Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 224 of 295
Found at i:77126019 original size:40 final size:40
Alignment explanation
Indices: 77125975--77126162 Score: 281
Period size: 40 Copynumber: 4.7 Consensus size: 40
77125965 GCTACTTGCT
*
77125975 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
77126015 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
77126055 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
** * *
77126095 CAAATGCCTTCGGG-CTTAGCCC-GAAATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
*
77126134 CAAATACCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
77126163 CATCCAAATA
Statistics
Matches: 135, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
38 3 0.02
39 30 0.22
40 100 0.74
41 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:77130762 original size:101 final size:100
Alignment explanation
Indices: 77130587--77130805 Score: 296
Period size: 101 Copynumber: 2.2 Consensus size: 100
77130577 AAAGGATGAA
* * * *
77130587 TTGAACGTAAGACTATGGTTGGAACATGACAGTATTTTTATGTAAGACCATAGCTAGGCTATGAC
1 TTGAACGTAAGACCATGGTTGGAACATGACACTATTTATATGTAAGACCATAGATAGGCTATGAC
*
77130652 ATTTTAATGA-AAAGACCATAACTGGGTTATGGCACC
66 ATTCTAATGATAAA-ACCATAACTGGGTTATGGCA-C
* * * **
77130688 TTGAACGTAAGACCATGGTTGGACCATGACACTATTTATATGTAAGACCATAGATGGGTTATGGG
1 TTGAACGTAAGACCATGGTTGGAACATGACACTATTTATATGTAAGACCATAGATAGGCTATGAC
77130753 ATTCTAATGATAAAACCATAACTGGGTTATGGCAC
66 ATTCTAATGATAAAACCATAACTGGGTTATGGCAC
* * *
77130788 TAGGATGTAAGACCATGG
1 TTGAACGTAAGACCATGG
77130806 AAGGGCCATG
Statistics
Matches: 104, Mismatches: 13, Indels: 3
0.87 0.11 0.03
Matches are distributed among these distances:
100 16 0.15
101 85 0.82
102 3 0.03
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.29
Consensus pattern (100 bp):
TTGAACGTAAGACCATGGTTGGAACATGACACTATTTATATGTAAGACCATAGATAGGCTATGAC
ATTCTAATGATAAAACCATAACTGGGTTATGGCAC
Found at i:77135439 original size:35 final size:35
Alignment explanation
Indices: 77135380--77135531 Score: 214
Period size: 35 Copynumber: 4.3 Consensus size: 35
77135370 AATCCTTCCA
* * *
77135380 AAACACACCAAATTCTCACAAGAGCTAGTCCAACCG
1 AAACACGCC-AATGCTCATAAGAGCTAGTCCAACCG
* *
77135416 AAACACGCCAATACTCATAAGAGCTAGTCCAACCA
1 AAACACGCCAATGCTCATAAGAGCTAGTCCAACCG
***
77135451 AAACACGCCAATGCTCATAAGAGCTAGTCCAGTTG
1 AAACACGCCAATGCTCATAAGAGCTAGTCCAACCG
*
77135486 AAACACGCCAATGCTCATCAGAGCTAGTCCAACCG
1 AAACACGCCAATGCTCATAAGAGCTAGTCCAACCG
77135521 AAACACGCCAA
1 AAACACGCCAA
77135532 ACATAGAGTA
Statistics
Matches: 103, Mismatches: 13, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
35 95 0.92
36 8 0.08
ACGTcount: A:0.39, C:0.32, G:0.14, T:0.14
Consensus pattern (35 bp):
AAACACGCCAATGCTCATAAGAGCTAGTCCAACCG
Found at i:77136628 original size:16 final size:16
Alignment explanation
Indices: 77136607--77136639 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
77136597 TCTCAATTAA
77136607 TAATTAAGTCATTTAG
1 TAATTAAGTCATTTAG
77136623 TAATTAAGTCATTTAG
1 TAATTAAGTCATTTAG
77136639 T
1 T
77136640 CACTAAATGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.36, C:0.06, G:0.12, T:0.45
Consensus pattern (16 bp):
TAATTAAGTCATTTAG
Found at i:77140247 original size:40 final size:40
Alignment explanation
Indices: 77140192--77140416 Score: 312
Period size: 40 Copynumber: 5.6 Consensus size: 40
77140182 TATTCGGATG
77140192 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
77140232 ATATCCAGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
77140272 ATATCCGGGCGAAGTCCCGAAGGCATTTGTGCGAGTAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC---TAG-TGACT
*
77140315 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * * *
77140355 ATATCCGGGCTAAGACCCAAAGGCATGTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
77140395 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
77140417 TACTTGGGTT
Statistics
Matches: 166, Mismatches: 13, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
39 15 0.09
40 112 0.67
41 2 0.01
43 35 0.21
44 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:77140347 original size:83 final size:80
Alignment explanation
Indices: 77140192--77140416 Score: 330
Period size: 83 Copynumber: 2.8 Consensus size: 80
77140182 TATTCGGATG
77140192 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-TAG-TGACTATATCCAGGCTAAGTCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGTAGTTG-CTATATCC-GGCTAAGTCCCGAAGG
77140255 CATTTGTGCTAGTGACT
64 CATTTGTGCTAGTGACT
* *
77140272 ATATCCGGGCGAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCTATACCCGGGCTAAGTCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC--GTAGTTGCTATATCC-GGCTAAGTCCCGAAG
77140337 GCATTTGTGCTAGTGACT
63 GCATTTGTGCTAGTGACT
* * * *
77140355 ATATCCGGGCTAAGACCCAAAGGCATGTGTGCG-AGTTGCTATATCCGGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGTAGTTGCTATATCCGGCTAAGTCCCGAAGG
77140417 TACTTGGGTT
Statistics
Matches: 132, Mismatches: 9, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
79 15 0.11
80 43 0.33
81 1 0.01
83 71 0.54
84 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGTAGTTGCTATATCCGGCTAAGTCCCGAAGGCA
TTTGTGCTAGTGACT
Found at i:77148577 original size:40 final size:40
Alignment explanation
Indices: 77148522--77148746 Score: 276
Period size: 40 Copynumber: 5.6 Consensus size: 40
77148512 TATTCGGATG
77148522 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
77148562 ATATCCGGTCTAAGTCCCAAAGGCATTTGTGTTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
77148602 ATATCCGGGCGAAGTCCCGAAGGCATTTGTGCGAGTAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC---TAG-TGACT
** *
77148645 ATGCCCAGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
77148685 ATATCCGGGCTAAGACCCGAAGGCATGTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
* *
77148725 ATATCC-AGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
77148747 TACTTGGGTT
Statistics
Matches: 159, Mismatches: 20, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
39 15 0.09
40 107 0.67
41 2 0.01
43 33 0.21
44 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:77148686 original size:83 final size:83
Alignment explanation
Indices: 77148522--77148720 Score: 282
Period size: 83 Copynumber: 2.4 Consensus size: 83
77148512 TATTCGGATG
*
77148522 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC---TAGTGACTATATCCGGTCTAAGTCCCAAAG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTGACTATACCCGGTCTAAGTCCCAAAG
*
77148584 GCATTTGTGTTAGTGACT
66 GCATTTGTGCTAGTGACT
* * *
77148602 ATATCCGGGCGAAGTCCCGAAGGCATTTGTGCGAGTAGTTG-CTATGCCCAGG-CTAAGTCCCGA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAG-TGACTATACCC-GGTCTAAGTCCCAA
77148665 AGGCATTTGTGCTAGTGACT
64 AGGCATTTGTGCTAGTGACT
* *
77148685 ATATCCGGGCTAAGACCCGAAGGCATGTGTGCGAGT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
77148721 TGCTATATCC
Statistics
Matches: 106, Mismatches: 8, Indels: 7
0.88 0.07 0.06
Matches are distributed among these distances:
80 31 0.29
83 71 0.67
84 4 0.04
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (83 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTGACTATACCCGGTCTAAGTCCCAAAG
GCATTTGTGCTAGTGACT
Found at i:77148765 original size:83 final size:79
Alignment explanation
Indices: 77148522--77148746 Score: 249
Period size: 83 Copynumber: 2.8 Consensus size: 79
77148512 TATTCGGATG
* * *
77148522 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACTATATCCGGTCTAAGTCCCAAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTG-CTATATCCAG-CTAAGTCCCGAAGGC
*
77148586 ATTTGTGTT-AGTGACT
64 ATTGGT-TTGAGTGACT
* **
77148602 ATATCCGGGCGAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCTATGCCCAGGCTAAGTCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC--G-AGTTGCTATATCCA-GCTAAGTCCCGAAG
* *
77148667 GCATTTGTGCT-AGTGACT
62 GCATTGGT-TTGAGTGACT
* * *
77148685 ATATCCGGGCTAAGACCCGAAGGCATGTGTGCGAGTTGCTATATCCAGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCCAGCTAAGTCCCGAAGG
77148747 TACTTGGGTT
Statistics
Matches: 127, Mismatches: 13, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
79 14 0.11
80 43 0.34
81 1 0.01
83 66 0.52
84 3 0.02
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (79 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCCAGCTAAGTCCCGAAGGCAT
TGGTTTGAGTGACT
Found at i:77154670 original size:19 final size:18
Alignment explanation
Indices: 77154648--77154687 Score: 71
Period size: 19 Copynumber: 2.2 Consensus size: 18
77154638 TGAATAAAAC
77154648 TTATCTACCTAAATAAGAT
1 TTATCTACCTAAATAA-AT
77154667 TTATCTACCTAAATAAAT
1 TTATCTACCTAAATAAAT
77154685 TTA
1 TTA
77154688 AAATATATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.42, C:0.15, G:0.03, T:0.40
Consensus pattern (18 bp):
TTATCTACCTAAATAAAT
Found at i:77175463 original size:8 final size:8
Alignment explanation
Indices: 77175452--77175483 Score: 64
Period size: 8 Copynumber: 4.0 Consensus size: 8
77175442 TATTCTATTA
77175452 TATAATAT
1 TATAATAT
77175460 TATAATAT
1 TATAATAT
77175468 TATAATAT
1 TATAATAT
77175476 TATAATAT
1 TATAATAT
77175484 ACTTTATTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (8 bp):
TATAATAT
Found at i:77179843 original size:40 final size:40
Alignment explanation
Indices: 77179785--77179967 Score: 303
Period size: 40 Copynumber: 4.6 Consensus size: 40
77179775 ATTTGAATAC
77179785 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
*
77179825 ATACGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
*
77179865 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* * *
77179905 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* *
77179945 ACCCGGGTTAAGACCCGAAGGCA
1 ATCCGGGCTAAGACCCGAAGGCA
77179968 ATTGAGCTTG
Statistics
Matches: 134, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 134 1.00
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
Found at i:77182158 original size:38 final size:38
Alignment explanation
Indices: 77182116--77182260 Score: 157
Period size: 38 Copynumber: 3.8 Consensus size: 38
77182106 ACACCGAAAA
* ** **
77182116 TAAGCCTACTAGGCAGTAAGCTTGAATAACACCAGAAC
1 TAAGCCTGCTAGGCACAAAGCTCAAATAACACCAGAAC
* *
77182154 TAAGCCTGCTAGGCACAAAGCTCAAATAACACCGGTAC
1 TAAGCCTGCTAGGCACAAAGCTCAAATAACACCAGAAC
* * *
77182192 TAAGCCTGCTAGGCACAAAAC-CTAAATAACACCGGCAC
1 TAAGCCTGCTAGGCACAAAGCTC-AAATAACACCAGAAC
* * *
77182230 TAAGCCTGATAGGCACAAAGCCCGAATAACA
1 TAAGCCTGCTAGGCACAAAGCTCAAATAACA
77182261 ATATAATTCA
Statistics
Matches: 93, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
37 1 0.01
38 91 0.98
39 1 0.01
ACGTcount: A:0.39, C:0.28, G:0.18, T:0.15
Consensus pattern (38 bp):
TAAGCCTGCTAGGCACAAAGCTCAAATAACACCAGAAC
Found at i:77190321 original size:45 final size:45
Alignment explanation
Indices: 77190225--77190441 Score: 323
Period size: 45 Copynumber: 4.9 Consensus size: 45
77190215 TCGAATTCAT
* * *
77190225 TCACCGGCATT-TCGCCTGCTAGGCTC-AAGGCTCAAATAATATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
77190268 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAAT-ATCATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAAT-ATC
*
77190313 TTACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
