Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 226 of 295
Found at i:77911172 original size:117 final size:117
Alignment explanation
Indices: 77910961--77911184 Score: 369
Period size: 117 Copynumber: 1.9 Consensus size: 117
77910951 TGTGTGAGAT
77910961 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATATCCAGGTAAAGTCCCAAAGGC
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATATCCAGGTAAAGTCCCAAAGGC
*
77911026 ATTCGTGCTGATATTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTA
66 ATTCGTGCTGATATTATATCCGGGATAAGTCCCGAAGGCATTCGTGCTGGTA
* * *
77911078 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGTTGATATTATATCCGGGCT-AAGTCCCATAGG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATATCCAGG-TAAAGTCCCAAAGG
* * *
77911142 CATTTGTGCTGATGTTATATCCGGGATAAGTTCCGAAGGCATT
65 CATTCGTGCTGATATTATATCCGGGATAAGTCCCGAAGGCATT
77911185 TGGGTTGGAA
Statistics
Matches: 99, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
117 98 0.99
118 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.30
Consensus pattern (117 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATATCCAGGTAAAGTCCCAAAGGC
ATTCGTGCTGATATTATATCCGGGATAAGTCCCGAAGGCATTCGTGCTGGTA
Found at i:77911186 original size:39 final size:39
Alignment explanation
Indices: 77910961--77911184 Score: 335
Period size: 39 Copynumber: 5.7 Consensus size: 39
77910951 TGTGTGAGAT
77910961 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA
* *
77911000 TTATATCCAGG-TAAAGTCCCAAAGGCATTCGTGCTGATA
1 TTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGATA
* *
77911039 TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA
*
77911078 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGTTGATA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA
* *
77911117 TTATATCCGGGCTAAGTCCC-ATAGGCATTTGTGCTGATG
1 TTATATCCGGGCTAAGTCCCGA-AGGCATTCGTGCTGATA
* *
77911156 TTATATCCGGGATAAGTTCCGAAGGCATT
1 TTATATCCGGGCTAAGTCCCGAAGGCATT
77911185 TGGGTTGGAA
Statistics
Matches: 168, Mismatches: 13, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
38 2 0.01
39 164 0.98
40 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.30
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA
Found at i:77912955 original size:28 final size:27
Alignment explanation
Indices: 77912923--77913016 Score: 80
Period size: 28 Copynumber: 3.2 Consensus size: 27
77912913 ACAACGCATG
77912923 CAGTAACAGTCTGGGCCTAGGCCCTATT
1 CAGTAACAGTCTGGGCCTA-GCCCTATT
* *
77912951 CAGTATCAGTACAGTCTGGGCCTTAGCCTTATA
1 CAG--T-A--ACAGTCTGGGCC-TAGCCCTATT
* *
77912984 CAGTAACAGTGTGGGCCTAAGCCCAATT
1 CAGTAACAGTCTGGGCCT-AGCCCTATT
77913012 CAGTA
1 CAGTA
77913017 TTAGTACAGT
Statistics
Matches: 53, Mismatches: 6, Indels: 14
0.73 0.08 0.19
Matches are distributed among these distances:
27 1 0.02
28 25 0.47
30 2 0.04
31 2 0.04
33 21 0.40
34 2 0.04
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (27 bp):
CAGTAACAGTCTGGGCCTAGCCCTATT
Found at i:77912966 original size:33 final size:32
Alignment explanation
Indices: 77912923--77913026 Score: 96
Period size: 33 Copynumber: 3.3 Consensus size: 32
77912913 ACAACGCATG
77912923 CAGTAACAGTCTGGGCCTAGGCCCTATTCAGTAT
1 CAGTAACAGTCTGGGCCTA-GCCC-ATTCAGTAT
77912957 CAGT-ACAGTCTGGGCCTTAG-CC-TT-A-TA-
1 CAGTAACAGTCTGGGCC-TAGCCCATTCAGTAT
*
77912984 CAGTAACAGTGTGGGCCTAAGCCCAATTCAGTAT
1 CAGTAACAGTCTGGGCCT-AGCCC-ATTCAGTAT
*
77913018 TAGT-ACAGT
1 CAGTAACAGT
77913027 GCAGACATGT
Statistics
Matches: 59, Mismatches: 2, Indels: 19
0.74 0.03 0.24
Matches are distributed among these distances:
27 5 0.08
28 15 0.25
29 3 0.05
30 2 0.03
31 2 0.03
32 3 0.05
33 20 0.34
34 9 0.15
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (32 bp):
CAGTAACAGTCTGGGCCTAGCCCATTCAGTAT
Found at i:77920230 original size:19 final size:19
Alignment explanation
Indices: 77920203--77920246 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
77920193 TGAATGGCCA
*
77920203 AATTTTTATGCTTTGTTTT
1 AATTATTATGCTTTGTTTT
*
77920222 AATTATTATGTTTTGTTTT
1 AATTATTATGCTTTGTTTT
77920241 AATTAT
1 AATTAT
77920247 AATAACTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.23, C:0.02, G:0.09, T:0.66
Consensus pattern (19 bp):
AATTATTATGCTTTGTTTT
Found at i:77928824 original size:15 final size:15
Alignment explanation
Indices: 77928804--77928846 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 15
77928794 AATCTCTCTC
77928804 TTAGGGTTAGGGTTT
1 TTAGGGTTAGGGTTT
*
77928819 TTAGGGTTAAGG-TT
1 TTAGGGTTAGGGTTT
*
77928833 TT-GGTTTAGGGTTT
1 TTAGGGTTAGGGTTT
77928847 AAGGCATTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
13 7 0.29
14 6 0.25
15 11 0.46
ACGTcount: A:0.14, C:0.00, G:0.37, T:0.49
Consensus pattern (15 bp):
TTAGGGTTAGGGTTT
Found at i:77931850 original size:13 final size:13
Alignment explanation
Indices: 77931829--77931882 Score: 90
Period size: 13 Copynumber: 4.2 Consensus size: 13
77931819 GGCCAAGTCA
77931829 TACGCCCGTGTGC
1 TACGCCCGTGTGC
*
77931842 TACGTCCGTGTGC
1 TACGCCCGTGTGC
*
77931855 TACGCCTGTGTGC
1 TACGCCCGTGTGC
77931868 TACGCCCGTGTGC
1 TACGCCCGTGTGC
77931881 TA
1 TA
77931883 GGCCGTGTAG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 37 1.00
ACGTcount: A:0.09, C:0.33, G:0.30, T:0.28
Consensus pattern (13 bp):
TACGCCCGTGTGC
Found at i:77931865 original size:26 final size:25
Alignment explanation
Indices: 77931829--77931890 Score: 88
Period size: 26 Copynumber: 2.4 Consensus size: 25
77931819 GGCCAAGTCA
*
77931829 TACGCCCGTGTGCTACGTCCGTGTGC
1 TACG-CCGTGTGCTACGCCCGTGTGC
77931855 TACGCCTGTGTGCTACGCCCGTGTGC
1 TACGCC-GTGTGCTACGCCCGTGTGC
*
77931881 TAGGCCGTGT
1 TACGCCGTGT
77931891 AGGAAATTCA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
25 6 0.18
26 27 0.82
ACGTcount: A:0.08, C:0.32, G:0.32, T:0.27
Consensus pattern (25 bp):
TACGCCGTGTGCTACGCCCGTGTGC
Found at i:77947288 original size:42 final size:42
Alignment explanation
Indices: 77947249--77947355 Score: 133
Period size: 43 Copynumber: 2.5 Consensus size: 42
77947239 TAATGAACAC
* * *
77947249 GGACCACTCAACGAGCTCGGATGCCACATATCTCATGAACTT
1 GGACCACTCAACGAGCTCGGATACCACACATATCATGAACTT
* * * *
77947291 GGACCACTCAACAAGTTCGGAATATCATACATATCATGAACTT
1 GGACCACTCAACGAGCTCGG-ATACCACACATATCATGAACTT
*
77947334 GGACCACTCAACGAACTCGGAT
1 GGACCACTCAACGAGCTCGGAT
77947356 TGCTTAATTC
Statistics
Matches: 54, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
42 20 0.37
43 34 0.63
ACGTcount: A:0.33, C:0.28, G:0.18, T:0.21
Consensus pattern (42 bp):
GGACCACTCAACGAGCTCGGATACCACACATATCATGAACTT
Found at i:77950047 original size:17 final size:17
Alignment explanation
Indices: 77950022--77950055 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
77950012 TAGTTATACA
77950022 ATAAAAAAAAAATAATT
1 ATAAAAAAAAAATAATT
* *
77950039 ATAATAAAAAATTAATT
1 ATAAAAAAAAAATAATT
77950056 TTAACATTAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
ATAAAAAAAAAATAATT
Found at i:77950841 original size:14 final size:14
Alignment explanation
Indices: 77950822--77950857 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
77950812 TAAGAAGAAA
77950822 ATTAAATTAAAAAG
1 ATTAAATTAAAAAG
*
77950836 ATTAAATTAAAAGG
1 ATTAAATTAAAAAG
77950850 ATTAAATT
1 ATTAAATT
77950858 GCACAATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.58, C:0.00, G:0.08, T:0.33
Consensus pattern (14 bp):
ATTAAATTAAAAAG
Found at i:77955065 original size:21 final size:20
Alignment explanation
Indices: 77955002--77955079 Score: 65
Period size: 20 Copynumber: 3.9 Consensus size: 20
77954992 TAAGTTTGAA
*
77955002 GTTTAGAGTTT-AGCTTT-GG
1 GTTT-GAGTTTGAGGTTTAGG
* *
77955021 GTTCGAGTTTGAGGTTTATG
1 GTTTGAGTTTGAGGTTTAGG
77955041 GTTT-ATGGTTTGAGGTTT-GG
1 GTTTGA--GTTTGAGGTTTAGG
77955061 AGTTTGAGTTTGAGGTTTA
1 -GTTTGAGTTTGAGGTTTA
77955080 AGATTTAAGA
Statistics
Matches: 47, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
18 6 0.13
19 9 0.19
20 16 0.34
21 15 0.32
22 1 0.02
ACGTcount: A:0.15, C:0.03, G:0.35, T:0.47
Consensus pattern (20 bp):
GTTTGAGTTTGAGGTTTAGG
Found at i:77956425 original size:21 final size:21
Alignment explanation
Indices: 77956391--77956430 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
77956381 ATAAAGAATT
**
77956391 AAAATATTTTAAAAACTTTTA
1 AAAATATTAAAAAAACTTTTA
*
77956412 AAAATATTAAAAAATCTTT
1 AAAATATTAAAAAAACTTT
77956431 CTTTATTTCT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (21 bp):
AAAATATTAAAAAAACTTTTA
Found at i:77959317 original size:29 final size:28
Alignment explanation
Indices: 77959257--77959318 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 28
77959247 GTGATTTTTA
**
77959257 GTGAAATTGTAAAAAAGGGGGTTAATTT
1 GTGAAATTGTAAAAAAGGGGGTTAACGT
*
77959285 GTGAAA-TGTAAAAATGTGGGGTTAAACGT
1 GTGAAATTGTAAAAAAG-GGGGTT-AACGT
77959314 GTGAA
1 GTGAA
77959319 TAAATGATAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
27 9 0.31
28 12 0.41
29 8 0.28
ACGTcount: A:0.39, C:0.02, G:0.31, T:0.29
Consensus pattern (28 bp):
GTGAAATTGTAAAAAAGGGGGTTAACGT
Found at i:77959847 original size:43 final size:43
Alignment explanation
Indices: 77959799--77959966 Score: 196
Period size: 43 Copynumber: 3.9 Consensus size: 43
77959789 GGTTATCGAG
*
77959799 TTGTGATTACATGTAAGACCATGTCTAGGACATTGGCATTATA
1 TTGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTATA
*
77959842 TTGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTA
1 TTGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTATA
*** * * *
77959885 TTGTGATTTTGTGTAAGACCCTCTCTGGGACAGTGGCATTGATA
1 TTGTGATTACATGTAAGACCATGTCTGGGACATTGGCATT-ATA
* * * * *
77959929 -TATAATAACATGTAAGACCATATCTGGGATA-TGGCATT
1 TTGTGATTACATGTAAGACCATGTCTGGGACATTGGCATT
77959967 GTACGAGCTT
Statistics
Matches: 106, Mismatches: 18, Indels: 3
0.83 0.14 0.02
Matches are distributed among these distances:
42 7 0.07
43 97 0.92
44 2 0.02
ACGTcount: A:0.28, C:0.14, G:0.23, T:0.35
Consensus pattern (43 bp):
TTGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTATA
Found at i:77961855 original size:44 final size:44
Alignment explanation
Indices: 77961794--77961950 Score: 139
Period size: 43 Copynumber: 3.6 Consensus size: 44
77961784 TGTGAATTCG
*
77961794 TGTAAGACCACGTCTGGGACGTTGGCATCGACT-TCTATTTTACG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGA-TATCTATTTTACA
* * * *
77961838 TGTAAGACCATGTCTGGGACATCGACATCG-TATCTGA-TTT-CA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATCT-ATTTTACA
* * * * *
77961880 TATAAGACCATGTCTGGGATAG-TGGCATCGATGT-T-TGATTACA
1 TGTAAGACCACGTCTGGGA-CGTTGGCATCGATATCTAT-TTTACA
77961923 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
77961951 TGTATATGTT
Statistics
Matches: 90, Mismatches: 15, Indels: 17
0.74 0.12 0.14
Matches are distributed among these distances:
42 30 0.33
43 33 0.37
44 27 0.30
