Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 221 of 295
Found at i:76125634 original size:23 final size:24
Alignment explanation
Indices: 76125604--76125659 Score: 68
Period size: 23 Copynumber: 2.5 Consensus size: 24
76125594 ATTATTTATT
76125604 AAATAATATATT-TTA-TAATTTC
1 AAATAATATATTGTTACTAATTTC
76125626 AAATAAATATATTGTTACTAA-TT-
1 AAAT-AATATATTGTTACTAATTTC
76125649 AAATAAT-TATT
1 AAATAATATATT
76125660 AGTGTGATTT
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
21 4 0.13
22 7 0.23
23 12 0.39
24 5 0.16
25 3 0.10
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.46
Consensus pattern (24 bp):
AAATAATATATTGTTACTAATTTC
Found at i:76126643 original size:18 final size:17
Alignment explanation
Indices: 76126617--76126655 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
76126607 TTTTATAAAA
76126617 TTTTAAATTTTAGAAATT
1 TTTTAAATTTTA-AAATT
* *
76126635 TTTTGAATTTTAAGATT
1 TTTTAAATTTTAAAATT
76126652 TTTT
1 TTTT
76126656 TATTTCAAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 8 0.42
18 11 0.58
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (17 bp):
TTTTAAATTTTAAAATT
Found at i:76131052 original size:19 final size:17
Alignment explanation
Indices: 76131028--76131064 Score: 56
Period size: 19 Copynumber: 2.1 Consensus size: 17
76131018 TCATGAATTC
76131028 AAATGAAAAGAGAGGGAAA
1 AAATGAAAA-AGA-GGAAA
76131047 AAATGAAAAAGAGGAAA
1 AAATGAAAAAGAGGAAA
76131064 A
1 A
76131065 CAGAATAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 6 0.33
18 3 0.17
19 9 0.50
ACGTcount: A:0.68, C:0.00, G:0.27, T:0.05
Consensus pattern (17 bp):
AAATGAAAAAGAGGAAA
Found at i:76131964 original size:177 final size:177
Alignment explanation
Indices: 76131666--76132306 Score: 937
Period size: 177 Copynumber: 3.6 Consensus size: 177
76131656 ATTCAAGGAA
* * * * *
76131666 ATAAGGCTAATGGCTTAAATCTGCTCCATTGCTGATACATGGAGATAAGATTC-ACATCTTCAAT
1 ATAAGGCTAGTGGCTAAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCGTCTTCAAT
* * *
76131730 CTGCTCCACTACTGCTTAGGGAGATAAGATCTACAACTCTCAGTCTTCTTCCTTGCTACCTCAGG
66 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTCTCAGTCTGCTTCCTTGCTACCTCAGG
* * * *
76131795 AAGATAAAACTTGTATCTTCAACCTGTTCTCTTGCTACCTTAGAGAG
131 AAGATAAGACTTGTATCTTCAACTTGCTCTCTTGCTACCTCAGAGAG
76131842 ATAAGGCTAGTGGCTAAAATCTGCTCCATTGCCGATACATGGAGATAAGATT-GACCGTCTTCAA
1 ATAAGGCTAGTGGCTAAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCG-CCGTCTTCAA
*
76131906 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTCTCAGTCTGCTTTCTTGCTACCTCAG
65 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTCTCAGTCTGCTTCCTTGCTACCTCAG
*
76131971 GAAGATAAGATTTGTATCTTCAACTTGCTCTCTTGCTACCTCAGAGAG
130 GAAGATAAGACTTGTATCTTCAACTTGCTCTCTTGCTACCTCAGAGAG
* * * * *
76132019 ATAAGACTGGTGGCTAAAATCTACTCCATTGCCGATACATGGAGATAAAATTCGCCGTCTTCGAT
1 ATAAGGCTAGTGGCTAAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCGTCTTCAAT
*
76132084 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTCTCAGTCTGGTTCCTTGCTACCTCAGG
66 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTCTCAGTCTGCTTCCTTGCTACCTCAGG
* *
76132149 AAGATAAGACTTGTATCTTCAGCTTGCTCTCTTACTACCTCAGAGAG
131 AAGATAAGACTTGTATCTTCAACTTGCTCTCTTGCTACCTCAGAGAG
* * * ** * ***
76132196 ATAAGGCTAGTGGCTAAAACCTGCTCCATTACCGATACATAGAGATAAGATTCGTTGTTTTTGGT
1 ATAAGGCTAGTGGCTAAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCGTCTTCAAT
* * *
76132261 CTTCTCCACTACTGCTTAGGGAGATAAGACCTGTAATT-TCCAGTCT
66 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTCT-CAGTCT
76132307 ACTCCGCTAC
Statistics
Matches: 422, Mismatches: 39, Indels: 7
0.90 0.08 0.01
Matches are distributed among these distances:
176 50 0.12
177 371 0.88
178 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (177 bp):
ATAAGGCTAGTGGCTAAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCGTCTTCAAT
CTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTCTCAGTCTGCTTCCTTGCTACCTCAGG
AAGATAAGACTTGTATCTTCAACTTGCTCTCTTGCTACCTCAGAGAG
Found at i:76134223 original size:17 final size:18
Alignment explanation
Indices: 76134191--76134225 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
76134181 CGTGAATTCC
*
76134191 AATGAAAAGGGAGAAAAA
1 AATGAAAAGAGAGAAAAA
76134209 AATGAAAA-AGAGAAAAA
1 AATGAAAAGAGAGAAAAA
76134226 CAGAATAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.71, C:0.00, G:0.23, T:0.06
Consensus pattern (18 bp):
AATGAAAAGAGAGAAAAA
Found at i:76135824 original size:19 final size:20
Alignment explanation
Indices: 76135788--76135825 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
76135778 ATTAATTTTA
76135788 AATTTAATTATAAAATATAG
1 AATTTAATTATAAAATATAG
*
76135808 AATTTAA-TATAAGATATA
1 AATTTAATTATAAAATATA
76135826 TTTATTTTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.39
Consensus pattern (20 bp):
AATTTAATTATAAAATATAG
Found at i:76136012 original size:17 final size:17
Alignment explanation
Indices: 76135966--76136012 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
76135956 TTTTAACACA
*
76135966 ATTTAATTAT-TATCAT
1 ATTTAATTATAAATCAT
*
76135982 ATTTAA-AATGAAATCAT
1 ATTTAATTAT-AAATCAT
76135999 ATTTAATTATAAAT
1 ATTTAATTATAAAT
76136013 AATTTTCTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
15 2 0.08
16 6 0.24
17 15 0.60
18 2 0.08
ACGTcount: A:0.47, C:0.04, G:0.02, T:0.47
Consensus pattern (17 bp):
ATTTAATTATAAATCAT
Found at i:76136770 original size:18 final size:16
Alignment explanation
Indices: 76136749--76136793 Score: 54
Period size: 16 Copynumber: 2.7 Consensus size: 16
76136739 AATAAAAAAT
76136749 TTATTTTTAATTGAATAG
1 TTATTTTTAATT--ATAG
* *
76136767 TTATTTGTAACTATAG
1 TTATTTTTAATTATAG
76136783 TTATTTTTAAT
1 TTATTTTTAAT
76136794 GGCACCTGAA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
16 13 0.57
18 10 0.43
ACGTcount: A:0.31, C:0.02, G:0.09, T:0.58
Consensus pattern (16 bp):
TTATTTTTAATTATAG
Found at i:76137862 original size:66 final size:66
Alignment explanation
Indices: 76137672--76137868 Score: 313
Period size: 66 Copynumber: 3.0 Consensus size: 66
76137662 CAAACAAAGA
* * * *
76137672 CTATTCAAGTGTCACGGTTGGTGACCAAGAATGGAGGTCCTTATTACAAGGAGATGAAGGAACGG
1 CTATTCAAGTTTCACAGTTGGTGACCAAGAATGGAGGTCCTTATTACAGGGAGATGATGGAACGG
76137737 G
66 G
*
76137738 CTATTCAAGTTTCACAGTTGGTGACCAAGAATGGAGGTCCTTATTGCAGGGAGATGATGGAACGG
1 CTATTCAAGTTTCACAGTTGGTGACCAAGAATGGAGGTCCTTATTACAGGGAGATGATGGAACGG
76137803 G
66 G
* * * *
76137804 CTATTCAAGTTTCACAGTTGCTGACCAAGAATGGAGGTTCTTATTACAGGGAGCTGATGAAACGG
1 CTATTCAAGTTTCACAGTTGGTGACCAAGAATGGAGGTCCTTATTACAGGGAGATGATGGAACGG
76137869 AACAAAACAT
Statistics
Matches: 121, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
66 121 1.00
ACGTcount: A:0.29, C:0.16, G:0.30, T:0.25
Consensus pattern (66 bp):
CTATTCAAGTTTCACAGTTGGTGACCAAGAATGGAGGTCCTTATTACAGGGAGATGATGGAACGG
G
Found at i:76138712 original size:12 final size:12
Alignment explanation
Indices: 76138695--76138719 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
76138685 TTGTTGTACT
76138695 TGTTGGCAAATA
1 TGTTGGCAAATA
76138707 TGTTGGCAAATA
1 TGTTGGCAAATA
76138719 T
1 T
76138720 ACTATTGTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.08, G:0.24, T:0.36
Consensus pattern (12 bp):
TGTTGGCAAATA
Found at i:76143398 original size:48 final size:48
Alignment explanation
Indices: 76143320--76143469 Score: 183
Period size: 48 Copynumber: 3.1 Consensus size: 48
76143310 CACATGGTAG
* * * * *
76143320 GATGCGAATGCCATATCCTAAATATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACACATC
* ** **
76143368 GATGCCAATGCCATGTCCCAAACATTGTCTTACATGGGATCGTAGGTC
1 GATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACACATC
* **
76143416 GATGCCAATGCTATGTCCCGGACATGGTCTTACATGGGATCACACATC
1 GATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACACATC
76143464 GATGCC
1 GATGCC
76143470 GATAGCTAGC
Statistics
Matches: 85, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
48 85 1.00
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.27
Consensus pattern (48 bp):
GATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACACATC
Found at i:76150097 original size:27 final size:27
Alignment explanation
Indices: 76150060--76150115 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
76150050 CAAGCTCATT
76150060 ATTAATAGCATCTCTCCAAAAACTAAC
1 ATTAATAGCATCTCTCCAAAAACTAAC
76150087 ATTAATAGCATCTCTCCAAAAACTAAC
1 ATTAATAGCATCTCTCCAAAAACTAAC
76150114 AT
1 AT
76150116 CTATTCAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.45, C:0.25, G:0.04, T:0.27
Consensus pattern (27 bp):
ATTAATAGCATCTCTCCAAAAACTAAC
Found at i:76152083 original size:20 final size:20
Alignment explanation
Indices: 76152058--76152102 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
76152048 AGGACCTAAA
* *
76152058 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAATTCTAAAATTTG
*
76152078 ATGAAAAATTCTAAAATTTT
1 ATGAAAAATTCTAAAATTTG
76152098 ATGAA
1 ATGAA
76152103 TACATGTGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.49, C:0.02, G:0.13, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTG
Found at i:76153862 original size:33 final size:33
Alignment explanation
Indices: 76153766--76153862 Score: 140
Period size: 33 Copynumber: 2.9 Consensus size: 33
76153756 GGCACACGAG
*
76153766 TAGAGACACGGGCGTGTGTCTCAGTCGTGTGGCC
1 TAGA-ACACGGGCGTGTGTCTCAGCCGTGTGGCC
* *
76153800 TAGAACACGGGCGTGTGTCTCAACTGTGTGGCC
1 TAGAACACGGGCGTGTGTCTCAGCCGTGTGGCC
**
76153833 TAGAACACGGGCGTGTGTCTTGGCCGTGTG
1 TAGAACACGGGCGTGTGTCTCAGCCGTGTG
76153863 AAACCTGCAC
Statistics
Matches: 56, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
33 52 0.93
34 4 0.07
ACGTcount: A:0.15, C:0.23, G:0.37, T:0.25
Consensus pattern (33 bp):
TAGAACACGGGCGTGTGTCTCAGCCGTGTGGCC
Found at i:76156043 original size:97 final size:97
Alignment explanation
Indices: 76155864--76156059 Score: 295
Period size: 96 Copynumber: 2.0 Consensus size: 97
76155854 GCCTCTTATT
* **
76155864 TATAGGATTTTGGAAGGGGAAAAACATAAGCTAGCAGGGGCAAAATGATAATATTTCCATATAAC
1 TATAGGATTTTGGAAGGGGAAAAACATAAGCTAGAAAAGGCAAAATGATAATATTTCCATATAAC
* * *
76155929 GGTCAGAAAAGTATTTAATATTTTTGTAACTG
66 GGTAAAAAAAATATTTAATATTTTTGTAACTG
* **
76155961 TATAGGATTTTGGAAGGGG-AAAATATAATTTAGAAAAGGCAAAATGATAATATTTCCATATAAC
1 TATAGGATTTTGGAAGGGGAAAAACATAAGCTAGAAAAGGCAAAATGATAATATTTCCATATAAC
76156025 GGTAAAAAAATATATTTAATATTTTTGTAACTG
66 GGTAAAAAAA-ATATTTAATATTTTTGTAACTG
76156058 TA
1 TA
76156060 AAATATAGTT
Statistics
Matches: 89, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
96 47 0.53
97 42 0.47
ACGTcount: A:0.42, C:0.07, G:0.19, T:0.32
Consensus pattern (97 bp):
TATAGGATTTTGGAAGGGGAAAAACATAAGCTAGAAAAGGCAAAATGATAATATTTCCATATAAC
GGTAAAAAAAATATTTAATATTTTTGTAACTG
Found at i:76158366 original size:21 final size:21
Alignment explanation
Indices: 76158325--76158367 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
76158315 GAAGTAAGTC
* *
76158325 AAATATTTATAAACTCTTAAA
1 AAATAATTAAAAACTCTTAAA
76158346 AAATAATTAAAAA-TCTCTAAA
1 AAATAATTAAAAACTCT-TAAA
76158367 A
1 A
76158368 TAAAGATAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 3 0.16
21 16 0.84
ACGTcount: A:0.58, C:0.09, G:0.00, T:0.33
Consensus pattern (21 bp):
AAATAATTAAAAACTCTTAAA
Found at i:76167079 original size:41 final size:41
Alignment explanation
Indices: 76167028--76167123 Score: 120
Period size: 41 Copynumber: 2.3 Consensus size: 41
76167018 AAAAAATGCA
* * * *
