Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 228 of 295
Found at i:78657970 original size:26 final size:26
Alignment explanation
Indices: 78657934--78657985 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
78657924 AATTAACTAA
*
78657934 ATAAATGATGTTCATCTTCATCAATT
1 ATAAAAGATGTTCATCTTCATCAATT
78657960 ATAAAAGATGTTCATCTTCATCAATT
1 ATAAAAGATGTTCATCTTCATCAATT
78657986 TAGTCCCCCT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.37, C:0.15, G:0.08, T:0.40
Consensus pattern (26 bp):
ATAAAAGATGTTCATCTTCATCAATT
Found at i:78664164 original size:17 final size:17
Alignment explanation
Indices: 78664138--78664178 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
78664128 TAGGAGTTTA
*
78664138 ATTAGATGTTGATTTTG
1 ATTAGGTGTTGATTTTG
78664155 ATTAGGTGTTGATTTTG
1 ATTAGGTGTTGATTTTG
78664172 ATTAGGT
1 ATTAGGT
78664179 TTTCACATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.27, T:0.51
Consensus pattern (17 bp):
ATTAGGTGTTGATTTTG
Found at i:78672420 original size:30 final size:29
Alignment explanation
Indices: 78672384--78672445 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 29
78672374 TAGAAGTTTT
*
78672384 GGCACTAAGTGTGGGATTTAAACTAGCTTC
1 GGCACTAAGTGTGCGATTT-AACTAGCTTC
78672414 GGCACTAAGTGTGCGATTTAACTAGCTTC
1 GGCACTAAGTGTGCGATTTAACTAGCTTC
78672443 GGC
1 GGC
78672446 TATTTGAGGA
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 13 0.42
30 18 0.58
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.29
Consensus pattern (29 bp):
GGCACTAAGTGTGCGATTTAACTAGCTTC
Found at i:78688400 original size:37 final size:37
Alignment explanation
Indices: 78688359--78688436 Score: 149
Period size: 37 Copynumber: 2.1 Consensus size: 37
78688349 GAAGCTATAG
78688359 GTATGTATAATGCCTAAGTGGTAGATGATGTTATGTA
1 GTATGTATAATGCCTAAGTGGTAGATGATGTTATGTA
78688396 GTATGTATAATGCCTAAGTGGTAGATGATGTTATGTA
1 GTATGTATAATGCCTAAGTGGTAGATGATGTTATGTA
78688433 -TATG
1 GTATG
78688437 AATCTCATTG
Statistics
Matches: 41, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
36 4 0.10
37 37 0.90
ACGTcount: A:0.29, C:0.05, G:0.27, T:0.38
Consensus pattern (37 bp):
GTATGTATAATGCCTAAGTGGTAGATGATGTTATGTA
Found at i:78707552 original size:25 final size:25
Alignment explanation
Indices: 78707524--78707572 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
78707514 TACAGTCCAT
* *
78707524 CTATAGTAGTCTCAGTATATACTAC
1 CTATAGCAGTCTCAGGATATACTAC
*
78707549 CTATAGCAGTTTCAGGATATACTA
1 CTATAGCAGTCTCAGGATATACTA
78707573 TCAAAAATAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35
Consensus pattern (25 bp):
CTATAGCAGTCTCAGGATATACTAC
Found at i:78708052 original size:17 final size:18
Alignment explanation
Indices: 78708030--78708072 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
78708020 AAGTAGTTAT
*
78708030 AATCCATAA-CTAATAAA
1 AATCCATAATCTAAGAAA
* *
78708047 AATCCAAAATTTAAGAAA
1 AATCCATAATCTAAGAAA
78708065 AATCCATA
1 AATCCATA
78708073 GAGGCCATAT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 8 0.38
18 13 0.62
ACGTcount: A:0.58, C:0.16, G:0.02, T:0.23
Consensus pattern (18 bp):
AATCCATAATCTAAGAAA
Found at i:78712729 original size:20 final size:20
Alignment explanation
Indices: 78712699--78712743 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
78712689 CTGTTTTATT
78712699 ATGGG-CCAACTGTATTAAA
1 ATGGGCCCAACTGTATTAAA
* *
78712718 ATGGGCCCAACTGTGTTAAT
1 ATGGGCCCAACTGTATTAAA
78712738 ATGGGC
1 ATGGGC
78712744 AAGACCCAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.27
Consensus pattern (20 bp):
ATGGGCCCAACTGTATTAAA
Found at i:78712873 original size:28 final size:28
Alignment explanation
Indices: 78712772--78712885 Score: 81
Period size: 28 Copynumber: 3.9 Consensus size: 28
78712762 ACTTGTAATA
* * *
78712772 GGGCTACGGCCCAGACTGATACTGATAT
1 GGGCTAAGGCCCAGATTAATACTGATAT
* *
78712800 GGGCT-AGGCCCAGTATGCTCTGATATTG-TAAT
1 GGGCTAAGGCCCAG-A---T-TAATACTGAT-AT
*
78712832 AGGGCTATGGCCCAGATTAATACTGATAT
1 -GGGCTAAGGCCCAGATTAATACTGATAT
*
78712861 GGGCTAAGGCCCAG-TTAACACTGAT
1 GGGCTAAGGCCCAGATTAATACTGAT
78712886 TTCTGAATAG
Statistics
Matches: 69, Mismatches: 8, Indels: 19
0.72 0.08 0.20
Matches are distributed among these distances:
27 17 0.25
28 19 0.28
29 8 0.12
30 2 0.03
31 1 0.01
32 9 0.13
33 6 0.09
34 7 0.10
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (28 bp):
GGGCTAAGGCCCAGATTAATACTGATAT
Found at i:78715151 original size:20 final size:20
Alignment explanation
Indices: 78715053--78715151 Score: 58
Period size: 20 Copynumber: 5.0 Consensus size: 20
78715043 CGTATAACTA
* *
78715053 TAATTCGTCCATATAACCAG
1 TAATTCATCCATATAAACAG
* * * *
78715073 TAGTTCATTCATGTAAATAG
1 TAATTCATCCATATAAACAG
* *
78715093 TAGTTCAT-CAGTA-ATAACAA
1 TAATTCATCCA-TATA-AACAG
** * *
78715113 TAATTTGTCCGTATTAACAG
1 TAATTCATCCATATAAACAG
78715133 TAATTCATCCATATAAACA
1 TAATTCATCCATATAAACA
78715152 CATATCTTAT
Statistics
Matches: 56, Mismatches: 19, Indels: 8
0.67 0.23 0.10
Matches are distributed among these distances:
19 3 0.05
20 52 0.93
21 1 0.02
ACGTcount: A:0.38, C:0.17, G:0.10, T:0.34
Consensus pattern (20 bp):
TAATTCATCCATATAAACAG
Found at i:78715381 original size:22 final size:23
Alignment explanation
Indices: 78715296--78715405 Score: 125
Period size: 23 Copynumber: 4.8 Consensus size: 23
78715286 AGCCATGATT
*
78715296 GGTAAGCCCCTATTGAGCTGAAAC
1 GGTAAG-CTCTATTGAGCTGAAAC
78715320 GGTAAGCTCTATTGAGCTGAAAC
1 GGTAAGCTCTATTGAGCTGAAAC
78715343 GGTAAGCTCTATTGAGCTG-AAC
1 GGTAAGCTCTATTGAGCTGAAAC
* * *
78715365 AGTAAGCTC-ATACGAGCTAAAAC
1 GGTAAGCTCTAT-TGAGCTGAAAC
* * *
78715388 GGTACGATCTAATGAGCT
1 GGTAAGCTCTATTGAGCT
78715406 AAAAATAGTA
Statistics
Matches: 74, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
21 2 0.03
22 16 0.22
23 49 0.66
24 7 0.09
ACGTcount: A:0.32, C:0.20, G:0.25, T:0.24
Consensus pattern (23 bp):
GGTAAGCTCTATTGAGCTGAAAC
Found at i:78715382 original size:45 final size:44
Alignment explanation
Indices: 78715296--78715446 Score: 131
Period size: 45 Copynumber: 3.2 Consensus size: 44
78715286 AGCCATGATT
* * * *
78715296 GGTAAGCCCCTATTGAGCTGAAACGGTAAGCTCTATTGAGCTGAAAC
1 GGTAAG-CTCTATTGAGCTG-AACAGTAAGCTCTA-CGAGCTAAAAC
78715343 GGTAAGCTCTATTGAGCTGAACAGTAAGCTCATACGAGCTAAAAC
1 GGTAAGCTCTATTGAGCTGAACAGTAAGCTC-TACGAGCTAAAAC
* * * * *
78715388 GGTACGATCTAATGAGCTAAAAATAGTAAGCTCTTACGAGCTAATATATC
1 GGTAAGCTCTATTGAGCT--GAACAGTAAGCTC-TACGAGCTAA-A-A-C
78715438 GGTAAGCTC
1 GGTAAGCTC
78715447 ATACAAGCTG
Statistics
Matches: 86, Mismatches: 12, Indels: 9
0.80 0.11 0.08
Matches are distributed among these distances:
45 35 0.41
46 14 0.16
47 27 0.31
48 1 0.01
49 1 0.01
50 8 0.09
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.25
Consensus pattern (44 bp):
GGTAAGCTCTATTGAGCTGAACAGTAAGCTCTACGAGCTAAAAC
Found at i:78715428 original size:24 final size:24
Alignment explanation
Indices: 78715362--78715431 Score: 70
Period size: 24 Copynumber: 3.0 Consensus size: 24
78715352 TATTGAGCTG
*
78715362 AACAGTAAGCTCATACGAGCT-AA
1 AACAGTAAGCTCTTACGAGCTAAA
* * * * *
78715385 AACGGTACGATCTAATGAGCTAAA
1 AACAGTAAGCTCTTACGAGCTAAA
*
78715409 AATAGTAAGCTCTTACGAGCTAA
1 AACAGTAAGCTCTTACGAGCTAA
78715432 TATATCGGTA
Statistics
Matches: 34, Mismatches: 12, Indels: 1
0.72 0.26 0.02
Matches are distributed among these distances:
23 15 0.44
24 19 0.56
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.21
Consensus pattern (24 bp):
AACAGTAAGCTCTTACGAGCTAAA
Found at i:78726801 original size:47 final size:47
Alignment explanation
Indices: 78726683--78726855 Score: 191
Period size: 45 Copynumber: 3.7 Consensus size: 47
78726673 GGATGGTTGA
*
78726683 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCGAAT
* *
78726731 G--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATG-TAACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCGAA-T
*
78726774 AGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-
1 --GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCGAAT
* *
78726823 -C-GCCGAGCTCGTTGAGTTGAGTCCGAGTTCACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT
78726856 TAGGGGCGGG
Statistics
Matches: 108, Mismatches: 8, Indels: 21
0.79 0.06 0.15
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 33 0.31
46 30 0.28
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (47 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCGAAT
Found at i:78730778 original size:27 final size:27
Alignment explanation
Indices: 78730741--78730807 Score: 80
Period size: 27 Copynumber: 2.5 Consensus size: 27
78730731 CGAGGGCAAA
* * * *
78730741 CAGTCATTTTACCCTACAGGGGTATTT
1 CAGTAATTTTACACTACAAGAGTATTT
* *
78730768 TAGTATTTTTACACTACAAGAGTATTT
1 CAGTAATTTTACACTACAAGAGTATTT
78730795 CAGTAATTTTACA
1 CAGTAATTTTACA
78730808 AACCGGGGTC
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.30, C:0.16, G:0.13, T:0.40
Consensus pattern (27 bp):
CAGTAATTTTACACTACAAGAGTATTT
Found at i:78731193 original size:10 final size:9
Alignment explanation
Indices: 78731160--78731193 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
78731150 GGGACCATGG
78731160 GGCCCATTA
1 GGCCCATTA
*
78731169 GGCCCATTT
1 GGCCCATTA
78731178 GGCCCATTGA
1 GGCCCATT-A
78731188 GGCCCA
1 GGCCCA
78731194 GTATACGAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 16 0.73
10 6 0.27
ACGTcount: A:0.18, C:0.35, G:0.26, T:0.21
Consensus pattern (9 bp):
GGCCCATTA
Found at i:78733247 original size:18 final size:18
Alignment explanation
Indices: 78733221--78733256 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
78733211 AGATATTTGC
*
78733221 TTTGTAACTTATTAAGTT
1 TTTGAAACTTATTAAGTT
*
78733239 TTTGAAACTTATTTAGTT
1 TTTGAAACTTATTAAGTT
78733257 ACCTTTCCTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.28, C:0.06, G:0.11, T:0.56
Consensus pattern (18 bp):
TTTGAAACTTATTAAGTT
Found at i:78741884 original size:20 final size:20
Alignment explanation
Indices: 78741859--78741921 Score: 59
Period size: 20 Copynumber: 3.5 Consensus size: 20
78741849 TTGGACAAAA
78741859 GACTAAATCATAATAAATTG
1 GACTAAATCATAATAAATTG
*
78741879 GACTAAATC-GAAT--A-T-
1 GACTAAATCATAATAAATTG
78741894 -ACCT-AATCATAATAAATTG
1 GA-CTAAATCATAATAAATTG
78741913 GACTAAATC
1 GACTAAATC
78741922 GAATATACCT
Statistics
Matches: 33, Mismatches: 2, Indels: 16
0.65 0.04 0.31
Matches are distributed among these distances:
14 5 0.15
15 5 0.15
16 1 0.03
17 2 0.06
18 1 0.03
19 5 0.15
20 14 0.42
ACGTcount: A:0.48, C:0.14, G:0.10, T:0.29
Consensus pattern (20 bp):
GACTAAATCATAATAAATTG
Found at i:78741907 original size:34 final size:34
Alignment explanation
Indices: 78741864--78741933 Score: 140
Period size: 34 Copynumber: 2.1 Consensus size: 34
78741854 CAAAAGACTA
78741864 AATCATAATAAATTGGACTAAATCGAATATACCT
1 AATCATAATAAATTGGACTAAATCGAATATACCT
78741898 AATCATAATAAATTGGACTAAATCGAATATACCT
1 AATCATAATAAATTGGACTAAATCGAATATACCT
78741932 AA
1 AA
78741934 AACTTAAAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.49, C:0.14, G:0.09, T:0.29
Consensus pattern (34 bp):
AATCATAATAAATTGGACTAAATCGAATATACCT
Found at i:78756649 original size:20 final size:19
Alignment explanation