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.31
Consensus pattern (44 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATATCTATTTTACA
Found at i:77969407 original size:43 final size:43
Alignment explanation
Indices: 77969250--77969408 Score: 114
Period size: 43 Copynumber: 3.7 Consensus size: 43
77969240 TATGTGAATT
* *
77969250 CGTGTAAGACCACGTCTGGGACGTTGGCATCGACTCCTGTT--TTA
1 CGTGTAAGACCACGTCTAGGACGTTGGCATCGA-T-AT-TTGATTA
* * * * * *
77969294 CGTGTAAGACCATGTCTTGGACATCGACATCG-TATCTGACTT-
1 CGTGTAAGACCACGTCTAGGACGTTGGCATCGATATTTGA-TTA
* * *
77969336 CGTCTAAGACC-CTGTCTAGGATAG-TGGCATCGATGTTTGATTA
1 CGTGTAAGACCAC-GTCTAGGA-CGTTGGCATCGATATTTGATTA
*
77969379 CATGTAAGACCACGTCTAGGACGTTGGCAT
1 CGTGTAAGACCACGTCTAGGACGTTGGCAT
77969409 TGTATATGTT
Statistics
Matches: 87, Mismatches: 19, Indels: 19
0.70 0.15 0.15
Matches are distributed among these distances:
40 1 0.01
41 1 0.01
42 27 0.31
43 30 0.34
44 28 0.32
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.30
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTAGGACGTTGGCATCGATATTTGATTA
Found at i:77972634 original size:40 final size:40
Alignment explanation
Indices: 77972590--77972699 Score: 193
Period size: 40 Copynumber: 2.8 Consensus size: 40
77972580 TACTTACTTG
* *
77972590 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACC
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
77972630 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
*
77972670 AATGCCTTTGGGACTTAGCCCGGATATAGT
1 AATGCCTTCGGGACTTAGCCCGGATATAGT
77972700 GACTTAGCCC
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 67 1.00
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
Found at i:77972705 original size:19 final size:19
Alignment explanation
Indices: 77972681--77972718 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
77972671 ATGCCTTTGG
77972681 GACTTAGCCCGGATATAGT
1 GACTTAGCCCGGATATAGT
77972700 GACTTAGCCCGGATATAGT
1 GACTTAGCCCGGATATAGT
77972719 AACTCGCACA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (19 bp):
GACTTAGCCCGGATATAGT
Found at i:77972733 original size:59 final size:59
Alignment explanation
Indices: 77972641--77972758 Score: 227
Period size: 59 Copynumber: 2.0 Consensus size: 59
77972631 ATGCCTTCGG
*
77972641 GACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTTGGGACTTAGCCCGGATATAGT
1 GACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
77972700 GACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
1 GACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
77972759 AACTCGCACA
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 58 1.00
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.25
Consensus pattern (59 bp):
GACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
Found at i:77972755 original size:40 final size:40
Alignment explanation
Indices: 77972700--77972871 Score: 258
Period size: 40 Copynumber: 4.3 Consensus size: 40
77972690 CGGATATAGT
*
77972700 GACTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGG
1 GACTTAGCCCGGA-ACTAGTAACTAGCACAAATGCCTTCGG
*
77972740 GACTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGG
1 GACTTAGCCCGGA-ACTAGTAACTAGCACAAATGCCTTCGG
* *
77972780 GACTTAGCCCGGAACTAGTCACTAGCGCAAATGCCTTCGG
1 GACTTAGCCCGGAACTAGTAACTAGCACAAATGCCTTCGG
* *
77972820 GACTTAGCCCGGAACTAGTCACTAGCGCAAATGCCTTCGG
1 GACTTAGCCCGGAACTAGTAACTAGCACAAATGCCTTCGG
77972860 GACTTAGCCCGG
1 GACTTAGCCCGG
77972872 TTATCATCCA
Statistics
Matches: 128, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
39 1 0.01
40 127 0.99
ACGTcount: A:0.26, C:0.29, G:0.24, T:0.21
Consensus pattern (40 bp):
GACTTAGCCCGGAACTAGTAACTAGCACAAATGCCTTCGG
Found at i:77972776 original size:99 final size:99
Alignment explanation
Indices: 77972605--77972792 Score: 358
Period size: 99 Copynumber: 1.9 Consensus size: 99
77972595 CTTCGGGACA
*
77972605 TAGCCCGGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
1 TAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
*
77972670 AATGCCTTTGGGACTTAGCCCGGATATAGTGACT
66 AATGCCTTCGGGACTTAGCCCGGATATAGTGACT
77972704 TAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
1 TAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
77972769 AATGCCTTCGGGACTTAGCCCGGA
66 AATGCCTTCGGGACTTAGCCCGGA
77972793 ACTAGTCACT
Statistics
Matches: 87, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
99 87 1.00
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (99 bp):
TAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
AATGCCTTCGGGACTTAGCCCGGATATAGTGACT
Found at i:77975890 original size:33 final size:33
Alignment explanation
Indices: 77975853--77975918 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
77975843 GAAATTGACT
77975853 TGGCTACATGGCCTAGCAGATGTCCGTGTGTGC
1 TGGCTACATGGCCTAGCAGATGTCCGTGTGTGC
77975886 TGGCTACATGGCCTAGCAGATGTCCGTGTGTGC
1 TGGCTACATGGCCTAGCAGATGTCCGTGTGTGC
77975919 AACCGTGTGG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.15, C:0.24, G:0.33, T:0.27
Consensus pattern (33 bp):
TGGCTACATGGCCTAGCAGATGTCCGTGTGTGC
Found at i:77977036 original size:43 final size:43
Alignment explanation
Indices: 77976918--77977072 Score: 165
Period size: 43 Copynumber: 3.6 Consensus size: 43
77976908 CTCATACAAG
* *
77976918 GCCAACGTCCTAGACATGGTCTTACATGT-AATCAAATATCAAT
1 GCCAACGTCCCAGACATGGTCTTACATGTAAATCAAATA-CGAT
* * **
77976961 GCC-ACTGTCCCAGACAGGGTCTTAGA-CAAAATCAAATACGAT
1 GCCAAC-GTCCCAGACATGGTCTTACATGTAAATCAAATACGAT
*
77977003 GCCAATGTCCCAGACATGGTCTTACATGTAAATCATAAGT-CGAT
1 GCCAACGTCCCAGACATGGTCTTACATGTAAATCA-AA-TACGAT
* *
77977047 GCCAACGTCCCAAACGTGGTCTTACA
1 GCCAACGTCCCAGACATGGTCTTACA
77977073 GGATAACACA
Statistics
Matches: 92, Mismatches: 14, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
42 26 0.28
43 36 0.39
44 29 0.32
45 1 0.01
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.24
Consensus pattern (43 bp):
GCCAACGTCCCAGACATGGTCTTACATGTAAATCAAATACGAT
Found at i:77984452 original size:43 final size:44
Alignment explanation
Indices: 77984401--77984559 Score: 180
Period size: 43 Copynumber: 3.7 Consensus size: 44
77984391 GGTTATCAAG
*
77984401 ATGTGATTACATGTAAGACCATGTCTGGGACATTAGTATTG-TA
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTAGCATTGTTA
* *
77984444 TTGTGATTACGTGTAAGACCATGTCTGGGACATTAGCATTGTTA
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTAGCATTGTTA
* * * * * *
77984488 AT-TGATTTCATGTAAGACCCTGTCTGGGACAGTGGCATCGAT-
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTAGCATTGTTA
* * * *
77984530 ATGTGATAACACGTAAAACCATATCTGGGA
1 ATGTGATTACATGTAAGACCATGTCTGGGA
77984560 TATGGAATTG
Statistics
Matches: 97, Mismatches: 17, Indels: 4
0.82 0.14 0.03
Matches are distributed among these distances:
42 2 0.02
43 92 0.95
44 3 0.03
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.32
Consensus pattern (44 bp):
ATGTGATTACATGTAAGACCATGTCTGGGACATTAGCATTGTTA
Found at i:77989847 original size:46 final size:46
Alignment explanation
Indices: 77989797--77989972 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
77989787 TGGTTGAGCA
*
77989797 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
77989843 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
77989890 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*
77989936 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
77989973 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 12, Indels: 16
0.80 0.09 0.12
Matches are distributed among these distances:
43 6 0.05
45 5 0.05
46 62 0.56
47 29 0.26
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:77989953 original size:93 final size:93
Alignment explanation
Indices: 77989794--77989964 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
77989784 GGATGGTTGA
* *
77989794 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGTCCGAACTCGTTGAGT
77989859 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
77989887 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGTCC-GAACTCGTTGAG
77989951 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
77989965 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:77993650 original size:43 final size:43
Alignment explanation
Indices: 77993602--77993752 Score: 144
Period size: 43 Copynumber: 3.5 Consensus size: 43
77993592 GGTTATCGAG
* *
77993602 TTGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTA
1 TTGTGATTACATGTAAGACCATGTCTAGGACATTGGCATCGTA
** *
77993645 TTGTGATTATGTGTAAGACCATGTCTAGGATATTGGCATCGTTA
1 TTGTGATTACATGTAAGACCATGTCTAGGACATTGGCATCG-TA
* * * * * * *
77993689 AT-CGATTTCGTGTAAGACCCTGTCTAGAACAGTGGCATCG-A
1 TTGTGATTACATGTAAGACCATGTCTAGGACATTGGCATCGTA
* *
77993730 TATATGATAACATGTAAGACCAT
1 T-TGTGATTACATGTAAGACCAT
77993753 CTCTGGGATA
Statistics
Matches: 86, Mismatches: 19, Indels: 6
0.77 0.17 0.05
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 81 0.94
44 3 0.03
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.33
Consensus pattern (43 bp):
TTGTGATTACATGTAAGACCATGTCTAGGACATTGGCATCGTA
Found at i:78003828 original size:93 final size:93
Alignment explanation
Indices: 78003669--78003840 Score: 247
Period size: 93 Copynumber: 1.8 Consensus size: 93
78003659 AGGATATTTG
* * * ***
78003669 GGCATCTGAACTCATTGAGTTGAGTCTGAGTTCGCTTATGGATGCGAATGTTTGAACTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCTGAGTTCACTAATGGATGCGAATGCCCGAACTCGTTGAG
*
78003734 TTGAGTTCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
78003762 GGCATCCGAGCTCATTGAGTTGAGT-TCGAGTTCACTAATGGATGCGAATGCCCGAGCTCGTTGA
1 GGCATCCGAACTCATTGAGTTGAGTCT-GAGTTCACTAATGGATGCGAATGCCCGAACTCGTTGA
78003826 GTTGAGTCCGAGTTC
65 GTTGAGTCCGAGTTC
78003841 ATTTATGGGC
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
92 1 0.01
93 68 0.99
ACGTcount: A:0.22, C:0.17, G:0.30, T:0.31
Consensus pattern (93 bp):
GGCATCCGAACTCATTGAGTTGAGTCTGAGTTCACTAATGGATGCGAATGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:78013408 original size:48 final size:48
Alignment explanation
Indices: 78013349--78013444 Score: 192
Period size: 48 Copynumber: 2.0 Consensus size: 48
78013339 ATTGAAAGAG
78013349 TGAGAGATGAAGTCATTCATATGATGGTTAATGTTGAAGATGATTTTT
1 TGAGAGATGAAGTCATTCATATGATGGTTAATGTTGAAGATGATTTTT
78013397 TGAGAGATGAAGTCATTCATATGATGGTTAATGTTGAAGATGATTTTT
1 TGAGAGATGAAGTCATTCATATGATGGTTAATGTTGAAGATGATTTTT
78013445 GCCAAATGAT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.31, C:0.04, G:0.25, T:0.40
Consensus pattern (48 bp):
TGAGAGATGAAGTCATTCATATGATGGTTAATGTTGAAGATGATTTTT
Found at i:78024756 original size:48 final size:48
Alignment explanation
Indices: 78024704--78024835 Score: 176
Period size: 48 Copynumber: 2.8 Consensus size: 48
78024694 GCGTTACAGA
**
78024704 ATGTGCTTGTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATAT
1 ATGTGCTTGTGTAAGACCATGTCTGGGACATGGCATCAATGATGATAT
* *
78024752 ATGTGCCTGTGTAAGACCATGTTTGGGACATGGCATCAATGATGATAT
1 ATGTGCTTGTGTAAGACCATGTCTGGGACATGGCATCAATGATGATAT
* * * *
78024800 GTGAG-TTCATGTAAGACCATGTCGGGGACATGGCAT
1 ATGTGCTT-GTGTAAGACCATGTCTGGGACATGGCAT
78024836 TGGTACTTTA
Statistics
Matches: 73, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
47 1 0.01
48 72 0.99
ACGTcount: A:0.25, C:0.15, G:0.30, T:0.30
Consensus pattern (48 bp):
ATGTGCTTGTGTAAGACCATGTCTGGGACATGGCATCAATGATGATAT
Found at i:78026689 original size:43 final size:43
Alignment explanation
Indices: 78026603--78026730 Score: 127
Period size: 43 Copynumber: 3.0 Consensus size: 43
78026593 ATATCGTACA
* * * * *
78026603 ATGCCAACATCCCAGACATGGTCTTACATGTA-ATCACACATCG
1 ATGCCAACATCCCAGACGTGGTCCTACACG-AGAACACATATCG
*
78026646 ATGCC-ACTTTCCCAGACAG-GGTCCTACACGAGAACACATATCG
1 ATGCCAAC-ATCCCAGAC-GTGGTCCTACACGAGAACACATATCG
* * *
78026689 ATGCCAACATCTCAGACGTGGTCTTACATGAGAACACATATC
1 ATGCCAACATCCCAGACGTGGTCCTACACGAGAACACATATC
78026731 AAAAATCCTA
Statistics
Matches: 70, Mismatches: 10, Indels: 10
0.78 0.11 0.11
Matches are distributed among these distances:
42 4 0.06
43 64 0.91
44 2 0.03
ACGTcount: A:0.32, C:0.30, G:0.16, T:0.22
Consensus pattern (43 bp):
ATGCCAACATCCCAGACGTGGTCCTACACGAGAACACATATCG
Found at i:78032184 original size:43 final size:43
Alignment explanation
Indices: 78032122--78032241 Score: 172
Period size: 43 Copynumber: 2.8 Consensus size: 43
78032112 CAATGCTAAC
* * *
78032122 GTCCCAGACGTGGTCTTACATGTA-ATCACATATCGATGCCACT
1 GTCCCAGACGTGGTCTTACACG-AGAACACATATCGATGCCAAT
*
78032165 GTCCTAGACAG-GGTCTTACACGAGAACACATATCGATGCCAAT
1 GTCCCAGAC-GTGGTCTTACACGAGAACACATATCGATGCCAAT
78032208 GTCCCAGACGTGGTCTTACACGAGAACACATATC
1 GTCCCAGACGTGGTCTTACACGAGAACACATATC
78032242 CAAAATCCTA
Statistics
Matches: 69, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
42 2 0.03
43 66 0.96
44 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (43 bp):
GTCCCAGACGTGGTCTTACACGAGAACACATATCGATGCCAAT
Found at i:78037974 original size:40 final size:40
Alignment explanation
Indices: 78037907--78038083 Score: 234
Period size: 40 Copynumber: 4.5 Consensus size: 40
78037897 ACCCAAGTAT
*
78037907 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
78037946 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
78037986 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* * *
78038026 CTTCGGGACATAGCCCGGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
78038066 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
78038084 TTATCATCCG
Statistics
Matches: 120, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
38 1 0.01
39 13 0.11
40 104 0.87
41 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:78045977 original size:40 final size:40
Alignment explanation
Indices: 78045919--78046086 Score: 223
Period size: 40 Copynumber: 4.2 Consensus size: 40
78045909 TCGTCGGGAT
*
78045919 TTAG-CCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
78045958 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
* * * *
78045998 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATAT-AGCAACTCGCACAAATGCCTTCGGGTC
* * * *
78046038 ATAGCCCAGATATAGCAACTCGCACGAATGCCTTCGGATC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
*
78046078 TTAGTCCGG
1 TTAGCCCGG
78046087 TTATCATCCG
Statistics
Matches: 110, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
39 6 0.05
40 102 0.93
41 2 0.02
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
Found at i:78048022 original size:73 final size:73
Alignment explanation
Indices: 78047903--78048054 Score: 295
Period size: 73 Copynumber: 2.1 Consensus size: 73
78047893 GGATTAGTGA
*
78047903 TGACAGAAATAGTTGAAGGAATAATATTTGAAAGGTAAGACATTGAGTGTGACAGTTATGGTTGA
1 TGACAGAAATAGTTGAAGGAATAATATTTGAAAGGTAAGACATTGAGTGTGACAGTTATGGCTGA
78047968 ACAGATTT
66 ACAGATTT
78047976 TGACAGAAATAGTTGAAGGAATAATATTTGAAAGGTAAGACATTGAGTGTGACAGTTATGGCTGA
1 TGACAGAAATAGTTGAAGGAATAATATTTGAAAGGTAAGACATTGAGTGTGACAGTTATGGCTGA
78048041 ACAGATTT
66 ACAGATTT
78048049 TGACAG
1 TGACAG
78048055 TCTTTTTTGA
Statistics
Matches: 78, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
73 78 1.00
ACGTcount: A:0.38, C:0.07, G:0.26, T:0.29
Consensus pattern (73 bp):
TGACAGAAATAGTTGAAGGAATAATATTTGAAAGGTAAGACATTGAGTGTGACAGTTATGGCTGA
ACAGATTT
Found at i:78051284 original size:48 final size:48
Alignment explanation
Indices: 78051216--78051409 Score: 309
Period size: 48 Copynumber: 4.0 Consensus size: 48
78051206 CCGTGCTGAA
* *
78051216 TGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATG
1 TGTGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGTGATGATATG
* * *
78051264 TGTGCCTGTGTAACACCATGTCTAGGACATGGCATCGATGATGATATG
1 TGTGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGTGATGATATG
*
78051312 TGTGCCAATGTAAGACCATGTCTAGGACATGGCATCGGTGATGATATG
1 TGTGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGTGATGATATG
*
78051360 TGTGCCAGAGTAAGACCATGTC-AGGGACATGGCATCGGTGATGATATG
1 TGTGCCAGTGTAAGACCATGTCTA-GGACATGGCATCGGTGATGATATG
78051408 TG
1 TG
78051410 AATTCATGTA
Statistics
Matches: 136, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
47 1 0.01
48 135 0.99
ACGTcount: A:0.25, C:0.17, G:0.31, T:0.27
Consensus pattern (48 bp):
TGTGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGTGATGATATG
Found at i:78051421 original size:48 final size:48
Alignment explanation
Indices: 78051224--78051435 Score: 281
Period size: 48 Copynumber: 4.4 Consensus size: 48
78051214 AATGTGCCTG
* **
78051224 TGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATGTGTGCCTG
1 TGTAAGACCATGTCAGGGACATGGCATCGGTGATGATATGTGTGCCAA
* *
78051272 TGTAACACCATGTCTA-GGACATGGCATCGATGATGATATGTGTGCCAA
1 TGTAAGACCATGTC-AGGGACATGGCATCGGTGATGATATGTGTGCCAA
78051320 TGTAAGACCATGTCTA-GGACATGGCATCGGTGATGATATGTGTGCCAGA
1 TGTAAGACCATGTC-AGGGACATGGCATCGGTGATGATATGTGTGCCA-A
*
78051369 -GTAAGACCATGTCAGGGACATGGCATCGGTGATGATATGTGAAT-TC-A
1 TGTAAGACCATGTCAGGGACATGGCATCGGTGATGATATGTG--TGCCAA
*
78051416 TGTAAGACAATGTCAGGGAC
1 TGTAAGACCATGTCAGGGAC
78051436 TTGGTATTGG
Statistics
Matches: 149, Mismatches: 9, Indels: 12
0.88 0.05 0.07
Matches are distributed among these distances:
47 2 0.01
48 144 0.97
49 2 0.01
50 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.26
Consensus pattern (48 bp):
TGTAAGACCATGTCAGGGACATGGCATCGGTGATGATATGTGTGCCAA
Found at i:78055899 original size:43 final size:43
Alignment explanation
Indices: 78055852--78055990 Score: 151
Period size: 43 Copynumber: 3.2 Consensus size: 43
78055842 CCCAGTTATA
*
78055852 GTCTTACATGATATAATATATCGATGCCAATGTCCCAGACATG
1 GTCTTACATGATATAATATATCAATGCCAATGTCCCAGACATG
** * * *
78055895 GTCTTACACAAAATCATATAAT-AATGCCAATGTCCTAGACATG
1 GTCTTACATGATATAATAT-ATCAATGCCAATGTCCCAGACATG
*
78055938 GTCTTACA-CATAATCACA-ATA-CAATGCCAATGTCCCAGACATG
1 GTCTTACATGAT-AT-A-ATATATCAATGCCAATGTCCCAGACATG
78055981 GTCTTACATG
1 GTCTTACATG
78055991 TAATTACATC
Statistics
Matches: 79, Mismatches: 11, Indels: 11
0.78 0.11 0.11
Matches are distributed among these distances:
42 1 0.01
43 73 0.92
44 4 0.05
45 1 0.01
ACGTcount: A:0.35, C:0.23, G:0.14, T:0.28
Consensus pattern (43 bp):
GTCTTACATGATATAATATATCAATGCCAATGTCCCAGACATG
Found at i:78076852 original size:27 final size:27
Alignment explanation
Indices: 78076822--78076875 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
78076812 TTTATTTCTT
* * *
78076822 AGATTTCCTTGACGTTAGAATCAAATA
1 AGATTTCATTAACATTAGAATCAAATA
*
78076849 AGATTTTATTAACATTAGAATCAAATA
1 AGATTTCATTAACATTAGAATCAAATA
78076876 TTTACCAACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.43, C:0.11, G:0.11, T:0.35
Consensus pattern (27 bp):
AGATTTCATTAACATTAGAATCAAATA
Found at i:78087651 original size:25 final size:25
Alignment explanation
Indices: 78087623--78087670 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
78087613 CACAAATCCA
*
78087623 GCTCTTTATGAGCGTCCTGATATAG
1 GCTCTTTATGAGCGTCCTAATATAG
*
78087648 GCTCTTTATGAGCTTCCTAATAT
1 GCTCTTTATGAGCGTCCTAATAT
78087671 GCCTCGCTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.21, C:0.21, G:0.19, T:0.40
Consensus pattern (25 bp):
GCTCTTTATGAGCGTCCTAATATAG
Found at i:78090808 original size:19 final size:19
Alignment explanation
Indices: 78090784--78090822 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
78090774 ACAAAACATG
78090784 TAAAACTATCAACAATTAT
1 TAAAACTATCAACAATTAT
78090803 TAAAACTATCAACAATTAT
1 TAAAACTATCAACAATTAT
78090822 T
1 T
78090823 CATTTTCCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.51, C:0.15, G:0.00, T:0.33
Consensus pattern (19 bp):
TAAAACTATCAACAATTAT
Found at i:78092974 original size:22 final size:20
Alignment explanation
Indices: 78092949--78092993 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 20
78092939 TCCAATATTG
78092949 TATTTATCATCTCTTATTTTTT
1 TATTTATCAT-TC-TATTTTTT
* *
78092971 TATTTTTTATTCTATTTTTT
1 TATTTATCATTCTATTTTTT
78092991 TAT
1 TAT
78092994 AATTATTAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 11 0.52
21 2 0.10
22 8 0.38
ACGTcount: A:0.18, C:0.09, G:0.00, T:0.73
Consensus pattern (20 bp):
TATTTATCATTCTATTTTTT
Found at i:78092999 original size:19 final size:20
Alignment explanation
Indices: 78092963--78093000 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
78092953 TATCATCTCT
**
78092963 TATTTTTTTATTTTTTATTC
1 TATTTTTTTATTAATTATTC
78092983 TATTTTTTTA-TAATTATT
1 TATTTTTTTATTAATTATT
78093001 AAGTATTTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 6 0.38
20 10 0.62
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (20 bp):
TATTTTTTTATTAATTATTC
Found at i:78098788 original size:27 final size:27
Alignment explanation
Indices: 78098758--78099071 Score: 385
Period size: 27 Copynumber: 11.6 Consensus size: 27
78098748 TTAGTTTACC
78098758 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* ** *
78098785 AAATTACTAAAATACCATTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
78098812 AAATCACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
78098839 AAATTACTAAAATACCCTTAGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
78098866 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
78098893 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
78098920 AAATTACTAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
78098947 AAATTACTAAAATACCCTTGGCTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
78098974 AAATTACCAAAATATCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
78099001 AAATTACCAAAATACCTCTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
78099028 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
**
78099055 AAATTACTGAAATACCC
1 AAATTACCAAAATACCC
