Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 229 of 295
Found at i:79120759 original size:25 final size:25
Alignment explanation
Indices: 79120731--79120808 Score: 67
Period size: 25 Copynumber: 3.2 Consensus size: 25
79120721 GAATGGCCAA
79120731 TGTGATGAATGTGAACATGCGTATG
1 TGTGATGAATGTGAACATGCGTATG
* * **
79120756 TGTGAT-AAGGCCG-A-ATG-G-ACAA
1 TGTGATGAATG-TGAACATGCGTA-TG
79120778 TGTGATGAATGTGAACATGCGTATG
1 TGTGATGAATGTGAACATGCGTATG
79120803 TGTGAT
1 TGTGAT
79120809 AAGGCCGAAT
Statistics
Matches: 38, Mismatches: 8, Indels: 14
0.63 0.13 0.23
Matches are distributed among these distances:
21 1 0.03
22 8 0.21
23 7 0.18
24 7 0.18
25 14 0.37
26 1 0.03
ACGTcount: A:0.29, C:0.09, G:0.32, T:0.29
Consensus pattern (25 bp):
TGTGATGAATGTGAACATGCGTATG
Found at i:79121077 original size:46 final size:46
Alignment explanation
Indices: 79120941--79121077 Score: 202
Period size: 46 Copynumber: 3.0 Consensus size: 46
79120931 GAACATGTAT
* * *
79120941 ATATGTGGTAAGGCCGAATGGCTAATGCGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATGTGTATGAGATGG
* *
79120987 ATATGAGGTAAAGCCGAATGGCTAATGTGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATGTGTATGAGATGG
* * *
79121033 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATGTGTATGAGATG
79121078 TGTATATATA
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 81 1.00
ACGTcount: A:0.34, C:0.08, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATGTGTATGAGATGG
Found at i:79132769 original size:6 final size:6
Alignment explanation
Indices: 79132760--79132797 Score: 58
Period size: 6 Copynumber: 6.3 Consensus size: 6
79132750 TTTGTTTTCC
* *
79132760 TTTTAG TTTTAG TTTTAG TTTTAT TTTTAT TTTTAG TT
1 TTTTAG TTTTAG TTTTAG TTTTAG TTTTAG TTTTAG TT
79132798 GTTTTATTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.16, C:0.00, G:0.11, T:0.74
Consensus pattern (6 bp):
TTTTAG
Found at i:79198941 original size:39 final size:39
Alignment explanation
Indices: 79198896--79199170 Score: 480
Period size: 39 Copynumber: 7.1 Consensus size: 39
79198886 ATGCAAGACA
79198896 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
79198935 CTGGAAATGTATCCGGGCTAAAGT-CCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
79198973 CTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
79199012 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
79199051 CTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
79199090 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
79199129 CTGGAAATGTATCCGGGTTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
79199168 CTG
1 CTG
79199171 ATAATATAAT
Statistics
Matches: 225, Mismatches: 10, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
38 36 0.16
39 189 0.84
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:79204883 original size:39 final size:39
Alignment explanation
Indices: 79204765--79205037 Score: 462
Period size: 39 Copynumber: 7.1 Consensus size: 39
79204755 ATGCAAGACA
79204765 CTGGAAATGTATCC-GGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
79204803 CTGGAAATGTATCCGGGCTAAAGT-CC-CAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
79204840 CTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
79204879 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
79204918 CTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
79204957 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
79204996 CTGGAAATGTATCCGGGTTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