Indices: 78756626--78756742 Score: 69
Period size: 20 Copynumber: 5.9 Consensus size: 19
78756616 CTCCAAGCAG
78756626 AGGCACAAATGTGCAATCAA
1 AGGCACAAA-GTGCAATCAA
*
78756646 AGGCATAGAAGTGCAA--AA
1 AGGCACA-AAGTGCAATCAA
* * * *
78756664 GAGACACCAATGTG-TATACAG
1 -AGGCA-CAAAGTGCAAT-CAA
*
78756685 AGGCATCAAAGTGCAAACAA
1 AGGCA-CAAAGTGCAATCAA
* *
78756705 AGGCACGAATGTGCAATCAG
1 AGGCAC-AAAGTGCAATCAA
78756725 AGGCATCAAAGTGCAATC
1 AGGCA-CAAAGTGCAATC
78756743 CCATTCAAGT
Statistics
Matches: 72, Mismatches: 16, Indels: 18
0.68 0.15 0.17
Matches are distributed among these distances:
18 3 0.04
19 9 0.12
20 55 0.76
21 5 0.07
ACGTcount: A:0.43, C:0.19, G:0.24, T:0.15
Consensus pattern (19 bp):
AGGCACAAAGTGCAATCAA
Found at i:78756727 original size:40 final size:39
Alignment explanation
Indices: 78756626--78756740 Score: 135
Period size: 40 Copynumber: 2.9 Consensus size: 39
78756616 CTCCAAGCAG
* *
78756626 AGGCACAAATGTGCAATCAAAGGCAT-AGAAGTGCAAAAG
1 AGGCACAAATGTGCAATCAGAGGCATCA-AAGTGCAAAAA
* * *
78756665 AGACACCAATGTG-TATACAGAGGCATCAAAGTGCAAACAA
1 AGGCACAAATGTGCAAT-CAGAGGCATCAAAGTGCAAA-AA
*
78756705 AGGCACGAATGTGCAATCAGAGGCATCAAAGTGCAA
1 AGGCACAAATGTGCAATCAGAGGCATCAAAGTGCAA
78756741 TCCCATTCAA
Statistics
Matches: 64, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
38 2 0.03
39 28 0.44
40 32 0.50
41 2 0.03
ACGTcount: A:0.43, C:0.18, G:0.24, T:0.14
Consensus pattern (39 bp):
AGGCACAAATGTGCAATCAGAGGCATCAAAGTGCAAAAA
Found at i:78761306 original size:22 final size:22
Alignment explanation
Indices: 78761274--78761323 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 22
78761264 TAAAATCAAA
* **
78761274 AAGCTCTTTTGAGTTGAACGGG
1 AAGCTCGTTTGAACTGAACGGG
78761296 AAGCTCGTTTGAACTGAACGGG
1 AAGCTCGTTTGAACTGAACGGG
78761318 AAGCTC
1 AAGCTC
78761324 ATACGATCTA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (22 bp):
AAGCTCGTTTGAACTGAACGGG
Found at i:78769559 original size:28 final size:28
Alignment explanation
Indices: 78769494--78769644 Score: 214
Period size: 28 Copynumber: 5.4 Consensus size: 28
78769484 GAGATTGGCG
* * * *
78769494 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
78769523 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
* * *
78769551 CTAAGTGTGTGAGCTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
78769579 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
78769607 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
78769634 CTAAGTGTGCG
1 CTAAGTGTGCG
78769645 GACTTAATAT
Statistics
Matches: 112, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
27 25 0.22
28 72 0.64
29 15 0.13
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:78777420 original size:28 final size:28
Alignment explanation
Indices: 78777380--78777533 Score: 256
Period size: 28 Copynumber: 5.5 Consensus size: 28
78777370 TAAATTGTAC
78777380 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
78777408 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
78777436 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
78777464 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
* *
78777492 AGCACTAAGTGTGCAAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
78777519 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
78777534 GACTTAATAT
Statistics
Matches: 120, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
27 23 0.19
28 97 0.81
ACGTcount: A:0.27, C:0.12, G:0.28, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATGT
Found at i:78780357 original size:14 final size:14
Alignment explanation
Indices: 78780338--78780369 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
78780328 TCCAATCACC
78780338 GGGCCAGTTTGGTT
1 GGGCCAGTTTGGTT
78780352 GGGCCAGTTTGGTT
1 GGGCCAGTTTGGTT
78780366 GGGC
1 GGGC
78780370 TAAATGACCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.06, C:0.16, G:0.47, T:0.31
Consensus pattern (14 bp):
GGGCCAGTTTGGTT
Found at i:78784189 original size:40 final size:40
Alignment explanation
Indices: 78784133--78784310 Score: 218
Period size: 40 Copynumber: 4.5 Consensus size: 40
78784123 CGGATGATAA
* *
78784133 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCCAGTTACTATA-T
* *
78784173 CCGGGCTAAGTACCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCCAGTTACTATAT
* * *
78784213 CCGGGCTAAGTCCCGAAAGAATTTGTGCCAGTTACTATGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCCAGTTACTATAT
* * *
78784253 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCCAGTTA-CTATAT
*
78784293 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
78784311 TACTTGGTTG
Statistics
Matches: 123, Mismatches: 13, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
39 17 0.14
40 105 0.85
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCCAGTTACTATAT
Found at i:78784269 original size:80 final size:80
Alignment explanation
Indices: 78784133--78784308 Score: 241
Period size: 80 Copynumber: 2.2 Consensus size: 80
78784123 CGGATGATAA
* * *
78784133 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTACCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAAGAATTTGTGCCAGTGACTAATTCCGGGCTAAGTACCGAAGGCATTTG
*
78784198 TGCGAGTTA-CTATAT
66 AGCGAG-TAGCTATAT
* *
78784213 CCGGGCTAAGTCCCGAAAGAATTTGTGCCAGTTACT-ATGTCCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAAGAATTTGTGCCAGTGACTAAT-TCCGGGCTAAGTACCGAAGGCATTT
*
78784277 GAGCGAGTAGCTATGT
65 GAGCGAGTAGCTATAT
*
78784293 CC-GGCTAAATCCCGAA
1 CCGGGCTAAGTCCCGAA
78784309 GGTACTTGGT
Statistics
Matches: 86, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
79 17 0.20
80 69 0.80
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAAGAATTTGTGCCAGTGACTAATTCCGGGCTAAGTACCGAAGGCATTTG
AGCGAGTAGCTATAT
Found at i:78787795 original size:44 final size:44
Alignment explanation
Indices: 78787666--78787763 Score: 178
Period size: 44 Copynumber: 2.2 Consensus size: 44
78787656 CATCAGAAAC
*
78787666 AGTATGACACATGAAGTGCCTCATCGACACAAAGTTGAAGTAAT
1 AGTACGACACATGAAGTGCCTCATCGACACAAAGTTGAAGTAAT
*
78787710 AGTACGACACATGAAGTGCCTCATCAACACAAAGTTGAAGTAAT
1 AGTACGACACATGAAGTGCCTCATCGACACAAAGTTGAAGTAAT
78787754 AGTACGACAC
1 AGTACGACAC
78787764 TATTCGTGCC
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 52 1.00
ACGTcount: A:0.40, C:0.20, G:0.19, T:0.20
Consensus pattern (44 bp):
AGTACGACACATGAAGTGCCTCATCGACACAAAGTTGAAGTAAT
Found at i:78788599 original size:4 final size:4
Alignment explanation
Indices: 78788590--78788627 Score: 51
Period size: 4 Copynumber: 9.8 Consensus size: 4
78788580 TTCCCTTTTC
* *
78788590 TCTT TCTT TCTT TCTT TCTC TCTT T-TT TGTT TCTT TCT
1 TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCT
78788628 CTGTTCTTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
3 3 0.10
4 27 0.90
ACGTcount: A:0.00, C:0.24, G:0.03, T:0.74
Consensus pattern (4 bp):
TCTT
Found at i:78788622 original size:19 final size:20
Alignment explanation
Indices: 78788584--78788629 Score: 69
Period size: 19 Copynumber: 2.4 Consensus size: 20
78788574 TTAAATTTCC
78788584 CTTT-TCTCTTTCTTTCTTT
1 CTTTCTCTCTTTCTTTCTTT
*
78788603 CTTTCTCTCTTT-TTTGTTT
1 CTTTCTCTCTTTCTTTCTTT
78788622 CTTTCTCT
1 CTTTCTCT
78788630 GTTCTTATTC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.00, C:0.26, G:0.02, T:0.72
Consensus pattern (20 bp):
CTTTCTCTCTTTCTTTCTTT
Found at i:78788668 original size:21 final size:22
Alignment explanation
Indices: 78788634--78788682 Score: 64
Period size: 21 Copynumber: 2.2 Consensus size: 22
78788624 TTCTCTGTTC
* *
78788634 TTATTCTTTTGTTTTATTTTAT
1 TTATTCTTATGTTTTATTATAT
78788656 TTATT-TTATGTTTTATTATAT
1 TTATTCTTATGTTTTATTATAT
78788677 TATATT
1 T-TATT
78788683 AATATCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 15 0.62
22 9 0.38
ACGTcount: A:0.20, C:0.02, G:0.04, T:0.73
Consensus pattern (22 bp):
TTATTCTTATGTTTTATTATAT
Found at i:78796494 original size:43 final size:43
Alignment explanation
Indices: 78796446--78796656 Score: 323
Period size: 43 Copynumber: 4.9 Consensus size: 43
78796436 ACTGGTATTA
* * * *
78796446 TATTCGGGCCTTTGTACCTAGCAGGGTTAATGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
78796489 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
* * *
78796532 TATTCCGGCCTTCGTTCCTAGCAGGCTTAGTGCCAGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
* *
78796575 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTT
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
* *
78796618 TATTCGGGCCTTCGTGCCTAGCAGGCATAATGCCGGTGA
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGA
78796657 AATGATATGT
Statistics
Matches: 153, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 153 1.00
ACGTcount: A:0.14, C:0.24, G:0.32, T:0.31
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
Found at i:78797047 original size:45 final size:44
Alignment explanation
Indices: 78796978--78797086 Score: 107
Period size: 45 Copynumber: 2.5 Consensus size: 44
78796968 TTGATTATTT
* * **
78796978 GGGCCTTTGAGCTTAGCAAACTATAACGCCAGTGAGA-T-ACTATCC
1 GGGCCTTCGAGCCTAGCAGGCTATAACGCCAGTGA-ACTGA-TAT-C
* *
78797023 GGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAACTGATATC
1 GGGCCTTCGAGCCTAGCAGGCTATAACGCCAGTGAACTGATATC
*
78797067 GGGCC-TCGAGCCTAACAGGC
1 GGGCCTTCGAGCCTAGCAGGC
78797087 GAAATGCCGA
Statistics
Matches: 55, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
43 14 0.25
44 7 0.13
45 33 0.60
46 1 0.02
ACGTcount: A:0.25, C:0.27, G:0.28, T:0.21
Consensus pattern (44 bp):
GGGCCTTCGAGCCTAGCAGGCTATAACGCCAGTGAACTGATATC
Found at i:78799994 original size:15 final size:15
Alignment explanation
Indices: 78799974--78800003 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
78799964 CTGTAAGCTA
78799974 TCATAGCTTAGTAAG
1 TCATAGCTTAGTAAG
78799989 TCATAGCTTAGTAAG
1 TCATAGCTTAGTAAG
78800004 CTATCACATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.13, G:0.20, T:0.33
Consensus pattern (15 bp):
TCATAGCTTAGTAAG
Found at i:78806260 original size:68 final size:65
Alignment explanation
Indices: 78806146--78806395 Score: 210
Period size: 68 Copynumber: 3.8 Consensus size: 65
78806136 CATATGGTAT
* * *
78806146 GTAGCTAGGTCACATGTGTAATACGGGATGTATACA--ATGTGTACAAGAGAGCTACGAGATATT
1 GTAGCTAGGTCACATGGGTGATAC--TATGTATACACCATGTGTACAAGAGAGCTACGAGATA-T
78806209 ATGA
63 A-GA
78806213 GGTAGCTAGGTCACATGGGTGATACTATGTATACACCATGTAG-ACAAGAGAGCTACGAG--ATA
1 -GTAGCTAGGTCACATGGGTGATACTATGTATACACCATGT-GTACAAGAGAGCTACGAGATATA
78806275 GA
64 GA
** * * * * * **
78806277 TGTAGCTAGGTTGCATGTGTCG-TTCCAGGTGAAGGACACCATGTAAACAAGAGAGCTACGAGAT
1 -GTAGCTAGGTCACATGGGT-GATACTA--TGTA-TACACCATGTGTACAAGAGAGCTACGAGAT
78806341 A-A-A
61 ATAGA
* * *
78806344 ATGGCTAGGTCACATGGGTGATACTATGTGTACACCATGTGTACAAGAGAGC
1 GTAGCTAGGTCACATGGGTGATACTATGTATACACCATGTGTACAAGAGAGC
78806396 CAACATTATG
Statistics
Matches: 147, Mismatches: 24, Indels: 27
0.74 0.12 0.14
Matches are distributed among these distances:
63 19 0.13
64 23 0.16
65 4 0.03
66 30 0.20
67 26 0.18
68 43 0.29
69 2 0.01
ACGTcount: A:0.33, C:0.15, G:0.28, T:0.24
Consensus pattern (65 bp):
GTAGCTAGGTCACATGGGTGATACTATGTATACACCATGTGTACAAGAGAGCTACGAGATATAGA
Found at i:78809642 original size:46 final size:46