78099072 TCGACCTGTA
Statistics
Matches: 243, Mismatches: 44, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 243 1.00
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:78099085 original size:27 final size:27
Alignment explanation
Indices: 78099055--78099126 Score: 101
Period size: 27 Copynumber: 2.7 Consensus size: 27
78099045 CTGATTTGTG
78099055 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACTGAAATACCCTCGACCTGTA
* * *
78099082 AAATTATTGAAATACCTTCGACTTGTA
1 AAATTACTGAAATACCCTCGACCTGTA
78099109 AAATTACT-AAAGTACCCT
1 AAATTACTGAAA-TACCCT
78099127 TAATTTACAG
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
26 3 0.08
27 36 0.92
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.31
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGACCTGTA
Found at i:78099087 original size:54 final size:54
Alignment explanation
Indices: 78098758--78099072 Score: 479
Period size: 54 Copynumber: 5.8 Consensus size: 54
78098748 TTAGTTTACC
*
78098758 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCATTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
* * *
78098812 AAATCACCAAAATACCCTTGGTTTGTAAAATTACTAAAATACCCTTAGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
* * *
78098866 AAATCACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
* *
78098920 AAATTACTAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGCTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
* * *
78098974 AAATTACCAAAATATCCCTAGTTTGTAAAATTACCAAAATA-CCTCTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCT-TGGTTTATA
* * *
78099028 AAATTACCAAAATACCCCTGATTTGTGAAATTACTGAAATACCCT
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCT
78099073 CGACCTGTAA
Statistics
Matches: 235, Mismatches: 24, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
53 3 0.01
54 229 0.97
55 3 0.01
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.32
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
Found at i:78099108 original size:108 final size:105
Alignment explanation
Indices: 78098758--78099124 Score: 396
Period size: 108 Copynumber: 3.4 Consensus size: 105
78098748 TTAGTTTACC
* * *
78098758 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCAT-TGGTTTATAAAATCACCAA
1 AAATTACCAAAATA--CCTCGTTTGTAAAATTACCAAAATACC-TCTGGTTTATAAAATTACCAA
* * *
78098822 AATACCCTTGGTTTGTAAAATTACTAAAATACCCTTAGTTTATA
63 AATACCCCTGGTTTGTAAAATTACTAAAATACCCTGA-CTTATA
* * * *
78098866 AAATCACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACC-CTTGGTTTACAAAATTACTAA
1 AAATTACCAAAATA--CCTCGTTTGTAAAATTACCAAAATACCTC-TGGTTTATAAAATTACCAA
*
78098930 AATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGCTTATA
63 AATACCCCTGGTTTGTAAAATTACTAAAATACCC-TGACTTATA
*
78098974 AAATTACCAAAATATCCCTAGTTTGTAAAATTACCAAAATACCTCTGGTTTATAAAATTACCAAA
1 AAATTACCAAAATA--CCTCGTTTGTAAAATTACCAAAATACCTCTGGTTTATAAAATTACCAAA
* * * * *
78099039 ATACCCCTGATTTGTGAAATTACTGAAATACCCTCGACCTGTA
64 ATACCCCTGGTTTGTAAAATTACTAAAATACCCT-GACTTATA
*** * * *
78099082 AAATTATTGAAATACCTTCGACTTGTAAAATTACTAAAGTACC
1 AAATTACCAAAATACC-TCG-TTTGTAAAATTACCAAAATACC
78099125 CTTAATTTAC
Statistics
Matches: 225, Mismatches: 27, Indels: 14
0.85 0.10 0.05
Matches are distributed among these distances:
106 2 0.01
107 3 0.01
108 218 0.97
109 2 0.01
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.32
Consensus pattern (105 bp):
AAATTACCAAAATACCTCGTTTGTAAAATTACCAAAATACCTCTGGTTTATAAAATTACCAAAAT
ACCCCTGGTTTGTAAAATTACTAAAATACCCTGACTTATA
Found at i:78099202 original size:27 final size:27
Alignment explanation
Indices: 78099172--78099385 Score: 279
Period size: 27 Copynumber: 8.0 Consensus size: 27
78099162 AAAATTATCA
* *
78099172 AAATACCCTTGTAGGATAGAAATACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
* *
78099199 AAATACCCCTGTAGGGTAGAAATACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
* *
78099226 AAATACCCCTGTAGGGTAGAAATACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
*
78099253 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
78099280 AAATACCCTTGTA-GGTAGAATTACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
*
78099306 AAATACCCTTGTAGGGTAGAATTACTG
1 AAATACCCTTGTAGGGTAGAATTACCG
* *
78099333 AAATACTCC-TGTAAGATAGAATTACCG
1 AAATAC-CCTTGTAGGGTAGAATTACCG
* * * *
78099360 AGATACCTTTGTGGGGTAAAATTACC
1 AAATACCCTTGTAGGGTAGAATTACC
78099386 ATTTTACCCC
Statistics
Matches: 170, Mismatches: 14, Indels: 6
0.89 0.07 0.03
Matches are distributed among these distances:
26 27 0.16
27 141 0.83
28 2 0.01
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.24
Consensus pattern (27 bp):
AAATACCCTTGTAGGGTAGAATTACCG
Found at i:78099337 original size:80 final size:80
Alignment explanation
Indices: 78099172--78099385 Score: 284
Period size: 80 Copynumber: 2.6 Consensus size: 80
78099162 AAAATTATCA
* * * *
78099172 AAATACCCTTGTAGGATAGAAATACCGAAATACCCCTGTAGGGTAGAAATACCGAAATACCCCTG
1 AAATACCCCTGTAGGATAGAATTACCGAAATACCCTTGTA-GGTAGAATTACCGAAATACCCCTG
78099237 TAGGGTAGAAATACCG
65 TAGGGTAGAAATACCG
* *
78099253 AAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGTAGAATTACCGAAATACCCTTGT
1 AAATACCCCTGTAGGATAGAATTACCGAAATACCCTTGTAGGTAGAATTACCGAAATACCCCTGT
* *
78099318 AGGGTAGAATTACTG
66 AGGGTAGAAATACCG
* * * * * *
78099333 AAATACTCCTGTAAGATAGAATTACCGAGATACCTTTGTGGGGTAAAATTACC
1 AAATACCCCTGTAGGATAGAATTACCGAAATACCCTTGT-AGGTAGAATTACC
78099386 ATTTTACCCC
Statistics
Matches: 117, Mismatches: 15, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
80 70 0.60
81 47 0.40
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.24
Consensus pattern (80 bp):
AAATACCCCTGTAGGATAGAATTACCGAAATACCCTTGTAGGTAGAATTACCGAAATACCCCTGT
AGGGTAGAAATACCG
Found at i:78099394 original size:107 final size:108
Alignment explanation
Indices: 78099162--78099385 Score: 306
Period size: 107 Copynumber: 2.1 Consensus size: 108
78099152 CTCGATTTAC
* *
78099162 AAAATTATCAAAATACCCTTGTAGGATAGAAATACCGAAATACCCCTGTAGGGTAGAAATACCGA
1 AAAATTACCGAAATACCCTTGTAGGATAGAAATACCGAAATACCCCTGTAGGGTAGAAATACCGA
* *
78099227 AATACCCCTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGT
66 AATACCCCTGTAAGATAGAAATACCGAAATACCCCTGTAGGGT
* * * * *
78099270 AGAATTACCGAAATACCCTTGTAGG-TAGAATTACCGAAATACCCTTGTAGGGTAGAATTACTGA
1 AAAATTACCGAAATACCCTTGTAGGATAGAAATACCGAAATACCCCTGTAGGGTAGAAATACCGA
* * * ** *
78099334 AATACTCCTGTAAGATAGAATTACCGAGATACCTTTGTGGGGT
66 AATACCCCTGTAAGATAGAAATACCGAAATACCCCTGTAGGGT
78099377 AAAATTACC
1 AAAATTACC
78099386 ATTTTACCCC
Statistics
Matches: 100, Mismatches: 16, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
107 78 0.78
108 22 0.22
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.25
Consensus pattern (108 bp):
AAAATTACCGAAATACCCTTGTAGGATAGAAATACCGAAATACCCCTGTAGGGTAGAAATACCGA
AATACCCCTGTAAGATAGAAATACCGAAATACCCCTGTAGGGT
Found at i:78099674 original size:27 final size:26
Alignment explanation
Indices: 78099630--78099680 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
78099620 CTTGCTGCAA
*
78099630 TCTGGTGGCATCGCCACATATATCTAT
1 TCTGGTGACATCGCCACA-ATATCTAT
* *
78099657 TCTGGTGACTTCGTCACAATATCT
1 TCTGGTGACATCGCCACAATATCT
78099681 GGCAACCTCG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (26 bp):
TCTGGTGACATCGCCACAATATCTAT
Found at i:78099815 original size:6 final size:6
Alignment explanation
Indices: 78099804--78099971 Score: 112
Period size: 6 Copynumber: 27.2 Consensus size: 6
78099794 ATTCATATTT
* *
78099804 TGATTC TGATTC TG-TTACC TGATAC TGATTC TGATTC TG-TTACC TAATTC
1 TGATTC TGATTC TGATT--C TGATTC TGATTC TGATTC TGATT--C TGATTC
* * * *
78099854 TGATTC TGGTTC TGATTC TGATTC TG-TTACC TAATAC TGATTT TGATTC
1 TGATTC TGATTC TGATTC TGATTC TGATT--C TGATTC TGATTC TGATTC
* * *
78099903 TG-TTACC TAATTC TGATTC TGATTC TGATTT TGATTC TG-TCACC TGATTC
1 TGATT--C TGATTC TGATTC TGATTC TGATTC TGATTC TGAT--TC TGATTC
* *
78099953 TGATTC TCATTT TGATTC T
1 TGATTC TGATTC TGATTC T
78099972 AGTTCTAATA
Statistics
Matches: 125, Mismatches: 22, Indels: 30
0.71 0.12 0.17
Matches are distributed among these distances:
5 9 0.07
6 97 0.78
7 12 0.10
8 7 0.06
ACGTcount: A:0.18, C:0.18, G:0.14, T:0.49
Consensus pattern (6 bp):
TGATTC
Found at i:78099831 original size:19 final size:19
Alignment explanation
Indices: 78099831--78099959 Score: 104
Period size: 19 Copynumber: 6.6 Consensus size: 19
78099821 CCTGATACTG
78099831 ATTCTGATTCTGTTACCTA
1 ATTCTGATTCTGTTACCTA
*
78099850 ATTCTGATTCTGGTT--CTG
1 ATTCTGATTCT-GTTACCTA
78099868 ATTCTGATTCTGTTACCTAATA
1 ATTCTGATTCTGTTACC---TA
*
78099890 CTGATTTTGATTCTGTTACCTA
1 ---ATTCTGATTCTGTTACCTA
*
78099912 ATTCTGATTCTGATT--CTG
1 ATTCTGATTCTG-TTACCTA
* * *
78099930 ATTTTGATTCTGTCACCTG
1 ATTCTGATTCTGTTACCTA
78099949 ATTCTGATTCT
1 ATTCTGATTCT
78099960 CATTTTGATT
Statistics
Matches: 90, Mismatches: 8, Indels: 24
0.74 0.07 0.20
Matches are distributed among these distances:
17 4 0.04
18 26 0.29
19 36 0.40
20 5 0.06
22 3 0.03
25 16 0.18
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.49
Consensus pattern (19 bp):
ATTCTGATTCTGTTACCTA
Found at i:78099832 original size:25 final size:25
Alignment explanation
Indices: 78099804--78099867 Score: 101
Period size: 25 Copynumber: 2.6 Consensus size: 25
78099794 ATTCATATTT
*
78099804 TGATTCTGATTCTGTTACCTGATAC
1 TGATTCTGATTCTGTTACCTAATAC
*
78099829 TGATTCTGATTCTGTTACCTAATTC
1 TGATTCTGATTCTGTTACCTAATAC
*
78099854 TGATTCTGGTTCTG
1 TGATTCTGATTCTG
78099868 ATTCTGATTC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.17, C:0.19, G:0.17, T:0.47
Consensus pattern (25 bp):
TGATTCTGATTCTGTTACCTAATAC
Found at i:78099870 original size:37 final size:37
Alignment explanation
Indices: 78099822--78099904 Score: 130
Period size: 37 Copynumber: 2.2 Consensus size: 37
78099812 ATTCTGTTAC
* *
78099822 CTGATACTGATTCTGATTCTGTTACCTAATTCTGATT
1 CTGATTCTGATTCTGATTCTGTTACCTAATACTGATT
*
78099859 CTGGTTCTGATTCTGATTCTGTTACCTAATACTGATT
1 CTGATTCTGATTCTGATTCTGTTACCTAATACTGATT
*
78099896 TTGATTCTG
1 CTGATTCTG
78099905 TTACCTAATT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.19, C:0.18, G:0.16, T:0.47
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCTGTTACCTAATACTGATT
Found at i:78099895 original size:25 final size:25
Alignment explanation
Indices: 78099865--78099929 Score: 112
Period size: 25 Copynumber: 2.6 Consensus size: 25
78099855 GATTCTGGTT
78099865 CTGATTCTGATTCTGTTACCTAATA
1 CTGATTCTGATTCTGTTACCTAATA
* *
78099890 CTGATTTTGATTCTGTTACCTAATT
1 CTGATTCTGATTCTGTTACCTAATA
78099915 CTGATTCTGATTCTG
1 CTGATTCTGATTCTG
78099930 ATTTTGATTC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (25 bp):
CTGATTCTGATTCTGTTACCTAATA
Found at i:78099901 original size:62 final size:62
Alignment explanation
Indices: 78099804--78099959 Score: 258
