Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 223 of 295
Found at i:76843849 original size:15 final size:15
Alignment explanation
Indices: 76843773--76843849 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
76843763 AGAAAACCGA
76843773 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
76843788 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
76843802 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
76843816 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
76843832 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
76843847 ATA
1 ATA
76843850 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:76846828 original size:44 final size:44
Alignment explanation
Indices: 76846765--76846937 Score: 206
Period size: 44 Copynumber: 3.9 Consensus size: 44
76846755 ATGTAACCCG
*
76846765 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATTCGCAT
* *
76846809 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGC-CTAGTT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATTCGC-A--T
* * * *
76846855 ACATCTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACTCGCAT
1 CCA--TAAGCGAACTCGGACTCAACTCAACGAGCTCGGATTCGCAT
* *
76846900 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGAT
76846938 GCCCAAATAT
Statistics
Matches: 109, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 3 0.03
44 67 0.61
45 3 0.03
46 3 0.03
47 30 0.28
48 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (44 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATTCGCAT
Found at i:76846881 original size:91 final size:91
Alignment explanation
Indices: 76846772--76846940 Score: 302
Period size: 91 Copynumber: 1.9 Consensus size: 91
76846762 CCGCCATAAG
**
76846772 CGAACTCGGACTCAACTCAACGAGCTCGGGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 CGAACTCGGACTCAACTCAACGAGCTCGGACTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
76846837 GAGCTCGGATGCCTAGTTACATCTCA
66 GAGCTCGGATGCCTAGTTACATCTCA
*
76846863 CGAACTCGGACTCAACTCAACGAGTTCGGACTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 CGAACTCGGACTCAACTCAACGAGCTCGGACTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
*
76846928 GAGTTCGGATGCC
66 GAGCTCGGATGCC
76846941 CAAATATCCA
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
91 74 1.00
ACGTcount: A:0.28, C:0.31, G:0.21, T:0.20
Consensus pattern (91 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATCTCA
Found at i:76849399 original size:27 final size:27
Alignment explanation
Indices: 76849369--76849546 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
76849359 ATATTGAGTC
* * * *
76849369 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
76849396 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
76849423 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
76849451 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
76849478 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
76849505 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
76849532 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
76849547 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:76849508 original size:82 final size:81
Alignment explanation
Indices: 76849390--76849545 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
76849380 TGCTATATAA
* *
76849390 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
76849455 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
76849472 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
76849536 CACTTAGTGC
65 CACTTAGTGC
76849546 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:76852528 original size:16 final size:16
Alignment explanation
Indices: 76852507--76852537 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
76852497 GAATAATCAC
*
76852507 AAGAAAGTGTACACCA
1 AAGAAAGAGTACACCA
76852523 AAGAAAGAGTACACC
1 AAGAAAGAGTACACC
76852538 TCAGAGTTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.19, G:0.19, T:0.10
Consensus pattern (16 bp):
AAGAAAGAGTACACCA
Found at i:76853086 original size:25 final size:26
Alignment explanation
Indices: 76853034--76853088 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 26
76853024 GTTATTTGGG
* *
76853034 AAGCCTTAGTAGCAAAGTTATCTTGA
1 AAGCCTTAGTAGCAAAGTCATCTAGA
* *
76853060 AAGCCTTTGTGGC-AAGTCATCTAGA
1 AAGCCTTAGTAGCAAAGTCATCTAGA
76853085 AAGC
1 AAGC
76853089 TCGTATGGGG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
25 14 0.56
26 11 0.44
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (26 bp):
AAGCCTTAGTAGCAAAGTCATCTAGA
Found at i:76856141 original size:42 final size:43
Alignment explanation
Indices: 76856074--76856180 Score: 126
Period size: 43 Copynumber: 2.5 Consensus size: 43
76856064 ATCCATTATG
* *
76856074 AACTCGGACCTCTCAACAAGCTTGGATGC-CACATAGATCTCA
1 AACTCGGACCACTCAACAAGCTTGGATGCTCACATAGATCACA
* * * * *
76856116 AACTTGGACCACTCAACAAGTTTGGATTCTCACATATATCACG
1 AACTCGGACCACTCAACAAGCTTGGATGCTCACATAGATCACA
* *
76856159 AACTCGGACCGCTCAACGAGCT
1 AACTCGGACCACTCAACAAGCT
76856181 CAGATTTCTA
Statistics
Matches: 53, Mismatches: 11, Indels: 1
0.82 0.17 0.02
Matches are distributed among these distances:
42 25 0.47
43 28 0.53
ACGTcount: A:0.31, C:0.30, G:0.17, T:0.22
Consensus pattern (43 bp):
AACTCGGACCACTCAACAAGCTTGGATGCTCACATAGATCACA
Found at i:76873655 original size:40 final size:40
Alignment explanation
Indices: 76873562--76873818 Score: 342
Period size: 40 Copynumber: 6.5 Consensus size: 40
76873552 AAGCCAAGTA
* * *
76873562 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
76873600 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
76873640 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
76873680 CCTTCGGGACTTAGCCCAGATGTAATAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
76873720 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
76873760 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
76873800 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
76873819 TTATCATCCG
Statistics
Matches: 197, Mismatches: 18, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
38 12 0.06
39 18 0.09
40 167 0.85
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:76881756 original size:40 final size:40
Alignment explanation
Indices: 76881671--76881924 Score: 345
Period size: 40 Copynumber: 6.4 Consensus size: 40
76881661 AAGCCAAGTA
* * *
76881671 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
76881709 CCTTCGGGACATAGCCCAGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
76881749 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGGACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
76881789 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
76881829 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
76881869 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
76881909 CCTTCGGGACTTAGCC
1 CCTTCGGGACTTAGCC
76881925 TGGTTATCAT
Statistics
Matches: 193, Mismatches: 19, Indels: 6
0.89 0.09 0.03
Matches are distributed among these distances:
38 12 0.06
39 17 0.09
40 164 0.85
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:76885268 original size:47 final size:46
Alignment explanation
Indices: 76885158--76885427 Score: 200
Period size: 47 Copynumber: 5.8 Consensus size: 46
76885148 TTGTGTGTGG
*
76885158 GCTAGTGTAAGA-CATGTCTGGGACATGAATCGGCCACATT-ATGA-G-A
1 GCTAGTGTAAGACCATGTCTGGGACATGCATCGG---CATTGA-GACGAA
* * *
76885204 GCCAGTTTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGT
1 GCTAGTGTAAGACCATGTCTGGGACAT-GCATCGGCATTGAGACGA-A
* ** * *
76885252 GCTAGGGTAAGA-CATGTCCAGGACATGCATCGGCCTCGAGACGTAA
1 GCTAGTGTAAGACCATGTCTGGGACATGCATCGGCATTGAGACG-AA
* * *
76885298 GCCAGTGTAAGA-CATGTCTGGGACATGCATCGGCTACT-AGATGATA
1 GCTAGTGTAAGACCATGTCTGGGACATGCATCGGC-ATTGAGACGA-A
* * *
76885344 G-TCAGTGTAAGACCATGTCTTGGACATGGCATC-G-ATTTGAGATGTGA
1 GCT-AGTGTAAGACCATGTCTGGGACAT-GCATCGGCA-TTGAGACG-AA
*
76885391 GCTAGTGTAAGACCGTGTCTGGGACATAGCATCGGCA
1 GCTAGTGTAAGACCATGTCTGGGACAT-GCATCGGCA
76885428 CCTTACCCAT
Statistics
Matches: 179, Mismatches: 27, Indels: 33
0.75 0.11 0.14
Matches are distributed among these distances:
45 8 0.04
46 73 0.41
47 75 0.42
48 22 0.12
49 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (46 bp):
GCTAGTGTAAGACCATGTCTGGGACATGCATCGGCATTGAGACGAA
Found at i:76885416 original size:140 final size:141
Alignment explanation
Indices: 76885161--76885426 Score: 351
Period size: 140 Copynumber: 1.9 Consensus size: 141
76885151 TGTGTGGGCT
* *
76885161 AGTGTAAGACATGTCTGGGACATGAATCGGCCACATTATGAGAGCCAGTTTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGAATCGGCCACATGATGAGAGCCAGTGTAAGACCATGTCTGG
*
76885226 GACATGGCATCGGCATTGAGACGAGTGCTAGGGTAAGACATGTCCAGGACAT-GCATCGGCCTCG
66 GACATGGCATCGGCATTGAGACGAGAGCTAGGGTAAGACATGTCCAGGACATAGCATCGGCCTCG
76885290 AGACGTAAGCC
131 AGACGTAAGCC
* * * * *
76885301 AGTGTAAGACATGTCTGGGACATGCATCGGCTAC-TAGATGATAGTCAGTGTAAGACCATGTCTT
1 AGTGTAAGACATGTCTGGGACATGAATCGGCCACAT-GATGAGAGCCAGTGTAAGACCATGTCTG
* * * * **
76885365 GGACATGGCATC-G-ATTTGAGATGTGAGCTAGTGTAAGACCGTGTCTGGGACATAGCATCGGC
65 GGACATGGCATCGGCA-TTGAGACGAGAGCTAGGGTAAGA-CATGTCCAGGACATAGCATCGGC
76885427 ACCTTACCCA
Statistics
Matches: 108, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
138 1 0.01
139 21 0.19
140 78 0.72
141 8 0.07
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (141 bp):
AGTGTAAGACATGTCTGGGACATGAATCGGCCACATGATGAGAGCCAGTGTAAGACCATGTCTGG
GACATGGCATCGGCATTGAGACGAGAGCTAGGGTAAGACATGTCCAGGACATAGCATCGGCCTCG
AGACGTAAGCC
Found at i:76892195 original size:40 final size:40
Alignment explanation
Indices: 76892140--76892363 Score: 297
Period size: 40 Copynumber: 5.5 Consensus size: 40
76892130 TATTTGGATG
76892140 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
76892180 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
76892223 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* ** * *
76892263 ATATCTGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
76892303 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
76892343 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
76892364 ATACTTGGGT
Statistics
Matches: 163, Mismatches: 18, Indels: 7
0.87 0.10 0.04
Matches are distributed among these distances:
39 13 0.08
40 112 0.69
41 1 0.01
43 37 0.23
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:76892283 original size:83 final size:79
Alignment explanation
Indices: 76892144--76892363 Score: 282
Period size: 83 Copynumber: 2.7 Consensus size: 79
76892134 TGGATGATAT
* **
76892144 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATAT-CGGGCTAAGTCCCGAAGGCATTCA
76892209 TGCGAGTAGTTG-CTATAC
65 TGC---TAG-TGACTATAC
*
76892227 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCTGGGCTAAGTCCCGAAGGCATTCA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATC-GGGCTAAGTCCCGAAGGCATTCA
*
76892292 TGCTAGTGACTATAT
65 TGCTAGTGACTATAC
* * * *
76892307 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCCGGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCGGGCTAAGTCCCGAAG
76892364 ATACTTGGGT
Statistics
Matches: 125, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
79 16 0.13
80 44 0.35
81 2 0.02
82 1 0.01
83 62 0.50
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCGGGCTAAGTCCCGAAGGCATTCAT
GCTAGTGACTATAC
Found at i:76896468 original size:47 final size:48
Alignment explanation
Indices: 76896382--76896505 Score: 143
Period size: 47 Copynumber: 2.6 Consensus size: 48
76896372 GACGTAAGCT
* *
