Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 217 of 295
Found at i:74790447 original size:27 final size:27
Alignment explanation
Indices: 74790417--74790594 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
74790407 ATATTGAGTC
* * * *
74790417 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
74790444 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
74790471 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
74790499 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
74790526 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
74790553 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
74790580 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
74790595 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:74790556 original size:82 final size:81
Alignment explanation
Indices: 74790438--74790593 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
74790428 TGCTATATAA
* *
74790438 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
74790503 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
74790520 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
74790584 CACTTAGTGC
65 CACTTAGTGC
74790594 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:74803081 original size:22 final size:22
Alignment explanation
Indices: 74803036--74803083 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
74803026 TAGTCAGGAT
*
74803036 AGCACATAGCCGTAAACAAGAC
1 AGCACATAGCCGTAAACAACAC
*
74803058 AGCACATAGCCGTAAACATCAC
1 AGCACATAGCCGTAAACAACAC
74803080 AGCA
1 AGCA
74803084 ATACTGCCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.44, C:0.29, G:0.17, T:0.10
Consensus pattern (22 bp):
AGCACATAGCCGTAAACAACAC
Found at i:74803306 original size:22 final size:23
Alignment explanation
Indices: 74803278--74803339 Score: 65
Period size: 22 Copynumber: 2.8 Consensus size: 23
74803268 GCAAATACGT
*
74803278 TTGGCACATAGCCATAAT-CAGG
1 TTGGCACAAAGCCATAATGCAGG
* * *
74803300 TTGGCACAGATCCAT-ATGTAGG
1 TTGGCACAAAGCCATAATGCAGG
*
74803322 TTGGCGCAAAGCCATAAT
1 TTGGCACAAAGCCATAAT
74803340 TAGAATAATT
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
21 2 0.06
22 28 0.88
23 2 0.06
ACGTcount: A:0.31, C:0.21, G:0.24, T:0.24
Consensus pattern (23 bp):
TTGGCACAAAGCCATAATGCAGG
Found at i:74803545 original size:41 final size:41
Alignment explanation
Indices: 74803487--74803605 Score: 211
Period size: 41 Copynumber: 2.9 Consensus size: 41
74803477 AAGCCACCGA
* * *
74803487 TGGATCCACGGTTGTCAAGCAACCTTGCGATCCTTAATCGG
1 TGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAATCGG
74803528 TGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAATCGG
1 TGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAATCGG
74803569 TGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAA
1 TGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAA
74803606 CTTCTTCCTC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 75 1.00
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.22
Consensus pattern (41 bp):
TGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAATCGG
Found at i:74803895 original size:27 final size:27
Alignment explanation
Indices: 74803824--74804167 Score: 286
Period size: 27 Copynumber: 12.8 Consensus size: 27
74803814 TTTCACCCTA
* * * *
74803824 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
74803851 CAAGGGTATTTCGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * **
74803878 CAATGGTATTTTTGTAATTTTTGAAAGT
1 CAAGGGTATTTTGGTAATTTTACAAA-T
* **
74803906 CAAGGGTATTTTTGTAATTTTGTAAAGT
1 CAAGGGTATTTTGGTAATTTTACAAA-T
*
74803934 --AGGGTATTTCT-GTAATTTTCCAAAT
1 CAAGGGTATTT-TGGTAATTTTACAAAT
* *
74803959 CAAGGGTATTTCGATAATTTT-CTAAAT
1 CAAGGGTATTTTGGTAATTTTAC-AAAT
* *
74803986 CAGGGGTATTTTGGTAATTTTATAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* ** *
74804013 CAAGTGTATTTCAGTAATTTTACAAGT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *
74804040 CAA-GATATTTCGGTAATTTTACAAGT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *
74804066 CAAAGGTATTTTGGTAATTTCACAAGT
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
74804093 CAGGGGTATTTTGGTAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * **
74804119 CTAGGGGTATTTTGGTAATTTTTCTCAT
1 C-AAGGGTATTTTGGTAATTTTACAAAT
* *
74804147 CGAGGGTATTTTGGTCATTTT
1 CAAGGGTATTTTGGTAATTTT
74804168 GTAAACCAAG
Statistics
Matches: 264, Mismatches: 43, Indels: 20
0.81 0.13 0.06
Matches are distributed among these distances:
25 1 0.00
26 45 0.17
27 192 0.73
28 26 0.10
ACGTcount: A:0.29, C:0.10, G:0.19, T:0.42
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAT
Found at i:74804057 original size:107 final size:108
Alignment explanation
Indices: 74803844--74804114 Score: 302
Period size: 107 Copynumber: 2.5 Consensus size: 108
74803834 TTGGTAAATC
* * ** *
74803844 TACAAACCAAGGGTATTTCGGTAATTTTACAAACCAATGGTATTTTTGTAATTTT-TGAAAGTCA
1 TACAAATCAAGGGTATTTCGGTAATTTT-CAAATCAGGGGTATTTTGGTAATTTTATGAAAGTCA
** * * *
74803908 AGGGTATTTTTGTAATTTTGTAAAGTAGGGTATTTCTGTAATTT
65 AGGGTATTTCAGTAATTTTGTAAAGTAAGATATTTCGGTAATTT
* *
74803952 TCCAAATCAAGGGTATTTCGATAATTTTCTAAATCAGGGGTATTTTGGTAATTTTAT-AAA-TCA
1 TACAAATCAAGGGTATTTCGGTAATTTTC-AAATCAGGGGTATTTTGGTAATTTTATGAAAGTCA
*
74804015 AGTGTATTTCAGTAA-TTT-TACAAGTCAAGATATTTCGGTAATTT
65 AGGGTATTTCAGTAATTTTGTA-AAGT-AAGATATTTCGGTAATTT
* * *
74804059 TACAAGTCAAAGGTATTTTGGTAA-TTTCACAAGTCAGGGGTATTTTGGTAATTTTA
1 TACAAATCAAGGGTATTTCGGTAATTTTCA-AA-TCAGGGGTATTTTGGTAATTTTA
74804115 CAAACTAGGG
Statistics
Matches: 139, Mismatches: 18, Indels: 13
0.82 0.11 0.08
Matches are distributed among these distances:
105 3 0.02
106 13 0.09
107 73 0.53
108 49 0.35
109 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.18, T:0.41
Consensus pattern (108 bp):
TACAAATCAAGGGTATTTCGGTAATTTTCAAATCAGGGGTATTTTGGTAATTTTATGAAAGTCAA
GGGTATTTCAGTAATTTTGTAAAGTAAGATATTTCGGTAATTT
Found at i:74804091 original size:53 final size:53
Alignment explanation
Indices: 74803992--74804139 Score: 156
Period size: 53 Copynumber: 2.8 Consensus size: 53
74803982 AAATCAGGGG
* ** *
74803992 TATTTTGGTAATTTTATAAATC-AAGTGTATTTCAGTAATTTTACAAGTCA-AGA
1 TATTTTGGTAATTTTA-CAATCAAAG-GTATTTTGGTAATTTCACAAGTCAGAGA
* * *
74804045 TATTTCGGTAATTTTACAAGTCAAAGGTATTTTGGTAATTTCACAAGTCAGGGG
1 TATTTTGGTAATTTTACAA-TCAAAGGTATTTTGGTAATTTCACAAGTCAGAGA
* **
74804099 TATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTT
1 TATTTTGGTAATTTTACAATC-AAAGGTATTTTGGTAATTT
74804140 TTCTCATCGA
Statistics
Matches: 80, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
52 2 0.03
53 39 0.49
54 39 0.49
ACGTcount: A:0.31, C:0.08, G:0.18, T:0.43
Consensus pattern (53 bp):
TATTTTGGTAATTTTACAATCAAAGGTATTTTGGTAATTTCACAAGTCAGAGA
Found at i:74806164 original size:15 final size:15
Alignment explanation
Indices: 74806141--74806171 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
74806131 TCAAAAATTC
74806141 CAATACAAAACATAT
1 CAATACAAAACATAT
*
74806156 CAATCCAAAACATAT
1 CAATACAAAACATAT
74806171 C
1 C
74806172 TTTCATAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.26, G:0.00, T:0.19
Consensus pattern (15 bp):
CAATACAAAACATAT
Found at i:74807224 original size:30 final size:30
Alignment explanation
Indices: 74807188--74807246 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
74807178 CACTACAGAG
* *
74807188 AAAGAATTGTTTGATGTAGTGTTTGCTTTA
1 AAAGAATTGTTTGATGTAGTCTTCGCTTTA
*
74807218 AAAGAATTGTTTGTTGTAGTCTTCGCTTT
1 AAAGAATTGTTTGATGTAGTCTTCGCTTT
74807247 TGACAAGTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.24, C:0.07, G:0.22, T:0.47
Consensus pattern (30 bp):
AAAGAATTGTTTGATGTAGTCTTCGCTTTA
Found at i:74810179 original size:81 final size:81
Alignment explanation
Indices: 74810087--74810334 Score: 284
Period size: 81 Copynumber: 3.1 Consensus size: 81
74810077 GTTTACCAAG
*
74810087 TTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCTTTTGTTTATAAAATTACCAAAATA
1 TTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCTTTAGTTTATAAAATTACCAAAATA
*
74810152 CCCCTAGTTTGTAAAA
66 CCCCTAATTTGTAAAA
* * *
74810168 TTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATA-CTCTTAGTTTGTAAAATTATCAAAAT
1 TTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCT-TTAGTTTATAAAATTACCAAAAT
*
74810232 ACCCCTAATTTGTGAAA
65 ACCCCTAATTTGTAAAA
** * *** * * * * *
74810249 TTACTGAAATACCCTTGACCTGTAAAATTATTAAAATACC-CTCGACTTATAAAATTACCAAAGT
1 TTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCTTTAG-TTTATAAAATTACCAAAAT
* **
74810313 ACCCCTGATTTACAAAA
65 ACCCCTAATTTGTAAAA
74810330 TTACC
1 TTACC
74810335 GTTTTACCCT
Statistics
Matches: 139, Mismatches: 25, Indels: 6
0.82 0.15 0.04
Matches are distributed among these distances:
80 4 0.03
81 134 0.96
82 1 0.01
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.33
Consensus pattern (81 bp):
TTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCTTTAGTTTATAAAATTACCAAAATA
CCCCTAATTTGTAAAA
Found at i:74810369 original size:27 final size:27
Alignment explanation
Indices: 74810087--74810373 Score: 229
Period size: 27 Copynumber: 10.6 Consensus size: 27
74810077 GTTTACCAAG
* *
74810087 TTACCAAAATACCCCTGGTTTGTAAAA
1 TTACCAAAATACCCTTGATTTGTAAAA
* * *
74810114 TTACTAAAATACCTTTTG-TTTATAAAA
1 TTACCAAAATACC-CTTGATTTGTAAAA
*
74810141 TTACCAAAATACCCCT-AGTTTGTAAAA
1 TTACCAAAATACCCTTGA-TTTGTAAAA
* *
74810168 TTACCAAAATACCCCTGGTTTGTAAAA
1 TTACCAAAATACCCTTGATTTGTAAAA
*
74810195 TTACCAAAATACTCTT-AGTTTGTAAAA
1 TTACCAAAATACCCTTGA-TTTGTAAAA
* * * *
74810222 TTATCAAAATACCCCTAATTTGTGAAA
1 TTACCAAAATACCCTTGATTTGTAAAA
** **
74810249 TTACTGAAATACCCTTGACCTGTAAAA
1 TTACCAAAATACCCTTGATTTGTAAAA
** * * *
74810276 TTATTAAAATACCCTCGACTTATAAAA
1 TTACCAAAATACCCTTGATTTGTAAAA
* * **
74810303 TTACCAAAGTACCCCTGATTTACAAAA
1 TTACCAAAATACCCTTGATTTGTAAAA
**** **
74810330 TTACCGTTTTACCCTTGATTTACAAAA
1 TTACCAAAATACCCTTGATTTGTAAAA
*
74810357 TTACCGAAATACCCTTG
1 TTACCAAAATACCCTTG
74810374 TAGGGTAGAA