79205035 CTG
1 CTG
79205038 ATAATATAAT
Statistics
Matches: 222, Mismatches: 10, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
37 33 0.15
38 18 0.08
39 171 0.77
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:79212903 original size:19 final size:19
Alignment explanation
Indices: 79212879--79212925 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
79212869 TTTTTAAAAT
79212879 TTTTATAAAAAATTTTAAC
1 TTTTATAAAAAATTTTAAC
* **
79212898 TTTTATATATTATTTTAAC
1 TTTTATAAAAAATTTTAAC
79212917 TTTT-TAAAA
1 TTTTATAAAA
79212926 TTTATAATAA
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
18 3 0.13
19 20 0.87
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.55
Consensus pattern (19 bp):
TTTTATAAAAAATTTTAAC
Found at i:79212944 original size:30 final size:28
Alignment explanation
Indices: 79212899--79212985 Score: 95
Period size: 31 Copynumber: 2.9 Consensus size: 28
79212889 AATTTTAACT
*
79212899 TTTATATAT-TATTTTAACTTTTTAAAA
1 TTTATATATATATTTTAAATTTTTAAAA
79212926 TTTATAATAATATATTTTAGAATTTTATAAAAAA
1 TTTAT-AT-ATATATTTTA-AATTTT-T--AAAA
*
79212960 TTTATATATATTTTTTAAATTTTTAA
1 TTTATATATATATTTTAAATTTTTAA
79212986 TGAATATAAA
Statistics
Matches: 51, Mismatches: 2, Indels: 13
0.77 0.03 0.20
Matches are distributed among these distances:
27 5 0.10
28 4 0.08
29 2 0.04
30 8 0.16
31 11 0.22
32 10 0.20
33 2 0.04
34 9 0.18
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.56
Consensus pattern (28 bp):
TTTATATATATATTTTAAATTTTTAAAA
Found at i:79222357 original size:42 final size:41
Alignment explanation
Indices: 79222196--79222358 Score: 121
Period size: 42 Copynumber: 3.9 Consensus size: 41
79222186 AGATGCCAAT
* * * * * * *
79222196 GCCATGTCCCAGACATGGTCTTACATGGGATCTCACATTGAT
1 GCCATATCCCAGACATGGTCTTACA-CGAAACTCATATCGAC
* ** * *
79222238 GCCATATCCCAGATATGGTCTTTTACGAATTCTCATTTCGAC
1 GCCATATCCCAGACATGGTCTTACACGAA-ACTCATATCGAC
* * *
79222280 -CCTATATCTCGGACATGGTCTTACACGAAATCTCATATCAAC
1 GCC-ATATCCCAGACATGGTCTTACACGAAA-CTCATATCGAC
* *
79222322 GCCATATCCCAGATATGGTCTTACATGATAACTCATA
1 GCCATATCCCAGACATGGTCTTACACGA-AACTCATA
79222359 CTGATGCCTA
Statistics
Matches: 94, Mismatches: 22, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
41 4 0.04
42 86 0.91
43 4 0.04
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.31
Consensus pattern (41 bp):
GCCATATCCCAGACATGGTCTTACACGAAACTCATATCGAC
Found at i:79225502 original size:21 final size:21
Alignment explanation
Indices: 79225461--79225502 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
79225451 GAGTTGTTTA
*
79225461 TCTATCAATAATCTTTCATTT
1 TCTATCAATAATCTTTAATTT
*
79225482 TCTATC-ATAAATTTTTAATTT
1 TCTATCAAT-AATCTTTAATTT
79225503 GCAGCATAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
20 2 0.11
21 16 0.89
ACGTcount: A:0.31, C:0.14, G:0.00, T:0.55
Consensus pattern (21 bp):
TCTATCAATAATCTTTAATTT
Found at i:79228897 original size:18 final size:18
Alignment explanation
Indices: 79228874--79228908 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
79228864 ATTGTAGAAG
79228874 TTTATTTCAACTAGAAAT
1 TTTATTTCAACTAGAAAT
79228892 TTTATTTCAACTAGAAA
1 TTTATTTCAACTAGAAA
79228909 ATCAAACTCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.40, C:0.11, G:0.06, T:0.43
Consensus pattern (18 bp):
TTTATTTCAACTAGAAAT
Found at i:79229876 original size:13 final size:13
Alignment explanation
Indices: 79229860--79229885 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