Alignment explanation
Indices: 78809591--78809812 Score: 213
Period size: 47 Copynumber: 4.8 Consensus size: 46
78809581 ATGGTTGAGC
* *
78809591 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA-ATG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCAGTTA--GATGCAACAGG
* *
78809638 -TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAGATGTAACTAGG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCAGTTAGATGCAAC-AGG
* * * *
78809683 CATTCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTAACTAGG
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCAGTTAGATGCAAC-AGG
* *
78809730 CATCCGAACTCGTTGAATTGAGTCCGAGTTCAGTTATGGATGCAA-ACG
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCAGTTA--GATGCAACAGG
* * *
78809778 -CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTAG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCAGTTAG
78809813 GGGCGGGTTA
Statistics
Matches: 152, Mismatches: 16, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
43 6 0.04
44 1 0.01
45 4 0.03
46 59 0.39
47 72 0.47
48 5 0.03
50 5 0.03
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (46 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCAGTTAGATGCAACAGG
Found at i:78809709 original size:47 final size:47
Alignment explanation
Indices: 78809638--78809760 Score: 219
Period size: 47 Copynumber: 2.6 Consensus size: 47
78809628 GATGCAAATG
*
78809638 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
*
78809685 TTCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
*
78809732 TCCGAACTCGTTGAATTGAGTCCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
78809761 AGTTATGGAT
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 72 1.00
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.29
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
Found at i:78819248 original size:47 final size:47
Alignment explanation
Indices: 78819129--78819789 Score: 1022
Period size: 47 Copynumber: 14.1 Consensus size: 47
78819119 GAAATGATAG
78819129 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
78819178 T-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
78819224 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
78819271 TAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
78819318 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
78819365 TAGGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
78819412 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
78819459 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
78819506 T-AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
78819552 T-AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * *
78819598 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATGTGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
78819645 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
78819692 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * * * *
78819739 CAAGGCCGAGTGGCCAACGTAATGGATGTGGAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
78819786 TAAG
1 TAAG
78819790 TCCCGAAAGG
Statistics
Matches: 579, Mismatches: 31, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
46 102 0.18
47 442 0.76
48 34 0.06
49 1 0.00
ACGTcount: A:0.31, C:0.10, G:0.30, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:78819964 original size:37 final size:37
Alignment explanation
Indices: 78819908--78819983 Score: 116
Period size: 37 Copynumber: 2.1 Consensus size: 37
78819898 CCGAGCTCTA
* * *
78819908 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
78819945 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
78819982 AA
1 AA
78819984 TACTTCGTAA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.26
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:78823208 original size:43 final size:43
Alignment explanation
Indices: 78823142--78823254 Score: 160
Period size: 43 Copynumber: 2.6 Consensus size: 43
78823132 TCGTACAATC
*
78823142 CCAACGTCCCAGACGTGGTCTTACATGTAA-TCATATATCGATG
1 CCAACGTCCCAGACGTGGTCTTACACGTAACT-ATATATCGATG
*
78823185 CC-ACTGTCCCAGACAG-GGTCTTACACGTAACTATATATCTATG
1 CCAAC-GTCCCAGAC-GTGGTCTTACACGTAACTATATATCGATG
78823228 CCAACGTCCCAGACGTGGTCTTACACG
1 CCAACGTCCCAGACGTGGTCTTACACG
78823255 AGAACACATA
Statistics
Matches: 63, Mismatches: 2, Indels: 10
0.84 0.03 0.13
Matches are distributed among these distances:
42 3 0.05
43 56 0.89
44 4 0.06
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.26
Consensus pattern (43 bp):
CCAACGTCCCAGACGTGGTCTTACACGTAACTATATATCGATG
Found at i:78835680 original size:44 final size:43
Alignment explanation
Indices: 78835620--78835776 Score: 154
Period size: 44 Copynumber: 3.5 Consensus size: 43
78835610 TGCTGATGCA
**
78835620 TGTCCCAGACATGTCTTACACTAGCACAACTCTTAGCCGATGT
1 TGTCCCAGACACATCTTACACTAGCACAACTCTTAGCCGATGT
* * * * * *
78835663 GTGTCCTAGACACGTCTTACACTGGCTATCATCATC-GAGGCCGATGCA
1 -TGTCCCAGACACATCTTACACTAGC-A-CAAC-TCTTA-GCCGATG-T
* *
78835711 TGTCCCAGACATATCTTACACTAGTACAACTCTTAGCCGATGCT
1 TGTCCCAGACACATCTTACACTAGCACAACTCTTAGCCGATG-T
78835755 TGTCCCAGACACATCTTACACT
1 TGTCCCAGACACATCTTACACT
78835777 GGCTATCATC
Statistics
Matches: 92, Mismatches: 15, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
44 53 0.58
45 5 0.05
46 5 0.05
47 29 0.32
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.27
Consensus pattern (43 bp):
TGTCCCAGACACATCTTACACTAGCACAACTCTTAGCCGATGT
Found at i:78835720 original size:91 final size:91
Alignment explanation
Indices: 78835614--78835923 Score: 394
Period size: 91 Copynumber: 3.4 Consensus size: 91
78835604 TATACGTGCT
*
78835614 GATGCATGTCCCAGACATGTCTTACACTAGCACAACTCTTAGCCGATG-TGTGTCCTAGACACGT
1 GATGCATGTCCCAGACATGTCTTACACTAGCACAACTCTTAGCCGATGCT-TGTCCCAGACACGT
78835678 CTTACACTGGCTATCATCATCGAGGCC
65 CTTACACTGGCTATCATCATCGAGGCC
* * *
78835705 GATGCATGTCCCAGACATATCTTACACTAGTACAACTCTTAGCCGATGCTTGTCCCAGACACATC
1 GATGCATGTCCCAGACATGTCTTACACTAGCACAACTCTTAGCCGATGCTTGTCCCAGACACGTC
78835770 TTACACTGGCTATCATCATCGAGGCC
66 TTACACTGGCTATCATCATCGAGGCC
* * * * * *
78835796 GATGCATGTACCAGACATGTCTTACACTGGCAC-TCATCTCTACGCCAATGCCATGTCCCAGAAA
1 GATGCATGTCCCAGACATGTCTTACACTAGCACAAC-TCT-TA-GCCGATG-CTTGTCCCAGACA
* * * *
78835860 TGGTCTTATACTGGC-ACTCATAAT-GTGGCC
62 -CGTCTTACACTGGCTA-TCATCATCGAGGCC
*
78835890 GATGCATGTCCCAGACATGTCTTACACTGGCACA
1 GATGCATGTCCCAGACATGTCTTACACTAGCACA
78835924 CAAGAAATTC
Statistics
Matches: 193, Mismatches: 18, Indels: 12
0.87 0.08 0.05
Matches are distributed among these distances:
90 1 0.01
91 117 0.61
92 3 0.02
93 6 0.03
94 49 0.25
95 17 0.09
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (91 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCACAACTCTTAGCCGATGCTTGTCCCAGACACGTC
TTACACTGGCTATCATCATCGAGGCC
Found at i:78835721 original size:47 final size:47
Alignment explanation
Indices: 78835520--78835920 Score: 335
Period size: 47 Copynumber: 8.6 Consensus size: 47
78835510 TTGCCTATGC
* *
78835520 CATGTCCCAGACATGGTCTTACACTGGCTAGCATCATCGAGGCCAATG
1 CATGTCCCAGACAT-GTCTTACACTGGCTATCATCATCGAGGCCGATG
* * * * *
78835568 CCATGTCCCAGACATGGTCTTATACTAGCTCTCGTAT-ATACG-TGCTGATG
1 -CATGTCCCAGACAT-GTCTTACACTGGCTATC--ATCAT-CGAGGCCGATG
* * *
78835618 CATGTCCCAGACATGTCTTACACTAGC-A-CAAC-TCTTA-GCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTATCATCATC-GAGGCCGATG
** * *
78835662 TGTGTCCTAGACACGTCTTACACTGGCTATCATCATCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTATCATCATCGAGGCCGATG
* * * *
78835709 CATGTCCCAGACATATCTTACACTAG-TA-CAAC-TCTTA-GCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTATCATCATC-GAGGCCGATG
* **
78835753 CTTGTCCCAGACACATCTTACACTGGCTATCATCATCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTATCATCATCGAGGCCGATG
* * * *
78835800 CATGTACCAGACATGTCTTACACTGGC-ACTCATC-TCTACGCCAATG
1 CATGTCCCAGACATGTCTTACACTGGCTA-TCATCATCGAGGCCGATG
* * * *
78835846 CCATGTCCCAGAAATGGTCTTATACTGGC-ACTCATAAT-GTGGCCGATG
1 -CATGTCCCAGACAT-GTCTTACACTGGCTA-TCATCATCGAGGCCGATG
78835894 CATGTCCCAGACATGTCTTACACTGGC
1 CATGTCCCAGACATGTCTTACACTGGC
78835921 ACACAAGAAA
Statistics
Matches: 284, Mismatches: 49, Indels: 41
0.76 0.13 0.11
Matches are distributed among these distances:
43 1 0.00
44 62 0.22
45 7 0.02
46 33 0.12
47 91 0.32
48 36 0.13
49 43 0.15
50 7 0.02
51 4 0.01
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTGGCTATCATCATCGAGGCCGATG
Found at i:78840554 original size:14 final size:14
Alignment explanation
Indices: 78840537--78840576 Score: 71
Period size: 14 Copynumber: 2.9 Consensus size: 14
78840527 TTAACCATTT
*
78840537 ATAATGACCTTAGC
1 ATAATGACATTAGC
78840551 ATAATGACATTAGC
1 ATAATGACATTAGC
78840565 ATAATGACATTA
1 ATAATGACATTA
78840577 AGTTCTAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.42, C:0.15, G:0.12, T:0.30
Consensus pattern (14 bp):
ATAATGACATTAGC
Found at i:78843099 original size:21 final size:21
Alignment explanation
Indices: 78843074--78843113 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
78843064 CGCACGAGCA
78843074 TGTGTCTAGACCGTGTGTGTG
1 TGTGTCTAGACCGTGTGTGTG
78843095 TGTGTCTAGACCGTGTGTG
1 TGTGTCTAGACCGTGTGTG
78843114 ACACACGGCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.10, C:0.15, G:0.38, T:0.38
Consensus pattern (21 bp):
TGTGTCTAGACCGTGTGTGTG
Found at i:78860579 original size:16 final size:16
Alignment explanation
Indices: 78860555--78860587 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
78860545 CAGAGTTTTG
78860555 AGAAACTAAAGGCATT
1 AGAAACTAAAGGCATT
*
78860571 AGAATCTAAAGGCATT
1 AGAAACTAAAGGCATT
78860587 A
1 A
78860588 TTGACTGAGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.48, C:0.12, G:0.18, T:0.21
Consensus pattern (16 bp):
AGAAACTAAAGGCATT
Found at i:78864161 original size:27 final size:27
Alignment explanation
Indices: 78864130--78864307 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
78864120 TAAATTGTAC
78864130 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
78864157 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
78864183 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
78864211 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
78864239 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
78864266 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
78864293 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
78864308 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:78864244 original size:82 final size:81
Alignment explanation
Indices: 78864131--78864286 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
78864121 AAATTGTACA
* *
78864131 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
78864195 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
78864212 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
78864277 TGCGAGTTGA
65 TGCGAATTGA
78864287 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:78864298 original size:82 final size:81
Alignment explanation
Indices: 78864127--78864307 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
78864117 GATTAAATTG
* *
78864127 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