Statistics
Matches: 210, Mismatches: 44, Indels: 12
0.79 0.17 0.05
Matches are distributed among these distances:
26 1 0.00
27 206 0.98
28 3 0.01
ACGTcount: A:0.38, C:0.21, G:0.08, T:0.33
Consensus pattern (27 bp):
TTACCAAAATACCCTTGATTTGTAAAA
Found at i:74810392 original size:27 final size:27
Alignment explanation
Indices: 74810362--74810478 Score: 144
Period size: 27 Copynumber: 4.3 Consensus size: 27
74810352 CAAAATTACC
*
74810362 GAAATACCCTTGTAGGGTAGAAATGCT
1 GAAATACCCTTGTAGGGTAGAAATACT
* *
74810389 GAAATACCCTTGAAGGGTAGAAATACC
1 GAAATACCCTTGTAGGGTAGAAATACT
* * * *
74810416 AAAATACCCCTATAGGGTAGAATTACT
1 GAAATACCCTTGTAGGGTAGAAATACT
* *
74810443 GAAATACCCTTGTAGGGTAGAATTACC
1 GAAATACCCTTGTAGGGTAGAAATACT
*
74810470 GAGATACCC
1 GAAATACCC
74810479 CAATTACTGA
Statistics
Matches: 76, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 76 1.00
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.23
Consensus pattern (27 bp):
GAAATACCCTTGTAGGGTAGAAATACT
Found at i:74810485 original size:17 final size:17
Alignment explanation
Indices: 74810463--74810495 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
74810453 TGTAGGGTAG
74810463 AATTACCGAGATACCCC
1 AATTACCGAGATACCCC
*
74810480 AATTACTGAGATACCC
1 AATTACCGAGATACCC
74810496 TTGTGGGGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.36, C:0.30, G:0.12, T:0.21
Consensus pattern (17 bp):
AATTACCGAGATACCCC
Found at i:74811064 original size:31 final size:31
Alignment explanation
Indices: 74811029--74811107 Score: 115
Period size: 31 Copynumber: 2.5 Consensus size: 31
74811019 TTGCATTCAC
*
74811029 ATTCTGATTTTGATTCTGT-TACCTGATACTG
1 ATTCTGATTCTGATTCTGTCT-CCTGATACTG
* *
74811060 ATTCTGATTCTAATTCTGTCTCCTGATTCTG
1 ATTCTGATTCTGATTCTGTCTCCTGATACTG
74811091 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
74811108 AGTTCTGATA
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
31 42 0.98
32 1 0.02
ACGTcount: A:0.18, C:0.19, G:0.14, T:0.49
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCTCCTGATACTG
Found at i:74811068 original size:6 final size:6
Alignment explanation
Indices: 74811029--74811116 Score: 83
Period size: 6 Copynumber: 14.3 Consensus size: 6
74811019 TTGCATTCAC
* * *
74811029 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
74811078 -TCTCCTG ATTCTG ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 AT-T-CTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
74811117 AATATTTCTT
Statistics
Matches: 68, Mismatches: 6, Indels: 16
0.76 0.07 0.18
Matches are distributed among these distances:
5 4 0.06
6 54 0.79
7 8 0.12
8 2 0.03
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:74813157 original size:16 final size:17
Alignment explanation
Indices: 74813136--74813174 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 17
74813126 ACTGTAACGC
74813136 CCCAAAAATCTCA-AAA
1 CCCAAAAATCTCAGAAA
*
74813152 CCCAAAAATCTCAGAAT
1 CCCAAAAATCTCAGAAA
74813169 CCCAAA
1 CCCAAA
74813175 CTTTCTTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 13 0.62
17 8 0.38
ACGTcount: A:0.51, C:0.33, G:0.03, T:0.13
Consensus pattern (17 bp):
CCCAAAAATCTCAGAAA
Found at i:74814297 original size:11 final size:13
Alignment explanation
Indices: 74814272--74814303 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
74814262 GGAAAAAAAT
74814272 GAAAGAAAGAGGA
1 GAAAGAAAGAGGA
74814285 G-AAGAAA-AGGA
1 GAAAGAAAGAGGA
74814296 GAAAGAAA
1 GAAAGAAA
74814304 CATCATGTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 5 0.28
12 12 0.67
13 1 0.06
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (13 bp):
GAAAGAAAGAGGA
Found at i:74825207 original size:44 final size:42
Alignment explanation
Indices: 74825152--74825313 Score: 130
Period size: 43 Copynumber: 3.8 Consensus size: 42
74825142 CAATATGTGT
* *
74825152 TTTTATGTAAGACCACGTCTGAGACATTGGTATCG-ACTTATGA
1 TTTTGTGTAAGACCACGTCTGAGACATTGGCATCGTA-TT-TGA
* * *
74825195 TTTATGTGTAAGACCATGTCTGGGACGTTGGCATCGTATTTGA
1 TTT-TGTGTAAGACCACGTCTGAGACATTGGCATCGTATTTGA
* * * *
74825238 TTTTGTGTAAGACCCCGTCT-AGGATAGTGGCATCAATATTTGA
1 TTTTGTGTAAGACCACGTCTGA-GACATTGGCATC-GTATTTGA
*** * * *
74825281 TTACATATAAGACCACGTCTGGGACGTTGGCAT
1 TTTTGTGTAAGACCACGTCTGAGACATTGGCAT
74825314 TGTAAGAGCT
Statistics
Matches: 93, Mismatches: 21, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
42 24 0.26
43 39 0.42
44 29 0.31
45 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (42 bp):
TTTTGTGTAAGACCACGTCTGAGACATTGGCATCGTATTTGA
Found at i:74829895 original size:13 final size:13
Alignment explanation
Indices: 74829877--74829906 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
74829867 CACACGCCTA
74829877 TGTCCTTGGCCCG
1 TGTCCTTGGCCCG
*
74829890 TGTCCTTGGCTCG
1 TGTCCTTGGCCCG
74829903 TGTC
1 TGTC
74829907 TCTCACACGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.00, C:0.33, G:0.30, T:0.37
Consensus pattern (13 bp):
TGTCCTTGGCCCG
Found at i:74831957 original size:31 final size:32
Alignment explanation
Indices: 74831919--74831980 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 32
74831909 CTCGCTGCAA
* *
74831919 TCTGGTGGCTTTGCCAC-ATATATATATTTGT
1 TCTGGTGGCCTAGCCACAATATATATATTTGT
*
74831950 TCTGGTGGCCTAGCCACAATATCTATATTTG
1 TCTGGTGGCCTAGCCACAATATATATATTTG
74831981 GTGACTTCGT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 15 0.56
32 12 0.44
ACGTcount: A:0.21, C:0.19, G:0.19, T:0.40
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATTTGT
Found at i:74841490 original size:42 final size:40
Alignment explanation
Indices: 74841443--74841547 Score: 120
Period size: 42 Copynumber: 2.5 Consensus size: 40
74841433 TACGTGTAAA
**
74841443 ACCATATCTGGGATATGGCATCGATATGAGACTTTGTATAAG
1 ACCATATCT-GGATATGGCATCGATATGAGA-TTCATATAAG
* * *
74841485 ACCATAGCTGGACTATTGGCATTGATATGAGATTCATGTAAG
1 ACCATATCTGGA-TA-TGGCATCGATATGAGATTCATATAAG
74841527 ACCATATCTTGGATATGGCAT
1 ACCATATC-TGGATATGGCAT
74841548 TGGTATAGTA
Statistics
Matches: 54, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
41 9 0.17
42 26 0.48
43 19 0.35
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.31
Consensus pattern (40 bp):
ACCATATCTGGATATGGCATCGATATGAGATTCATATAAG
Found at i:74842994 original size:16 final size:17
Alignment explanation
Indices: 74842955--74842987 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
74842945 TTTATTTTTG
74842955 TTCTA-TTTTTGATAAT
1 TTCTACTTTTTGATAAT
74842971 TTCTACTTTTTG-TAAT
1 TTCTACTTTTTGATAAT
74842987 T
1 T
74842988 ATTACTTAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.21, C:0.09, G:0.06, T:0.64
Consensus pattern (17 bp):
TTCTACTTTTTGATAAT
Found at i:74849094 original size:35 final size:35
Alignment explanation
Indices: 74849048--74849118 Score: 115
Period size: 35 Copynumber: 2.0 Consensus size: 35
74849038 AAATTGCACT
* **
74849048 TTAGTACTGCTTTTTACCTGCAAACGGATGGTCAA
1 TTAGTACTGCTTTTCACCCACAAACGGATGGTCAA
74849083 TTAGTACTGCTTTTCACCCACAAACGGATGGTCAA
1 TTAGTACTGCTTTTCACCCACAAACGGATGGTCAA
74849118 T
1 T
74849119 CCTAGCGGAT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (35 bp):
TTAGTACTGCTTTTCACCCACAAACGGATGGTCAA
Found at i:74851164 original size:46 final size:48
Alignment explanation
Indices: 74851042--74851171 Score: 155
Period size: 47 Copynumber: 2.8 Consensus size: 48
74851032 TGTAACCCGC
74851042 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA--CCTAGTTACAT
* * *
74851092 --TTAA-CGAACTCGGACTCAACTCAACGAGTTCGGA-C-A-TTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCTAGTT-ACAT
*
74851135 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
74851172 TGCCCAAATA
Statistics
Matches: 70, Mismatches: 6, Indels: 12
0.80 0.07 0.14
Matches are distributed among these distances:
42 2 0.03
43 4 0.06
44 1 0.01
45 3 0.04
46 28 0.40
47 29 0.41
48 3 0.04
ACGTcount: A:0.32, C:0.27, G:0.19, T:0.22
Consensus pattern (48 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCTAGTTACAT
Found at i:74851190 original size:46 final size:44
Alignment explanation
Indices: 74851047--74851190 Score: 114
Period size: 46 Copynumber: 3.1 Consensus size: 44
74851037 CCCGCCCATA
* *
74851047 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGT-TACATTT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA-TAT-C--CT
** * *
74851094 AACGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC--ATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCATATCC-T
*
74851139 AAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC--ATATCCT
74851186 AGTGA
1 AGTGA
74851191 CATGTCACTT
Statistics
Matches: 77, Mismatches: 11, Indels: 19
0.72 0.10 0.18
Matches are distributed among these distances:
44 4 0.05
45 1 0.01
46 34 0.44
47 31 0.40
48 4 0.05
49 3 0.04
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.23
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATATCCT
Found at i:74853607 original size:30 final size:30
Alignment explanation
Indices: 74853562--74853650 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
74853552 CAAAGATAAT
74853562 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
74853591 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
74853621 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
74853651 TGATATTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:74853610 original size:15 final size:15
Alignment explanation
Indices: 74853562--74853641 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
74853552 CAAAGATAAT
*
74853562 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
74853576 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
74853591 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
74853606 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
74853621 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
74853636 AAGAAA
1 AAGAAA
74853642 CCCAAGATAT
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:74853650 original size:15 final size:15
Alignment explanation