79229850 ATTCTAAACG
79229860 AACTTACTAAGCT
1 AACTTACTAAGCT
79229873 AACTTACTAAGCT
1 AACTTACTAAGCT
79229886 TCATTAAAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.23, G:0.08, T:0.31
Consensus pattern (13 bp):
AACTTACTAAGCT
Found at i:79234844 original size:27 final size:27
Alignment explanation
Indices: 79234812--79234881 Score: 86
Period size: 27 Copynumber: 2.6 Consensus size: 27
79234802 GGTAGTCCAC
*
79234812 TAGGACATTAAACATGGAGTAGTTTGT
1 TAGGACATTAAACATGGAGTAGTCTGT
* * * *
79234839 TGGGACATCAAACACGGTGTAGTCTGT
1 TAGGACATTAAACATGGAGTAGTCTGT
*
79234866 TAGGACGTTAAACATG
1 TAGGACATTAAACATG
79234882 AGATAAAATG
Statistics
Matches: 34, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.31, C:0.13, G:0.27, T:0.29
Consensus pattern (27 bp):
TAGGACATTAAACATGGAGTAGTCTGT
Found at i:79235093 original size:7 final size:7
Alignment explanation
Indices: 79235081--79235118 Score: 58
Period size: 7 Copynumber: 5.4 Consensus size: 7
79235071 AACATGATTT
79235081 GGTTTAG
1 GGTTTAG
79235088 GGTTTAG
1 GGTTTAG
*
79235095 GGTTTAA
1 GGTTTAG
*
79235102 AGTTTAG
1 GGTTTAG
79235109 GGTTTAG
1 GGTTTAG
79235116 GGT
1 GGT
79235119 AGAAATGTAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.18, C:0.00, G:0.39, T:0.42
Consensus pattern (7 bp):
GGTTTAG
Found at i:79250248 original size:39 final size:40
Alignment explanation
Indices: 79250175--79250258 Score: 134
Period size: 43 Copynumber: 2.0 Consensus size: 40
79250165 CATTCACAAG
79250175 TAAAAATCACATATTAAGCAAGCAAGTGTCAGAATATCAGGGC
1 TAAAAATCACATATTAAGCAAGC-A--GTCAGAATATCAGGGC
79250218 TAAAAATCACATATTAAGCAAGC-GTCAGAATATCAGGGC
1 TAAAAATCACATATTAAGCAAGCAGTCAGAATATCAGGGC
79250257 TA
1 TA
79250259 CAATGAACTT
Statistics
Matches: 41, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
39 18 0.44
43 23 0.56
ACGTcount: A:0.44, C:0.17, G:0.18, T:0.21
Consensus pattern (40 bp):
TAAAAATCACATATTAAGCAAGCAGTCAGAATATCAGGGC
Found at i:79254655 original size:16 final size:16
Alignment explanation
Indices: 79254631--79254694 Score: 56
Period size: 16 Copynumber: 4.0 Consensus size: 16
79254621 AAAAATATAT
* *
79254631 AATAGAATTGTAATAG
1 AATAAAATTATAATAG
*
79254647 AATAAAATTATAATGG
1 AATAAAATTATAATAG
* * * * *
79254663 AGTAGAGTTGTAATAA
1 AATAAAATTATAATAG
79254679 AATAAAATTATAATAG
1 AATAAAATTATAATAG
79254695 TAATTTAATT
Statistics
Matches: 34, Mismatches: 14, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.53, C:0.00, G:0.16, T:0.31
Consensus pattern (16 bp):
AATAAAATTATAATAG
Found at i:79255128 original size:12 final size:12
Alignment explanation
Indices: 79255098--79255132 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
79255088 TATAGGTTAC
79255098 TTAAAGAATAAT
1 TTAAAGAATAAT
*
79255110 TTAAAAGAGTAAT
1 TT-AAAGAATAAT
79255123 TTAAAGAATA
1 TTAAAGAATA
79255133 TCTTGTCTCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.57, C:0.00, G:0.11, T:0.31
Consensus pattern (12 bp):
TTAAAGAATAAT
Found at i:79266299 original size:13 final size:13
Alignment explanation
Indices: 79266281--79266308 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
79266271 TGACCATCAA
79266281 GTTACATCAATTT
1 GTTACATCAATTT
79266294 GTTACATCAATTT
1 GTTACATCAATTT
79266307 GT
1 GT
79266309 CATTCAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.14, G:0.11, T:0.46
Consensus pattern (13 bp):
GTTACATCAATTT
Found at i:79268194 original size:12 final size:11
Alignment explanation
Indices: 79268166--79268191 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
