score: 103
Period size: 42 Copynumber: 2.0 Consensus size: 42
74127385 CTATGTTGCC
* *
74127395 CACACGGGTAGACACATGGGCGTG-TGTCTAGGCCATGTGTGA
1 CACACGGCTAGACACATGGGCGTGTTGTCCA-GCCATGTGTGA
* * *
74127437 CACACGGCTAGGCCCATGGGGGTGTTGTCCAGCCATGTGT
1 CACACGGCTAGACACATGGGCGTGTTGTCCAGCCATGTGT
74127477 CCCCTGGACG
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
42 29 0.85
43 5 0.15
ACGTcount: A:0.18, C:0.24, G:0.35, T:0.22
Consensus pattern (42 bp):
CACACGGCTAGACACATGGGCGTGTTGTCCAGCCATGTGTGA
Found at i:74132977 original size:22 final size:22
Alignment explanation
Indices: 74132949--74133003 Score: 110
Period size: 22 Copynumber: 2.5 Consensus size: 22
74132939 GACCAGGGTG
74132949 CACGGGCGTGTCCTAGTTCCCA
1 CACGGGCGTGTCCTAGTTCCCA
74132971 CACGGGCGTGTCCTAGTTCCCA
1 CACGGGCGTGTCCTAGTTCCCA
74132993 CACGGGCGTGT
1 CACGGGCGTGT
74133004 GACTCTATTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.13, C:0.35, G:0.31, T:0.22
Consensus pattern (22 bp):
CACGGGCGTGTCCTAGTTCCCA
Found at i:74134917 original size:15 final size:15
Alignment explanation
Indices: 74134894--74134951 Score: 80
Period size: 15 Copynumber: 3.9 Consensus size: 15
74134884 GTATCGTATC
*
74134894 TTGGGTTTCTTTATT
1 TTGGATTTCTTTATT
74134909 TTGGATTTCTTTATT
1 TTGGATTTCTTTATT
* * *
74134924 TTGGGTTTCTCTATC
1 TTGGATTTCTTTATT
74134939 TTGGATTTCTTTA
1 TTGGATTTCTTTA
74134952 CTCGGCTATC
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 37 1.00
ACGTcount: A:0.10, C:0.10, G:0.17, T:0.62
Consensus pattern (15 bp):
TTGGATTTCTTTATT
Found at i:74134928 original size:30 final size:30
Alignment explanation
Indices: 74134894--74134951 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
74134884 GTATCGTATC
* *
74134894 TTGGGTTTCTTTATTTTGGATTTCTTTATT
1 TTGGGTTTCTCTATCTTGGATTTCTTTATT
74134924 TTGGGTTTCTCTATCTTGGATTTCTTTA
1 TTGGGTTTCTCTATCTTGGATTTCTTTA
74134952 CTCGGCTATC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.10, C:0.10, G:0.17, T:0.62
Consensus pattern (30 bp):
TTGGGTTTCTCTATCTTGGATTTCTTTATT
Found at i:74141796 original size:40 final size:40
Alignment explanation
Indices: 74141739--74141907 Score: 254
Period size: 40 Copynumber: 4.3 Consensus size: 40
74141729 GGACTTTAGG
*
74141739 CCCGGATATA-GTT-CCAGCACT-AAGCCTGCGGGATTTAA
1 CCCGGATATACTTTACCAGCA-TGAAGCCTGCGGGATTTAA
* *
74141777 CCCGGATATACTTTACCAGCATGAAGCATGCTGGATTTAA
1 CCCGGATATACTTTACCAGCATGAAGCCTGCGGGATTTAA
74141817 CCCGGATATACTTTACCAGCATGAAGCCTGCGGGATTTAA
1 CCCGGATATACTTTACCAGCATGAAGCCTGCGGGATTTAA
* * *
74141857 CCCGGATATACATTACCAGCACGATGCCTGCGGGATTTAA
1 CCCGGATATACTTTACCAGCATGAAGCCTGCGGGATTTAA
74141897 CCCGGATATAC
1 CCCGGATATAC
74141908 AATATATCGA
Statistics
Matches: 120, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
38 10 0.08
39 3 0.03
40 107 0.89
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.24
Consensus pattern (40 bp):
CCCGGATATACTTTACCAGCATGAAGCCTGCGGGATTTAA
Found at i:74145260 original size:54 final size:54
Alignment explanation
Indices: 74145177--74145851 Score: 913
Period size: 54 Copynumber: 12.5 Consensus size: 54
74145167 TAGTATTATT
* ** *
74145177 GAAATACCCCTTTAGGGTAGAATTACTAAAATACCATTGTAAGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAAGGTAAAATTACC
* * * * *
74145231 AAAATACCACTTTAGGGTAGAATTACTAAAATACCCCTGTAAGGTAGAATTATC
1 GAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAAGGTAAAATTACC
* * *
74145285 AAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAAGGCAAAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAAGGTAAAATTACC
* * * * *
74145339 GACATACCCCTATAAGGTAGAATTACTGAAATACCCCTATAAGGTAAAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAAGGTAAAATTACC
* * *
74145393 GAAATACCCCTATAGGGTAGAATTACTAAAATACCCCTGTAGGGCAAAATTA-C
1 GAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAAGGTAAAATTACC
* * * *
74145446 TAACATACCCCTATAAGGTAGAATTACTGAAATACCCCTGTAAGGTAAAATTACC
1 GAA-ATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAAGGTAAAATTACC
* * *
74145501 GAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGCAAAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAAGGTAAAATTACC
* * * *
74145555 GACATACCCCTGTAAGGTAGAATTACTGAAATACCCCTATAAGGTAAAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAAGGTAAAATTACC
*
74145609 GAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAAGGTAAAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAAGGTAAAATTACC
*
74145663 GAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAAGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAAGGTAAAATTACC
* * * * *
74145717 GAAATACCCATGTAGGATAGAATTACTAAAATACCCCTATAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAAGGTAAAATTACC
* * * *