76896382 AGTGTAAGA-CATGTCTAGGACAT-GCATC-AGCTACTAGATGAT-AGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGAGCTA-TAGATG-TGAGCC
76896428 AGTGTAAGACCATGTCTGGGACATGGCATCGA-CT-TGAGATGTGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGAGCTAT-AGATGTGAGCC
* *
76896475 AGTGTAAGACCGTATCTGGGACATGGCATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
76896506 GCACCTTACC
Statistics
Matches: 69, Mismatches: 4, Indels: 9
0.84 0.05 0.11
Matches are distributed among these distances:
46 11 0.16
47 50 0.72
48 7 0.10
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGAGCTATAGATGTGAGCC
Found at i:76900007 original size:17 final size:17
Alignment explanation
Indices: 76899985--76900020 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
76899975 GCTAAGCATG
*
76899985 GAAAGAAAGAAGAAAAT
1 GAAAGAAAGAAAAAAAT
*
76900002 GAAAGAATGAAAAAAAT
1 GAAAGAAAGAAAAAAAT
76900019 GA
1 GA
76900021 GTTGATGAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.69, C:0.00, G:0.22, T:0.08
Consensus pattern (17 bp):
GAAAGAAAGAAAAAAAT
Found at i:76903139 original size:12 final size:12
Alignment explanation
Indices: 76903122--76903150 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
76903112 AGTTAGTTAG
76903122 TTTTAATTAGGT
1 TTTTAATTAGGT
76903134 TTTTAATTAGGT
1 TTTTAATTAGGT
76903146 TTTTA
1 TTTTA
76903151 TTTTTTTTCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.14, T:0.62
Consensus pattern (12 bp):
TTTTAATTAGGT
Found at i:76904955 original size:23 final size:22
Alignment explanation
Indices: 76904912--76904969 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
76904902 AAAGGATATC
* *
76904912 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
76904933 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
76904956 TGCATATCATATCT
1 TACAAATCATATCT
76904970 AATATTGCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:76904976 original size:19 final size:19
Alignment explanation
Indices: 76904948--76905080 Score: 198
Period size: 19 Copynumber: 6.9 Consensus size: 19
76904938 AATCATATCT
76904948 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
76904967 TCTAATATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
*
76904985 TCTAAGATTGCATATCACA
1 TCTAAGATTGCATATCATA
*
76905004 TCTAAGATTGCATATCACA
1 TCTAAGATTGCATATCATA
76905023 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
76905041 TCTAAGATTGGATCATATCATA
1 TCTAAGATT-G--CATATCATA
76905063 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
76905081 TGAAGATTAT
Statistics
Matches: 105, Mismatches: 4, Indels: 10
0.88 0.03 0.08
Matches are distributed among these distances:
18 31 0.30
19 56 0.53
21 3 0.03
22 15 0.14
ACGTcount: A:0.37, C:0.17, G:0.11, T:0.35
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:76904994 original size:37 final size:38
Alignment explanation
Indices: 76904941--76905080 Score: 198
Period size: 37 Copynumber: 3.7 Consensus size: 38
76904931 ATTACAAAAT
*
76904941 CATATC-T-TCTAAGATTGCATATCATATCTAATATTG
1 CATATCATATCTAAGATTGCATATCATATCTAAGATTG
*
76904977 CA-ATCATATCTAAGATTGCATATCACATCTAAGATTG
1 CATATCATATCTAAGATTGCATATCATATCTAAGATTG
*
76905014 CATATCACATCTAAGATTGCA-ATCATATCTAAGATTGG
1 CATATCATATCTAAGATTGCATATCATATCTAAGATT-G
76905052 ATCATATCATATCTAAGATTGCATATCAT
1 --CATATCATATCTAAGATTGCATATCAT
76905081 TGAAGATTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
35 3 0.03
36 3 0.03
37 43 0.47
38 18 0.20
40 20 0.22
41 5 0.05
ACGTcount: A:0.36, C:0.18, G:0.10, T:0.36
Consensus pattern (38 bp):
CATATCATATCTAAGATTGCATATCATATCTAAGATTG
Found at i:76905012 original size:56 final size:58
Alignment explanation
Indices: 76904948--76905080 Score: 216
Period size: 56 Copynumber: 2.3 Consensus size: 58
76904938 AATCATATCT
*
76904948 TCTAAGATTGCATATCATATCTAATATTGCAATCATATCTAAGATT-G-CATATCACA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGGACATATCACA
* *
76905004 TCTAAGATTGCATATCACATCTAAGATTGCAATCATATCTAAGATTGGATCATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGGA-CATATCACA
76905063 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
76905081 TGAAGATTAT
Statistics
Matches: 70, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
56 44 0.63
57 1 0.01
59 25 0.36
ACGTcount: A:0.37, C:0.17, G:0.11, T:0.35
Consensus pattern (58 bp):
TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGGACATATCACA
Found at i:76905530 original size:44 final size:44
Alignment explanation
Indices: 76905458--76905578 Score: 129
Period size: 45 Copynumber: 2.7 Consensus size: 44
76905448 ATCTTTGATC
** * *
76905458 TGCTCCCCGTCTAATACAGAGACACCAAATCTATT-TTTTCAATCT
1 TGCT-CCCGTCTAATACAGAGATGCCAAATCTATTATCTCCAAT-T
* *
76905503 T-CTTCCCGTCTAATACAGAGATGCCAAATCTGTTATCTCCGATT
1 TGC-TCCCGTCTAATACAGAGATGCCAAATCTATTATCTCCAATT
*
76905547 TGCTCTCCATCTAATACAGAGATGCCAAATCT
1 TGCTC-CCGTCTAATACAGAGATGCCAAATCT
76905579 GTCATCTTGG
Statistics
Matches: 65, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
44 32 0.49
45 33 0.51
ACGTcount: A:0.28, C:0.28, G:0.12, T:0.32
Consensus pattern (44 bp):
TGCTCCCGTCTAATACAGAGATGCCAAATCTATTATCTCCAATT
Found at i:76905893 original size:156 final size:156
Alignment explanation
Indices: 76905609--76905951 Score: 616
Period size: 156 Copynumber: 2.2 Consensus size: 156
76905599 ATGTAAACAC
* * *
76905609 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGATCAGATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAAAGATGCCAAATCATCT
*
76905674 TGGATCTGTTTCAATGAAGGTCCAATTTGTTATGTCTTCGATCTGCTCCCCGTCTAATATAGAGA
66 TGGATCTGTTTCAATGAAGGTCCAATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATATAGAGA
76905739 TGCCAAATCATCTTGGATCTGCTTCA
131 TGCCAAATCATCTTGGATCTGCTTCA
76905765 ATGAAGATCAGATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAAAGATGCCAAATCATCT
1 ATGAAGATCAGATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAAAGATGCCAAATCATCT
*
76905830 TGGATCTGCTTT-AATGAAGGTCCAATCTGTTATTTCTTCGATCTGCTCCCCGTCTAATATAGAG
66 TGGATCTG-TTTCAATGAAGGTCCAATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATATAGAG
76905894 ATGCCAAATCATCTTGGATCTGCTTCA
130 ATGCCAAATCATCTTGGATCTGCTTCA
*
76905921 ATGAAGATCAGATCTGCTGTGTCTTTGATCT
1 ATGAAGATCAGATCTGCTGTGTCTTCGATCT
76905952 ACTTTTCGTT
Statistics
Matches: 180, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
156 177 0.98
157 3 0.02
ACGTcount: A:0.24, C:0.23, G:0.18, T:0.34
Consensus pattern (156 bp):
ATGAAGATCAGATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAAAGATGCCAAATCATCT
TGGATCTGTTTCAATGAAGGTCCAATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATATAGAGA
TGCCAAATCATCTTGGATCTGCTTCA
Found at i:76905967 original size:78 final size:78
Alignment explanation
Indices: 76905609--76905951 Score: 528
Period size: 78 Copynumber: 4.4 Consensus size: 78
76905599 ATGTAAACAC
*
76905609 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATATAGAGATGCCAAATCATCT
*
76905674 TGGATCTGTTTCA
66 TGGATCTGCTTCA
* *
76905687 ATGAAGGTCCA-ATTTGTTATGTCTTCGATCTGCTCCCCGTCTAATATAGAGATGCCAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATATAGAGATGCCAAATCATC
76905751 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
* * * *
76905765 ATGAAGATCAGATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAAAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATATAGAGATGCCAAATCATCT
*
76905830 TGGATCTGCTTTA
66 TGGATCTGCTTCA
* *
76905843 ATGAAGGTCCA-ATCTGTTATTTCTTCGATCTGCTCCCCGTCTAATATAGAGATGCCAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATATAGAGATGCCAAATCATC
76905907 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
* * *
76905921 ATGAAGATCAGATCTGCTGTGTCTTTGATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCT
76905952 ACTTTTCGTT
Statistics
Matches: 238, Mismatches: 23, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
77 4 0.02
78 230 0.97
79 4 0.02
ACGTcount: A:0.24, C:0.23, G:0.18, T:0.34
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATATAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:76906136 original size:87 final size:87
Alignment explanation
Indices: 76906008--76906371 Score: 559
Period size: 87 Copynumber: 4.2 Consensus size: 87
76905998 TCTCTGATAG
** * ** * * *
76906008 TACAGAGATTCCAAATCATCTTAGATCTGCTTCCGCATAAACACGTGAAAGCTAAATCTGCTATG
1 TACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATG
*
76906073 TCTTCGATCTGCTCCCTACCAA
66 TCTTCGATCTGCTCCCTGCCAA
* *
76906095 TACAGAGACGCCAAATCATTTTAGATTTGCTTCAACGTAAACACGTGAAAACCAAATCAGCTATG
1 TACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATG
76906160 TCTTCGATCTGCTCCCTGCCAA
66 TCTTCGATCTGCTCCCTGCCAA
* *
76906182 TACAGAAACGCCAAATCATCTTAGATTTGCTTCAACGTAAACAAGTGAAAGCCAAATCAGCTATG
1 TACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATG
*
76906247 TCTTCGATCTGCTCCCTGTCAA
66 TCTTCGATCTGCTCCCTGCCAA
* *
76906269 TACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGTTATG
1 TACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATG
*
76906334 TCCTCGATCTGCTCCCTGCCAA
66 TCTTCGATCTGCTCCCTGCCAA
*
76906356 TACAGAGA-GTCAAATC
1 TACAGAGACGCCAAATC
76906372 TGCTGTCTTC
Statistics
Matches: 254, Mismatches: 23, Indels: 1
0.91 0.08 0.00
Matches are distributed among these distances:
86 7 0.03
87 247 0.97
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.27
Consensus pattern (87 bp):
TACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATG
TCTTCGATCTGCTCCCTGCCAA
Found at i:76906427 original size:174 final size:173
Alignment explanation
Indices: 76906018--76906451 Score: 522
Period size: 174 Copynumber: 2.5 Consensus size: 173
76906008 TACAGAGATT
* * * * *
76906018 CCAAATCATCTTAGATCTGCTTC-CGCATAAACACGTGAAAGCTAAATCTGCTATGTCTTCGATC
1 CCAAATCATCTTAGATCTGCTTCACG--TAAACAAGAGAAAGCCAAATCAGCTATATCTTCGATC
* * *
76906082 TGCTCCCTACCAATACAGAGACGCCAAATCATTTTAGATTTGCTTCAACGTAAACACGTGAAAAC
64 TGCTCCCTGCCAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAAC
*
76906147 CAAATCAGCTATGTCTTCGATCTGCTCCCTGCCAATACAGAAACG
129 CAAATCAGCTATGTCCTCGATCTGCTCCCTGCCAATACAGAAACG
* * *
76906192 CCAAATCATCTTAGATTTGCTTCAACGTAAACAAGTGAAAGCCAAATCAGCTATGTCTTCGATCT
1 CCAAATCATCTTAGATCTGCTTC-ACGTAAACAAGAGAAAGCCAAATCAGCTATATCTTCGATCT
* *
76906257 GCTCCCTGTCAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCC
65 GCTCCCTGCCAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAACC
* *
76906322 AAATCAGTTATGTCCTCGATCTGCTCCCTGCCAATACAGAGA-G
130 AAATCAGCTATGTCCTCGATCTGCTCCCTGCCAATACAGAAACG
* * * * * *
76906365 TCAAATCTGCTGTCTTCGATCTGCTCTC-TGTCAATAC-AGAG-ATGCCAAATCTG-T-TATCTT
1 CCAAA--T-C-ATCTTAGATCTGCT-TCACGT-AA-ACAAGAGAAAGCCAAATCAGCTATATCTT
*
76906425 CGATCTGCTCTCTGCCAATACAGAGAT
59 CGATCTGCTCCCTGCCAATACAGAGAT
76906452 ATCAAATCTA
Statistics
Matches: 228, Mismatches: 23, Indels: 18
0.85 0.09 0.07
Matches are distributed among these distances:
173 5 0.02
174 186 0.82
175 2 0.01
176 15 0.07
177 16 0.07
178 4 0.02
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (173 bp):
CCAAATCATCTTAGATCTGCTTCACGTAAACAAGAGAAAGCCAAATCAGCTATATCTTCGATCTG
CTCCCTGCCAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAACCA
AATCAGCTATGTCCTCGATCTGCTCCCTGCCAATACAGAAACG
Found at i:76906429 original size:44 final size:44
Alignment explanation
Indices: 76906247--76906547 Score: 269
Period size: 44 Copynumber: 6.9 Consensus size: 44
76906237 ATCAGCTATG
*
76906247 TCTTCGATCTGCTCCCTGTCAATACAGAGATGCCAAATC----A
1 TCTTCGATCTGCTCTCTGTCAATACAGAGATGCCAAATCTGTTA
* * * * * *
76906287 TCTTAGATTTGCT-TCAACGT-AA-ACACGTGAAAGCCAAATCAGTTA