79268156 TAATAAATTT
79268166 AAAATTATTAA
1 AAAATTATTAA
79268177 AAAATTATTAA
1 AAAATTATTAA
79268188 AAAA
1 AAAA
79268192 ATTTACTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (11 bp):
AAAATTATTAA
Found at i:79270644 original size:45 final size:45
Alignment explanation
Indices: 79270580--79270670 Score: 137
Period size: 45 Copynumber: 2.0 Consensus size: 45
79270570 TCAAAACATG
* * *
79270580 TGTCAAATACATCATGAACTCGGACCACAACTCGATGAGTTTAGA
1 TGTCAAATACATCATGAACTCAGACCACAACTCAATGAGTTCAGA
* *
79270625 TGTCACATATATCATGAACTCAGACCACAACTCAATGAGTTCAGA
1 TGTCAAATACATCATGAACTCAGACCACAACTCAATGAGTTCAGA
79270670 T
1 T
79270671 TACATAGTTC
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.25
Consensus pattern (45 bp):
TGTCAAATACATCATGAACTCAGACCACAACTCAATGAGTTCAGA
Found at i:79279274 original size:21 final size:20
Alignment explanation
Indices: 79279250--79279288 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
79279240 AAAACCCTTC
79279250 TTAAAATAAAAGAAACCTTAA
1 TTAAAATAAAA-AAACCTTAA
**
79279271 TTAACTTAAAAAAACCTT
1 TTAAAATAAAAAAACCTT
79279289 TCAGTTACGA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.56, C:0.13, G:0.03, T:0.28
Consensus pattern (20 bp):
TTAAAATAAAAAAACCTTAA
Found at i:79280342 original size:29 final size:29
Alignment explanation
Indices: 79280285--79280386 Score: 111
Period size: 29 Copynumber: 3.6 Consensus size: 29
79280275 TACCTATATC
*
79280285 TGGCCCATT-GAGCCC-AATCATAT-TCATA
1 TGGCCCATTAG-GCCCAAATCACATGT-ATA
* * *
79280313 TGACCCATGAGGCCCAAATCACCTGTATA
1 TGGCCCATTAGGCCCAAATCACATGTATA
*
79280342 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATGTATA
*
79280371 TGGCCCGTTAGGCCCA
1 TGGCCCATTAGGCCCA
79280387 GTCATATTCA
Statistics
Matches: 62, Mismatches: 9, Indels: 5
0.82 0.12 0.07
Matches are distributed among these distances:
28 11 0.18
29 50 0.81
30 1 0.02
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATGTATA
Found at i:79280384 original size:58 final size:57
Alignment explanation
Indices: 79280276--79280386 Score: 134
Period size: 58 Copynumber: 1.9 Consensus size: 57
79280266 AAACTCACAT
* *
79280276 ACCTATATCTGGCCCATTGAGCCCAATCATATTCATATGACCCATGAGGCCCAAATC
1 ACCTATATATGGCCCATTGAGCCCAATCACATTCATATGACCCATGAGGCCCAAATC
* * * * *
79280333 ACCTGTATATGGCCCATT-AGGCCCAAATCACATTTATATGGCCCGTTAGGCCCA
1 ACCTATATATGGCCCATTGA-GCCC-AATCACATTCATATGACCCATGAGGCCCA
79280387 GTCATATTCA
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
56 1 0.02
57 20 0.44
58 24 0.53
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.25
Consensus pattern (57 bp):
ACCTATATATGGCCCATTGAGCCCAATCACATTCATATGACCCATGAGGCCCAAATC
Found at i:79283049 original size:38 final size:42
Alignment explanation
Indices: 79282998--79283423 Score: 312
Period size: 49 Copynumber: 9.0 Consensus size: 42
79282988 ATATACACTT
79282998 TCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACA
1 TCACATT-ATCACATCGGCCATTAGGCCTCATCACATATATA-A
*
79283042 CTTTCACATTCATCACATCGGCTATTAGGCCTCATCACATATATACA
1 ---TCACATT-ATCACATCGGCCATTAGGCCTCATCACATATATA-A
*
79283089 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA
1 ---TCACATT-ATCACATCGGCCATTAGGCCTCATCAC--ATATATA-A
*
79283138 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
1 ---TCACATT-ATCACATCGGCCATTAGGCCTCATCACATATATA-A
* *
79283185 CTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATACA
1 ---TCACATT-ATCACATCGGCCATTAGGCCTCATCAC--ATATATA-A
*