74145771 GAAATACCCTTGTAGGGTAGAAATACTGAAATACCCCTGTAGGGTAGAAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAAGGTA-AAATTACC
* *
74145826 GAGATA-CCCTCGTAGGGTAAAATTAC
1 GAAATACCCCT-GTAGGGTAGAATTAC
74145852 CATTTTGCCT
Statistics
Matches: 554, Mismatches: 63, Indels: 7
0.89 0.10 0.01
Matches are distributed among these distances:
53 3 0.01
54 523 0.94
55 28 0.05
ACGTcount: A:0.39, C:0.20, G:0.17, T:0.25
Consensus pattern (54 bp):
GAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAAGGTAAAATTACC
Found at i:74145835 original size:27 final size:27
Alignment explanation
Indices: 74145159--74145851 Score: 789
Period size: 27 Copynumber: 25.6 Consensus size: 27
74145149 AATCTCATAT
* * *
74145159 CTGTAGGCTAGTATTATTGAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
* * *
74145186 CTTTAGGGTAGAATTACTAAAATACCA
1 CTGTAGGGTAGAATTACTGAAATACCC
* * ** *
74145213 TTGTAAGGTAGAATTACCAAAATACCA
1 CTGTAGGGTAGAATTACTGAAATACCC
* *
74145240 CTTTAGGGTAGAATTACTAAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
* *
74145267 CTGTAAGGTAGAATTA-TCAAAATACCC
1 CTGTAGGGTAGAATTACT-GAAATACCC
*
74145294 CTGTAGGGTAGAATTACTAAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
* * * *
74145321 CTGTAAGGCAAAATTACTGACATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
* *
74145348 CTATAAGGTAGAATTACTGAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
* * * *
74145375 CTATAAGGTAAAATTACCGAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
* *
74145402 CTATAGGGTAGAATTACTAAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
* *
74145429 CTGTAGGGCAAAATTACT-AACATACCC
1 CTGTAGGGTAGAATTACTGAA-ATACCC
* *
74145456 CTATAAGGTAGAATTACTGAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
* * *
74145483 CTGTAAGGTAAAATTACCGAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
*
74145510 CTGTAGGGTAGAATTACTAAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
* * *
74145537 CTGTAGGGCAAAATTACTGACATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
*
74145564 CTGTAAGGTAGAATTACTGAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
* * * *
74145591 CTATAAGGTAAAATTACCGAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
74145618 CTGTAGGGTAGAATTACTGAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
* * *
74145645 CTGTAAGGTAAAATTACCGAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
*
74145672 CTGTAGGGTAGAATTACTAAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
* *
74145699 CTGTAAGGTAGAATTACCGAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
* * *
74145726 ATGTAGGATAGAATTACTAAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
* *
74145753 CTATAGGGTAGAATTACCGAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
* *
74145780 TTGTAGGGTAGAAATACTGAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
* *
74145807 CTGTAGGGTAGAAATTACCGAGATA-CC
1 CTGTAGGGTAG-AATTACTGAAATACCC
*
74145834 CTCGTAGGGTAAAATTAC
1 CT-GTAGGGTAGAATTAC
74145852 CATTTTGCCT
Statistics
Matches: 569, Mismatches: 91, Indels: 12
0.85 0.14 0.02
Matches are distributed among these distances:
26 3 0.01
27 545 0.96
28 21 0.04
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.25
Consensus pattern (27 bp):
CTGTAGGGTAGAATTACTGAAATACCC
Found at i:74146213 original size:22 final size:22
Alignment explanation
Indices: 74146185--74146235 Score: 93
Period size: 22 Copynumber: 2.3 Consensus size: 22
74146175 TCGATGGCTC
74146185 TGTGCCAACCTAAATATGACTT
1 TGTGCCAACCTAAATATGACTT
*
74146207 TGTGCCAACCTAAATATGGCTT
1 TGTGCCAACCTAAATATGACTT
74146229 TGTGCCA
1 TGTGCCA
74146236 TCTAGACTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (22 bp):
TGTGCCAACCTAAATATGACTT
Found at i:74146246 original size:22 final size:21
Alignment explanation
Indices: 74146178--74146257 Score: 88
Period size: 22 Copynumber: 3.7 Consensus size: 21
74146168 CCCGTTATCG
*
74146178 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCC-ACCTAAAT
*
74146200 ATGACTTTGTGCCAACCTAAAT
1 ATGGCTTTGTGCC-ACCTAAAT
* *
74146222 ATGGCTTTGTGCCATCTAGACT
1 ATGGCTTTGTGCCACCTA-AAT
*
74146244 ATGGCTTCGTGCCA
1 ATGGCTTTGTGCCA
74146258 AACGTATTTA
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
21 4 0.08
22 47 0.92
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.31
Consensus pattern (21 bp):
ATGGCTTTGTGCCACCTAAAT
Found at i:74146446 original size:27 final size:27
Alignment explanation
Indices: 74146420--74146523 Score: 122
Period size: 27 Copynumber: 3.9 Consensus size: 27
74146410 TATTAAGTGG
* * *
74146420 CTTTGCCACATTATCTGTTTTTGGTGG
1 CTTTGCCACAATATCTGTTTCTGGTGA
*
74146447 CTATGCCACAAATATCTG-TTCTGGTGA
1 CTTTGCCAC-AATATCTGTTTCTGGTGA
* *
74146474 CTCTGCCACAATATCTGTATCTGGTGA
1 CTTTGCCACAATATCTGTTTCTGGTGA
*
74146501 CTTTGTCACAATATCTG-TTCTGG
1 CTTTGCCACAATATCTGTTTCTGG