* * * *
77190358 TTACTGGCATTATAGCCTGCTAGGCTAAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
*
77190403 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCTGAAT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAAT
77190442 TGTACTGTAC
Statistics
Matches: 159, Mismatches: 11, Indels: 6
0.90 0.06 0.03
Matches are distributed among these distances:
43 11 0.07
44 16 0.10
45 130 0.82
46 2 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
Found at i:77190367 original size:90 final size:90
Alignment explanation
Indices: 77190183--77190441 Score: 343
Period size: 90 Copynumber: 2.9 Consensus size: 90
77190173 TTTTATCAAA
* * * * *
77190183 TCACTGGCATT-CAGCCTGCTAGGTTTAAAA-ACTCGAAT-TCAT-TCACCGGCATT-TCGCCTG
1 TCACTGGCATTATAGCCTGCTAGG-CTAAAAGGCCCGAATATCATCTCACCGGCATTATAGCCTG
* *
77190243 CTAGGCTC-AAGGCTCAAATAATATC
65 CTAGGCTCAAAGGCCCGAATAATATC
* * *
77190268 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATATCATCTTACCGGCATTATAGCCTGC
1 TCACTGGCATTATAGCCTGCTAGGCTAAAAGGCCCGAATATCATCTCACCGGCATTATAGCCTGC
77190333 TAGGCTCAAAGGCCCGAATAATATC
66 TAGGCTCAAAGGCCCGAATAATATC
*
77190358 TTACTGGCATTATAGCCTGCTAGGCTAAAAGGCCCGAATAGT-ATCTCACCGGCATTATAGCCTG
1 TCACTGGCATTATAGCCTGCTAGGCTAAAAGGCCCGAATA-TCATCTCACCGGCATTATAGCCTG
*
77190422 CTAGGCTCAAAGGCCTGAAT
65 CTAGGCTCAAAGGCCCGAAT
77190442 TGTACTGTAC
Statistics
Matches: 152, Mismatches: 15, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
85 14 0.09
86 17 0.11
87 4 0.03
88 10 0.07
89 14 0.09
90 92 0.61
91 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (90 bp):
TCACTGGCATTATAGCCTGCTAGGCTAAAAGGCCCGAATATCATCTCACCGGCATTATAGCCTGC
TAGGCTCAAAGGCCCGAATAATATC
Found at i:77193634 original size:42 final size:42
Alignment explanation
Indices: 77193506--77193634 Score: 127
Period size: 42 Copynumber: 3.0 Consensus size: 42
77193496 CACACAGTAC
* * *
77193506 CATACCAATGCCATATCCCAGATAAGGTCTTACATGTAATCT
1 CATATCAATGCCATATCCCAGATATGGTCTTACACGTAATCT
* * * ** * *
77193548 CGTATCGATGCCAATAGCTTA-ACTATGGTCTTATAC-AAAGTCT
1 CATATCAATGCC-ATATCCCAGA-TATGGTCTTACACGTAA-TCT
77193591 CATATCAATGCCATATCCCAGATATGGTCTTACACGTAATCT
1 CATATCAATGCCATATCCCAGATATGGTCTTACACGTAATCT
77193633 CA
1 CA
77193635 GTAACCTTAA
Statistics
Matches: 65, Mismatches: 17, Indels: 10
0.71 0.18 0.11
Matches are distributed among these distances:
42 34 0.52
43 31 0.48
ACGTcount: A:0.32, C:0.25, G:0.13, T:0.30
Consensus pattern (42 bp):
CATATCAATGCCATATCCCAGATATGGTCTTACACGTAATCT
Found at i:77198851 original size:45 final size:45
Alignment explanation
Indices: 77198798--77198885 Score: 149
Period size: 45 Copynumber: 2.0 Consensus size: 45
77198788 CTATGTGATC
* *
77198798 TGAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTGGCATA
1 TGAACTCATTGAGTTATGGTCTAAGTTCATGATATATGTGGCATA
*
77198843 TGAACTCATTGAGTTATGGTCTAAGTTCATGATGTATGTGGCA
1 TGAACTCATTGAGTTATGGTCTAAGTTCATGATATATGTGGCA
77198886 CATGTTTTGG
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.25, C:0.11, G:0.26, T:0.38
Consensus pattern (45 bp):
TGAACTCATTGAGTTATGGTCTAAGTTCATGATATATGTGGCATA
Found at i:77202760 original size:25 final size:25
Alignment explanation
Indices: 77202704--77202762 Score: 73
Period size: 25 Copynumber: 2.4 Consensus size: 25
77202694 TAGCTCTTAT
*
77202704 GAGCTTACTGATACTTAGCTCGCAT
1 GAGCTTACTGATACTTAGCTCGCAA
* * * *
77202729 GAACTTACTGTTATTTAGCTCGGAA
1 GAGCTTACTGATACTTAGCTCGCAA
77202754 GAGCTTACT
1 GAGCTTACT
77202763 ATTTATAGAT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.34
Consensus pattern (25 bp):
GAGCTTACTGATACTTAGCTCGCAA
Found at i:77208621 original size:20 final size:19
Alignment explanation
Indices: 77208596--77208642 Score: 60
Period size: 20 Copynumber: 2.5 Consensus size: 19
77208586 AAGGGCTATT
77208596 TTGTAAATTTGTAAAATAA
1 TTGTAAATTTGTAAAATAA
* *
77208615 GTTGTAAATGTGTGAAATAA
1 -TTGTAAATTTGTAAAATAA
77208635 TTG-AAATT
1 TTGTAAATT
77208643 GTGAGTTGCT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 4 0.17
19 3 0.12
20 17 0.71
ACGTcount: A:0.43, C:0.00, G:0.17, T:0.40
Consensus pattern (19 bp):
TTGTAAATTTGTAAAATAA
Found at i:77213154 original size:30 final size:30
Alignment explanation
Indices: 77213101--77213157 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
77213091 ACGGGCATGA
* *
77213101 CACACGGGCATGTGGTCTGCCCGTGTGCCT
1 CACACAGGCATGTGGTCTACCCGTGTGCCT
77213131 CACACAGGCATGTGGATC-ACCCGTGTG
1 CACACAGGCATGTGG-TCTACCCGTGTG
77213158 GAAGTGCCTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 22 0.92
31 2 0.08
ACGTcount: A:0.16, C:0.32, G:0.32, T:0.21
Consensus pattern (30 bp):
CACACAGGCATGTGGTCTACCCGTGTGCCT
Found at i:77222670 original size:79 final size:82
Alignment explanation
Indices: 77222559--77222743 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
77222549 GCTACTCGTT
* * *
77222559 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
77222622 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
77222639 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
77222702 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
77222719 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
77222744 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:77222743 original size:40 final size:40
Alignment explanation
Indices: 77222540--77222743 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
77222530 CGGAATTTAA
** *
77222540 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
77222580 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
77222620 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
77222659 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
77222699 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
77222739 CCGGA
1 CCGGA
77222744 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:77229697 original size:39 final size:40
Alignment explanation
Indices: 77229576--77229760 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
77229566 GCTACTCGTT
*
77229576 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* * *
77229616 CAATTGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
77229656 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
77229695 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
*
77229736 CAAA-GCCTTCCGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
77229761 CATCATTCAA
Statistics
Matches: 123, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 76 0.62
41 13 0.11
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:77238539 original size:21 final size:21
Alignment explanation
Indices: 77238496--77238539 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
77238486 AGTTTGATTG
* *
77238496 AATTGAAATTGCTAAAATTAA
1 AATTAAAATTGCTAAAATAAA
77238517 AATTAAAATTG-TAAAGATAAA
1 AATTAAAATTGCTAAA-ATAAA
77238538 AA
1 AA
77238540 AAGTTGAGGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.59, C:0.02, G:0.09, T:0.30
Consensus pattern (21 bp):
AATTAAAATTGCTAAAATAAA
Found at i:77239259 original size:10 final size:10
Alignment explanation
Indices: 77239244--77239282 Score: 62
Period size: 10 Copynumber: 3.9 Consensus size: 10
77239234 TAAAATTCTA
77239244 AAAGATAAAT
1 AAAGATAAAT
77239254 AAAGATAAAT
1 AAAGATAAAT
77239264 -AAGAATAAAT
1 AAAG-ATAAAT
77239274 AAAGATAAA
1 AAAGATAAA
77239283 AGCTAAAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
9 3 0.11
10 21 0.78
11 3 0.11
ACGTcount: A:0.72, C:0.00, G:0.10, T:0.18
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:77243041 original size:39 final size:38
Alignment explanation
Indices: 77242934--77243057 Score: 117
Period size: 39 Copynumber: 3.2 Consensus size: 38
77242924 TACTCGTTCA
*
77242934 AAATGCCTTCGGGAACATAGCCCGGTTATAGTAACTCGCAC
1 AAATGCCTTCGGG--CATAGCCCGGAT-TAGTAACTCGCAC
* * * * **
77242975 AATTGCCTTCGGACTTAACCAAGATTAGTAACTTCGCAC
1 AAATGCCTTCGGGCATAGCCCGGATTAGTAAC-TCGCAC
*
77243014 AAATGCCTTCGGGC-TAGCCCGGAATTAG-ATCTCGCAC
1 AAATGCCTTCGGGCATAGCCCGG-ATTAGTAACTCGCAC
77243051 AAATGCC
1 AAATGCC
77243058 GTTCCGGATC
Statistics
Matches: 68, Mismatches: 13, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
37 13 0.19
38 14 0.21
39 30 0.44
41 11 0.16
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.23
Consensus pattern (38 bp):
AAATGCCTTCGGGCATAGCCCGGATTAGTAACTCGCAC
Found at i:77245532 original size:1 final size:1
Alignment explanation
Indices: 77245528--77245652 Score: 178
Period size: 1 Copynumber: 125.0 Consensus size: 1
77245518 AAAATTAATT
* **
77245528 AAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
** ** *
77245593 AAAAAAAAAAAAAAAAAAAAAAATTAAAAAAAAAAAAAATTAGAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
77245653 CCAATTTAAA
Statistics
Matches: 113, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
1 113 1.00
ACGTcount: A:0.94, C:0.01, G:0.01, T:0.05
Consensus pattern (1 bp):
A
Found at i:77245534 original size:15 final size:13
Alignment explanation
Indices: 77245514--77245652 Score: 142
Period size: 13 Copynumber: 10.5 Consensus size: 13
77245504 AACCAATGCT
*
77245514 AAAAAAAATTAATTA
1 AAAAAAAAATAA--A
77245529 AAAAAAAAATAAA
1 AAAAAAAAATAAA
77245542 AAAAAAAAA-AAA
1 AAAAAAAAATAAA
77245554 AAAAAAAAA-AAA
1 AAAAAAAAATAAA
*
77245566 AATCAAAAAAAAAAA
1 AA--AAAAAAATAAA
*
77245581 AAAAAAAAAAAAA
1 AAAAAAAAATAAA
*
77245594 AAAAAAAAAAAAA
1 AAAAAAAAATAAA
77245607 AAAAAAAAATTAAA
1 AAAAAAAAA-TAAA
*
77245621 AAAAAAAAA-AATT
1 AAAAAAAAATAA-A
*
77245634 AGAAAAAAA-AAA
1 AAAAAAAAATAAA
77245646 AAAAAAA
1 AAAAAAA
77245653 CCAATTTAAA
Statistics
Matches: 113, Mismatches: 6, Indels: 13
0.86 0.05 0.10
Matches are distributed among these distances:
12 25 0.22
13 53 0.47
14 19 0.17
15 16 0.14
ACGTcount: A:0.91, C:0.01, G:0.01, T:0.07
Consensus pattern (13 bp):
AAAAAAAAATAAA
Found at i:77245535 original size:16 final size:16
Alignment explanation
Indices: 77245514--77245649 Score: 179
Period size: 17 Copynumber: 8.5 Consensus size: 16
77245504 AACCAATGCT
* **
77245514 AAAAAAAATTAATTAA
1 AAAAAAAATAAAAAAA
77245530 AAAAAAAAT-AAAAAA
1 AAAAAAAATAAAAAAA
77245545 AAAAAAAA-AAAAAAA
1 AAAAAAAATAAAAAAA
77245560 AAAAAAAATCAAAAAAA
1 AAAAAAAAT-AAAAAAA
77245577 AAAAAAAA-AAAAAAA
1 AAAAAAAATAAAAAAA
*
77245592 AAAAAAAAAAAAAAAA
1 AAAAAAAATAAAAAAA
77245608 AAAAAAAATTAAAAAAA
1 AAAAAAAA-TAAAAAAA
*
77245625 AAAAAAATTAGAAAAAA
1 AAAAAAAATA-AAAAAA
77245642 AAAAAAAA
1 AAAAAAAA
77245650 AAACCAATTT
Statistics
Matches: 109, Mismatches: 5, Indels: 11
0.87 0.04 0.09
Matches are distributed among these distances:
15 41 0.38
16 26 0.24
17 42 0.39
ACGTcount: A:0.91, C:0.01, G:0.01, T:0.07
Consensus pattern (16 bp):
AAAAAAAATAAAAAAA
Found at i:77245581 original size:46 final size:46
Alignment explanation
Indices: 77245514--77245652 Score: 206
Period size: 48 Copynumber: 3.0 Consensus size: 46
77245504 AACCAATGCT
**
77245514 AAAAAAAATTAATTAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAATTAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAA
* *
77245560 AAAAAAAATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAT--TAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAA
* *
77245608 AAAAAAAATTAAAAAAAAAAAAAATTAGAAAAAAAAAAAAAAAAA