Period size: 62 Copynumber: 2.5 Consensus size: 62
78099794 ATTCATATTT
*
78099804 TGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGGTTC
1 TGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGATTC
* *
78099866 TGATTCTGATTCTGTTACCTAATACTGATTTTGATTCTGTTACCTAATTCTGATTCTGATTC
1 TGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGATTC
* * *
78099928 TGATTTTGATTCTGTCACCTGATTCTGATTCT
1 TGATTCTGATTCTGTTACCTGATACTGATTCT
78099960 CATTTTGATT
Statistics
Matches: 86, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 86 1.00
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.48
Consensus pattern (62 bp):
TGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGATTC
Found at i:78099931 original size:37 final size:37
Alignment explanation
Indices: 78099890--78099969 Score: 124
Period size: 37 Copynumber: 2.2 Consensus size: 37
78099880 TTACCTAATA
* *
78099890 CTGATTTTGATTCTGTTACCTAATTCTGATTCTGATT
1 CTGATTTTGATTCTGTCACCTAATTCTGATTCTCATT
*
78099927 CTGATTTTGATTCTGTCACCTGATTCTGATTCTCATT
1 CTGATTTTGATTCTGTCACCTAATTCTGATTCTCATT
*
78099964 TTGATT
1 CTGATT
78099970 CTAGTTCTAA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.17, C:0.17, G:0.14, T:0.51
Consensus pattern (37 bp):
CTGATTTTGATTCTGTCACCTAATTCTGATTCTCATT
Found at i:78104861 original size:17 final size:19
Alignment explanation
Indices: 78104831--78104874 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
78104821 AAATATGGTA
*
78104831 AAATAATTAGTATAAAAAAAT
1 AAATAA-TA-TATAATAAAAT
78104852 AAATAATATATAATAAAA-
1 AAATAATATATAATAAAAT
78104870 AAATA
1 AAATA
78104875 TATGAGAAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 5 0.23
19 9 0.41
20 2 0.09
21 6 0.27
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.27
Consensus pattern (19 bp):
AAATAATATATAATAAAAT
Found at i:78104932 original size:18 final size:18
Alignment explanation
Indices: 78104909--78104949 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
78104899 GAATATTGAA
78104909 TAATAAAAATATAGTATG
1 TAATAAAAATATAGTATG
78104927 TAATAAAAATATAGTATG
1 TAATAAAAATATAGTATG
*
78104945 AAATA
1 TAATA
78104950 TAATATGGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.10, T:0.32
Consensus pattern (18 bp):
TAATAAAAATATAGTATG
Found at i:78105295 original size:20 final size:20
Alignment explanation
Indices: 78105261--78105299 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
78105251 ATTTTCCATT
78105261 TACAAATTTAGTAAATAATAA
1 TACAAATTTAGTAAA-AATAA
*
78105282 TACAATTTTA-TAAAAATA
1 TACAAATTTAGTAAAAATA
78105300 TATAATATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 4 0.24
21 9 0.53
ACGTcount: A:0.56, C:0.05, G:0.03, T:0.36
Consensus pattern (20 bp):
TACAAATTTAGTAAAAATAA
Found at i:78105313 original size:12 final size:12
Alignment explanation
Indices: 78105296--78105339 Score: 61
Period size: 12 Copynumber: 3.5 Consensus size: 12
78105286 ATTTTATAAA
78105296 AATATATAATAT
1 AATATATAATAT
*
78105308 AATATATAAAATAA
1 AATATAT--AATAT
78105322 AATATATAATAT
1 AATATATAATAT
78105334 AATATA
1 AATATA
78105340 ATTTATAGAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
12 17 0.61
14 11 0.39
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (12 bp):
AATATATAATAT
Found at i:78105320 original size:14 final size:14
Alignment explanation
Indices: 78105297--78105339 Score: 63
Period size: 14 Copynumber: 3.2 Consensus size: 14
78105287 TTTTATAAAA
78105297 ATATATAATATAAT
1 ATATATAATATAAT
*
78105311 ATATA-AA-ATAAA
1 ATATATAATATAAT
78105323 ATATATAATATAAT
1 ATATATAATATAAT
78105337 ATA
1 ATA
78105340 ATTTATAGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
12 9 0.36
13 4 0.16
14 12 0.48
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (14 bp):
ATATATAATATAAT
Found at i:78105389 original size:16 final size:16
Alignment explanation
Indices: 78105350--78105382 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
78105340 ATTTATAGAT
78105350 AAAATATAT-GATAATA
1 AAAATA-ATGGATAATA
78105366 AAAATAATGGATAATA
1 AAAATAATGGATAATA
78105382 A
1 A
78105383 TAGTAATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 2 0.12
16 14 0.88
ACGTcount: A:0.64, C:0.00, G:0.09, T:0.27
Consensus pattern (16 bp):
AAAATAATGGATAATA
Found at i:78107358 original size:206 final size:206
Alignment explanation
Indices: 78107004--78107559 Score: 925
Period size: 206 Copynumber: 2.7 Consensus size: 206
78106994 AAATCTGCTT
*
78107004 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCATAAGCAC
* * * * *
78107069 GCGAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATACCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTT
*
78107134 GGATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
131 GGATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCAAATATG
*
78107199 GAGATGCCAAA
196 GAGACGCCAAA
* *
78107210 CTTCGATTTGTTCTCTGACAATATAGAGATGCCAAATCATCTTAGACTTGCTTCAGCATAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCATAAGCAC
* *
78107275 GTGAAAGCTAAATCAGCTATGAT-TTCGATTTGTTCCTTGTAAACAAAAGGATGCCAAATCATCT
66 GTGAAAGCCAAATCAGCTATG-TCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCT
*
78107339 TGGATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCTGTCAAATAT
130 TGGATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCAAATAT
78107404 GGAGACGCCAAA
195 GGAGACGCCAAA
* * *
78107416 CTTCGATATGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCATAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCATAAGCAC
* *
78107481 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTT
78107546 GGATCTTGCTTCAG
131 GGATC-TGCTTCAG
78107560 CCAGATCTAC
Statistics
Matches: 325, Mismatches: 22, Indels: 5
0.92 0.06 0.01
Matches are distributed among these distances:
205 1 0.00
206 315 0.97
207 9 0.03
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (206 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCATAAGCAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTT
GGATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCAAATATG
GAGACGCCAAA
Found at i:78111129 original size:19 final size:19
Alignment explanation
Indices: 78111102--78111140 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
78111092 GTATTAGAAC
* *
78111102 TTTATTTTATTTTATTTTA
1 TTTACTTTACTTTATTTTA
*
78111121 TTTACTTTACTTTGTTTTA
1 TTTACTTTACTTTATTTTA
78111140 T
1 T
78111141 AGTTTTTAAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.18, C:0.05, G:0.03, T:0.74
Consensus pattern (19 bp):
TTTACTTTACTTTATTTTA
Found at i:78112373 original size:35 final size:35
Alignment explanation
Indices: 78112327--78112397 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
78112317 ATGCATGGAT
78112327 AGGTACTCTACGACACTAGACATAGGCCTATTGTA
1 AGGTACTCTACGACACTAGACATAGGCCTATTGTA
*
78112362 AGGTACTCTACGACACTAGACATAGGCTTATTGTA
1 AGGTACTCTACGACACTAGACATAGGCCTATTGTA
78112397 A
1 A
78112398 TTGTACTTCT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (35 bp):
AGGTACTCTACGACACTAGACATAGGCCTATTGTA
Found at i:78116623 original size:11 final size:11
Alignment explanation
Indices: 78116594--78116623 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
78116584 CTGTTAATGC
*
78116594 TTTCTTTCTTT
1 TTTCTTTTTTT
78116605 TTTCTTTTTTT
1 TTTCTTTTTTT
78116616 TTTCTTTT
1 TTTCTTTT
78116624 ATCTCTATTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (11 bp):
TTTCTTTTTTT
Found at i:78122917 original size:8 final size:8
Alignment explanation
Indices: 78122895--78122927 Score: 57
Period size: 8 Copynumber: 4.0 Consensus size: 8
78122885 AGAATGTGTG
78122895 AAAAGAAA
1 AAAAGAAA
78122903 GAAAAGAAA
1 -AAAAGAAA
78122912 AAAAGAAA
1 AAAAGAAA
78122920 AAAAGAAA
1 AAAAGAAA
78122928 TTAAAACAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 16 0.67
9 8 0.33
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (8 bp):
AAAAGAAA
Found at i:78127218 original size:23 final size:23
Alignment explanation
Indices: 78127165--78127266 Score: 102
Period size: 23 Copynumber: 4.3 Consensus size: 23
78127155 GCCATGATCG
* *
78127165 GTAAGCTCCTCTTGAGCTGATGAATA
1 GTAAGCT-CTATTGAGCTGA--AACA
78127191 GTAAGCTCTATTGAGCTGAAAC-
1 GTAAGCTCTATTGAGCTGAAACA
78127213 GATAAGCTCTATTGAGCTGAAACA
1 G-TAAGCTCTATTGAGCTGAAACA
* *
78127237 GTAAGCT-TTTTCGAGTTG-AACA
1 GTAAGCTCTATT-GAGCTGAAACA
78127259 GTAAGCTC
1 GTAAGCTC
78127267 CTACAAGCTA
Statistics
Matches: 68, Mismatches: 4, Indels: 11
0.82 0.05 0.13
Matches are distributed among these distances:
22 15 0.22
23 34 0.50
24 1 0.01
25 11 0.16
26 7 0.10
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (23 bp):
GTAAGCTCTATTGAGCTGAAACA
Found at i:78132818 original size:16 final size:17
Alignment explanation
Indices: 78132797--78132828 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
78132787 TAGAAGTGGG
78132797 TTGAGAAATT-ATTTAA
1 TTGAGAAATTAATTTAA
78132813 TTGAGAAATTAATTTA
1 TTGAGAAATTAATTTA
78132829 GTTAATTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.44, C:0.00, G:0.12, T:0.44
Consensus pattern (17 bp):
TTGAGAAATTAATTTAA
Found at i:78134239 original size:94 final size:94
Alignment explanation
Indices: 78134130--78134321 Score: 366
Period size: 94 Copynumber: 2.0 Consensus size: 94
78134120 GGCACAAATG
78134130 TTGTTTGATTGATGATTTTTGCTTGAGTATGCTTTTTTGTTATTGTAGGATATTTGGAAGCTGAT
1 TTGTTTGATTGATGATTTTTGCTTGAGTATGCTTTTTTGTTATTGTAGGATATTTGGAAGCTGAT
*
78134195 ATTTATACCCCTAAATTAAATTCCAACCT
66 ATTTATACCCCTAAATTAAATTCCAACCA
*
78134224 TTGTTTGATTGATGATTTTTGCTTGAGTATGCTTTTTTGTTATTGTAGGATATTTGGAAGCTGGT
1 TTGTTTGATTGATGATTTTTGCTTGAGTATGCTTTTTTGTTATTGTAGGATATTTGGAAGCTGAT
78134289 ATTTATACCCCTAAATTAAATTCCAACCA
66 ATTTATACCCCTAAATTAAATTCCAACCA
78134318 TTGT
1 TTGT
78134322 GGTTGTTGGA
Statistics
Matches: 96, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
94 96 1.00
ACGTcount: A:0.24, C:0.11, G:0.18, T:0.47
Consensus pattern (94 bp):
TTGTTTGATTGATGATTTTTGCTTGAGTATGCTTTTTTGTTATTGTAGGATATTTGGAAGCTGAT
ATTTATACCCCTAAATTAAATTCCAACCA
Found at i:78134964 original size:19 final size:20
Alignment explanation
Indices: 78134939--78134977 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
78134929 GGCCTAAATA
*
78134939 AAAAATTGAGATACATTTTC
1 AAAATTTGAGATACATTTTC
*
78134959 AAAATTTGAGATTCATTTT
1 AAAATTTGAGATACATTTT
78134978 TACTTTGAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.41, C:0.08, G:0.10, T:0.41
Consensus pattern (20 bp):
AAAATTTGAGATACATTTTC
Found at i:78138890 original size:49 final size:49
Alignment explanation
Indices: 78138821--78139304 Score: 727
Period size: 49 Copynumber: 10.1 Consensus size: 49
78138811 GAAATGATAG
78138821 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
78138870 TAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
78138917 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