74146524 CAGCCATGCT
Statistics
Matches: 66, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
26 13 0.20
27 46 0.70
28 7 0.11
ACGTcount: A:0.19, C:0.22, G:0.19, T:0.39
Consensus pattern (27 bp):
CTTTGCCACAATATCTGTTTCTGGTGA
Found at i:74146650 original size:6 final size:6
Alignment explanation
Indices: 74146641--74146782 Score: 85
Period size: 6 Copynumber: 23.0 Consensus size: 6
74146631 TTGCATTCAC
* *
74146641 ATTCTG ATTCTG ATTCT- ATTACCTG ATACTG ATTCTG ATTCTG -TCACCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
* * * * * *
74146691 ATTCTG ATTTTG ATTTTG ATTCTG GTTCTG -TTACCTA ATACTG ATTCTT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
* * *
74146740 ATTTTG -TCACCTA ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
74146783 TCACCTAATT
Statistics
Matches: 105, Mismatches: 19, Indels: 24
0.71 0.13 0.16
Matches are distributed among these distances:
5 7 0.07
6 85 0.81
7 8 0.08
8 5 0.05
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:74146672 original size:25 final size:25
Alignment explanation
Indices: 74146644--74146705 Score: 88
Period size: 25 Copynumber: 2.5 Consensus size: 25
74146634 CATTCACATT
*
74146644 CTGATTCTGATTCTATTACCTGATA
1 CTGATTCTGATTCTATCACCTGATA
* *
74146669 CTGATTCTGATTCTGTCACCTGATT
1 CTGATTCTGATTCTATCACCTGATA
*
74146694 CTGATTTTGATT
1 CTGATTCTGATT
74146706 TTGATTCTGG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.47
Consensus pattern (25 bp):
CTGATTCTGATTCTATCACCTGATA
Found at i:74146711 original size:37 final size:37
Alignment explanation
Indices: 74146670--74146745 Score: 100
Period size: 37 Copynumber: 2.1 Consensus size: 37
74146660 TACCTGATAC
* *
74146670 TGATTCTGATTCTGTCACCTGATTCTGATT-TTGATTT
1 TGATTCTGATTCTGTCACCTAATACTGATTCTT-ATTT
* *
74146707 TGATTCTGGTTCTGTTACCTAATACTGATTCTTATTT
1 TGATTCTGATTCTGTCACCTAATACTGATTCTTATTT
74146744 TG
1 TG
74146746 TCACCTAATT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
37 32 0.94
38 2 0.06
ACGTcount: A:0.17, C:0.16, G:0.16, T:0.51
Consensus pattern (37 bp):
TGATTCTGATTCTGTCACCTAATACTGATTCTTATTT
Found at i:74146736 original size:25 final size:25
Alignment explanation
Indices: 74146707--74146770 Score: 83
Period size: 25 Copynumber: 2.6 Consensus size: 25
74146697 ATTTTGATTT
* *
74146707 TGATTCTGGTTCTGTTACCTAATAC
1 TGATTCTGATTCTGTCACCTAATAC
* * *
74146732 TGATTCTTATTTTGTCACCTAATTC
1 TGATTCTGATTCTGTCACCTAATAC
74146757 TGATTCTGATTCTG
1 TGATTCTGATTCTG
74146771 ATTCTGATTC
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.48
Consensus pattern (25 bp):
TGATTCTGATTCTGTCACCTAATAC
Found at i:74146748 original size:62 final size:62
Alignment explanation
Indices: 74146641--74146806 Score: 224
Period size: 62 Copynumber: 2.7 Consensus size: 62
74146631 TTGCATTCAC
* * * *
74146641 ATTCTGATTCTGATTCTATTACCTGATACTGATTCTGATTCTGTCACCTGATTCTGATTTTG
1 ATTCTGATTCTGATTCTGTTACCTAATACTGATTCTGATTCTGTCACCTAATTCTGATTCTG
* * * *
74146703 ATTTTGATTCTGGTTCTGTTACCTAATACTGATTCTTATTTTGTCACCTAATTCTGATTCTG
1 ATTCTGATTCTGATTCTGTTACCTAATACTGATTCTGATTCTGTCACCTAATTCTGATTCTG
* ** *
74146765 ATTCTGATTCTGATTCTGTCACCTAATTTTGATTTTGATTCT
1 ATTCTGATTCTGATTCTGTTACCTAATACTGATTCTGATTCT
74146807 CATTTTGATT
Statistics
Matches: 88, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
62 88 1.00
ACGTcount: A:0.19, C:0.18, G:0.13, T:0.49
Consensus pattern (62 bp):
ATTCTGATTCTGATTCTGTTACCTAATACTGATTCTGATTCTGTCACCTAATTCTGATTCTG
Found at i:74146772 original size:37 final size:37
Alignment explanation
Indices: 74146731--74146818 Score: 122
Period size: 37 Copynumber: 2.4 Consensus size: 37
74146721 TTACCTAATA
* *
74146731 CTGATTCTTATTTTGTCACCTAATTCTGATTCTGATT
1 CTGATTCTGATTCTGTCACCTAATTCTGATTCTGATT
* *
74146768 CTGATTCTGATTCTGTCACCTAATTTTGATTTTGATT
1 CTGATTCTGATTCTGTCACCTAATTCTGATTCTGATT
* *
74146805 CTCATTTTGATTCT
1 CTGATTCTGATTCT
74146819 AGTTCTGATA
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 45 1.00
ACGTcount: A:0.18, C:0.18, G:0.11, T:0.52
Consensus pattern (37 bp):
CTGATTCTGATTCTGTCACCTAATTCTGATTCTGATT
Found at i:74158124 original size:47 final size:46
Alignment explanation
Indices: 74158048--74158312 Score: 207
Period size: 47 Copynumber: 5.6 Consensus size: 46
74158038 TTGGGTTATG
* * **
74158048 TGAGAGCCAGTATAAGACCATGTCTGGGACATGGCATCGGTGTAGAGA
1 TGAGTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTAGAGA
* *
74158096 TGAGTGCCAGTGTAAGACATGTCTGGGACATGTATCGGCCTCGACGA
1 TGAGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTAGA-GA
* * *
74158143 TGA-TAGCCAGTGTAAGACATGTCTAGGACATGCATC-GACTA-AGT
1 TGAGT-GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTAGAGA
** * * * *
74158187 TTCGTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCACGTATACA
1 TGAGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGC-C-TAGAGA
* * * * *
74158235 CGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCT--CGA
1 TGAGTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTAGAGA
74158281 TGGAGATAGCCAGTGTAAGACCATGTCTGGGA
1 T-GAG-T-GCCAGTGTAAGA-CATGTCTGGGA
74158313 TATGGTAGCA
Statistics
Matches: 178, Mismatches: 27, Indels: 23
0.78 0.12 0.10
Matches are distributed among these distances:
44 31 0.17
45 3 0.02
46 15 0.08
47 53 0.30
48 30 0.17
49 38 0.21
50 8 0.04
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.23
Consensus pattern (46 bp):
TGAGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTAGAGA
Found at i:74158265 original size:49 final size:49
Alignment explanation
Indices: 74158192--74158317 Score: 159
Period size: 49 Copynumber: 2.6 Consensus size: 49
74158182 TAAGTTTCGT
74158192 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAG-CACGTATACACGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACG-ATACA-GAGA
* ** *
74158240 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATGGAGATA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACGATACAGAGA
* *
74158289 GCCAGTGTAAGACCATGTCTGGGATATGG
1 GCTAGTGTAAGACCATGTCTGGGACATGG
74158318 TAGCAGAAAC
Statistics
Matches: 69, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
48 12 0.17
49 44 0.64
50 10 0.14
51 3 0.04
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (49 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACGATACAGAGA
Found at i:74167374 original size:55 final size:55
Alignment explanation
Indices: 74167258--74167379 Score: 131
Period size: 55 Copynumber: 2.2 Consensus size: 55
74167248 CTACCAGAAC
* * *
74167258 AACACAGGTGTGCGACACGCCCGTGTGAAAGACCCGTGGTTGAAACTGAGAAACT
1 AACACGGGCGTGCGACACGCCCGTGTGAAACACCCGTGGTTGAAACTGAGAAACT
* * ** * *
74167313 AGCACGGGCGTGCGACACGCCTGTGTTTAACACCCGTGGTT-AAACCT-ATTAAATT
1 AACACGGGCGTGCGACACGCCCGTGTGAAACACCCGTGGTTGAAA-CTGA-GAAACT
74167368 AACACGGGCGTG
1 AACACGGGCGTG
74167380 GAGCTTGAAC
Statistics
Matches: 55, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
54 4 0.07
55 51 0.93
ACGTcount: A:0.28, C:0.25, G:0.28, T:0.20
Consensus pattern (55 bp):
AACACGGGCGTGCGACACGCCCGTGTGAAACACCCGTGGTTGAAACTGAGAAACT
Found at i:74174212 original size:42 final size:43
Alignment explanation
Indices: 74174152--74174267 Score: 148
Period size: 43 Copynumber: 2.7 Consensus size: 43
74174142 ACATGTGTTA
74174152 TCGTGTAAGACCACGTCTGGGACGTTGGCATC-ATACTTGATT
1 TCGTGTAAGACCACGTCTGGGACGTTGGCATCGATACTTGATT
* * *
74174194 TCGTGTAAAACC-CTGTCTGGGATAG-TGGCATCGATATTTGATT
1 TCGTGTAAGACCAC-GTCTGGGA-CGTTGGCATCGATACTTGATT
* *
74174237 ACATGTAAGACCACGTCTGGGACGTTGGCAT
1 TCGTGTAAGACCACGTCTGGGACGTTGGCAT
74174268 TGTACAAACT
Statistics
Matches: 62, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
41 1 0.02
42 27 0.44
43 33 0.53
44 1 0.02
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (43 bp):
TCGTGTAAGACCACGTCTGGGACGTTGGCATCGATACTTGATT
Found at i:74175129 original size:20 final size:21
Alignment explanation
Indices: 74175093--74175132 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
74175083 TGATTTGGTT
74175093 GTAAAATGGTTGAGAATTTGG
1 GTAAAATGGTTGAGAATTTGG
*
74175114 GTAAAAT-GTTGTGAATTTG
1 GTAAAATGGTTGAGAATTTG
74175133 ATGCTTGTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.33, C:0.00, G:0.30, T:0.38
Consensus pattern (21 bp):
GTAAAATGGTTGAGAATTTGG
Found at i:74195642 original size:21 final size:22
Alignment explanation
Indices: 74195609--74195652 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
74195599 ATAAGATAAT
*
74195609 AAACATATTTAA-TAATACATGA
1 AAACATATGTAATTAATA-ATGA
74195631 AAACATA-GTAATTAATAATGA
1 AAACATATGTAATTAATAATGA
74195652 A
1 A
74195653 TTTTGAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.57, C:0.07, G:0.07, T:0.30
Consensus pattern (22 bp):
AAACATATGTAATTAATAATGA
Found at i:74195681 original size:20 final size:20
Alignment explanation
Indices: 74195645--74195682 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
74195635 ATAGTAATTA
*
74195645 ATAATGAATTTTGAAATAGT
1 ATAATGAATTTTAAAATAGT
74195665 ATAAT-AATTTATAAAATA
1 ATAATGAATTT-TAAAATA
74195683 CTAATTTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 5 0.31
20 11 0.69
ACGTcount: A:0.53, C:0.00, G:0.08, T:0.39
Consensus pattern (20 bp):
ATAATGAATTTTAAAATAGT
Found at i:74195828 original size:13 final size:13
Alignment explanation
Indices: 74195774--74195838 Score: 51
Period size: 13 Copynumber: 4.6 Consensus size: 13
74195764 CTTAATATAA
*
74195774 AAATAATAATGTG
1 AAATAATAATATG
*
74195787 AATAATAATATACATG
1 -A-AATAATA-ATATG
74195803 AAAATATATAATA-G
1 -AAATA-ATAATATG
74195817 ATAATAATAATATG
1 A-AATAATAATATG