78864192 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
78864208 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
78864272 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
78864290 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
78864308 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:78872350 original size:27 final size:27
Alignment explanation
Indices: 78872319--78872496 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
78872309 TAAATTGTAC
78872319 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
78872346 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
78872372 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
78872400 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
78872428 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
78872455 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
78872482 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
78872497 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:78872433 original size:82 final size:81
Alignment explanation
Indices: 78872320--78872475 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
78872310 AAATTGTACA
* *
78872320 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
78872384 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
78872401 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
78872466 TGCGAGTTGA
65 TGCGAATTGA
78872476 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:78872487 original size:82 final size:81
Alignment explanation
Indices: 78872316--78872496 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
78872306 GATTAAATTG
* *
78872316 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
78872381 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
78872397 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
78872461 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
78872479 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
78872497 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:78882124 original size:6 final size:6
Alignment explanation
Indices: 78882115--78882149 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
78882105 AAATAACAAT
* *
78882115 AATAAC AATAAT GATAAC AATAAC AATAAC AATAA
1 AATAAC AATAAC AATAAC AATAAC AATAAC AATAA
78882150 AACAACACAC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.66, C:0.11, G:0.03, T:0.20
Consensus pattern (6 bp):
AATAAC
Found at i:78883367 original size:45 final size:45
Alignment explanation
Indices: 78883302--78883828 Score: 332
Period size: 45 Copynumber: 11.7 Consensus size: 45
78883292 GATGCTTCGA
* * * *
78883302 TCTGCTCCAATGTAATTTCAGGGAGATAAGATCTGCTGTCTTCAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGCTATCTTCAG
* * *
78883347 TCTGCTCCACTGCAACTTCAGGGAGGTAAGA-CTTACTAT-TTCAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATC-TGCTATCTTCAG
* * * * ***
78883391 CCTGCTCCACTGTAACTTCAGAGAGATAAAGAT-TG-TATATTTTTT
1 TCTGCTCCACTGCAACTTCAGGGAGAT-AAGATCTGCTAT-CTTCAG
* * * * **
78883436 TCCTGCTCTACTGCAACTTTAGAGAGATAAGGAT-T-ATGGCTTC-G
1 T-CTGCTCCACTGCAACTTCAGGGAGATAA-GATCTGCTATCTTCAG
* *
78883480 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTTAG
1 -TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGCTATCTTCAG
* * *
78883526 TCTGTTGCACTGAAACTTCAGGGAGATAAGA-CTTGCTATCTTCAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATC-TGCTATCTTCAG
* *
78883571 TCTGCTCCACTGCAACTTTAGGGAGATAAGA-CTTGCTA-CTTCAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATC-TGCTATCTTCAG
* * * * * * * *
78883615 CCTACTCTACTGCAACTTTAGAGAGATAAGGTTTGCTA---TGA-
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGCTATCTTCAG
* * ** *
78883656 TCTGCTCTACTGCAACTTCAGAGAGATAAGATCTATTTATTTATAACTTCAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATC----T-GCTAT--CTTCAG
* * *
78883708 TCTGTTCCACTGCAACTTCAGGGAAATAAGAT-TCGCTATCTTTAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCT-GCTATCTTCAG
* * * *
78883753 TCTGCTCCACTGCAATTTTAGGGAGATAAGA-CTTG-TAGCTTCAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATC-TGCTATCTTCAG
* * *
78883797 TCTTCTCCACTACAACTTCAAGGAGATAAGAT
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGAT
78883829 TCGCTATGAT
Statistics
Matches: 377, Mismatches: 77, Indels: 56
0.74 0.15 0.11
Matches are distributed among these distances:
41 28 0.07
42 2 0.01
43 6 0.02
44 123 0.33
45 152 0.40
46 32 0.08
47 4 0.01
51 2 0.01
52 28 0.07
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.32
Consensus pattern (45 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGCTATCTTCAG
Found at i:78883575 original size:90 final size:88
Alignment explanation
Indices: 78883302--78883835 Score: 361
Period size: 89 Copynumber: 5.9 Consensus size: 88
78883292 GATGCTTCGA
* * * * * *
78883302 TCTGCTCCAATGTAATTTCAGGGAGATAAGATCTGCTGTCTTCAGTCTGCTCCACTGCAACTTCA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCAATCTGCT-CACTGCAACTTCA
* * *
78883367 GGGAGGTAAGACTTACTAT-TTCAA
65 GGGAGATAAGA-TTGCTATCTTCAG
* * * * ***
78883391 CCTGCTCCACTGTAACTTCAGAGAGATAAAGA-TTG-TATATTTTTTTCCTGCTCTACTGCAACT
1 TCTGCTCCACTGCAACTTCAGGGAGAT-AAGATTTGCTAT-CTTCAAT-CTGCTC-ACTGCAACT
* * * **
78883454 TTAGAGAGATAAGGATT-ATGGCTTC-G
62 TCAGGGAGATAA-GATTGCTATCTTCAG
* * * *
78883480 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTTAGTCTGTTGCACTGAAACTTC
1 -TCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCAATCTGCT-CACTGCAACTTC
78883545 AGGGAGATAAGACTTGCTATCTTCAG
64 AGGGAGATAAGA-TTGCTATCTTCAG
* * * * *
78883571 TCTGCTCCACTGCAACTTTAGGGAGATAAGACTTGCTA-CTTCAACCTACTCTACTGCAACTTTA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCAATCTGCTC-ACTGCAACTTCA
* * *
78883635 GAGAGATAAGGTTTGCTA---TGA-
65 GGGAGATAA-GATTGCTATCTTCAG
* * ** *
78883656 TCTGCTCTACTGCAACTTCAGAGAGATAAGATCTATTTATTTATAACTTCAATCTGTTCCACTGC
1 TCTGCTCCACTGCAACTTCAGGGAGATAAG----ATTT-GCTAT--CTTCAATCTGCT-CACTGC
* *
78883721 AACTTCAGGGAAATAAGATTCGCTATCTTTAG
58 AACTTCAGGGAGATAAGATT-GCTATCTTCAG
* * * * * *
78883753 TCTGCTCCACTGCAATTTTAGGGAGATAAGACTTG-TAGCTTCAATCTTCTCCACTACAACTTCA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCAATCTGCT-CACTGCAACTTCA
*
78883817 AGGAGATAAGATTCGCTAT
65 GGGAGATAAGATT-GCTAT
78883836 GATGTGTTAA
Statistics
Matches: 348, Mismatches: 68, Indels: 58
0.73 0.14 0.12
Matches are distributed among these distances:
85 27 0.08
86 2 0.01
88 5 0.01
89 132 0.38
90 108 0.31
91 8 0.02
92 3 0.01
93 34 0.10
94 1 0.00
96 2 0.01
97 26 0.07
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (88 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCAATCTGCTCACTGCAACTTCAG
GGAGATAAGATTGCTATCTTCAG
Found at i:78883576 original size:134 final size:134
Alignment explanation
Indices: 78883347--78883600 Score: 316
Period size: 134 Copynumber: 1.9 Consensus size: 134
78883337 CTGTCTTCAG
* *
78883347 TCTGCTCCACTGCAACTTCAGGGAGGTAAGACTTACTATTTCAACCTGCTCCACTGTAACTTCAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTACTATTTCAACCTGCTCCACTGAAACTTCAG
* *** *
78883412 AGAGATAAAGATTGTATATTTTTTTCCTGCTCTACTGCAACTTTAGAGAGATAAGGATTATGGCT
66 AGAGATAAAGATTGTATACTTCAGTCCTGCTCCACTGCAACTTTAGAGAGATAAGGATTATGGCT
78883477 TCGA
131 TCGA
* * * ** * *
78883481 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTTAGTCTGTTGCACTGAAACTTCA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTACTAT-TTCAACCTGCTCCACTGAAACTTCA
* *
78883546 GGGAGAT-AAGACTTGCTAT-CTTCAGT-CTGCTCCACTGCAACTTTAGGGAGATAAG
65 GAGAGATAAAGA-TTG-TATACTTCAGTCCTGCTCCACTGCAACTTTAGAGAGATAAG
78883601 ACTTGCTACT
Statistics
Matches: 101, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
134 67 0.66
135 31 0.31
136 3 0.03
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (134 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTACTATTTCAACCTGCTCCACTGAAACTTCAG
AGAGATAAAGATTGTATACTTCAGTCCTGCTCCACTGCAACTTTAGAGAGATAAGGATTATGGCT
TCGA
Found at i:78883763 original size:182 final size:175
Alignment explanation
Indices: 78883300--78883838 Score: 514
Period size: 182 Copynumber: 3.0 Consensus size: 175
78883290 TTGATGCTTC
* * * * * * * * *
78883300 GATCTGCTCCAATGTAATTTCAGGGAGATAAGATCTGCTGTCTTCAGTCTGCTCCACTGCAACTT
1 GATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTGTTCCACTGAAACTT
** * ** * * *
78883365 CAGGGAGGTAAGACTTACTAT-TTCAACCTGCTCCACTGTAACTTCAGAGAGATAAAGA-TTGTA
66 CAGGGAAATAAGACTTGCTATCTTCAGTCTGCTCCACTGCAACTTTAGGGAGAT-AAGACTTG--
** *** *
78883428 TATTTTTTTCCTGCTCTACTGCAACTTTAGAGAGATAAGGATTATGGCT-T
128 TAGCTTCAACCTACTCTACTGCAACTTTAGAGAGATAAGG-TT-T-GCTAT
* * * *
78883478 CGATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTTAGTCTGTTGCACTGAAACT
1 -GATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTGTTCCACTGAAACT
*
78883543 TCAGGGAGATAAGACTTGCTATCTTCAGTCTGCTCCACTGCAACTTTAGGGAGATAAGACTTGCT
65 TCAGGGAAATAAGACTTGCTATCTTCAGTCTGCTCCACTGCAACTTTAGGGAGATAAGACTTG-T
78883608 A-CTTCAACCTACTCTACTGCAACTTTAGAGAGATAAGGTTTGCTAT
129 AGCTTCAACCTACTCTACTGCAACTTTAGAGAGATAAGGTTTGCTAT
* **
78883654 GATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTATTTATTTATAACTTCAATCTGTTCCACT
1 GATCTGCTCCACTGCAACTTCAGAGAGATAAG----ATTT-GCTAT--CTTCAATCTGTTCCACT
* * *
78883719 GCAACTTCAGGGAAATAAGA-TTCGCTATCTTTAGTCTGCTCCACTGCAATTTTAGGGAGATAAG
59 GAAACTTCAGGGAAATAAGACTT-GCTATCTTCAGTCTGCTCCACTGCAACTTTAGGGAGATAAG
* * * * * * *
78883783 ACTTGTAGCTTCAATCTTCTCCACTACAACTTCA-AGGAGATAAGATTCGCTAT
123 ACTTGTAGCTTCAACCTACTCTACTGCAACTTTAGA-GAGATAAGGTTTGCTAT
78883836 GAT
1 GAT
78883839 GTGTTAATCC
Statistics
Matches: 307, Mismatches: 40, Indels: 23
0.83 0.11 0.06
Matches are distributed among these distances:
175 33 0.11
176 2 0.01
177 2 0.01
178 32 0.10
179 85 0.28
180 33 0.11
181 5 0.02
182 115 0.37
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (175 bp):
GATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTGTTCCACTGAAACTT
CAGGGAAATAAGACTTGCTATCTTCAGTCTGCTCCACTGCAACTTTAGGGAGATAAGACTTGTAG
CTTCAACCTACTCTACTGCAACTTTAGAGAGATAAGGTTTGCTAT
Found at i:78896108 original size:9 final size:9
Alignment explanation
Indices: 78896094--78896136 Score: 52
Period size: 9 Copynumber: 4.9 Consensus size: 9
78896084 AAAGAAAATA
78896094 AATAACAAT
1 AATAACAAT
78896103 AATAACAAT
1 AATAACAAT
* * *
78896112 AATGATAAC
1 AATAACAAT
78896121 AATAACAAT
1 AATAACAAT
78896130 AA-AACAA
1 AATAACAA
78896137 CACACTAAAA
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
8 5 0.18
9 23 0.82
ACGTcount: A:0.67, C:0.12, G:0.02, T:0.19
Consensus pattern (9 bp):
AATAACAAT
Found at i:78909110 original size:55 final size:52
Alignment explanation
Indices: 78908988--78909189 Score: 190
Period size: 53 Copynumber: 3.8 Consensus size: 52
78908978 TTTAAGGATA
* *
78908988 CCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGCAAGGAAAT
1 CCATGTAAGACCATGCCAAGACATGGCATTGGTAAG-TTTATAAGGCAA--AAAT
* * * *
78909043 -CATGTAAGACCATGTCAAGACATGGCATTGATAAACTATTATAAGGCAAATAT
1 CCATGTAAGACCATGCCAAGACATGGCATTGGT-AAGT-TTATAAGGCAAAAAT
* * * * * **
78909096 CCCATGTAAGACCATGCCAAGGCAAGGCAATGGTGAGTTCATAAGGCAAGGAT
1 -CCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTATAAGGCAAAAAT
* * *