78138966 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
78139013 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
78139062 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
78139109 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
* * * * * * *
78139158 CAGGGTCGAGTGGCCAACGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
78139205 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
* * * * * * * *
78139254 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGAGTATA-A-ATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
78139301 TAAG
1 TAAG
78139305 TCCCGAAGGG
Statistics
Matches: 395, Mismatches: 32, Indels: 18
0.89 0.07 0.04
Matches are distributed among these distances:
47 185 0.47
48 1 0.00
49 209 0.53
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.29
Consensus pattern (49 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
Found at i:78138985 original size:96 final size:96
Alignment explanation
Indices: 78138821--78139304 Score: 797
Period size: 96 Copynumber: 5.0 Consensus size: 96
78138811 GAAATGATAG
* *
78138821 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCTG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
78138886 ATGTGATGAATGTGAAAGTGTATATATGTGA
66 ATGTGATGAATGTGAAAGTGTATATATGTGA
*
78138917 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
78138982 ATGTGATGAATGTGAAAGTGTATATATGTGA
66 ATGTGATGAATGTGAAAGTGTATATATGTGA
78139013 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
78139078 ATGTGATGAATGTGAAAGTGTATATATGTGA
66 ATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * *
78139109 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGACAGGGTCGAGTGGCCA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
*
78139174 ACGTGATGAATGTGAAAGTGTATATATGTGA
66 ATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * *
78139205 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGACAGGGCCGAGTGGCCA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
* * * *
78139270 ACGTGATGGATGTGAAAGAGTATAAATGTGA
66 ATGTGATGAATGTGAAAGTGTATATATGTGA
78139301 TAAG
1 TAAG
78139305 TCCCGAAGGG
Statistics
Matches: 375, Mismatches: 13, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
96 375 1.00
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.29
Consensus pattern (96 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
ATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:78149831 original size:21 final size:21
Alignment explanation
Indices: 78149807--78149858 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
78149797 GCTTTTTCTC
* **
78149807 GATCTTGATCCGTATGAGGTT
1 GATCTTGATCCATACAAGGTT
78149828 GATCTTGATCCATACAAGGTT
1 GATCTTGATCCATACAAGGTT
*
78149849 TATCTTGATC
1 GATCTTGATC
78149859 TAAATAAGTA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.23, C:0.17, G:0.21, T:0.38
Consensus pattern (21 bp):
GATCTTGATCCATACAAGGTT
Found at i:78158090 original size:48 final size:48
Alignment explanation
Indices: 78157982--78158262 Score: 271
Period size: 48 Copynumber: 5.8 Consensus size: 48
78157972 AGGGTAAGAT
* * * *
78157982 GCCGATACCGTGTCCCAGACATGGTCTTACACTGGCTCTCATATATCG-G
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAG--CTCATATATCGAG
* * *
78158031 TGCCGAAGCCATGTTCCAAACATGGTCTTACACTAGCTCATATGTCGAG
1 -GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCATATATCGAG
* * ** *
78158080 GCCGATGCCATGTCCCAGACATGGTTTTACACTAGCTC-TCATATAAAT
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCAT-ATATCGAG
** * * *
78158128 GTTGATTCCATGTTCCAAACATGGTCTTACACTAGCTCATATGTCGAG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCATATATCGAG
* * ** *
78158176 GCCGATGCCATGTCCCAGACGTGGTCTTACACTAGCTC-TCATATAAAT
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCAT-ATATCGAG
* * *
78158224 GCCGATGCCATGTTCCAAACATGGTCTTACGCTGGCTCA
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCA
78158263 CATAACCCTA
Statistics
Matches: 186, Mismatches: 40, Indels: 11
0.78 0.17 0.05
Matches are distributed among these distances:
47 2 0.01
48 153 0.82
49 2 0.01
50 29 0.16
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCATATATCGAG
Found at i:78158173 original size:96 final size:96
Alignment explanation
Indices: 78157982--78158262 Score: 427
Period size: 96 Copynumber: 2.9 Consensus size: 96
78157972 AGGGTAAGAT
* * * ** *
78157982 GCCGATACCGTGTCCCAGACATGGTCTTACACTGGCTCTCATATATCGGTGCCGAAGCCATGTTC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATA--AATGCCGATGCCATGTTC
78158047 CAAACATGGTCTTACACTAGCTCATATGTCGAG
64 CAAACATGGTCTTACACTAGCTCATATGTCGAG
* ** *
78158080 GCCGATGCCATGTCCCAGACATGGTTTTACACTAGCTCTCATATAAATGTTGATTCCATGTTCCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATAAATGCCGATGCCATGTTCCA
78158145 AACATGGTCTTACACTAGCTCATATGTCGAG
66 AACATGGTCTTACACTAGCTCATATGTCGAG
*
78158176 GCCGATGCCATGTCCCAGACGTGGTCTTACACTAGCTCTCATATAAATGCCGATGCCATGTTCCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATAAATGCCGATGCCATGTTCCA
* *
78158241 AACATGGTCTTACGCTGGCTCA
66 AACATGGTCTTACACTAGCTCA
78158263 CATAACCCTA
Statistics
Matches: 166, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
96 125 0.75
98 41 0.25
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (96 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATAAATGCCGATGCCATGTTCCA
AACATGGTCTTACACTAGCTCATATGTCGAG
Found at i:78159444 original size:38 final size:38
Alignment explanation
Indices: 78159359--78159548 Score: 227
Period size: 38 Copynumber: 4.9 Consensus size: 38
78159349 GAATCCAGTC
* * *
78159359 ACCAGCACAAAACCTGCGGGACTTTAAGCTCGAATATAAT
1 ACCAGCACAAAGCCTGCGGGA-TTTAA-CCCGGATATAAT
* * *
78159399 TCCAGCACTAAGCCTGCGGGATTTAACTCGGATATAAT
1 ACCAGCACAAAGCCTGCGGGATTTAACCCGGATATAAT
* * * *
78159437 ACTAGCACGAAGCCTGCGGGATTTAACCCGGAAATATT
1 ACCAGCACAAAGCCTGCGGGATTTAACCCGGATATAAT
*
78159475 ACCAGCACAAAGCCTACGGGATTTAACCCGGATATAAT
1 ACCAGCACAAAGCCTGCGGGATTTAACCCGGATATAAT
* *
78159513 ACCAGCACATAGCCTGCGGGTCTTTAAGCCCGGATA
1 ACCAGCACAAAGCCTGCGGG-ATTTAA-CCCGGATA
78159549 CACATGAAAT
Statistics
Matches: 130, Mismatches: 18, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
38 94 0.72
39 10 0.08
40 26 0.20
ACGTcount: A:0.32, C:0.26, G:0.21, T:0.21
Consensus pattern (38 bp):
ACCAGCACAAAGCCTGCGGGATTTAACCCGGATATAAT
Found at i:78173749 original size:30 final size:30
Alignment explanation
Indices: 78173704--78173763 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
78173694 ATTTAATACG
78173704 AACTTTGGCAAAATTACA-TTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTT-CCCCTA
* *
78173734 AACTTTTGCATAATTACACTTTTTCCCCTA
1 AACTTTGGCAAAATTACACTTTTTCCCCTA
78173764 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 22 0.81
31 5 0.19
ACGTcount: A:0.28, C:0.25, G:0.07, T:0.40
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTTCCCCTA
Found at i:78183246 original size:48 final size:48
Alignment explanation
Indices: 78183174--78183428 Score: 395
Period size: 48 Copynumber: 5.3 Consensus size: 48
78183164 TGAGATCCTA
* *
78183174 GTAAGACCATGTCTAGGACATGGCATCGGTGTTGATATGTGAGCCAGT
1 GTAAGACCATGTCTGGGACGTGGCATCGGTGTTGATATGTGAGCCAGT
*
78183222 GTAAGACCATGTCTGGGACGTGGCATC-GTCGTTGATATGTGAGCCAAT
1 GTAAGACCATGTCTGGGACGTGGCATCGGT-GTTGATATGTGAGCCAGT
* *
78183270 GTAAGACCATGTCTGGGACGTGGCATCGGCGTTGATATGTGAGCCAAT
1 GTAAGACCATGTCTGGGACGTGGCATCGGTGTTGATATGTGAGCCAGT
* *
78183318 GTAAGACCATGTCTGGGACATGGCATCGGTGTTGATATGTGAGCTAGT
1 GTAAGACCATGTCTGGGACGTGGCATCGGTGTTGATATGTGAGCCAGT
* * * *
78183366 GTAAGACCATGTCTGGGACGTGGCATCAGCGTTGATATGTGTGCTAGT
1 GTAAGACCATGTCTGGGACGTGGCATCGGTGTTGATATGTGAGCCAGT
78183414 GTAAGACCATGTCTG
1 GTAAGACCATGTCTG
78183429 AGAATGACAT
Statistics
Matches: 193, Mismatches: 12, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
47 2 0.01
48 190 0.98
49 1 0.01
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.27
Consensus pattern (48 bp):
GTAAGACCATGTCTGGGACGTGGCATCGGTGTTGATATGTGAGCCAGT
Found at i:78187524 original size:40 final size:40
Alignment explanation
Indices: 78187475--78187641 Score: 219
Period size: 40 Copynumber: 4.2 Consensus size: 40
78187465 AGTGTCGTTC
*
78187475 ATAGCCGAAGCTATCTCAAATCGCACACTAAGTGCCATAT
1 ATAGCTGAAGCTATCTCAAATCGCACACTAAGTGCCATAT
*
78187515 ATAG-TCGAAGCTATCTCGATATCGCACACTAAGTGCCATAT
1 ATAGCT-GAAGCTATCTC-AAATCGCACACTAAGTGCCATAT
* ** *
78187556 ATAGCTGAAGCTATGTTGAATCGCTCACTAAGTGCCATAT
1 ATAGCTGAAGCTATCTCAAATCGCACACTAAGTGCCATAT
* * * *
78187596 ATAGCTGAAGCCATGTCAAATTGCACACTAAGTGCCACAT
1 ATAGCTGAAGCTATCTCAAATCGCACACTAAGTGCCATAT
78187636 ATAGCT
1 ATAGCT
78187642 AATTTGTCAT
Statistics
Matches: 111, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
40 75 0.68
41 35 0.32
42 1 0.01
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (40 bp):
ATAGCTGAAGCTATCTCAAATCGCACACTAAGTGCCATAT
Found at i:78187568 original size:81 final size:80
Alignment explanation
Indices: 78187475--78187641 Score: 219
Period size: 81 Copynumber: 2.1 Consensus size: 80
78187465 AGTGTCGTTC
* * *
78187475 ATAGCCGAAGCTATCTCAAATCGCACACTAAGTGCCATATATAG-TCGAAGCTATCTCGATATCG
1 ATAGCTGAAGCTATCTCAAATCGCACACTAAGTGCCATATATAGCT-GAAGCCATCTC-AAATCG
*
78187539 CACACTAAGTGCCATAT
64 CACACTAAGTGCCACAT
* ** * * *
78187556 ATAGCTGAAGCTATGTTGAATCGCTCACTAAGTGCCATATATAGCTGAAGCCATGTCAAATTGCA
1 ATAGCTGAAGCTATCTCAAATCGCACACTAAGTGCCATATATAGCTGAAGCCATCTCAAATCGCA
78187621 CACTAAGTGCCACAT
66 CACTAAGTGCCACAT
78187636 ATAGCT
1 ATAGCT
78187642 AATTTGTCAT
Statistics
Matches: 75, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
80 26 0.35
81 48 0.64
82 1 0.01
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (80 bp):
ATAGCTGAAGCTATCTCAAATCGCACACTAAGTGCCATATATAGCTGAAGCCATCTCAAATCGCA
CACTAAGTGCCACAT
Found at i:78193753 original size:33 final size:33
Alignment explanation
Indices: 78193715--78193780 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
78193705 AAAATTATAA
* * *
78193715 TTATTATATGTACTCTAATACATT-ATTTATTAT
1 TTATTAGATGTAATCTAAT-CATTAATTAATTAT
78193748 TTATTAGATGTAATCTAATCATTAATTAATTAT
1 TTATTAGATGTAATCTAATCATTAATTAATTAT
78193781 GATTATGATT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
32 4 0.14
33 25 0.86
ACGTcount: A:0.36, C:0.08, G:0.05, T:0.52
Consensus pattern (33 bp):
TTATTAGATGTAATCTAATCATTAATTAATTAT
Found at i:78195531 original size:79 final size:81
Alignment explanation
Indices: 78195395--78195579 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
78195385 TTGAATGATG
*
78195395 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
78195459 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
78195474 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
78195536 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
78195554 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