76167028 TCCAGTTGGAAGCGCTTTTTGCGTGTCACCAGTAAAACACT
1 TCCAGCTGGAAGCGCTTTCTGCATGTCAACAGTAAAACACT
* **
76167069 TCCAGCTGGAAGCTCTTTCTGCATGTCAACAGTAAAATGCT
1 TCCAGCTGGAAGCGCTTTCTGCATGTCAACAGTAAAACACT
*
76167110 TCTAGCTGGAAGCG
1 TCCAGCTGGAAGCG
76167124 TTAACGAAAA
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
41 46 1.00
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.28
Consensus pattern (41 bp):
TCCAGCTGGAAGCGCTTTCTGCATGTCAACAGTAAAACACT
Found at i:76169544 original size:32 final size:32
Alignment explanation
Indices: 76169507--76169594 Score: 106
Period size: 32 Copynumber: 2.8 Consensus size: 32
76169497 TAAAGGAATA
**
76169507 TTGTTATCATTTAACAAAATGCTAGTTG-ATAT
1 TTGTTATCATTTAACAAAATGAAAGTTGTA-AT
* *
76169539 TTGTTATCATTTTACAAAATTAAAGTTGTAAT
1 TTGTTATCATTTAACAAAATGAAAGTTGTAAT
* *
76169571 TTGTTATCTTTTCACAAAATGAAA
1 TTGTTATCATTTAACAAAATGAAA
76169595 AACTGATATT
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
32 47 0.98
33 1 0.02
ACGTcount: A:0.36, C:0.09, G:0.10, T:0.44
Consensus pattern (32 bp):
TTGTTATCATTTAACAAAATGAAAGTTGTAAT
Found at i:76170568 original size:17 final size:17
Alignment explanation
Indices: 76170525--76170570 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 17
76170515 CAATTACATA
*
76170525 CAAAGAATATAAAAAAC
1 CAAAGAATATTAAAAAC
* *
76170542 AAATAGAATATTATAAAC
1 CAA-AGAATATTAAAAAC
76170560 CAAAGAATATT
1 CAAAGAATATT
76170571 GGTGGTGATT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
17 10 0.42
18 14 0.58
ACGTcount: A:0.63, C:0.09, G:0.07, T:0.22
Consensus pattern (17 bp):
CAAAGAATATTAAAAAC
Found at i:76171437 original size:17 final size:17
Alignment explanation
Indices: 76171415--76171448 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
76171405 AAACTTCTTC
76171415 ATCGTCCACAACCCTAA
1 ATCGTCCACAACCCTAA
76171432 ATCGTCCACAACCCTAA
1 ATCGTCCACAACCCTAA
76171449 CTTCTTGTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.41, G:0.06, T:0.18
Consensus pattern (17 bp):
ATCGTCCACAACCCTAA
Found at i:76172285 original size:15 final size:15
Alignment explanation
Indices: 76172267--76172295 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
76172257 TTTACTATCA
76172267 TGTCTTTTATATTTC
1 TGTCTTTTATATTTC
76172282 TGTCTTTTATATTT
1 TGTCTTTTATATTT
76172296 TGCATGCATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.10, G:0.07, T:0.69
Consensus pattern (15 bp):
TGTCTTTTATATTTC
Found at i:76173730 original size:103 final size:104
Alignment explanation
Indices: 76173551--76173815 Score: 417
Period size: 103 Copynumber: 2.6 Consensus size: 104
76173541 AACCGTTATT
* * * *
76173551 GGTGGATCTCGCACTTAGCACCACCACTTAATCGGGGAATCAGCACTTAGCAACCCCTTGGGGGA
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
** *
76173616 ATCAGCACATAGCAACCCCCTTT-TTATTTCAGAGATAC
66 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
76173654 GGTGGATATCGCACTTAGCACCACCAATGAA-CTGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 GGTGGATATCGCACTTAGCACCACCAATGAATC-GGGGAATCAGCACTTAGCAACCCCTCGGGGG
76173718 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
65 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
* **
76173758 GGTGGATATCGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
76173816 TTATGTACAA
Statistics
Matches: 149, Mismatches: 10, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
102 1 0.01
103 82 0.55
104 65 0.44
105 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.20
Consensus pattern (104 bp):
GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
Found at i:76178655 original size:27 final size:27
Alignment explanation
Indices: 76178581--76178669 Score: 101
Period size: 27 Copynumber: 3.3 Consensus size: 27
76178571 CAAAATAGTC
* * *
76178581 ATTTTACCCTAC-AGAGGTATGTCAGTT
1 ATTTTACACTACAAG-GGTATTTCAGTA
*
76178608 ACTTTACACTACAAGGGTATTTCAGTA
1 ATTTTACACTACAAGGGTATTTCAGTA
*
76178635 ATTTTACACTATAAGGGTATTTC-GATA
1 ATTTTACACTACAAGGGTATTTCAG-TA
76178662 ATTTTACA
1 ATTTTACA
76178670 AATCGGGGGT
Statistics
Matches: 54, Mismatches: 6, Indels: 4
0.84 0.09 0.06
Matches are distributed among these distances:
26 1 0.02
27 51 0.94
28 2 0.04
ACGTcount: A:0.31, C:0.16, G:0.15, T:0.38
Consensus pattern (27 bp):
ATTTTACACTACAAGGGTATTTCAGTA
Found at i:76179004 original size:27 final size:27
Alignment explanation
Indices: 76178621--76179015 Score: 365
Period size: 27 Copynumber: 14.7 Consensus size: 27
76178611 TTACACTACA
* * *
76178621 AGGGTATTTCAGTAATTTTACACTAT-A
1 AGGGTATTTCGGTAATTTTACA-AATCG
*
76178648 AGGGTATTTCGATAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * * *
76178675 GGGGTGTTTTGGTAAATTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
*
76178702 AGGGTATTTCGATAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
76178729 AGGGTATTTCGATAATTTCACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * *
76178756 AGGGTGTTTCGATAATTTTACAAATTG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
76178783 AGGGTGTTTCAGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* ** *
76178810 AGGGTGTTTCAATAATTTCACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* ** *
76178837 CA-AGTATTTTAGTAGTTTTACAAATCG
1 -AGGGTATTTCGGTAATTTTACAAATCG
** **
76178864 AGGGTATTTTAGTAA-TTT-CATAATTA
1 AGGGTATTTCGGTAATTTTACA-AATCG
76178890 AGGGTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
*
76178917 -GGAGTATTTCGGTAATTTTACAAA-CTA
1 AGG-GTATTTCGGTAATTTTACAAATC-G
* *
76178944 AGGGTATTTTGGTAACTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
*
76178971 -GGCGTATTTTGGTAATTTTACAAA-CTG
1 AGG-GTATTTCGGTAATTTTACAAATC-G
* *
76178998 GGGGTATTTTGGTAATTT
1 AGGGTATTTCGGTAATTT
76179016 CTCTTTATTA
Statistics
Matches: 313, Mismatches: 42, Indels: 26
0.82 0.11 0.07
Matches are distributed among these distances:
25 2 0.01
26 28 0.09
27 275 0.88
28 8 0.03
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.39
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTTACAAATCG
Found at i:76180670 original size:20 final size:21
Alignment explanation
Indices: 76180625--76180671 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
76180615 TACGAGTGAG
*
76180625 CACACAGGTGTGTGGGGTAGC
1 CACACAGGTGTGTGGGATAGC
* *
76180646 TACACGGGTGTGT-GGATAGC
1 CACACAGGTGTGTGGGATAGC
76180666 CACACA
1 CACACA
76180672 ACCTTGTTTA
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
20 10 0.48
21 11 0.52
ACGTcount: A:0.23, C:0.21, G:0.36, T:0.19
Consensus pattern (21 bp):
CACACAGGTGTGTGGGATAGC
Found at i:76182171 original size:17 final size:16
Alignment explanation
Indices: 76182149--76182208 Score: 54
Period size: 17 Copynumber: 3.8 Consensus size: 16
76182139 ATTATTTTAA
76182149 TAATTTAATATTTAATT
1 TAATTTAATATTT-ATT
*
76182166 TAATTTAATACTTATCT
1 TAATTTAATATTTAT-T
*
76182183 TAA--TAGTATTT-TAT
1 TAATTTAATATTTAT-T
76182197 TAATTTAATATT
1 TAATTTAATATT
76182209 AAAACAATTA
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
14 5 0.14
15 6 0.17
16 8 0.23
17 16 0.46
ACGTcount: A:0.38, C:0.03, G:0.02, T:0.57
Consensus pattern (16 bp):
TAATTTAATATTTATT
Found at i:76183966 original size:15 final size:15
Alignment explanation
Indices: 76183929--76183984 Score: 80
Period size: 15 Copynumber: 3.9 Consensus size: 15
76183919 ATTTATCAAT
* *
76183929 TTAAAACCCAAAACC
1 TTAAAGCCCTAAACC
76183944 TT--AGCCCTAAACC
1 TTAAAGCCCTAAACC
76183957 TTAAAGCCCTAAACC
1 TTAAAGCCCTAAACC
76183972 TTAAAGCCCTAAA
1 TTAAAGCCCTAAA
76183985 AAACCAGAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
13 11 0.30
15 26 0.70
ACGTcount: A:0.43, C:0.32, G:0.05, T:0.20
Consensus pattern (15 bp):
TTAAAGCCCTAAACC
Found at i:76183970 original size:28 final size:29
Alignment explanation
Indices: 76183929--76183984 Score: 78
Period size: 28 Copynumber: 1.9 Consensus size: 29
76183919 ATTTATCAAT
76183929 TTAAAACCCAAAACCTT-AGCCCTAAACC
1 TTAAAACCCAAAACCTTAAGCCCTAAACC
* *
76183957 TTAAAGCCCTAAACCTTAAAGCCCTAAA
1 TTAAAACCCAAAACCTT-AAGCCCTAAA
76183985 AAACCAGAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 15 0.62
30 9 0.38
ACGTcount: A:0.43, C:0.32, G:0.05, T:0.20
Consensus pattern (29 bp):
TTAAAACCCAAAACCTTAAGCCCTAAACC
Found at i:76187986 original size:34 final size:33
Alignment explanation
Indices: 76187937--76188007 Score: 88
Period size: 33 Copynumber: 2.1 Consensus size: 33
76187927 TTAACTTGGG
* * *
76187937 TTTAGTTTTAGTTAATTAATTTTATTATTGTTAT
1 TTTAGTTTAAGTTAATT-AGTTAATTATTGTTAT
* *
76187971 TTTAGTTTAATTTAATTAGTTAATTATTGTTGT
1 TTTAGTTTAAGTTAATTAGTTAATTATTGTTAT
76188004 TTTA
1 TTTA
76188008 AATTCACATT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
33 17 0.53
34 15 0.47
ACGTcount: A:0.27, C:0.00, G:0.10, T:0.63
Consensus pattern (33 bp):
TTTAGTTTAAGTTAATTAGTTAATTATTGTTAT
Found at i:76189361 original size:17 final size:17
Alignment explanation
Indices: 76189303--76189365 Score: 54
Period size: 17 Copynumber: 3.3 Consensus size: 17
76189293 ACTTAACCCT
76189303 TTTTCTATTAAAATATTA
1 TTTT-TATTAAAATATTA
*
76189321 TTTTTAATTTTTAATTATATTTA
1 TTTTT-A---TTAA-AATA-TTA
76189344 TTTTTATTAAAATATTA
1 TTTTTATTAAAATATTA
76189361 TTTTT
1 TTTTT
76189366 TATAATTGAT
Statistics
Matches: 37, Mismatches: 2, Indels: 13
0.71 0.04 0.25
Matches are distributed among these distances:
17 9 0.24
18 8 0.22
19 4 0.11
21 4 0.11
22 4 0.11
23 8 0.22
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (17 bp):
TTTTTATTAAAATATTA
Found at i:76189365 original size:18 final size:18
Alignment explanation
Indices: 76189302--76189368 Score: 55
Period size: 18 Copynumber: 3.4 Consensus size: 18
76189292 GACTTAACCC
76189302 TTTTTCTATTAAAATATTA
1 TTTTT-TATTAAAATATTA
* *
76189321 TTTTTAATTTTTAATTATATT-
1 -TTTT--TTATTAA-AATATTA
76189342 TATTTTTATTAAAATATTA
1 T-TTTTTATTAAAATATTA
76189361 TTTTTTAT
1 TTTTTTAT
76189369 AATTGATGTA
Statistics
Matches: 38, Mismatches: 4, Indels: 12
0.70 0.07 0.22
Matches are distributed among these distances:
18 12 0.32
19 7 0.18
20 5 0.13
21 8 0.21
22 6 0.16
ACGTcount: A:0.33, C:0.01, G:0.00, T:0.66
Consensus pattern (18 bp):
TTTTTTATTAAAATATTA
Found at i:76189366 original size:19 final size:19
Alignment explanation
Indices: 76189302--76189366 Score: 60
Period size: 19 Copynumber: 3.3 Consensus size: 19
76189292 GACTTAACCC
*
76189302 TTTTTCTATTAAAATATTA
1 TTTTTTTATTAAAATATTA
* *
76189321 TTTTTAATTTTTAATTATATT-
1 TTTTT--TTATTAA-AATATTA
*
76189342 TATTTTTATTAAAATATTA
1 TTTTTTTATTAAAATATTA
76189361 TTTTTT
1 TTTTTT
76189367 ATAATTGATG
Statistics
Matches: 35, Mismatches: 7, Indels: 8
0.70 0.14 0.16
Matches are distributed among these distances:
18 5 0.14
19 16 0.46
21 9 0.26
22 5 0.14
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (19 bp):
TTTTTTTATTAAAATATTA
Found at i:76195733 original size:17 final size:17
Alignment explanation
Indices: 76195711--76195747 Score: 53
Period size: 14 Copynumber: 2.4 Consensus size: 17
76195701 CAAGATTTAG
76195711 TATTTATTAGTATAATA
1 TATTTATTAGTATAATA
76195728 TA--T-TTAGTATAATA
1 TATTTATTAGTATAATA
76195742 TATTTA
1 TATTTA
76195748 GTATTTATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 6
0.74 0.00 0.26
Matches are distributed among these distances:
14 13 0.76
15 1 0.06
16 1 0.06
17 2 0.12
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (17 bp):
TATTTATTAGTATAATA
Found at i:76195736 original size:14 final size:14
Alignment explanation
Indices: 76195717--76195751 Score: 70
Period size: 14 Copynumber: 2.5 Consensus size: 14