Indices: 74853573--74853650 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
74853563 AGAAAACCGA
74853573 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
74853588 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
74853602 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
74853617 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
74853633 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
74853648 ATA
1 ATA
74853651 TGATATTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:74856707 original size:93 final size:93
Alignment explanation
Indices: 74856599--74856767 Score: 275
Period size: 93 Copynumber: 1.8 Consensus size: 93
74856589 GCCCATAAGT
* * *
74856599 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACACGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACACAGACTCAACTCAA
74856664 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* * * *
74856692 GAACTCGTACTCAACTCAATGAGTTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACACAGACTCAACTCAA
74856757 CGAGTTCGGAT
66 CGAGTTCGGAT
74856768 ACCCAAATAT
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACACAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:74856762 original size:46 final size:46
Alignment explanation
Indices: 74856591--74856766 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
74856581 TGTAACCCGC
* * *
74856591 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
74856637 CCATAAGTGAACACGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* * * * *
74856687 --TTCA-CGAACTCGTACTCAACTCAATGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
74856730 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
74856767 TACCCAAATA
Statistics
Matches: 103, Mismatches: 18, Indels: 18
0.74 0.13 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 60 0.58
47 26 0.25
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:74864681 original size:29 final size:29
Alignment explanation
Indices: 74864636--74864694 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
74864626 GCAGTAAAGC
*
74864636 CCAATAAACCTTTGGCTTAACTTGCCTTA
1 CCAATAAACCTTGGGCTTAACTTGCCTTA
74864665 CCAATAAACCTTGGGCTTAACTTGCCTTA
1 CCAATAAACCTTGGGCTTAACTTGCCTTA
74864694 C
1 C
74864695 GCTCAAATAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.32
Consensus pattern (29 bp):
CCAATAAACCTTGGGCTTAACTTGCCTTA
Found at i:74879520 original size:33 final size:34
Alignment explanation
Indices: 74879440--74879520 Score: 80
Period size: 33 Copynumber: 2.4 Consensus size: 34
74879430 GTCTCAGTTA
* * *
74879440 GGGCCTTAGCCCATTTTAGTAACAGTAATAGTCT
1 GGGCCTAAGCCCATTTCAGTAACAGTAATAGTCG
*
74879474 GGGCC-AGAG-CCATTTCAGTAGCAGT-ATCAGT-G
1 GGGCCTA-AGCCCATTTCAGTAACAGTAAT-AGTCG
74879506 GGGCCTAAGCCCATT
1 GGGCCTAAGCCCATT
74879521 ATAGTATTAG
Statistics
Matches: 39, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
32 9 0.23
33 23 0.59
34 7 0.18
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (34 bp):
GGGCCTAAGCCCATTTCAGTAACAGTAATAGTCG
Found at i:74887847 original size:23 final size:22
Alignment explanation
Indices: 74887752--74887864 Score: 84
Period size: 23 Copynumber: 4.9 Consensus size: 22
74887742 AATTCGCAAT
* *
74887752 AGCTTACCATTTTCAGCTTACTGG
1 AGCTTACTA-TTTCAGCTTA-TAG
** * *
74887776 AGCTTACCGTTTCAACTCAATAG
1 AGCTTACTATTTCAGCT-TATAG
* *
74887799 AGCTTACTA-TTCAGCTCGATAA
1 AGCTTACTATTTCAGCT-TATAG
74887821 AGCTTACTATTTCAGCTTATTAG
1 AGCTTACTATTTCAGCTTA-TAG
74887844 AGCTTACTATTCATCAGCTTA
1 AGCTTACTATT--TCAGCTTA
74887865 GGAGGAGCTT
Statistics
Matches: 73, Mismatches: 11, Indels: 9
0.78 0.12 0.10
Matches are distributed among these distances:
22 20 0.27
23 36 0.49
24 9 0.12
25 8 0.11
ACGTcount: A:0.27, C:0.23, G:0.13, T:0.36
Consensus pattern (22 bp):
AGCTTACTATTTCAGCTTATAG
Found at i:74893149 original size:55 final size:54
Alignment explanation
Indices: 74893062--74893316 Score: 260
Period size: 55 Copynumber: 4.8 Consensus size: 54
74893052 ATTAAGGTTT
* *
74893062 AAGGATACCATGTAAGAGCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAA-GTTTCTAAGGC
* * * * *
74893117 AAGGAAATCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTT--TCTAAGGC
* * *
74893172 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTC-TAAGGC
*
74893225 AAGGATACCATGTAAGACCATGTCAAGACATGGCAA-TGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
* * * *
74893274 AAGGATACCACGTAAGACCATGACAAGTCATGG-AAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAG
74893317 GTACCCGCAT
Statistics
Matches: 170, Mismatches: 22, Indels: 22
0.79 0.10 0.10
Matches are distributed among these distances:
48 2 0.01
49 37 0.22
52 7 0.04
53 41 0.24
54 12 0.07
55 67 0.39
56 4 0.02
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
Found at i:74893268 original size:108 final size:110
Alignment explanation
Indices: 74893069--74893269 Score: 318
Period size: 108 Copynumber: 1.8 Consensus size: 110
74893059 TTTAAGGATA
* *
74893069 CCATGTAAGAGCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
*
74893134 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* *
74893179 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
74893241 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
74893270 TCAAAAGGAT
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
107 3 0.04
108 48 0.57
109 7 0.08
110 26 0.31
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.22
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:74893534 original size:16 final size:16
Alignment explanation
Indices: 74893513--74893543 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
74893503 ATAAATTTGA
74893513 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
74893529 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
74893544 AGTTAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:74895253 original size:104 final size:103
Alignment explanation
Indices: 74895018--74895386 Score: 591
Period size: 104 Copynumber: 3.6 Consensus size: 103
74895008 TAGCCGTTAT
** *
74895018 TGGTGGATCCCGCACTTAGCACCACCACTGAATC-GGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
*
74895082 AATCAGCACATAGCAACCCCCTTTTTATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTTCATTTCAAAGATA
74895120 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
74895185 AATCAGCACATAGCAACCCCCCTTTTCATTTCAAAGATA
66 AATCAGCACATAGCAA-CCCCCTTTTCATTTCAAAGATA
74895224 TGGTGGATATCGCACTTAGCACCACCAATGAAATCGGGGAATCAGCACTTAGCAACCCCTC-GGG
1 TGGTGGATATCGCACTTAGCACCACCAATG-AATCGGGGAATCAGCACTTAGCAACCCCTCGGGG
*
74895288 GAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
65 GAATCAGCACATAGCAACCCCCTTT-TCATTTCAAAGATA
* * * **
74895328 TGGTGGATCA-CGCACATAGCACCACCCATAAATCGGGGAATCAGCACACAGCAACCCCT
1 TGGTGGAT-ATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
74895387 TTTATATACA
Statistics
Matches: 252, Mismatches: 10, Indels: 9
0.93 0.04 0.03
Matches are distributed among these distances:
102 31 0.12
103 81 0.32
104 109 0.43
105 31 0.12
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (103 bp):
TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
AATCAGCACATAGCAACCCCCTTTTCATTTCAAAGATA
Found at i:74895286 original size:26 final size:26
Alignment explanation
Indices: 74895257--74895308 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
74895247 ACCAATGAAA
*
74895257 TCGGGGAATCAGCACTTAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
74895283 TCGGGGAATCAGCACATAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
74895309 CTTTCACATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.35, G:0.23, T:0.13
Consensus pattern (26 bp):
TCGGGGAATCAGCACATAGCAACCCC
Found at i:74895748 original size:29 final size:30
Alignment explanation
Indices: 74895722--74895778 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
74895712 CCACCCAACT
74895722 TTTTG-AAAATTACAATTTTGCCCCCAAAA
1 TTTTGCAAAATTACAATTTTGCCCCCAAAA
* * *
74895751 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
74895779 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.32, C:0.23, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAA
Found at i:74924495 original size:22 final size:23
Alignment explanation
Indices: 74924425--74924514 Score: 92
Period size: 23 Copynumber: 3.9 Consensus size: 23
74924415 TCAGATCGTA
* * *
74924425 AGAGCTTACTTTTTTTAGCTCACT
1 AGAGCTTAC-TGTTTCAGCTCAAT
* *
74924449 GGAGCTTACCGTTTCAGCTCAAT
1 AGAGCTTACTGTTTCAGCTCAAT
**
74924472 AGAGCTTACTGTTT-AGCTTGAT
1 AGAGCTTACTGTTTCAGCTCAAT
*
74924494 AGAGCTTATTGTTTCAGCTCA
1 AGAGCTTACTGTTTCAGCTCA
74924515 TTTAAGCTTA
Statistics
Matches: 53, Mismatches: 12, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
22 19 0.36
23 26 0.49
24 8 0.15
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (23 bp):
AGAGCTTACTGTTTCAGCTCAAT
Found at i:74925467 original size:30 final size:30
Alignment explanation
Indices: 74925433--74925498 Score: 123
Period size: 30 Copynumber: 2.2 Consensus size: 30
74925423 ACGGGCAGAG
74925433 ACACGGGCATGTGTCTCAGCCATGTGTGAC
1 ACACGGGCATGTGTCTCAGCCATGTGTGAC
*
74925463 ACACGGGCATGTGTCTCAGCCGTGTGTGAC
1 ACACGGGCATGTGTCTCAGCCATGTGTGAC
74925493 ACACGG
1 ACACGG
74925499 TTATGTTACA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.20, C:0.27, G:0.32, T:0.21
Consensus pattern (30 bp):
ACACGGGCATGTGTCTCAGCCATGTGTGAC
Found at i:74928032 original size:43 final size:41
Alignment explanation
Indices: 74927979--74928098 Score: 109
Period size: 43 Copynumber: 2.9 Consensus size: 41
74927969 GTCTGAGACA
* * *
74927979 TCGTGTAAGACCGTGTTTGGGACACAGGCATCGAT-TGAGATT
1 TCGTATAAGACCATGTATGGGACACAGGCATCGATCT--GATT
74928021 TACGTATAAGACCATGTATGGGACATC-GGCATCGTATCTGATT
1 T-CGTATAAGACCATGTATGGGACA-CAGGCATCG-ATCTGATT
* * * * *
74928064 TCGTGTAAGACCCTATCTGGGACAGAGGCATCGAT
1 TCGTATAAGACCATGTATGGGACACAGGCATCGAT
74928099 ATTGAATTAC
Statistics
Matches: 65, Mismatches: 8, Indels: 11
0.77 0.10 0.13
Matches are distributed among these distances:
41 2 0.03
42 27 0.42
43 32 0.49
44 3 0.05
45 1 0.02
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.28
Consensus pattern (41 bp):
TCGTATAAGACCATGTATGGGACACAGGCATCGATCTGATT
Found at i:74951485 original size:29 final size:29
Alignment explanation
Indices: 74951443--74951499 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
74951433 TTCTATGATT
*
74951443 GAACCAGAAGCATAATTATAATAGACATC
1 GAACCAAAAGCATAATTATAATAGACATC
74951472 GAACCAAAAGCATAATTATAATAGACAT
1 GAACCAAAAGCATAATTATAATAGACAT
74951500 AGTTCTAAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.51, C:0.16, G:0.12, T:0.21
Consensus pattern (29 bp):
GAACCAAAAGCATAATTATAATAGACATC
Found at i:74954545 original size:26 final size:26
Alignment explanation
Indices: 74954515--74954566 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
74954505 AAATCCCATG
74954515 CTTACCACTTACTCATTCATAATGCT
1 CTTACCACTTACTCATTCATAATGCT
*
74954541 CTTACCACTTATTCATTCATAATGCT
1 CTTACCACTTACTCATTCATAATGCT
74954567 TACTCTTTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.04, T:0.40
Consensus pattern (26 bp):
CTTACCACTTACTCATTCATAATGCT
Found at i:74955811 original size:13 final size:13
Alignment explanation
Indices: 74955793--74955817 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
74955783 GTAAGTAATT
74955793 TTGATGATTTTTC
1 TTGATGATTTTTC
74955806 TTGATGATTTTT
1 TTGATGATTTTT
74955818 ACATTTTTAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.04, G:0.16, T:0.64
Consensus pattern (13 bp):
TTGATGATTTTTC
Found at i:74966885 original size:106 final size:106
Alignment explanation
Indices: 74966695--74966894 Score: 235
Period size: 106 Copynumber: 1.9 Consensus size: 106
74966685 TAATATAAAC
* * * ** * *
74966695 TACATGCTTTAACATTTCACGCAATTATAATATAGAAAATGATGAATAACGACATAAATTATATA
1 TACATGCATTAACATTTCACGCAAATATAACATAGAAAACAATGAATAACAACATAAATTACATA
* *
74966760 GTATACATTAACCTTTCATGCAGATATAAATGACATAAATA
66 GTATACATTAACATTTCATGCAAATATAAATGACATAAATA
* * *
74966801 TACATGCATTAATATTTCATGCAAAATATAACATAGAAAACAATGAATATAACAACATGAATTAC
1 TACATGCATTAACATTTCACGC-AAATATAACATAGAAAACAATG-A-ATAACAACATAAATTAC
*
74966866 ATA-TATA-A-TAATATTTCATGCAAATATAA
63 ATAGTATACATTAACATTTCATGCAAATATAA
74966895 CTTAAAATAA
Statistics
Matches: 78, Mismatches: 13, Indels: 6
0.80 0.13 0.06
Matches are distributed among these distances:
106 37 0.47
107 19 0.24
108 5 0.06
109 17 0.22
ACGTcount: A:0.48, C:0.12, G:0.08, T:0.32
Consensus pattern (106 bp):
TACATGCATTAACATTTCACGCAAATATAACATAGAAAACAATGAATAACAACATAAATTACATA
GTATACATTAACATTTCATGCAAATATAAATGACATAAATA
Found at i:74967036 original size:12 final size:12
Alignment explanation
Indices: 74967008--74967046 Score: 64
Period size: 12 Copynumber: 3.4 Consensus size: 12
74966998 AAAACAATAC
74967008 CAAATAAAT-AA
1 CAAATAAATAAA
74967019 -AAATAAATAAA
1 CAAATAAATAAA
74967030 CAAATAAATAAA
1 CAAATAAATAAA
74967042 CAAAT
1 CAAAT
74967047 TATATACATA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
10 8 0.31
11 2 0.08
12 16 0.62
ACGTcount: A:0.74, C:0.08, G:0.00, T:0.18
Consensus pattern (12 bp):
CAAATAAATAAA
Found at i:74967104 original size:13 final size:13
Alignment explanation
Indices: 74967009--74967107 Score: 56
Period size: 13 Copynumber: 7.0 Consensus size: 13
74966999 AAACAATACC
*
74967009 AAATAAATAAAAAT
1 AAATAAA-AAATAT
*
74967023 AAATAAACAA-AT
1 AAATAAAAAATAT
74967035 AAATAAACAAATTAT
1 AAATAAA-AAA-TAT
74967050 ATACATATATAAAATAT
1 A-A-ATA-A-AAAATAT
* *
74967067 AAGTCAAAAAAATAA
1 AAAT--AAAAAATAT
*
74967082 AAATAGAAAATAT
1 AAATAAAAAATAT
*
74967095 AACTAAAAAATAT
1 AAATAAAAAATAT
74967108 TTAAAATAAT
Statistics
Matches: 67, Mismatches: 9, Indels: 19
0.71 0.09 0.20
Matches are distributed among these distances:
12 9 0.13
13 22 0.33
14 7 0.10
15 13 0.19
16 3 0.04
17 8 0.12
18 4 0.06
19 1 0.01
ACGTcount: A:0.70, C:0.05, G:0.02, T:0.23
Consensus pattern (13 bp):
AAATAAAAAATAT
Found at i:74967167 original size:20 final size:19
Alignment explanation
Indices: 74967142--74967204 Score: 67
Period size: 20 Copynumber: 3.3 Consensus size: 19
74967132 GGAAAATTTT
74967142 TAAAACGATTAATATATATA
1 TAAAAC-ATTAATATATATA
*
74967162 TAAAACA-TACTATATGATA
1 TAAAACATTAATATAT-ATA
*
74967181 TAATAAC-TTAATATATTTA
1 TAA-AACATTAATATATATA
74967200 TAAAA
1 TAAAA
74967205 ATAATAATAT
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
18 9 0.24
19 12 0.32
20 16 0.43
ACGTcount: A:0.54, C:0.06, G:0.03, T:0.37
Consensus pattern (19 bp):
TAAAACATTAATATATATA
Found at i:74967408 original size:12 final size:12
Alignment explanation
Indices: 74967393--74967419 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
74967383 TGGGAGTAAT
74967393 ATATATAATAAA
1 ATATATAATAAA
74967405 ATATATAATAAA
1 ATATATAATAAA
74967417 ATA
1 ATA
74967420 CAAATAACCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
ATATATAATAAA
Found at i:74967482 original size:19 final size:19
Alignment explanation
Indices: 74967460--74967497 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
74967450 TTTTACATGT
* *
74967460 ATAAATAATGTTTATAAAA
1 ATAAATAATATATATAAAA
74967479 ATAAATAATATATATAAAA
1 ATAAATAATATATATAAAA
74967498 TATTTAAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (19 bp):
ATAAATAATATATATAAAA
Found at i:74980794 original size:4 final size:4
Alignment explanation
Indices: 74980785--74980819 Score: 56
Period size: 4 Copynumber: 9.2 Consensus size: 4
74980775 AAACAATACC
74980785 AAAT AAAT -AA- AAAT AAAT AAAT AAAT AAAT AAAT A
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT A
74980820 TAAACATATA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
3 4 0.14
4 25 0.86
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:74980800 original size:10 final size:10
Alignment explanation
Indices: 74980785--74980893 Score: 54
Period size: 8 Copynumber: 11.3 Consensus size: 10
74980775 AAACAATACC
74980785 AAATAAATAA
1 AAATAAATAA
74980795 AAATAAAT--
1 AAATAAATAA
74980803 AAATAAAT--
1 AAATAAATAA
74980811 AAATAAATATA
1 AAATAAATA-A
*
74980822 AACATATATAA
1 AA-ATAAATAA
* *
74980833 AATATAAGT-C
1 AA-ATAAATAA
74980843 AAA-AAATAA
1 AAATAAATAA
*
74980852 AAATAGA-AA
1 AAATAAATAA
* *
74980861 ATATAATTAA
1 AAATAAATAA
* *
74980871 AAAT-ATTTA
1 AAATAAATAA
74980880 AAATAATATAA
1 AAATAA-ATAA
74980891 AAA
1 AAA
74980894 ATGATAAAGG
Statistics
Matches: 75, Mismatches: 15, Indels: 17
0.70 0.14 0.16
Matches are distributed among these distances:
8 19 0.25
9 18 0.24
10 18 0.24
11 14 0.19
12 6 0.08
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.26
Consensus pattern (10 bp):
AAATAAATAA
Found at i:74980808 original size:18 final size:18
Alignment explanation
Indices: 74980785--74980875 Score: 60
Period size: 19 Copynumber: 4.8 Consensus size: 18
74980775 AAACAATACC
74980785 AAATAAATAAAAATA-AA
1 AAATAAATAAAAATAGAA
*
74980802 TAAATAAATAAATAAATATAA
1 -AAATAAAT-AA-AAATAGAA
* * **
74980823 ACATATATAAAATATAAGTC
1 AAATAAATAAAA-AT-AGAA
74980843 AAA-AAATAAAAATAGAA
1 AAATAAATAAAAATAGAA
*
74980860 AATATAATTAAAAATA
1 AA-ATAAATAAAAATA
74980876 TTTAAAATAA
Statistics
Matches: 56, Mismatches: 10, Indels: 13
0.71 0.13 0.16
Matches are distributed among these distances:
17 4 0.07
18 13 0.23
19 23 0.41
20 14 0.25
21 2 0.04
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.24
Consensus pattern (18 bp):
AAATAAATAAAAATAGAA
Found at i:74980875 original size:12 final size:12
Alignment explanation
Indices: 74980787--74980876 Score: 58
Period size: 12 Copynumber: 7.2 Consensus size: 12
74980777 ACAATACCAA
74980787 ATAAATAAAAAT
1 ATAAATAAAAAT
74980799 AAATAAATAAATAA-
1 --ATAAATAAA-AAT
* *
74980813 ATAAATATAAAC
1 ATAAATAAAAAT
*
74980825 ATATAT-AAAAT
1 ATAAATAAAAAT
*
74980836 ATAAGTCAAAAAAT
1 ATAAAT--AAAAAT
*
74980850 AAAAATAGAAAAT
1 ATAAATA-AAAAT
*
74980863 ATAATTAAAAAT
1 ATAAATAAAAAT
74980875 AT
1 AT
74980877 TTAAAATAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 14
0.71 0.12 0.17
Matches are distributed among these distances:
11 9 0.15
12 21 0.35
13 10 0.17
14 18 0.30
15 2 0.03
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.26
Consensus pattern (12 bp):
ATAAATAAAAAT
Found at i:74980961 original size:20 final size:21
Alignment explanation
Indices: 74980923--74980962 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
74980913 AAAACGATTA
*
74980923 ATATATATAACATACTATATG
1 ATATATATAACATAATATATG
*
74980944 ATATA-ATAACTTAATATAT
1 ATATATATAACATAATATAT
74980963 TTATAAAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.50, C:0.07, G:0.03, T:0.40
Consensus pattern (21 bp):
ATATATATAACATAATATATG
Found at i:74981248 original size:19 final size:19
Alignment explanation
Indices: 74981226--74981263 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
74981216 TTTTACATGT
* *
74981226 ATAAATAATGTTTATAAAA
1 ATAAATAATATATATAAAA
74981245 ATAAATAATATATATAAAA
1 ATAAATAATATATATAAAA
74981264 TATTTAAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (19 bp):
ATAAATAATATATATAAAA
Found at i:74992718 original size:20 final size:20
Alignment explanation
Indices: 74992693--74992730 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
74992683 GTCACATATA
74992693 TCATGAACTCAGACCACAAC
1 TCATGAACTCAGACCACAAC
* *
74992713 TCATGAGCTCAGATCACA
1 TCATGAACTCAGACCACA
74992731 TAATTCCTAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.32, G:0.13, T:0.18
Consensus pattern (20 bp):
TCATGAACTCAGACCACAAC
Found at i:74992857 original size:25 final size:25
Alignment explanation
Indices: 74992829--74992877 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
74992819 CCAGAGGACC
*
74992829 AATCACATAACTCATGATAATGATT
1 AATCACATAACTCATCATAATGATT
* *
74992854 AATCACATAATTCTTCATAATGAT
1 AATCACATAACTCATCATAATGAT
74992878 AATAATAAAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.43, C:0.16, G:0.06, T:0.35
Consensus pattern (25 bp):
AATCACATAACTCATCATAATGATT
Found at i:74994709 original size:6 final size:6