1 TCTTCGATCTGCTCTC--TGTCAATACA-GAG-ATGCCAAATCTGTTA
* * * * * *
76906332 TGTCCTCGATCTGCTCCCTGCCAATACAGAGA-GTCAAATCTGCTG
1 --TCTTCGATCTGCTCTCTGTCAATACAGAGATGCCAAATCTGTTA
76906377 TCTTCGATCTGCTCTCTGTCAATACAGAGATGCCAAATCTGTTA
1 TCTTCGATCTGCTCTCTGTCAATACAGAGATGCCAAATCTGTTA
* ** *
76906421 TCTTCGATCTGCTCTCTGCCAATACAGAGATATCAAATCTATTA
1 TCTTCGATCTGCTCTCTGTCAATACAGAGATGCCAAATCTGTTA
* * * *
76906465 TCTTTGATCTGCTATCTGACAATACAGAGATGCCAAATCTGTCA
1 TCTTCGATCTGCTCTCTGTCAATACAGAGATGCCAAATCTGTTA
* *
76906509 TCTTCGATCTGCT-TCTTGACAATACAGAGACGCCAAATC
1 TCTTCGATCTGCTCTC-TGTCAATACAGAGATGCCAAATC
76906548 ATCTTGGCTC
Statistics
Matches: 210, Mismatches: 36, Indels: 26
0.77 0.13 0.10
Matches are distributed among these distances:
39 4 0.02
40 15 0.07
41 11 0.05
43 29 0.14
44 121 0.58
45 10 0.05
46 2 0.01
47 14 0.07
48 4 0.02
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (44 bp):
TCTTCGATCTGCTCTCTGTCAATACAGAGATGCCAAATCTGTTA
Found at i:76907485 original size:7 final size:7
Alignment explanation
Indices: 76907473--76907524 Score: 63
Period size: 7 Copynumber: 7.4 Consensus size: 7
76907463 GGCCTCTCCA
76907473 TTTTTCT
1 TTTTTCT
76907480 TTTTTCTT
1 TTTTTC-T
76907488 TTTTTCT
1 TTTTTCT
76907495 CTTTTTC-
1 -TTTTTCT
76907502 -TTTTCT
1 TTTTTCT
*
76907508 TTTTTCC
1 TTTTTCT
76907515 TTTTTCT
1 TTTTTCT
76907522 TTT
1 TTT
76907525 ATTTTTAAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
5 5 0.13
7 21 0.54
8 13 0.33
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (7 bp):
TTTTTCT
Found at i:76907490 original size:8 final size:8
Alignment explanation
Indices: 76907473--76907524 Score: 52
Period size: 8 Copynumber: 6.2 Consensus size: 8
76907463 GGCCTCTCCA
76907473 TTTTTC-T
1 TTTTTCTT
76907480 TTTTTCTT
1 TTTTTCTT
*
76907488 TTTTTCTC
1 TTTTTCTT
76907496 TTTTTCTT
1 TTTTTCTT
*
76907504 TTCTTTTTT
1 TT-TTTCTT
76907513 CCTTTTTCTT
1 --TTTTTCTT
76907523 TT
1 TT
76907525 ATTTTTAAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
7 6 0.16
8 19 0.51
9 5 0.14
10 5 0.14
11 2 0.05
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (8 bp):
TTTTTCTT
Found at i:76907517 original size:19 final size:20
Alignment explanation
Indices: 76907481--76907530 Score: 75
Period size: 19 Copynumber: 2.5 Consensus size: 20
76907471 CATTTTTCTT
76907481 TTTTCTTTTTTTCTCTTTTTC
1 TTTTC-TTTTTTCTCTTTTTC
76907502 TTTTCTTTTTTC-CTTTTTC
1 TTTTCTTTTTTCTCTTTTTC
*
76907521 TTTTATTTTT
1 TTTTCTTTTT
76907531 AAAATAGAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
19 16 0.57
20 7 0.25
21 5 0.18
ACGTcount: A:0.02, C:0.16, G:0.00, T:0.82
Consensus pattern (20 bp):
TTTTCTTTTTTCTCTTTTTC
Found at i:76914316 original size:19 final size:19
Alignment explanation
Indices: 76914292--76914404 Score: 160
Period size: 19 Copynumber: 5.9 Consensus size: 19
76914282 AATCAAATCT
76914292 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
76914311 TCTAAGATTGCA-ATCA-A
1 TCTAAGATTGCATATCATA
*
76914328 TCTAAGATTGCATATCACA
1 TCTAAGATTGCATATCATA
76914347 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
76914365 TCTAAGATTGTATCATATCATA
1 TCTAAGATTG---CATATCATA
*
76914387 CCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
76914405 TGAAGATTAT
Statistics
Matches: 86, Mismatches: 2, Indels: 12
0.86 0.02 0.12
Matches are distributed among these distances:
17 13 0.15
18 23 0.27
19 33 0.38
21 2 0.02
22 15 0.17
ACGTcount: A:0.37, C:0.18, G:0.11, T:0.35
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:76914333 original size:36 final size:37
Alignment explanation
Indices: 76914292--76914404 Score: 165
Period size: 36 Copynumber: 3.0 Consensus size: 37
76914282 AATCAAATCT
76914292 TCTAAGATTGCATATCATATCTAAGATTGCAATCA-A
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATA
*
76914328 TCTAAGATTGCATATCACATCTAAGATTGCAATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATA
*
76914365 TCTAAGATTGTATCATATCATACCTAAGATTGCATATCAT
1 TCTAAGATTG---CATATCATATCTAAGATTGCA-ATCAT
76914405 TGAAGATTAT
Statistics
Matches: 69, Mismatches: 3, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
36 34 0.49
37 11 0.16
40 19 0.28
41 5 0.07
ACGTcount: A:0.37, C:0.18, G:0.11, T:0.35
Consensus pattern (37 bp):
TCTAAGATTGCATATCATATCTAAGATTGCAATCATA
Found at i:76914392 original size:59 final size:55
Alignment explanation
Indices: 76914292--76914403 Score: 163
Period size: 59 Copynumber: 2.0 Consensus size: 55
76914282 AATCAAATCT
*
76914292 TCTAAGATTGCATATCATATCTAAGATTGCAATCAATCTAAGATTGCATATCACA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCAACCTAAGATTGCATATCACA
76914347 TCTAAGATTGCA-ATCATATCTAAGATTGTATCATATCATACCTAAGATTGCATATCA
1 TCTAAGATTGCATATCATATCTAAGATTG---CA-ATCA-ACCTAAGATTGCATATCA
76914404 TTGAAGATTA
Statistics
Matches: 51, Mismatches: 1, Indels: 6
0.88 0.02 0.10
Matches are distributed among these distances:
54 16 0.31
55 12 0.24
57 2 0.04
58 4 0.08
59 17 0.33
ACGTcount: A:0.38, C:0.18, G:0.11, T:0.34
Consensus pattern (55 bp):
TCTAAGATTGCATATCATATCTAAGATTGCAATCAACCTAAGATTGCATATCACA
Found at i:76914623 original size:30 final size:30
Alignment explanation
Indices: 76914589--76914651 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
76914579 AAATTGAGTG
*
76914589 TCTACAGATCTGTCACGCCAAAACGGGTAA
1 TCTACAGATCTGTCACGCCAAAACGGATAA
76914619 TCTACAGATCTGTCACGCCAAAACGGATAA
1 TCTACAGATCTGTCACGCCAAAACGGATAA
76914649 TCT
1 TCT
76914652 CTTTCCATAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.33, C:0.27, G:0.17, T:0.22
Consensus pattern (30 bp):
TCTACAGATCTGTCACGCCAAAACGGATAA
Found at i:76916581 original size:14 final size:14
Alignment explanation
Indices: 76916562--76916589 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
76916552 GTAATTGACC
76916562 TAATTGAGCAGTTA
1 TAATTGAGCAGTTA
76916576 TAATTGAGCAGTTA
1 TAATTGAGCAGTTA
76916590 ACTTTACCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.21, T:0.36
Consensus pattern (14 bp):
TAATTGAGCAGTTA
Found at i:76919866 original size:16 final size:16
Alignment explanation
Indices: 76919845--76919875 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
76919835 TAAATTATTA
*
76919845 AAATTTTAATCATAAT
1 AAATTTTAAACATAAT
76919861 AAATTTTAAACATAA
1 AAATTTTAAACATAA
76919876 AACACAAATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (16 bp):
AAATTTTAAACATAAT
Found at i:76932987 original size:31 final size:31
Alignment explanation
Indices: 76932940--76933010 Score: 79
Period size: 31 Copynumber: 2.3 Consensus size: 31
76932930 AAAAAATTAT
** * * *
76932940 TCAATCTTATTTATCTATTTTCTCAATTCTC
1 TCAATCTTATACATCTACTCTCGCAATTCTC
*
76932971 TCAATCTTATACATCTACTCTCGCAATTTTC
1 TCAATCTTATACATCTACTCTCGCAATTCTC
76933002 TCAACTCTT
1 TCAA-TCTT
76933011 TTATTCTTAA
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
31 29 0.88
32 4 0.12
ACGTcount: A:0.24, C:0.27, G:0.01, T:0.48
Consensus pattern (31 bp):
TCAATCTTATACATCTACTCTCGCAATTCTC
Found at i:76938724 original size:21 final size:21
Alignment explanation
Indices: 76938678--76938724 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
76938668 AATTCATTAT
* *
76938678 TAAAACTTTTAAAACAATTTA
1 TAAATCTTTTAAAACAATTCA
* *
76938699 GAAATCTTTTAAAACAATTCC
1 TAAATCTTTTAAAACAATTCA
76938720 TAAAT
1 TAAAT
76938725 GTTCAAAGGT
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.49, C:0.13, G:0.02, T:0.36
Consensus pattern (21 bp):
TAAATCTTTTAAAACAATTCA
Found at i:76955177 original size:13 final size:13
Alignment explanation
Indices: 76955128--76955177 Score: 50
Period size: 13 Copynumber: 3.9 Consensus size: 13
76955118 TTAGCAATAC
76955128 TTTTA-AAAAGTG
1 TTTTAGAAAAGTG
* *
76955140 TTGTGGAAAAGTG
1 TTTTAGAAAAGTG
*
76955153 ATTTT-GAGAAGTG
1 -TTTTAGAAAAGTG
76955166 TTTTAGAAAAGT
1 TTTTAGAAAAGT
76955178 TAGGTTTAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 5
0.75 0.12 0.12
Matches are distributed among these distances:
12 7 0.23
13 20 0.67
14 3 0.10
ACGTcount: A:0.36, C:0.00, G:0.26, T:0.38
Consensus pattern (13 bp):
TTTTAGAAAAGTG
Found at i:76962181 original size:20 final size:20
Alignment explanation
Indices: 76962139--76962195 Score: 80
Period size: 20 Copynumber: 2.8 Consensus size: 20
76962129 GAGGTCAAAG
76962139 AAAATAAAAATAAAACAACTA
1 AAAATAAAAATAAAA-AACTA
*
76962160 AAAACAAAAATAAAAAGA-TA
1 AAAATAAAAATAAAAA-ACTA
76962180 AAAATAAAAATAAAAA
1 AAAATAAAAATAAAAA
76962196 TGAAAAGAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
20 18 0.55
21 15 0.45
ACGTcount: A:0.81, C:0.05, G:0.02, T:0.12
Consensus pattern (20 bp):
AAAATAAAAATAAAAAACTA
Found at i:76962216 original size:5 final size:6
Alignment explanation
Indices: 76962139--76962206 Score: 64
Period size: 6 Copynumber: 10.5 Consensus size: 6
76962129 GAGGTCAAAG
*
76962139 AAAATA AAAATAA AACAACTA AAAACA AAAATAA AAAGATA AAAATA AAAATA
1 AAAATA AAAAT-A AA-AA-TA AAAATA AAAAT-A AAA-ATA AAAATA AAAATA
* *
76962192 AAAATG AAAAGA AAA
1 AAAATA AAAATA AAA
76962207 GAAATAAAAT
Statistics
Matches: 52, Mismatches: 5, Indels: 10
0.78 0.07 0.15
Matches are distributed among these distances:
6 31 0.60
7 13 0.25
8 7 0.13
9 1 0.02
ACGTcount: A:0.79, C:0.04, G:0.04, T:0.12
Consensus pattern (6 bp):
AAAATA
Found at i:76962216 original size:26 final size:26
Alignment explanation
Indices: 76962139--76962215 Score: 91
Period size: 26 Copynumber: 2.9 Consensus size: 26
76962129 GAGGTCAAAG
* * *
76962139 AAAATAAAAATAAAACAACTAAAAACA
1 AAAATAAAAAGAAAA-AAATAAAAATA
*
76962166 AAAATAAAAAGATAAAAATAAAAATA
1 AAAATAAAAAGAAAAAAATAAAAATA
*
76962192 AAAATGAAAAGAAAAGAAATAAAA
1 AAAATAAAAAGAAAA-AAATAAAA
76962216 TTAGTGATCT
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
26 22 0.51
27 21 0.49
ACGTcount: A:0.79, C:0.04, G:0.05, T:0.12
Consensus pattern (26 bp):
AAAATAAAAAGAAAAAAATAAAAATA
Found at i:76963592 original size:5 final size:5
Alignment explanation
Indices: 76963582--76963606 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
76963572 GAACTAAAAT
76963582 AATAA AATAA AATAA AATAA AATAA
1 AATAA AATAA AATAA AATAA AATAA
76963607 TTAATTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
AATAA
Found at i:76963613 original size:4 final size:4
Alignment explanation
Indices: 76963604--76963630 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
76963594 TAAAATAAAA
76963604 TAAT TAAT TAAT TAAT TAAT TAAT TAA
1 TAAT TAAT TAAT TAAT TAAT TAAT TAA
76963631 ATAAAAGCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (4 bp):
TAAT
Found at i:76965927 original size:49 final size:48
Alignment explanation
Indices: 76965858--76965996 Score: 170
Period size: 49 Copynumber: 2.9 Consensus size: 48
76965848 ACCATGGTTA
*
76965858 ATGAGATCCCGTGTAAGACCATGTCTGGGATATGGCATCGACATCCGAG
1 ATGAGATCCCGTGTAAGACCATGTCTGGGATATGGCATCGACA-CCAAG
* ** * *
76965907 ATGAGATCCCGTGTAAGACCATGTCTGGGACATGGCGCCGGCACCAAT
1 ATGAGATCCCGTGTAAGACCATGTCTGGGATATGGCATCGACACCAAG
* * * **
76965955 ATGTGATCCCGTATAAGACCATATCAAGGATATGGCATCGAC
1 ATGAGATCCCGTGTAAGACCATGTCTGGGATATGGCATCGAC
76965997 TTTGATATGT
Statistics
Matches: 75, Mismatches: 15, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
48 36 0.48
49 39 0.52
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.22
Consensus pattern (48 bp):
ATGAGATCCCGTGTAAGACCATGTCTGGGATATGGCATCGACACCAAG
Found at i:76965990 original size:48 final size:48
Alignment explanation
Indices: 76965862--76966086 Score: 155
Period size: 48 Copynumber: 4.7 Consensus size: 48
76965852 TGGTTAATGA
* * ** * * * *
76965862 GATCCCGTGTAAGACCATGTCTGGGATATGGCATCGACATCCGAGATGA