78909149 ACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTTA
1 -CCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTA
78909190 AAAAGGAAAG
Statistics
Matches: 120, Mismatches: 23, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
53 49 0.41
54 32 0.27
55 39 0.32
ACGTcount: A:0.37, C:0.18, G:0.23, T:0.22
Consensus pattern (52 bp):
CCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTATAAGGCAAAAAT
Found at i:78910518 original size:23 final size:23
Alignment explanation
Indices: 78910492--78910612 Score: 199
Period size: 23 Copynumber: 5.3 Consensus size: 23
78910482 ATAAGTGCCA
78910492 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
78910515 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
78910538 CACTG-GATGTAGCCAAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
78910560 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
78910583 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
78910606 CACTGAT
1 CACTGAT
78910613 CAATAACACT
Statistics
Matches: 92, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
22 20 0.22
23 72 0.78
ACGTcount: A:0.32, C:0.26, G:0.21, T:0.20
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:78910557 original size:45 final size:46
Alignment explanation
Indices: 78910492--78910612 Score: 199
Period size: 45 Copynumber: 2.7 Consensus size: 46
78910482 ATAAGTGCCA
*
78910492 CACTGATATGTAGCCGAAGCTACCACTGATATGTAGCCGAAGCTAC
1 CACTGAAATGTAGCCGAAGCTACCACTGATATGTAGCCGAAGCTAC
* * *
78910538 CACTG-GATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTAC
1 CACTGAAATGTAGCCGAAGCTACCACTGATATGTAGCCGAAGCTAC
78910583 CACTGAAATGTAGCCGAAGCTACCACTGAT
1 CACTGAAATGTAGCCGAAGCTACCACTGAT
78910613 CAATAACACT
Statistics
Matches: 68, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
45 42 0.62
46 26 0.38
ACGTcount: A:0.32, C:0.26, G:0.21, T:0.20
Consensus pattern (46 bp):
CACTGAAATGTAGCCGAAGCTACCACTGATATGTAGCCGAAGCTAC
Found at i:78917977 original size:23 final size:21
Alignment explanation
Indices: 78917876--78917978 Score: 146
Period size: 23 Copynumber: 5.1 Consensus size: 21
78917866 CCACACTGAT
78917876 ATGTAGCCGAAGCTACCACTG
1 ATGTAGCCGAAGCTACCACTG
78917897 ATGTAGCC---GCTACCACT-
1 ATGTAGCCGAAGCTACCACTG
78917914 ATGTAGCC-AAGCTA-CACTG
1 ATGTAGCCGAAGCTACCACTG
78917933 ATGTAGCCGAAGCTACCACTG
1 ATGTAGCCGAAGCTACCACTG
78917954 AAATGTAGCCGAAGCTACCACTG
1 --ATGTAGCCGAAGCTACCACTG
78917977 AT
1 AT
78917979 CAATAACACT
Statistics
Matches: 75, Mismatches: 0, Indels: 14
0.84 0.00 0.16
Matches are distributed among these distances:
17 8 0.11
18 13 0.17
19 12 0.16
20 6 0.08
21 15 0.20
23 21 0.28
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.20
Consensus pattern (21 bp):
ATGTAGCCGAAGCTACCACTG
Found at i:78925983 original size:23 final size:23
Alignment explanation
Indices: 78925957--78926077 Score: 199
Period size: 23 Copynumber: 5.3 Consensus size: 23
78925947 ATAAGTGCCA
78925957 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
78925980 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
78926003 CACTG-GATGTAGCCAAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
78926025 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
78926048 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
78926071 CACTGAT
1 CACTGAT
78926078 CAATAACACT
Statistics
Matches: 92, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
22 20 0.22
23 72 0.78
ACGTcount: A:0.32, C:0.26, G:0.21, T:0.20
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:78926022 original size:45 final size:46
Alignment explanation
Indices: 78925957--78926077 Score: 199
Period size: 45 Copynumber: 2.7 Consensus size: 46
78925947 ATAAGTGCCA
*
78925957 CACTGATATGTAGCCGAAGCTACCACTGATATGTAGCCGAAGCTAC
1 CACTGAAATGTAGCCGAAGCTACCACTGATATGTAGCCGAAGCTAC
* * *
78926003 CACTG-GATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTAC
1 CACTGAAATGTAGCCGAAGCTACCACTGATATGTAGCCGAAGCTAC
78926048 CACTGAAATGTAGCCGAAGCTACCACTGAT
1 CACTGAAATGTAGCCGAAGCTACCACTGAT
78926078 CAATAACACT
Statistics
Matches: 68, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
45 42 0.62
46 26 0.38
ACGTcount: A:0.32, C:0.26, G:0.21, T:0.20
Consensus pattern (46 bp):
CACTGAAATGTAGCCGAAGCTACCACTGATATGTAGCCGAAGCTAC
Found at i:78933967 original size:12 final size:12
Alignment explanation
Indices: 78933950--78933975 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
78933940 TCTCCGATCG
78933950 TTACTTCACTGC
1 TTACTTCACTGC
78933962 TTACTTCACTGC
1 TTACTTCACTGC
78933974 TT
1 TT
78933976 GATTGCATGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.31, G:0.08, T:0.46
Consensus pattern (12 bp):
TTACTTCACTGC
Found at i:78934776 original size:15 final size:16
Alignment explanation
Indices: 78934745--78934783 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
78934735 TTACCTTAAA
78934745 AAAAAATCCACCTATT
1 AAAAAATCCACCTATT
*
78934761 AAAAAATTCACC-ATT
1 AAAAAATCCACCTATT
*
78934776 AAACAATC
1 AAAAAATC
78934784 ACATAAAATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
15 9 0.45
16 11 0.55
ACGTcount: A:0.54, C:0.23, G:0.00, T:0.23
Consensus pattern (16 bp):
AAAAAATCCACCTATT
Found at i:78935116 original size:18 final size:18
Alignment explanation
Indices: 78935095--78935131 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
78935085 AAAAAATATA
78935095 AAATTCCTAAAACTAAAT
1 AAATTCCTAAAACTAAAT
* *
78935113 AAATTTCTAAAACTTAAT
1 AAATTCCTAAAACTAAAT
78935131 A
1 A
78935132 GAAAGTTATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.54, C:0.14, G:0.00, T:0.32
Consensus pattern (18 bp):
AAATTCCTAAAACTAAAT
Found at i:78935352 original size:11 final size:10
Alignment explanation
Indices: 78935276--78935350 Score: 70
Period size: 10 Copynumber: 7.7 Consensus size: 10
78935266 ATTCTAGTTG
78935276 TTTTTAATAA
1 TTTTTAATAA
78935286 TTTTTAAT--
1 TTTTTAATAA
78935294 TTTTTAA-ATA
1 TTTTTAATA-A
78935304 TTTTT-ATAA
1 TTTTTAATAA
*
78935313 CTTATT-ATAA
1 -TTTTTAATAA
*
78935323 TTCTTAATAA
1 TTTTTAATAA
78935333 TTTTTAAATAA
1 TTTTT-AATAA
78935344 TTTTTAA
1 TTTTTAA
78935351 ATTTTGGAAA
Statistics
Matches: 55, Mismatches: 3, Indels: 14
0.76 0.04 0.19
Matches are distributed among these distances:
8 7 0.13
9 6 0.11
10 32 0.58
11 10 0.18
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (10 bp):
TTTTTAATAA
Found at i:78935368 original size:47 final size:47
Alignment explanation
Indices: 78935279--78935371 Score: 111
Period size: 47 Copynumber: 2.0 Consensus size: 47
78935269 CTAGTTGTTT
**
78935279 TTAATAATTTTTAATTTTTTAAATATTTTTATAACTTATTATAATTC
1 TTAATAATTTTTAATTTTTTAAATATTTGGATAACTTATTATAATTC
*
78935326 TTAATAATTTTTAAATAATTTTTAAAT-TTTGGA-AA-TTTTTATAATT
1 TTAATAATTTTT-AAT--TTTTTAAATATTTGGATAACTTATTATAATT
78935372 ATTTAGAAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
47 22 0.55
48 5 0.12
49 4 0.10
50 9 0.22
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (47 bp):
TTAATAATTTTTAATTTTTTAAATATTTGGATAACTTATTATAATTC
Found at i:78935376 original size:10 final size:9
Alignment explanation
Indices: 78935276--78935376 Score: 64
Period size: 10 Copynumber: 10.7 Consensus size: 9
78935266 ATTCTAGTTG
78935276 TTTTTAATAA
1 TTTTT-ATAA
*
78935286 TTTTTA-AT
1 TTTTTATAA
*
78935294 TTTTTAAATA
1 TTTTTATA-A
78935304 TTTTTATAA
1 TTTTTATAA
*
78935313 CTTATTATAA
1 -TTTTTATAA
*
78935323 TTCTTAATAA
1 TT-TTTATAA
78935333 TTTTTAAATAA
1 TTTTT--ATAA
78935344 TTTTTA-AA
1 TTTTTATAA
*
78935352 TTTTGGA-AA
1 TTTT-TATAA
78935361 TTTTTATAA
1 TTTTTATAA
78935370 TTATTTA
1 TT-TTTA
78935377 GAAAACCATG
Statistics
Matches: 73, Mismatches: 9, Indels: 18
0.73 0.09 0.18
Matches are distributed among these distances:
8 14 0.19
9 19 0.26
10 31 0.42
11 9 0.12
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.59
Consensus pattern (9 bp):
TTTTTATAA
Found at i:78940978 original size:26 final size:26
Alignment explanation
Indices: 78940937--78941005 Score: 104
Period size: 26 Copynumber: 2.7 Consensus size: 26
78940927 CCCAGTTTCA
78940937 CCCTAGTAAAATTTTGATAATTTTAC
1 CCCTAGTAAAATTTTGATAATTTTAC
* *
78940963 TCCC-GGTAAAATTTTGATGATTTTAC
1 -CCCTAGTAAAATTTTGATAATTTTAC
78940989 CCCTAGTAAAATTTTGA
1 CCCTAGTAAAATTTTGA
78941006 GAAAATTTGT
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
25 3 0.08
26 32 0.84
27 3 0.08
ACGTcount: A:0.32, C:0.16, G:0.12, T:0.41
Consensus pattern (26 bp):
CCCTAGTAAAATTTTGATAATTTTAC
Found at i:78944649 original size:27 final size:27
Alignment explanation
Indices: 78944609--78944660 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
78944599 GAATAATCCC
*
78944609 GGTCTCAATGATAACCCAAATGGTCCT
1 GGTCTCAATAATAACCCAAATGGTCCT
* * *
78944636 GGTCTTAATAATAATCTAAATGGTC
1 GGTCTCAATAATAACCCAAATGGTC
78944661 AGGATGTTAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (27 bp):
GGTCTCAATAATAACCCAAATGGTCCT
Found at i:78951496 original size:3 final size:3
Alignment explanation
Indices: 78951483--78951528 Score: 67
Period size: 3 Copynumber: 15.7 Consensus size: 3
78951473 AACTTATTTC
* *
78951483 ATA AT- ATA ATA ATA ATA ATA ATA ATA ATA ACA ACA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
78951529 TTAATATTAA
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
2 2 0.05
3 38 0.95
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:78962475 original size:13 final size:13
Alignment explanation
Indices: 78962457--78962481 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
78962447 GGTTTGTTTA
78962457 TTAAACTAATTAT
1 TTAAACTAATTAT
78962470 TTAAACTAATTA
1 TTAAACTAATTA
78962482 ACTAATTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTAAACTAATTAT
Found at i:78969561 original size:33 final size:33
Alignment explanation
Indices: 78969514--78969586 Score: 101
Period size: 33 Copynumber: 2.2 Consensus size: 33
78969504 AACAGTGTAT
* * * *
78969514 ACAGTAACGGTCTGGGCCTGAGCCCTATTCATTA
1 ACAGT-ACAGTCTGGGCCTAAGCCCTATGCAGTA
78969548 ACAGTACAGTCTGGGCCTAAGCCCTATGCAGTA
1 ACAGTACAGTCTGGGCCTAAGCCCTATGCAGTA
78969581 ACAGTA
1 ACAGTA
78969587 TGGGCCTATG
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
33 30 0.86
34 5 0.14
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.23
Consensus pattern (33 bp):
ACAGTACAGTCTGGGCCTAAGCCCTATGCAGTA
Found at i:78969784 original size:23 final size:23
Alignment explanation
Indices: 78969727--78969784 Score: 89
Period size: 23 Copynumber: 2.5 Consensus size: 23
78969717 ATCGCAGCGT
* *
78969727 AGCTGCTAATAATAACGCAGCAA
1 AGCTGCTAATAGTAACACAGCAA
*
78969750 AGCTACTAATAGTAACACAGCAA
1 AGCTGCTAATAGTAACACAGCAA
78969773 AGCTGCTAATAG
1 AGCTGCTAATAG
78969785 CGGTAAACAT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.43, C:0.21, G:0.17, T:0.19
Consensus pattern (23 bp):
AGCTGCTAATAGTAACACAGCAA
Found at i:78971912 original size:16 final size:18
Alignment explanation
Indices: 78971876--78971913 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
78971866 GTTAGTTTAT
*
78971876 ACTGAAAACTGTAGTTAA
1 ACTGAAAACTATAGTTAA
78971894 ACTG-AAACTATAG-TAA
1 ACTGAAAACTATAGTTAA
78971910 ACTG
1 ACTG
78971914 CTAGAGACTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 7 0.37
17 8 0.42