76195707 TTAGTATTTA
76195717 TTAGTATAATATAT
1 TTAGTATAATATAT
76195731 TTAGTATAATATAT
1 TTAGTATAATATAT
76195745 TTAGTAT
1 TTAGTAT
76195752 TTATTAGCAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.40, C:0.00, G:0.09, T:0.51
Consensus pattern (14 bp):
TTAGTATAATATAT
Found at i:76201925 original size:37 final size:37
Alignment explanation
Indices: 76201868--76201940 Score: 128
Period size: 37 Copynumber: 2.0 Consensus size: 37
76201858 GCAAGATGAG
76201868 ATGCTTTCTTTGAGACGATTCACATGTGTTAAAGAGT
1 ATGCTTTCTTTGAGACGATTCACATGTGTTAAAGAGT
* *
76201905 ATGCTTTCTTTGTGATGATTCACATGTGTTAAAGAG
1 ATGCTTTCTTTGAGACGATTCACATGTGTTAAAGAG
76201941 ATGTTTGAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.26, C:0.12, G:0.22, T:0.40
Consensus pattern (37 bp):
ATGCTTTCTTTGAGACGATTCACATGTGTTAAAGAGT
Found at i:76202580 original size:22 final size:22
Alignment explanation
Indices: 76202554--76202608 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
76202544 AAAGTGAATA
* *
76202554 AAACAAATAGAGTAAAGAAAAG
1 AAACAAAAAGAATAAAGAAAAG
*
76202576 AAACAAAAAGAATAGAGAAAAG
1 AAACAAAAAGAATAAAGAAAAG
*
76202598 AGAACAGAAAG
1 A-AACAAAAAG
76202609 CATTCGAGCA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
22 20 0.71
23 8 0.29
ACGTcount: A:0.69, C:0.05, G:0.20, T:0.05
Consensus pattern (22 bp):
AAACAAAAAGAATAAAGAAAAG
Found at i:76204191 original size:20 final size:21
Alignment explanation
Indices: 76204150--76204233 Score: 116
Period size: 21 Copynumber: 4.0 Consensus size: 21
76204140 GTGAAGTATT
76204150 TCAGGCACCTCGTGTGTCGTA
1 TCAGGCACCTCGTGTGTCGTA
76204171 TCAGGCACCTCGTGT-TCGTA
1 TCAGGCACCTCGTGTGTCGTA
*
76204191 TCAGGCACCTCGTGTGTCGTT
1 TCAGGCACCTCGTGTGTCGTA
* * **
76204212 TTAGGCACTTTATGTGTCGTA
1 TCAGGCACCTCGTGTGTCGTA
76204233 T
1 T
76204234 ACTGATCAGT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
20 20 0.36
21 36 0.64
ACGTcount: A:0.14, C:0.25, G:0.26, T:0.35
Consensus pattern (21 bp):
TCAGGCACCTCGTGTGTCGTA
Found at i:76206951 original size:233 final size:233
Alignment explanation
Indices: 76206544--76206969 Score: 690
Period size: 233 Copynumber: 1.8 Consensus size: 233
76206534 TAGACTGTTG
* * * * * *
76206544 GATTTGGGGGAGCTCAATTATAAATAGAGAGTCTTCACCTCAGTTGTAAATCATCTGTTGTTTTT
1 GATTTGGGAGAGATCAACTATAAATAGAGAGCCTCCACCTCAGTTGTAAATCATCTATTGTTTTT
** *
76206609 GTATTCTTTGAGAAAGTGAATACAATTGAGAGAATTTACTCAAACAGTTTTCGTGCATAGTTTTT
66 GTATTCTTTGAGAAAGTGAATACAATTGAGAGAATTTACTCAAACACCTCTCGTGCATAGTTTTT
* *
76206674 TATGGCTATTTTGTTCTCTAAACATTCTTTTGTCTTTGTGTTGCTTTCACTATATAAATTGGTTT
131 TATGGATATTTTGTCCTCTAAACATTCTTTTGTCTTTGTGTTGCTTTCACTATATAAATTGGTTT
76206739 GTATGCTTTTTCTTAAGCATTCTTTAATTTGACAGTTT
196 GTATGCTTTTTCTTAAGCATTCTTTAATTTGACAGTTT
*
76206777 GATTTGGGAGAGATCAACTATAAATAGAGAGCCTCCCCCTCAGTTGTAAATCATCTATTGTTTTT
1 GATTTGGGAGAGATCAACTATAAATAGAGAGCCTCCACCTCAGTTGTAAATCATCTATTGTTTTT
*
76206842 GTATTCTTTGAGAAAGTGAATACAATTGAGAGCATTTACTCAAACACCTCTCGTGCATAGTTTTT
66 GTATTCTTTGAGAAAGTGAATACAATTGAGAGAATTTACTCAAACACCTCTCGTGCATAGTTTTT
* * ***
76206907 TATGGATATTTTGTCCTTTAAGCATTCTTTTGTCTTTGTGTTGCTTTTGTTATATAAATTGGT
131 TATGGATATTTTGTCCTCTAAACATTCTTTTGTCTTTGTGTTGCTTTCACTATATAAATTGGT
76206970 GCCATGGAGG
Statistics
Matches: 175, Mismatches: 18, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
233 175 1.00
ACGTcount: A:0.25, C:0.14, G:0.17, T:0.43
Consensus pattern (233 bp):
GATTTGGGAGAGATCAACTATAAATAGAGAGCCTCCACCTCAGTTGTAAATCATCTATTGTTTTT
GTATTCTTTGAGAAAGTGAATACAATTGAGAGAATTTACTCAAACACCTCTCGTGCATAGTTTTT
TATGGATATTTTGTCCTCTAAACATTCTTTTGTCTTTGTGTTGCTTTCACTATATAAATTGGTTT
GTATGCTTTTTCTTAAGCATTCTTTAATTTGACAGTTT
Found at i:76211150 original size:6 final size:6
Alignment explanation
Indices: 76211111--76211149 Score: 60
Period size: 6 Copynumber: 6.5 Consensus size: 6
76211101 AAACAACCTT
* *
76211111 AAAATC AAAATC AAAATC AAAATC AAATTC AAATTC AAA
1 AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAA
76211150 TGTTGTTTAC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.64, C:0.15, G:0.00, T:0.21
Consensus pattern (6 bp):
AAAATC
Found at i:76238255 original size:31 final size:31
Alignment explanation
Indices: 76238220--76238287 Score: 118
Period size: 31 Copynumber: 2.2 Consensus size: 31
76238210 ATGAAGAAAA
* *
76238220 AAGAGTATTGAAAGAAGCTTGTAAAAAGGAT
1 AAGAGGATTGAAAGAAACTTGTAAAAAGGAT
76238251 AAGAGGATTGAAAGAAACTTGTAAAAAGGAT
1 AAGAGGATTGAAAGAAACTTGTAAAAAGGAT
76238282 AAGAGG
1 AAGAGG
76238288 GCGTTTACAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.50, C:0.03, G:0.28, T:0.19
Consensus pattern (31 bp):
AAGAGGATTGAAAGAAACTTGTAAAAAGGAT
Found at i:76238742 original size:28 final size:28
Alignment explanation
Indices: 76238702--76238759 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
76238692 TAGAAGTGGA
76238702 CAAGGAACATATAGACGAGGCAATCAAT
1 CAAGGAACATATAGACGAGGCAATCAAT
76238730 CAAGGAACATATAGACGAGGCAATCAAT
1 CAAGGAACATATAGACGAGGCAATCAAT
76238758 CA
1 CA
76238760 TATGGTAGAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.47, C:0.19, G:0.21, T:0.14
Consensus pattern (28 bp):
CAAGGAACATATAGACGAGGCAATCAAT
Found at i:76243778 original size:8 final size:8
Alignment explanation
Indices: 76243758--76243790 Score: 59
Period size: 8 Copynumber: 4.2 Consensus size: 8
76243748 TTACAAATTG
76243758 TTAGTGT-
1 TTAGTGTA
76243765 TTAGTGTA
1 TTAGTGTA
76243773 TTAGTGTA
1 TTAGTGTA
76243781 TTAGTGTA
1 TTAGTGTA
76243789 TT
1 TT
76243791 GTGATTTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 7 0.28
8 18 0.72
ACGTcount: A:0.21, C:0.00, G:0.24, T:0.55
Consensus pattern (8 bp):
TTAGTGTA
Found at i:76243862 original size:100 final size:96
Alignment explanation
Indices: 76243752--76243932 Score: 274
Period size: 100 Copynumber: 1.8 Consensus size: 96
76243742 ATTAGGTTAC
*
76243752 AAATTGTTAGTGTTTAGT-GTATTAGTGTATTAGTGTATTGTGATTTTTTTAGTAATAATATATT
1 AAATTGTTAGTGTTTAGTAGT-TTAGTGTATTAGTATATTGTG-TTTTTTT--TAATAATATA-T
**
76243816 TTTTAAAAAATAATTTTATAGTTGATTAGGTTATAT
61 TTAAAAAAAATAATTTTATAGTTGATTAGGTTATAT
*
76243852 AAATTGTTAGTGTTTAGTAGTTTAGTGTATTAGTATATTGTGTTTTTTTTAGTAATATATTTAAA
1 AAATTGTTAGTGTTTAGTAGTTTAGTGTATTAGTATATTGTGTTTTTTTTAATAATATATTTAAA
76243917 AAAAATAATTTTATAG
66 AAAAATAATTTTATAG
76243933 CTATTTTATT
Statistics
Matches: 76, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
96 20 0.26
97 9 0.12
99 7 0.09
100 38 0.50
101 2 0.03
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.51
Consensus pattern (96 bp):
AAATTGTTAGTGTTTAGTAGTTTAGTGTATTAGTATATTGTGTTTTTTTTAATAATATATTTAAA
AAAAATAATTTTATAGTTGATTAGGTTATAT
Found at i:76243944 original size:100 final size:100
Alignment explanation
Indices: 76243752--76244162 Score: 318
Period size: 114 Copynumber: 3.9 Consensus size: 100
76243742 ATTAGGTTAC
*
76243752 AAATTGTTAGTGTTTAGTGTATTAGT-GTATTAGTGTATTGTGATTTTTTTAGTAATAATATATT
1 AAATTGTTAGTGTTTAGTGT-TTAGTGGT-TTAGTGTATTGTGATTTTTTT--TAGTAATATA-T
** *
76243816 TTTTAAAAAATAATTTTATAG----TTGATTAGGTTATAT
61 TTAAAAAAAATAATTTTATAGCTATTTTATTAGGTTATAT
*
76243852 AAATTGTTAGTGTTTAGTAGTTTAGT-GTATTAGTATATTGTG-TTTTTTTTAGTAATATATTTA
1 AAATTGTTAGTGTTTAGT-GTTTAGTGGT-TTAGTGTATTGTGATTTTTTTTAGTAATATATTTA
76243915 AAAAAAATAATTTTATAGCTATTTTATTAGTAATTTAAGATTAGATTATAT
64 AAAAAAATAATTTTATAGCTA---T-TT--T-A-TT-AG----G-TTATAT
* * **
76243966 AAATTGCTAGTGTTTAGTGGTTTAGTGGTTTAATGTATTGTGA-TTTTTTTAGTAATATATTTTT
1 AAATTGTTAGTGTTTAGT-GTTTAGTGGTTTAGTGTATTGTGATTTTTTTTAGTAATATATTTAA
* * *
76244030 AAAAAATATTTTTATAGCTATTTTATTA-GTAATTT
65 AAAAAATAATTTTATAGCTATTTTATTAGGTTATAT
* * *
76244065 AATATTAGGTTATATAAATTGTTAGTGTTTAGTGGTTTAGTGTATTATGATTTTTTATTTAGTAA
1 AA-ATT--GTTA-GT---GT-TTAGTGTTTAGTGGTTTAGTGTATTGTGA-TTTTT-TTTAGTAA
* *
76244130 TGTATTTAAAAAAAATAATTTTATAGTTATTTT
56 TATATTTAAAAAAAATAATTTTATAGCTATTTT
76244163 GTGTTAGTAA
Statistics
Matches: 255, Mismatches: 24, Indels: 55
0.76 0.07 0.16
Matches are distributed among these distances:
96 20 0.08
97 9 0.04
99 13 0.05
100 42 0.16
101 2 0.01
102 3 0.01
103 1 0.00
104 2 0.01
105 1 0.00
106 25 0.10
107 7 0.03
108 7 0.03
109 38 0.15
110 2 0.01
111 1 0.00
113 1 0.00
114 79 0.31
115 2 0.01
ACGTcount: A:0.33, C:0.01, G:0.15, T:0.52
Consensus pattern (100 bp):
AAATTGTTAGTGTTTAGTGTTTAGTGGTTTAGTGTATTGTGATTTTTTTTAGTAATATATTTAAA
AAAAATAATTTTATAGCTATTTTATTAGGTTATAT
Found at i:76243969 original size:114 final size:112
Alignment explanation
Indices: 76243839--76244210 Score: 462
Period size: 114 Copynumber: 3.4 Consensus size: 112
76243829 TTTTATAGTT
*
76243839 GATTAGGTTATATAAATTGTTAGTGTTTAGTAGTTTAGTGTATTAGTATATTGTGTTTTTTTTAG
1 GATTAGATTATATAAATTGTTAGTGTTTAGTAGTTTAGTGTATTA-T-TATTGTGTTTTTTTTAG
76243904 TAATATATTTAAAAAAAATAATTTTATAGCTATTTTATTAGTAATTTAA
64 TAATATATTTAAAAAAAATAATTTTATAGCTATTTTATTAGTAATTTAA
* * *
76243953 GATTAGATTATATAAATTGCTAGTGTTTAGTGGTTTAGTGGT-TTAATGTATTGTGATTTTTTTA
1 GATTAGATTATATAAATTGTTAGTGTTTAGTAGTTTAGT-GTATT-AT-TATTGTGTTTTTTTTA
** *
76244017 GTAATATATTTTTAAAAAATATTTTTATAGCTATTTTATTAGTAATTTAA
63 GTAATATATTTAAAAAAAATAATTTTATAGCTATTTTATTAGTAATTTAA
* * * * *
76244067 TATTAGGTTATATAAATTGTTAGTGTTTAGTGGTTTAGTGTATTATGA-T-T-TTTTATTTAGTA
1 GATTAGATTATATAAATTGTTAGTGTTTAGTAGTTTAGTGTATTATTATTGTGTTTTTTTTAGTA
* * *
76244129 ATGTATTTAAAAAAAATAATTTTATAGTTATTTTGTGTTAGTAATTT--
66 ATATATTTAAAAAAAATAATTTTATAGCTA-TTT-TATTAGTAATTTAA
76244176 -A-T-GA-T-TATAAATTGTTAGTGTTTA-TAGTTTAGTGT
1 GATTAGATTATATAAATTGTTAGTGTTTAGTAGTTTAGTGT
76244211 TTTGTGATTT
Statistics
Matches: 231, Mismatches: 22, Indels: 21
0.84 0.08 0.08
Matches are distributed among these distances:
103 10 0.04
104 19 0.08
105 1 0.00
106 1 0.00
107 1 0.00
108 1 0.00
109 35 0.15
110 4 0.02
111 12 0.05
112 1 0.00
113 4 0.02
114 139 0.60
115 3 0.01
ACGTcount: A:0.32, C:0.01, G:0.15, T:0.52
Consensus pattern (112 bp):
GATTAGATTATATAAATTGTTAGTGTTTAGTAGTTTAGTGTATTATTATTGTGTTTTTTTTAGTA
ATATATTTAAAAAAAATAATTTTATAGCTATTTTATTAGTAATTTAA
Found at i:76244451 original size:26 final size:22
Alignment explanation
Indices: 76244396--76244439 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
76244386 TTAAATTCGA
76244396 ATGTTTTTTATATTTAGATAGT
1 ATGTTTTTTATATTTAGATAGT
76244418 ATGTTTTTTATATTTAGATAGT
1 ATGTTTTTTATATTTAGATAGT
76244440 TTATATGTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.27, C:0.00, G:0.14, T:0.59
Consensus pattern (22 bp):
ATGTTTTTTATATTTAGATAGT
Found at i:76246375 original size:33 final size:33
Alignment explanation
Indices: 76246337--76246432 Score: 95
Period size: 33 Copynumber: 2.9 Consensus size: 33
76246327 TTCCTTCCGG
*
76246337 CCCGTATCCACC-CATGTACTCAACTCCTCCAGA
1 CCCGTATCCACCGC-CGTACTCAACTCCTCCAGA
* * * *
76246370 GCCGTATTCACCGCCGTACTCTACTCCTCCCGA
1 CCCGTATCCACCGCCGTACTCAACTCCTCCAGA
* * * *
76246403 CCCATATCCACCGTCGTATTCTACTCCTCC
1 CCCGTATCCACCGCCGTACTCAACTCCTCC
76246433 CGGCTCAAGT
Statistics
Matches: 52, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
33 51 0.98
34 1 0.02
ACGTcount: A:0.19, C:0.46, G:0.10, T:0.25
Consensus pattern (33 bp):
CCCGTATCCACCGCCGTACTCAACTCCTCCAGA
Found at i:76246433 original size:33 final size:33
Alignment explanation
Indices: 76246352--76246434 Score: 103
Period size: 33 Copynumber: 2.5 Consensus size: 33
76246342 ATCCACCCAT
* * * * *
76246352 GTACTCAACTCCTCCAGAGCCGTATTCACCGCC
1 GTACTCTACTCCTCCCGACCCATATCCACCGCC
*
76246385 GTACTCTACTCCTCCCGACCCATATCCACCGTC
1 GTACTCTACTCCTCCCGACCCATATCCACCGCC
*
76246418 GTATTCTACTCCTCCCG