Alignment explanation
Indices: 74994693--74994727 Score: 52
Period size: 6 Copynumber: 5.7 Consensus size: 6
74994683 CAAATGAATT
*
74994693 ATTTCTC ATTTTC ATTTTC ATTTTC ATTTCC ATTT
1 ATTT-TC ATTTTC ATTTTC ATTTTC ATTTTC ATTT
74994728 CTATTTTGAG
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
6 23 0.85
7 4 0.15
ACGTcount: A:0.17, C:0.20, G:0.00, T:0.63
Consensus pattern (6 bp):
ATTTTC
Found at i:74994733 original size:18 final size:17
Alignment explanation
Indices: 74994691--74994734 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 17
74994681 TGCAAATGAA
*
74994691 TTATTTCTCATTTTCATT
1 TTATTT-TCATTTCCATT
74994709 TTCATTTTCATTTCCATT
1 TT-ATTTTCATTTCCATT
74994727 TCTATTTT
1 T-TATTTT
74994735 GAGAAAACCA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
18 18 0.78
19 5 0.22
ACGTcount: A:0.16, C:0.18, G:0.00, T:0.66
Consensus pattern (17 bp):
TTATTTTCATTTCCATT
Found at i:74996646 original size:21 final size:21
Alignment explanation
Indices: 74996617--74996657 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
74996607 CCTATTAGGT
* *
74996617 TTCCGTTCAGCTCTTATGAGC
1 TTCCGTTCAACCCTTATGAGC
*
74996638 TTCCTTTCAACCCTTATGAG
1 TTCCGTTCAACCCTTATGAG
74996658 TTTTCATTTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.17, C:0.29, G:0.15, T:0.39
Consensus pattern (21 bp):
TTCCGTTCAACCCTTATGAGC
Found at i:75006256 original size:18 final size:19
Alignment explanation
Indices: 75006233--75006270 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
75006223 GAAATGAAAA
75006233 AGATGAAAAAAGA-ATATG
1 AGATGAAAAAAGAGATATG
* *
75006251 AGATGAGAAATGAGATATG
1 AGATGAAAAAAGAGATATG
75006270 A
1 A
75006271 AAAGATGAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.55, C:0.00, G:0.26, T:0.18
Consensus pattern (19 bp):
AGATGAAAAAAGAGATATG
Found at i:75008660 original size:68 final size:66
Alignment explanation
Indices: 75008447--75008698 Score: 198
Period size: 68 Copynumber: 3.8 Consensus size: 66
75008437 ATAATTTTGT
* * * *
75008447 CTCTCTTGTAC-ACATGGTGAACACTTAGTACCACCCATGTGACCTAGC--CAGTTTA-TCTCGT
1 CTCTCTTGTACTACATGGTGTACACATAGTACCACCCATGCGACCTAGCTACA-TATATTCTCGT
75008508 AG
65 AG
* * * ** *
75008510 CTCTCTTGT-CTACATGGTGTCCTTCACCTAGAACCATGCATGCGACCTAGCTACATATA-TCCC
1 CTCTCTTGTACTACATGGTG---TACACATAGTACCACCCATGCGACCTAGCTACATATATTCTC
75008573 GTAG
63 GTAG
* * *
75008577 CTCTCTTG-CCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACATCATAATGTCTT
1 CTCTCTTGTACTACATGGTGTACACATAGTACCACCCATGCGACCTAGCTACAT-AT-AT-TCTC
75008641 GTAG
63 GTAG
* * * ** *
75008645 CTCTCTTGTAC-ACATGATGTGCAC-TCAGCACCATACATGTGACCTAGCTACATA
1 CTCTCTTGTACTACATGGTGTACACAT-AGTACCACCCATGCGACCTAGCTACATA
75008699 CCATCTGTAT
Statistics
Matches: 151, Mismatches: 25, Indels: 22
0.76 0.13 0.11
Matches are distributed among these distances:
62 1 0.01
63 17 0.11
64 28 0.19
65 2 0.01
66 23 0.15
67 30 0.20
68 49 0.32
69 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.30
Consensus pattern (66 bp):
CTCTCTTGTACTACATGGTGTACACATAGTACCACCCATGCGACCTAGCTACATATATTCTCGTA
G
Found at i:75010884 original size:49 final size:49
Alignment explanation
Indices: 75010779--75010887 Score: 139
Period size: 49 Copynumber: 2.2 Consensus size: 49
75010769 TCTAGCATTC
* *
75010779 TAGAAATG-ATAAATAGTGATAAAAGTGTAGAAAATGGAAAACTAAGTT
1 TAGAAATGTATAAATAGTGATAAAAGTGTAGAAAATGGAAAACCAAGTA
* * * * * *
75010827 TAGCAATGTATAAATAGTGATAAGAGTGTAGACAGTGTAAGACCAAGTA
1 TAGAAATGTATAAATAGTGATAAAAGTGTAGAAAATGGAAAACCAAGTA
75010876 TAGAAATGTATA
1 TAGAAATGTATA
75010888 GCATAATTTA
Statistics
Matches: 51, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
48 7 0.14
49 44 0.86
ACGTcount: A:0.48, C:0.05, G:0.22, T:0.26
Consensus pattern (49 bp):
TAGAAATGTATAAATAGTGATAAAAGTGTAGAAAATGGAAAACCAAGTA
Found at i:75025135 original size:37 final size:37
Alignment explanation
Indices: 75025085--75025163 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
75025075 TTATTACGAA
* * * *
75025085 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCAG
*
75025122 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCAG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCAG
75025159 GTCTT
1 GTCTT
75025164 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCAG
Found at i:75025360 original size:47 final size:47
Alignment explanation
Indices: 75025282--75025810 Score: 898
Period size: 47 Copynumber: 11.1 Consensus size: 47
75025272 CCCTTCGGGA
* * * * * *
75025282 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
75025329 CCTGTCACATATATACACTTCCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75025376 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75025423 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
75025470 CCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75025517 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75025564 C-TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
75025612 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATAAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75025661 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75025708 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75025757 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75025804 CTTATCA
1 CTTATCA
75025811 TCATTTCATA
Statistics
Matches: 461, Mismatches: 16, Indels: 10
0.95 0.03 0.02
Matches are distributed among these distances:
46 6 0.01
47 314 0.68
48 40 0.09
49 101 0.22
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.31
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:75036314 original size:14 final size:13
Alignment explanation
Indices: 75036295--75036330 Score: 54
Period size: 14 Copynumber: 2.7 Consensus size: 13
75036285 AAAGACATGC
75036295 AAAAGAAAGAAAGA
1 AAAAGAAAGAAA-A
75036309 AAAAGAAAGAAAA
1 AAAAGAAAGAAAA
*
75036322 AAGAGAAAG
1 AAAAGAAAG
75036331 TCACGCACCG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
13 9 0.43
14 12 0.57
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (13 bp):
AAAAGAAAGAAAA
Found at i:75044006 original size:20 final size:20
Alignment explanation
Indices: 75043953--75044007 Score: 53
Period size: 20 Copynumber: 2.8 Consensus size: 20
75043943 TTGTACAAGT
75043953 TTGCATTTCAGTGCCTCTAA
1 TTGCATTTCAGTGCCTCTAA
*
75043973 TTGTACA-TTC-GTGCCTCT-G
1 TTG--CATTTCAGTGCCTCTAA
75043992 TCTGCATTTCAGTGCC
1 T-TGCATTTCAGTGCC
75044008 CCTATTGCGC
Statistics
Matches: 29, Mismatches: 1, Indels: 10
0.73 0.03 0.25
Matches are distributed among these distances:
18 2 0.07
19 4 0.14
20 18 0.62
21 3 0.10
22 2 0.07
ACGTcount: A:0.15, C:0.27, G:0.18, T:0.40
Consensus pattern (20 bp):
TTGCATTTCAGTGCCTCTAA
Found at i:75051583 original size:12 final size:12
Alignment explanation
Indices: 75051550--75051580 Score: 53
Period size: 12 Copynumber: 2.5 Consensus size: 12
75051540 TTTCATTTAA
75051550 AAAAATTAAAAC
1 AAAAATTAAAAC
75051562 AAAAATTAAAAC
1 AAAAATTAAAAC
75051574 AAGAAAT
1 AA-AAAT
75051581 AAATAAACTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 14 0.78
13 4 0.22
ACGTcount: A:0.74, C:0.06, G:0.03, T:0.16
Consensus pattern (12 bp):
AAAAATTAAAAC
Found at i:75060671 original size:16 final size:17
Alignment explanation
Indices: 75060659--75060691 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
75060649 CTATTAATCA
75060659 TACT-AATTTTTAATAG
1 TACTAAATTTTTAATAG
75060675 TACTAAAATTTTTAATA
1 TACT-AAATTTTTAATA
75060692 AAAAATTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
18 11 0.73
ACGTcount: A:0.42, C:0.06, G:0.03, T:0.48
Consensus pattern (17 bp):
TACTAAATTTTTAATAG
Found at i:75060712 original size:21 final size:20
Alignment explanation
Indices: 75060683--75060723 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
75060673 AGTACTAAAA
*
75060683 TTTTTAATAAAAAATTTAAT
1 TTTTTAATAAAAAATATAAT
*
75060703 TTTTTAAATATAAAATATAAT
1 TTTTT-AATAAAAAATATAAT
75060724 AATTAATTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (20 bp):
TTTTTAATAAAAAATATAAT
Found at i:75062831 original size:21 final size:21
Alignment explanation
Indices: 75062807--75062846 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
75062797 AGACCTTCCG
75062807 AAGGGTTTAAGTAAAATTTCT
1 AAGGGTTTAAGTAAAATTTCT
75062828 AAGGGTTTAAGTAAAATTT
1 AAGGGTTTAAGTAAAATTT
75062847 GAGAGGATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.40, C:0.03, G:0.20, T:0.38
Consensus pattern (21 bp):
AAGGGTTTAAGTAAAATTTCT
Found at i:75062857 original size:21 final size:21
Alignment explanation
Indices: 75062805--75062864 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 21
75062795 AAAGACCTTC
*
75062805 CGAAGGGTTTAAGTAAAATTT
1 CGAAGGATTTAAGTAAAATTT
* *
75062826 CTAAGGGTTTAAGTAAAATTT
1 CGAAGGATTTAAGTAAAATTT
*
75062847 -GAGAGGATTTAATTAAAA
1 CGA-AGGATTTAAGTAAAA
75062865 ATATTAAGTT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
20 1 0.03
21 33 0.97
ACGTcount: A:0.42, C:0.03, G:0.22, T:0.33
Consensus pattern (21 bp):
CGAAGGATTTAAGTAAAATTT
Found at i:75062962 original size:16 final size:15
Alignment explanation
Indices: 75062937--75062978 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 15
75062927 GATTTGAACA
75062937 TTTA-ATTTATAATAT
1 TTTATATTTATAAT-T
*
75062952 TTTATATTTATTATT
1 TTTATATTTATAATT
75062967 TTTATATATTAT
1 TTTATAT-TTAT
75062979 TTAATTTAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
15 12 0.50
16 12 0.50
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (15 bp):
TTTATATTTATAATT
Found at i:75067126 original size:11 final size:11
Alignment explanation
Indices: 75067110--75067135 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
75067100 CTAGCATGTC
75067110 AATTTTATTAA
1 AATTTTATTAA
75067121 AATTTTATTAA
1 AATTTTATTAA
75067132 AATT
1 AATT
75067136 ATTTGAGTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (11 bp):
AATTTTATTAA
Found at i:75068492 original size:20 final size:18
Alignment explanation