18 4 0.21
ACGTcount: A:0.45, C:0.13, G:0.16, T:0.26
Consensus pattern (18 bp):
ACTGAAAACTATAGTTAA
Found at i:78982894 original size:19 final size:20
Alignment explanation
Indices: 78982870--78982907 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
78982860 GGTACCACCA
78982870 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
78982889 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
78982908 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:78983247 original size:93 final size:93
Alignment explanation
Indices: 78983137--78983307 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
78983127 GCCCCTATGT
* *
78983137 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
*
78983202 TGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * * *
78983230 GAACTCGGACTCAACTCAATGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
78983295 CGAGTTCGGATGC
66 CGAGTTCGGATGC
78983308 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:78983300 original size:46 final size:46
Alignment explanation
Indices: 78983135--78983304 Score: 184
Period size: 46 Copynumber: 3.7 Consensus size: 46
78983125 CCGCCCCTAT
* * * *
78983135 GTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAA
1 GTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAA
* * * * *
78983181 ATGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTTACAT-C-TCA
1 GTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCATAA
* *
78983229 -CGAACTCGGACTCAACTCAATGAGTTCGGACATTTGCATCCATAA
1 GTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAA
78983274 GTGAACTCGGACTCAACTCAACGAGTTCGGA
1 GTGAACTCGGACTCAACTCAACGAGTTCGGA
78983305 TGCTCAACCA
Statistics
Matches: 102, Mismatches: 15, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 55 0.54
47 29 0.28
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
GTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAA
Found at i:78983323 original size:46 final size:46
Alignment explanation
Indices: 78983130--78983323 Score: 118
Period size: 46 Copynumber: 4.2 Consensus size: 46
78983120 GTAACCCGCC
* ** * *
78983130 CCTATGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTC--GCAT
1 CCTA-GTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT
* *
78983175 CCATAAATGAACTCGGACTCAACTCAATGAGTTCGGATGC-CTAGTTA-CAT
1 CC-T-AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCAT
* * * *
78983225 -CTCA-CGAACTCGGACTCAACTCAATGAGTTCGGACAT-TTGCATCCAT
1 CCT-AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCT-CAACCAT
*
78983272 --AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT
1 CCTAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT
78983316 CCTAGTGA
1 CCTAGTGA
78983324 CATGTCACTT
Statistics
Matches: 116, Mismatches: 16, Indels: 33
0.70 0.10 0.20
Matches are distributed among these distances:
44 8 0.07
45 5 0.04
46 61 0.53
47 32 0.28
48 2 0.02
49 4 0.03
50 4 0.03
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (46 bp):
CCTAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT
Found at i:78986521 original size:47 final size:47
Alignment explanation
Indices: 78986323--78986578 Score: 211
Period size: 47 Copynumber: 5.5 Consensus size: 47
78986313 ATTGACGGTT
** *
78986323 AAGGATACCATGTAAGACCATGTCAAG-ACATGGCA-TTGGTAAGTC
1 AAGGATACCATGTAAGACCATGTTTAGAACATGGCATTTGGTAAGAC
* * ** * * * * *
78986368 AAGGATCCCGTGTAAGACCATGTCAAG-ACATGGTA-TCGGCATTGATT
1 AAGGATACCATGTAAGACCATGTTTAGAACATGGCATTTGGTA-AGA-C
** ** **
78986415 AAGGACT-CCATGTAAGACCACATAAAG-ATGTGGCA-TTGGCACTAAGAC
1 AAGGA-TACCATGTAAGACCATGTTTAGAACATGGCATTTGG---TAAGAC
*
78986463 AAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGAC
1 AAGGATACCATGTAAGACCATGTTTAGAACATGGCATTTGGTAAGAC
* *
78986510 AAGGATGCCATGTAAGACCATGTTTAGAACATGGCATTTGGTAAGAT
1 AAGGATACCATGTAAGACCATGTTTAGAACATGGCATTTGGTAAGAC
*
78986557 AAGGATATCATGTAAGACCATG
1 AAGGATACCATGTAAGACCATG
78986579 CCAAGGCATG
Statistics
Matches: 171, Mismatches: 31, Indels: 16
0.78 0.14 0.07
Matches are distributed among these distances:
45 36 0.21
46 1 0.01
47 100 0.58
48 21 0.12
49 8 0.05
50 5 0.03
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.24
Consensus pattern (47 bp):
AAGGATACCATGTAAGACCATGTTTAGAACATGGCATTTGGTAAGAC
Found at i:78986762 original size:108 final size:109
Alignment explanation
Indices: 78986565--78986763 Score: 319
Period size: 108 Copynumber: 1.8 Consensus size: 109
78986555 ATAAGGATAT
* *
78986565 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGGCC
1 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACCATGTAAGACC
* *
78986630 ATGTCAATACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
66 ATGTCAAGACATGGCAATGATGAGTTACTATAAGGCAAAGGTCC
* * *
78986674 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAGGATACCATGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACCATGTAAGACC
*
78986738 ATGTCAAGACATGGCAATGGTGAGTT
66 ATGTCAAGACATGGCAATGATGAGTT
78986764 CAAAAAGAAA
Statistics
Matches: 82, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
108 46 0.56
109 36 0.44
ACGTcount: A:0.34, C:0.18, G:0.26, T:0.23
Consensus pattern (109 bp):
CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACCATGTAAGACC
ATGTCAAGACATGGCAATGATGAGTTACTATAAGGCAAAGGTCC
Found at i:78986765 original size:53 final size:54
Alignment explanation
Indices: 78986557--78986764 Score: 258
Period size: 53 Copynumber: 3.9 Consensus size: 54
78986547 TTGGTAAGAT
* * *
78986557 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* * * * *
78986611 AAGGAAATCATGTAAGGCCATGTCAATACATGGCATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGC
* * *
78986666 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* * *
78986719 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTGAGTTC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTC
78986765 AAAAAGAAAA
Statistics
Matches: 133, Mismatches: 18, Indels: 7
0.84 0.11 0.04
Matches are distributed among these distances:
52 4 0.03
53 44 0.33
54 40 0.30
55 41 0.31
56 4 0.03
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
Found at i:78993198 original size:47 final size:47
Alignment explanation
Indices: 78993140--78993261 Score: 217
Period size: 47 Copynumber: 2.6 Consensus size: 47
78993130 GCATTGGCAC
*
78993140 TAAGACAAGGATACCATGTAAGAACATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
78993187 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
78993234 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
78993262 CCAAGGCATG
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 72 1.00
ACGTcount: A:0.37, C:0.13, G:0.25, T:0.25
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:78993445 original size:108 final size:109
Alignment explanation
Indices: 78993248--78993446 Score: 319
Period size: 108 Copynumber: 1.8 Consensus size: 109
78993238 ATAAGGATAT
* *
78993248 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGGCC
1 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACCATGTAAGACC
* *
78993313 ATGTCAATACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
66 ATGTCAAGACATGGCAATGATGAGTTACTATAAGGCAAAGGTCC
* * *
78993357 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAGGATACCATGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACCATGTAAGACC
*
78993421 ATGTCAAGACATGGCAATGGTGAGTT
66 ATGTCAAGACATGGCAATGATGAGTT
78993447 CAAAAAGAAA
Statistics
Matches: 82, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
108 46 0.56
109 36 0.44
ACGTcount: A:0.34, C:0.18, G:0.26, T:0.23
Consensus pattern (109 bp):
CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACCATGTAAGACC
ATGTCAAGACATGGCAATGATGAGTTACTATAAGGCAAAGGTCC
Found at i:78993448 original size:53 final size:54
Alignment explanation
Indices: 78993240--78993447 Score: 258
Period size: 53 Copynumber: 3.9 Consensus size: 54
78993230 TTGGTAAGAT
* * *
78993240 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* * * * *
78993294 AAGGAAATCATGTAAGGCCATGTCAATACATGGCATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGC
* * *
78993349 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* * *
78993402 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTGAGTTC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTC
78993448 AAAAAGAAAA
Statistics
Matches: 133, Mismatches: 18, Indels: 7
0.84 0.11 0.04
Matches are distributed among these distances:
52 4 0.03
53 44 0.33
54 40 0.30
55 41 0.31
56 4 0.03
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
Found at i:78996796 original size:43 final size:43
Alignment explanation
Indices: 78996743--78996824 Score: 146
Period size: 43 Copynumber: 1.9 Consensus size: 43
78996733 CCGGCATTAC
78996743 GCCTGCTAGGCACGAAGGCCCGAATACACATCACAGGCATAAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACAGGCATAAA
* *
78996786 GCCTGCTAGGCACGAAGGCCCGAGTACACATCACCGGCA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACAGGCA
78996825 CGAAGGCCCG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.30, C:0.33, G:0.26, T:0.11
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACAGGCATAAA
Found at i:78996824 original size:27 final size:27
Alignment explanation
Indices: 78996794--78996856 Score: 117
Period size: 27 Copynumber: 2.3 Consensus size: 27
78996784 AAGCCTGCTA
*
78996794 GGCACGAAGGCCCGAGTACACATCACC
1 GGCACGAAGGCCCGAATACACATCACC
78996821 GGCACGAAGGCCCGAATACACATCACC
1 GGCACGAAGGCCCGAATACACATCACC
78996848 GGCACGAAG
1 GGCACGAAG
78996857 CCTGCTAGGC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.32, C:0.35, G:0.27, T:0.06
Consensus pattern (27 bp):
GGCACGAAGGCCCGAATACACATCACC
Found at i:78996864 original size:70 final size:70
Alignment explanation
Indices: 78996751--78996899 Score: 244
Period size: 70 Copynumber: 2.1 Consensus size: 70
78996741 ACGCCTGCTA
* * *
78996751 GGCACGAAGGCCCGAATACACATCACAGGCATAAAGCCTGCTAGGCACGAAGGCCCGAGTACACA
1 GGCACGAAGGCCCGAATACACATCACAGGCACAAAGCCTGCTAGGCACGAAGGCCCAAATACACA
78996816 TCACC
66 TCACC
* *
78996821 GGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCAAATACACA
1 GGCACGAAGGCCCGAATACACATCACAGGCACAAAGCCTGCTAGGCACGAAGGCCCAAATACACA
78996886 TCACC
66 TCACC
*
78996891 GACACGAAG
1 GGCACGAAG
78996900 CCTGCTAGGC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
70 73 1.00
ACGTcount: A:0.34, C:0.34, G:0.24, T:0.09
Consensus pattern (70 bp):
GGCACGAAGGCCCGAATACACATCACAGGCACAAAGCCTGCTAGGCACGAAGGCCCAAATACACA
TCACC
Found at i:78996882 original size:43 final size:43
Alignment explanation
Indices: 78996821--78996924 Score: 190
Period size: 43 Copynumber: 2.4 Consensus size: 43
78996811 ACACATCACC
* *
78996821 GGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTA
1 GGCACGAAGGCCCAAATACACATCACCGACACGAAGCCTGCTA
78996864 GGCACGAAGGCCCAAATACACATCACCGACACGAAGCCTGCTA
1 GGCACGAAGGCCCAAATACACATCACCGACACGAAGCCTGCTA
78996907 GGCACGAAGGCCCAAATA
1 GGCACGAAGGCCCAAATA
78996925 TAATACCAGC
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.34, C:0.34, G:0.24, T:0.09
Consensus pattern (43 bp):
GGCACGAAGGCCCAAATACACATCACCGACACGAAGCCTGCTA
Found at i:78997016 original size:38 final size:37
Alignment explanation