1 GTACTCTACTCCTCCCG
76246435 GCTCAAGTTC
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 43 1.00
ACGTcount: A:0.18, C:0.45, G:0.12, T:0.25
Consensus pattern (33 bp):
GTACTCTACTCCTCCCGACCCATATCCACCGCC
Found at i:76250101 original size:27 final size:27
Alignment explanation
Indices: 76250035--76250111 Score: 93
Period size: 27 Copynumber: 2.9 Consensus size: 27
76250025 TATGGGCCCC
*
76250035 ACTAGTTGCGCCTACCAAGA-AGGCACA
1 ACTAGTTGCGCCTATC-AGATAGGCACA
* *
76250062 ACTAGTCGCGCCTATCAGATAGGCTCA
1 ACTAGTTGCGCCTATCAGATAGGCACA
* *
76250089 ACTAGTTGAGCCTGTCAGATAGG
1 ACTAGTTGCGCCTATCAGATAGG
76250112 TGCAACATGT
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
26 3 0.07
27 40 0.93
ACGTcount: A:0.29, C:0.26, G:0.25, T:0.21
Consensus pattern (27 bp):
ACTAGTTGCGCCTATCAGATAGGCACA
Found at i:76251884 original size:26 final size:26
Alignment explanation
Indices: 76251848--76251899 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
76251838 ATGCAAACTT
76251848 TGGGGCAAGTTGTGAATCATCTACAA
1 TGGGGCAAGTTGTGAATCATCTACAA
76251874 TGGGGCAAGTTGTGAATCATCTACAA
1 TGGGGCAAGTTGTGAATCATCTACAA
76251900 GGGAAAGGAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.27
Consensus pattern (26 bp):
TGGGGCAAGTTGTGAATCATCTACAA
Found at i:76252071 original size:223 final size:223
Alignment explanation
Indices: 76251675--76252103 Score: 750
Period size: 223 Copynumber: 1.9 Consensus size: 223
76251665 ATACAAGGAA
*
76251675 AAGGGAAAGGAGTTGTGAGGCAATCAACGCTAGAAACAATTTATCTAGTGCAACTTCAAATCAAA
1 AAGGGAAAGGAGTTGTGAGACAATCAACGCTAGAAACAATTTATCTAGTGCAACTTCAAATCAAA
*
76251740 ATGTAATTAAGAGATTTTTATTAAGGGATGCATATTCTTTAGGGACACTTATGATGGATAAACAT
66 ATGTAATTAAGAGATTTTTATTAAGGGATGCATATTCTTTAAGGACACTTATGATGGATAAACAT
* *
76251805 CTACTAGATGTTGAGCTAGGCTCTCACAATATTATGCAAACTTTGGGGCAAGTTGTGAATCATCT
131 CTACTAGATGTTGAACTAGGCTCTAACAATATTATGCAAACTTTGGGGCAAGTTGTGAATCATCT
76251870 ACAATGGGGCAAGTTGTGAATCATCTAC
196 ACAATGGGGCAAGTTGTGAATCATCTAC
* *
76251898 AAGGGAAAGGAGTTGTGAGACAATCAATGCTCGAAACAATTTATCTAGTGCAACTTCAAATCAAA
1 AAGGGAAAGGAGTTGTGAGACAATCAACGCTAGAAACAATTTATCTAGTGCAACTTCAAATCAAA
*
76251963 ATGTAATTAAGAGATTTTTATTAAGGGATGCATATTCTTTAAGGACACTTATGATGGATTAACAT
66 ATGTAATTAAGAGATTTTTATTAAGGGATGCATATTCTTTAAGGACACTTATGATGGATAAACAT
* * * *
76252028 CTACTATATGTTGAACTGGGCTCTAACAATTTTATGTAAACTTTGGGGCAAGTTGTGAATCATCT
131 CTACTAGATGTTGAACTAGGCTCTAACAATATTATGCAAACTTTGGGGCAAGTTGTGAATCATCT
*
76252093 ACAATGTGGCA
196 ACAATGGGGCA
76252104 CCTTACACCC
Statistics
Matches: 194, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
223 194 1.00
ACGTcount: A:0.35, C:0.14, G:0.21, T:0.31
Consensus pattern (223 bp):
AAGGGAAAGGAGTTGTGAGACAATCAACGCTAGAAACAATTTATCTAGTGCAACTTCAAATCAAA
ATGTAATTAAGAGATTTTTATTAAGGGATGCATATTCTTTAAGGACACTTATGATGGATAAACAT
CTACTAGATGTTGAACTAGGCTCTAACAATATTATGCAAACTTTGGGGCAAGTTGTGAATCATCT
ACAATGGGGCAAGTTGTGAATCATCTAC
Found at i:76257328 original size:60 final size:60
Alignment explanation
Indices: 76257227--76257342 Score: 160
Period size: 60 Copynumber: 1.9 Consensus size: 60
76257217 AATTATCTTG
*** * *
76257227 GTCTCAATGATAATCTGAATGGTTAGGATGTTAATCTTCCTATTCGTAAGGTGATACCTA
1 GTCTCAATGATAATCTGAATGGTTAGGACACTAATCCTCCTATTCATAAGGTGATACCTA
* * *
76257287 GTCTGAATGATAATTTGAATGGTTAGGACACTAATCCTCCTATTCATAGGGTGATA
1 GTCTCAATGATAATCTGAATGGTTAGGACACTAATCCTCCTATTCATAAGGTGATA
76257343 TATGACCAAA
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
60 48 1.00
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.35
Consensus pattern (60 bp):
GTCTCAATGATAATCTGAATGGTTAGGACACTAATCCTCCTATTCATAAGGTGATACCTA
Found at i:76259854 original size:23 final size:24
Alignment explanation
Indices: 76259815--76259869 Score: 78
Period size: 23 Copynumber: 2.3 Consensus size: 24
76259805 CATACATTTG
*
76259815 TAATAATTATTACTAAAATATAATA
1 TAATAA-TATTACTAAAATATAACA
76259840 TAATAATA-TACTAAAATATAACA
1 TAATAATATTACTAAAATATAACA
76259863 TAA-AATA
1 TAATAATA
76259870 AAAGAAAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
22 4 0.14
23 17 0.59
24 2 0.07
25 6 0.21
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (24 bp):
TAATAATATTACTAAAATATAACA
Found at i:76259883 original size:11 final size:11
Alignment explanation
Indices: 76259864--76259952 Score: 61
Period size: 11 Copynumber: 7.3 Consensus size: 11
76259854 AATATAACAT
*
76259864 AAAATAAAAGA
1 AAAAAAAAAGA
76259875 AAAAAAAAAGA
1 AAAAAAAAAGA
*
76259886 AAAAAAATAGA
1 AAAAAAAAAGA
*
76259897 AAACAAACAGAGA
1 AAA-AAA-AAAGA
76259910 AAGAAACGAAAAGGA
1 AA-AAA--AAAA-GA
*
76259925 AGAAAAAAAGA
1 AAAAAAAAAGA
76259936 AGGAAAGAAAAAGA
1 A--AAA-AAAAAGA
76259950 AAA
1 AAA
76259953 TGGAAAATTG
Statistics
Matches: 63, Mismatches: 6, Indels: 17
0.73 0.07 0.20
Matches are distributed among these distances:
11 26 0.41
12 9 0.14
13 10 0.16
14 14 0.22
15 4 0.06
ACGTcount: A:0.78, C:0.03, G:0.17, T:0.02
Consensus pattern (11 bp):
AAAAAAAAAGA
Found at i:76268931 original size:15 final size:15
Alignment explanation
Indices: 76268911--76268975 Score: 71
Period size: 15 Copynumber: 4.4 Consensus size: 15
76268901 GTATCTTGGG
*
76268911 TTTCTTTATTCTCGA
1 TTTCTTTATTCTGGA
*
76268926 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
*
76268941 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
76268956 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
76268970 TTTCTT
1 TTTCTT
76268976 GTTATCTTTA
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
14 10 0.24
15 30 0.71
16 2 0.05
ACGTcount: A:0.09, C:0.17, G:0.12, T:0.62
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:76268943 original size:30 final size:30
Alignment explanation
Indices: 76268907--76268975 Score: 88
Period size: 30 Copynumber: 2.3 Consensus size: 30
76268897 TATCGTATCT
76268907 TGGGTTTCTTTAT-TCTCGATTTCTTTATTC
1 TGGGTTTCTTTATCT-TCGATTTCTTTATTC
* *
76268937 TGGGTTTCTCTATCTTGGATTTCTTTATTC
1 TGGGTTTCTTTATCTTCGATTTCTTTATTC
*
76268967 -GGTTTTCTT
1 TGGGTTTCTT
76268976 GTTATCTTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
29 7 0.21
30 26 0.76
31 1 0.03
ACGTcount: A:0.09, C:0.16, G:0.16, T:0.59
Consensus pattern (30 bp):
TGGGTTTCTTTATCTTCGATTTCTTTATTC
Found at i:76276008 original size:86 final size:85
Alignment explanation
Indices: 76275848--76276011 Score: 215
Period size: 85 Copynumber: 1.9 Consensus size: 85
76275838 CATAAGCTCG
* * * **
76275848 TACGATGCCAATATCCTAGACTTGGTCTTACATGTAATCAAATATCAATGCTATTGTCCCAGAAA
1 TACGATGCCAATATCCTAGACATGGTCTTACACGTAATCAAATATCAATGCCAACGTCCCAGAAA
76275913 GGGTCTTACACGAAATCATA
66 GGGTCTTACACGAAATCATA
* *
76275933 TACGATGTCAATGTCCTAGACATGGTCTTACACGTAACTCACAA-ATCAATGCCAACGTCCCAG-
1 TACGATGCCAATATCCTAGACATGGTCTTACACGTAA-TCA-AATATCAATGCCAACGTCCCAGA
*
76275996 ACGTGGTCTTACACGA
64 AAG-GGTCTTACACGA
76276012 TAACACATAT
Statistics
Matches: 68, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
85 35 0.51
86 31 0.46
87 2 0.03
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.27
Consensus pattern (85 bp):
TACGATGCCAATATCCTAGACATGGTCTTACACGTAATCAAATATCAATGCCAACGTCCCAGAAA
GGGTCTTACACGAAATCATA
Found at i:76280858 original size:35 final size:35
Alignment explanation
Indices: 76280819--76280919 Score: 157
Period size: 35 Copynumber: 2.9 Consensus size: 35
76280809 AATCCAACAG
76280819 AAACACGCCAATGCTCATAAGAGCTAGTCCATCCA
1 AAACACGCCAATGCTCATAAGAGCTAGTCCATCCA
* **
76280854 AAACACGCCAATGCTCACAAGAGCTAGTCCATCTG
1 AAACACGCCAATGCTCATAAGAGCTAGTCCATCCA
* *
76280889 AAACACGCTAATGCTCATAAGAGCTAATCCA
1 AAACACGCCAATGCTCATAAGAGCTAGTCCA
76280920 ATTAAACACG
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 60 1.00
ACGTcount: A:0.38, C:0.30, G:0.15, T:0.18
Consensus pattern (35 bp):
AAACACGCCAATGCTCATAAGAGCTAGTCCATCCA
Found at i:76281393 original size:10 final size:10
Alignment explanation
Indices: 76281374--76281406 Score: 59
Period size: 10 Copynumber: 3.4 Consensus size: 10
76281364 ATATCATTCC
76281374 CACA-TCAAA
1 CACATTCAAA
76281383 CACATTCAAA
1 CACATTCAAA
76281393 CACATTCAAA
1 CACATTCAAA
76281403 CACA
1 CACA
76281407 CTCTAAAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.17
10 19 0.83
ACGTcount: A:0.52, C:0.33, G:0.00, T:0.15
Consensus pattern (10 bp):
CACATTCAAA
Found at i:76283247 original size:91 final size:92
Alignment explanation
Indices: 76282994--76283298 Score: 285
Period size: 93 Copynumber: 3.3 Consensus size: 92
76282984 TGATTTGTGC
* * **
76282994 GCCAATGTAAGACGTATCTAGGACACATATCGGCTAAGAGTTGTGCTAGTGTAAGACA-AGTCTG
1 GCCAATGTAAGACGTGTCTGGGACACGCATCGGCTAAGAGTTGTGCTAGTGTAAGACATA-TCTG
* *
76283058 GGACACGCATCAGCACGCATAAATGAGA
65 GGACATGCATCAACACGCATAAATGAGA
* * * * ** * * * *
76283086 GCCAATGTAAAACCATGTCTGGGACATGGCATCGACGCAGAGATGAGTTCCAGAGTAAGACATAT
1 GCCAATGTAAGA-CGTGTCTGGGACA-CGCATCGGCTAAGAG-T-TGTGCTAGTGTAAGACATAT
* * *
76283151 TTGGGACATGCATCAAC-CTCA-ACAGA-GATA
62 CTGGGACATGCATCAACACGCATA-A-ATGAGA
*
76283181 GCCAGTGTAAGACGTGTCTGGGACACGCATCGGCTAAGAGTTGTGCTAGTGTAAGACATATCTGG
1 GCCAATGTAAGACGTGTCTGGGACACGCATCGGCTAAGAGTTGTGCTAGTGTAAGACATATCTGG
* *
76283246 GACATGCATCAGCACGCATATATGAGA
66 GACATGCATCAACACGCATAAATGAGA
* * *
76283273 GCTAGTGTAAGACCATGTCTGGGACA
1 GCCAATGTAAGA-CGTGTCTGGGACA
76283299 TGGCATTGAC
Statistics
Matches: 165, Mismatches: 37, Indels: 21
0.74 0.17 0.09
Matches are distributed among these distances:
91 32 0.19
92 29 0.18
93 34 0.21
94 22 0.13
95 18 0.11
96 29 0.18
97 1 0.01
ACGTcount: A:0.32, C:0.20, G:0.27, T:0.21
Consensus pattern (92 bp):
GCCAATGTAAGACGTGTCTGGGACACGCATCGGCTAAGAGTTGTGCTAGTGTAAGACATATCTGG
GACATGCATCAACACGCATAAATGAGA
Found at i:76289307 original size:50 final size:49
Alignment explanation
Indices: 76289196--76289325 Score: 170
Period size: 50 Copynumber: 2.6 Consensus size: 49
76289186 CTAGTACGCA
* * * ** *
76289196 TAGTAGCCTCCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCCGATACACG
*
76289245 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AACCATCCGATACACG
* *
76289295 TAGTAGCTTGCACTAAGTACTACACACGTGA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA
76289326 TTGAAGTTAT
Statistics
Matches: 71, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
49 30 0.42
50 41 0.58
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCCGATACACG
Found at i:76293568 original size:47 final size:47
Alignment explanation
Indices: 76293421--76293688 Score: 185
Period size: 47 Copynumber: 5.7 Consensus size: 47
76293411 TGATCTGTGC
* * *
76293421 GCCAATGTAAGACGTGTCTGGGACATGCATCAACACGCATAA-ATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAAC-CGCA-AAGATGATA
** *
76293469 GCCAGTGTAAGACCATGTCTGGGACATGGCATC-GGCGCAGAGATGAGT-
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAACCGCAAAGATGA-TA
* *
76293517 GCCAGAGTAAGACATGTCTGGGACATGCATCAACCTCAACAGA-GATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAACCGCAA-AGATGATA
* * * ** *
76293564 GCCAGTGTAGGACATGTCTGGGGCACGCAT---GGGCTAAGAGTTG-T-
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAACCGC-AA-AGATGATA
* * * * * *
76293608 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCATGCATATATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAAC-CGCAAAGATGATA
*
76293656 GCCAGTGTAAGACCATGTCTGGTACATGGCATC
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATC
76293689 GGAAATATAT
Statistics
Matches: 171, Mismatches: 32, Indels: 32
0.73 0.14 0.14
Matches are distributed among these distances:
44 27 0.16
45 5 0.03
46 10 0.06
47 47 0.27
48 46 0.27
49 26 0.15