Indices: 75068464--75068505 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 18
75068454 AGATAGTATA
75068464 ATATCAAATTATGTATTTGT
1 ATATCAAA-TATGT-TTTGT
*
75068484 ATATGAAATATGTTTTGT
1 ATATCAAATATGTTTTGT
75068502 ATAT
1 ATAT
75068506 ATATATAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 9 0.43
19 5 0.24
20 7 0.33
ACGTcount: A:0.36, C:0.02, G:0.12, T:0.50
Consensus pattern (18 bp):
ATATCAAATATGTTTTGT
Found at i:75069677 original size:20 final size:20
Alignment explanation
Indices: 75069652--75069689 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
75069642 GGGAACAATT
*
75069652 TTTCAATTGATTTAAAAATG
1 TTTCAATTGAGTTAAAAATG
75069672 TTTCAATTGAGTTAAAAA
1 TTTCAATTGAGTTAAAAA
75069690 AAAAGTTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.42, C:0.05, G:0.11, T:0.42
Consensus pattern (20 bp):
TTTCAATTGAGTTAAAAATG
Found at i:75069748 original size:21 final size:20
Alignment explanation
Indices: 75069720--75069759 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
75069710 AACTTTGTCC
75069720 AAACTTTTTATAA-ATGTTTA
1 AAACTTTTT-TAAGATGTTTA
75069740 AAACATTTTTTAAGATGTTT
1 AAAC-TTTTTTAAGATGTTT
75069760 GGAAGTCTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.38, C:0.05, G:0.07, T:0.50
Consensus pattern (20 bp):
AAACTTTTTTAAGATGTTTA
Found at i:75070170 original size:3 final size:3
Alignment explanation
Indices: 75070162--75070194 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
75070152 TTGGTGTGAG
75070162 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
75070195 GCATGTTTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:75070544 original size:28 final size:28
Alignment explanation
Indices: 75070511--75070566 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
75070501 GAAATATCCT
75070511 GACAAGAATGTCCCCAATTTTTGTTACA
1 GACAAGAATGTCCCCAATTTTTGTTACA
75070539 GACAAGAATGTCCCCAATTTTTGTTACA
1 GACAAGAATGTCCCCAATTTTTGTTACA
75070567 TGAAAATTAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.32, C:0.21, G:0.14, T:0.32
Consensus pattern (28 bp):
GACAAGAATGTCCCCAATTTTTGTTACA
Found at i:75079537 original size:42 final size:42
Alignment explanation
Indices: 75079424--75079585 Score: 139
Period size: 43 Copynumber: 3.8 Consensus size: 42
75079414 CATAAAGTTC
* * ***
75079424 ATACAATGCCAATGTCCCAGACATGGTCTTACAGGTAATCAA
1 ATACGATGCCAATGTCCCAGACGTGGTCTTACACAAAATCAA
* * *
75079466 ATATCGATGCCATTGTCCTAAACAG-GGTCTTACACAAAATCAA
1 ATA-CGATGCCAATGTCCCAGAC-GTGGTCTTACACAAAATCAA
* *
75079509 ATACGATGCCAATGCCCCAGACGTGGTCTTACACGTAAATACCAA
1 ATACGATGCCAATGTCCCAGACGTGGTCTTACAC--AAA-ATCAA
* * * *
75079554 AT-TGATGCCAACGTACCAGACATGGTCTTACA
1 ATACGATGCCAATGTCCCAGACGTGGTCTTACA
75079586 TGATATCACA
Statistics
Matches: 96, Mismatches: 18, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
41 1 0.01
42 28 0.29
43 33 0.34
44 28 0.29
45 6 0.06
ACGTcount: A:0.35, C:0.25, G:0.17, T:0.23
Consensus pattern (42 bp):
ATACGATGCCAATGTCCCAGACGTGGTCTTACACAAAATCAA
Found at i:75092904 original size:13 final size:13
Alignment explanation
Indices: 75092886--75092910 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
75092876 CGACCGTGTG
75092886 ACACACACGAGCA
1 ACACACACGAGCA
75092899 ACACACACGAGC
1 ACACACACGAGC
75092911 GTGTGCCCTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.40, G:0.16, T:0.00
Consensus pattern (13 bp):
ACACACACGAGCA
Found at i:75097664 original size:28 final size:28
Alignment explanation
Indices: 75097632--75097746 Score: 115
Period size: 29 Copynumber: 4.0 Consensus size: 28
75097622 TACCTGTATC
* *
75097632 TGGCCCATTAAGCCCAATCATATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
* *
75097660 TGGCCCATTAGGACCAAATCAC-TTGTATA
1 TGGCCCATTAGG-CCCAATCACATT-CATA
* * *
75097689 TGACCCATTAGGCCCAAACCACATTTATA
1 TGGCCCATTAGGCCC-AATCACATTCATA
* *
75097718 TGGCCCGTTAGGCCCAGTCACATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
75097746 T
1 T
75097747 TCATGCTCAC
Statistics
Matches: 71, Mismatches: 12, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
28 26 0.37
29 43 0.61
30 2 0.03
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.27
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTCATA
Found at i:75097989 original size:24 final size:24
Alignment explanation
Indices: 75097961--75098007 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
75097951 CCAAACTTTC
75097961 AGCTTTTCGGCATTTCGACTTTTT
1 AGCTTTTCGGCATTTCGACTTTTT
*
75097985 AGCTTTTCGGCATTTCGGCTTTT
1 AGCTTTTCGGCATTTCGACTTTT
75098008 GCCGATACAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.11, C:0.21, G:0.19, T:0.49
Consensus pattern (24 bp):
AGCTTTTCGGCATTTCGACTTTTT
Found at i:75101920 original size:36 final size:37
Alignment explanation
Indices: 75101857--75101929 Score: 112
Period size: 36 Copynumber: 2.0 Consensus size: 37
75101847 ACCCTTATCC
**
75101857 GACAACAGAGATGGGTTAGGGTTGTTACAATTTTTTT
1 GACAACAGAGATGGGTTAGGGGCGTTACAATTTTTTT
*
75101894 GACAACGGAGAT-GGTTAGGGGCGTTACAATTTTTTT
1 GACAACAGAGATGGGTTAGGGGCGTTACAATTTTTTT
75101930 CTTTCATATT
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
36 22 0.67
37 11 0.33
ACGTcount: A:0.26, C:0.10, G:0.29, T:0.36
Consensus pattern (37 bp):
GACAACAGAGATGGGTTAGGGGCGTTACAATTTTTTT
Found at i:75105638 original size:40 final size:40
Alignment explanation
Indices: 75105579--75105804 Score: 289
Period size: 40 Copynumber: 5.7 Consensus size: 40
75105569 CGGATATAAC
* * *
75105579 CACTCGCAC-AAGGCCTTCGGGTCTTAGCCCGG-ATATGGT
1 CACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT
* * *
75105618 CACTAGCATAAATGCCTTCGGGTCTTAGCCCGG-ATATAG-
1 CACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT
75105657 CAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
1 C-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
* *
75105698 AACTCGCACCAATGCCTTCGGGACTTAGCCCGGAATTAGT
1 CACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
* *
75105738 AACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAAT
1 CACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
* *
75105778 CACTAGCACAAATGTCTTCGGGACTTA
1 CACTCGCACAAATGCCTTCGGGACTTA
75105805 ACCCCGTTAG
Statistics
Matches: 169, Mismatches: 14, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
39 8 0.05
40 159 0.94
41 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
Found at i:75105690 original size:80 final size:80
Alignment explanation
Indices: 75105555--75105804 Score: 319
Period size: 80 Copynumber: 3.1 Consensus size: 80
75105545 ACCCAAGTAT
* * * * * * *
75105555 CTTCGAGATTTAG-CCGGATATAACCACTCGCAC-AAGGCCTTCGGGTCTTAGCCCGG-ATATGG
1 CTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAG
*
75105617 TCACTAGCATAAATGC
65 TCACTAGCACAAATGC
*
75105633 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
* * *
75105698 AACTCGCACCAATGC
66 CACTAGCACAAATGC
* *
75105713 CTTCGGGACTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAA
1 CTTCGGGACTTAGCCCGGATA-TAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAG
*
75105777 TCACTAGCACAAATGT
65 TCACTAGCACAAATGC
75105793 CTTCGGGACTTA
1 CTTCGGGACTTA
75105805 ACCCCGTTAG
Statistics
Matches: 149, Mismatches: 19, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
78 10 0.07
79 19 0.13
80 118 0.79
81 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
CACTAGCACAAATGC
Found at i:75116478 original size:30 final size:31
Alignment explanation
Indices: 75116433--75116535 Score: 165
Period size: 30 Copynumber: 3.4 Consensus size: 31
75116423 GACATACTCT
*
75116433 TCGGATTACCCGTTGAACACTTGGAATATTA
1 TCGGATTACACGTTGAACACTTGGAATATTA
75116464 TCGGA-TACACGTTGAACACTTGGAATATTA
1 TCGGATTACACGTTGAACACTTGGAATATTA
* *
75116494 TCGGATTACCCATTGAACACTTGGAATATTA
1 TCGGATTACACGTTGAACACTTGGAATATTA
75116525 TCGGA-TACACG
1 TCGGATTACACG
75116536 AAAATTTTTG
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
30 33 0.50
31 33 0.50
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.30
Consensus pattern (31 bp):
TCGGATTACACGTTGAACACTTGGAATATTA
Found at i:75116513 original size:31 final size:31
Alignment explanation
Indices: 75116433--75116530 Score: 171
Period size: 31 Copynumber: 3.2 Consensus size: 31
75116423 GACATACTCT
75116433 TCGGATTACCCGTTGAACACTTGGAATATTA
1 TCGGATTACCCGTTGAACACTTGGAATATTA
*
75116464 TCGGA-TACACGTTGAACACTTGGAATATTA
1 TCGGATTACCCGTTGAACACTTGGAATATTA
*
75116494 TCGGATTACCCATTGAACACTTGGAATATTA
1 TCGGATTACCCGTTGAACACTTGGAATATTA
75116525 TCGGAT
1 TCGGAT
75116531 ACACGAAAAT
Statistics
Matches: 63, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
30 29 0.46
31 34 0.54
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32
Consensus pattern (31 bp):
TCGGATTACCCGTTGAACACTTGGAATATTA
Found at i:75121149 original size:39 final size:39
Alignment explanation
Indices: 75121106--75121217 Score: 188
Period size: 39 Copynumber: 2.9 Consensus size: 39
75121096 TCATATTTCT
* * *
75121106 AGCACGTAGCCTGTGGACCTTAAGTCCGGATATAATTCC
1 AGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTCC
75121145 AGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTCC
1 AGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTCC
*
75121184 AGCACATAGCCTGCGGACCCTAAGTTCGGATATA
1 AGCACATAGCCTGCGGACCCTAAGTCCGGATATA
75121218 CATCACTGAA
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 69 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (39 bp):
AGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTCC
Found at i:75125478 original size:26 final size:26
Alignment explanation
Indices: 75125449--75125556 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
75125439 TGGTACAAAT
75125449 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
75125475 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
75125501 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
75125527 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
75125553 TGAT
1 TGAT