Indices: 78996922--78997020 Score: 135
Period size: 37 Copynumber: 2.6 Consensus size: 37
78996912 GAAGGCCCAA
* * * *
78996922 ATATAATACCAGCACTAGGCTTGCGGGATTTATCCCGG
1 ATAT-ATACCAGCACGAAGCCTGCGGGATTTAACCCGG
78996960 ATATATACCAGCACGAAGCCTGCGGGATTTAACCCGG
1 ATATATACCAGCACGAAGCCTGCGGGATTTAACCCGG
*
78996997 ATATTTTACCAGCACGAAGCCTGC
1 ATA-TATACCAGCACGAAGCCTGC
78997021 AGGTCTTTAA
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
37 32 0.58
38 23 0.42
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.23
Consensus pattern (37 bp):
ATATATACCAGCACGAAGCCTGCGGGATTTAACCCGG
Found at i:79002317 original size:43 final size:43
Alignment explanation
Indices: 79002270--79002510 Score: 365
Period size: 43 Copynumber: 5.6 Consensus size: 43
79002260 CCGACATTAC
* ** *
79002270 GCCTGCTAGGCATGAAGGCCATAATACATATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
79002313 GCCTGCTAGGCACGAAGGCCCGAATACACATCACTGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* *
79002356 GCCTGCTAGGCACGAAGGCCCGAGTACACATCACCGGCATGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* * * * *
79002399 GCCTGCTAGGCACAAAGGCCAGAATACACATAACTGGAACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
79002442 GCCTGCTAGGCACGAAGGCCCGAATACACCTCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
79002485 GCCTGCTAGGCACGAAGGCCCGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
79002511 TTATACCAGC
Statistics
Matches: 177, Mismatches: 21, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 177 1.00
ACGTcount: A:0.31, C:0.31, G:0.26, T:0.12
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:79002556 original size:38 final size:38
Alignment explanation
Indices: 79002503--79002626 Score: 131
Period size: 38 Copynumber: 3.2 Consensus size: 38
79002493 GGCACGAAGG
* * *** *
79002503 CCCGAATATTATACCAGCACTTGGCCTGCGGGATTTAT
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
79002541 CTCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
** * *
79002579 CCCGGATATTTTACTAGCACGAAGCCTGCGGGTCTTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGG-ATTTAA
79002618 GCCCGGATA
1 -CCCGGATA
79002627 CACATCAAAT
Statistics
Matches: 72, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
38 59 0.82
39 5 0.07
40 8 0.11
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:79016471 original size:2 final size:2
Alignment explanation
Indices: 79016464--79016522 Score: 82
Period size: 2 Copynumber: 29.5 Consensus size: 2
79016454 CATCACTTAT
* * * *
79016464 AC AC AC AC AC AC AC AC AC AC AC AC AT AC AC AA AC AC AT AG AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
79016506 AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC A
79016523 TATATATATG
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.53, C:0.42, G:0.02, T:0.03
Consensus pattern (2 bp):
AC
Found at i:79028904 original size:15 final size:15
Alignment explanation
Indices: 79028884--79028912 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
79028874 TTTATTCACA
79028884 CACCGTGTTATCAAT
1 CACCGTGTTATCAAT
79028899 CACCGTGTTATCAA
1 CACCGTGTTATCAA
79028913 GCAAGAAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.31
Consensus pattern (15 bp):
CACCGTGTTATCAAT
Found at i:79029953 original size:13 final size:14
Alignment explanation
Indices: 79029915--79029954 Score: 64
Period size: 14 Copynumber: 2.9 Consensus size: 14
79029905 CGTTCATCCA
*
79029915 TAATTAATTAATTT
1 TAATCAATTAATTT
79029929 TAATCAATTAATTT
1 TAATCAATTAATTT
79029943 TAATC-ATTAATT
1 TAATCAATTAATT
79029955 AAAGTACTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
13 7 0.28
14 18 0.72
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (14 bp):
TAATCAATTAATTT
Found at i:79030556 original size:85 final size:85
Alignment explanation
Indices: 79030457--79030628 Score: 335
Period size: 85 Copynumber: 2.0 Consensus size: 85
79030447 TTCATATCAG
*
79030457 AGTCAAATCATAATTCAATCATGTTGTCCCTTAAATGGACCCTTAAAGTCCTATTTATATATTAG
1 AGTCAAATCATAATTCAATCATGTTGTCCCTTAAATGGACCCTTAAAGTCCTATTTATACATTAG
79030522 AAATAAGTCGGGACTAAATC
66 AAATAAGTCGGGACTAAATC
79030542 AGTCAAATCATAATTCAATCATGTTGTCCCTTAAATGGACCCTTAAAGTCCTATTTATACATTAG
1 AGTCAAATCATAATTCAATCATGTTGTCCCTTAAATGGACCCTTAAAGTCCTATTTATACATTAG
79030607 AAATAAGTCGGGACTAAATC
66 AAATAAGTCGGGACTAAATC
79030627 AG
1 AG
79030629 GAACTCAAAG
Statistics
Matches: 86, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 86 1.00
ACGTcount: A:0.37, C:0.18, G:0.13, T:0.32
Consensus pattern (85 bp):
AGTCAAATCATAATTCAATCATGTTGTCCCTTAAATGGACCCTTAAAGTCCTATTTATACATTAG
AAATAAGTCGGGACTAAATC
Found at i:79037997 original size:25 final size:25
Alignment explanation
Indices: 79037943--79037997 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
79037933 AGCACTCTCT
* * *
79037943 CGAGCCATATAACAGGATGCTCATG
1 CGAGCCATATAACAAGAAGCTCATC
* *
79037968 TGAGCCATATAACAAGAAGCTTATC
1 CGAGCCATATAACAAGAAGCTCATC
79037993 CGAGC
1 CGAGC
79037998 TAAATCAGGA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.35, C:0.24, G:0.22, T:0.20
Consensus pattern (25 bp):
CGAGCCATATAACAAGAAGCTCATC
Found at i:79040963 original size:55 final size:56
Alignment explanation
Indices: 79040878--79040991 Score: 194
Period size: 55 Copynumber: 2.1 Consensus size: 56
79040868 AATCCCTCCT
* *
79040878 TGATCAAAAGAAGGATTTATTTTTGCTCAATAAATGGCCAGTAGTGGTGTTGGATG
1 TGATCAAAAGAAGGATTTATTTTTGCTCAATAAATAGCCAGTAGTGGCGTTGGATG
*
79040934 TGATC-AAGGAAGGATTTATTTTTGCTCAATAAATAGCCAGTAGTGGCGTTGGATG
1 TGATCAAAAGAAGGATTTATTTTTGCTCAATAAATAGCCAGTAGTGGCGTTGGATG
79040989 TGA
1 TGA
79040992 ACTCTGAAGG
Statistics
Matches: 55, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
55 50 0.91
56 5 0.09
ACGTcount: A:0.30, C:0.10, G:0.27, T:0.33
Consensus pattern (56 bp):
TGATCAAAAGAAGGATTTATTTTTGCTCAATAAATAGCCAGTAGTGGCGTTGGATG
Found at i:79041626 original size:20 final size:21
Alignment explanation
Indices: 79041588--79041626 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
79041578 AATGGTCATG
*
79041588 GATGATTTAAGAGTGACTTAA
1 GATGATTTAAGAGTCACTTAA
*
79041609 GATGA-TTACGAGTCACTT
1 GATGATTTAAGAGTCACTT
79041627 TTTTTTGGTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.33, C:0.10, G:0.23, T:0.33
Consensus pattern (21 bp):
GATGATTTAAGAGTCACTTAA
Found at i:79042164 original size:28 final size:28
Alignment explanation
Indices: 79042132--79042252 Score: 136
Period size: 28 Copynumber: 4.3 Consensus size: 28
79042122 ATTGCATGAC
* *
79042132 TATGAATATGATTGGGCCTGACGAGCCA
1 TATGAATATGATTGGGCCTGATGGGCCA
* *
79042160 TATGAAAATGATTGGGCCTGATGGGGCA
1 TATGAATATGATTGGGCCTGATGGGCCA
* *
79042188 TATGAATGTGATTGGGCCTAATGGGCCA
1 TATGAATATGATTGGGCCTGATGGGCCA
* *
79042216 TATGAATCA-GATTGGGCCTAAAGGGGCCA
1 TATGAAT-ATGATTGGGCCT-GATGGGCCA
*
79042245 AATGAATA
1 TATGAATA
79042253 AGTATGGATC
Statistics
Matches: 80, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
28 66 0.82
29 14 0.17
ACGTcount: A:0.31, C:0.14, G:0.31, T:0.25
Consensus pattern (28 bp):
TATGAATATGATTGGGCCTGATGGGCCA
Found at i:79043517 original size:17 final size:18
Alignment explanation
Indices: 79043484--79043517 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
79043474 TTCAATGAAG
79043484 GGTTTTCAATGAAAATAA
1 GGTTTTCAATGAAAATAA
*
79043502 GGTTTTCGAT-AAAATA
1 GGTTTTCAATGAAAATA
79043518 CTTCAATGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.41, C:0.06, G:0.18, T:0.35
Consensus pattern (18 bp):
GGTTTTCAATGAAAATAA
Found at i:79050110 original size:28 final size:28
Alignment explanation
Indices: 79050058--79050128 Score: 88
Period size: 28 Copynumber: 2.5 Consensus size: 28
79050048 CATGACTATG
* *
79050058 AATGTGATTGGGGCCTGATGGGCCATATA
1 AATGTGATT-GGGCCCGATGAGCCATATA
* *
79050087 AATGTGATTGGGCCCGATGAGCCATGTG
1 AATGTGATTGGGCCCGATGAGCCATATA
*
79050115 AATGAGATTGGGCC
1 AATGTGATTGGGCC
79050129 TAAAGGGGCC
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
28 28 0.76
29 9 0.24
ACGTcount: A:0.24, C:0.15, G:0.35, T:0.25
Consensus pattern (28 bp):
AATGTGATTGGGCCCGATGAGCCATATA
Found at i:79051390 original size:18 final size:17
Alignment explanation
Indices: 79051369--79051402 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
79051359 TTCAAAGAAG
79051369 GGTTTTCAATATAAACAA
1 GGTTTTCAATA-AAACAA
*
79051387 GGTTTTCGATAAAACA
1 GGTTTTCAATAAAACA
79051403 CTTCAATGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.41, C:0.12, G:0.15, T:0.32
Consensus pattern (17 bp):
GGTTTTCAATAAAACAA
Found at i:79055620 original size:49 final size:50
Alignment explanation
Indices: 79055548--79055775 Score: 192
Period size: 50 Copynumber: 4.6 Consensus size: 50
79055538 CTGATACGCA
* * *
79055548 TAGTAGCCTGCATTTAGTACTACACATGCGACC-AACAATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCCGATACACG
* * * * *
79055597 TAGTAGCCTACACTTAGTACTACACACGTGACCTCACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCCGATACACG
* * * * * *
79055647 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTC-AT-TGAGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAA--CAATCCGA-TACACG
* * * * * ** *
79055698 TAGTAGCCTGCACTTAGTACTACACATGCAACTTAATAGTATGATAAACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCCGATACACG
* *
79055748 TAGTAGTCTGCATTTAGTACTACACACG
1 TAGTAGCCTGCACTTAGTACTACACACG
79055776 TGTACTCACA
Statistics
Matches: 145, Mismatches: 28, Indels: 11
0.79 0.15 0.06
Matches are distributed among these distances:
49 29 0.20
50 76 0.52
51 39 0.27
52 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCCGATACACG
Found at i:79055654 original size:50 final size:49
Alignment explanation
Indices: 79055536--79055723 Score: 207
Period size: 50 Copynumber: 3.8 Consensus size: 49
79055526 AGCCAAAGCT
* * * * *
79055536 ATCTGATACGCATAGTAGCCTGCATTTAGTACTACACATGCGACCAACA
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAACC
* * * * *
79055585 ATCCGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACCTCACC
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACC-AACC
* * *
79055635 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTC
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-CC
*
79055686 AT-TGAGTACGCATAGTAGCCTGCACTTAGTACTACACA
1 ATCTGA-TACACATAGTAGCCTGCACTTAGTACTACACA
79055724 TGCAACTTAA
Statistics
Matches: 117, Mismatches: 18, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
49 37 0.32
50 46 0.39
51 34 0.29
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (49 bp):
ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAACC
Found at i:79058710 original size:26 final size:27
Alignment explanation
Indices: 79058656--79058710 Score: 62
Period size: 26 Copynumber: 2.1 Consensus size: 27
79058646 TTGTCGTAAA
*
79058656 TTCAAATCTTTTTGATTCATCAAATAT
1 TTCAAATCTTTTTGATTCATCAAAGAT
79058683 TTCAAA-CTTTTGTGA-TCAGT-AAAGAT
1 TTCAAATCTTTT-TGATTCA-TCAAAGAT
79058709 TT
1 TT
79058711 GGCATTTCTC
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
26 15 0.60
27 10 0.40
ACGTcount: A:0.33, C:0.13, G:0.09, T:0.45
Consensus pattern (27 bp):
TTCAAATCTTTTTGATTCATCAAAGAT
Found at i:79063133 original size:50 final size:50
Alignment explanation