74195831 AAATAATA
1 AAATAATA
74195839 TATTGTTAAA
Statistics
Matches: 43, Mismatches: 3, Indels: 11
0.75 0.05 0.19
Matches are distributed among these distances:
13 14 0.33
14 8 0.19
15 13 0.30
16 8 0.19
ACGTcount: A:0.60, C:0.02, G:0.08, T:0.31
Consensus pattern (13 bp):
AAATAATAATATG
Found at i:74195868 original size:8 final size:8
Alignment explanation
Indices: 74195855--74196042 Score: 82
Period size: 8 Copynumber: 24.2 Consensus size: 8
74195845 TAAAATGTAA
74195855 AATAATAT
1 AATAATAT
74195863 AATAATAT
1 AATAATAT
*
74195871 AAAAATAT
1 AATAATAT
74195879 -ATAA-AT
1 AATAATAT
* *
74195885 ATTATGTGAT
1 AATA-AT-AT
74195895 AA-AA-AT
1 AATAATAT
74195901 -ATAATAT
1 AATAATAT
74195908 AATAA-AT
1 AATAATAT
*
74195915 AATAA-GT
1 AATAATAT
74195922 AATAATAT
1 AATAATAT
* *
74195930 ACGT--TAA
1 A-ATAATAT
74195937 AATATATAT
1 AATA-ATAT
*
74195946 ATTAATAT
1 AATAATAT
* *
74195954 GATAATAG
1 AATAATAT
*
74195962 AAAAATAT
1 AATAATAT
74195970 GAAGTAATAT
1 -AA-TAATAT
74195980 AAT-ATAAT
1 AATAAT-AT
74195988 AA-AATAT
1 AATAATAT
74195995 AAGTAA-AT
1 AA-TAATAT
74196003 AATAATAT
1 AATAATAT
74196011 AA-AATAT
1 AATAATAT
74196018 -ATAATA-
1 AATAATAT
* *
74196024 CATATATAA
1 AATA-ATAT
74196033 AATAATAT
1 AATAATAT
74196041 AA
1 AA
74196043 ATACAATTTA
Statistics
Matches: 135, Mismatches: 22, Indels: 46
0.67 0.11 0.23
Matches are distributed among these distances:
5 1 0.01
6 8 0.06
7 44 0.33
8 58 0.43
9 16 0.12
10 8 0.06
ACGTcount: A:0.61, C:0.01, G:0.05, T:0.34
Consensus pattern (8 bp):
AATAATAT
Found at i:74195984 original size:5 final size:5
Alignment explanation
Indices: 74195974--74196042 Score: 61
Period size: 5 Copynumber: 13.6 Consensus size: 5
74195964 AAATATGAAG
* *
74195974 TAATA TAATA TAATA AAATA TAAGTA -AATAA TAATA TAAAA T-ATA TAATA
1 TAATA TAATA TAATA TAATA TAA-TA TAAT-A TAATA TAATA TAATA TAATA
* *
74196024 CATATA TAAAA TAATA TAA
1 TA-ATA TAATA TAATA TAA
74196043 ATACAATTTA
Statistics
Matches: 51, Mismatches: 8, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
4 4 0.08
5 38 0.75
6 9 0.18
ACGTcount: A:0.64, C:0.01, G:0.01, T:0.33
Consensus pattern (5 bp):
TAATA
Found at i:74196003 original size:20 final size:21
Alignment explanation
Indices: 74195974--74196045 Score: 62
Period size: 23 Copynumber: 3.4 Consensus size: 21
74195964 AAATATGAAG
74195974 TAATATAATATAATAAAATATA
1 TAATA-AATATAATAAAATATA
*
74195996 -AGTAAATAATAATATAAAATATA
1 TAATAAAT-AT-A-ATAAAATATA
*
74196019 TAATACATAT-ATAAAATA-A
1 TAATAAATATAATAAAATATA
74196038 T-ATAAATA
1 TAATAAATA
74196046 CAATTTAGAA
Statistics
Matches: 42, Mismatches: 4, Indels: 12
0.72 0.07 0.21
Matches are distributed among these distances:
18 6 0.14
19 2 0.05
20 11 0.26
21 5 0.12
22 1 0.02
23 12 0.29
24 5 0.12
ACGTcount: A:0.64, C:0.01, G:0.01, T:0.33
Consensus pattern (21 bp):
TAATAAATATAATAAAATATA
Found at i:74196017 original size:38 final size:39
Alignment explanation
Indices: 74195896--74196018 Score: 100
Period size: 39 Copynumber: 3.2 Consensus size: 39
74195886 TTATGTGATA
74195896 AAAATATAATATAAT-AAATAATAAGT-AATAAT-ATACGTT
1 AAAATATAATATAATAAAATAATAAGTAAATAATAATA---T
* * * *
74195935 AAAATAT-ATATATTAATATGATAA-TAGA-AA-AATAT
1 AAAATATAATATAATAAAATAATAAGTAAATAATAATAT
74195970 GAAGTAATATAATATAATAAAAT-ATAAGTAAATAATAATAT
1 -AA--AATATAATATAATAAAATAATAAGTAAATAATAATAT
74196011 AAAATATA
1 AAAATATA
74196019 TAATACATAT
Statistics
Matches: 67, Mismatches: 7, Indels: 21
0.71 0.07 0.22
Matches are distributed among these distances:
35 1 0.01
36 2 0.03
38 27 0.40
39 28 0.42
40 4 0.06
41 5 0.07
ACGTcount: A:0.61, C:0.01, G:0.06, T:0.33
Consensus pattern (39 bp):
AAAATATAATATAATAAAATAATAAGTAAATAATAATAT
Found at i:74196042 original size:21 final size:20
Alignment explanation
Indices: 74195978--74196063 Score: 76
Period size: 21 Copynumber: 4.5 Consensus size: 20
74195968 ATGAAGTAAT
*
74195978 ATAATATAATAAAATAT-AA
1 ATAATATAATACAATATAAA
*
74195997 GTAA-ATAAT--AATATAAA
1 ATAATATAATACAATATAAA
74196014 AT-ATATAATACATATATAAA
1 ATAATATAATACA-ATATAAA
* *
74196034 ATAATATAAATACAATTTAGA
1 ATAATAT-AATACAATATAAA
74196055 ATAA-ATAAT
1 ATAATATAAT
74196064 TTATAAATAA
Statistics
Matches: 56, Mismatches: 4, Indels: 14
0.76 0.05 0.19
Matches are distributed among these distances:
16 6 0.11
17 8 0.14
18 5 0.09
19 7 0.12
20 11 0.20
21 13 0.23
22 6 0.11
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (20 bp):
ATAATATAATACAATATAAA
Found at i:74198021 original size:206 final size:206
Alignment explanation
Indices: 74197664--74198425 Score: 1114
Period size: 206 Copynumber: 3.7 Consensus size: 206
74197654 AAATCTGCTT
* * *
74197664 CTTCGATTTGTTCTCTGACAATACAAAGATGCCAAATCATCTTGGATTTGCTTCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCAC
* * * * *
74197729 GCGAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
* * * *
74197794 GGATCTGCTTCAGTCTAATCATCTGAAGGTTAGATTTGCTATGTGTCTGCCCTCCGTCGAATATG
131 GGATCTGCTTCAGTATAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCATTGAATATG
74197859 GAGATGCCAAA
196 GAGATGCCAAA
74197870 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCAC
* * *
74197935 GTGAAAGCTAAATCAGCTATGAT-TTCGATTTGTTACTTGTAAACACAAGGATGCCAAATCATCT
66 GTGAAAGCCAAATCAGCTATG-TCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCT
* * *
74197999 TGGATCTGCTTCAGTATAATCATCTGAAGGTTAGATCTGCCATGTGTCTGTCCTCCTTTGAATAT
130 TGGATCTGCTTCAGTATAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCATTGAATAT
*
74198064 GGAGACGCCAAA
195 GGAGATGCCAAA
74198076 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCAC
* *
74198141 GTGAAAGCTAAATCAGCTATGAT-TTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCT
66 GTGAAAGCCAAATCAGCTATG-TCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCT
* ** * ** * *** * *
74198205 TGGATCTACTTCAGTATAAAAACCTGAAGGCCAAATCCATTATGTATCTGCTCTCCATTGAATAT
130 TGGATCTGCTTCAGTATAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCATTGAATAT
74198270 GGAGATGCCAAA
195 GGAGATGCCAAA
* * * * * *
74198282 CTTCGATTTGTCCTCTTACAATACAGATATGCCAAATCATCTTAGATTTGCTTCATCTTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCAC
* *
74198347 GTGAAAGCCAAATCAGCTATGTCTTCAATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
74198412 GGATCTTGCTTCAG
131 GGATC-TGCTTCAG
74198426 CCAGATCTAC
Statistics
Matches: 507, Mismatches: 46, Indels: 5
0.91 0.08 0.01
Matches are distributed among these distances:
205 1 0.00
206 498 0.98
207 8 0.02
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (206 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
GGATCTGCTTCAGTATAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCATTGAATATG
GAGATGCCAAA
Found at i:74199341 original size:24 final size:23
Alignment explanation
Indices: 74199314--74199382 Score: 102
Period size: 24 Copynumber: 2.9 Consensus size: 23
74199304 CTCTTCTCTC
*
74199314 TTTTTATTTTTTTCTTTTTTTTG
1 TTTTTTTTTTTTTCTTTTTTTTG
*
74199337 TTTTTTTTTTTGTTGTTTTTTTTG
1 TTTTTTTTTTT-TTCTTTTTTTTG
74199361 TTTGTTTTTTTTTTCTTTTTTT
1 TTT-TTTTTTTTTTCTTTTTTT
74199383 GATTTTTGAA
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
23 10 0.24
24 23 0.56
25 8 0.20
ACGTcount: A:0.01, C:0.03, G:0.07, T:0.88
Consensus pattern (23 bp):
TTTTTTTTTTTTTCTTTTTTTTG
Found at i:74199343 original size:12 final size:12
Alignment explanation
Indices: 74199314--74199389 Score: 84
Period size: 12 Copynumber: 6.4 Consensus size: 12
74199304 CTCTTCTCTC
*
74199314 TTTTTATTTTT-
1 TTTTTTTTTTTG
*
74199325 TTCTTTTTTTTG
1 TTTTTTTTTTTG
74199337 TTTTTTTTTTTG
1 TTTTTTTTTTTG
*
74199349 TTGTTTTTTTTG
1 TTTTTTTTTTTG
*
74199361 TTTGTTTTTTT-
1 TTTTTTTTTTTG
*
74199372 TTTCTTTTTTTG
1 TTTTTTTTTTTG
74199384 ATTTTT
1 -TTTTT
74199390 GAAACCTCAA
Statistics
Matches: 54, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
11 19 0.35
12 31 0.57
13 4 0.07
ACGTcount: A:0.03, C:0.03, G:0.08, T:0.87
Consensus pattern (12 bp):
TTTTTTTTTTTG
Found at i:74199388 original size:15 final size:15
Alignment explanation
Indices: 74199312--74199389 Score: 70
Period size: 15 Copynumber: 5.1 Consensus size: 15
74199302 TCCTCTTCTC
*
74199312 TCTTTTTAT-TTTTT
1 TCTTTTTTTGTTTTT
74199326 TCTTTTTTTTGTTTTT
1 TC-TTTTTTTGTTTTT
74199342 T-TTTTTGTTGTTTTT
1 TCTTTTT-TTGTTTTT
* *
74199357 TTTGTTTGTTTTTTTTT
1 TCT-TTT-TTTGTTTTT
*
74199374 TCTTTTTTTGATTTT
1 TCTTTTTTTGTTTTT
74199389 T
1 T
74199390 GAAACCTCAA
Statistics
Matches: 53, Mismatches: 5, Indels: 11
0.77 0.07 0.16
Matches are distributed among these distances:
14 7 0.13
15 23 0.43
16 10 0.19
17 12 0.23
18 1 0.02
ACGTcount: A:0.03, C:0.04, G:0.08, T:0.86
Consensus pattern (15 bp):
TCTTTTTTTGTTTTT
Found at i:74199389 original size:1 final size:1
Alignment explanation
Indices: 74199314--74199382 Score: 66
Period size: 1 Copynumber: 69.0 Consensus size: 1
74199304 CTCTTCTCTC
* * * * * * * *
74199314 TTTTTATTTTTTTCTTTTTTTTGTTTTTTTTTTTGTTGTTTTTTTTGTTTGTTTTTTTTTTCTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
74199379 TTTT
1 TTTT
74199383 GATTTTTGAA
Statistics
Matches: 52, Mismatches: 16, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
1 52 1.00
ACGTcount: A:0.01, C:0.03, G:0.07, T:0.88
Consensus pattern (1 bp):
T
Found at i:74208112 original size:39 final size:40
Alignment explanation
Indices: 74208067--74208234 Score: 106
Period size: 40 Copynumber: 4.2 Consensus size: 40
74208057 CGGGGTTTAG
* * *
74208067 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
74208106 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