1 AAAAAAAATTAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAA
77245653 CCAATTTAAA
Statistics
Matches: 83, Mismatches: 8, Indels: 4
0.87 0.08 0.04
Matches are distributed among these distances:
46 41 0.49
48 42 0.51
ACGTcount: A:0.91, C:0.01, G:0.01, T:0.07
Consensus pattern (46 bp):
AAAAAAAATTAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAA
Found at i:77245583 original size:47 final size:48
Alignment explanation
Indices: 77245528--77245652 Score: 207
Period size: 48 Copynumber: 2.6 Consensus size: 48
77245518 AAAATTAATT
77245528 AAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCAAAAAA
1 AAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCAAAAAA
* *
77245576 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAT-TAAAAA
1 AAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCAAAAAA
* *
77245623 AAAAAAAAATTAGAAAAAAAAAAAAAAAAA
1 AAAAAAAAAATAAAAAAAAAAAAAAAAAAA
77245653 CCAATTTAAA
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
47 32 0.44
48 40 0.56
ACGTcount: A:0.94, C:0.01, G:0.01, T:0.05
Consensus pattern (48 bp):
AAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCAAAAAA
Found at i:77245663 original size:42 final size:42
Alignment explanation
Indices: 77245514--77245652 Score: 183
Period size: 42 Copynumber: 3.3 Consensus size: 42
77245504 AACCAATGCT
** *
77245514 AAAAAAAATTAATTAAAAAAAAAATAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAA
*
77245556 AAAAAAAAAAAATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* *
77245598 AAAAAAAAAAAA--AAAAAATTAAAAAAAAAAAAAATTAGAAAAA
1 AAAAAAAAAAAATTAAAAAA--AAAAAAAAAAAAAA-AAAAAAAA
77245641 AAAAAAAAAAAA
1 AAAAAAAAAAAA
77245653 CCAATTTAAA
Statistics
Matches: 88, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
40 6 0.07
42 64 0.73
43 18 0.20
ACGTcount: A:0.91, C:0.01, G:0.01, T:0.07
Consensus pattern (42 bp):
AAAAAAAAAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Found at i:77256796 original size:79 final size:81
Alignment explanation
Indices: 77256695--77256879 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
77256685 GCTACTCGTT
* * *
77256695 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
77256758 AGATTTAGTAAC-TCGCA
64 AGATATAGTAACTTAGCA
* ** *
77256775 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCAG
* *
77256839 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
77256855 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
77256880 CATCATTCAA
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 53 0.59
80 34 0.38
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCAG
ATATAGTAACTTAGCA
Found at i:77256879 original size:40 final size:40
Alignment explanation
Indices: 77256676--77256879 Score: 220
Period size: 40 Copynumber: 5.1 Consensus size: 40
77256666 CGGAATTTAA
** *
77256676 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
77256716 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
77256756 CCAGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
77256795 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
77256835 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
77256875 CCGGA
1 CCGGA
77256880 CATCATTCAA
Statistics
Matches: 137, Mismatches: 20, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
38 2 0.01
39 32 0.23
40 91 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:77265654 original size:21 final size:21
Alignment explanation
Indices: 77265611--77265654 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
77265601 AGTTTGATTG
* *
77265611 AATTGAAATTGCTAAAATTAA
1 AATTAAAATTGCTAAAATAAA
77265632 AATTAAAATTG-TAAAGATAAA
1 AATTAAAATTGCTAAA-ATAAA
77265653 AA
1 AA
77265655 AAGTTGAGGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.59, C:0.02, G:0.09, T:0.30
Consensus pattern (21 bp):
AATTAAAATTGCTAAAATAAA
Found at i:77266374 original size:10 final size:10
Alignment explanation
Indices: 77266359--77266397 Score: 62
Period size: 10 Copynumber: 3.9 Consensus size: 10
77266349 TAAAATTCTA
77266359 AAAGATAAAT
1 AAAGATAAAT
77266369 AAAGATAAAT
1 AAAGATAAAT
77266379 -AAGAATAAAT
1 AAAG-ATAAAT
77266389 AAAGATAAA
1 AAAGATAAA
77266398 AGCTAAAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
9 3 0.11
10 21 0.78
11 3 0.11
ACGTcount: A:0.72, C:0.00, G:0.10, T:0.18
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:77268940 original size:46 final size:48
Alignment explanation
Indices: 77268756--77269070 Score: 234
Period size: 46 Copynumber: 6.7 Consensus size: 48
77268746 GTAAGGTGCT
* *
77268756 GATGCCATGT-CCAGACATGGCCTTACACTGGC-TATCATCTTCG-AGGCC
1 GATGCCATGTCCCAGACAT-GTCTTACACTAGCTTA-CATC-TCGTAGGCC
* *
77268804 GATGCCATGTCCCGGACATGGTCTTACACTAGCTCTCACATAATCGT--GCC
1 GATGCCATGTCCCAGACAT-GTCTTACACTAGCT-T-ACAT-CTCGTAGGCC
*
77268854 GATGCCATGTCCTAGACATGATCTTACACT-GAC--ACATCTCGTA-GCC
1 GATGCCATGTCCCAGACATG-TCTTACACTAG-CTTACATCTCGTAGGCC
* *
77268900 GATG-CATGTCCCAGACATGTCTTACACTGGCTTACGTCTCG-AGGCC
1 GATGCCATGTCCCAGACATGTCTTACACTAGCTTACATCTCGTAGGCC
* * * * * *
77268946 GAT-ACATGTCCCAAACATGTCTTACACTAGCACT-CGTCTC-CATGCC
1 GATGCCATGTCCCAGACATGTCTTACACTAGC-TTACATCTCGTAGGCC
* * * *
77268992 GATGCCACGTCCCATACATGGTCTTACACTAGCTCT-CATATTGT-GGCC
1 GATGCCATGTCCCAGACAT-GTCTTACACTAGCT-TACATCTCGTAGGCC
*
77269040 AATG-CATGT-CCAGACATGTCTTACACTAGCT
1 GATGCCATGTCCCAGACATGTCTTACACTAGCT
77269071 CAGACAAGTG
Statistics
Matches: 222, Mismatches: 25, Indels: 43
0.77 0.09 0.15
Matches are distributed among these distances:
44 10 0.05
45 34 0.15
46 69 0.31
47 17 0.08
48 33 0.15
49 21 0.09
50 30 0.14
51 7 0.03
52 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGTCTTACACTAGCTTACATCTCGTAGGCC
Found at i:77269016 original size:94 final size:91
Alignment explanation
Indices: 77268801--77269069 Score: 215
Period size: 94 Copynumber: 2.9 Consensus size: 91
77268791 CATCTTCGAG
* * * * *
77268801 GCCGATGCCATGTCCCGGACATGGTCTTACACTAGCTCTCACATAATCG-TGCCGATGCCATGTC
1 GCCGATG-CACGTCCCAGACAT-GTCTTACACTAGCTCT--CAT-ATCGAGGCCAAT-ACATGTC
* * * *
77268865 CTAGACATGATCTTACACT-G-ACACATCT-CGT
60 C-AAACATG-TCTTACACTAGCACTCGTCTCCAT
* * * * *
77268896 AGCCGATGCATGTCCCAGACATGTCTTACACTGGCT-TACGTCTCGAGGCCGATACATGTCCCAA
1 -GCCGATGCACGTCCCAGACATGTCTTACACTAGCTCT-CATATCGAGGCCAATACATGT-CCAA
77268960 ACATGTCTTACACTAGCACTCGTCTCCAT
63 ACATGTCTTACACTAGCACTCGTCTCCAT
* * * * *
77268989 GCCGATGCCACGTCCCATACATGGTCTTACACTAGCTCTCATATTGTGGCCAATGCATGTCCAGA
1 GCCGATG-CACGTCCCAGACAT-GTCTTACACTAGCTCTCATATCGAGGCCAATACATGTCCAAA
77269054 CATGTCTTACACTAGC
64 CATGTCTTACACTAGC
77269070 TCAGACAAGT
Statistics
Matches: 145, Mismatches: 20, Indels: 19
0.79 0.11 0.10
Matches are distributed among these distances:
90 9 0.06
91 15 0.10
92 24 0.17
93 35 0.24
94 41 0.28
95 14 0.10
96 7 0.05
ACGTcount: A:0.23, C:0.32, G:0.19, T:0.26
Consensus pattern (91 bp):
GCCGATGCACGTCCCAGACATGTCTTACACTAGCTCTCATATCGAGGCCAATACATGTCCAAACA
TGTCTTACACTAGCACTCGTCTCCAT
Found at i:77275412 original size:6 final size:6
Alignment explanation
Indices: 77275382--77275573 Score: 135
Period size: 6 Copynumber: 31.3 Consensus size: 6
77275372 AAGAAACATT
* *
77275382 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAGA ATCAG-
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * * * *
77275429 GTGACAGA ATCAAA ATCAAA ATCAGA ATCAG- ATTAGGTA A-CAAA ATCAGA
1 AT--CAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
* * *
77275479 ATCAGT ATCAGGTA A-CAGA ATCAGA ATCAGA ACCAGA ATCAGA ATTAGGTA
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A
* * *
77275530 A-CAGA ATCAGA ATCAGT ATCAGGT ATCAGA ATTAGA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA ATCA-GA ATCAGA ATCAGA ATCAGA AT
77275574 GTGAATGCAA
Statistics
Matches: 148, Mismatches: 22, Indels: 32
0.73 0.11 0.16
Matches are distributed among these distances:
5 11 0.07
6 116 0.78
7 16 0.11
8 5 0.03
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:77275500 original size:25 final size:24
Alignment explanation
Indices: 77275445--77275509 Score: 103
Period size: 25 Copynumber: 2.7 Consensus size: 24
77275435 GAATCAAAAT
*
77275445 CAAAATCAGAATCAGATTAGGTAA
1 CAAAATCAGAATCAGATCAGGTAA
77275469 CAAAATCAGAATCAGTATCAGGTAA
1 CAAAATCAGAATCAG-ATCAGGTAA
*
77275494 CAGAATCAGAATCAGA
1 CAAAATCAGAATCAGA
77275510 ACCAGAATCA
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
24 16 0.42
25 22 0.58
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.18
Consensus pattern (24 bp):
CAAAATCAGAATCAGATCAGGTAA
Found at i:77275518 original size:37 final size:37
Alignment explanation
Indices: 77275475--77275545 Score: 124
Period size: 37 Copynumber: 1.9 Consensus size: 37
77275465 GTAACAAAAT
*
77275475 CAGAATCAGTATCAGGTAACAGAATCAGAATCAGAAC
1 CAGAATCAGAATCAGGTAACAGAATCAGAATCAGAAC
*
77275512 CAGAATCAGAATTAGGTAACAGAATCAGAATCAG
1 CAGAATCAGAATCAGGTAACAGAATCAGAATCAG
77275546 TATCAGGTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.46, C:0.17, G:0.20, T:0.17
Consensus pattern (37 bp):
CAGAATCAGAATCAGGTAACAGAATCAGAATCAGAAC
Found at i:77275535 original size:31 final size:31
Alignment explanation
Indices: 77275403--77275573 Score: 154
Period size: 31 Copynumber: 5.5 Consensus size: 31
77275393 AATCAAAATG
*
77275403 AGAATCAGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
* * * *
77275434 AGAATCAAAATCAAAATCAGAATCAGATTA-
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
* * *
77275464 GGTAA-CAAAATCAGAATCAGTATCAGGTAAC
1 AG-AATCAGAATCAGAATCAGAATCAGGTAAC
* *
77275495 AGAATCAGAATCAGAACCAGAATCA-G-AATT
1 AGAATCAGAATCAGAATCAGAATCAGGTAA-C
* *
77275525 AGGTAA-CAGAATCAGAATCAGTATCAGGTATC
1 A-G-AATCAGAATCAGAATCAGAATCAGGTAAC
*
77275557 AGAATTAGAATCAGAAT
1 AGAATCAGAATCAGAAT
77275574 GTGAATGCAA
Statistics
Matches: 112, Mismatches: 19, Indels: 18
0.75 0.13 0.12
Matches are distributed among these distances:
29 2 0.02
30 28 0.25
31 77 0.69
32 4 0.04
33 1 0.01
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:77275540 original size:25 final size:25
Alignment explanation
Indices: 77275408--77275573 Score: 86
Period size: 25 Copynumber: 6.7 Consensus size: 25
77275398 AAATGAGAAT
*
77275408 CAGAATCAGAATCAGAATCAGGTGA
1 CAGAATCAGAATCAGAATCAGGTAA
* *
77275433 CAGAATCAAAATCAAAATCA-G-AA
1 CAGAATCAGAATCAGAATCAGGTAA
* *
77275456 TCAGATTAGGTAACAAAATCAGAATCA-GTAT
1 -CAGA--A--T--CAGAATCAGAATCAGGTAA
77275487 CAGGTAA-CAGAATCAGAATCA-G-AA
1 CA-G-AATCAGAATCAGAATCAGGTAA
77275511 CCAGAATCAGAAT-----T-AGGTAA
1 -CAGAATCAGAATCAGAATCAGGTAA
* *
77275531 CAGAATCAGAATCAGTATCAGGTAT
1 CAGAATCAGAATCAGAATCAGGTAA
*
77275556 CAGAATTAGAATCAGAAT
1 CAGAATCAGAATCAGAAT
77275574 GTGAATGCAA
Statistics
Matches: 111, Mismatches: 10, Indels: 40
0.69 0.06 0.25
Matches are distributed among these distances:
18 1 0.01
19 14 0.13
20 2 0.02
23 3 0.03
24 14 0.13
25 55 0.50
26 1 0.01
28 1 0.01
30 17 0.15
31 2 0.02
32 1 0.01
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAGGTAA
Found at i:77275740 original size:27 final size:26
Alignment explanation
Indices: 77275692--77275751 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
77275682 GCGAGGCTGC
*
77275692 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
77275719 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