1 GATCCCGTATAAGACCATATCAAGGATATGGCATCGGCA-CCAATATGT
* * ** * **
76965911 GATCCCGTGTAAGACCATGTCTGGGACATGGCGCCGGCACCAATATGT
1 GATCCCGTATAAGACCATATCAAGGATATGGCATCGGCACCAATATGT
* ****
76965959 GATCCCGTATAAGACCATATCAAGGATATGGCATCGACTTTGATATGT
1 GATCCCGTATAAGACCATATCAAGGATATGGCATCGGCACCAATATGT
*** ** * **
76966007 G-TGTTAGTGCAAGACCATGTCTGGGATATGGCATCGGCACCAATATGT
1 GAT-CCCGTATAAGACCATATCAAGGATATGGCATCGGCACCAATATGT
* *
76966055 GATCCTGTATAATACCATATCAAGGATATGGC
1 GATCCCGTATAAGACCATATCAAGGATATGGC
76966087 TTTGGTATCG
Statistics
Matches: 133, Mismatches: 41, Indels: 5
0.74 0.23 0.03
Matches are distributed among these distances:
47 1 0.01
48 96 0.72
49 36 0.27
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (48 bp):
GATCCCGTATAAGACCATATCAAGGATATGGCATCGGCACCAATATGT
Found at i:76966117 original size:96 final size:96
Alignment explanation
Indices: 76965920--76966137 Score: 262
Period size: 96 Copynumber: 2.3 Consensus size: 96
76965910 AGATCCCGTG
**
76965920 TAAGACCATGTCTGGGACATGGCGCCGGCACCAATATGTGATCCCGTATAAGACCATATCAAGGA
1 TAAGACCATGTCTGGGACATGGCATCGGCACCAATATGTGATCCCGTATAAGACCATATCAAGGA
* * *
76965985 TATGGCATCGACTTTGATATGTGTGTTAGTG
66 TATGGCATCGACTTCGATAAGTGTGTTAGTA
* * * *
76966016 CAAGACCATGTCTGGGATATGGCATCGGCACCAATATGTGATCCTGTATAATACCATATCAAGGA
1 TAAGACCATGTCTGGGACATGGCATCGGCACCAATATGTGATCCCGTATAAGACCATATCAAGGA
* * * *
76966081 TATGGCTTTG-GTATCGTTAAGTGAT-TTCA-TA
66 TATGGCATCGACT-TCGATAAGTG-TGTT-AGTA
*
76966112 TAAGACCATGTCTAGGACATGGCATC
1 TAAGACCATGTCTGGGACATGGCATC
76966138 AATATGAGGT
Statistics
Matches: 103, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
95 1 0.01
96 100 0.97
97 2 0.02
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.28
Consensus pattern (96 bp):
TAAGACCATGTCTGGGACATGGCATCGGCACCAATATGTGATCCCGTATAAGACCATATCAAGGA
TATGGCATCGACTTCGATAAGTGTGTTAGTA
Found at i:76966219 original size:12 final size:12
Alignment explanation
Indices: 76966188--76966213 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
76966178 TCGGCACCGA
76966188 TAAGAGACTTCG
1 TAAGAGACTTCG
76966200 TAAGAGACTTCG
1 TAAGAGACTTCG
76966212 TA
1 TA
76966214 TAAGACCATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.27
Consensus pattern (12 bp):
TAAGAGACTTCG
Found at i:76968558 original size:21 final size:22
Alignment explanation
Indices: 76968534--76968588 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 22
76968524 ACATATATTT
76968534 TTAA-TAAAATATTT-AATTAAA
1 TTAATTAAAAT-TTTAAATTAAA
76968555 TTAATTAAAATTTTAAATTAACA
1 TTAATTAAAATTTTAAATTAA-A
76968578 TGTAATTAAAA
1 T-TAATTAAAA
76968589 GAATAAAACA
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
21 7 0.23
22 12 0.40
23 2 0.07
24 9 0.30
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (22 bp):
TTAATTAAAATTTTAAATTAAA
Found at i:76972955 original size:11 final size:11
Alignment explanation
Indices: 76972924--76972948 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
76972914 TGATGTCATT
76972924 TTGCTATTATA
1 TTGCTATTATA
76972935 TTGCTATTATA
1 TTGCTATTATA
76972946 TTG
1 TTG
76972949 TTGTTATTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.08, G:0.12, T:0.56
Consensus pattern (11 bp):
TTGCTATTATA
Found at i:76979927 original size:79 final size:79
Alignment explanation
Indices: 76979796--76979960 Score: 303
Period size: 79 Copynumber: 2.1 Consensus size: 79
76979786 ACTATCAAAA
*
76979796 GCTATGATTGTAGCTGAGTCTTTGCTTGAGATTGTTTCGAGGAAAGACAAGTTCAAGTTTTTCAA
1 GCTATGATTGTAGCTGAGTCTTTGCTTGAGATTGTTTCGAAGAAAGACAAGTTCAAGTTTTTCAA
*
76979861 GCCCAAAGGGAAGG
66 GCCCAAAGGGAAAG
76979875 GCTATGATTGTAGCTGAGTCTTTGCTTGAGATTGTTTCGAAGAAAGACAAGTTCAAGTTTTTCAA
1 GCTATGATTGTAGCTGAGTCTTTGCTTGAGATTGTTTCGAAGAAAGACAAGTTCAAGTTTTTCAA
76979940 GCCCAAAGGGAAAG
66 GCCCAAAGGGAAAG
*
76979954 GCAATGA
1 GCTATGA
76979961 GGGAAGACCA
Statistics
Matches: 83, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
79 83 1.00
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (79 bp):
GCTATGATTGTAGCTGAGTCTTTGCTTGAGATTGTTTCGAAGAAAGACAAGTTCAAGTTTTTCAA
GCCCAAAGGGAAAG
Found at i:76990369 original size:2 final size:2
Alignment explanation
Indices: 76990362--76990389 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
76990352 AGCCTTTGGA
76990362 TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC
76990390 GGTCCTTGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:76993942 original size:42 final size:45
Alignment explanation
Indices: 76993864--76993948 Score: 131
Period size: 42 Copynumber: 2.0 Consensus size: 45
76993854 ATTAAATTTA
*
76993864 ATTTAATATTTATCTTGTAGATAAATATTCTATTAATTTAATAAT
1 ATTTAATATTTATCTTGTAGATAAATATTATATTAATTTAATAAT
*
76993909 ATTTAATATTTATC-T-T-GATAAGTATTATATTAATTTAATA
1 ATTTAATATTTATCTTGTAGATAAATATTATATTAATTTAATA
76993949 TTAAAGTGAT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
42 22 0.58
43 1 0.03
44 1 0.03
45 14 0.37
ACGTcount: A:0.40, C:0.04, G:0.05, T:0.52
Consensus pattern (45 bp):
ATTTAATATTTATCTTGTAGATAAATATTATATTAATTTAATAAT
Found at i:76994881 original size:10 final size:9
Alignment explanation
Indices: 76994866--76994904 Score: 51
Period size: 10 Copynumber: 4.1 Consensus size: 9
76994856 ATATATTTGT
76994866 TTTATAATTA
1 TTTAT-ATTA
*
76994876 TTTATAATA
1 TTTATATTA
76994885 TTTATATTA
1 TTTATATTA
76994894 TGTTATATTA
1 T-TTATATTA
76994904 T
1 T
76994905 AATTTTGATA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
9 12 0.46
10 14 0.54
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.62
Consensus pattern (9 bp):
TTTATATTA
Found at i:76994894 original size:24 final size:24
Alignment explanation
Indices: 76994854--76994919 Score: 59
Period size: 24 Copynumber: 2.8 Consensus size: 24
76994844 ACTCATCTTC
* *
76994854 TTAT-ATATTTGTTTTATAATTAT-
1 TTATAATATTTATATTAT-ATTATA
*
76994877 TTATAATATTTATATTATGTTATA
1 TTATAATATTTATATTATATTATA
76994901 TTATAAT-TTTGATA-TATAT
1 TTATAATATTT-ATATTATAT
76994920 GTATGAGATG
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
23 15 0.42
24 21 0.58
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.61
Consensus pattern (24 bp):
TTATAATATTTATATTATATTATA
Found at i:76996014 original size:16 final size:17
Alignment explanation
Indices: 76995988--76996021 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
76995978 ACTGAGAATA
76995988 ATTTGCTTAATACAAAG
1 ATTTGCTTAATACAAAG
76996005 ATTT-CTTAATACAAAG
1 ATTTGCTTAATACAAAG
76996021 A
1 A
76996022 AAGTAATCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.44, C:0.12, G:0.09, T:0.35
Consensus pattern (17 bp):
ATTTGCTTAATACAAAG
Found at i:77003616 original size:17 final size:17
Alignment explanation
Indices: 77003594--77003628 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
77003584 TTGTTAACAT
77003594 TTTAATGCCCTTTACAC
1 TTTAATGCCCTTTACAC
77003611 TTTAATGCCCTTTACAC
1 TTTAATGCCCTTTACAC
77003628 T
1 T
77003629 ACGGTGCCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.23, C:0.29, G:0.06, T:0.43
Consensus pattern (17 bp):
TTTAATGCCCTTTACAC
Found at i:77007257 original size:53 final size:54
Alignment explanation
Indices: 77007188--77007394 Score: 220
Period size: 53 Copynumber: 3.8 Consensus size: 54
77007178 TTCCTTTTTA
* * * *
77007188 AACTTACCATTTCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * *
77007241 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGAG-ATCTTTGCCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATG-GTATCCTTGCCTTATAG
** * * * * *
77007295 CAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAG
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * *
77007350 AACTTACCAATACCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
77007395 AAACCCTAAT
Statistics
Matches: 124, Mismatches: 26, Indels: 7
0.79 0.17 0.04
Matches are distributed among these distances:
53 44 0.35
54 38 0.31
55 42 0.34
ACGTcount: A:0.21, C:0.25, G:0.17, T:0.37
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:77009226 original size:15 final size:14
Alignment explanation
Indices: 77009192--77009225 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
77009182 ATGATTTTTA
77009192 ATTTTTGTCTAATT
1 ATTTTTGTCTAATT
*
77009206 ATTTTTGTTTAATT
1 ATTTTTGTCTAATT
77009220 ATTTTT
1 ATTTTT
77009226 TATTTTCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.21, C:0.03, G:0.06, T:0.71
Consensus pattern (14 bp):
ATTTTTGTCTAATT
Found at i:77013184 original size:20 final size:20
Alignment explanation
Indices: 77013159--77013199 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
77013149 ATTTATCAAG
77013159 ATAAATATTACATTAAATTT
1 ATAAATATTACATTAAATTT
*
77013179 ATAAATATTAGATTAAATTT
1 ATAAATATTACATTAAATTT
77013199 A
1 A
77013200 ATATTAAATC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (20 bp):
ATAAATATTACATTAAATTT
Found at i:77013283 original size:82 final size:80
Alignment explanation
Indices: 77013155--77013303 Score: 189
Period size: 82 Copynumber: 1.8 Consensus size: 80
77013145 TAATATTTAT
* * *
77013155 CAAGATAAATATTACATTAAATTTATAAATATTAGATTAAATTTAATATTAAATCTTATTAAAAT
1 CAAGATAAACATTAAATTAAATTTATAAATATTAGATTAAATTTAATATTAAA--TTAATAAAAT
77013220 AATAGAATGTTTATCTA
64 AATAGAATGTTTATCTA
77013237 CAAGATAAACATTAAATTAAA-TT-T-AATATTA-ATATAATCACTTTAATATTAAATTAATAAA
1 CAAGATAAACATTAAATTAAATTTATAAATATTAGAT-TAA--A-TTTAATATTAAATTAATAAA
77013298 ATAATA
62 ATAATA
77013304 TTAATATAAA
Statistics
Matches: 60, Mismatches: 3, Indels: 10
0.82 0.04 0.14
Matches are distributed among these distances:
78 2 0.03
79 10 0.17
80 14 0.23
81 3 0.05
82 31 0.52
ACGTcount: A:0.52, C:0.05, G:0.03, T:0.40
Consensus pattern (80 bp):
CAAGATAAACATTAAATTAAATTTATAAATATTAGATTAAATTTAATATTAAATTAATAAAATAA
TAGAATGTTTATCTA
Found at i:77013294 original size:20 final size:18
Alignment explanation
Indices: 77013247--77013353 Score: 78
Period size: 20 Copynumber: 5.8 Consensus size: 18
77013237 CAAGATAAAC
77013247 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
77013264 ATT-AATATAATCACTTTAAT
1 ATTAAAT-TAAT-A-TTTAAT
**
77013284 ATTAAATTAATAAAATAAT
1 ATTAAATTAAT-ATTTAAT
*
77013303 ATTAATATAAATA-TTAA-
1 ATTAA-ATTAATATTTAAT
*
77013320 ATTAAATTTAATATTAAACT
1 ATTAAA-TTAATATTTAA-T
*
77013340 ATTAAAATAATATT
1 ATTAAATTAATATT
77013354 ATTTTTGGAA
Statistics
Matches: 72, Mismatches: 8, Indels: 18
0.73 0.08 0.18
Matches are distributed among these distances:
16 4 0.06
17 16 0.22
18 6 0.08
19 18 0.25
20 25 0.35
21 3 0.04
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:77022285 original size:43 final size:44
Alignment explanation
Indices: 77022174--77022299 Score: 118
Period size: 43 Copynumber: 2.9 Consensus size: 44
77022164 AATGCCAACG
* *
77022174 TCCCAGACGTGGTCTTGCATGT-AATCAAATATCGATGCCACTA
1 TCCCAGACATGGTCTTGCACGTAAATCAAATATCGATGCCACTA
* * * * *
77022217 TCTCAAACAGGGTCTTGCACG-AAATCAAATA-CGATTTCGA-TA
1 TCCCAGACATGGTCTTGCACGTAAATCAAATATCGA-TGCCACTA
* *
77022259 TCCCAGACATGGTCTTACACGTAAATCATAA-GTCGATGCCA
1 TCCCAGACATGGTCTTGCACGTAAATCA-AATATCGATGCCA
77022300 ACGTCTCAGA
Statistics
Matches: 64, Mismatches: 14, Indels: 10
0.73 0.16 0.11
Matches are distributed among these distances:
42 22 0.34
43 37 0.58
44 5 0.08
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (44 bp):
TCCCAGACATGGTCTTGCACGTAAATCAAATATCGATGCCACTA
Found at i:77025114 original size:93 final size:93
Alignment explanation
Indices: 77025004--77025174 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
77024994 GCCCCTAAGT
* *
77025004 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