78195580 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:78195593 original size:40 final size:40
Alignment explanation
Indices: 78195396--78195579 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
78195386 TGAATGATGT
* * * *
78195396 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
78195436 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
78195476 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
78195514 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
78195555 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
78195580 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:78195601 original size:79 final size:79
Alignment explanation
Indices: 78195448--78195612 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
78195438 GGACTAAGAT
* **
78195448 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
78195513 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
78195527 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
78195590 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
78195606 CCGAAGG
1 CCGAAGG
78195613 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:78203634 original size:79 final size:81
Alignment explanation
Indices: 78203498--78203682 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
78203488 TTGAATGATG
* *
78203498 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
78203562 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
78203577 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
78203639 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
78203657 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
78203683 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:78203696 original size:40 final size:40
Alignment explanation
Indices: 78203499--78203682 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
78203489 TGAATGATGT
* * * *
78203499 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
78203539 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
78203579 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
78203617 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
78203658 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
78203683 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:78203704 original size:79 final size:79
Alignment explanation
Indices: 78203551--78203715 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
78203541 GGACTAAGAT
* * **
78203551 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
78203616 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
78203630 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
78203693 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
78203709 CCGAAGG
1 CCGAAGG
78203716 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:78208412 original size:49 final size:48
Alignment explanation
Indices: 78208358--78208527 Score: 151
Period size: 49 Copynumber: 3.5 Consensus size: 48
78208348 ATCTAGTTAC
* **
78208358 CAACTAACATGCCCTACTAGTGGTCTATCACATCCGCCACTCTGATTAG
1 CAACTAACATGCCCTACCAGTGGTCTATCACATCAACCA-TCTGATTAG
* * * ** * * * **
78208407 TAACTAACATGCCCTACCAGTAGCCTATCTTATTCATCCATTTGGTTTC
1 CAACTAACATGCCCTACCAGTGGTCTATCACA-TCAACCATCTGATTAG
* * *
78208456 CAACTAACATGCCCTACTAGTGGTCTATCACATCTACCAATCTAATTAG
1 CAACTAACATGCCCTACCAGTGGTCTATCACATCAACC-ATCTGATTAG
* *
78208505 CAACAAACATGCCATACCAGTGG
1 CAACTAACATGCCCTACCAGTGG
78208528 CCCATCTTAT
Statistics
Matches: 91, Mismatches: 28, Indels: 4
0.74 0.23 0.03
Matches are distributed among these distances:
48 4 0.04
49 82 0.90
50 5 0.05
ACGTcount: A:0.29, C:0.30, G:0.12, T:0.28
Consensus pattern (48 bp):
CAACTAACATGCCCTACCAGTGGTCTATCACATCAACCATCTGATTAG
Found at i:78208459 original size:98 final size:98
Alignment explanation
Indices: 78208357--78208537 Score: 281
Period size: 98 Copynumber: 1.8 Consensus size: 98
78208347 AATCTAGTTA
* * * * * *
78208357 CCAACTAACATGCCCTACTAGTGGTCTATCACATCCGCCACTCTGATTAGTAACTAACATGCCCT
1 CCAACTAACATGCCCTACTAGTGGTCTATCACATCCACCAATCTAATTAGCAACAAACATGCCAT
*
78208422 ACCAGTAGCCTATCTTATTCATCCATTTGGTTT
66 ACCAGTAGCCCATCTTATTCATCCATTTGGTTT
*
78208455 CCAACTAACATGCCCTACTAGTGGTCTATCACATCTACCAATCTAATTAGCAACAAACATGCCAT
1 CCAACTAACATGCCCTACTAGTGGTCTATCACATCCACCAATCTAATTAGCAACAAACATGCCAT
*
78208520 ACCAGTGGCCCATCTTAT
66 ACCAGTAGCCCATCTTAT
78208538 CCAGGTACTG
Statistics
Matches: 74, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
98 74 1.00
ACGTcount: A:0.29, C:0.31, G:0.12, T:0.29
Consensus pattern (98 bp):
CCAACTAACATGCCCTACTAGTGGTCTATCACATCCACCAATCTAATTAGCAACAAACATGCCAT
ACCAGTAGCCCATCTTATTCATCCATTTGGTTT
Found at i:78210165 original size:20 final size:19
Alignment explanation
Indices: 78210140--78210179 Score: 71
Period size: 20 Copynumber: 2.1 Consensus size: 19
78210130 AATTCAAAGG
78210140 ATTGATTAAAAATAAAATAA
1 ATTGATTAAAAAT-AAATAA
78210160 ATTGATTAAAAATAAATAA
1 ATTGATTAAAAATAAATAA
78210179 A
1 A
78210180 GTATCTAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (19 bp):
ATTGATTAAAAATAAATAA
Found at i:78214989 original size:8 final size:8
Alignment explanation
Indices: 78214978--78215008 Score: 62
Period size: 8 Copynumber: 3.9 Consensus size: 8
78214968 AGAAAGAGAG
78214978 AAAAATTT
1 AAAAATTT
78214986 AAAAATTT
1 AAAAATTT
78214994 AAAAATTT
1 AAAAATTT
78215002 AAAAATT
1 AAAAATT
78215009 GGTCAATATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (8 bp):
AAAAATTT
Found at i:78215886 original size:13 final size:14
Alignment explanation
Indices: 78215862--78215890 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
78215852 TTTTAGGTCA
78215862 TTTCATTTTTCATT
1 TTTCATTTTTCATT
78215876 TTTCA-TTTTCATT
1 TTTCATTTTTCATT
78215889 TT
1 TT
78215891 CACTTTGGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.72
Consensus pattern (14 bp):
TTTCATTTTTCATT
Found at i:78215892 original size:6 final size:7
Alignment explanation
Indices: 78215862--78215890 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
78215852 TTTTAGGTCA
78215862 TTTCATT
1 TTTCATT
78215869 TTTCATT
1 TTTCATT
78215876 TTTCA-T
1 TTTCATT
78215882 TTTCATT
1 TTTCATT
78215889 TT
1 TT
78215891 CACTTTGGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
6 6 0.29
7 15 0.71
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.72
Consensus pattern (7 bp):
TTTCATT
Found at i:78215942 original size:56 final size:57
Alignment explanation
Indices: 78215879--78215988 Score: 161
Period size: 56 Copynumber: 1.9 Consensus size: 57
78215869 TTTCATTTTT
* *
78215879 CATTTTCATTTTCACTTTGGAGAAAACCA-CATTATTTCCAAATGATTC-CATTTCTC
1 CATTTTCATTTTCACTTTGGAG-AAACCATAATTATTTCAAAATGATTCGCATTTCTC
* *
78215935 CATTTTCATTTTCATTTTGGAGAAACCATAATTATTTCAAAATGTTTCGCATTT
1 CATTTTCATTTTCACTTTGGAGAAACCATAATTATTTCAAAATGATTCGCATTT
78215989 GTATTAATTT
Statistics
Matches: 48, Mismatches: 4, Indels: 3
0.87 0.07 0.05
Matches are distributed among these distances:
55 6 0.12
56 37 0.77
57 5 0.10
ACGTcount: A:0.29, C:0.19, G:0.08, T:0.44
Consensus pattern (57 bp):
CATTTTCATTTTCACTTTGGAGAAACCATAATTATTTCAAAATGATTCGCATTTCTC
Found at i:78216513 original size:52 final size:52
Alignment explanation
Indices: 78216451--78216550 Score: 166
Period size: 52 Copynumber: 1.9 Consensus size: 52
78216441 TAGGTATGCC
78216451 ACACTATGAATGTCAT-ATGGGAATAAATCCATAAACAAGTTCTAGATATGTG
1 ACACTATGAATGTCATGA-GGGAATAAATCCATAAACAAGTTCTAGATATGTG
* *
78216503 ACACTATGAATGTCATGAGGGAATAAATCCATAAATAGGTTCTAGATA
1 ACACTATGAATGTCATGAGGGAATAAATCCATAAACAAGTTCTAGATA
78216551 CATGAGTGGG
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
52 44 0.98
53 1 0.02
ACGTcount: A:0.41, C:0.13, G:0.18, T:0.28
Consensus pattern (52 bp):
ACACTATGAATGTCATGAGGGAATAAATCCATAAACAAGTTCTAGATATGTG
Found at i:78221781 original size:42 final size:42
Alignment explanation
Indices: 78221662--78221825 Score: 193
Period size: 42 Copynumber: 3.9 Consensus size: 42
78221652 TACCGTACGA
* * * *
78221662 ATGCCATATCCCATATATGGTCTTACATGTAATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACGTAGTCTCATATCG
*** * * * * *
78221704 ATTTTAATAGCCTAGCTATGGTGTTACACGAAGTCTCATATCG
1 A-TGCCATATCCCAGATATGGTCTTACACGTAGTCTCATATCG
*
78221747 ATGCCATATCCCAGATATGGTCTTATACGTAGTCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACACGTAGTCTCATATCG
*
78221789 ATGCCATATCCCAGATATGGTCTTACACATAGTCTCA
1 ATGCCATATCCCAGATATGGTCTTACACGTAGTCTCA
78221826 GTAGCCTTAA
Statistics
Matches: 98, Mismatches: 23, Indels: 2
0.80 0.19 0.02
Matches are distributed among these distances:
42 68 0.69
43 30 0.31
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.34
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGTAGTCTCATATCG
Found at i:78226587 original size:42 final size:42
Alignment explanation
Indices: 78226477--78226629 Score: 184
Period size: 42 Copynumber: 3.6 Consensus size: 42
78226467 CCGTACCAAC
* *
78226477 GCCATATCCCAGATATGGTCTTACATGTAA-TCTCGTATCGAT
1 GCCATATCCCAGATATGGTCTTACACG-AAGTCTCATATCGAT
* *
78226519 ACCAATAAT-CCAGCTATGGTCTTACACGAAGTCTCATATCGAT
1 GCC-AT-ATCCCAGATATGGTCTTACACGAAGTCTCATATCGAT
* * * *
78226562 GCCATATGCCAGATATGGTCTTACACGTAGTCTCAAATTGAT
1 GCCATATCCCAGATATGGTCTTACACGAAGTCTCATATCGAT
*
78226604 GCCATATCCCAGACATGGTCTTACAC
1 GCCATATCCCAGATATGGTCTTACAC
78226630 ATTGTCTTTG
Statistics
Matches: 96, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
41 2 0.02
42 60 0.62
43 32 0.33
44 2 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (42 bp):
GCCATATCCCAGATATGGTCTTACACGAAGTCTCATATCGAT
Found at i:78229036 original size:21 final size:20
Alignment explanation
Indices: 78229012--78229062 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
78229002 TCAATTTTAT
*
78229012 ACTTAAATTATTACTTAATTA
1 ACTTAAATTAAT-CTTAATTA
* *
78229033 ACTTTAATTAATCTTAATTT
1 ACTTAAATTAATCTTAATTA
78229053 ACTT-AATTAA
1 ACTTAAATTAA
78229063 GTTACACTCA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
19 6 0.22
20 11 0.41
21 10 0.37
ACGTcount: A:0.41, C:0.10, G:0.00, T:0.49
Consensus pattern (20 bp):
ACTTAAATTAATCTTAATTA
Found at i:78257047 original size:26 final size:27
Alignment explanation
Indices: 78257011--78257063 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
78257001 TGTTAGCTAG
* *
78257011 TGAAATTTTAA-TGTTCGAATGTATGC
1 TGAAATTTTAAGTGTCCGAATGCATGC
*
78257037 TGAATTTTTAAGTGTCCGAATGCATGC
1 TGAAATTTTAAGTGTCCGAATGCATGC
78257064 CAGAATTTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 10 0.43
27 13 0.57
ACGTcount: A:0.28, C:0.11, G:0.21, T:0.40
Consensus pattern (27 bp):
TGAAATTTTAAGTGTCCGAATGCATGC
Found at i:78258657 original size:19 final size:19
Alignment explanation
Indices: 78258635--78258689 Score: 55
Period size: 17 Copynumber: 3.0 Consensus size: 19
78258625 TATTAGTTTA