77275745 CAAATAT
1 CAGATAT
77275752 AGATATATGT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:77275840 original size:27 final size:26
Alignment explanation
Indices: 77275792--77275843 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
77275782 GCGAGGCTAC
*
77275792 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
77275818 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
77275844 TTGAAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:77276146 original size:27 final size:27
Alignment explanation
Indices: 77276080--77276319 Score: 250
Period size: 27 Copynumber: 8.9 Consensus size: 27
77276070 AACACATACC
* * *
77276080 ATTT-TACCCCACAAGGGTATCTCGGT
1 ATTTCTACCCTACAGGGGTATTTCGGT
* * * *
77276106 AATTT-TATCTTACAGGAGTATTTCAGT
1 -ATTTCTACCCTACAGGGGTATTTCGGT
* * *
77276133 AATTCTACCCTACAGGGGCATTTAGGT
1 ATTTCTACCCTACAGGGGTATTTCGGT
*
77276160 ATTTCTACCCTACAAGGGTATTTCGGT
1 ATTTCTACCCTACAGGGGTATTTCGGT
* **
77276187 AATTCTACCCTACAGGGGTATTTTAGT
1 ATTTCTACCCTACAGGGGTATTTCGGT
* *
77276214 AATTCTACCCTATAGGGGTATTTCGGT
1 ATTTCTACCCTACAGGGGTATTTCGGT
* * *
77276241 ATTTTTACCCTATAGGGGTATTCCGGT
1 ATTTCTACCCTACAGGGGTATTTCGGT
* * *
77276268 ATTTCTACCCTACAAGGTTATTTCGGC
1 ATTTCTACCCTACAGGGGTATTTCGGT
*
77276295 ATTTCTACCCTACAAGGGTATTTCG
1 ATTTCTACCCTACAGGGGTATTTCG
77276320 ATAATTTTGT
Statistics
Matches: 177, Mismatches: 35, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
26 3 0.02
27 174 0.98
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.37
Consensus pattern (27 bp):
ATTTCTACCCTACAGGGGTATTTCGGT
Found at i:77276219 original size:81 final size:80
Alignment explanation
Indices: 77276080--77276317 Score: 278
Period size: 81 Copynumber: 3.0 Consensus size: 80
77276070 AACACATACC
* * * * * *
77276080 ATTTTACCCCACAAGGGTATCTCGGTAATTTTATCTTACAGGAGTATTTCAGTAATTCTACCCTA
1 ATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTA
*
77276145 CAGGGGCATTTAGGT
66 CAGGGGTATTTAGGT
*
77276160 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCT
1 ATTT-TACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCT
* *
77276225 ATAGGGGTATTTCGGT
65 ACAGGGGTATTTAGGT
* * * * * * * * *
77276241 ATTTTTACCCTATAGGGGTATTCCGGTATTTCTACCCTACAAGGTTATTTCGGCATTTCTACCCT
1 A-TTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCT
*
77276306 ACAAGGGTATTT
65 ACAGGGGTATTT
77276318 CGATAATTTT
Statistics
Matches: 134, Mismatches: 22, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
80 4 0.03
81 127 0.95
82 3 0.02
ACGTcount: A:0.24, C:0.21, G:0.18, T:0.37
Consensus pattern (80 bp):
ATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTA
CAGGGGTATTTAGGT
Found at i:77276351 original size:27 final size:27
Alignment explanation
Indices: 77276321--77276476 Score: 195
Period size: 27 Copynumber: 5.8 Consensus size: 27
77276311 GGTATTTCGA
* *
77276321 TAATTTTGTAAATCGAGGGTAAAATAG
1 TAATTCTGTAAATCGAGGGTAAAACAG
* *
77276348 TAATTCTATAAATCAAGGGTAAAACAG
1 TAATTCTGTAAATCGAGGGTAAAACAG
* ** *
77276375 TAATTTTGTAAATTAAGGGTAAAACGG
1 TAATTCTGTAAATCGAGGGTAAAACAG
*
77276402 TAATTCTGTAAATTGAGGGTAAAACAG
1 TAATTCTGTAAATCGAGGGTAAAACAG
* *
77276429 TAATTCTGTAAATTGAGGGTAAAACGG
1 TAATTCTGTAAATCGAGGGTAAAACAG
* *
77276456 TAATTTTATAAATCGAGGGTA
1 TAATTCTGTAAATCGAGGGTA
77276477 CTTTGGTAAT
Statistics
Matches: 114, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 114 1.00
ACGTcount: A:0.41, C:0.06, G:0.21, T:0.31
Consensus pattern (27 bp):
TAATTCTGTAAATCGAGGGTAAAACAG
Found at i:77276393 original size:81 final size:81
Alignment explanation
Indices: 77276307--77276503 Score: 225
Period size: 81 Copynumber: 2.4 Consensus size: 81
77276297 TTCTACCCTA
* *
77276307 CAAGGGTATTTCGATAATTTTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCAAGGGTAAAA
1 CAAGGGTATTTCGGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAA
*
77276372 CAGTAATTTTGTAAAT
66 CAGTAATTTTATAAAT
* *** * * * **
77276388 TAAGGGTAAAACGGTAATTCTGTAAATTGAGGGTAAAACAGTAATTCTGTAAATTGAGGGTAAAA
1 CAAGGGTATTTCGGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAA
*
77276453 CGGTAATTTTATAAAT
66 CAGTAATTTTATAAAT
* ** *
77276469 CGAGGGTACTTT-GGTAATTTTACAAGTCGAGGGTA
1 CAAGGGTA-TTTCGGTAATTTTGTAAATCGAGGGTA
77276504 TTTCAATAAT
Statistics
Matches: 92, Mismatches: 23, Indels: 2
0.79 0.20 0.02
Matches are distributed among these distances:
81 92 1.00
ACGTcount: A:0.38, C:0.08, G:0.22, T:0.32
Consensus pattern (81 bp):
CAAGGGTATTTCGGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAA
CAGTAATTTTATAAAT
Found at i:77276484 original size:27 final size:27
Alignment explanation
Indices: 77276454--77276649 Score: 182
Period size: 27 Copynumber: 7.3 Consensus size: 27
77276444 AGGGTAAAAC
* *
77276454 GGTAATTTTATAAATCGAGGGTACTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
* *
77276481 GGTAATTTTACAAGTCGAGGGTATTTC
1 GGTAATTTTACAAATCGAGGGTATTTT
** ** * *
77276508 AATAATTTTACAGGTCGAGGGTAGTTC
1 GGTAATTTTACAAATCGAGGGTATTTT
* *
77276535 AGTAATTTCACAAATC-AGGGGTATTTT
1 GGTAATTTTACAAATCGA-GGGTATTTT
*
77276562 GGTAATTTTACAAA-CTAGAGGTATTTT
1 GGTAATTTTACAAATCGAG-GGTATTTT
* * *
77276589 GGTAATTTTATAAACCAAGGGTATTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
* *
77276616 AGTAATTTTACAAA-CCAGGGTATTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
*
77276642 GGTCATTT
1 GGTAATTT
77276650 CGTAAACTAA
Statistics
Matches: 142, Mismatches: 23, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
26 20 0.14
27 119 0.84
28 3 0.02
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.39
Consensus pattern (27 bp):
GGTAATTTTACAAATCGAGGGTATTTT
Found at i:77276487 original size:54 final size:54
Alignment explanation
Indices: 77276321--77276476 Score: 231
Period size: 54 Copynumber: 2.9 Consensus size: 54
77276311 GGTATTTCGA
* ** *
77276321 TAATTTTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCAAGGGTAAAACAG
1 TAATTTTGTAAATTGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAG
* * *
77276375 TAATTTTGTAAATTAAGGGTAAAACGGTAATTCTGTAAATTGAGGGTAAAACAG
1 TAATTTTGTAAATTGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAG
* *
77276429 TAATTCTGTAAATTGAGGGTAAAACGGTAATTTTATAAATCGAGGGTA
1 TAATTTTGTAAATTGAGGGTAAAACGGTAATTCTATAAATCGAGGGTA
77276477 CTTTGGTAAT
Statistics
Matches: 90, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 90 1.00
ACGTcount: A:0.41, C:0.06, G:0.21, T:0.31
Consensus pattern (54 bp):
TAATTTTGTAAATTGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAG
Found at i:77278622 original size:6 final size:6
Alignment explanation
Indices: 77278592--77278778 Score: 134
Period size: 6 Copynumber: 30.3 Consensus size: 6
77278582 AAGAAACATT
* * *
77278592 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * * *
77278641 ATCAAA ATCAAA ATCAGA ATCAGA ATTAGGTA A-CAGA ATCAGA ATCAGT
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA
* * *
77278690 ATCAGGTA A-CAGA ACCAGA ATCAGA ACCAGA ATCAGA ATTAGGTA A-CAGA
1 ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
*
77278740 ATCAGA ATCAGT ATCAAGTA A-CAGA ATCAGA ATCAGA AT
1 ATCAGA ATCAGA ATC-AG-A ATCAGA ATCAGA ATCAGA AT
77278779 ATGAATGCAA
Statistics
Matches: 145, Mismatches: 19, Indels: 34
0.73 0.10 0.17
Matches are distributed among these distances:
5 10 0.07
6 114 0.79
7 14 0.10
8 7 0.05
ACGTcount: A:0.49, C:0.16, G:0.18, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:77278680 original size:25 final size:25
Alignment explanation
Indices: 77278652--77278715 Score: 101
Period size: 25 Copynumber: 2.6 Consensus size: 25
77278642 TCAAAATCAA
*
77278652 AATCAGAATCAGAATTAGGTAACAG
1 AATCAGAATCAGAATCAGGTAACAG
*
77278677 AATCAGAATCAGTATCAGGTAACAG
1 AATCAGAATCAGAATCAGGTAACAG
*
77278702 AACCAGAATCAGAA
1 AATCAGAATCAGAA
77278716 CCAGAATCAG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.48, C:0.16, G:0.19, T:0.17
Consensus pattern (25 bp):
AATCAGAATCAGAATCAGGTAACAG
Found at i:77278694 original size:37 final size:37
Alignment explanation
Indices: 77278601--77278778 Score: 136
Period size: 37 Copynumber: 4.8 Consensus size: 37
77278591 TATCAGAACT
* *
77278601 AGAATCAAAATGAGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAAAATCAGAATCAGAATCAGAATCAGGTAAC
* *
77278638 AGAATCAAAATCAAAATCAGAATCAGAATTAGGTAAC
1 AGAATCAAAATCAGAATCAGAATCAGAATCAGGTAAC
* * *
77278675 AGAATCAGAATCAGTATCAGGTAA-CAGAACCA-G-AATC
1 AGAATCAAAATCAGAATCA-G-AATCAGAATCAGGTAA-C
* * *
77278712 AGAACCAGAATCAGAATTAGGTAA-CAGAATCA-G-AATC
1 AGAATCAAAATCAGAATCA-G-AATCAGAATCAGGTAA-C
*
77278749 AGTATCAAGTAA-CAGAATCAGAATCAGAAT
1 AGAATCAA--AATCAGAATCAGAATCAGAAT
77278779 ATGAATGCAA
Statistics
Matches: 118, Mismatches: 17, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
36 4 0.03
37 96 0.81
38 14 0.12
39 4 0.03
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.17
Consensus pattern (37 bp):
AGAATCAAAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:77278740 original size:25 final size:25
Alignment explanation
Indices: 77278711--77278778 Score: 100
Period size: 25 Copynumber: 2.7 Consensus size: 25
77278701 GAACCAGAAT
* * *
77278711 CAGAACCAGAATCAGAATTAGGTAA
1 CAGAATCAGAATCAGAATCAAGTAA
*
77278736 CAGAATCAGAATCAGTATCAAGTAA
1 CAGAATCAGAATCAGAATCAAGTAA
77278761 CAGAATCAGAATCAGAAT
1 CAGAATCAGAATCAGAAT
77278779 ATGAATGCAA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.49, C:0.16, G:0.18, T:0.18
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAAGTAA
Found at i:77278775 original size:62 final size:62
Alignment explanation
Indices: 77278613--77278777 Score: 267
Period size: 62 Copynumber: 2.7 Consensus size: 62
77278603 AATCAAAATG
* * * * *
77278613 AGAATCAGAATCAGAATCAGGTGACAGAATCAAAATCAAAATCAGAATCAGAATTAGGTAAC
1 AGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAACCAGAATCAGAATTAGGTAAC
*
77278675 AGAATCAGAATCAGTATCAGGTAACAGAACCAGAATCAGAACCAGAATCAGAATTAGGTAAC
1 AGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAACCAGAATCAGAATTAGGTAAC
*
77278737 AGAATCAGAATCAGTATCAAGTAACAGAATCAGAATCAGAA
1 AGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAA
77278778 TATGAATGCA
Statistics
Matches: 95, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
62 95 1.00
ACGTcount: A:0.49, C:0.16, G:0.18, T:0.17
Consensus pattern (62 bp):
AGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAACCAGAATCAGAATTAGGTAAC
Found at i:77279395 original size:27 final size:27
Alignment explanation
Indices: 77279296--77279556 Score: 280
Period size: 27 Copynumber: 9.4 Consensus size: 27
77279286 TTTACCCCAT
* * *
77279296 AAGGGTATCTCAGTAATTCTACCTTA-
1 AAGGGTATTTCAGTATTTCTACCCTAC
* *
77279322 TAGGAGTATTTCAGTAATTCTACCCTAC
1 AAGG-GTATTTCAGTATTTCTACCCTAC
77279350 AA-GGTATTT-AGGTATTTCTACCCTAC
1 AAGGGTATTTCA-GTATTTCTACCCTAC
* *
77279376 AAGGGTATTTTAGTAATTCTACCCTAC
1 AAGGGTATTTCAGTATTTCTACCCTAC
77279403 -AGAGGTATTTCAGTATTTCTACCCTAC
1 AAG-GGTATTTCAGTATTTCTACCCTAC
77279430 -AGAGGTATTTCAGTATTTCTACCCTAC
1 AAG-GGTATTTCAGTATTTCTACCCTAC
*
77279457 AGGGGTATTTCGGTATTTCGGTATTTCTACCCTAC
1 AAGGGTATTTC---A-----GTATTTCTACCCTAC
*
77279492 AAGGGTATTTCGGTATTTCTACCCTAC
1 AAGGGTATTTCAGTATTTCTACCCTAC
* *
77279519 AAGGGTATTTCGGCATTTCTACCCTAC
1 AAGGGTATTTCAGTATTTCTACCCTAC
77279546 AAGGGTATTTC