50 10 0.06
ACGTcount: A:0.29, C:0.21, G:0.29, T:0.21
Consensus pattern (47 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCAACCGCAAAGATGATA
Found at i:76293633 original size:91 final size:96
Alignment explanation
Indices: 76293421--76293690 Score: 311
Period size: 91 Copynumber: 2.9 Consensus size: 96
76293411 TGATCTGTGC
* *
76293421 GCCAATGTAAGACGTGTCTGGGACATGCATCAACACGCATAAATGAGAGCCAGTGTAAGACCATG
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAACACGCATAAATGAGAGCCAGTGTAAGACCATG
* *
76293486 TCTGGGACATGGCATCGGCGCAGAGATGAGT
66 TCTGGGACATCGCATCGGCGAAGAGATGAGT
* * * *
76293517 GCCAGAGTAAGACATGTCTGGGACATGCATCAAC-CTCA-ACAGA-GATAGCCAGTGTAGGA-CA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAACACGCATA-A-ATGAGAGCCAGTGTAAGACCA
* * * *
76293578 TGTCTGGGGCA-CGCATGGGCTAAGAG-T-TGT
64 TGTCTGGGACATCGCATCGGCGAAGAGATGAGT
* * * *
76293608 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCATGCATATATGAGAGCCAGTGTAAGACCATG
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAACACGCATAAATGAGAGCCAGTGTAAGACCATG
* *
76293673 TCTGGTACATGGCATCGG
66 TCTGGGACATCGCATCGG
76293691 AAATATATCC
Statistics
Matches: 143, Mismatches: 24, Indels: 16
0.78 0.13 0.09
Matches are distributed among these distances:
91 34 0.24
92 17 0.12
93 23 0.16
94 19 0.13
95 18 0.13
96 32 0.22
ACGTcount: A:0.29, C:0.20, G:0.30, T:0.21
Consensus pattern (96 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCAACACGCATAAATGAGAGCCAGTGTAAGACCATG
TCTGGGACATCGCATCGGCGAAGAGATGAGT
Found at i:76301707 original size:89 final size:89
Alignment explanation
Indices: 76301603--76302025 Score: 420
Period size: 89 Copynumber: 5.0 Consensus size: 89
76301593 ATTTTTTTCC
* *
76301603 AAATTAAAAGTAAATAAAATCCATTTCAGGATTTATTCCCGCTGATT-AATGGATTTTATTCCAT
1 AAATTAAATGTAAATAAAATCCATTTCGGGATTTATTCCCGCT-ATTCAATGGATTTTATTCCAT
*
76301667 TATTTTGATTTTATTTCCAAATGGG
65 TATTTTGATTTTATTTCCAAACGGG
* ** * * *
76301692 AAATTAAATGTAAATAAATTCTGTTTCGGGATTTATTCTCGCTTTTCAATGGATTTTATACCATT
1 AAATTAAATGTAAATAAAATCCATTTCGGGATTTATTCCCGCTATTCAATGGATTTTATTCCATT
76301757 ATTTTGATTTTATTTCCAAACGGG
66 ATTTTGATTTTATTTCCAAACGGG
* *** * * *
76301781 GAATT-AATGGTAAATAAAATTTGTTTCGGGATTTATTCCCACCATTCAACGGATTTTATTCCAT
1 AAATTAAAT-GTAAATAAAATCCATTTCGGGATTTATTCCCGCTATTCAATGGATTTTATTCCAT
* *
76301845 CATTTAGATTTTATTTCCAAACGGG
65 TATTTTGATTTTATTTCCAAACGGG
* * * *
76301870 AAATTAAAGGTAAATAAAATCCATTTCGGGATTGATTCCCG-TCCTTCAA-CGATTTTATTCCA-
1 AAATTAAATGTAAATAAAATCCATTTCGGGATTTATTCCCGCT-ATTCAATGGATTTTATTCCAT
76301932 -A-----ATTTTATTTCC-AA----
65 TATTTTGATTTTATTTCCAAACGGG
* * * * * *
76301946 AAA-TGAGT-AAAATAAAATCCATTTCGAGATTGATTCCCGCCATTCAAT-GATTTTATTCCA--
1 AAATTAAATGTAAATAAAATCCATTTCGGGATTTATTCCCGCTATTCAATGGATTTTATTCCATT
76302006 ATTTTGATTTTATTTCCAAA
66 ATTTTGATTTTATTTCCAAA
76302026 ACTGAGTATT
Statistics
Matches: 285, Mismatches: 37, Indels: 33
0.80 0.10 0.09
Matches are distributed among these distances:
74 47 0.16
75 2 0.01
76 3 0.01
79 11 0.04
80 4 0.01
81 11 0.04
86 1 0.00
88 17 0.06
89 187 0.66
90 2 0.01
ACGTcount: A:0.32, C:0.15, G:0.12, T:0.40
Consensus pattern (89 bp):
AAATTAAATGTAAATAAAATCCATTTCGGGATTTATTCCCGCTATTCAATGGATTTTATTCCATT
ATTTTGATTTTATTTCCAAACGGG
Found at i:76305722 original size:20 final size:20
Alignment explanation
Indices: 76305692--76305738 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
76305682 ATATATCCTG
76305692 AATTG-TTTGATTCTAATCA
1 AATTGATTTGATTCTAATCA
* *
76305711 ATTTGATTTGATTTTAATCA
1 AATTGATTTGATTCTAATCA
76305731 AATTGATT
1 AATTGATT
76305739 CAATTGCCCC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
19 4 0.17
20 20 0.83
ACGTcount: A:0.32, C:0.06, G:0.11, T:0.51
Consensus pattern (20 bp):
AATTGATTTGATTCTAATCA
Found at i:76311039 original size:17 final size:18
Alignment explanation
Indices: 76311017--76311054 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
76311007 GAAAGTATGA
*
76311017 CATTTCACAATATTT-GT
1 CATTTCAAAATATTTAGT
*
76311034 CATTTCAAAATCTTTAGT
1 CATTTCAAAATATTTAGT
76311052 CAT
1 CAT
76311055 AGTTTTCTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.32, C:0.18, G:0.05, T:0.45
Consensus pattern (18 bp):
CATTTCAAAATATTTAGT
Found at i:76313114 original size:21 final size:21
Alignment explanation
Indices: 76313090--76313137 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
76313080 GTAACTAGGT
* *
76313090 CACACGGGTGTGTGTCTCCTC
1 CACACGGGCGTCTGTCTCCTC
**
76313111 CACACATGCGTCTGTCTCCTC
1 CACACGGGCGTCTGTCTCCTC
76313132 CACACG
1 CACACG
76313138 AGCATGTGCA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.15, C:0.40, G:0.21, T:0.25
Consensus pattern (21 bp):
CACACGGGCGTCTGTCTCCTC
Found at i:76314868 original size:190 final size:190
Alignment explanation
Indices: 76314545--76314892 Score: 529
Period size: 190 Copynumber: 1.8 Consensus size: 190
76314535 GGGTGTTACA
* *
76314545 AGTTGTTGCAACAGGAGTTAATGGAGGGCTTTGATTGTAGCCTTATTCTAGATTGATGAAGTCGT
1 AGTTGTTGCAACAGGACTTAATGGAGGGCTTTGATTGCAGCCTTATTCTAGATTGATGAAGTCGT
** * * * *
76314610 CGTCTTTTTTATCACTGAAAAATAATCTTTCTATTTTCTTTTCCTTTTCGCTCCATCTCTAGTAA
66 CGTCTTTGCTATCACTGAAAAATAATCTTTCAATTTTCTTTTCCTTTTCACTCCATCTCCAATAA
**
76314675 TCAGCTTCATTGAATTCTACATCTCTTACTATTGTTGATTGGTGATGATAATGTTGTAGG
131 TCAGCTTCATCAAATTCTACATCTCTTACTATTGTTGATTGGTGATGATAATGTTGTAGG
** * * *
76314735 AGTTGTTGCAACAGGACTTGGTGGAGGGCTTTGATTGCCA-CCTTGTTCTTGATTGATGAAGTTG
1 AGTTGTTGCAACAGGACTTAATGGAGGGCTTTGATTG-CAGCCTTATTCTAGATTGATGAAGTCG
76314799 TCGTCTTTGCTATCACTGAAAAATAATCTTTCAATTTTCTTTT-CTTCTTCACTCCATCTCCAAT
65 TCGTCTTTGCTATCACTGAAAAATAATCTTTCAATTTTCTTTTCCTT-TTCACTCCATCTCCAAT
76314863 AATCAGCTTCATCAAATTCTACATCTCTTA
129 AATCAGCTTCATCAAATTCTACATCTCTTA
76314893 AAATAATAAC
Statistics
Matches: 141, Mismatches: 15, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
189 3 0.02
190 137 0.97
191 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.17, T:0.41
Consensus pattern (190 bp):
AGTTGTTGCAACAGGACTTAATGGAGGGCTTTGATTGCAGCCTTATTCTAGATTGATGAAGTCGT
CGTCTTTGCTATCACTGAAAAATAATCTTTCAATTTTCTTTTCCTTTTCACTCCATCTCCAATAA
TCAGCTTCATCAAATTCTACATCTCTTACTATTGTTGATTGGTGATGATAATGTTGTAGG
Found at i:76322642 original size:27 final size:27
Alignment explanation
Indices: 76322604--76322854 Score: 322
Period size: 27 Copynumber: 9.3 Consensus size: 27
76322594 ATTGTTTTAT
* *
76322604 CTTATATGGTAAAATGATTGTTTTGCC
1 CTTATGTGGTAAAATGACTGTTTTGCC
* * *
76322631 CTTATGTGGTAAAATAATTATTTTGCC
1 CTTATGTGGTAAAATGACTGTTTTGCC
** *
76322658 CTTATAAGGTAAAATGACCGTTTTGCC
1 CTTATGTGGTAAAATGACTGTTTTGCC
* *
76322685 CTTATATGGTAAAATGACTGTTTTTCC
1 CTTATGTGGTAAAATGACTGTTTTGCC
* *
76322712 CTTATGAGGTAAAATGACTGATTTGCC
1 CTTATGTGGTAAAATGACTGTTTTGCC
*
76322739 CTTATGAGGTAAAATGACTGTTTTGCC
1 CTTATGTGGTAAAATGACTGTTTTGCC
*
76322766 CTTATGTGGTAAAATGATTGTTTTGCC
1 CTTATGTGGTAAAATGACTGTTTTGCC
*
76322793 CTTATGAGGTAAAATGACTGTTTTGCC
1 CTTATGTGGTAAAATGACTGTTTTGCC
* * * *
76322820 CTTATATGGTAAGATGACTGATATGCC
1 CTTATGTGGTAAAATGACTGTTTTGCC
*
76322847 CATATGTG
1 CTTATGTG
76322855 ATGTATGTTT
Statistics
Matches: 196, Mismatches: 28, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 196 1.00
ACGTcount: A:0.27, C:0.14, G:0.20, T:0.39
Consensus pattern (27 bp):
CTTATGTGGTAAAATGACTGTTTTGCC
Found at i:76322847 original size:81 final size:80
Alignment explanation
Indices: 76322604--76322839 Score: 355
Period size: 81 Copynumber: 2.9 Consensus size: 80
76322594 ATTGTTTTAT
* * * *
76322604 CTTATATGGTAAAATGATTGTTTTGCCCTTATGTGGTAAAATAATTATTTTGCCCTTATAAGGTA
1 CTTATATGGTAAAATGATTGTTTTGCCCTTATGAGGTAAAATGACTGTTTTGCCCTTAT-AGGTA
*
76322669 AAATGACCGTTTTGCC
65 AAATGACTGTTTTGCC
* * *
76322685 CTTATATGGTAAAATGACTGTTTTTCCCTTATGAGGTAAAATGACTGATTTGCCCTTATGAGGTA
1 CTTATATGGTAAAATGATTGTTTTGCCCTTATGAGGTAAAATGACTGTTTTGCCCTTAT-AGGTA
76322750 AAATGACTGTTTTGCC
65 AAATGACTGTTTTGCC
*
76322766 CTTATGTGGTAAAATGATTGTTTTGCCCTTATGAGGTAAAATGACTGTTTTGCCCTTATATGGTA
1 CTTATATGGTAAAATGATTGTTTTGCCCTTATGAGGTAAAATGACTGTTTTGCCCTTATA-GGTA
*
76322831 AGATGACTG
65 AAATGACTG
76322840 ATATGCCCAT
Statistics
Matches: 140, Mismatches: 14, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
80 1 0.01
81 139 0.99
ACGTcount: A:0.27, C:0.14, G:0.20, T:0.39
Consensus pattern (80 bp):
CTTATATGGTAAAATGATTGTTTTGCCCTTATGAGGTAAAATGACTGTTTTGCCCTTATAGGTAA
AATGACTGTTTTGCC
Found at i:76331177 original size:15 final size:16
Alignment explanation
Indices: 76331157--76331189 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
76331147 ATATATTTTT
76331157 TTATTTT-ATTTTTAA
1 TTATTTTAATTTTTAA
76331172 TTATTTTAAATTTTTAA
1 TTATTTT-AATTTTTAA
76331189 T
1 T
76331190 ATAACTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTATTTTAATTTTTAA
Found at i:76331262 original size:21 final size:22
Alignment explanation
Indices: 76331236--76331294 Score: 61
Period size: 21 Copynumber: 2.8 Consensus size: 22
76331226 GTTTTAAGAA
*
76331236 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
*
76331257 TTGTTTTAATATTTGTTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
76331279 GT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
76331295 GATTTATTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
20 6 0.19
21 16 0.50
22 10 0.31
ACGTcount: A:0.22, C:0.00, G:0.08, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:76331309 original size:26 final size:24
Alignment explanation
Indices: 76331265--76331313 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 24
76331255 ATTTGTTTTA
*
76331265 ATATTTGTTTTTATGTTTTTAAAT
1 ATATTTGTTTTTATATTTTTAAAT
76331289 ATATTTGATTTATTATATTTTTAAA
1 ATATTTG-TTT-TTATATTTTTAAA
76331314 CTTTTTTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.32
25 3 0.14
26 12 0.55
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (24 bp):
ATATTTGTTTTTATATTTTTAAAT
Found at i:76338051 original size:17 final size:17
Alignment explanation
Indices: 76338025--76338063 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
76338015 CAAAATTTCC
*
76338025 TTATTCTATTTCATTTT
1 TTATTCTATTTCAATTT
*
76338042 TTATTTTATTTCAATTT
1 TTATTCTATTTCAATTT
76338059 TTATT
1 TTATT
76338064 ATTTAACAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.21, C:0.08, G:0.00, T:0.72
Consensus pattern (17 bp):
TTATTCTATTTCAATTT
Found at i:76342477 original size:123 final size:127
Alignment explanation
Indices: 76342253--76342512 Score: 309
Period size: 123 Copynumber: 2.1 Consensus size: 127
76342243 GAGTATGAGC
*
76342253 TTGCCTTCTATTTCATTTAAAACTCATGTATTTAAATTTTAAAAAGGATATTCAAATATTTAGAT
1 TTGCCTT-TATTTCATTTAAAACTCATGTATTTAAATTTTAAAAAGGATAATCAAATATTTAGAT
* *
76342318 CAAACAGAAAATCGAAAACCAGTTCGTTAAAGCACGACTACTCGAATTTCTAAATA-AGAAATA
65 CAAACAGAAAATCGAAAACCAGTACGTTAAAGCACGACTACTCGAATTTCCAAATACAG-AATA
* * **
76342381 TTGCCTTTATTTTATTTAAAACTCATGTATTTTAA-TTT-AAAAGGATAATC-GGT-TTTAGATC
1 TTGCCTTTATTTCATTTAAAACTCATGTATTTAAATTTTAAAAAGGATAATCAAATATTTAGATC
* * * ** * *
76342442 AAAC-GAAAAATCGAAACCCAGTACGTT-CAGACACGATTTTTCGAATTTCCAAGTACCGAATA
66 AAACAG-AAAATCGAAAACCAGTACGTTAAAG-CACGACTACTCGAATTTCCAAATACAGAATA
76342504 TTGCCTTTA
1 TTGCCTTTA
76342513 CTTGAAAAAT
Statistics
Matches: 115, Mismatches: 14, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
122 3 0.03
123 63 0.55
124 2 0.02
125 11 0.10
126 3 0.03
127 26 0.23
128 7 0.06
ACGTcount: A:0.38, C:0.16, G:0.12, T:0.35
Consensus pattern (127 bp):
TTGCCTTTATTTCATTTAAAACTCATGTATTTAAATTTTAAAAAGGATAATCAAATATTTAGATC