79283234 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA
1 ---TCACATT-ATCACATCGGCCATTAGGCCTCATCAC--ATATATA-A
*
79283283 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA
1 ---TCACATT-ATCACATCGGCCATTAGGCCTCATCAC--ATATATA-A
* *
79283332 CTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATACA
1 ---TCACATT-ATCACATCGGCCATTAGGCCTCATCACATATATA-A
* *
79283379 CTTTCACATTCATCACACCGGCCATTAGGCCTTATCACATATATA
1 ---TCACATT-ATCACATCGGCCATTAGGCCTCATCACATATATA
79283424 TACATTCACA
Statistics
Matches: 367, Mismatches: 8, Indels: 8
0.96 0.02 0.02
Matches are distributed among these distances:
47 177 0.48
49 190 0.52
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (42 bp):
TCACATTATCACATCGGCCATTAGGCCTCATCACATATATAA
Found at i:79283152 original size:49 final size:49
Alignment explanation
Indices: 79282931--79283434 Score: 786
Period size: 47 Copynumber: 10.6 Consensus size: 49
79282921 CCCTTCGGGA
* * * * *
79282931 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGG-
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
79282977 CTCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CT-TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
79283025 CTCATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
79283072 CTCATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79283119 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
79283168 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79283215 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79283264 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
79283313 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
79283362 CTTATCAC--ATATATACACTTTCACATTCATCACACCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79283409 CTTATCACATATATATACA--TTCACAT
1 CTTATCACATATATATACACTTTCACAT
79283435 CACAATTATC
Statistics
Matches: 432, Mismatches: 16, Indels: 19
0.93 0.03 0.04
Matches are distributed among these distances:
46 3 0.01
47 228 0.53
48 2 0.00
49 199 0.46
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:79283165 original size:96 final size:96
Alignment explanation
Indices: 79282931--79283434 Score: 824
Period size: 96 Copynumber: 5.3 Consensus size: 96
79282921 CCCTTCGGGA
* * * * * *
79282931 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGG-CTCTGTCACATATATA
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT-TATCACATATATA
79282993 CACTTTCACATTCATCACATCGGCCATTAGGC
65 CACTTTCACATTCATCACATCGGCCATTAGGC
* * *
79283025 CTCATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTCATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
79283088 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
79283119 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
79283184 ACTTTCACATTCATCACATCGGCCATTAAGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
79283215 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
79283280 ACACTTTCACATTCATCACATCGGCCATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
*
79283313 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
79283378 ACTTTCACATTCATCACACCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
79283409 CTTATCACATATATATACA--TTCACAT
1 CTTATCACATATATATACACTTTCACAT
79283435 CACAATTATC
Statistics
Matches: 387, Mismatches: 16, Indels: 14
0.93 0.04 0.03
Matches are distributed among these distances:
93 1 0.00
94 93 0.24
95 2 0.01
96 197 0.51
98 94 0.24
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:79283470 original size:145 final size:144