78258635 AAATAAAATAATATATAGT
1 AAATAAAATAATATATAGT
*
78258654 AAAT-AAATAA-ATA-ATT
1 AAATAAAATAATATATAGT
78258670 AACA-AAAATATATATATAGT
1 AA-ATAAAATA-ATATATAGT
78258690 GTGGGTTAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 9
0.73 0.05 0.22
Matches are distributed among these distances:
16 4 0.14
17 9 0.31
18 7 0.24
19 7 0.24
20 2 0.07
ACGTcount: A:0.64, C:0.02, G:0.04, T:0.31
Consensus pattern (19 bp):
AAATAAAATAATATATAGT
Found at i:78258744 original size:21 final size:21
Alignment explanation
Indices: 78258715--78258755 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
78258705 GATTTAATAA
* *
78258715 TAATAATAATAATATATAATG
1 TAATAATAAAAAAATATAATG
*
78258736 TAATCATAAAAAAATATAAT
1 TAATAATAAAAAAATATAAT
78258756 TGGCGATACA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.34
Consensus pattern (21 bp):
TAATAATAAAAAAATATAATG
Found at i:78258911 original size:10 final size:10
Alignment explanation
Indices: 78258876--78258929 Score: 53
Period size: 10 Copynumber: 5.7 Consensus size: 10
78258866 TATAAATAAT
78258876 TAATAA-ATA
1 TAATAATATA
78258885 T-ATAATATA
1 TAATAATATA
*
78258894 T-GTGAATATA
1 TAAT-AATATA
78258904 TAATAATATA
1 TAATAATATA
*
78258914 TAAAAATA-A
1 TAATAATATA
78258923 TAATAAT
1 TAATAAT
78258930 TTGAGGAAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
8 4 0.11
9 13 0.34
10 20 0.53
11 1 0.03
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.37
Consensus pattern (10 bp):
TAATAATATA
Found at i:78263318 original size:19 final size:19
Alignment explanation
Indices: 78263296--78263348 Score: 53
Period size: 17 Copynumber: 3.0 Consensus size: 19
78263286 TATTAGTTTA
78263296 AAATAAAATAATATATAGT
1 AAATAAAATAATATATAGT
*
78263315 AAAT-AAATAA-ATA-ATT
1 AAATAAAATAATATATAGT
78263331 AACA-AAAAT-ATATATAGT
1 AA-ATAAAATAATATATAGT
78263349 GTGGGTTAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 9
0.72 0.05 0.23
Matches are distributed among these distances:
16 5 0.18
17 11 0.39
18 8 0.29
19 4 0.14
ACGTcount: A:0.64, C:0.02, G:0.04, T:0.30
Consensus pattern (19 bp):
AAATAAAATAATATATAGT
Found at i:78263577 original size:19 final size:19
Alignment explanation
Indices: 78263530--78263579 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
78263520 AATAATTAAT
* *
78263530 AAATATATAAT-ATATGTGA
1 AAATA-ATAATAATATATAA
78263549 AAAT-ATAATAATATATAA
1 AAATAATAATAATATATAA
78263567 AAATAATAATAAT
1 AAATAATAATAAT
78263580 TTGAGGAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
17 5 0.19
18 10 0.37
19 12 0.44
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (19 bp):
AAATAATAATAATATATAA
Found at i:78266046 original size:48 final size:48
Alignment explanation
Indices: 78265978--78266125 Score: 206
Period size: 48 Copynumber: 3.1 Consensus size: 48
78265968 TTGATGTACA
*
78265978 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTAAAATATGTATG
1 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* *
78266026 AGATATATATATGTGATAAAGCCGAAAGGCTAATGTGAAATATGTATG
1 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
** ** * * *
78266074 AGCCATGCATATGTGGTAAATCCAAATGGTTAATGTGAAATATGTATG
1 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
78266122 AGAT
1 AGAT
78266126 GTGTATATAT
Statistics
Matches: 86, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 86 1.00
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.30
Consensus pattern (48 bp):
AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
Found at i:78267202 original size:40 final size:40
Alignment explanation
Indices: 78267127--78267243 Score: 130
Period size: 40 Copynumber: 3.0 Consensus size: 40
78267117 AAGTTCAGTA
* * * *
78267127 TGTTATAT-TCGGGCTAAGTCTCGAAGAGAAATCGTGGTAG
1 TGTTATATCT-GGGCTAAGTCCCGAAGAGCATTCGTGCTAG
*
78267167 TGTTATATCTGGGCTAAGTCCCGAAGAGCATTCGTGCTGG
1 TGTTATATCTGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
* * * *
78267207 TGATGTATCCGGGCTAAGCCCCGAAG-GCATTCGTGCT
1 TGTTATATCTGGGCTAAGTCCCGAAGAGCATTCGTGCT
78267244 TGGACAAAAT
Statistics
Matches: 67, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
39 11 0.16
40 55 0.82
41 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (40 bp):
TGTTATATCTGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
Found at i:78267561 original size:29 final size:28
Alignment explanation
Indices: 78267528--78267626 Score: 92
Period size: 29 Copynumber: 3.5 Consensus size: 28
78267518 ATGATTAGAG
*
78267528 GCACTGTGTGTGCAAATTCTTTTAACTGA
1 GCACTATGTGTGCAAATTC-TTTAACTGA
** *
78267557 GCACTATGTGTGCGAAA-TCGGTAATTGA
1 GCACTATGTGTGC-AAATTCTTTAACTGA
* * * *
78267585 GGCACTGTGTGTGCAAGTTCTTCAACCGA
1 -GCACTATGTGTGCAAATTCTTTAACTGA
78267614 GCACTATGTGTGC
1 GCACTATGTGTGC
78267627 GAGATCGGTC
Statistics
Matches: 55, Mismatches: 12, Indels: 7
0.74 0.16 0.09
Matches are distributed among these distances:
28 20 0.36
29 32 0.58
30 3 0.05
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.31
Consensus pattern (28 bp):
GCACTATGTGTGCAAATTCTTTAACTGA
Found at i:78267635 original size:57 final size:58
Alignment explanation
Indices: 78267525--78267635 Score: 179
Period size: 57 Copynumber: 1.9 Consensus size: 58
78267515 CGAATGATTA
* *
78267525 GAGGCACTGTGTGTGCAAATTCTTTTAACTGAGCACTATGTGTGCGAAATCGGTAATT
1 GAGGCACTGTGTGTGCAAATTCTTTCAACCGAGCACTATGTGTGCGAAATCGGTAATT
* *
78267583 GAGGCACTGTGTGTGCAAGTTC-TTCAACCGAGCACTATGTGTGCGAGATCGGT
1 GAGGCACTGTGTGTGCAAATTCTTTCAACCGAGCACTATGTGTGCGAAATCGGT
78267636 CAGTGGGCAC
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
57 28 0.57
58 21 0.43
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.30
Consensus pattern (58 bp):
GAGGCACTGTGTGTGCAAATTCTTTCAACCGAGCACTATGTGTGCGAAATCGGTAATT
Found at i:78269285 original size:26 final size:27
Alignment explanation
Indices: 78269249--78269301 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
78269239 TGTCAGCTAG
* *
78269249 TGAAATTTTAA-TGTTCGAATGTATGC
1 TGAAATTTTAAGTGTCCGAATGCATGC
*
78269275 TGAATTTTTAAGTGTCCGAATGCATGC
1 TGAAATTTTAAGTGTCCGAATGCATGC
78269302 CAGAATTTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 10 0.43
27 13 0.57
ACGTcount: A:0.28, C:0.11, G:0.21, T:0.40
Consensus pattern (27 bp):
TGAAATTTTAAGTGTCCGAATGCATGC
Found at i:78270635 original size:48 final size:48
Alignment explanation
Indices: 78270571--78270718 Score: 224
Period size: 48 Copynumber: 3.1 Consensus size: 48
78270561 TTGATGTACA
*
78270571 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTAAAATATGTATG
1 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
*
78270619 AGATATATATATGTGGTAAAGCCGAAAGGCTAATGTGAAATATGTATG
1 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
** ** * *
78270667 AGCCATGCATATGTGGTAAAGCCAAATGGTTAATGTGAAATATGTATG
1 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
78270715 AGAT
1 AGAT
78270719 GTGTATATAT
Statistics
Matches: 89, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 89 1.00
ACGTcount: A:0.39, C:0.07, G:0.24, T:0.30
Consensus pattern (48 bp):
AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
Found at i:78275738 original size:93 final size:93
Alignment explanation
Indices: 78275627--78275797 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
78275617 GCCCCTAATT
* * *
78275627 GAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAATTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
*
78275692 TGAGTTCGAATGCCTAGTTACATCTCAC
66 CGAGTTCGAATGCCTAGTTACATCTCAC
* * * *
78275720 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
*
78275785 CGAGTTCGGATGC
66 CGAGTTCGAATGC
78275798 TCAACCATCC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGAATGCCTAGTTACATCTCAC
Found at i:78275785 original size:46 final size:45
Alignment explanation
Indices: 78275626--78275794 Score: 162
Period size: 46 Copynumber: 3.7 Consensus size: 45
78275616 CGCCCCTAAT
* * * * *
78275626 TGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCAT-AA
* * * * * *
78275672 TGAATTCGGACTCAACTCAATGAGTTCGAATGCCTAGTTACAT-C-TCA
1 TGAACTCGGACTCAACTCAACGAGTTCG---GAC-ATTTGCATCCATAA
*
78275719 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAA
78275764 GTGAACTCGGACTCAACTCAACGAGTTCGGA
1 -TGAACTCGGACTCAACTCAACGAGTTCGGA
78275795 TGCTCAACCA
Statistics
Matches: 98, Mismatches: 18, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
43 6 0.06
44 3 0.03
45 2 0.02
46 53 0.54
47 26 0.27
48 1 0.01
49 3 0.03
50 4 0.04
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (45 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAA
Found at i:78283314 original size:93 final size:93
Alignment explanation
Indices: 78283201--78283371 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
78283191 GCCCCTAAGT
* * * * *
78283201 GAACTCGGGCTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGGCTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
78283266 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
78283294 GAACTCAGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
78283359 CGAGTTCGGATGC
66 CGAGTTCGGATGC
78283372 TCAACCATCC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:78283368 original size:46 final size:46
Alignment explanation
Indices: 78283196--78283368 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 46
78283186 AACCCGCCCC
* * * * *
78283196 TAAGTGAACTCGGGCTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * * *
78283242 TAAATGAACTCGGGCTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* * *
78283290 TCA-CGAACTCAGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
78283335 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
78283369 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 59 0.57
47 27 0.26
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:78286295 original size:9 final size:9
Alignment explanation
Indices: 78286281--78286307 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
78286271 AAACTTCACC
78286281 AATTGATCA
1 AATTGATCA
78286290 AATTGATCA
1 AATTGATCA
78286299 AATTGATCA
1 AATTGATCA
78286308 TTGGGTTAGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.44, C:0.11, G:0.11, T:0.33
Consensus pattern (9 bp):
AATTGATCA
Found at i:78289331 original size:45 final size:45
Alignment explanation
Indices: 78289267--78289352 Score: 127
Period size: 45 Copynumber: 1.9 Consensus size: 45
78289257 TATACGCTTA
** *
78289267 AAATGAGTAAGAGTATAGCTAAAAGATACTATGATATCATGACGG
1 AAATGAGTAAGACCATAGCTAAAAGATACTATGACATCATGACGG
* *
78289312 AAATGAGTAAGACCATAGCTGAAAGATGCTATGACATCATG
1 AAATGAGTAAGACCATAGCTAAAAGATACTATGACATCATG
78289353 GTAGTTAGGA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 36 1.00
ACGTcount: A:0.43, C:0.12, G:0.22, T:0.23
Consensus pattern (45 bp):
AAATGAGTAAGACCATAGCTAAAAGATACTATGACATCATGACGG
Done.