77025069 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* * *
77025097 GAACTCGGACTCAACTCAATGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
77025162 CGAGTTCGGATGC
66 CGAGTTCGGATGC
77025175 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:77025171 original size:46 final size:46
Alignment explanation
Indices: 77024999--77025171 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
77024989 AACCCGCCCC
* * *
77024999 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* * *
77025045 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* * *
77025093 TCA-CGAACTCGGACTCAACTCAATGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
77025138 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
77025172 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 59 0.57
47 28 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:77025630 original size:30 final size:30
Alignment explanation
Indices: 77025596--77025655 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
77025586 ATTTAATACG
77025596 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
77025626 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
77025656 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:77034403 original size:40 final size:39
Alignment explanation
Indices: 77034359--77034512 Score: 138
Period size: 41 Copynumber: 3.8 Consensus size: 39
77034349 CGATTCTTAA
77034359 CACTGGCTC-AAAGCCCTTCGAGACCAAGCTCGGATTAGG
1 CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGATTA-G
* * *
77034398 CCACTGGCTCGAAGGCCCTTCG-GAACTAAG-TCCGG-TTATG
1 -CACTGGCTCAAAAGCCCTTCGAG-ACCAAGCT-CGGATTA-G
* * *
77034438 ACACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTAG
1 -CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGG--ATTAG
77034480 CACTGGCTCAAAAGCCCTTCGA-ACCCAAGCTCG
1 CACTGGCTCAAAAGCCCTTCGAGA-CCAAGCTCG
77034513 AATGCGATTA
Statistics
Matches: 96, Mismatches: 9, Indels: 17
0.79 0.07 0.14
Matches are distributed among these distances:
40 44 0.46
41 48 0.50
42 1 0.01
43 3 0.03
ACGTcount: A:0.26, C:0.31, G:0.23, T:0.21
Consensus pattern (39 bp):
CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGATTAG
Found at i:77034496 original size:41 final size:41
Alignment explanation
Indices: 77034359--77034502 Score: 170
Period size: 40 Copynumber: 3.6 Consensus size: 41
77034349 CGATTCTTAA
* * *
77034359 CACTGGCTC-AAAGCCCTTCGAGACCAAGCTCGG--ATTAGG
1 CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTA-G
* * * * *
77034398 CCACTGGCTCGAAGGCCCTTCGGAACTAAGTCCGGTTATGA-
1 -CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTAG
77034439 CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTAG
1 CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTAG
77034480 CACTGGCTCAAAAGCCCTTCGAA
1 CACTGGCTCAAAAGCCCTTCGAA
77034503 CCCAAGCTCG
Statistics
Matches: 88, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
40 44 0.50
41 41 0.47
43 3 0.03
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (41 bp):
CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTAG
Found at i:77042808 original size:40 final size:39
Alignment explanation
Indices: 77042764--77042921 Score: 153
Period size: 41 Copynumber: 3.9 Consensus size: 39
77042754 CAATTCTTAA
*
77042764 CACTGGCTC-AAAGCCCTTCGAGACCAAGCTCGGATTAGG
1 CACTGGCTCAAAAGCCCTTCGAAACCAAGCTCGGATTA-G
* * * *
77042803 CCACTGGCTCGAAGGCCCTTCGGAACTAAG-TCCGG-TTATG
1 -CACTGGCTCAAAAGCCCTTCGAAACCAAGCT-CGGATTA-G
* *
77042843 ACACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTAG
1 -CACTGGCTCAAAAGCCCTTCGAAACCAAGCTCGG--ATTAG
77042885 CACTGGCTCAAAAGCCCTTC-AAACCCAAGCTCGGATT
1 CACTGGCTCAAAAGCCCTTCGAAA-CCAAGCTCGGATT
77042922 TACACCCGAT
Statistics
Matches: 100, Mismatches: 11, Indels: 15
0.79 0.09 0.12
Matches are distributed among these distances:
39 3 0.03
40 46 0.46
41 47 0.47
42 1 0.01
43 3 0.03
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.22
Consensus pattern (39 bp):
CACTGGCTCAAAAGCCCTTCGAAACCAAGCTCGGATTAG
Found at i:77042901 original size:41 final size:41
Alignment explanation
Indices: 77042764--77042908 Score: 165
Period size: 40 Copynumber: 3.6 Consensus size: 41
77042754 CAATTCTTAA
* * *
77042764 CACTGGCTC-AAAGCCCTTCGAGACCAAGCTCGG--ATTAGG
1 CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTA-G
* * * * *
77042803 CCACTGGCTCGAAGGCCCTTCGGAACTAAGTCCGGTTATGA-
1 -CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTAG
77042844 CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTAG
1 CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTAG
77042885 CACTGGCTCAAAAGCCCTTC-AAAC
1 CACTGGCTCAAAAGCCCTTCGAAAC
77042909 CCAAGCTCGG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
40 48 0.54
41 38 0.43
43 3 0.03
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (41 bp):
CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTAG
Found at i:77047883 original size:40 final size:40
Alignment explanation
Indices: 77047796--77047972 Score: 243
Period size: 40 Copynumber: 4.5 Consensus size: 40
77047786 AAGCCAAGTA
* * *
77047796 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATA-CTAACTCGCACAAATG
* *
77047834 CCTTCGGGACATAGCCCGGATATACTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATACTAACTCGCACAAATG
* *
77047874 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATACTAACTCGCACAAATG
* *
77047914 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATACTAACTCGCACAAATG
77047954 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
77047973 TTATCATCCG
Statistics
Matches: 125, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
38 13 0.10
39 16 0.13
40 96 0.77
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATACTAACTCGCACAAATG
Found at i:77049819 original size:42 final size:41
Alignment explanation
Indices: 77049731--77049837 Score: 119
Period size: 42 Copynumber: 2.6 Consensus size: 41
77049721 TACAATGTCA
* * * *
77049731 ATGTCTCAGACATGGTCTTA-ATGTAATCAAATATTGTGCC
1 ATGTCCCAGACATGGTCTTACACGAAATCAAATATCGTGCC
*
77049771 ACTGTCCCAGACAGGGTCTTACACGAAATCAAATA-CGATGCC
1 A-TGTCCCAGACATGGTCTTACACGAAATCAAATATCG-TGCC
*
77049813 GATGTCCCAAACATGGTCTTACACG
1 -ATGTCCCAGACATGGTCTTACACG
77049838 TATATCACAA
Statistics
Matches: 56, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
40 1 0.02
41 18 0.32
42 36 0.64
43 1 0.02
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (41 bp):
ATGTCCCAGACATGGTCTTACACGAAATCAAATATCGTGCC
Found at i:77051488 original size:21 final size:21
Alignment explanation
Indices: 77051462--77051515 Score: 108
Period size: 21 Copynumber: 2.6 Consensus size: 21
77051452 CGGCCTTCCT
77051462 ACACGGGCGTGTCCCATATCC
1 ACACGGGCGTGTCCCATATCC
77051483 ACACGGGCGTGTCCCATATCC
1 ACACGGGCGTGTCCCATATCC
77051504 ACACGGGCGTGT
1 ACACGGGCGTGT
77051516 GACCTTTGCT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.19, C:0.35, G:0.28, T:0.19
Consensus pattern (21 bp):
ACACGGGCGTGTCCCATATCC
Found at i:77054765 original size:6 final size:6
Alignment explanation
Indices: 77054747--77054854 Score: 62
Period size: 6 Copynumber: 17.3 Consensus size: 6
77054737 AAGAAACATT
* * *
77054747 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGG ATTAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * *
77054796 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGGTA A-CAGA ATCAAAA
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCA-G-A ATCAGA ATC-AGA
77054847 ATCAGA AT
1 ATCAGA AT
77054855 GTGAATACAA
Statistics
Matches: 79, Mismatches: 11, Indels: 24
0.69 0.10 0.21
Matches are distributed among these distances:
5 6 0.08
6 56 0.71
7 13 0.16
8 4 0.05
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:77054791 original size:31 final size:31
Alignment explanation
Indices: 77054756--77054831 Score: 116
Period size: 31 Copynumber: 2.5 Consensus size: 31
77054746 TATCAGAACT
* *
77054756 AGAATCAGAATCAGAATCAGGATTAGGTGAC
1 AGAATCAGAATCAGAATCAGGATCAGGTAAC
*
77054787 AGAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGGATCAGGTAAC
*
77054818 AGAATCAAAATCAG
1 AGAATCAGAATCAG
77054832 GTAACAGAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.46, C:0.14, G:0.21, T:0.18
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGGATCAGGTAAC
Found at i:77054849 original size:20 final size:19
Alignment explanation
Indices: 77054798--77054851 Score: 81
Period size: 19 Copynumber: 2.8 Consensus size: 19
77054788 GAATCAGAAT
**
77054798 CAGAATCAGTATCAGGTAA
1 CAGAATCAAAATCAGGTAA
77054817 CAGAATCAAAATCAGGTAA
1 CAGAATCAAAATCAGGTAA
77054836 CAGAATCAAAAATCAG
1 CAGAATC-AAAATCAG
77054852 AATGTGAATA
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 24 0.75
20 8 0.25
ACGTcount: A:0.50, C:0.17, G:0.17, T:0.17
Consensus pattern (19 bp):
CAGAATCAAAATCAGGTAA
Found at i:77055033 original size:27 final size:26
Alignment explanation
Indices: 77054991--77055092 Score: 132
Period size: 27 Copynumber: 3.8 Consensus size: 26
77054981 GCTCAGTTAT
*
77054991 CAGATATTGTGACAGAGCCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
77055018 CAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
* *
77055044 TAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAGAGCCACCAG-AA
* *
77055072 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
77055093 TTAACAGAAT
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
26 6 0.09
27 54 0.81
28 7 0.10
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.19
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:77055279 original size:22 final size:22
Alignment explanation
Indices: 77055251--77055315 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
77055241 GCAAATACGT
*
77055251 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
77055273 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
77055295 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
77055316 AAGGCTTTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:77055780 original size:27 final size:27
Alignment explanation
Indices: 77055742--77056072 Score: 473
Period size: 27 Copynumber: 12.3 Consensus size: 27
77055732 GGAGCAAAAT
77055742 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
77055769 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
77055796 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
77055823 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
77055850 GATAATTCTACCCTACAAGAGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
77055877 GATAATTCTACCCTACAGGTGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
77055904 GGTATTTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
77055931 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
77055958 GATAATTCTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
77055985 AGTAATTCTACCCTATAGGTGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
77056012 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
77056039 AGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
77056066 AGTAATT
1 GGTAATT
77056073 TTGTAAATCG
Statistics
Matches: 275, Mismatches: 29, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 275 1.00
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:77056086 original size:27 final size:27
Alignment explanation
Indices: 77056056--77056343 Score: 176
Period size: 27 Copynumber: 10.7 Consensus size: 27
77056046 CTACCCTACA
**
77056056 AGGGTATTTCAGTAATTTTGTAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
*** * * *
77056083 AGGGTAAAACGGTAATTCTATAAATC-
1 AGGGTATTTCAGTAATTTTACAAATCG