Indices: 79063008--79063196 Score: 220
Period size: 50 Copynumber: 3.8 Consensus size: 50
79062998 AGCCAAAGCT
* * * * *
79063008 ATCTGATACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC-AACA
1 ATCTGATACACGTAGTAGCCTACACTTAGTACTACACACGCGACCTAACC
* * * *
79063057 ATCCGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACCTCACC
1 ATCTGATACACGTAGTAGCCTACACTTAGTACTACACACGCGACCTAACC
* * *
79063107 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACATGCGACTTAA-C
1 ATCTGATACACGTAGTAGCCTACACTTAGTACTACACACGCGACCTAACC
* * *
79063156 AGTATGGTACATGTAGTAGCCTACACTTAGTACTACACACG
1 A-TCTGATACACGTAGTAGCCTACACTTAGTACTACACACG
79063197 TGTACTCACA
Statistics
Matches: 117, Mismatches: 21, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
49 40 0.34
50 77 0.66
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (50 bp):
ATCTGATACACGTAGTAGCCTACACTTAGTACTACACACGCGACCTAACC
Found at i:79063205 original size:100 final size:99
Alignment explanation
Indices: 79063008--79063198 Score: 310
Period size: 99 Copynumber: 1.9 Consensus size: 99
79062998 AGCCAAAGCT
* *
79063008 ATCTGATACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCCGGTACACGTAGT
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATACGGTACACGTAGT
79063073 AGCCTACACTTAGTACTACACACGTGACCTCACC
66 AGCCTACACTTAGTACTACACACGTGACCTCACC
* * * * *
79063107 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACATGCGACTTAACAGTATGGTACATGTAG
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACATGCGAC-CAACAATACGGTACACGTAG
79063172 TAGCCTACACTTAGTACTACACACGTG
65 TAGCCTACACTTAGTACTACACACGTG
79063199 TACTCACAAT
Statistics
Matches: 84, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
99 42 0.50
100 42 0.50
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (99 bp):
ATCTGATACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATACGGTACACGTAGT
AGCCTACACTTAGTACTACACACGTGACCTCACC
Found at i:79077384 original size:6 final size:6
Alignment explanation
Indices: 79077375--79077412 Score: 58
Period size: 6 Copynumber: 6.3 Consensus size: 6
79077365 TTTGTTTTCC
* *
79077375 TTTTAG TTTTAG TTTTAG TTTTAT TTTTAT TTTTAG TT
1 TTTTAG TTTTAG TTTTAG TTTTAG TTTTAG TTTTAG TT
79077413 GTTTTATTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.16, C:0.00, G:0.11, T:0.74
Consensus pattern (6 bp):
TTTTAG
Found at i:79091592 original size:67 final size:67
Alignment explanation
Indices: 79091460--79091618 Score: 180
Period size: 67 Copynumber: 2.4 Consensus size: 67
79091450 TATATACAGT
* * * * **
79091460 TATAGTCGAGCTATGGTCTTATACATCATACCCCATGTTTAATGTCCTAGTGGACTCTTTATGTT
1 TATAGTCGAACTATGGTATTACACATCATACCCCATGTTTAATGTCCTAGTAGACTCTCCATGTT
79091525 GC
66 GC
* * * *
79091527 TATAGTCGAACTGTGGTATTACACATCATACCTCATGTTTAATGTCCTGGTAGACTCTCCGTGTT
1 TATAGTCGAACTATGGTATTACACATCATACCCCATGTTTAATGTCCTAGTAGACTCTCCATGTT
79091592 G-
66 GC
*
79091593 TCATAG-C-ACACTATGGTCTTACACAT
1 T-ATAGTCGA-ACTATGGTATTACACAT
79091619 TAAACCTCCT
Statistics
Matches: 78, Mismatches: 12, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
65 1 0.01
66 17 0.22
67 60 0.77
ACGTcount: A:0.24, C:0.22, G:0.18, T:0.36
Consensus pattern (67 bp):
TATAGTCGAACTATGGTATTACACATCATACCCCATGTTTAATGTCCTAGTAGACTCTCCATGTT
GC
Found at i:79092542 original size:22 final size:21
Alignment explanation
Indices: 79092485--79092543 Score: 82
Period size: 21 Copynumber: 2.8 Consensus size: 21
79092475 CCTAGGAGTT
*
79092485 CATTTCTCAACTATTTATAGC
1 CATTTCTCAACTATCTATAGC
79092506 CATTTCTCAACTATCTATAGC
1 CATTTCTCAACTATCTATAGC
* *
79092527 CCTTTCTTGAACTATCT
1 CATTTC-TCAACTATCT
79092544 TCAACGGTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
21 25 0.74
22 9 0.26
ACGTcount: A:0.25, C:0.27, G:0.05, T:0.42
Consensus pattern (21 bp):
CATTTCTCAACTATCTATAGC
Found at i:79098441 original size:29 final size:29
Alignment explanation
Indices: 79098404--79098460 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
79098394 GTATGCTTTA
* *
79098404 TGTTGACCTTTGATATTATGGCTTATTTC
1 TGTTAACCTTTGATATTATGGATTATTTC
79098433 TGTTAACCTTTGATATTATGGATTATTT
1 TGTTAACCTTTGATATTATGGATTATTT
79098461 ATGGCTTCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.21, C:0.11, G:0.16, T:0.53
Consensus pattern (29 bp):
TGTTAACCTTTGATATTATGGATTATTTC
Found at i:79101342 original size:37 final size:37
Alignment explanation
Indices: 79101174--79101400 Score: 172
Period size: 37 Copynumber: 6.1 Consensus size: 37
79101164 GAAAAATGGA
* *
79101174 ATACTAAATGGGCTCAAATGAGCAATGTCTACT-ATT
1 ATACTAAATGTGCTCAAATGAGCAATATCTACTGATT
* * * *
79101210 ATATTGAATATGCTCAAATGAGCAATATCTACTGA-A
1 ATACTAAATGTGCTCAAATGAGCAATATCTACTGATT
* * ** *
79101246 ACTACTGAACGTGCTCAAAACAGCAATGTCTACTGATT
1 A-TACTAAATGTGCTCAAATGAGCAATATCTACTGATT
* * *
79101284 ATATTGAAA-GTTGCTCAAATGAGCGATATCCACTGATT
1 ATACT-AAATG-TGCTCAAATGAGCAATATCTACTGATT
* * * * *
79101322 ATACTAAATGGGCTCAAATGACCAATATTTACTAAAT
1 ATACTAAATGTGCTCAAATGAGCAATATCTACTGATT
* * * ** * *
79101359 ATATTGAACGTGCTCAAAAAAGCAATAACTACTAATT
1 ATACTAAATGTGCTCAAATGAGCAATATCTACTGATT
79101396 ATACT
1 ATACT
79101401 GAAAAAGTTG
Statistics
Matches: 146, Mismatches: 39, Indels: 11
0.74 0.20 0.06
Matches are distributed among these distances:
36 29 0.20
37 87 0.60
38 30 0.21
ACGTcount: A:0.39, C:0.17, G:0.14, T:0.30
Consensus pattern (37 bp):
ATACTAAATGTGCTCAAATGAGCAATATCTACTGATT
Found at i:79101362 original size:75 final size:73
Alignment explanation
Indices: 79101173--79101385 Score: 225
Period size: 75 Copynumber: 2.9 Consensus size: 73
79101163 AGAAAAATGG
79101173 AATACTAAATGGGCTCAAATGAGCAATGTCTACTATTATATTG-AA-TATGCTCAAATGAGCAAT
1 AATACTAAATGGGCTCAAATGAGCAATGTCTACTATTATATTGAAAGT-TGCTCAAATGAGCAAT
*
79101236 ATCTACTGA
65 ATCCACTGA
* * * ** *
79101245 AACTACTGAACGTGCTCAAAACAGCAATGTCTACTGATTATATTGAAAGTTGCTCAAATGAGCGA
1 AA-TACTAAATGGGCTCAAATGAGCAATGTCTACT-ATTATATTGAAAGTTGCTCAAATGAGCAA
79101310 TATCCACTGA
64 TATCCACTGA
* * * * * * **
79101320 TTATACTAAATGGGCTCAAATGACCAATATTTACTAAATATATTGAACG-TGCTCAAAAAAGCAA
1 -AATACTAAATGGGCTCAAATGAGCAATGTCTACT-ATTATATTGAAAGTTGCTCAAATGAGCAA
79101384 TA
64 TA
79101386 ACTACTAATT
Statistics
Matches: 114, Mismatches: 22, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
72 2 0.02
73 27 0.24
74 23 0.20
75 60 0.53
76 2 0.02
ACGTcount: A:0.39, C:0.17, G:0.15, T:0.29
Consensus pattern (73 bp):
AATACTAAATGGGCTCAAATGAGCAATGTCTACTATTATATTGAAAGTTGCTCAAATGAGCAATA
TCCACTGA
Found at i:79101404 original size:112 final size:113
Alignment explanation
Indices: 79101185--79101453 Score: 319
Period size: 112 Copynumber: 2.4 Consensus size: 113
79101175 TACTAAATGG
* * * * ** * *
79101185 GCTCAAATGAGCAATGTCTACT-ATTATATTGAATATGCTCAAATGAGCAATATCTACTGAAACT
1 GCTCAAATGAGCGATATCCACTGATTATACTGAATGGGCTCAAATGACCAATATCTACTGAAAAT
* ** * *
79101249 ACTGAACGTGCTCAAAACAGCAATGTCTACTGATTATATTG-AAAGTT
66 ACTGAACGTGCTCAAAAAAGCAATAACTACTAATTATACTGAAAAGTT
* *
79101296 GCTCAAATGAGCGATATCCACTGATTATACTAAATGGGCTCAAATGACCAATATTTACT-AAATA
1 GCTCAAATGAGCGATATCCACTGATTATACTGAATGGGCTCAAATGACCAATATCTACTGAAA-A
*
79101360 TATTGAACGTGCTCAAAAAAGCAATAACTACTAATTATACTGAAAAAGTT
65 TACTGAACGTGCTCAAAAAAGCAATAACTACTAATTATACTG-AAAAGTT
* * * *
79101410 GCTTAAACGAACGATATCCATTGATTATACTGAATGGGCTCAAA
1 GCTCAAATGAGCGATATCCACTGATTATACTGAATGGGCTCAAA
79101454 CAAGCTATAC
Statistics
Matches: 133, Mismatches: 21, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
111 22 0.17
112 66 0.50
114 45 0.34
ACGTcount: A:0.39, C:0.17, G:0.15, T:0.29
Consensus pattern (113 bp):
GCTCAAATGAGCGATATCCACTGATTATACTGAATGGGCTCAAATGACCAATATCTACTGAAAAT
ACTGAACGTGCTCAAAAAAGCAATAACTACTAATTATACTGAAAAGTT
Found at i:79101476 original size:114 final size:112
Alignment explanation
Indices: 79101251--79101468 Score: 274
Period size: 114 Copynumber: 1.9 Consensus size: 112
79101241 CTGAAACTAC
* ** * * * *
79101251 TGAACGTGCTCAAAACAGCAATGTCTACTGATTATATTGAAAGTTGCTCAAATGAGCGATATCCA
1 TGAACGTGCTCAAAAAAGCAATAACTACTAATTATACTGAAAGTTGCTCAAACGAACGATATCCA
** **
79101316 CTGATTATACTAAATGGGCTCAAATGACCAATATTTACTAAATATAT
66 CTGATTATACTAAATGGGCTCAAACAACCAATACCTACTAAATATAT
*
79101363 TGAACGTGCTCAAAAAAGCAATAACTACTAATTATACTGAAAAAGTTGCTTAAACGAACGATATC
1 TGAACGTGCTCAAAAAAGCAATAACTACTAATTATACTG--AAAGTTGCTCAAACGAACGATATC
* * * *
79101428 CATTGATTATACTGAATGGGCTCAAACAAGCTATACCTACT
64 CACTGATTATACTAAATGGGCTCAAACAACCAATACCTACT
79101469 GACTATATGG
Statistics
Matches: 88, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
112 34 0.39
114 54 0.61
ACGTcount: A:0.39, C:0.18, G:0.15, T:0.28
Consensus pattern (112 bp):
TGAACGTGCTCAAAAAAGCAATAACTACTAATTATACTGAAAGTTGCTCAAACGAACGATATCCA
CTGATTATACTAAATGGGCTCAAACAACCAATACCTACTAAATATAT
Found at i:79104177 original size:43 final size:42
Alignment explanation
Indices: 79104114--79104277 Score: 188
Period size: 42 Copynumber: 3.9 Consensus size: 42
79104104 TACCGTACCA
* * *
79104114 ATGCCATATCCTAGATATGGTCTTACATGTAATTTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACATGAAATCTCATATCG
* * *
79104156 ATGCCAATAGCCCA-ACTATGGTCTTACA-CAAAGTCTCATATCA
1 ATGCC-ATATCCCAGA-TATGGTCTTACATGAAA-TCTCATATCG
* *
79104199 ATGCTATATCCCAGATATGGTCTTACATGAAATCTCATATAG
1 ATGCCATATCCCAGATATGGTCTTACATGAAATCTCATATCG
* * *
79104241 ATGCCATATCCTAGATATGGTCTTACACGTAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACATGAAATCTCA
79104278 ATAACCCTAA
Statistics
Matches: 102, Mismatches: 15, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
42 68 0.67
43 34 0.33
ACGTcount: A:0.32, C:0.23, G:0.13, T:0.32
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACATGAAATCTCATATCG
Found at i:79115463 original size:12 final size:13
Alignment explanation
Indices: 79115446--79115474 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
79115436 AGATGGACAA
79115446 AATTTGGC-TTTT
1 AATTTGGCTTTTT
79115458 AATTTGGCTTTTT
1 AATTTGGCTTTTT
79115471 AATT
1 AATT
79115475 CATTTAATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 8 0.50
13 8 0.50
ACGTcount: A:0.21, C:0.07, G:0.14, T:0.59
Consensus pattern (13 bp):
AATTTGGCTTTTT
Found at i:79120686 original size:47 final size:47
Alignment explanation
Indices: 79120632--79120967 Score: 438
Period size: 47 Copynumber: 7.1 Consensus size: 47
79120622 TTAAGATTTT
** * *
79120632 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
* *
79120679 ATGTGATGAATGTGAACCTGTATATATATGCATGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATG--CATATATG-A-GATAAGGCCGAATGGCCA
* * * *
79120730 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGACA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
* * *
79120777 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
* * **
79120824 ATGTGATGAATGTGAACATGCGTATGTGTTATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
*
79120871 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
* * * *
79120918 ATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
79120965 ATG
1 ATG
79120968 CGAAATGTGT
Statistics
Matches: 264, Mismatches: 21, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
47 214 0.81
49 13 0.05
50 1 0.00
51 36 0.14
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
Done.