1 AAGGGTATTTC
77279557 GGTAATTTTA
Statistics
Matches: 208, Mismatches: 12, Indels: 29
0.84 0.05 0.12
Matches are distributed among these distances:
25 1 0.00
26 27 0.13
27 151 0.73
28 3 0.01
30 1 0.00
35 25 0.12
ACGTcount: A:0.25, C:0.21, G:0.17, T:0.37
Consensus pattern (27 bp):
AAGGGTATTTCAGTATTTCTACCCTAC
Found at i:77279446 original size:35 final size:35
Alignment explanation
Indices: 77279433--77279510 Score: 138
Period size: 35 Copynumber: 2.2 Consensus size: 35
77279423 ACCCTACAGA
*
77279433 GGTATTTCAGTATTTCTACCCTACAGGGGTATTTC
1 GGTATTTCAGTATTTCTACCCTACAAGGGTATTTC
*
77279468 GGTATTTCGGTATTTCTACCCTACAAGGGTATTTC
1 GGTATTTCAGTATTTCTACCCTACAAGGGTATTTC
77279503 GGTATTTC
1 GGTATTTC
77279511 TACCCTACAA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 41 1.00
ACGTcount: A:0.19, C:0.19, G:0.21, T:0.41
Consensus pattern (35 bp):
GGTATTTCAGTATTTCTACCCTACAAGGGTATTTC
Found at i:77279475 original size:62 final size:62
Alignment explanation
Indices: 77279406--77279537 Score: 212
Period size: 62 Copynumber: 2.1 Consensus size: 62
77279396 ACCCTACAGA
*
77279406 GGTATTTCAGTATTTCTACCCTAC-AGAGGTATTTCAGTATTTCTACCCTACAGGGGTATTTC
1 GGTATTTCAGTATTTCTACCCTACAAG-GGTATTTCAGTATTTCTACCCTACAAGGGTATTTC
* *
77279468 GGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTC
1 GGTATTTCAGTATTTCTACCCTACAAGGGTATTTCAGTATTTCTACCCTACAAGGGTATTTC
*
77279530 GGCATTTC
1 GGTATTTC
77279538 TACCCTACAA
Statistics
Matches: 65, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
62 63 0.97
63 2 0.03
ACGTcount: A:0.21, C:0.21, G:0.19, T:0.39
Consensus pattern (62 bp):
GGTATTTCAGTATTTCTACCCTACAAGGGTATTTCAGTATTTCTACCCTACAAGGGTATTTC
Found at i:77279492 original size:89 final size:89
Alignment explanation
Indices: 77279392--77279560 Score: 270
Period size: 89 Copynumber: 1.9 Consensus size: 89
77279382 ATTTTAGTAA
*
77279392 TTCTACCCTAC-AGAGGTATTTCAGTATTTCTACCCTAC-AGAGGTATTTCAGTATTTCTACCCT
1 TTCTACCCTACAAG-GGTATTTCAGTATTTCTACCCTACAAG-GGTATTTCAGCATTTCTACCCT
*
77279455 ACAGGGGTATTTCGGTATTTCGGTAT
64 ACAAGGGTATTTCGGTATTTCGGTAT
* *
77279481 TTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGCATTTCTACCCTAC
1 TTCTACCCTACAAGGGTATTTCAGTATTTCTACCCTACAAGGGTATTTCAGCATTTCTACCCTAC
77279546 AAGGGTATTTCGGTA
66 AAGGGTATTTCGGTA
77279561 ATTTTATAAA
Statistics
Matches: 74, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
89 70 0.95
90 4 0.05
ACGTcount: A:0.22, C:0.22, G:0.18, T:0.37
Consensus pattern (89 bp):
TTCTACCCTACAAGGGTATTTCAGTATTTCTACCCTACAAGGGTATTTCAGCATTTCTACCCTAC
AAGGGTATTTCGGTATTTCGGTAT
Found at i:77279577 original size:27 final size:27
Alignment explanation
Indices: 77279547--77279996 Score: 159
Period size: 27 Copynumber: 16.7 Consensus size: 27
77279537 CTACCCTACA
77279547 AGGGTATTTCGGTAATTTTATAAATCG
1 AGGGTATTTCGGTAATTTTATAAATCG
** * * *
77279574 AGGGTAAAAT-AGTAATTCTATAAATGG
1 AGGGT-ATTTCGGTAATTTTATAAATCG
** * *
77279601 AGGGTAAAAT-AGTAATTTTGTAAATCG
1 AGGGT-ATTTCGGTAATTTTATAAATCG
*** *
77279628 AGGGTAAAACGGTAATTCTATAAATCG
1 AGGGTATTTCGGTAATTTTATAAATCG
** * * *
77279655 AGGGTAAAAT-AGTAATTCTATAAATTG
1 AGGGT-ATTTCGGTAATTTTATAAATCG
* *** **
77279682 GGGGTAAAACGGTAATTCTT-TAAATTA
1 AGGGTATTTCGGTAATT-TTATAAATCG
*** * * *
77279709 AGGGTAAAACAGTAATTCTGTAAATCG
1 AGGGTATTTCGGTAATTTTATAAATCG
*** *
77279736 AGGGTAAAACGGTAATTCTATAAATCG
1 AGGGTATTTCGGTAATTTTATAAATCG
* *
77279763 AGGGTACTTT-GGTAATTTTACAAGTCG
1 AGGGTA-TTTCGGTAATTTTATAAATCG
** * *
77279790 AGGGTATTTCAATAATTTTACAAGGTC-
1 AGGGTATTTCGGTAATTTTATAA-ATCG
* * *
77279817 AGGGTATTTCAGTAATTTCACAAATC-
1 AGGGTATTTCGGTAATTTTATAAATCG
* * *
77279843 AGGGGTATTTTGGTAATTTTACAAA-CT
1 A-GGGTATTTCGGTAATTTTATAAATCG
* * * *
77279870 AGGGGTATTTTGATAATTTTACAAA-CC
1 A-GGGTATTTCGGTAATTTTATAAATCG
* * *
77279897 AGGGGTATTTTGGTAATTTTACAAA-CTA
1 A-GGGTATTTCGGTAATTTTATAAATC-G
* * *
77279925 AAGGTATTTTC-GTAATTTTATAAACCA
1 AGGGTA-TTTCGGTAATTTTATAAATCG
** * *
77279952 AGGGTATTTTAGTAATTTTACAAA-CC
1 AGGGTATTTCGGTAATTTTATAAATCG
*
77279978 AGGGGTATTTTGGTAATTT
1 A-GGGTATTTCGGTAATTT
77279997 GGTAAACTAA
Statistics
Matches: 354, Mismatches: 53, Indels: 32
0.81 0.12 0.07
Matches are distributed among these distances:
26 19 0.05
27 321 0.91
28 14 0.04
ACGTcount: A:0.36, C:0.09, G:0.21, T:0.35
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTTATAAATCG
Found at i:77279605 original size:54 final size:53
Alignment explanation
Indices: 77279558--77279795 Score: 278
Period size: 54 Copynumber: 4.4 Consensus size: 53
77279548 GGGTATTTCG
** *
77279558 GTAATTTTATAAATCGAGGGTAAAATAGTAATTCTATAAATGGAGGGTAAAATA
1 GTAATTTTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGT-AAATA
*
77279612 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATA
1 GTAATTTTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGT-AAATA
* * * * ** *
77279666 GTAATTCTATAAATTGGGGGTAAAACGGTAATTCTTTAAATTAAGGGTAAAACA
1 GTAATTTTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGT-AAATA
* * ** *
77279720 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTACTTTG
1 GTAATTTTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTA-AATA
* *
77279774 GTAATTTTACAAGTCGAGGGTA
1 GTAATTTTATAAATCGAGGGTA
77279796 TTTCAATAAT
Statistics
Matches: 157, Mismatches: 26, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
53 1 0.01
54 156 0.99
ACGTcount: A:0.39, C:0.08, G:0.22, T:0.31
Consensus pattern (53 bp):
GTAATTTTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAATA
Found at i:77279632 original size:81 final size:80
Alignment explanation
Indices: 77279558--77279795 Score: 300
Period size: 81 Copynumber: 2.9 Consensus size: 80
77279548 GGGTATTTCG
* *
77279558 GTAATTTTATAAATCGAGGGTAAAATAGTAATTCTATAAATGGAGGGTAAAATAGTAATTTTGTA
1 GTAATTCTATAAATCGAGGGTAAAATAGTAATTCTATAAATGGAGGGTAAAATGGTAATTTT-TA
*
77279623 AATCGAGGGTAAAACG
65 AATCGAGGGTAAAACA
*
77279639 GTAATTCTATAAATCGAGGGTAAAATAGTAATTCTATAAATTGG-GGGTAAAACGGTAATTCTTT
1 GTAATTCTATAAATCGAGGGTAAAATAGTAATTCTATAAA-TGGAGGGTAAAATGGTAATT-TTT
**
77279703 AAATTAAGGGTAAAACA
64 AAATCGAGGGTAAAACA
* ** * ***
77279720 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTACTTTGGTAA-TTTTAC
1 GTAATTCTATAAATCGAGGGTAAAATAGTAATTCTATAAATGGAGGGTAAAATGGTAATTTTTA-
77279784 AAGTCGAGGGTA
65 AA-TCGAGGGTA
77279796 TTTCAATAAT
Statistics
Matches: 136, Mismatches: 16, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
79 4 0.03
80 5 0.04
81 122 0.90
82 5 0.04
ACGTcount: A:0.39, C:0.08, G:0.22, T:0.31
Consensus pattern (80 bp):
GTAATTCTATAAATCGAGGGTAAAATAGTAATTCTATAAATGGAGGGTAAAATGGTAATTTTTAA
ATCGAGGGTAAAACA
Found at i:77279821 original size:81 final size:81
Alignment explanation
Indices: 77279736--77279893 Score: 178
Period size: 81 Copynumber: 2.0 Consensus size: 81
77279726 CTGTAAATCG
* * *
77279736 AGGGTAAAACGGTAA-TTCTATAAATC-GAGGGTACTTTGGTAATTTTACAAGTCGA-GGGTATT
1 AGGGTAAAACAGTAATTTC-ACAAATCAG-GGGTACTTTGGTAATTTTACAA-ACGAGGGGTATT
77279798 TCAATAATTTTACAAGGTC
63 TCAATAATTTTACAAGGTC
*** * * **
77279817 AGGGTATTTCAGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTG
1 AGGGTAAAACAGTAATTTCACAAATCAGGGGTACTTTGGTAATTTTACAAACGAGGGGTATTTCA
77279882 ATAATTTTACAA
66 ATAATTTTACAA
77279894 ACCAGGGGTA
Statistics
Matches: 64, Mismatches: 10, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
80 2 0.03
81 58 0.91
82 4 0.06
ACGTcount: A:0.33, C:0.10, G:0.21, T:0.36
Consensus pattern (81 bp):
AGGGTAAAACAGTAATTTCACAAATCAGGGGTACTTTGGTAATTTTACAAACGAGGGGTATTTCA
ATAATTTTACAAGGTC
Found at i:77280003 original size:27 final size:27
Alignment explanation
Indices: 77279764--77279996 Score: 245
Period size: 27 Copynumber: 8.6 Consensus size: 27
77279754 TATAAATCGA
* **
77279764 GGGTACTTTGGTAATTTTACAAGTC-G
1 GGGTATTTTGGTAATTTTACAAACCAG
*** **
77279790 AGGGTATTTCAATAATTTTACAAGGTCA-
1 -GGGTATTTTGGTAATTTTACAA-ACCAG
** * *
77279818 GGGTATTTCAGTAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
77279845 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
77279872 GGGTATTTTGATAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
77279899 GGGTATTTTGGTAATTTTACAAACTAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* * * *
77279926 AGGTATTTTCGTAATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
77279953 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
77279980 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
77279997 GGTAAACTAA
Statistics
Matches: 177, Mismatches: 26, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
26 3 0.02
27 171 0.97
28 3 0.02
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:77299895 original size:40 final size:40
Alignment explanation
Indices: 77299851--77299931 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
77299841 CACATACCTG
77299851 TCAATTTAACTTATAAATCATACATAATATAGAATAAACA
1 TCAATTTAACTTATAAATCATACATAATATAGAATAAACA
77299891 TCAATTTAACTTATAAATCATACATAATATAGAATAAACA
1 TCAATTTAACTTATAAATCATACATAATATAGAATAAACA
77299931 T
1 T
77299932 TCATTTTTCT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.52, C:0.12, G:0.02, T:0.33
Consensus pattern (40 bp):
TCAATTTAACTTATAAATCATACATAATATAGAATAAACA
Found at i:77300275 original size:19 final size:19
Alignment explanation
Indices: 77300251--77300288 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
77300241 CCAATACATG
77300251 GTACCTAATAAATTTAACA
1 GTACCTAATAAATTTAACA
*
77300270 GTACCTGATAAATTTAACA
1 GTACCTAATAAATTTAACA
77300289 CTGTCACGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.45, C:0.16, G:0.08, T:0.32
Consensus pattern (19 bp):
GTACCTAATAAATTTAACA
Found at i:77301680 original size:17 final size:17
Alignment explanation
Indices: 77301641--77301681 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
77301631 CATGTTCATG
77301641 GGAAAG-TAATTTCCAA
1 GGAAAGTTAATTTCCAA
77301657 GGAAAAGTTAGATTT-CAA
1 GG-AAAGTTA-ATTTCCAA
77301675 GGAAAGT
1 GGAAAGT
77301682 AAATAAAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 2 0.09
17 9 0.41
18 7 0.32
19 4 0.18
ACGTcount: A:0.44, C:0.07, G:0.24, T:0.24
Consensus pattern (17 bp):
GGAAAGTTAATTTCCAA
Found at i:77303146 original size:59 final size:58
Alignment explanation
Indices: 77302987--77303146 Score: 196
Period size: 59 Copynumber: 2.7 Consensus size: 58
77302977 ATTTGAAATT
* ** *
77302987 TTTTTCCTAATTTAGTACCTAGACTTTTTTTTGTCTAATTTAGTACTTGAACTTAACAC
1 TTTTTCCTAATTTAGTACCTAAACTTTTTTAGGTC-AATTTGGTACTTGAACTTAACAC
* * * *
77303046 TTTTTCCTAATTT-GATACTTAAACTTTTTTGGGCTCAATTTGGTACTTGAACTTGACAG
1 TTTTTCCTAATTTAG-TACCTAAACTTTTTTAGG-TCAATTTGGTACTTGAACTTAACAC
*
77303105 TTTTTCTTAATTTAGTACCTAAACTTTTTTAGGTTCAATTTG
1 TTTTTCCTAATTTAGTACCTAAACTTTTTTAGG-TCAATTTG
77303147 ATACCTAAAT
Statistics
Matches: 87, Mismatches: 11, Indels: 6
0.84 0.11 0.06
Matches are distributed among these distances:
58 1 0.01
59 83 0.95
60 3 0.03
ACGTcount: A:0.24, C:0.15, G:0.11, T:0.49
Consensus pattern (58 bp):
TTTTTCCTAATTTAGTACCTAAACTTTTTTAGGTCAATTTGGTACTTGAACTTAACAC
Found at i:77303375 original size:24 final size:23
Alignment explanation
Indices: 77303330--77303384 Score: 58
Period size: 24 Copynumber: 2.3 Consensus size: 23
77303320 TCAAAACCCC
* *
77303330 AAATTAAAAGAAATTCATTATTTT