* * *
77056109 AGGAGTACTTT-GGTAATTTTACAAGTTG
1 AGG-GTA-TTTCAGTAATTTTACAAATCG
* **
77056137 AGGGTATTTCAATAATTTTACAGGTCG
1 AGGGTATTTCAGTAATTTTACAAATCG
*
77056164 AGGGTATTTCAGTAATTTCACAAATC-
1 AGGGTATTTCAGTAATTTTACAAATCG
** *
77056190 AGGGGTATTTTGGTAATTTTACAAA-CT
1 A-GGGTATTTCAGTAATTTTACAAATCG
** *
77056217 AGGGGTATTTTGGTAATTTTACAAA-CC
1 A-GGGTATTTCAGTAATTTTACAAATCG
* *
77056244 AGGGGTATTTTAGTAATTTTACAAA-CC
1 A-GGGTATTTCAGTAATTTTACAAATCG
** * *
77056271 AGGGGTATTTTGGTAATTTTATAAA-CAA
1 A-GGGTATTTCAGTAATTTTACAAATC-G
* * *
77056299 AGGGTATTTTAGTAATTTTACAAACCA
1 AGGGTATTTCAGTAATTTTACAAATCG
**
77056326 AGGGTATTTTGGTAATTT
1 AGGGTATTTCAGTAATTT
77056344 GATAAACTAA
Statistics
Matches: 221, Mismatches: 32, Indels: 16
0.82 0.12 0.06
Matches are distributed among these distances:
26 8 0.04
27 208 0.94
28 5 0.02
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (27 bp):
AGGGTATTTCAGTAATTTTACAAATCG
Found at i:77056196 original size:54 final size:54
Alignment explanation
Indices: 77056138--77056343 Score: 207
Period size: 54 Copynumber: 3.8 Consensus size: 54
77056128 TACAAGTTGA
* * ** *
77056138 GGGTATTTCAATAATTTTACAGGTCGA-GGGTATTTCAGTAATTTCACAAATCAG
1 GGGTATTTTAGTAATTTTACA-AACGAGGGGTATTTCAGTAATTTCACAAACCAG
* * ** *
77056192 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTAGTAATTTTACAAACGAGGGGTATTTCAGTAATTTCACAAACCAG
* ** * * * *
77056246 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTAGTAATTTTACAAACGAGGGGTATTTCAGTAATTTCACAAACCAG
* * **
77056300 GGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTT
1 GGGTATTTTAGTAATTTTACAAACGAGGGGTATTTCAGTAATTT
77056344 GATAAACTAA
Statistics
Matches: 135, Mismatches: 16, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
53 2 0.01
54 133 0.99
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (54 bp):
GGGTATTTTAGTAATTTTACAAACGAGGGGTATTTCAGTAATTTCACAAACCAG
Found at i:77056223 original size:81 final size:81
Alignment explanation
Indices: 77056104--77056343 Score: 277
Period size: 81 Copynumber: 3.0 Consensus size: 81
77056094 GTAATTCTAT
* * * * * * ***
77056104 AAATCAGGAGTACTTTGGTAATTTTAC-AAGTTGAGGGTATTTCAATAATTTTACAGGTC-GAGG
1 AAATCAGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTAGTAATTTTACAAACCAG-GG
77056167 GTATTTCAGTAATTTCAC
64 GTATTTCAGTAATTTCAC
*
77056185 AAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCAGGGGT
1 AAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAACCAGGGGT
* *
77056250 ATTTTAGTAATTTTAC
66 ATTTCAGTAATTTCAC
* * * * *
77056266 AAACCAGGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAAGGGT
1 AAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAACCAGGGGT
**
77056331 ATTTTGGTAATTT
66 ATTTCAGTAATTT
77056344 GATAAACTAA
Statistics
Matches: 138, Mismatches: 19, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
81 133 0.96
82 5 0.04
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.38
Consensus pattern (81 bp):
AAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAACCAGGGGT
ATTTCAGTAATTTCAC
Found at i:77056350 original size:27 final size:27
Alignment explanation
Indices: 77056165--77056343 Score: 259
Period size: 27 Copynumber: 6.6 Consensus size: 27
77056155 TACAGGTCGA
** * *
77056165 GGGTATTTCAGTAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
77056192 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
77056219 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
77056246 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
77056273 GGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
77056300 GGGTATTTTAGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
77056327 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
77056344 GATAAACTAA
Statistics
Matches: 137, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 137 1.00
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:77059644 original size:40 final size:40
Alignment explanation
Indices: 77059596--77059779 Score: 323
Period size: 40 Copynumber: 4.6 Consensus size: 40
77059586 GCTACTTGCT
** *
77059596 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGAAATAGTAACTCGCA
*
77059636 CAATTGCCTTCGGGACTTAGCCCGGAAATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAATAGTAACTCGCA
*
77059676 CTAATGCCTTCGGGACTTAGCCCGGAAATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAATAGTAACTCGCA
77059716 CAAATGCCTTCGGGACTTAGCCCGGAAATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAATAGTAACTCGCA
77059756 CAAATGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
77059780 TTATCATCCG
Statistics
Matches: 137, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 137 1.00
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAAATAGTAACTCGCA
Found at i:77064051 original size:34 final size:35
Alignment explanation
Indices: 77063970--77064051 Score: 89
Period size: 34 Copynumber: 2.4 Consensus size: 35
77063960 CTTTGTTTGC
* *
77063970 ATACTG-TACTGAAATGGGCTAAGGCCCAGACTTC
1 ATACTGTTACTGAAATGAGCTAAGGCCCAGACTTA
* * *
77064004 CT-CTATTACTGAAATGAGCTTAGGCCCAGAC-TA
1 ATACTGTTACTGAAATGAGCTAAGGCCCAGACTTA
*
77064037 ATACTGTTATTGAAA
1 ATACTGTTACTGAAA
77064052 AAGGGGCTAA
Statistics
Matches: 38, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
33 4 0.11
34 34 0.89
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.28
Consensus pattern (35 bp):
ATACTGTTACTGAAATGAGCTAAGGCCCAGACTTA
Found at i:77068797 original size:37 final size:37
Alignment explanation
Indices: 77068708--77069069 Score: 187
Period size: 37 Copynumber: 9.7 Consensus size: 37
77068698 TGCTCAAAAG
* * * **
77068708 AGCAATGTCTACTGATTATACTGAAAGTTGCTCAAACG
1 AGCAATATCTACTGATTATACTGAATG-TGTTCAAATA
** * * * *
77068746 AGTGATATCCATTGATTATACTGAATGAGTTCAAACA
1 AGCAATATCTACTGATTATACTGAATGTGTTCAAATA
* * * *
77068783 AGCAATGTCTATTGATTATATTGAATGTGCTT-AAATG
1 AGCAATATCTACTGATTATACTGAATGTG-TTCAAATA
* * * *
77068820 AGCAATATATACTGA-AACTACTTAATGTG--CAAAAA
1 AGCAATATCTACTGATTA-TACTGAATGTGTTCAAATA
* * *
77068855 GAGCAATGTCTACTGATTATACTGAAAGTTGCTCAAATA
1 -AGCAATATCTACTGATTATACTGAATG-TGTTCAAATA
* * * *
77068894 AGCAATATCCACTGATTATATTGAATGGGTTCAAATG
1 AGCAATATCTACTGATTATACTGAATGTGTTCAAATA
* * * *
77068931 AGCAATATCTACTGAATATACTAAACGTGCTCAAA-A
1 AGCAATATCTACTGATTATACTGAATGTGTTCAAATA
* * * * * * **
77068967 GAGAAATGTCTATTGATTATATTGAAAGTTTCTCAAACG
1 -AGCAATATCTACTGATTATACTGAATGTGT-TCAAATA
* * * * **
77069006 AG-AGATATCCACTAATTATACTGAATGGGCTCAAACG
1 AGCA-ATATCTACTGATTATACTGAATGTGTTCAAATA
* * *
77069043 AGCAATATATACTAATTATACGGAATG
1 AGCAATATCTACTGATTATACTGAATG
77069070 CATGCTCAAA
Statistics
Matches: 243, Mismatches: 68, Indels: 27
0.72 0.20 0.08
Matches are distributed among these distances:
35 3 0.01
36 21 0.09
37 143 0.59
38 71 0.29
39 5 0.02
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.31
Consensus pattern (37 bp):
AGCAATATCTACTGATTATACTGAATGTGTTCAAATA
Found at i:77068965 original size:74 final size:74
Alignment explanation
Indices: 77068687--77068992 Score: 259
Period size: 74 Copynumber: 4.1 Consensus size: 74
77068677 GAATACTAAA
* * ** **
77068687 TATATTGAACGTGCTCAAAAGAGCAATGTCTACTGATTATACTGAAAGTTGCTCAAACGAGTGAT
1 TATATTGAATG-GTTCAAAAGAGCAATGTCTACTGATTATACTGAAAGTTGCTCAAATAAGCAAT
*
77068752 ATCCATTGAT
65 ATCCACTGAT
* * * * * *
77068762 TATACTGAATGAGTTCAAACA-AGCAATGTCTATTGATTATATTGAATG-TGCTTAAATGAGCAA
1 TATATTGAATG-GTTCAAA-AGAGCAATGTCTACTGATTATACTGAAAGTTGCTCAAATAAGCAA
**
77068825 TATATACTGA-
64 TATCCACTGAT
* *
77068835 AACTACTT-AAT-GTGCAAAAAGAGCAATGTCTACTGATTATACTGAAAGTTGCTCAAATAAGCA
1 TA-TA-TTGAATGGTTC-AAAAGAGCAATGTCTACTGATTATACTGAAAGTTGCTCAAATAAGCA
77068898 ATATCCACTGAT
63 ATATCCACTGAT
* * * *
77068910 TATATTGAATGGGTTCAAATGAGCAATATCTACTGAATATACT-AAACG-TGCTCAAA-AGAGAA
1 TATATTGAAT-GGTTCAAAAGAGCAATGTCTACTGATTATACTGAAA-GTTGCTCAAATA-AGCA
* * *
77068972 ATGTCTATTGAT
63 ATATCCACTGAT
77068984 TATATTGAA
1 TATATTGAA
77068993 AGTTTCTCAA
Statistics
Matches: 186, Mismatches: 33, Indels: 25
0.76 0.14 0.10
Matches are distributed among these distances:
72 4 0.02
73 31 0.17
74 81 0.44
75 66 0.35
76 4 0.02
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.31
Consensus pattern (74 bp):
TATATTGAATGGTTCAAAAGAGCAATGTCTACTGATTATACTGAAAGTTGCTCAAATAAGCAATA
TCCACTGAT
Found at i:77069014 original size:112 final size:111
Alignment explanation
Indices: 77068758--77069063 Score: 343
Period size: 112 Copynumber: 2.8 Consensus size: 111
77068748 TGATATCCAT
* * * * * * *
77068758 TGATTATACTGAATG-AGTTCAAACAAGCAATGTCTATTGATTATATTGAATGTGCTT-AAATGA
1 TGATTATACTGAAAGTTGCTCAAACAAGCAATATCCACTGATTATATTGAATG-GGTTCAAATGA
* * *
77068821 GCAATATATACTGAA-ACTACTTAATGTGCAAAAAGAGCAATGTCTAC
65 GCAATATATACTGAATA-TACTAAACGTGCAAAAAGAGAAATGTCTAC
*
77068868 TGATTATACTGAAAGTTGCTCAAATAAGCAATATCCACTGATTATATTGAATGGGTTCAAATGAG
1 TGATTATACTGAAAGTTGCTCAAACAAGCAATATCCACTGATTATATTGAATGGGTTCAAATGAG
* * *
77068933 CAATATCTACTGAATATACTAAACGTGCTCAAAAGAGAAATGTCTAT
66 CAATATATACTGAATATACTAAACGTGC-AAAAAGAGAAATGTCTAC
* * * * * * *
77068980 TGATTATATTGAAAGTTTCTCAAACGAG-AGATATCCACTAATTATACTGAATGGGCTCAAACGA
1 TGATTATACTGAAAGTTGCTCAAACAAGCA-ATATCCACTGATTATATTGAATGGGTTCAAATGA
77069044 GCAATATATACT-AATTATAC
65 GCAATATATACTGAA-TATAC
77069064 GGAATGCATG
Statistics
Matches: 167, Mismatches: 23, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
110 17 0.10
111 64 0.38
112 86 0.51
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.31
Consensus pattern (111 bp):
TGATTATACTGAAAGTTGCTCAAACAAGCAATATCCACTGATTATATTGAATGGGTTCAAATGAG
CAATATATACTGAATATACTAAACGTGCAAAAAGAGAAATGTCTAC
Found at i:77069100 original size:39 final size:37
Alignment explanation
Indices: 77068998--77069093 Score: 122
Period size: 37 Copynumber: 2.5 Consensus size: 37
77068988 TTGAAAGTTT
*
77068998 CTCAAACGAG-AGATATCCACTAATTATACTGAATGGG
1 CTCAAACGAGCA-ATATCCACTAATTATACGGAATGGG
** *
77069035 CTCAAACGAGCAATATATACTAATTATACGGAATGCATG
1 CTCAAACGAGCAATATCCACTAATTATACGGAATG--GG
77069074 CTCAAACGAGCAATATCCAC
1 CTCAAACGAGCAATATCCAC
77069094 AGATTATGTG
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
37 30 0.60
38 1 0.02
39 19 0.38
ACGTcount: A:0.40, C:0.22, G:0.16, T:0.23
Consensus pattern (37 bp):
CTCAAACGAGCAATATCCACTAATTATACGGAATGGG
Found at i:77073181 original size:34 final size:34
Alignment explanation
Indices: 77073138--77073206 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
77073128 AGTTTAGAAG
77073138 TAAGGTTAGGTTTTTTTTTTCGGCTTTTCATAAC
1 TAAGGTTAGGTTTTTTTTTTCGGCTTTTCATAAC
77073172 TAAGGTTAGGTTTTTTTTTTCGGCTTTTCATAAC
1 TAAGGTTAGGTTTTTTTTTTCGGCTTTTCATAAC
77073206 T
1 T
77073207 CTTTTATTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.17, C:0.12, G:0.17, T:0.54
Consensus pattern (34 bp):
TAAGGTTAGGTTTTTTTTTTCGGCTTTTCATAAC
Found at i:77073773 original size:18 final size:18
Alignment explanation
Indices: 77073752--77073789 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
77073742 AATCATTTGC
77073752 TTATTTT-TCTTATTTATT
1 TTATTTTAT-TTATTTATT
77073770 TTATTTTATTTATTTATT
1 TTATTTTATTTATTTATT
77073788 TT
1 TT
77073790 TATACTATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 18 0.95
19 1 0.05
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (18 bp):
TTATTTTATTTATTTATT
Found at i:77073790 original size:14 final size:13
Alignment explanation
Indices: 77073752--77073792 Score: 55
Period size: 14 Copynumber: 3.0 Consensus size: 13
77073742 AATCATTTGC
*
77073752 TTATTTTTCTTAT
1 TTATTTTTTTTAT
77073765 TTATTTTATTTTAT
1 TTATTTT-TTTTAT
77073779 TTATTTATTTTTAT