Alignment explanation
Indices: 79282931--79283434 Score: 781
Period size: 145 Copynumber: 3.5 Consensus size: 144
79282921 CCCTTCGGGA
* * * * * * *
79282931 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGG-CTCTGTCAC--ATATATA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT-TATCACATATATATA
*
79282993 CACTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC--ATATATACACTTTCACATTCATC
65 CAC-TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATC
*
79283056 ACATCGGCTATTAGGC
129 ACATCGGCCATTAGGC
*
79283072 CTCATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
79283137 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCA
66 AC-TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
*
79283200 CATCGGCCATTAAGC
130 CATCGGCCATTAGGC
79283215 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
79283280 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCAT
64 ACAC-TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCAT
*
79283345 CACATCGGCCATTCGGC
128 CACATCGGCCATTAGGC
*
79283362 CTTATCACATATATACACTTTCACATTCATCACACCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
79283427 A-TTCACAT
66 ACTTCACAT
79283435 CACAATTATC
Statistics
Matches: 341, Mismatches: 15, Indels: 12
0.93 0.04 0.03
Matches are distributed among these distances:
141 44 0.13
142 2 0.01
143 97 0.28
145 153 0.45
147 45 0.13
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (144 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCAC
ATCGGCCATTAGGC
Found at i:79292836 original size:20 final size:21
Alignment explanation
Indices: 79292821--79292860 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
79292811 CAAAACTTGT
79292821 ATAA-CTATCATCAAACATTC
1 ATAATCTATCATCAAACATTC
*
79292841 ATAATCTATCATCAATCATT
1 ATAATCTATCATCAAACATT
79292861 AAAATACATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.42, C:0.23, G:0.00, T:0.35
Consensus pattern (21 bp):
ATAATCTATCATCAAACATTC
Found at i:79296366 original size:10 final size:10
Alignment explanation
Indices: 79296317--79296364 Score: 53
Period size: 10 Copynumber: 4.9 Consensus size: 10
79296307 TAAATTCTAA
79296317 AAAGATAAAT
1 AAAGATAAAT
* ** *
79296327 ACATTTAATT
1 AAAGATAAAT
79296337 AAAGATAAAT
1 AAAGATAAAT
79296347 AAAGATAAAT
1 AAAGATAAAT
79296357 AAA-ATAAA
1 AAAGATAAA
79296365 ATCCTAAAAT
Statistics
Matches: 30, Mismatches: 8, Indels: 1
0.77 0.21 0.03
Matches are distributed among these distances:
9 5 0.17
10 25 0.83
ACGTcount: A:0.67, C:0.02, G:0.06, T:0.25
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:79296389 original size:27 final size:26
Alignment explanation
Indices: 79296359--79296421 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
79296349 AGATAAATAA
79296359 AATAAAATCCTAAAATTAAATGATCCT
1 AATAAAATCCTAAAATT-AATGATCCT
* * * *
79296386 AATAATGATCTTAATATTAATTATCCT
1 AATAA-AATCCTAAAATTAATGATCCT
79296413 AATATAAAT
1 AATA-AAAT
79296422 AAAATGGAGT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
27 19 0.66
28 10 0.34
ACGTcount: A:0.49, C:0.11, G:0.03, T:0.37
Consensus pattern (26 bp):
AATAAAATCCTAAAATTAATGATCCT
Found at i:79299687 original size:41 final size:41
Alignment explanation
Indices: 79299642--79299725 Score: 159
Period size: 41 Copynumber: 2.0 Consensus size: 41
79299632 CAGCCAGGTG
79299642 TTTTAATAAATCTAGGACACAACTTAAGGTTGTAAGCAAAA
1 TTTTAATAAATCTAGGACACAACTTAAGGTTGTAAGCAAAA
*
79299683 TTTTAATAAGTCTAGGACACAACTTAAGGTTGTAAGCAAAA