1 AAATTAAAAGAAATTAAATA-TTT
*
77303354 TAATTAAAA-ATAATTAAATATTT
1 AAATTAAAAGA-AATTAAATATTT
77303377 AAATTAAA
1 AAATTAAA
77303385 CTAAAATTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
23 11 0.42
24 15 0.58
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (23 bp):
AAATTAAAAGAAATTAAATATTT
Found at i:77303407 original size:28 final size:28
Alignment explanation
Indices: 77303358--77303420 Score: 65
Period size: 28 Copynumber: 2.3 Consensus size: 28
77303348 TATTTTTAAT
* * *
77303358 TAAAAATAATTAAATATTTAAATTAAAC
1 TAAAAATAATTAAACATATAAAATAAAC
* *
77303386 TAAAATTAATTGAACATATAAAATAAA-
1 TAAAAATAATTAAACATATAAAATAAAC
*
77303413 AAAAAATA
1 TAAAAATA
77303421 CCATATCATT
Statistics
Matches: 28, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
27 6 0.21
28 22 0.79
ACGTcount: A:0.65, C:0.03, G:0.02, T:0.30
Consensus pattern (28 bp):
TAAAAATAATTAAACATATAAAATAAAC
Found at i:77303642 original size:32 final size:30
Alignment explanation
Indices: 77303604--77303684 Score: 108
Period size: 30 Copynumber: 2.6 Consensus size: 30
77303594 AATCCTCAAA
*
77303604 AAGTTTAAGTACCAACTTAAGAAAAAAGTGTC
1 AAGTTTAAGTACCAAATTAAG--AAAAGTGTC
*
77303636 AAGTTTAGGTACCAAATTAAGAAAAGTGTC
1 AAGTTTAAGTACCAAATTAAGAAAAGTGTC
* *
77303666 AAATTTGAGTACCAAATTA
1 AAGTTTAAGTACCAAATTA
77303685 GACCAAAAAA
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
30 25 0.57
32 19 0.43
ACGTcount: A:0.46, C:0.11, G:0.16, T:0.27
Consensus pattern (30 bp):
AAGTTTAAGTACCAAATTAAGAAAAGTGTC
Found at i:77304632 original size:13 final size:13
Alignment explanation
Indices: 77304614--77304644 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
77304604 CATTCACTAT
77304614 TTTTTCTCTCTTA
1 TTTTTCTCTCTTA
*
77304627 TTTTTCTCTTTTA
1 TTTTTCTCTCTTA
77304640 TTTTT
1 TTTTT
77304645 TACTTATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.06, C:0.16, G:0.00, T:0.77
Consensus pattern (13 bp):
TTTTTCTCTCTTA
Found at i:77311138 original size:22 final size:21
Alignment explanation
Indices: 77311078--77311139 Score: 54
Period size: 25 Copynumber: 2.7 Consensus size: 21
77311068 AAATTTATAT
*
77311078 ATTATTTAAAAAATAAGAAAA
1 ATTATTTAAAAATTAAGAAAA
77311099 ATTATTATAAAAATAATTAA-AAATA
1 ATTATT-T--AAA-AATTAAGAAA-A
77311124 CATTATTTAAAAATTA
1 -ATTATTTAAAAATTA
77311140 GTTTAAAATT
Statistics
Matches: 34, Mismatches: 1, Indels: 11
0.74 0.02 0.24
Matches are distributed among these distances:
21 6 0.18
22 6 0.18
23 3 0.09
24 6 0.18
25 7 0.21
26 6 0.18
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (21 bp):
ATTATTTAAAAATTAAGAAAA
Found at i:77322441 original size:26 final size:26
Alignment explanation
Indices: 77322302--77322444 Score: 86
Period size: 26 Copynumber: 5.7 Consensus size: 26
77322292 CCCGAATATA
* *
77322302 GGCTCTTTGTGAGCTTCC-AATTAGTT
1 GGCTCTTTGTGAGCTTCCTGATTA-AT
**
77322328 GGCTCTTTGTGAGCTTTTTGA-T-AT
1 GGCTCTTTGTGAGCTTCCTGATTAAT
** * *
77322352 GATTCTTTGTGAACTTCTTGATT-AT
1 GGCTCTTTGTGAGCTTCCTGATTAAT
*
77322377 GGCTC-TTATGAGCTTCCT-ATTATAT
1 GGCTCTTTGTGAGCTTCCTGATTA-AT
* ** *
77322402 AGC-C-CAGATAAGCTTCCTGATTAAT
1 GGCTCTTTG-TGAGCTTCCTGATTAAT
77322427 GGCTCTTTGTGAGCTTCC
1 GGCTCTTTGTGAGCTTCC
77322445 CAGTTATGTG
Statistics
Matches: 87, Mismatches: 22, Indels: 16
0.70 0.18 0.13
Matches are distributed among these distances:
23 3 0.03
24 29 0.33
25 23 0.26
26 30 0.34
27 2 0.02
ACGTcount: A:0.18, C:0.19, G:0.20, T:0.43
Consensus pattern (26 bp):
GGCTCTTTGTGAGCTTCCTGATTAAT
Found at i:77327816 original size:34 final size:34
Alignment explanation
Indices: 77327773--77327842 Score: 131
Period size: 34 Copynumber: 2.1 Consensus size: 34
77327763 TTGACAAAGT
77327773 CTGCACACTTTATTCCAGTACATATGGATTTCTC
1 CTGCACACTTTATTCCAGTACATATGGATTTCTC
*
77327807 CTGCACACTTTATTCCAGTACGTATGGATTTCTC
1 CTGCACACTTTATTCCAGTACATATGGATTTCTC
77327841 CT
1 CT
77327843 TGGATAGATT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.21, C:0.27, G:0.13, T:0.39
Consensus pattern (34 bp):
CTGCACACTTTATTCCAGTACATATGGATTTCTC
Found at i:77330340 original size:24 final size:24
Alignment explanation
Indices: 77330291--77330350 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 24
77330281 AGCTCCCATT
** *
77330291 ATATGGCTCTTTGTGAGTTTCTTG
1 ATATGGCTCTTTGTGAACTTCCTG
*
77330315 ATATGGTTCTTTGTGAACTTCCTG
1 ATATGGCTCTTTGTGAACTTCCTG
*
77330339 ATTGTGGCTCTT
1 A-TATGGCTCTT
77330351 ATGAGCTTCT
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
24 21 0.72
25 8 0.28
ACGTcount: A:0.13, C:0.15, G:0.23, T:0.48
Consensus pattern (24 bp):
ATATGGCTCTTTGTGAACTTCCTG
Found at i:77336147 original size:19 final size:20
Alignment explanation
Indices: 77336104--77336150 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 20
77336094 AAAACTAATG
77336104 ATTTT-TAAAAAATGATATA
1 ATTTTCTAAAAAATGATATA
*
77336123 ACTTTCTAAAAAATG-TGAT-
1 ATTTTCTAAAAAATGAT-ATA
77336142 ATTTTCTAA
1 ATTTTCTAA
77336151 CATTTGAATG
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
19 13 0.54
20 11 0.46
ACGTcount: A:0.45, C:0.06, G:0.06, T:0.43
Consensus pattern (20 bp):
ATTTTCTAAAAAATGATATA
Found at i:77339815 original size:20 final size:20
Alignment explanation
Indices: 77339764--77339815 Score: 52
Period size: 20 Copynumber: 2.5 Consensus size: 20
77339754 TTCAACTATG
* *
77339764 ATTAAACTTAACCGCTTTAAT
1 ATTAAA-TTAATCACTTTAAT
*
77339785 ATTAAGA-TAATCACTTTGAT
1 ATTAA-ATTAATCACTTTAAT
77339805 ATTAAATTAAT
1 ATTAAATTAAT
77339816 AAAATGTTAT
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
19 1 0.04
20 19 0.73
21 5 0.19
22 1 0.04
ACGTcount: A:0.42, C:0.12, G:0.06, T:0.40
Consensus pattern (20 bp):
ATTAAATTAATCACTTTAAT
Found at i:77364057 original size:93 final size:93
Alignment explanation
Indices: 77363945--77364116 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
77363935 CGCCCATAAG
*
77363945 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
77364009 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
77364038 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
77364103 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
77364117 TCAATCATCC
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:77364111 original size:46 final size:46
Alignment explanation
Indices: 77363938--77364113 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
77363928 TGTAACCCGC
* *
77363938 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* *
77363984 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
77364034 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
77364077 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
77364114 TGCTCAATCA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 61 0.55
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:77371559 original size:93 final size:93
Alignment explanation
Indices: 77371447--77371618 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
77371437 CGCCCATAAG
*
77371447 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
77371511 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
77371540 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
77371605 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
77371619 TCAACCATCC
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:77371613 original size:46 final size:46
Alignment explanation
Indices: 77371440--77371615 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
77371430 TGTAACCCGC
* *
77371440 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* *
77371486 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
77371536 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
77371579 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
77371616 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 61 0.55
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:77379265 original size:46 final size:45
Alignment explanation
Indices: 77379215--77379386 Score: 215
Period size: 46 Copynumber: 3.8 Consensus size: 45
77379205 TGGTTGAGCA
77379215 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * * *
77379261 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT-TATG-GA-T-GCGAAG
77379307 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
77379353 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
77379387 GGGGCGGGTT
Statistics
Matches: 108, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 96 0.89
47 2 0.02
48 3 0.03
49 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:77379369 original size:92 final size:92
Alignment explanation
Indices: 77379212--77379381 Score: 313
Period size: 92 Copynumber: 1.8 Consensus size: 92
77379202 GGATGGTTGA
* *
77379212 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
77379277 TGAGTCCGAGTTCGTGAATGTAACTAG
66 TGAGTCCGAGTTCGTGAATGTAACTAG
*
77379304 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
77379369 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
77379382 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
92 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAATGTAACTAG
Found at i:77384731 original size:33 final size:33
Alignment explanation
Indices: 77384689--77384756 Score: 127
Period size: 33 Copynumber: 2.1 Consensus size: 33
77384679 AGATGTTGCG
77384689 TATTGGAATTTCAAGATAGTTGGGAAAGGTACT
1 TATTGGAATTTCAAGATAGTTGGGAAAGGTACT
*
77384722 TATTGGAATTTCAAGATAGTTGGGAAATGTACT
1 TATTGGAATTTCAAGATAGTTGGGAAAGGTACT
77384755 TA
1 TA
77384757 CCATTGGTAG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.34, C:0.06, G:0.25, T:0.35
Consensus pattern (33 bp):
TATTGGAATTTCAAGATAGTTGGGAAAGGTACT
Found at i:77386775 original size:46 final size:46
Alignment explanation
Indices: 77386725--77386897 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
77386715 TGGTTGAGCA
77386725 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
77386771 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
77386816 CATCCGAACTGGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
77386864 CCCGAGCTCGTTGAGTTGAGTTCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
77386898 GGGGCGAGTT
Statistics
Matches: 104, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 59 0.57
47 28 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:77386881 original size:93 final size:93
Alignment explanation
Indices: 77386722--77386892 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
77386712 GGATGGTTGA
* *
77386722 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
77386787 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
77386815 GCATCCGAACTGGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
77386880 TGAGTTCGAGTTC
66 TGAGTCCGAGTTC
77386893 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:77392113 original size:43 final size:44
Alignment explanation
Indices: 77392066--77392177 Score: 133
Period size: 43 Copynumber: 2.6 Consensus size: 44
77392056 TGTTCTCGTA
** *
77392066 TAAGACCACT-TCTGGGATGTTGGCATCAATATGTGATTA-CGTG
1 TAAGACCACTGTCTGGGACATTGGCATCAATATGTGA-TAGCATG
*
77392109 TAAGACCA-TGTCTGGGACATTGGCATCGATATGTGATAGCATG
1 TAAGACCACTGTCTGGGACATTGGCATCAATATGTGATAGCATG
* *
77392152 TAAGACCAC-ATCTAGGACATTGGCAT
1 TAAGACCACTGTCTGGGACATTGGCAT