1 TTATTT-TTTTTAT
77073793 ACTATTAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
13 7 0.28
14 17 0.68
15 1 0.04
ACGTcount: A:0.20, C:0.02, G:0.00, T:0.78
Consensus pattern (13 bp):
TTATTTTTTTTAT
Found at i:77073798 original size:19 final size:19
Alignment explanation
Indices: 77073761--77073808 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 19
77073751 CTTATTTTTC
**
77073761 TTATTTA-TTTTATTTTAT
1 TTATTTATTTTTATACTAT
77073779 TTATTTATTTTTATACTAT
1 TTATTTATTTTTATACTAT
* *
77073798 TAATATATTTT
1 TTATTTATTTT
77073809 ATGGTTTATT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
18 7 0.28
19 18 0.72
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (19 bp):
TTATTTATTTTTATACTAT
Found at i:77076343 original size:49 final size:49
Alignment explanation
Indices: 77076276--77076370 Score: 181
Period size: 49 Copynumber: 1.9 Consensus size: 49
77076266 GGTTTATTAG
*
77076276 GCCATATGAAATTTTTGACTGAATTGAGCCTATAGCATGTTGTTTACCT
1 GCCATATGAAATTCTTGACTGAATTGAGCCTATAGCATGTTGTTTACCT
77076325 GCCATATGAAATTCTTGACTGAATTGAGCCTATAGCATGTTGTTTA
1 GCCATATGAAATTCTTGACTGAATTGAGCCTATAGCATGTTGTTTA
77076371 GCTCTACCTC
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.27, C:0.16, G:0.19, T:0.38
Consensus pattern (49 bp):
GCCATATGAAATTCTTGACTGAATTGAGCCTATAGCATGTTGTTTACCT
Found at i:77082354 original size:12 final size:12
Alignment explanation
Indices: 77082339--77082433 Score: 77
Period size: 12 Copynumber: 7.8 Consensus size: 12
77082329 TTATCAAAAC
77082339 TAGAATCAGAAT
1 TAGAATCAGAAT
* *
77082351 TAGAATTAG-GT
1 TAGAATCAGAAT
*
77082362 GACAGAATCAGAAT
1 TA--GAATCAGAAT
*
77082376 CAGAATCAGAAT
1 TAGAATCAGAAT
*
77082388 CAGAATCAGAAT
1 TAGAATCAGAAT
*
77082400 TAG-GTGACAGAAT
1 TAGAAT--CAGAAT
77082413 TAGAATCAGAAT
1 TAGAATCAGAAT
*
77082425 TAGTATCAG
1 TAGAATCAG
77082434 GTAACAGAAT
Statistics
Matches: 67, Mismatches: 10, Indels: 12
0.75 0.11 0.13
Matches are distributed among these distances:
11 3 0.04
12 46 0.69
13 15 0.22
14 3 0.04
ACGTcount: A:0.45, C:0.11, G:0.21, T:0.23
Consensus pattern (12 bp):
TAGAATCAGAAT
Found at i:77082373 original size:6 final size:6
Alignment explanation
Indices: 77082364--77082455 Score: 80
Period size: 6 Copynumber: 15.0 Consensus size: 6
77082354 AATTAGGTGA
* *
77082364 CAGAAT CAGAAT CAGAAT CAGAAT CAGAAT CAGAAT TAG-GT GACAGAAT
1 CAGAAT CAGAAT CAGAAT CAGAAT CAGAAT CAGAAT CAGAAT --CAGAAT
* * * *
77082413 TAGAAT CAGAAT TAGTAT CAGGTAA- CAGAAT CAAAAT CAGAAT
1 CAGAAT CAGAAT CAGAAT CA-G-AAT CAGAAT CAGAAT CAGAAT
77082456 ATGAATGCAA
Statistics
Matches: 68, Mismatches: 12, Indels: 12
0.74 0.13 0.13
Matches are distributed among these distances:
5 3 0.04
6 58 0.85
7 5 0.07
8 2 0.03
ACGTcount: A:0.48, C:0.13, G:0.18, T:0.21
Consensus pattern (6 bp):
CAGAAT
Found at i:77082401 original size:43 final size:43
Alignment explanation
Indices: 77082340--77082433 Score: 152
Period size: 43 Copynumber: 2.2 Consensus size: 43
77082330 TATCAAAACT
*
77082340 AGAATCAGAATTAGAATTAGGTGACAGAATCAGAATCAGAATC
1 AGAATCAGAATCAGAATTAGGTGACAGAATCAGAATCAGAATC
* *
77082383 AGAATCAGAATCAGAATTAGGTGACAGAATTAGAATCAGAATT
1 AGAATCAGAATCAGAATTAGGTGACAGAATCAGAATCAGAATC
*
77082426 AGTATCAG
1 AGAATCAG
77082434 GTAACAGAAT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 47 1.00
ACGTcount: A:0.46, C:0.11, G:0.21, T:0.22
Consensus pattern (43 bp):
AGAATCAGAATCAGAATTAGGTGACAGAATCAGAATCAGAATC
Found at i:77082411 original size:31 final size:31
Alignment explanation
Indices: 77082364--77082455 Score: 107
Period size: 31 Copynumber: 3.0 Consensus size: 31
77082354 AATTAGGTGA
77082364 CAGAATCA-G-AATCAGAATCAGAATCAGAAT
1 CAGAATCAGGTAA-CAGAATCAGAATCAGAAT
* * *
77082394 CAGAATTAGGTGACAGAATTAGAATCAGAAT
1 CAGAATCAGGTAACAGAATCAGAATCAGAAT
* * *
77082425 TAGTATCAGGTAACAGAATCAAAATCAGAAT
1 CAGAATCAGGTAACAGAATCAGAATCAGAAT
77082456 ATGAATGCAA
Statistics
Matches: 51, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
30 7 0.14
31 43 0.84
32 1 0.02
ACGTcount: A:0.48, C:0.13, G:0.18, T:0.21
Consensus pattern (31 bp):
CAGAATCAGGTAACAGAATCAGAATCAGAAT
Found at i:77082622 original size:27 final size:26
Alignment explanation
Indices: 77082574--77082633 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
77082564 GCGAGGCTGC
*
77082574 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
77082601 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
77082627 CAGATAT
1 CAGATAT
77082634 ATATATATGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:77082646 original size:33 final size:32
Alignment explanation
Indices: 77082595--77082658 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
77082585 ACGAAGTCAC
* *
77082595 CAGATACAGATATTGTGGCTAGGCCACCAGAA
1 CAGATACAGATATTGTGGCGAAGCCACCAGAA
* *
77082627 CAGATATATATATATGTGGCGAAGCCACCAGA
1 CAGATACAGATAT-TGTGGCGAAGCCACCAGA
77082659 TTGCAGCGAG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.20
Consensus pattern (32 bp):
CAGATACAGATATTGTGGCGAAGCCACCAGAA
Found at i:77083020 original size:27 final size:26
Alignment explanation
Indices: 77082989--77083254 Score: 208
Period size: 27 Copynumber: 9.6 Consensus size: 26
77082979 ACTCCACAAT
* * *
77082989 GGTATCTCGGTAATTCTACCTTATAG
1 GGTATTTCGGTAATTCTACCCTAAAG
* *
77083015 GAGTATTTCAGTAATTCTACCCTACAGG
1 G-GTATTTCGGTAATTCTACCCTA-AAG
*
77083043 GGTATTTCGGTATTTCTACCCTACAAG
1 GGTATTTCGGTAATTCTACCCTA-AAG
*
77083070 GGTATTTCGGTAATTCTATCCTACAAG
1 GGTATTTCGGTAATTCTACCCTA-AAG
**
77083097 GGTATTTTAGTAATTCTACCCTACAAG
1 GGTATTTCGGTAATTCTACCCTA-AAG
* * *
77083124 GGTATTTCGGTATTTCTACCGTACAGG
1 GGTATTTCGGTAATTCTACCCTA-AAG
* *
77083151 GGTATTTCAGTATTTTGGTATTTCTACCCTATAGG
1 GGTATTTC--------GGTAATTCTACCCTA-AAG
* *
77083186 GGTATTTCGGTATTTCTAGCCTACAAG
1 GGTATTTCGGTAATTCTACCCTA-AAG
* * *
77083213 GGTATTTCGGCATTTCTACCGTACAAG
1 GGTATTTCGGTAATTCTACCCTA-AAG
77083240 GGTATTTCGGTAATT
1 GGTATTTCGGTAATT
77083255 TTGTAAATCA
Statistics
Matches: 202, Mismatches: 28, Indels: 19
0.81 0.11 0.08
Matches are distributed among these distances:
26 1 0.00
27 174 0.86
28 2 0.01
35 25 0.12
ACGTcount: A:0.23, C:0.18, G:0.20, T:0.38
Consensus pattern (26 bp):
GGTATTTCGGTAATTCTACCCTAAAG
Found at i:77083053 original size:54 final size:54
Alignment explanation
Indices: 77082989--77083254 Score: 264
Period size: 54 Copynumber: 4.8 Consensus size: 54
77082979 ACTCCACAAT
* * * *
77082989 GGTATCTCGGTAATTCTACCTTA-TAGGAGTATTTCAGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAAGG-GTATTTCGGTAATTCTACCCTACAGG
* * *
77083043 GGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTATCCTACAAG
1 GGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGG
** * *
77083097 GGTATTTTAGTAATTCTACCCTACAAGGGTATTTCGGTATTTCTACCGTACAGG
1 GGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGG
* * * * * *
77083151 GGTATTTCAGTATTTTGGTATTTCTACCCTATAGGGGTATTTCGGTATTTCTAGCCTACAAG
1 GGTATTTC--------GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGG
* * *
77083213 GGTATTTCGGCATTTCTACCGTACAAGGGTATTTCGGTAATT
1 GGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTAATT
77083255 TTGTAAATCA
Statistics
Matches: 176, Mismatches: 27, Indels: 18
0.80 0.12 0.08
Matches are distributed among these distances:
54 126 0.72
55 3 0.02
62 47 0.27
ACGTcount: A:0.23, C:0.18, G:0.20, T:0.38
Consensus pattern (54 bp):
GGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGG
Found at i:77083102 original size:81 final size:79
Alignment explanation
Indices: 77082984--77083254 Score: 299
Period size: 81 Copynumber: 3.3 Consensus size: 79
77082974 ATTTTACTCC
* * * *
77082984 ACAATGGTATCTCGGTAATTCTACCTTATAGGAGTATTTCAGTAATTCTACCCTACAGGGGTATT
1 ACAAGGGTATTTCGGTAATTCTACC-TAAAGG-GTATTTCAGTAATTCTACCCTACAAGGGTATT
*
77083049 TCGGTATTTCTACCCT
64 TCGGTATTTCTACCGT
*
77083065 ACAAGGGTATTTCGGTAATTCTATCCTACAAGGGTATTTTAGTAATTCTACCCTACAAGGGTATT
1 ACAAGGGTATTTCGGTAATTCTA-CCTA-AAGGGTATTTCAGTAATTCTACCCTACAAGGGTATT
77083130 TCGGTATTTCTACCGT
64 TCGGTATTTCTACCGT
* * * * * *
77083146 ACAGGGGTATTTCAGTATTTTGGTATTTCTACCCTATAGGGGTATTTCGGTATTTCTAGCCTACA
1 ACAAGGGTATTTC--------GGTAATTCTA-CCTA-AAGGGTATTTCAGTAATTCTACCCTACA
*
77083211 AGGGTATTTCGGCATTTCTACCGT
56 AGGGTATTTCGGTATTTCTACCGT
77083235 ACAAGGGTATTTCGGTAATT
1 ACAAGGGTATTTCGGTAATT
77083255 TTGTAAATCA
Statistics
Matches: 162, Mismatches: 18, Indels: 20
0.81 0.09 0.10
Matches are distributed among these distances:
81 86 0.53
82 5 0.03
89 71 0.44
ACGTcount: A:0.24, C:0.18, G:0.20, T:0.38
Consensus pattern (79 bp):
ACAAGGGTATTTCGGTAATTCTACCTAAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTC
GGTATTTCTACCGT
Found at i:77083164 original size:35 final size:35
Alignment explanation
Indices: 77083125--77083201 Score: 118
Period size: 35 Copynumber: 2.2 Consensus size: 35
77083115 CCCTACAAGG
*
77083125 GTATTTCGGTATTTCTACCGTACAGGGGTATTTCA
1 GTATTTCGGTATTTCTACCCTACAGGGGTATTTCA
* * *
77083160 GTATTTTGGTATTTCTACCCTATAGGGGTATTTCG
1 GTATTTCGGTATTTCTACCCTACAGGGGTATTTCA
77083195 GTATTTC
1 GTATTTC
77083202 TAGCCTACAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.18, C:0.16, G:0.22, T:0.44
Consensus pattern (35 bp):
GTATTTCGGTATTTCTACCCTACAGGGGTATTTCA
Found at i:77083176 original size:62 final size:62
Alignment explanation
Indices: 77083098--77083220 Score: 185
Period size: 62 Copynumber: 2.0 Consensus size: 62
77083088 TCCTACAAGG
*
77083098 GTATTTTAGTAATTCTACCCTACAAGGGTATTTCGGTATTTCTA-CCGTACAGGGGTATTTCA
1 GTATTTTAGTAATTCTACCCTACAAGGGTATTTCGGTATTTCTAGCC-TACAAGGGTATTTCA
* * * *
77083160 GTATTTTGGTATTTCTACCCTATAGGGGTATTTCGGTATTTCTAGCCTACAAGGGTATTTC
1 GTATTTTAGTAATTCTACCCTACAAGGGTATTTCGGTATTTCTAGCCTACAAGGGTATTTC
77083221 GGCATTTCTA
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
62 53 0.96
63 2 0.04
ACGTcount: A:0.22, C:0.17, G:0.20, T:0.41
Consensus pattern (62 bp):
GTATTTTAGTAATTCTACCCTACAAGGGTATTTCGGTATTTCTAGCCTACAAGGGTATTTCA
Found at i:77083209 original size:89 final size:89
Alignment explanation
Indices: 77083071--77083257 Score: 257
Period size: 89 Copynumber: 2.1 Consensus size: 89
77083061 CCCTACAAGG
* * * *
77083071 GTATTTCGGTAATTCTATCCTACAAGGGTATTTTAGTAATTCTACCCTACAAGGGTATTTCGGTA
1 GTATTTTGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGGCA
*
77083136 TTTCTACCGTACAGGGGTATTTCA
66 TTTCTACCGTACAAGGGTATTTCA
* * * * * *
77083160 GTATTTTGGTATTTCTACCCTATAGGGGTATTTCGGTATTTCTAGCCTACAAGGGTATTTCGGCA
1 GTATTTTGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGGCA
*
77083225 TTTCTACCGTACAAGGGTATTTCG
66 TTTCTACCGTACAAGGGTATTTCA
77083249 GTAATTTTG
1 GT-ATTTTG
77083258 TAAATCAAGG
Statistics
Matches: 85, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
89 79 0.93
90 6 0.07
ACGTcount: A:0.22, C:0.17, G:0.21, T:0.40
Consensus pattern (89 bp):
GTATTTTGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGGCA
TTTCTACCGTACAAGGGTATTTCA
Found at i:77083278 original size:116 final size:116
Alignment explanation
Indices: 77083044--77083278 Score: 285
Period size: 116 Copynumber: 2.0 Consensus size: 116
77083034 CCCTACAGGG
* * *
77083044 GTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTATCCTACAAGGGTATTTTAGTA
1 GTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTAGCCTACAAGGGTATTTCAGCA
** * ***
77083109 ATTCTACCCTACAAGGGTATTTCGGTATTTCTACCGTACAGGGGTATTTCA
66 ATTCTACCCTACAAGGGTATTTCGGTATTTCTACAATACAAGGGTAAAACA
* * * * *
77083160 GTATTTTGGTATTTCTACCCTATAGGGGTATTTCGGTATTTCTAGCCTACAAGGGTATTTCGGCA
1 GTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTAGCCTACAAGGGTATTTCAGCA