74208146 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
74208186 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
74208227 CCGGATAT
1 CCGGATAT
74208235 CATTCGAGTA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 18 0.17
40 61 0.56
41 27 0.25
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:74208217 original size:41 final size:40
Alignment explanation
Indices: 74208090--74208234 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
74208080 CTCGCACAAG
* * * * *
74208090 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
74208130 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
74208170 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
74208211 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
74208235 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:74209452 original size:37 final size:37
Alignment explanation
Indices: 74209423--74209494 Score: 144
Period size: 37 Copynumber: 1.9 Consensus size: 37
74209413 GAACTCCTTC
74209423 CTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAATT
1 CTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAATT
74209460 CTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 CTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
74209495 AAAGGATGAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.33, C:0.22, G:0.14, T:0.31
Consensus pattern (37 bp):
CTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAATT
Found at i:74216181 original size:39 final size:39
Alignment explanation
Indices: 74216109--74216250 Score: 162
Period size: 40 Copynumber: 3.6 Consensus size: 39
74216099 CTCGCACAAG
* * * * *
74216109 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTC-GGACTTAGCCCGGATATAGTCGCTAGCACAAAT
74216149 GCCTTCGGGACTTAGCCC-GATATAGTCGCTAGCACAAAT
1 GCCTTC-GGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
74216188 GCCTTC-GATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
74216228 GCCTTCGGACTTAGCCCGGATAT
1 GCCTTCGGACTTAGCCCGGATAT
74216251 CATTCGAGTA
Statistics
Matches: 88, Mismatches: 10, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
37 2 0.02
38 7 0.08
39 34 0.39
40 43 0.49
41 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (39 bp):
GCCTTCGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:74217475 original size:38 final size:38
Alignment explanation
Indices: 74217433--74217508 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
74217423 CAAGAACTCC
74217433 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
74217471 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
74217509 AAGGATGAAC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.32
Consensus pattern (38 bp):
TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
Found at i:74394199 original size:18 final size:19
Alignment explanation
Indices: 74394162--74394199 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
74394152 TACCGAAAAT
74394162 AAAAAGATTTCATTTGAAA
1 AAAAAGATTTCATTTGAAA
74394181 AAAAAGATTTCATTT-AAA
1 AAAAAGATTTCATTTGAAA
74394199 A
1 A
74394200 CTATTTGATT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 4 0.21
19 15 0.79
ACGTcount: A:0.55, C:0.05, G:0.08, T:0.32
Consensus pattern (19 bp):
AAAAAGATTTCATTTGAAA
Found at i:74400935 original size:12 final size:12
Alignment explanation
Indices: 74400918--74400953 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
74400908 GCCGAATCTA
74400918 CCATCTCTTCTT
1 CCATCTCTTCTT
*
74400930 CCATCTTTTCTT
1 CCATCTCTTCTT
*
74400942 CCTTCTCTTCTT
1 CCATCTCTTCTT
74400954 TCAAACCAGC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.06, C:0.39, G:0.00, T:0.56
Consensus pattern (12 bp):
CCATCTCTTCTT
Found at i:74402034 original size:25 final size:25
Alignment explanation
Indices: 74402005--74402052 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
74401995 TTATAATATG
* * *
74402005 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
74402030 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
74402053 GGGTAAATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:74402125 original size:20 final size:20
Alignment explanation
Indices: 74402100--74402154 Score: 85
Period size: 20 Copynumber: 2.8 Consensus size: 20
74402090 AATGGTATGA
74402100 ATGATATGCACATGACAT-T
1 ATGATATGCACATGACATGT
*
74402119 CATGATATGCACATGATATGT
1 -ATGATATGCACATGACATGT
74402140 ATGATATGCACATGA
1 ATGATATGCACATGA
74402155 GGTATTCATA
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
20 32 0.97
21 1 0.03
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (20 bp):
ATGATATGCACATGACATGT
Found at i:74402133 original size:11 final size:11
Alignment explanation
Indices: 74402100--74402154 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