75125557 GGGCATTTCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.32, C:0.07, G:0.25, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:75127028 original size:26 final size:26
Alignment explanation
Indices: 75126999--75127051 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
75126989 TTTACAGTTT
*
75126999 TACCTCTAGGAGATAAATT-ACCAAAA
1 TACCCCTAGG-GATAAATTGACCAAAA
* *
75127025 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCAAAA
75127051 T
1 T
75127052 GCATGTTTGC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.40, C:0.21, G:0.13, T:0.26
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCAAAA
Found at i:75130804 original size:39 final size:39
Alignment explanation
Indices: 75130761--75130876 Score: 196
Period size: 39 Copynumber: 3.0 Consensus size: 39
75130751 CTGGACATAT
* *
75130761 TTCCAGCACGTAGCCTGCGGACCTTAAGTCCGGATATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
75130800 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
* *
75130839 TTCCAGCACATAGCCTGCAGACCCTAAGTTCGGATATA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATA
75130877 CATCACTGAA
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 73 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
Found at i:75132859 original size:17 final size:17
Alignment explanation
Indices: 75132833--75132866 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
75132823 AAATTATGAA
*
75132833 GCACACGGCCGTGTGTC
1 GCACAAGGCCGTGTGTC
75132850 GCACAAGGCCGTGTGTC
1 GCACAAGGCCGTGTGTC
75132867 ACTTGTTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.15, C:0.32, G:0.35, T:0.18
Consensus pattern (17 bp):
GCACAAGGCCGTGTGTC
Found at i:75135286 original size:3 final size:3
Alignment explanation
Indices: 75135272--75135320 Score: 89
Period size: 3 Copynumber: 16.3 Consensus size: 3
75135262 AAATTAGAAT
*
75135272 ATC ATT ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
75135320 A
1 A
75135321 ATTCAATTAG
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.35, C:0.31, G:0.00, T:0.35
Consensus pattern (3 bp):
ATC
Found at i:75138339 original size:47 final size:47
Alignment explanation
Indices: 75138276--75138429 Score: 245
Period size: 47 Copynumber: 3.3 Consensus size: 47
75138266 CCCTTCGGGA
* *
75138276 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
75138323 CTTATCACATATATACACTTTCACATTCATCACATTGGCCGTTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
75138370 CTTATCTCATATATATACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
75138417 CTTATCACATATA
1 CTTATCACATATA
75138430 CATATCTTGT
Statistics
Matches: 96, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 96 1.00
ACGTcount: A:0.27, C:0.28, G:0.08, T:0.36
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:75152025 original size:15 final size:15
Alignment explanation
Indices: 75152005--75152035 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
75151995 AATTATATAA
75152005 TTCAGATATAGCCCT
1 TTCAGATATAGCCCT
75152020 TTCAGATATAGCCCT
1 TTCAGATATAGCCCT
75152035 T
1 T
75152036 CTTTAAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.26, G:0.13, T:0.35
Consensus pattern (15 bp):
TTCAGATATAGCCCT
Found at i:75154589 original size:40 final size:40
Alignment explanation
Indices: 75154534--75154651 Score: 191
Period size: 40 Copynumber: 3.0 Consensus size: 40
75154524 TGGAAAAGAA
* *
75154534 TATAATCGGGTTAAGTCCCAAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
75154574 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
* * *
75154614 TATAACCGGGTTAAGTCCTGAAGGCATTTGTGCTGGTT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTT
75154652 GTTACATCCG
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 73 1.00
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.31
Consensus pattern (40 bp):
TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
Found at i:75169065 original size:33 final size:31
Alignment explanation
Indices: 75169026--75169118 Score: 82
Period size: 33 Copynumber: 2.8 Consensus size: 31
75169016 TTTTTATTTT
*
75169026 TATATTATATATTTATAATTATTTATATATTA
1 TATATTATATATTTATAATTATTTATACA-TA
75169058 TCATATTATTTATATATTATATATTATTT-TACATA
1 T-ATATTA--TATAT-TTATA-ATTATTTATACATA
* *
75169093 TATACTTTTATA-TTATATTTATTTAT
1 TATA-TTATATATTTATAATTATTTAT
75169119 TTTATATTAT
Statistics
Matches: 51, Mismatches: 3, Indels: 15
0.74 0.04 0.22
Matches are distributed among these distances:
30 6 0.12
31 6 0.12
32 1 0.02
33 10 0.20
34 3 0.06
35 10 0.20
36 8 0.16
37 7 0.14
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (31 bp):
TATATTATATATTTATAATTATTTATACATA
Found at i:75169067 original size:11 final size:10
Alignment explanation
Indices: 75169028--75169131 Score: 62
Period size: 8 Copynumber: 10.6 Consensus size: 10
75169018 TTTATTTTTA
75169028 TATTATATA-
1 TATTATATAT
75169037 T-TTATA-AT
1 TATTATATAT
75169045 TATT-TATA-
1 TATTATATAT
75169053 TATTATCATAT
1 TATTAT-ATAT
75169064 TATT-TATA-
1 TATTATATAT
75169072 TATTATATAT
1 TATTATATAT
*
75169082 TATTTTACATAT
1 TA--TTATATAT
*
75169094 ATACTTTTATAT
1 -TA-TTATATAT
*
75169106 TA-TATTTATT
1 TATTATATA-T
*
75169116 TATTTTATAT
1 TATTATATAT
75169126 TATTAT
1 TATTAT
75169132 TGTCATTTTA
Statistics
Matches: 73, Mismatches: 9, Indels: 25
0.68 0.08 0.23
Matches are distributed among these distances:
7 1 0.01
8 16 0.22
9 16 0.22
10 15 0.21
11 10 0.14
12 13 0.18
13 2 0.03
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.62
Consensus pattern (10 bp):
TATTATATAT
Found at i:75169227 original size:143 final size:143
Alignment explanation
Indices: 75169063--75169364 Score: 447
Period size: 143 Copynumber: 2.1 Consensus size: 143
75169053 TATTATCATA
*
75169063 TTATTTATATATTATATATTATTTTACATATATACTTT-TATATTATA-T-TTA-TTT-ATTTTA
1 TTATTTATATGTTATATATTATTTTAC-TAT-TACTTTATATATTATATTATTATTTTCATTTTA
75169123 TATTATTATTGTCATTTTATACTATTAATATTTTTATCTATATATTGTTATCATT-AAAAGTTTT
64 TATTA-TA-T-TCATTTTA-A-TATTAATATTTTTATCTATATATTGTTATCATTAAAAAGTTTT
75169187 AACTTGTATTATATAC-TTT
124 AACTTGTATTATATACTTTT
75169206 TTATTTATATGTTATATATTATTTTACTATTACTTTATATATTATATTATTATTTTCACATTTTA
1 TTATTTATATGTTATATATTATTTTACTATTACTTTATATATTATATTATTATTTT--CATTTTA
75169271 TATTATATTCATTTTAATATTAATATTTTTATCTATATATTGTTATCATTAAAAAGTTTTAACTT
64 TATTATATTCATTTTAATATTAATATTTTTATCTATATATTGTTATCATTAAAAAGTTTTAACTT
75169336 GTATTATATACTTATTT
129 GTATTATATAC-T-TTT
75169353 TTATTTATATGT
1 TTATTTATATGT
75169365 AAATAATTAC
Statistics
Matches: 147, Mismatches: 1, Indels: 18
0.89 0.01 0.11
Matches are distributed among these distances:
141 6 0.04
142 12 0.08
143 60 0.41
144 29 0.20
145 11 0.07
146 1 0.01
147 17 0.12
148 11 0.07
ACGTcount: A:0.32, C:0.06, G:0.03, T:0.59
Consensus pattern (143 bp):
TTATTTATATGTTATATATTATTTTACTATTACTTTATATATTATATTATTATTTTCATTTTATA
TTATATTCATTTTAATATTAATATTTTTATCTATATATTGTTATCATTAAAAAGTTTTAACTTGT
ATTATATACTTTT
Found at i:75169270 original size:28 final size:29
Alignment explanation
Indices: 75169206--75169292 Score: 85
Period size: 30 Copynumber: 3.1 Consensus size: 29
75169196 TATATACTTT
*
75169206 TTATTTATATGTTATATATTATTTTACTA
1 TTATTTATATATTATATATTATTTTACTA
75169235 TTACTTTATATATTATATTATTATTTT-C-A
1 TTA-TTTATATATTATA-TATTATTTTACTA
* * *
75169264 -CATTT-TATATTATAT-TCATTTTAATA
1 TTATTTATATATTATATATTATTTTACTA
75169290 TTA
1 TTA
75169293 ATATTTTTAT
Statistics
Matches: 48, Mismatches: 5, Indels: 12
0.74 0.08 0.18
Matches are distributed among these distances:
24 6 0.12
25 1 0.02
26 10 0.21
27 4 0.08
28 1 0.02
29 4 0.08
30 13 0.27
31 9 0.19
ACGTcount: A:0.32, C:0.06, G:0.01, T:0.61
Consensus pattern (29 bp):
TTATTTATATATTATATATTATTTTACTA
Found at i:75169292 original size:17 final size:17
Alignment explanation
Indices: 75169264--75169297 Score: 52
Period size: 16 Copynumber: 2.0 Consensus size: 17
75169254 ATTATTTTCA
75169264 CATTTTATATT-ATATT
1 CATTTTATATTAATATT
75169280 CATTTTAATATTAATATT
1 CATTTT-ATATTAATATT
75169298 TTTATCTATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.38
17 5 0.31
18 5 0.31
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.59
Consensus pattern (17 bp):
CATTTTATATTAATATT
Found at i:75169415 original size:143 final size:147
Alignment explanation
Indices: 75169063--75169420 Score: 385
Period size: 143 Copynumber: 2.5 Consensus size: 147
75169053 TATTATCATA
* * * *
75169063 TTATTTATATATTATATATTATTTTACATATATACTTT-TATATTATATT--TA-TTT---ATTT
1 TTATTTATATGTTATATATTATATTAC-TAT-TACTTTATATATTATATTAACATTTTAACATAT
75169121 TATATTATTATTGTCATTTTATACTATTAATATTTTTATCTATATATTGTTATCATTAAAAGTTT
64 TATATTA-TATTGTCATTTTATACTATTAATATTTTTATCTATATATTGTTATCATTAAAAGTTT
75169186 TAACTTGTATTATATACTTT
128 TAACTTGTATTATATACTTT
* ** * *
75169206 TTATTTATATGTTATATATTATTTTACTATTACTTTATATATTATATTATTATTTTCACATTTTA
1 TTATTTATATGTTATATATTATATTACTATTACTTTATATATTATATTAACATTTTAACATATTA
75169271 TATTATA-T-TCATTTTA-A-TATTAATATTTTTATCTATATATTGTTATCATTAAAAAGTTTTA
66 TATTATATTGTCATTTTATACTATTAATATTTTTATCTATATATTGTTATCATT-AAAAGTTTTA
75169332 ACTTGTATTATATACTTATTT
130 ACTTGTATTATATAC---TTT
*
75169353 TTATTTATATG-TA-A-A-TA-ATTACT-TTAC-TTATAT-TCTATTATTACACATTTTGAAGAT
1 TTATTTATATGTTATATATTATATTACTATTACTTTATATAT-TA-TATTA-ACATTTT-AACAT
*
75169410 ATTATAATATA
62 ATTATATTATA
75169421 ATAATTGTAT
Statistics
Matches: 192, Mismatches: 8, Indels: 30
0.83 0.03 0.13
Matches are distributed among these distances:
139 1 0.01
140 8 0.04
141 15 0.08
142 24 0.12
143 73 0.38
144 29 0.15
145 12 0.06
146 3 0.02
147 16 0.08
148 11 0.06
ACGTcount: A:0.34, C:0.06, G:0.03, T:0.57
Consensus pattern (147 bp):
TTATTTATATGTTATATATTATATTACTATTACTTTATATATTATATTAACATTTTAACATATTA
TATTATATTGTCATTTTATACTATTAATATTTTTATCTATATATTGTTATCATTAAAAGTTTTAA
CTTGTATTATATACTTT
Found at i:75169584 original size:14 final size:14
Alignment explanation
Indices: 75169565--75169613 Score: 55
Period size: 14 Copynumber: 3.6 Consensus size: 14
75169555 TTCTAAACCA
*
75169565 TTATATTTTTATTT
1 TTATATATTTATTT
*
75169579 TTATATAATTA-TT
1 TTATATATTTATTT
* *
75169592 TTATAAATATATTT