1 TTTTAATAAATCTAGGACACAACTTAAGGTTGTAAGCAAAA
79299724 TT
1 TT
79299726 GAGTGTTTAC
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.31
Consensus pattern (41 bp):
TTTTAATAAATCTAGGACACAACTTAAGGTTGTAAGCAAAA
Found at i:79302785 original size:20 final size:21
Alignment explanation
Indices: 79302728--79302785 Score: 68
Period size: 21 Copynumber: 2.8 Consensus size: 21
79302718 TATTTTTGCA
79302728 ATTATTTTAAATACATTAAATT
1 ATTATTTTAAATA-ATTAAATT
79302750 A--ATTTATAATATAATTAAATT
1 ATTATTT-TAA-ATAATTAAATT
79302771 ATTATTTT-AATAATT
1 ATTATTTTAAATAATT
79302786 GAATAGGATA
Statistics
Matches: 32, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
20 10 0.31
21 13 0.41
22 5 0.16
23 4 0.12
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.52
Consensus pattern (21 bp):
ATTATTTTAAATAATTAAATT
Found at i:79304219 original size:3 final size:3
Alignment explanation
Indices: 79304211--79304251 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
79304201 CATGACCCAA
79304211 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
79304252 ATTCCATGAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:79307074 original size:31 final size:33
Alignment explanation
Indices: 79307036--79307108 Score: 105
Period size: 31 Copynumber: 2.3 Consensus size: 33
79307026 CTAATATAAT
*
79307036 ATTTGGTACCTGAACTTGACA-CTTTTT-CCTA
1 ATTTGGTACCTAAACTTGACATCTTTTTCCCTA
* *
79307067 ATTTGGTACCTAAACTTGGCATTTTTTTCCCTA
1 ATTTGGTACCTAAACTTGACATCTTTTTCCCTA
79307100 ATTTGGTAC
1 ATTTGGTAC
79307109 TTAAGCTTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
31 19 0.51
32 5 0.14
33 13 0.35
ACGTcount: A:0.22, C:0.21, G:0.14, T:0.44
Consensus pattern (33 bp):
ATTTGGTACCTAAACTTGACATCTTTTTCCCTA
Found at i:79307328 original size:31 final size:30
Alignment explanation
Indices: 79307293--79307420 Score: 80
Period size: 31 Copynumber: 4.3 Consensus size: 30
79307283 AAAGATTAGC
79307293 TACCAAATTAGGAAAAAGAGTCAAGTTCAGG
1 TACCAAATTA-GAAAAAGAGTCAAGTTCAGG
* **** ** * *
79307324 TACCAAGTTA-AACCCCA-AAAAGTTTAAG
1 TACCAAATTAGAAAAAGAGTCAAGTTCAGG
* * ** *
79307352 TACCAACTTAAAAAAAGTCTCAAGTTTAGG
1 TACCAAATTAGAAAAAGAGTCAAGTTCAGG
* *
79307382 TGCCAAATTAGGAAAAAGTGTCAAGTTCAGG
1 TACCAAATTA-GAAAAAGAGTCAAGTTCAGG
79307413 TACCAAAT
1 TACCAAAT
79307421 GTTATATTAA
Statistics
Matches: 70, Mismatches: 24, Indels: 6
0.70 0.24 0.06
Matches are distributed among these distances:
28 16 0.23
29 5 0.07
30 16 0.23
31 33 0.47
ACGTcount: A:0.44, C:0.16, G:0.17, T:0.23
Consensus pattern (30 bp):
TACCAAATTAGAAAAAGAGTCAAGTTCAGG
Found at i:79307379 original size:30 final size:31
Alignment explanation
Indices: 79307343--79307420 Score: 95
Period size: 31 Copynumber: 2.5 Consensus size: 31
79307333 AAACCCCAAA
* *
79307343 AAGTTTAAGTACCAACTTA-AAAAAAGTCTC
1 AAGTTTAGGTACCAAATTAGAAAAAAGTCTC
* * *
79307373 AAGTTTAGGTGCCAAATTAGGAAAAAGTGTC
1 AAGTTTAGGTACCAAATTAGAAAAAAGTCTC
*
79307404 AAGTTCAGGTACCAAAT
1 AAGTTTAGGTACCAAAT
79307421 GTTATATTAA
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
30 16 0.40
31 24 0.60
ACGTcount: A:0.42, C:0.14, G:0.18, T:0.26
Consensus pattern (31 bp):
AAGTTTAGGTACCAAATTAGAAAAAAGTCTC
Found at i:79310841 original size:19 final size:19
Alignment explanation
Indices: 79310797--79310834 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
79310787 TAGAAGGAGT
79310797 AATCAAGGATCAAATTAAA
1 AATCAAGGATCAAATTAAA
79310816 AATCAAGGATCAAATTAAA
1 AATCAAGGATCAAATTAAA