77392178 TATACAATAT
Statistics
Matches: 60, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
42 3 0.05
43 57 0.95
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.29
Consensus pattern (44 bp):
TAAGACCACTGTCTGGGACATTGGCATCAATATGTGATAGCATG
Found at i:77394642 original size:16 final size:16
Alignment explanation
Indices: 77394621--77394658 Score: 76
Period size: 16 Copynumber: 2.4 Consensus size: 16
77394611 GTGACGTATG
77394621 ACATCTTTTCAAAATA
1 ACATCTTTTCAAAATA
77394637 ACATCTTTTCAAAATA
1 ACATCTTTTCAAAATA
77394653 ACATCT
1 ACATCT
77394659 ACTTCTTCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.42, C:0.21, G:0.00, T:0.37
Consensus pattern (16 bp):
ACATCTTTTCAAAATA
Found at i:77396762 original size:44 final size:42
Alignment explanation
Indices: 77396712--77396866 Score: 154
Period size: 44 Copynumber: 3.6 Consensus size: 42
77396702 TATGTGTTTT
* *
77396712 CGTGTAAGACCATGTCTGGGACGTTGACATCGACCTATAATTTA
1 CGTGTAAGACCATGTCTGGGACGTTGACATCGA-AT-TGATTTA
* *
77396756 CGTGTAAGACCATGTCTGGGACATCGACATCGTAATTGATTT-
1 CGTGTAAGACCATGTCTGGGACGTTGACATCG-AATTGATTTA
* * *
77396798 CGTGTAAGACCCTGTCTGGGATAG-TGACATCAATATTTGA-TTA
1 CGTGTAAGACCATGTCTGGGA-CGTTGACATCGA-A-TTGATTTA
* *
77396841 CATGTAAGACCACGTCTGGGACGTTG
1 CGTGTAAGACCATGTCTGGGACGTTG
77396867 GCATTGTATG
Statistics
Matches: 92, Mismatches: 13, Indels: 13
0.78 0.11 0.11
Matches are distributed among these distances:
41 1 0.01
42 30 0.33
43 29 0.32
44 31 0.34
45 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (42 bp):
CGTGTAAGACCATGTCTGGGACGTTGACATCGAATTGATTTA
Found at i:77396815 original size:42 final size:41
Alignment explanation
Indices: 77396709--77396862 Score: 148
Period size: 43 Copynumber: 3.6 Consensus size: 41
77396699 TGATATGTGT
* * *
77396709 TTTCGTGTAAGACCATGTCTGGGACGTTGACATCG-ACCTATAA
1 TTTCGTGTAAGACCATGTCTGGGAC-ATGACATCGTA-AT-TGA
77396752 TTTACGTGTAAGACCATGTCTGGGACATCGACATCGTAATTGA
1 TTT-CGTGTAAGACCATGTCTGGGACAT-GACATCGTAATTGA
* * * *
77396795 TTTCGTGTAAGACCCTGTCTGGGATAGTGACATCAATATTTGA
1 TTTCGTGTAAGACCATGTCTGGGACA-TGACATC-GTAATTGA
* * *
77396838 TTACATGTAAGACCACGTCTGGGAC
1 TTTCGTGTAAGACCATGTCTGGGAC
77396863 GTTGGCATTG
Statistics
Matches: 94, Mismatches: 12, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
42 27 0.29
43 36 0.38
44 30 0.32
45 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (41 bp):
TTTCGTGTAAGACCATGTCTGGGACATGACATCGTAATTGA
Found at i:77396851 original size:43 final size:42
Alignment explanation
Indices: 77396753--77396862 Score: 125
Period size: 42 Copynumber: 2.6 Consensus size: 42
77396743 GACCTATAAT
* *
77396753 TTACGTGTAAGACCATGTCTGGGACATCGACATCGTAATTGA
1 TTACGTGTAAGACCCTGTCTGGGACATCGACATCATAATTGA
* * *
77396795 TTTCGTGTAAGACCCTGTCTGGGATAGT-GACATCAATATTTGA
1 TTACGTGTAAGACCCTGTCTGGGACA-TCGACATC-ATAATTGA
*
77396838 TTACATGTAAGACCAC-GTCTGGGAC
1 TTACGTGTAAGACC-CTGTCTGGGAC
77396863 GTTGGCATTG
Statistics
Matches: 57, Mismatches: 8, Indels: 5
0.81 0.11 0.07
Matches are distributed among these distances:
42 29 0.51
43 27 0.47
44 1 0.02
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (42 bp):
TTACGTGTAAGACCCTGTCTGGGACATCGACATCATAATTGA
Found at i:77402298 original size:46 final size:46
Alignment explanation
Indices: 77402248--77402420 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
77402238 TGGTTGAGCA
77402248 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
77402294 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
77402339 CATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
77402387 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
77402421 GGGGCGAGTT
Statistics
Matches: 105, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 60 0.57
47 28 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:77402404 original size:93 final size:93
Alignment explanation
Indices: 77402245--77402415 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
77402235 GGATGGTTGA
* *
77402245 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
77402310 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
77402338 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
77402403 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
77402416 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:77412134 original size:14 final size:14
Alignment explanation
Indices: 77412115--77412144 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
77412105 CACATGGGCT
*
77412115 TGTGGTCGGTCGTG
1 TGTGGTCGGCCGTG
77412129 TGTGGTCGGCCGTG
1 TGTGGTCGGCCGTG
77412143 TG
1 TG
77412145 ACCCAAGTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.00, C:0.17, G:0.50, T:0.33
Consensus pattern (14 bp):
TGTGGTCGGCCGTG
Found at i:77423836 original size:49 final size:48
Alignment explanation
Indices: 77423780--77424004 Score: 185
Period size: 49 Copynumber: 4.7 Consensus size: 48
77423770 ATACATCGAG
*
77423780 GCCGATGCCATGTCCTAGACAGGTCTTCCACTAGCTCTCACTAATCTGT
1 GCCGATGCCATGTCCTAGACAGGTCTTACACTAGCTCTCACT-ATCTGT
** * * * * * **
77423829 GTTGATGCCATGTCCCAAACAGGTCTTACACT-G-ACACAC-CTC-AA
1 GCCGATGCCATGTCCTAGACAGGTCTTACACTAGCTCTCACTATCTGT
* * *
77423873 GCCAATGCCATGTCCCAGATAGGTCTTACACTAGCT-TGCA-TATCT-T
1 GCCGATGCCATGTCCTAGACAGGTCTTACACTAGCTCT-CACTATCTGT
* * * *
77423919 AAGGTCGATGCCATGTCCTAGACAGGTCTTCCACTGGCTCTCATCTATCGGT
1 ---GCCGATGCCATGTCCTAGACAGGTCTTACACTAGCTCTCA-CTATCTGT
*
77423971 GCCGATGCCATGACCTAGACAGGTCTTACACTAG
1 GCCGATGCCATGTCCTAGACAGGTCTTACACTAG
77424005 TACACACATC
Statistics
Matches: 134, Mismatches: 30, Indels: 24
0.71 0.16 0.13
Matches are distributed among these distances:
44 27 0.20
45 3 0.02
46 4 0.03
47 4 0.03
48 1 0.01
49 89 0.66
50 1 0.01
51 4 0.03
52 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.27
Consensus pattern (48 bp):
GCCGATGCCATGTCCTAGACAGGTCTTACACTAGCTCTCACTATCTGT
Found at i:77423947 original size:142 final size:143
Alignment explanation
Indices: 77423683--77424014 Score: 384
Period size: 142 Copynumber: 2.3 Consensus size: 143
77423673 TAAGGTACGA
* * * * * *
77423683 TGCCAATGCCATGTTCCAAACATGGTCTTACACTGGCTCCACATCTAAGTCGATGCCATGTCCCA
1 TGCCGATGCCATGTCCCAAACA-GGTCTTACACTGAC-ACACATCTAAGCCAATGCCATGTCCCA
* * *
77423748 GAAAAGTTTTACACAGACTTTCATACATCGAGGCCGATGCCATGTCCTAGACAGGTCTTCCACTA
64 GAAAAGTCTTACACAGACTTGCATACATCAAGGCCGATGCCATGTCCTAGACAGGTCTTCCACTA
*
77423813 GCTCTCA-CTAATCTG
129 GCTCTCATCT-ATCGG
** *
77423828 TGTTGATGCCATGTCCCAAACAGGTCTTACACTGACACACCTC-AAGCCAATGCCATGTCCCAGA
1 TGCCGATGCCATGTCCCAAACAGGTCTTACACTGACACACATCTAAGCCAATGCCATGTCCCAGA
* * * * *
77423892 TAGGTCTTACACTAG-CTTGCATATC-TTAAGGTCGATGCCATGTCCTAGACAGGTCTTCCACTG
66 AAAGTCTTACAC-AGACTTGCATA-CATCAAGGCCGATGCCATGTCCTAGACAGGTCTTCCACTA
77423955 GCTCTCATCTATCGG
129 GCTCTCATCTATCGG
* * *
77423970 TGCCGATGCCATGACCTAGACAGGTCTTACACTAGTACACACATC
1 TGCCGATGCCATGTCCCAAACAGGTCTTACACT-G-ACACACATC
77424015 ACCCAAATGT
Statistics
Matches: 158, Mismatches: 24, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
142 108 0.68
143 11 0.07
144 21 0.13
145 18 0.11
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.27
Consensus pattern (143 bp):
TGCCGATGCCATGTCCCAAACAGGTCTTACACTGACACACATCTAAGCCAATGCCATGTCCCAGA
AAAGTCTTACACAGACTTGCATACATCAAGGCCGATGCCATGTCCTAGACAGGTCTTCCACTAGC
TCTCATCTATCGG
Found at i:77430664 original size:49 final size:46
Alignment explanation
Indices: 77430516--77430793 Score: 233
Period size: 49 Copynumber: 5.9 Consensus size: 46
77430506 TACGATGCCA
* * * *
77430516 ATGCCATGTTCCAAACATGGTCTTACACTGGCTC-CACATCTAAGTCG
1 ATGCCATGTCCCAGACA-GGTCTTACACTAGCTCTCACATC-GAGTCG
* *
77430563 ATGCCATGTCCCAGATAGGTCTTACACT-GACT-TGCAAACATCGAGGCTG
1 ATGCCATGTCCCAGACAGGTCTTACACTAG-CTCT-C--ACATCGAGTC-G
* * *
77430612 ATGCCATGTCCCAAACAGGTCTTACACTAGCTCTCATTTATCTGTGTCG
1 ATGCCATGTCCCAGACAGGTCTTACACTAGCTCTCA--CATC-GAGTCG
* * * * * *
77430661 ATGCCATGTCCTAGACAGGTCTTACACTA--ACACACCTCAAGCCG
1 ATGCCATGTCCCAGACAGGTCTTACACTAGCTCTCACATCGAGTCG
*
77430705 ATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATCTATCGGAGTCG
1 ATGCCATGTCCCAGACAGGTCTTACACTAGCTCTCA-C-ATC-GAGTCG
* * *
77430754 ATGTCATGTCCCAGACAGGTCTTACACTAGCACACACATC
1 ATGCCATGTCCCAGACAGGTCTTACACTAGCTCTCACATC
77430794 ACCCAAATGT
Statistics
Matches: 185, Mismatches: 30, Indels: 32
0.75 0.12 0.13
Matches are distributed among these distances:
44 30 0.16
45 3 0.02
46 16 0.09
47 23 0.12
48 6 0.03
49 102 0.55
50 5 0.03
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (46 bp):
ATGCCATGTCCCAGACAGGTCTTACACTAGCTCTCACATCGAGTCG
Found at i:77430731 original size:93 final size:93
Alignment explanation
Indices: 77430516--77430788 Score: 309
Period size: 93 Copynumber: 2.9 Consensus size: 93
77430506 TACGATGCCA
* * **
77430516 ATGCCATGTTCCAAACATGGTCTTACACTGGCTC-CA-C-ATCTAAGTCGATGCCATGTCCCAGA
1 ATGCCATGTCCCAAACA-GGTCTTACACTAGCTCTCATCTATCGGAGTCGATGCCATGTCCCAGA
* * * * * *
77430578 TAGGTCTTACACTGACTTGCAAACATCGAGGCTG
65 CAGGTCTTACACT-A---ACACACCTC-AAGCCG
* * * *
77430612 ATGCCATGTCCCAAACAGGTCTTACACTAGCTCTCATTTATCTGTGTCGATGCCATGTCCTAGAC
1 ATGCCATGTCCCAAACAGGTCTTACACTAGCTCTCATCTATCGGAGTCGATGCCATGTCCCAGAC
77430677 AGGTCTTACACTAACACACCTCAAGCCG
66 AGGTCTTACACTAACACACCTCAAGCCG
* * *
77430705 ATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATCTATCGGAGTCGATGTCATGTCCCAGAC
1 ATGCCATGTCCCAAACAGGTCTTACACTAGCTCTCATCTATCGGAGTCGATGCCATGTCCCAGAC
*
77430770 AGGTCTTACACTAGCACAC
66 AGGTCTTACACTAACACAC
77430789 ACATCACCCA
Statistics
Matches: 154, Mismatches: 20, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
93 80 0.52
94 6 0.04
95 15 0.10
96 18 0.12
97 1 0.01
98 34 0.22
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (93 bp):
ATGCCATGTCCCAAACAGGTCTTACACTAGCTCTCATCTATCGGAGTCGATGCCATGTCCCAGAC
AGGTCTTACACTAACACACCTCAAGCCG
Found at i:77433966 original size:21 final size:21
Alignment explanation
Indices: 77433942--77433981 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
77433932 GCCTAGGATG
*
77433942 TGAATTGAATTAAATTGATTA
1 TGAAATGAATTAAATTGATTA
77433963 TGAAATGAATTAAATTGAT
1 TGAAATGAATTAAATTGAT
77433982 GTTAAATTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.45, C:0.00, G:0.15, T:0.40
Consensus pattern (21 bp):
TGAAATGAATTAAATTGATTA
Found at i:77434507 original size:24 final size:24
Alignment explanation
Indices: 77434457--77434508 Score: 70
Period size: 25 Copynumber: 2.2 Consensus size: 24
77434447 CACAAATGTT
*
77434457 GCTCTTATGAGCGTCCTGATATAG
1 GCTCTTATGAGCGTCCTGACATAG
*
77434481 GCTCTTTATGAGCTTCCTGACAT-G
1 GCTC-TTATGAGCGTCCTGACATAG
77434505 GCTC
1 GCTC
77434509 GCTTGAGCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 9 0.36
25 16 0.64
ACGTcount: A:0.17, C:0.25, G:0.23, T:0.35
Consensus pattern (24 bp):
GCTCTTATGAGCGTCCTGACATAG
Found at i:77437089 original size:14 final size:14
Alignment explanation
Indices: 77437070--77437099 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
77437060 GTTGCGTTTG
77437070 TAGTTAAATTAGAT
1 TAGTTAAATTAGAT
77437084 TAGTTAAATTAGAT
1 TAGTTAAATTAGAT
77437098 TA
1 TA
77437100 AAAACAATCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.43, C:0.00, G:0.13, T:0.43
Consensus pattern (14 bp):
TAGTTAAATTAGAT