1 TTATATATTTATTT
75169606 TTATATAT
1 TTATATAT
75169614 ATCATTAAAT
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
13 10 0.36
14 18 0.64
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (14 bp):
TTATATATTTATTT
Found at i:75169595 original size:13 final size:15
Alignment explanation
Indices: 75169574--75169612 Score: 57
Period size: 13 Copynumber: 2.8 Consensus size: 15
75169564 ATTATATTTT
75169574 TATTTTTATATAAT-
1 TATTTTTATATAATA
75169588 TA-TTTTATA-AATA
1 TATTTTTATATAATA
75169601 TATTTTTATATA
1 TATTTTTATATA
75169613 TATCATTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 3 0.14
13 9 0.41
14 9 0.41
15 1 0.05
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (15 bp):
TATTTTTATATAATA
Found at i:75175045 original size:39 final size:38
Alignment explanation
Indices: 75174991--75175065 Score: 114
Period size: 39 Copynumber: 1.9 Consensus size: 38
75174981 TGGAAAAAAA
*
75174991 TATAACCGGGTTAAGTCTCGAAGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGCATT-GTGCGGGTTAT
* *
75175030 TATAACCGGGTTAAGTCCCGAGGCATTGTGCTGGTT
1 TATAACCGGGTTAAGTCCCGAAGCATTGTGCGGGTT
75175066 GTTACATCCG
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
38 8 0.24
39 25 0.76
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.31
Consensus pattern (38 bp):
TATAACCGGGTTAAGTCCCGAAGCATTGTGCGGGTTAT
Found at i:75181256 original size:15 final size:15
Alignment explanation
Indices: 75181238--75181307 Score: 54
Period size: 15 Copynumber: 4.6 Consensus size: 15
75181228 TTATTTGCTT
* *
75181238 TATTTTTATTTATTA
1 TATTATTATATATTA
*
75181253 TATTATTATATAATA
1 TATTATTATATATTA
*
75181268 -ATT-TTATATTTACTCA
1 TATTATTATA--TA-TTA
75181284 TATTATTATATATTA
1 TATTATTATATATTA
*
75181299 TATAATTAT
1 TATTATTAT
75181308 TTTCACATAT
Statistics
Matches: 43, Mismatches: 7, Indels: 10
0.72 0.12 0.17
Matches are distributed among these distances:
13 5 0.12
14 3 0.07
15 24 0.56
16 3 0.07
17 3 0.07
18 5 0.12
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (15 bp):
TATTATTATATATTA
Found at i:75181277 original size:18 final size:18
Alignment explanation
Indices: 75181256--75181352 Score: 67
Period size: 18 Copynumber: 5.3 Consensus size: 18
75181246 TTTATTATAT
*
75181256 TATTATATAATAATTTTA
1 TATTATATAATTATTTTA
*
75181274 TATT-TACTCATATTATTATA
1 TATTATA-T-A-ATTATTTTA
75181294 TATTATATAATTATTTTCA
1 TATTATATAATTATTTT-A
* * *
75181313 CA-TATATACTTTATATTA
1 TATTATATA-ATTATTTTA
*
75181331 TACTATAT--TTATTTTA
1 TATTATATAATTATTTTA
75181347 TATTAT
1 TATTAT
75181353 TATGTCATTT
Statistics
Matches: 63, Mismatches: 9, Indels: 16
0.72 0.10 0.18
Matches are distributed among these distances:
16 12 0.19
17 2 0.03
18 20 0.32
19 15 0.24
20 12 0.19
21 2 0.03
ACGTcount: A:0.37, C:0.06, G:0.00, T:0.57
Consensus pattern (18 bp):
TATTATATAATTATTTTA
Found at i:75181309 original size:31 final size:31
Alignment explanation
Indices: 75181243--75181332 Score: 78
Period size: 31 Copynumber: 2.9 Consensus size: 31
75181233 TGCTTTATTT
* * **
75181243 TTATTTA-TTATATTATTATATAATA-ATTT
1 TTATTTACTCATATTATTATATATTATATAA
75181272 TATATTTACTCATATTATTATATATTATATAA
1 T-TATTTACTCATATTATTATATATTATATAA
* *
75181304 TTATTTTCACATATATACTT-TATATTATA
1 TTATTTACTCATAT-TA-TTATATATTATA
75181333 CTATATTTAT
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
29 1 0.02
30 6 0.12
31 27 0.54
32 14 0.28
33 2 0.04
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.57
Consensus pattern (31 bp):
TTATTTACTCATATTATTATATATTATATAA
Found at i:75181584 original size:21 final size:20
Alignment explanation
Indices: 75181534--75181584 Score: 50
Period size: 21 Copynumber: 2.4 Consensus size: 20
75181524 CATTAATTAC
*
75181534 TTATTTCATATTATTCATAAC
1 TTATTT-ATATTATTCATAAA
75181555 TTATATTATATATATT-ATACAA
1 TTAT-TTATAT-TATTCATA-AA
75181577 TTATTTAT
1 TTATTTAT
75181585 TGTAAATATA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
21 15 0.58
22 11 0.42
ACGTcount: A:0.37, C:0.08, G:0.00, T:0.55
Consensus pattern (20 bp):
TTATTTATATTATTCATAAA
Found at i:75185434 original size:22 final size:22
Alignment explanation
Indices: 75185363--75185434 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
75185353 GTATATATGA
75185363 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
75185385 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
75185410 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
75185432 GAT
1 GAT
75185435 GAATGTGAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:75185477 original size:23 final size:23
Alignment explanation
Indices: 75185407--75185478 Score: 60
Period size: 23 Copynumber: 3.1 Consensus size: 23
75185397 CATGCATATA
75185407 TGTGATAAGGCCGAATGGCCAATG
1 TGTGATAAGGCCGAATGG-CAATG
* * *
75185431 TGATGA-ATGTG-AGCAT-GCATATG
1 TG-TGATAAG-GCCGAATGGCA-ATG
75185454 TGTGATAAGGCCGAATGGCAATG
1 TGTGATAAGGCCGAATGGCAATG
75185477 TG
1 TG
75185479 GTGAATATGA
Statistics
Matches: 36, Mismatches: 6, Indels: 13
0.65 0.11 0.24
Matches are distributed among these distances:
22 6 0.17
23 16 0.44
24 10 0.28
25 4 0.11
ACGTcount: A:0.29, C:0.12, G:0.33, T:0.25
Consensus pattern (23 bp):
TGTGATAAGGCCGAATGGCAATG
Found at i:75185494 original size:46 final size:47
Alignment explanation
Indices: 75185334--75185526 Score: 280
Period size: 47 Copynumber: 4.1 Consensus size: 47
75185324 TTAGGATTTT
** * *
75185334 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
75185381 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
75185428 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGG-CA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
75185474 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
75185521 ATGTGA
1 ATGTGA
75185527 AATATGTATG
Statistics
Matches: 131, Mismatches: 14, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
46 40 0.31
47 91 0.69
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:75185513 original size:93 final size:94
Alignment explanation
Indices: 75185334--75185526 Score: 280
Period size: 93 Copynumber: 2.1 Consensus size: 94
75185324 TTAGGATTTT
** * *
75185334 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATATGAACA
*
75185399 TGCATATATGTGATAAGGCCGAATGGCCA
66 TGCATATATGTGATAAAGCCGAATGGCCA
* * * *
75185428 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGG-CAATGTGGTGAATATGAACA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATATGAACA
* *
75185492 TGCATATATGTGGTAAAGCCGAATGGCTA
66 TGCATATATGTGATAAAGCCGAATGGCCA
75185521 ATGTGA
1 ATGTGA
75185527 AATATGTATG
Statistics
Matches: 88, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
93 50 0.57
94 38 0.43
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.27
Consensus pattern (94 bp):
ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATATGAACA
TGCATATATGTGATAAAGCCGAATGGCCA
Found at i:75185560 original size:93 final size:93
Alignment explanation
Indices: 75185369--75185662 Score: 314
Period size: 93 Copynumber: 3.1 Consensus size: 93
75185359 ATGAGATAAG
* * * *
75185369 GCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGA
1 GCCGAATGG-CAATGTGATGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTAATGTGA
* * * *
75185434 TGA-ATG--TGAGCATGCATATGTGTGATAAG
65 -AATATGTATGAGAATGTATATGTG-G-TAAA
*
75185463 GCCGAATGGCAATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 GCCGAATGGCAATGTGATGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTAATGTGAA
75185528 ATATGTATGAGAATGTATATGTGGTAAA
66 ATATGTATGAGAATGTATATGTGGTAAA
* * *
75185556 GCCGAATGGCTAATGTGAAAT-ATGTATGAGATATGC--ATATGTGGTAAAGCTGAATGG-TCAA
1 GCCGAATGGC-AATGTG--ATGA-ATATGA-ACATGCATATATGTGGTAAAGCCGAATGGCT-AA
*
75185617 TGTGAATATATATATGAGATATGTATATGTGGTAAA
60 TGTGAA-ATATGTATGAGA-ATGTATATGTGGTAAA
75185653 GCCGAATGGC
1 GCCGAATGGC
75185663 TAGTGTGAAA
Statistics
Matches: 175, Mismatches: 14, Indels: 19
0.84 0.07 0.09
Matches are distributed among these distances:
92 1 0.01
93 66 0.38
94 17 0.10
95 43 0.25
96 17 0.10
97 31 0.18
ACGTcount: A:0.34, C:0.10, G:0.28, T:0.28
Consensus pattern (93 bp):
GCCGAATGGCAATGTGATGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTAATGTGAA
ATATGTATGAGAATGTATATGTGGTAAA
Found at i:75185652 original size:49 final size:48
Alignment explanation
Indices: 75185496--75185678 Score: 298
Period size: 47 Copynumber: 3.8 Consensus size: 48
75185486 TGAACATGCA
75185496 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGA-ATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
75185543 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* * *
75185591 CATATGTGGTAAAGCTGAATGG-TCAATGTGAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTGAA-ATATGTATGAGATATG
*
75185640 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
75185679 GGCGATGTGC
Statistics
Matches: 125, Mismatches: 7, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
47 45 0.36
48 37 0.30
49 42 0.34
50 1 0.01
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:75185656 original size:97 final size:95
Alignment explanation
Indices: 75185497--75185678 Score: 303
Period size: 97 Copynumber: 1.9 Consensus size: 95
75185487 GAACATGCAT
*
75185497 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAATGTATATGTGGTAAAGCCGAA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGAATGTATATGTGGTAAAGCCGAA
75185562 TGGCTAATGTGAAATATGTATGAGATATGC
66 TGGCTAATGTGAAATATGTATGAGATATGC
*
75185592 ATATGTGGTAAAGCTGAATGG-TCAATGTGAATATATATATGAGATATGTATATGTGGTAAAGCC
1 ATATGTGGTAAAGCCGAATGGCT-AATGTGAA-ATATATATGAGA-ATGTATATGTGGTAAAGCC
*
75185656 GAATGGCTAGTGTGAAATATGTA
63 GAATGGCTAATGTGAAATATGTA
75185679 GGCGATGTGC
Statistics
Matches: 81, Mismatches: 3, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
94 1 0.01
95 28 0.35
96 11 0.14
97 41 0.51
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.31
Consensus pattern (95 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGAATGTATATGTGGTAAAGCCGAA
TGGCTAATGTGAAATATGTATGAGATATGC
Done.