AAACAGAAAATCGAAAACCAGTACGTTAAAGCACGACTACTCGAATTTCCAAATACAGAATA
Found at i:76342764 original size:3 final size:3
Alignment explanation
Indices: 76342758--76343052 Score: 96
Period size: 3 Copynumber: 97.0 Consensus size: 3
76342748 ATAATAGTGC
**
76342758 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -ACA -AA CGGCA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA --TAA
* * * * *
76342804 TAT TAA TAA TAA TAA TAAA TAA TGA CAA TAGA AAA TAA TGA TAA TAA
1 TAA TAA TAA TAA TAA T-AA TAA TAA TAA TA-A TAA TAA TAA TAA TAA
* * *
76342851 TAA TGGAA GTAA TGAA -AA TAA TAA TAGA -AA CAA TAG TAA TAA -AG
1 TAA T--AA -TAA T-AA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA
* * * *
76342895 TAA TAA TAA -AA TAGA AAA TAA CAA TGA TACA TTAA TAA TAA T-A TATG
1 TAA TAA TAA TAA TA-A TAA TAA TAA TAA TA-A -TAA TAA TAA TAA TA-A
** * * * *
76342942 TGC TAA TAA CAA TAA TAA T-A TAA -AA AAA TAA -AA TAA TAC T-A TAT
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * * *
76342986 TGA TAA AAA TAA TAA TAG TAGGT TAA TAA TAA TAG TAA TAA AAA GGTAA
1 TAA TAA TAA TAA TAA TAA TA--A TAA TAA TAA TAA TAA TAA TAA --TAA
76343035 -AA -AA TAA TAA -AA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA
76343053 AAACACTATT
Statistics
Matches: 215, Mismatches: 47, Indels: 60
0.67 0.15 0.19
Matches are distributed among these distances:
2 23 0.11
3 167 0.78
4 15 0.07
5 9 0.04
6 1 0.00
ACGTcount: A:0.61, C:0.03, G:0.08, T:0.27
Consensus pattern (3 bp):
TAA
Found at i:76342833 original size:16 final size:16
Alignment explanation
Indices: 76342814--76342853 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
76342804 TATTAATAAT
76342814 AATAATAAATAATGAC
1 AATAATAAATAATGAC
*
76342830 AATAGA-AAATAATGAT
1 AATA-ATAAATAATGAC
76342846 AATAATAA
1 AATAATAA
76342854 TGGAAGTAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
15 1 0.05
16 19 0.90
17 1 0.05
ACGTcount: A:0.65, C:0.03, G:0.07, T:0.25
Consensus pattern (16 bp):
AATAATAAATAATGAC
Found at i:76343462 original size:24 final size:26
Alignment explanation
Indices: 76343435--76343487 Score: 74
Period size: 24 Copynumber: 2.1 Consensus size: 26
76343425 ATCTCGTGTA
*
76343435 TTTCTTGTATT-GAAAGTCTCTC-TT
1 TTTCTTGTATTCGAAACTCTCTCATT
*
76343459 TTTCTTGTATTCGAATCTCTCTCATT
1 TTTCTTGTATTCGAAACTCTCTCATT
76343485 TTT
1 TTT
76343488 TCTCCAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 11 0.44
25 9 0.36
26 5 0.20
ACGTcount: A:0.15, C:0.19, G:0.09, T:0.57
Consensus pattern (26 bp):
TTTCTTGTATTCGAAACTCTCTCATT
Found at i:76343486 original size:25 final size:24
Alignment explanation
Indices: 76343435--76343486 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 24
76343425 ATCTCGTGTA
* *
76343435 TTTCTTGTATTGAAAGTCTCTCTT
1 TTTCTTGTATTGAAACTCTCTCAT
*
76343459 TTTCTTGTATTCGAATCTCTCTCAT
1 TTTCTTGTATT-GAAACTCTCTCAT
76343484 TTT
1 TTT
76343487 TTCTCCAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 11 0.46
25 13 0.54
ACGTcount: A:0.15, C:0.19, G:0.10, T:0.56
Consensus pattern (24 bp):
TTTCTTGTATTGAAACTCTCTCAT
Found at i:76352923 original size:57 final size:57
Alignment explanation
Indices: 76352832--76352947 Score: 144
Period size: 57 Copynumber: 2.0 Consensus size: 57
76352822 TTAGATTCGT
* * * **
76352832 TTACTAATGTAAGTTATCTTTTCGTATTATGATCCAACCACGTAATACCGCTTAGTA
1 TTACTAATATAAGTTACCTTTTCGTATTACGATCCAACCACGTAATACCAATTAGTA
* * *
76352889 TTACTAATATATGTTACC-TTTCTGTATTACGATCCGACCGCGTAATACCAATTAGTA
1 TTACTAATATAAGTTACCTTTTC-GTATTACGATCCAACCACGTAATACCAATTAGTA
76352946 TT
1 TT
76352948 CATTAAATAT
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
56 4 0.08
57 46 0.92
ACGTcount: A:0.29, C:0.20, G:0.12, T:0.39
Consensus pattern (57 bp):
TTACTAATATAAGTTACCTTTTCGTATTACGATCCAACCACGTAATACCAATTAGTA
Found at i:76353914 original size:3 final size:3
Alignment explanation
Indices: 76353906--76353948 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
76353896 AATTTTACAA
76353906 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
76353949 TAAATTTAGG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:76356409 original size:19 final size:19
Alignment explanation
Indices: 76356381--76356430 Score: 66
Period size: 19 Copynumber: 2.6 Consensus size: 19
76356371 TGGTAATCTA
*
76356381 GCACATAAAGTGAATAC-TG
1 GCACACAAAGTGAAT-CTTG
*
76356400 GCACACAAAGCGAATCTTG
1 GCACACAAAGTGAATCTTG
76356419 GCACACAAAGTG
1 GCACACAAAGTG
76356431 CATCCTAGTG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
18 1 0.04
19 26 0.96
ACGTcount: A:0.40, C:0.22, G:0.22, T:0.16
Consensus pattern (19 bp):
GCACACAAAGTGAATCTTG
Found at i:76367599 original size:27 final size:26
Alignment explanation
Indices: 76367498--76367609 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
76367488 AGGAAGCGTC
* * *
76367498 CTGGTGGCTATGCCACAAATATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
76367525 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
76367552 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGT-T
* * *
76367580 CTGGTGACTGTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
76367606 CTGG
1 CTGG
76367610 CAGCCATGCT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
26 6 0.08
27 54 0.71
28 16 0.21
ACGTcount: A:0.17, C:0.23, G:0.24, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:76367602 original size:54 final size:54
Alignment explanation
Indices: 76367498--76367609 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
76367488 AGGAAGCGTC
*
76367498 CTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * * * *
76367552 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTGTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAAATATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
76367606 CTGG
1 CTGG
76367610 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 34 0.67
55 17 0.33
ACGTcount: A:0.17, C:0.23, G:0.24, T:0.36
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:76377570 original size:18 final size:18
Alignment explanation
Indices: 76377549--76377586 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
76377539 AATTTGTAAA
76377549 TTTTTT-TATATTTTAAT
1 TTTTTTATATATTTTAAT
*
76377566 TTTTTTATATATTTTTAT
1 TTTTTTATATATTTTAAT
76377584 TTT
1 TTT
76377587 GCTATTTCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 6 0.32
18 13 0.68
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (18 bp):
TTTTTTATATATTTTAAT
Found at i:76377664 original size:3 final size:3
Alignment explanation
Indices: 76377656--76377684 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
76377646 GTCATTGAGT
76377656 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
76377685 TATATTTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:76379774 original size:29 final size:29
Alignment explanation
Indices: 76379739--76379812 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
76379729 GTTGTGAGAT
* *
76379739 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
76379768 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
76379797 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
76379813 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:76387514 original size:16 final size:15
Alignment explanation
Indices: 76387486--76387518 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 15
76387476 ATTAAAAATA
76387486 TTTATTTTGTTTTAT
1 TTTATTTTGTTTTAT
76387501 TTTATTTATGTTTTAT
1 TTTATTT-TGTTTTAT
76387517 TT
1 TT
76387519 AATATGTTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.15, C:0.00, G:0.06, T:0.79
Consensus pattern (15 bp):
TTTATTTTGTTTTAT
Found at i:76388637 original size:17 final size:17
Alignment explanation
Indices: 76388611--76388649 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
76388601 TGGGTACGAC
*
76388611 TCTCTTTTCT-TTTCTTT
1 TCTCTATTCTATTTC-TT
76388628 TCTCTATTCTATTTCTT
1 TCTCTATTCTATTTCTT
76388645 TCTCT
1 TCTCT
76388650 GCTTTCCCTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 16 0.80
18 4 0.20
ACGTcount: A:0.05, C:0.26, G:0.00, T:0.69
Consensus pattern (17 bp):
TCTCTATTCTATTTCTT
Found at i:76395247 original size:21 final size:20
Alignment explanation
Indices: 76395221--76395361 Score: 66
Period size: 21 Copynumber: 7.1 Consensus size: 20
76395211 AAACATAATA
*
76395221 ATAGTATTACAAAGTATATAC
1 ATAGTATTA-AAAATATATAC
*
76395242 ATAGTATTAAAAATATGTAC
1 ATAGTATTAAAAATATATAC
* *
76395262 ATA--A-T-ATAATGT-TA-
1 ATAGTATTAAAAATATATAC
* * *
76395276 A-AATA-CAAAAATA-ATAT
1 ATAGTATTAAAAATATATAC
76395293 ATAGTTATTAAAAATATATAC
1 ATAG-TATTAAAAATATATAC
*
76395314 ATAAGATAATGTAAAAAATATATAAT
1 AT-AG-T-AT-T-AAAAATATAT-AC
*
76395340 ATAGTATTCAAAATATATAC
1 ATAGTATTAAAAATATATAC
76395360 AT
1 AT
76395362 GATATATATA
Statistics
Matches: 92, Mismatches: 14, Indels: 29
0.68 0.10 0.21
Matches are distributed among these distances:
13 1 0.01
14 1 0.01
15 3 0.03
16 11 0.12
17 2 0.02
18 2 0.02
19 2 0.02
20 22 0.24
21 23 0.25
22 4 0.04
23 4 0.04
24 2 0.02
25 12 0.13
26 3 0.03
ACGTcount: A:0.55, C:0.05, G:0.06, T:0.34
Consensus pattern (20 bp):
ATAGTATTAAAAATATATAC
Found at i:76395264 original size:20 final size:21
Alignment explanation
Indices: 76395221--76395264 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
76395211 AAACATAATA
*
76395221 ATAGTATTACAAAGTATATAC
1 ATAGTATTACAAAATATATAC
*
76395242 ATAGTATTA-AAAATATGTAC
1 ATAGTATTACAAAATATATAC
76395262 ATA
1 ATA
76395265 ATATAATGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 12 0.57
21 9 0.43
ACGTcount: A:0.50, C:0.07, G:0.09, T:0.34
Consensus pattern (21 bp):
ATAGTATTACAAAATATATAC
Found at i:76395375 original size:23 final size:22
Alignment explanation
Indices: 76395298--76395749 Score: 105
Period size: 24 Copynumber: 20.1 Consensus size: 22
76395288 AATATATAGT
76395298 TATTAAAAATATATACATAAGATA
1 TATTAAAAATATATACAT--GATA
76395322 -ATGTAAAAAATATATA-AT-ATA
1 TAT-T-AAAAATATATACATGATA
*
76395343 GTATTCAAAATATATACATGATA
1 -TATTAAAAATATATACATGATA
*
76395366 TA-TATAAA-A-ATACA--ATA
1 TATTAAAAATATATACATGATA
* * *
76395383 T-TAAAAAGATATATACGTAATA
1 TATTAAAA-ATATATACATGATA
* *
76395405 TATAAAAAATGCATATATAAT-ATAA
1 TATTAAAAAT--ATATA-CATGAT-A
* *
76395430 TATT-AAAATATCTACATAATA
1 TATTAAAAATATATACATGATA
* * * * *
76395451 TA-TACATAT-TAGAAATAATAA
1 TATTAAAAATATATACATGAT-A
* *
76395472 TGTTAAAAACACCTATTA-AT-A-A
1 TATTAAAAATA--TA-TACATGATA
*
76395494 TATTACATAAATATATACCTATATATA
1 TATTA-A-AAATATATA-C-AT-GATA
*
76395521 TATTAAAGATATATACAT-ATA
1 TATTAAAAATATATACATGATA
* *
76395542 TAATAAAACAT-T-TAC-TAATA
1 TATTAAAA-ATATATACATGATA
* * *
76395562 TCAATAATAATA-ATA-AGGATA
1 T-ATTAAAAATATATACATGATA
*
76395583 -ATATAAAAATATATACATGAAA
1 TAT-TAAAAATATATACATGATA
*
76395605 TAGTATAAAAATATATA-ACTAATAA
1 TA-T-TAAAAATATATACA-TGAT-A
76395630 TATTAAAAATATATACATCAGATA
1 TATTAAAAATATATACAT--GATA
*
76395654 -ACATAAAAATATATGA-ATAGTATGA
1 TA-TTAAAAATATAT-ACAT-G-AT-A
*
76395679 TATTTAAAAATATATACATAATA
1 TA-TTAAAAATATATACATGATA
*
76395702 TATATAAAAATATATA-ATTAATAA
1 TAT-TAAAAATATATACA-TGAT-A
* *
76395726 TATT-AAAATACATACATAATA
1 TATTAAAAATATATACATGATA
76395747 TAT
1 TAT
76395750 ATGAAAAACA
Statistics
Matches: 328, Mismatches: 41, Indels: 121
0.67 0.08 0.25
Matches are distributed among these distances:
17 7 0.02
18 1 0.00
19 8 0.02
20 29 0.09
21 57 0.17
22 49 0.15
23 55 0.17
24 63 0.19
25 36 0.11
26 17 0.05
27 6 0.02
ACGTcount: A:0.56, C:0.06, G:0.04, T:0.34