Found at i:77444106 original size:26 final size:26
Alignment explanation
Indices: 77444077--77444129 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
77444067 TCAAACATGA
77444077 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGT-AATTTAACTCCTAGGGGT
* * *
77444103 ATTTCGGTACTTTATCTCCTAGGGGT
1 ATTTAGGTAATTTAACTCCTAGGGGT
77444129 A
1 A
77444130 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 6 0.26
26 17 0.74
ACGTcount: A:0.23, C:0.17, G:0.23, T:0.38
Consensus pattern (26 bp):
ATTTAGGTAATTTAACTCCTAGGGGT
Found at i:77445418 original size:24 final size:24
Alignment explanation
Indices: 77445379--77445484 Score: 149
Period size: 24 Copynumber: 4.4 Consensus size: 24
77445369 GCCGGCGAAC
*
77445379 TCCTGCTCCTTGATCAGCTCCTAAA
1 TCCT-CTCCTTTATCAGCTCCTAAA
*
77445404 TCTTCTCCTTTATCAGCTCCTAAA
1 TCCTCTCCTTTATCAGCTCCTAAA
*
77445428 TCCTCTCCCTTATCAGCTCCTAAA
1 TCCTCTCCTTTATCAGCTCCTAAA
* *
77445452 TCCTCTCCCTTATCAGCTCCTAAC
1 TCCTCTCCTTTATCAGCTCCTAAA
*
77445476 TCTTCTCCT
1 TCCTCTCCT
77445485 GACAGCCTTT
Statistics
Matches: 74, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
24 71 0.96
25 3 0.04
ACGTcount: A:0.18, C:0.40, G:0.06, T:0.37
Consensus pattern (24 bp):
TCCTCTCCTTTATCAGCTCCTAAA
Found at i:77449035 original size:11 final size:11
Alignment explanation
Indices: 77448999--77449054 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
77448989 CATGGTATGT
77448999 ATGATATGCAC
1 ATGATATGCAC
* *
77449010 ATGACATG--T
1 ATGATATGCAC
77449019 ATGATATGCAC
1 ATGATATGCAC
*
77449030 ATGATATG--T
1 ATGATATGCAC
77449039 ATGATATGCAC
1 ATGATATGCAC
77449050 ATGAT
1 ATGAT
77449055 GTATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:77449054 original size:20 final size:20
Alignment explanation
Indices: 77448988--77449054 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
77448978 GATTTGATAA
*
77448988 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
77449008 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
77449028 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
77449048 ACATGAT
1 ACATGAT
77449055 GTATTCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:77449068 original size:40 final size:39
Alignment explanation
Indices: 77448988--77449068 Score: 110
Period size: 40 Copynumber: 2.0 Consensus size: 39
77448978 GATTTGATAA
* *
77448988 ACATGGTATGTATGATATGCACATGACATGTATGATATGC
1 ACATGATATGTATGATATGCACATGA-ATGTATCATATGC
77449028 ACATGATATGTATGATATGCACATG-ATGTATTCATAATGC
1 ACATGATATGTATGATATGCACATGAATGTA-TCAT-ATGC
77449068 A
1 A
77449069 TTGGGTTGGG
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
38 5 0.14
39 3 0.08
40 29 0.78
ACGTcount: A:0.35, C:0.12, G:0.20, T:0.33
Consensus pattern (39 bp):
ACATGATATGTATGATATGCACATGAATGTATCATATGC
Found at i:77449218 original size:25 final size:24
Alignment explanation
Indices: 77449103--77449222 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
77449093 GAGGAAGTGA
*
77449103 AAAAGGGCTTATGCCCAAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
77449127 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
77449151 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* *
77449175 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
77449199 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
77449223 ATGATAAAGC
Statistics
Matches: 89, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
24 78 0.88
25 11 0.12
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:77449450 original size:31 final size:31
Alignment explanation
Indices: 77449415--77449478 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
77449405 CGTTTACAGT
*
77449415 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
77449446 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
77449477 AA
1 AA
77449479 TATGAAAAGA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:77457129 original size:20 final size:20
Alignment explanation
Indices: 77457100--77457146 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
77457090 GATTTGATAA
*
77457100 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
77457120 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
77457140 ACATGAT
1 ACATGAT
77457147 GTATTCATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:77457222 original size:24 final size:24
Alignment explanation
Indices: 77457195--77457338 Score: 173
Period size: 24 Copynumber: 6.0 Consensus size: 24
77457185 GAGGAAGTGA
77457195 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
77457219 AAAAGGGCTTATGCCTCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
* *
77457243 AAAAGTGCTTATGCCTCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
77457267 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * * * *
77457291 AAAAGGGATTTTTCCCCAGGTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
77457315 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
77457339 ATGATAAAGC
Statistics
Matches: 104, Mismatches: 14, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
24 95 0.91
25 9 0.09
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:77457567 original size:31 final size:31
Alignment explanation
Indices: 77457532--77457595 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
77457522 TATTTACAGT
*
77457532 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
77457563 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
77457594 AA
1 AA
77457596 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:77464101 original size:24 final size:24
Alignment explanation
Indices: 77464005--77464102 Score: 124
Period size: 24 Copynumber: 4.0 Consensus size: 24
77463995 AACTCCTGCT
* *
77464005 CCTTGATCATCTCCTAAATCTTCTC
1 CCTT-ATCAGCTCCTAAATCCTCTC
**
77464030 ATTTATCAGCTCCTAAATCCTCTC
1 CCTTATCAGCTCCTAAATCCTCTC
*
77464054 TCTTATCAGCTCCTAAATCCTCTC
1 CCTTATCAGCTCCTAAATCCTCTC
* *
77464078 CCTTATCAGCTCCTAACTCTTCTC
1 CCTTATCAGCTCCTAAATCCTCTC
77464102 C
1 C
77464103 TGACAACCTT
Statistics
Matches: 64, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
24 62 0.97
25 2 0.03
ACGTcount: A:0.20, C:0.38, G:0.04, T:0.38
Consensus pattern (24 bp):
CCTTATCAGCTCCTAAATCCTCTC
Found at i:77464962 original size:48 final size:48
Alignment explanation
Indices: 77464855--77464986 Score: 165
Period size: 48 Copynumber: 2.8 Consensus size: 48
77464845 TGATATGTGT
** *
77464855 GCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGTTATGAGA
1 GCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGAGACGAGA
* * * * * *
77464903 GCCAGTTTAAGACCATGTTTGGAACATGGAATCGGTATTGAGACGAGG
1 GCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGAGACGAGA
* *
77464951 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 GCTAGTGTAAGACCATGTTTGGAACATGGCATCGGC
77464987 CTCGACATAT
Statistics
Matches: 69, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
48 69 1.00
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGAGACGAGA
Found at i:77469752 original size:51 final size:51
Alignment explanation
Indices: 77469673--77469821 Score: 191
Period size: 51 Copynumber: 2.9 Consensus size: 51
77469663 ACAAATGAAC
*
77469673 TATTGTGAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAA
1 TATTGTGA--TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCC-AAA
*
77469727 -ATTGTGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCAAA
1 TATTGTGATCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCAAA
*
77469776 TTATTG-GTTGCA--TGTGTAGTACTAAGTGCAGGCTACTATGTGTACC
1 -TATTGTGAT-CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACC
77469822 AGATAGCTTC
Statistics
Matches: 87, Mismatches: 4, Indels: 12
0.84 0.04 0.12
Matches are distributed among these distances:
49 34 0.39
50 5 0.06
51 41 0.47
53 7 0.08
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (51 bp):
TATTGTGATCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCAAA
Found at i:77475575 original size:48 final size:48
Alignment explanation
Indices: 77475500--77475679 Score: 193
Period size: 48 Copynumber: 3.8 Consensus size: 48
77475490 TATGTGTGCT
**
77475500 AGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGTTATGAGAGCC
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGACATGAGAGCC
* * * * *
77475548 AGTTTAAGACCATGTTTGGAACATGGCATCGGCATTGAGACGAGAGCT
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGACATGAGAGCC
* * * * * * *
77475596 AGAGTAAGACCATATCTGGGACATGGCATCGGC-CTCGACATGTGAACC
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCAAT-GACATGAGAGCC
*
77475644 AGTGTAAGACCATGTTTAGG-ACATGGCATCGACAAT
1 AGTGTAAGACCATGTTT-GGAACATGGCATCGGCAAT
77475680 TTACCCTTTT
Statistics
Matches: 107, Mismatches: 22, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
47 1 0.01
48 103 0.96
49 3 0.03
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (48 bp):
AGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGACATGAGAGCC
Found at i:77475668 original size:96 final size:96
Alignment explanation
Indices: 77475497--77475674 Score: 234
Period size: 96 Copynumber: 1.9 Consensus size: 96
77475487 TGATATGTGT
* * * ** * *
77475497 GCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGTTATGAGAGCCAGTTTAAGACCATG
1 GCTAGAGTAAGACCATATCTGGAACATGGCATCGGCAATGACATGAGAACCAGTGTAAGACCATG
77475562 TTTGGAACATGGCATCGGCATTGAGACGAGA
66 TTTGGAACATGGCATCGGCATTGAGACGAGA
* * *
77475593 GCTAGAGTAAGACCATATCTGGGACATGGCATCGGC-CTCGACATGTGAACCAGTGTAAGACCAT
1 GCTAGAGTAAGACCATATCTGGAACATGGCATCGGCAAT-GACATGAGAACCAGTGTAAGACCAT
77475657 GTTTAGG-ACATGGCATCG
65 GTTT-GGAACATGGCATCG
77475675 ACAATTTACC
Statistics
Matches: 70, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
95 1 0.01
96 67 0.96
97 2 0.03
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.24
Consensus pattern (96 bp):
GCTAGAGTAAGACCATATCTGGAACATGGCATCGGCAATGACATGAGAACCAGTGTAAGACCATG
TTTGGAACATGGCATCGGCATTGAGACGAGA
Found at i:77478954 original size:40 final size:40
Alignment explanation
Indices: 77478875--77479017 Score: 184
Period size: 40 Copynumber: 3.5 Consensus size: 40
77478865 TCTCGTACAT
*
77478875 TAAGTGCCAATACATAGCC-AAAGCTAT-TTTAATCTCGCACAC
1 TAAGTGCC-ATACATAGCCGAAA-CTATCTTGAA--TCGCACAC
* *
77478917 TAAGTGTCATATATAGCCGAAACT-TACTTGAATCGCACAC
1 TAAGTGCCATACATAGCCGAAACTAT-CTTGAATCGCACAC
*
77478957 TAAGTGCCATACATAGCCGAAGCTATCTTGAATCGCACAC
1 TAAGTGCCATACATAGCCGAAACTATCTTGAATCGCACAC
77478997 TAAGTGCCATACATAGCCGAA
1 TAAGTGCCATACATAGCCGAA
77479018 TTGTCGTCCA
Statistics
Matches: 91, Mismatches: 6, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
40 65 0.71
41 12 0.13
42 14 0.15
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.24
Consensus pattern (40 bp):
TAAGTGCCATACATAGCCGAAACTATCTTGAATCGCACAC
Found at i:77481956 original size:30 final size:30
Alignment explanation
Indices: 77481921--77481981 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
77481911 TAGCTCGCCA
*
77481921 TAAAAACTTCTCAAAAATAAACTTTACTTT
1 TAAAAACTTATCAAAAATAAACTTTACTTT
77481951 TAAAAACTTATCAAAAATAAACTTTACTTT
1 TAAAAACTTATCAAAAATAAACTTTACTTT
77481981 T
1 T
77481982 TCTCCAACTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.48, C:0.15, G:0.00, T:0.38
Consensus pattern (30 bp):
TAAAAACTTATCAAAAATAAACTTTACTTT
Done.