74402090 AATGGTATGA
74402100 ATGATATGCAC
1 ATGATATGCAC
* *
74402111 ATGACAT--TC
1 ATGATATGCAC
74402120 ATGATATGCAC
1 ATGATATGCAC
*
74402131 ATGATATG--T
1 ATGATATGCAC
74402140 ATGATATGCAC
1 ATGATATGCAC
74402151 ATGA
1 ATGA
74402155 GGTATTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:74402273 original size:24 final size:24
Alignment explanation
Indices: 74402204--74402324 Score: 156
Period size: 24 Copynumber: 5.0 Consensus size: 24
74402194 GGAGGAAGTG
74402204 TAAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
* * *
74402228 GATAAAGGGCTTACGCCTCAGTTAT
1 TA-AAAGGGCTTATGCCCCAGTTAT
*
74402253 TAAAAGGGTTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
74402277 TAAAAGGGCTT-TGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
74402300 TAAAAGAGGC-TAAGCCTCCAGTTAT
1 TAAAAG-GGCTTATGCC-CCAGTTAT
74402325 ATGATAAAGC
Statistics
Matches: 84, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
23 19 0.23
24 36 0.43
25 29 0.35
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (24 bp):
TAAAAGGGCTTATGCCCCAGTTAT
Found at i:74402276 original size:49 final size:47
Alignment explanation
Indices: 74402204--74402324 Score: 154
Period size: 49 Copynumber: 2.5 Consensus size: 47
74402194 GGAGGAAGTG
*
74402204 TAAAAGGGCTTATGCCCCAGTTATGATAAAGGGCTTACGCCTCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTATGA-AAAGGGCTT-CGCCCCAGTTAT
* * *
74402253 TAAAAGGGTTTATGCCCCAGTTATTAAAAGGGCTTTGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTATGAAAAGGGCTTCGCCCCAGTTAT
*
74402300 TAAAAGAGGC-TAAGCCTCCAGTTAT
1 TAAAAG-GGCTTATGCC-CCAGTTAT
74402325 ATGATAAAGC
Statistics
Matches: 64, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
47 21 0.33
48 19 0.30
49 24 0.38
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (47 bp):
TAAAAGGGCTTATGCCCCAGTTATGAAAAGGGCTTCGCCCCAGTTAT
Found at i:74402556 original size:31 final size:31
Alignment explanation
Indices: 74402518--74402580 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
74402508 CGTTTACAGT
74402518 AAAGGCTTCGACCCAGTAATATGAAATATGA
1 AAAGGCTTCGACCCAGTAATATGAAATATGA
* **
74402549 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGACCCAGTAATATGAAATATGA
74402580 A
1 A
74402581 GTGTGAAAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGACCCAGTAATATGAAATATGA
Found at i:74408480 original size:55 final size:57
Alignment explanation
Indices: 74408402--74408510 Score: 143
Period size: 56 Copynumber: 1.9 Consensus size: 57
74408392 ATTCCGATTA
* * *
74408402 TGATATGTGATGTGCGAGTAAGACCATGTTT-ATAC-GTTGGCATCGATATGTGACTC
1 TGATATATGATGTGCGACTAAGACCATGTTTGAGACAG-TGGCATCGATATGTGACTC
* *
74408458 TGATATATG-TGTGCGACTAAGACCCTGTTTGGGACAGTGGCATCGATATGTGA
1 TGATATATGATGTGCGACTAAGACCATGTTTGAGACAGTGGCATCGATATGTGA
74408511 TTACATGTAA
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
55 19 0.41
56 26 0.57
57 1 0.02
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (57 bp):
TGATATATGATGTGCGACTAAGACCATGTTTGAGACAGTGGCATCGATATGTGACTC
Found at i:74416784 original size:56 final size:56
Alignment explanation
Indices: 74416681--74416791 Score: 136
Period size: 56 Copynumber: 2.0 Consensus size: 56
74416671 GGATTCCGAT
* * * *
74416681 TCTGATATGTGATGTGCGAGTAAGACCATGTTTATACGTTGGCATCGATATGTGAC
1 TCTGATATATGATGTGCGACTAAGACCATGTTTAGACGTTGGCATCGATAAGTGAC
* *
74416737 TCTGATATATG-TGTGCGACTAAGACCCTGTTTGGGACAG-TGGCATCGATAAGTGA
1 TCTGATATATGATGTGCGACTAAGACCATGTTT-AGAC-GTTGGCATCGATAAGTGA
74416792 TTACATGTAA
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
55 19 0.40
56 27 0.57
57 1 0.02
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (56 bp):
TCTGATATATGATGTGCGACTAAGACCATGTTTAGACGTTGGCATCGATAAGTGAC
Found at i:74418721 original size:17 final size:17
Alignment explanation
Indices: 74418682--74418723 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
74418672 TTATTATAAG
* *
74418682 TATT-TATTTAAATGTG
1 TATTATATTTAAAAGTA
74418698 T-TTATATTTAAAAGTA
1 TATTATATTTAAAAGTA
74418714 TATTATATTT
1 TATTATATTT
74418724 GACGTGTTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
15 2 0.09
16 12 0.55
17 8 0.36
ACGTcount: A:0.36, C:0.00, G:0.07, T:0.57
Consensus pattern (17 bp):
TATTATATTTAAAAGTA
Found at i:74423652 original size:35 final size:35
Alignment explanation
Indices: 74423612--74423682 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
74423602 ATAGTTAATA
*
74423612 AGTAAAGCTCACCATTCATTCATAATTCAAGTAGT
1 AGTAAAGCTCACCATTCATTCAAAATTCAAGTAGT
74423647 AGTAAAGCTCACCATTCATTCAAAATTCAAGTAGT
1 AGTAAAGCTCACCATTCATTCAAAATTCAAGTAGT
74423682 A
1 A
74423683 TGAACATAAT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.30
Consensus pattern (35 bp):
AGTAAAGCTCACCATTCATTCAAAATTCAAGTAGT
Done.