* * *
77083225 TTTCTACCGTACAAGGGTATTTCGGTAATTTTGTA-AAT-CAAGGGTAAAACA
66 ATTCTACCCTACAAGGGTATTTCGGT-A-TTTCTACAATACAAGGGTAAAACA
77083276 GTA
1 GTA
77083279 ATTCTATAAA
Statistics
Matches: 100, Mismatches: 17, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
116 93 0.93
117 2 0.02
118 5 0.05
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.37
Consensus pattern (116 bp):
GTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTAGCCTACAAGGGTATTTCAGCA
ATTCTACCCTACAAGGGTATTTCGGTATTTCTACAATACAAGGGTAAAACA
Found at i:77083306 original size:27 final size:27
Alignment explanation
Indices: 77083276--77083633 Score: 374
Period size: 27 Copynumber: 13.3 Consensus size: 27
77083266 GGGTAAAACA
* * * *
77083276 GTAATTCTATAAATCAAGGGTACTTTG
1 GTAATTTTACAAACCAAGGGTATTTTG
** * * *
77083303 GTAATTTTACAAGTCGAGGGTTTTTTA
1 GTAATTTTACAAACCAAGGGTATTTTG
* *** * **
77083330 ATAATTTTACAGGTCGAGGGTATTTCA
1 GTAATTTTACAAACCAAGGGTATTTTG
* * *
77083357 GTAATTTCACAAATCAGGGGTATTTTG
1 GTAATTTTACAAACCAAGGGTATTTTG
** *
77083384 GTAATTTTACAAATTAGGGGTATTTTG
1 GTAATTTTACAAACCAAGGGTATTTTG
* *
77083411 ATAATTTTACAAACCAGGGGTATTTTG
1 GTAATTTTACAAACCAAGGGTATTTTG
* *
77083438 GTAATTTTACAAACCAGGGGGATTTTG
1 GTAATTTTACAAACCAAGGGTATTTTG
* * *
77083465 GTAATTTTATAAACAAAGGGTATTTTA
1 GTAATTTTACAAACCAAGGGTATTTTG
*
77083492 GTAATTTTACAAACCAGGGGTATTTTG
1 GTAATTTTACAAACCAAGGGTATTTTG
** *
77083519 GTAATTTTGTAAACCAAGGGTGTTTTG
1 GTAATTTTACAAACCAAGGGTATTTTG
*
77083546 GTAATTTTACAAACCAGGGGTATTTTG
1 GTAATTTTACAAACCAAGGGTATTTTG
* * *
77083573 GTGATTTTATAAACCAAGGGTATTTTA
1 GTAATTTTACAAACCAAGGGTATTTTG
*
77083600 GTAATTTTACAAACCAGGGGTATTTTG
1 GTAATTTTACAAACCAAGGGTATTTTG
77083627 GTAATTT
1 GTAATTT
77083634 GGTAAGCTAA
Statistics
Matches: 280, Mismatches: 51, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 280 1.00
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAAACCAAGGGTATTTTG
Found at i:77083449 original size:54 final size:54
Alignment explanation
Indices: 77083347--77083633 Score: 412
Period size: 54 Copynumber: 5.3 Consensus size: 54
77083337 TACAGGTCGA
** * * * * **
77083347 GGGTATTTCAGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAATTAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAACCAG
* * *
77083401 GGGTATTTTGATAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAACCAG
* * *
77083455 GGGGATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAACCAG
* *
77083509 GGGTATTTTGGTAATTTTGTAAACCAAGGGTGTTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAACCAG
* *
77083563 GGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAACCAG
77083617 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
77083634 GGTAAGCTAA
Statistics
Matches: 210, Mismatches: 23, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 210 1.00
ACGTcount: A:0.31, C:0.09, G:0.22, T:0.39
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAACCAG
Found at i:77085436 original size:19 final size:20
Alignment explanation
Indices: 77085400--77085437 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
77085390 TAAATAAACA
77085400 ACTTTTGTGAAAGGAATGGT
1 ACTTTTGTGAAAGGAATGGT
*
77085420 ACTTTTGT-AAAGTAATGG
1 ACTTTTGTGAAAGGAATGG
77085438 AAATTTTAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.32, C:0.05, G:0.26, T:0.37
Consensus pattern (20 bp):
ACTTTTGTGAAAGGAATGGT
Found at i:77085444 original size:19 final size:20
Alignment explanation
Indices: 77085402--77085444 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 20
77085392 AATAAACAAC
* *
77085402 TTTTGTGAAAGGAATGGTAC
1 TTTTGTGAAAGGAATGGAAA
*
77085422 TTTTGT-AAAGTAATGGAAA
1 TTTTGTGAAAGGAATGGAAA
77085441 TTTT
1 TTTT
77085445 AGGTTGCTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 14 0.70
20 6 0.30
ACGTcount: A:0.33, C:0.02, G:0.23, T:0.42
Consensus pattern (20 bp):
TTTTGTGAAAGGAATGGAAA
Found at i:77085554 original size:30 final size:30
Alignment explanation
Indices: 77085518--77085574 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
77085508 ATCGATTTTC
** *
77085518 AAGTCTAGGGGTAAAATGTTCATTTTGTGA
1 AAGTCTAGGGACAAAATGGTCATTTTGTGA
77085548 AAGTCTAGGGACAAAATGGTCATTTTG
1 AAGTCTAGGGACAAAATGGTCATTTTG
77085575 CCAAAAAATG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.32, C:0.09, G:0.26, T:0.33
Consensus pattern (30 bp):
AAGTCTAGGGACAAAATGGTCATTTTGTGA
Found at i:77086067 original size:46 final size:46
Alignment explanation
Indices: 77085956--77086073 Score: 136
Period size: 46 Copynumber: 2.5 Consensus size: 46
77085946 AGAGCCAGCA
* *
77085956 TAAGACATGTCTGGGACATGCATCAACTTGAGAGATGCAAGTCAGTG
1 TAAGACATGTCTAGGACATGCATCGACTTGAGAGATG-AAGTCAGTG
*
77086003 TAAGACATGT-TTGAGACATGCATCGACATTGAGACGA-G-AG-CTAGTG
1 TAAGACATGTCTAG-GACATGCATCGAC-TTGAGA-GATGAAGTC-AGTG
77086049 TAAGACATGTCTAGGACATGCATCG
1 TAAGACATGTCTAGGACATGCATCG
77086074 GTCTCGAGAT
Statistics
Matches: 63, Mismatches: 3, Indels: 11
0.82 0.04 0.14
Matches are distributed among these distances:
45 1 0.02
46 29 0.46
47 24 0.38
48 7 0.11
49 2 0.03
ACGTcount: A:0.32, C:0.17, G:0.27, T:0.24
Consensus pattern (46 bp):
TAAGACATGTCTAGGACATGCATCGACTTGAGAGATGAAGTCAGTG
Found at i:77086197 original size:49 final size:46
Alignment explanation
Indices: 77086045--77086214 Score: 146
Period size: 49 Copynumber: 3.5 Consensus size: 46
77086035 GACGAGAGCT
* * * *
77086045 AGTGTAAGACATGTCTAGGACATG-CATCGGTCTCGAGATATACAAGC
1 AGTGTAAGACCTGTCTGGGACATGACATC-GCCTCGATATATA-AAGC
* * *
77086092 TAGTGTAATACCTGTCTCGGACATGACATCGACACT-GATAGATAAGAGCC
1 -AGTGTAAGACCTGTCTGGGACATGACATCG-C-CTCGATATATAA-AG-C
* *
77086142 AATGTAAGACCTGTCTGGGACACGACATCAGCCTCGATATATGAAAGTC
1 AGTGTAAGACCTGTCTGGGACATGACATC-GCCTCGATATAT-AAAG-C
*
77086191 AGTGTAAGACCTGTCTGGGGCATG
1 AGTGTAAGACCTGTCTGGGACATG
77086215 GCGTCGGCAT
Statistics
Matches: 99, Mismatches: 15, Indels: 15
0.77 0.12 0.12
Matches are distributed among these distances:
48 25 0.25
49 68 0.69
50 6 0.06
ACGTcount: A:0.31, C:0.21, G:0.25, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACCTGTCTGGGACATGACATCGCCTCGATATATAAAGC
Found at i:77094012 original size:48 final size:46
Alignment explanation
Indices: 77093920--77094026 Score: 142
Period size: 48 Copynumber: 2.3 Consensus size: 46
77093910 GATATGCTTG
* *
77093920 GGACATGCATCGGCATTGAGATTAGAGCTAGTGTAAGACATGTCTA
1 GGACATGCATCGGCATAGAGATTAAAGCTAGTGTAAGACATGTCTA
* * *
77093966 GGACATGCATCGGCCTAGAGATATACAAGCTAGTGTAAGACCTGTCTG
1 GGACATGCATCGGCATAGAGAT-TA-AAGCTAGTGTAAGACATGTCTA
77094014 GGACATGGCATCG
1 GGACAT-GCATCG
77094027 ACGCCGATAG
Statistics
Matches: 53, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
46 20 0.38
47 2 0.04
48 25 0.47
49 6 0.11
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (46 bp):
GGACATGCATCGGCATAGAGATTAAAGCTAGTGTAAGACATGTCTA
Found at i:77094049 original size:49 final size:49
Alignment explanation
Indices: 77093938--77094119 Score: 149
Period size: 49 Copynumber: 3.8 Consensus size: 49
77093928 ATCGGCATTG
* * * * *
77093938 AGATTAGAGCTAGTGTAAGACATGTCTAGGACAT-GCATCG--GCCTAG
1 AGATGAGAGCTAGTGTAAGACCTGTCTGGGACATGGCATCGACGCCGAT
* *
77093984 AGATATACAAGCTAGTGTAAGACCTGTCTGGGACATGGCATCGACGCCGAT
1 AGAT-GA-GAGCTAGTGTAAGACCTGTCTGGGACATGGCATCGACGCCGAT
* * * * ***
77094035 AGATGAGAGCTAGTGTAAGACTTGTCGGGGACACGACATCGACTTTGAT
1 AGATGAGAGCTAGTGTAAGACCTGTCTGGGACATGGCATCGACGCCGAT
** *
77094084 -G-TGCTAGCCAGTGTAAGACCATGTCTGGGACATGGC
1 AGATGAGAGCTAGTGTAAGACC-TGTCTGGGACATGGC
77094120 GCCATCATCT
Statistics
Matches: 109, Mismatches: 21, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
46 4 0.04
47 17 0.16
48 38 0.35
49 41 0.38
50 1 0.01
51 8 0.07
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (49 bp):
AGATGAGAGCTAGTGTAAGACCTGTCTGGGACATGGCATCGACGCCGAT
Found at i:77099639 original size:120 final size:120
Alignment explanation
Indices: 77099407--77099665 Score: 312
Period size: 120 Copynumber: 2.2 Consensus size: 120
77099397 TTGAATGATG
* *
77099407 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* **
77099472 GTGCGAGTTACTAAATCCAGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTAAA
66 GTGCGAGTTACTAAATCCAGGCTAAGTCCCGAAGGCATTTGAACGAG-TAGCTAAA
* * * **
77099527 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * *
77099590 TTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATA
64 TTGTGCGAGTTACTA-AATCCAGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTAAA
* *
77099647 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
77099666 TACGTGATTT
Statistics
Matches: 120, Mismatches: 15, Indels: 9
0.83 0.10 0.06
Matches are distributed among these distances:
119 17 0.14
120 94 0.78
121 9 0.08
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTAAATCCAGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTAAA
Found at i:77099646 original size:40 final size:40
Alignment explanation
Indices: 77099407--77099632 Score: 314
Period size: 40 Copynumber: 5.7 Consensus size: 40
77099397 TTGAATGATG
* * * * *
77099407 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
**
77099447 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
77099487 TCCAGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
77099527 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
77099567 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
77099608 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
77099633 AACGAGTAGC
Statistics
Matches: 171, Mismatches: 11, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
39 1 0.01
40 160 0.94
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:77107568 original size:40 final size:40
Alignment explanation
Indices: 77107437--77107606 Score: 258
Period size: 39 Copynumber: 4.3 Consensus size: 40
77107427 GGACTAAGAT
*
77107437 CGAAGGCATTTGTGTGAGTTACTAAAT-CGGGTTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCC
77107476 CGAAGGCATTTGTG-GAGTTACTAAATCCGGGTTAAGT-C
1 CGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCC
*
77107514 CGAAGGAATTTGTGCGAGTTACTAAATCCGGGTTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCC
* *
77107554 CGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTAGTGTCC
1 CGAAGGCATTTGTGCGAGTTACTA-AATCCGGGTTA-AGTCC
77107595 CGAAGGCATTTG
1 CGAAGGCATTTG
77107607 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 4, Indels: 8
0.91 0.03 0.06
Matches are distributed among these distances:
38 26 0.21
39 47 0.39
40 31 0.25
41 18 0.15
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.28
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCC
Found at i:77118163 original size:39 final size:39
Alignment explanation
Indices: 77118101--77118278 Score: 212
Period size: 39 Copynumber: 4.7 Consensus size: 39
77118091 AGCTACTGCT
77118101 CAAATGCCTT-GGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTA-CCCGGTTATAGTAACTCGCA
77118140 CAAATGCCTTCGGGACTTACCCGGTT-TAGTAACTCGCCA
1 CAAATGCCTTCGGGACTTACCCGGTTATAGTAACTCG-CA
*
77118179 CAAATGCCTTCGGGACTTA-CCGGATATAGT-ACTCGCA
1 CAAATGCCTTCGGGACTTACCCGGTTATAGTAACTCGCA
* * * * *
77118216 CAAATGCCTTC-GG-CTAAGCCGG-AATAGTCACTAGCA
1 CAAATGCCTTCGGGACTTACCCGGTTATAGTAACTCGCA
77118252 CAAATGCCTT--GGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTA-CCCGGTTAT
77118279 CATTCCAAAT
Statistics
Matches: 124, Mismatches: 7, Indels: 17
0.84 0.05 0.11
Matches are distributed among these distances:
35 10 0.08
36 25 0.20
37 17 0.14
38 22 0.18
39 42 0.34
40 8 0.06
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTACCCGGTTATAGTAACTCGCA
Done.