Consensus pattern (22 bp):
TATTAAAAATATATACATGATA
Found at i:76395646 original size:47 final size:44
Alignment explanation
Indices: 76395488--76395757 Score: 189
Period size: 47 Copynumber: 5.8 Consensus size: 44
76395478 AAACACCTAT
* *
76395488 TAATAATATTACATAAATATATACCTATATATATATTAAAGATATATACA
1 TAATAATATTA-A-AAATATATACATAAATATATA--AAA-ATATATA-A
* *
76395538 TATATAATA--AAACAT-T-TAC-T-AATATCAATAATAATA-ATAA
1 TA-ATAATATTAAAAATATATACATAAATAT--ATAAAAATATATAA
**
76395578 GGATAATA-TAAAAATATATACATGAAATAGTATAAAAATATATAA
1 TAATAATATTAAAAATATATACAT-AAATA-TATAAAAATATATAA
* *
76395623 CTAATAATATTAAAAATATATACATCAGATAACATAAAAATATATGAA
1 -TAATAATATTAAAAATATATACAT-AAAT-ATATAAAAATATAT-AA
*
76395671 TAGTATGATATTTAAAAATATATACATAATATATATAAAAATATATAA
1 TA--ATAATA-TTAAAAATATATACATAA-ATATATAAAAATATATAA
*
76395719 TTAATAATATT-AAAATACATACATAATATATATGAAAAA
1 -TAATAATATTAAAAATATATACATAA-ATATAT-AAAAA
76395758 CACATACAAT
Statistics
Matches: 182, Mismatches: 17, Indels: 46
0.74 0.07 0.19
Matches are distributed among these distances:
39 6 0.03
40 6 0.03
41 4 0.02
42 6 0.03
43 7 0.04
44 9 0.05
45 35 0.19
46 15 0.08
47 40 0.22
48 6 0.03
49 22 0.12
50 20 0.11
51 6 0.03
ACGTcount: A:0.57, C:0.06, G:0.04, T:0.34
Consensus pattern (44 bp):
TAATAATATTAAAAATATATACATAAATATATAAAAATATATAA
Found at i:76395662 original size:71 final size:72
Alignment explanation
Indices: 76395579--76395804 Score: 183
Period size: 71 Copynumber: 3.2 Consensus size: 72
76395569 TAATAATAAG
76395579 GATAATATAAAAATATATACAT-G-A-AATAGTATAAAAATATATA-ACTAATA-ATATTAAAAA
1 GATAATATAAAAATATATACATAGTATAATA-TATAAAAATATATACA-TAATATATA-TAAAAA
76395639 TATATACATCA
63 TATATA-ATCA
* * *
76395650 GATAACATAAAAATATATGA-ATAGTATGATATTTAAAAATATATACATAATATATATAAAAATA
1 GATAATATAAAAATATAT-ACATAGTATAATATATAAAAATATATACATAATATATATAAAAATA
*
76395714 TATAATTA
65 TATAATCA
* * * * *
76395722 -ATAATATTAAAATACATACATA--AT-ATATATGAAAAACACATACA-ATATATATATTCAAAA
1 GATAATATAAAAATATATACATAGTATAATATAT-AAAAATATATACATA-ATATATA-TAAAAA
*
76395782 T-GATAAT-A
63 TATATAATCA
76395790 -ATAATATTAAAAATA
1 GATAATA-TAAAAATA
76395805 ACCATTAATA
Statistics
Matches: 131, Mismatches: 13, Indels: 24
0.78 0.08 0.14
Matches are distributed among these distances:
68 13 0.10
69 32 0.24
70 7 0.05
71 36 0.27
72 5 0.04
73 31 0.24
74 7 0.05
ACGTcount: A:0.58, C:0.05, G:0.04, T:0.32
Consensus pattern (72 bp):
GATAATATAAAAATATATACATAGTATAATATATAAAAATATATACATAATATATATAAAAATAT
ATAATCA
Found at i:76395686 original size:26 final size:23
Alignment explanation
Indices: 76395583--76395844 Score: 165
Period size: 24 Copynumber: 11.2 Consensus size: 23
76395573 AATAAGGATA
76395583 ATATAAAAATATATACATGAA-AT
1 ATATAAAAATATATACAT-AATAT
76395606 AGTATAAAAATATATA-ACTAATA-
1 A-TATAAAAATATATACA-TAATAT
76395629 ATATTAAAAATATATACATCAGATA-
1 ATA-TAAAAATATATACAT-A-ATAT
*
76395654 ACATAAAAATATATGA-ATAGTATGAT
1 ATATAAAAATATAT-ACATA--AT-AT
*
76395680 ATTTAAAAATATATACATAATAT
1 ATATAAAAATATATACATAATAT
76395703 ATATAAAAATATATA-ATTAATA-
1 ATATAAAAATATATACA-TAATAT
* *
76395725 ATATTAAAATACATACATAATAT
1 ATATAAAAATATATACATAATAT
* *
76395748 ATATGAAAAACACATACA-ATATAT
1 ATAT-AAAAATATATACATA-ATAT
* *
76395772 ATATTCAAAAT-GATA-ATAATA-
1 ATA-TAAAAATATATACATAATAT
*
76395793 ATATTAAAAATA-A-CCATTAATAGT
1 ATA-TAAAAATATATACA-TAATA-T
* *
76395817 ACTATATAAATATATTCAT-ATAT
1 A-TATAAAAATATATACATAATAT
76395840 ATATA
1 ATATA
76395845 CATATAAATA
Statistics
Matches: 196, Mismatches: 16, Indels: 55
0.73 0.06 0.21
Matches are distributed among these distances:
21 12 0.06
22 34 0.17
23 52 0.27
24 68 0.35
25 13 0.07
26 17 0.09
ACGTcount: A:0.57, C:0.06, G:0.03, T:0.34
Consensus pattern (23 bp):
ATATAAAAATATATACATAATAT
Found at i:76396162 original size:13 final size:14
Alignment explanation
Indices: 76396144--76396183 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
76396134 GGTAAAAATT
*
76396144 TTTTATTTTTTT-G
1 TTTTATTTTTTTAC
76396157 TTTTATTTTTTTTAC
1 TTTTA-TTTTTTTAC
76396172 TTTTATTTTTTT
1 TTTTATTTTTTT
76396184 TATCTATGTC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
13 5 0.21
14 14 0.58
15 5 0.21
ACGTcount: A:0.10, C:0.03, G:0.03, T:0.85
Consensus pattern (14 bp):
TTTTATTTTTTTAC
Found at i:76396167 original size:15 final size:15
Alignment explanation
Indices: 76396144--76396185 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
76396134 GGTAAAAATT
*
76396144 TTTTA-TTTTTTT-G
1 TTTTATTTTTTTTAC
76396157 TTTTATTTTTTTTAC
1 TTTTATTTTTTTTAC
76396172 TTTTATTTTTTTTA
1 TTTTATTTTTTTTA
76396186 TCTATGTCTA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
13 5 0.19
14 7 0.27
15 14 0.54
ACGTcount: A:0.12, C:0.02, G:0.02, T:0.83
Consensus pattern (15 bp):
TTTTATTTTTTTTAC
Found at i:76397376 original size:13 final size:13
Alignment explanation
Indices: 76397358--76397393 Score: 63
Period size: 14 Copynumber: 2.7 Consensus size: 13
76397348 ATGAGTTGAT
76397358 TTTTGAAAACAGA
1 TTTTGAAAACAGA
76397371 TTTTGAAAAACAGA
1 TTTTG-AAAACAGA
76397385 TTTTGAAAA
1 TTTTGAAAA
76397394 TACCTCGACA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 9 0.41
14 13 0.59
ACGTcount: A:0.47, C:0.06, G:0.14, T:0.33
Consensus pattern (13 bp):
TTTTGAAAACAGA
Found at i:76397391 original size:88 final size:87
Alignment explanation
Indices: 76397239--76397637 Score: 399
Period size: 88 Copynumber: 4.6 Consensus size: 87
76397229 GTGATCCTAA
* * * *
76397239 GCTCAACTCACTTCTCGTAATATGAGTTGACTCTTTAAAAACAGACATT-AAAAACAGAAATTGA
1 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTAAAAACAGAAATTGAAAAACAGAAATTGA
* *
76397303 AAATAGCTCAGCACGTGAGCCAAG
65 AAATACCTCAGCA-GTGACCCAAG
* ** **
76397327 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGATTTTGAAAAACAGATTTTGAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAAACAGAAATTGAAAAACAGAAATTGAA
76397392 AATACCTC-GACATGTGACCCAAG
66 AATACCTCAG-CA-GTGACCCAAG
* * *
76397415 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTTAAAAAACATAAATTGAAAAAACAGAAATTA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTT-AAAAACAGAAATTG-AAAAACAGAAATTG
* * *
76397480 AAAATACCTTAGCA-TGTCCTAAG
64 AAAATACCTCAGCAGTGACCCAAG
** ** *
76397503 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA-AG--A---AAAAATTGAAA-AG-
1 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTAAAAACAGAAATTGAAAAACAGAAATTGA
* *
76397560 AAATACCTCAGCA-TGTCCCGAG
65 AAATACCTCAGCAGTGACCCAAG
*
76397582 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGAAATTGAAAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTT-AAAAACAGAAATTGAAAA
76397638 GAAATACCTC
Statistics
Matches: 261, Mismatches: 36, Indels: 29
0.80 0.11 0.09
Matches are distributed among these distances:
79 49 0.19
80 6 0.02
81 11 0.04
82 2 0.01
84 1 0.00
85 1 0.00
87 20 0.08
88 133 0.51
89 15 0.06
90 22 0.08
91 1 0.00
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.27
Consensus pattern (87 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAAACAGAAATTGAAAAACAGAAATTGAA
AATACCTCAGCAGTGACCCAAG
Found at i:76397482 original size:14 final size:14
Alignment explanation
Indices: 76397448--76397483 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
76397438 GAGTTGATTT
*
76397448 TTAAAAAACATAAA
1 TTAAAAAACAGAAA
76397462 TTGAAAAAACAGAAA
1 TT-AAAAAACAGAAA
76397477 TTAAAAA
1 TTAAAAA
76397484 TACCTTAGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.69, C:0.06, G:0.06, T:0.19
Consensus pattern (14 bp):
TTAAAAAACAGAAA
Found at i:76397520 original size:176 final size:175
Alignment explanation
Indices: 76397221--76397537 Score: 462
Period size: 176 Copynumber: 1.8 Consensus size: 175
76397211 TTATTCTTTA
* * * *
76397221 CTCGGCATGTGATCCTAAGCTCAACTCACTTCTCGTAATATGAGTTGACTCTTTAAAAACAGACA
1 CTCGACATGTGATCCCAAGCTCAACTCACTTCTCGCAATATGAGTTGACTCTTTAAAAACAGAAA
* *
76397286 TTAAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATG
66 TTAAAAACAGAAATTAAAAATACCTCAGCAC-TGAGCCAAGGCTCAACTCACCTCTCGCAATATG
76397351 AGTTGATTTTTGAAAACAGATTTTGAAAAACAGATTTTGAAAATAC
130 AGTTGATTTTTGAAAACAGATTTTGAAAAACAGATTTTGAAAATAC
* *
76397397 CTCGACATGTGA-CCCAAGGCTCAACTCACTTCTCGCAATATGAGTTGA-TTTTTAAAAAACATA
1 CTCGACATGTGATCCCAA-GCTCAACTCACTTCTCGCAATATGAGTTGACTCTTT-AAAAACAGA
* *
76397460 AATTGAAAAAACAGAAATTAAAAATACCTTAGCA-TG-TCCTAAGGCTCAACTCACCTCTCGCAA
64 AATT--AAAAACAGAAATTAAAAATACCTCAGCACTGAGCC-AAGGCTCAACTCACCTCTCGCAA
76397523 TATGAGTTGATTTTT
126 TATGAGTTGATTTTT
76397538 TTGAAAAGAA
Statistics
Matches: 126, Mismatches: 10, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
175 10 0.08
176 91 0.72
178 25 0.20
ACGTcount: A:0.37, C:0.21, G:0.15, T:0.28
Consensus pattern (175 bp):
CTCGACATGTGATCCCAAGCTCAACTCACTTCTCGCAATATGAGTTGACTCTTTAAAAACAGAAA
TTAAAAACAGAAATTAAAAATACCTCAGCACTGAGCCAAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTGAAAACAGATTTTGAAAAACAGATTTTGAAAATAC
Found at i:76397612 original size:79 final size:79
Alignment explanation
Indices: 76397481--76397769 Score: 401
Period size: 79 Copynumber: 3.7 Consensus size: 79
76397471 CAGAAATTAA
* **
76397481 AAATACCTTAGCATGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAG
1 AAATACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAG
*
76397546 AAAAAATTGAAAAG
66 AAGAAATTGAAAAG
76397560 AAATACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAG
1 AAATACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAG
*
76397625 CAGAAATTGAAAAG
66 AAGAAATTGAAAAG
** * **
76397639 AAATACCTCAGTGTGTTCCGAGGCTCAACTCA-CTCTCATAATATGAGTTGATTTTTTTG-AAAG
1 AAATACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAG
76397702 ACAGAAATTG---A-
66 A-AGAAATTGAAAAG
* * **
76397713 AAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AAATACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
76397770 GAAAATAGAA
Statistics
Matches: 190, Mismatches: 18, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
74 27 0.14
75 23 0.12
77 4 0.02
78 33 0.17
79 103 0.54
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (79 bp):
AAATACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAG
AAGAAATTGAAAAG
Found at i:76397798 original size:153 final size:155
Alignment explanation
Indices: 76397501--76397786 Score: 395
Period size: 153 Copynumber: 1.9 Consensus size: 155
76397491 GCATGTCCTA
*
76397501 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGAAAAAATTGAAAAGAAATAC
1 AGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTGAAAAGAAAAAATTG--AAGAAATAC
*
76397566 CTCAGCATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGAAA
64 CTCAACATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAGCAGAAA
** *
76397631 TTGAAAAGAAATACCTCAGTGTGTTCCG
128 TAAAAAACAAATACCTCAGTGTGTTCCG
* *
76397659 AGGCTCAACTCA-CTCTCATAATATGAGTTGATTTTTTTG-AAAGACAGAAATTG-A-AAATACC
1 AGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTGAAAAGA-AAAAATTGAAGAAATACC
* ** *
76397720 TCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAA-TAGAAATA
65 TCAACATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAGCAGAAATA
76397783 AAAA
130 AAAA
76397787 CATCAGAATA
Statistics
Matches: 117, Mismatches: 10, Indels: 10
0.85 0.07 0.07
Matches are distributed among these distances:
150 9 0.08
151 10 0.09
153 48 0.41
154 1 0.01
156 5 0.04
157 32 0.27
158 12 0.10
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.29
Consensus pattern (155 bp):
AGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTGAAAAGAAAAAATTGAAGAAATACCT
CAACATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAGCAGAAATAA
AAAACAAATACCTCAGTGTGTTCCG
Found at i:76412818 original size:20 final size:21
Alignment explanation
Indices: 76412775--76412818 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
76412765 AAACATAATA
*
76412775 ATAGTATTACAAAGTATATAC
1 ATAGTATTACAAAATATATAC
*
76412796 ATAGTATTA-AAAATATGTAC
1 ATAGTATTACAAAATATATAC
76412816 ATA
1 ATA
76412819 ATATAATGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 12 0.57
21 9 0.43
ACGTcount: A:0.50, C:0.07, G:0.09, T:0.34
Consensus pattern (21 bp):
ATAGTATTACAAAATATATAC
Found at i:76412931 original size:23 final size:22
Alignment explanation
Indices: 76412853--76412933 Score: 69
Period size: 21 Copynumber: 3.5 Consensus size: 22
76412843 AATATATAGT
76412853 TATTAAAAAATATATACATAAGATA
1 TATT-AAAAATATATACAT--GATA
76412878 -ATGTAAAAAATATATA-AT-ATA
1 TAT-T-AAAAATATATACATGATA
*
76412899 GTATTCAAAATATATACATGATA
1 -TATTAAAAATATATACATGATA
76412922 TATATAAAAATA
1 TAT-TAAAAATA
76412934 CAATATTAAA
Statistics
Matches: 48, Mismatches: 2, Indels: 14
0.75 0.03 0.22
Matches are distributed among these distances:
21 13 0.27
22 6 0.12
23 12 0.25
24 4 0.08
25 13 0.27
ACGTcount: A:0.58, C:0.04, G:0.05, T:0.33
Consensus pattern (22 bp):
TATTAAAAATATATACATGATA
Found at i:76412985 original size:24 final size:23
Alignment explanation
Indices: 76412958--76413014 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 23
76412948 TATATATACG
*
76412958 TAATATATA-TAAAAAATGCATATA
1 TAATATATATTAAAAAAT-C-TACA
*
76412982 TAATATAATATTAAAATATCTACA
1 TAATAT-ATATTAAAAAATCTACA
76413006 TAATATATA
1 TAATATATA
76413015 CATATTAGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
23 3 0.10
24 15 0.52
25 4 0.14
26 7 0.24
ACGTcount: A:0.56, C:0.05, G:0.02, T:0.37
Consensus pattern (23 bp):
TAATATATATTAAAAAATCTACA
Found at i:76413085 original size:21 final size:20
Alignment explanation
Indices: 76413061--76413114 Score: 54
Period size: 23 Copynumber: 2.5 Consensus size: 20
76413051 TAATATTACA
*
76413061 TAAATATATACCTATATATAT
1 TAAATATATACATATATA-AT
76413082 TAAAGATATATACATATATAAT
1 T-AA-ATATATACATATATAAT
* *
76413104 AAAACATATAC
1 TAAATATATAC
76413115 TAATATCAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
20 7 0.25
21 3 0.11
22 4 0.14
23 14 0.50
ACGTcount: A:0.54, C:0.09, G:0.02, T:0.35
Consensus pattern (20 bp):
TAAATATATACATATATAAT
Found at i:76413210 original size:72 final size:71
Alignment explanation
Indices: 76413134--76413363 Score: 199
Period size: 72 Copynumber: 3.2 Consensus size: 71
76413124 TAATAATAAG
*
76413134 GATAATATAAAAATATATACATAAAATAGTATAAAAAATATATA-ACTAATA-ATATTAAAAATA
1 GATAATATAAAAATATATACATAATATAGTATAAAAAATATATACA-TAATATATA-TAAAAATA
76413197 TATACATCA
64 TATA-ATCA
* * *
76413206 GATAACATAAAAATATATGA-ATAGTAT-GATATTTAAAAATATATACATAATATATATAAAAAT
1 GATAATATAAAAATATAT-ACATAATATAG-TA-TAAAAAATATATACATAATATATATAAAAAT
*
76413269 ATATAATTA
63 ATATAATCA
* * * * *
76413278 -ATAATATTAAAAATACATACATAATATA-TATGAAAAACACATACAATATATATATATTCAAAA
1 GATAATA-TAAAAATATATACATAATATAGTATAAAAAATATATAC-ATA-ATATATA-TAAAAA
*
76413341 T-GATAAT-A
62 TATATAATCA
76413349 -ATAATATTAAAAATA
1 GATAATA-TAAAAATA
76413364 ACCATTAATA
Statistics
Matches: 134, Mismatches: 13, Indels: 23
0.79 0.08 0.14
Matches are distributed among these distances:
70 11 0.08
71 28 0.21
72 55 0.41
73 36 0.27
74 4 0.03
ACGTcount: A:0.59, C:0.05, G:0.03, T:0.32
Consensus pattern (71 bp):
GATAATATAAAAATATATACATAATATAGTATAAAAAATATATACATAATATATATAAAAATATA
TAATCA
Found at i:76413242 original size:26 final size:23
Alignment explanation
Indices: 76413138--76413363 Score: 164
Period size: 23 Copynumber: 9.5 Consensus size: 23
76413128 AATAAGGATA
*
76413138 ATATAAAAATATATACATAAAAT
1 ATATAAAAATATATACATAATAT
76413161 AGTATAAAAAATATATA-ACTAATA-
1 A-TAT-AAAAATATATACA-TAATAT
76413185 ATATTAAAAATATATACATCAGATA-
1 ATA-TAAAAATATATACAT-A-ATAT
*
76413210 ACATAAAAATATATGA-ATAGTATGAT
1 ATATAAAAATATAT-ACATA--AT-AT
*
76413236 ATTTAAAAATATATACATAATAT
1 ATATAAAAATATATACATAATAT
76413259 ATATAAAAATATATA-ATTAATA-
1 ATATAAAAATATATACA-TAATAT
*
76413281 ATATTAAAAATACATACATAATAT
1 ATA-TAAAAATATATACATAATAT
* *
76413305 ATATGAAAAACACATACAATATATAT
1 ATAT-AAAAATATATAC-ATA-ATAT
* *
76413331 ATATTCAAAAT-GATA-ATAATA-
1 ATA-TAAAAATATATACATAATAT
76413352 ATATTAAAAATA
1 ATA-TAAAAATA
76413364 ACCATTAATA
Statistics
Matches: 170, Mismatches: 12, Indels: 43
0.76 0.05 0.19
Matches are distributed among these distances:
21 10 0.06
22 7 0.04
23 57 0.34
24 40 0.24
25 29 0.17
26 26 0.15
27 1 0.01
ACGTcount: A:0.59, C:0.05, G:0.03, T:0.32
Consensus pattern (23 bp):
ATATAAAAATATATACATAATAT
Found at i:76413283 original size:14 final size:12
Alignment explanation
Indices: 76413095--76413308 Score: 55
Period size: 12 Copynumber: 17.5 Consensus size: 12
76413085 AGATATATAC
*
76413095 ATATATAATAAA
1 ATATATAATAAT
* *
76413107 ACATATACTAAT
1 ATATATAATAAT
*
76413119 ATCAATAATAATAAGG
1 AT--AT-ATAATAA-T
76413135 ATAATATAA-AA-
1 AT-ATATAATAAT
*
76413146 ATATATACATAAA
1 ATATATA-ATAAT
*
76413159 ATAGTATAA-AAA
1 ATA-TATAATAAT
76413171 ATATATAACTAAT
1 ATATATAA-TAAT
76413184 A-ATATTAA-AA-
1 ATATA-TAATAAT
76413194 ATATATACATCAGAT
1 ATATATA-AT-A-AT
*
76413209 A-ACATAA-AA-
1 ATATATAATAAT
76413218 ATATATGAATAGTAT
1 ATATAT-AATA--AT
*
76413233 GATATTTAA-AA-
1 -ATATATAATAAT
76413244 ATATATACATAAT
1 ATATATA-ATAAT
76413257 ATATATAA-AA-
1 ATATATAATAAT
76413267 ATATATAATTAAT
1 ATATATAA-TAAT
76413280 A-ATATTAA-AA-
1 ATATA-TAATAAT
*
76413290 ATACATACATAAT
1 ATATATA-ATAAT
76413303 ATATAT
1 ATATAT
76413309 GAAAAACACA
Statistics
Matches: 154, Mismatches: 13, Indels: 69
0.65 0.06 0.29
Matches are distributed among these distances:
9 1 0.01
10 29 0.19
11 25 0.16
12 33 0.21
13 30 0.19
14 17 0.11
15 12 0.08
16 7 0.05
ACGTcount: A:0.59, C:0.05, G:0.03, T:0.33
Consensus pattern (12 bp):
ATATATAATAAT
Found at i:76413325 original size:22 final size:23
Alignment explanation
Indices: 76413277--76413332 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 23
76413267 ATATATAATT
* *
76413277 AATA-ATATTAAAAATACATACA
1 AATATATATGAAAAACACATACA
76413299 TAATATATATGAAAAACACATACA
1 -AATATATATGAAAAACACATACA
76413323 ATATATATAT
1 A-ATATATAT
76413333 ATTCAAAATG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 5 0.17
24 24 0.83
ACGTcount: A:0.59, C:0.09, G:0.02, T:0.30
Consensus pattern (23 bp):
AATATATATGAAAAACACATACA
Found at i:76413341 original size:96 final size:96
Alignment explanation
Indices: 76413141--76413363 Score: 253
Period size: 96 Copynumber: 2.3 Consensus size: 96
76413131 AAGGATAATA
* *
76413141 TAAAAATATATACATAAAATAGTATAAAAAATATATAACTAATAATATTAAAAATATATACATCA
1 TAAAAATATATACATAATATA-TAT-AAAAATATATAACTAATAATATTAAAAATACATACATCA
* * *
76413206 GATAACATAAAAATATATGAATAGTATGATATT
64 GATAACATAAAAACACATCAATAGTATGATATT
*
76413239 TAAAAATATATACATAATATATATAAAAATATATAATTAATAATATTAAAAATACATACAT-A-A
1 TAAAAATATATACATAATATATATAAAAATATATAACTAATAATATTAAAAATACATACATCAGA
*
76413302 TATATATGAAAAACACATACAATA-TAT-ATATAT
66 TA-ACAT-AAAAACACAT-CAATAGTATGATAT-T
* *
76413335 TCAAAAT-GATA-ATAATA-ATATTAAAAATA
1 TAAAAATATATACATAATATATA-TAAAAATA
76413364 ACCATTAATA
Statistics
Matches: 111, Mismatches: 9, Indels: 14
0.83 0.07 0.10
Matches are distributed among these distances:
93 3 0.03
94 17 0.15
95 11 0.10
96 53 0.48
97 7 0.06
98 20 0.18
ACGTcount: A:0.59, C:0.05, G:0.03, T:0.32
Consensus pattern (96 bp):
TAAAAATATATACATAATATATATAAAAATATATAACTAATAATATTAAAAATACATACATCAGA
TAACATAAAAACACATCAATAGTATGATATT
Found at i:76413406 original size:18 final size:18
Alignment explanation
Indices: 76413380--76413414 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
76413370 AATAGTACTA
*
76413380 TATAAATATATTCATATG
1 TATAAATATATACATATG
*
76413398 TATATATATATACATAT
1 TATAAATATATACATAT
76413415 AAATACTAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.46, C:0.06, G:0.03, T:0.46
Consensus pattern (18 bp):
TATAAATATATACATATG
Found at i:76413528 original size:28 final size:31
Alignment explanation
Indices: 76413466--76413528 Score: 71
Period size: 28 Copynumber: 2.1 Consensus size: 31
76413456 CAAAATATTG
* *
76413466 ATAATAGATATAATAATGATATTAATAAAAT
1 ATAATAGATATAATAATAATATTAATAAAAA
76413497 ATAATAG-TAT-A-AATAATATTAA-AATAAA
1 ATAATAGATATAATAATAATATTAATAA-AAA
76413525 ATAA
1 ATAA
76413529 AATACGTAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
27 2 0.07
28 16 0.55
29 1 0.03
30 3 0.10
31 7 0.24
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (31 bp):
ATAATAGATATAATAATAATATTAATAAAAA
Found at i:76414092 original size:14 final size:15
Alignment explanation
Indices: 76414073--76414114 Score: 59
Period size: 15 Copynumber: 2.8 Consensus size: 15
76414063 GGTAAAAAAT
*
76414073 TTTTATTTTTTTT-G
1 TTTTATTTTTTTTAC
76414087 TTTTATTTTTTTTTAC
1 TTTTA-TTTTTTTTAC
76414103 TTTTATTTTTTT
1 TTTTATTTTTTT
76414115 CATGTGTGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
14 5 0.20
15 15 0.60
16 5 0.20
ACGTcount: A:0.10, C:0.02, G:0.02, T:0.86
Consensus pattern (15 bp):
TTTTATTTTTTTTAC
Found at i:76414099 original size:16 final size:16
Alignment explanation
Indices: 76414073--76414114 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 16
76414063 GGTAAAAAAT
*
76414073 TTTTA-TTTTTTTT-G
1 TTTTATTTTTTTTTAC
76414087 TTTTATTTTTTTTTAC
1 TTTTATTTTTTTTTAC
76414103 TTTTATTTTTTT
1 TTTTATTTTTTT
76414115 CATGTGTGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 5 0.20
15 8 0.32
16 12 0.48
ACGTcount: A:0.10, C:0.02, G:0.02, T:0.86
Consensus pattern (16 bp):
TTTTATTTTTTTTTAC
Found at i:76414122 original size:2 final size:2
Alignment explanation
Indices: 76414117--76414147 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
76414107 ATTTTTTTCA
*
76414117 TG TG TG TG TG TG TG TC TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
76414148 CTTGAAAGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.03, G:0.45, T:0.52
Consensus pattern (2 bp):
TG
Found at i:76414434 original size:15 final size:15
Alignment explanation
Indices: 76414414--76414453 Score: 80
Period size: 15 Copynumber: 2.7 Consensus size: 15
76414404 GCAGGTGCAA
76414414 GTGGCGATGGAGCAG
1 GTGGCGATGGAGCAG
76414429 GTGGCGATGGAGCAG
1 GTGGCGATGGAGCAG
76414444 GTGGCGATGG
1 GTGGCGATGG
76414454 GTGGTGGCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.17, C:0.12, G:0.55, T:0.15
Consensus pattern (15 bp):
GTGGCGATGGAGCAG
Found at i:76416387 original size:19 final size:19
Alignment explanation
Indices: 76416363--76416401 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
76416353 CCGTAAAAGG
76416363 AAGAATGAAAATTTTATAC
1 AAGAATGAAAATTTTATAC
76416382 AAGAATGAAAATTTTATAC
1 AAGAATGAAAATTTTATAC
76416401 A
1 A
76416402 TTCTTTTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.54, C:0.05, G:0.10, T:0.31
Consensus pattern (19 bp):
AAGAATGAAAATTTTATAC
Found at i:76418856 original size:20 final size:22
Alignment explanation
Indices: 76418831--76418873 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
76418821 TGCAAAAAGG
*
76418831 ACAACA-C-AATAGAGAGAAAA
1 ACAACAGCAAATACAGAGAAAA
76418851 ACAACAGCAAATACAGAGAAAA
1 ACAACAGCAAATACAGAGAAAA
76418873 A
1 A
76418874 TCAAAAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 6 0.30
21 1 0.05
22 13 0.65
ACGTcount: A:0.65, C:0.16, G:0.14, T:0.05
Consensus pattern (22 bp):
ACAACAGCAAATACAGAGAAAA
Done.