79310835 CTCCAAGCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.58, C:0.11, G:0.11, T:0.21
Consensus pattern (19 bp):
AATCAAGGATCAAATTAAA
Found at i:79317781 original size:26 final size:26
Alignment explanation
Indices: 79317698--79317832 Score: 181
Period size: 26 Copynumber: 5.3 Consensus size: 26
79317688 CTGGAGGCCT
79317698 AGCCTCTTTT-AAT-AACTGGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
* * *
79317722 AGCCCTCTT-GATAAATTGGGGCA-A
1 AGCCCTTTTCAATAAACTGGGGCATA
79317746 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
*
79317772 AGCCCTTTTCAATAAATTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
*
79317798 AGCCCTTTTCAATAAACTGGGGCGTA
1 AGCCCTTTTCAATAAACTGGGGCATA
79317824 AGCCCTTTT
1 AGCCCTTTT
79317833 GCACTTCCTC
Statistics
Matches: 99, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
23 6 0.06
24 22 0.22
25 12 0.12
26 59 0.60
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:79317948 original size:20 final size:20
Alignment explanation
Indices: 79317882--79317938 Score: 96
Period size: 20 Copynumber: 2.9 Consensus size: 20
79317872 TTATGAATAC
*
79317882 ATCATGTGCATTTCATACAT
1 ATCATGTGCATATCATACAT
79317902 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
79317922 GTCATGTGCATATCATA
1 ATCATGTGCATATCATA
79317939 TCAACCATGT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.37
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:79336056 original size:26 final size:26
Alignment explanation
Indices: 79335972--79336062 Score: 85
Period size: 26 Copynumber: 3.5 Consensus size: 26
79335962 ACTAATTTTC
79335972 TCAAAATTTTA-CAGCGGATAAAATCG
1 TCAAAATTTTACCAGC-GATAAAATCG
** * * * * *
79335998 TTGAAATTTTACCGGGGGTACAATTG
1 TCAAAATTTTACCAGCGATAAAATCG
* *
79336024 TCGAAATTTTACCAGCGATAAAATCA
1 TCAAAATTTTACCAGCGATAAAATCG
79336050 TCAAAATTTTACC
1 TCAAAATTTTACC
79336063 GGAGTAAAAT
Statistics
Matches: 49, Mismatches: 15, Indels: 2
0.74 0.23 0.03
Matches are distributed among these distances:
26 47 0.96
27 2 0.04
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.31
Consensus pattern (26 bp):
TCAAAATTTTACCAGCGATAAAATCG
Found at i:79336707 original size:52 final size:52
Alignment explanation
Indices: 79336646--79336749 Score: 199
Period size: 52 Copynumber: 2.0 Consensus size: 52
79336636 AGTTAGGAAC
79336646 AAAGAACGTCCGCTAAGCTAAAAACATAGGTATGAATTTGGTTAAAGTTTAT
1 AAAGAACGTCCGCTAAGCTAAAAACATAGGTATGAATTTGGTTAAAGTTTAT
*
79336698 AAAGAACGTCTGCTAAGCTAAAAACATAGGTATGAATTTGGTTAAAGTTTAT
1 AAAGAACGTCCGCTAAGCTAAAAACATAGGTATGAATTTGGTTAAAGTTTAT
79336750 TGCTATAAAT
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.40, C:0.11, G:0.19, T:0.30
Consensus pattern (52 bp):
AAAGAACGTCCGCTAAGCTAAAAACATAGGTATGAATTTGGTTAAAGTTTAT
Found at i:79349211 original size:5 final size:5
Alignment explanation
Indices: 79349201--79349240 Score: 53
Period size: 5 Copynumber: 7.8 Consensus size: 5
79349191 AAAATAAATC
* *
79349201 TTATT TTATT TTATT TTATT TATTTT TTATT TAATT TTAT
1 TTATT TTATT TTATT TTATT T-TATT TTATT TTATT TTAT
79349241 GTTAAATTAG
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
5 26 0.87
6 4 0.13
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.78
Consensus pattern (5 bp):
TTATT
Found at i:79349245 original size:11 final size:10
Alignment explanation
Indices: 79349203--79349245 Score: 50
Period size: 10 Copynumber: 4.1 Consensus size: 10
79349193 AATAAATCTT
*
79349203 ATTTTATTTT
1 ATTTTATTTA
79349213 ATTTTATTTA
1 ATTTTATTTA
*
79349223 TTTTTTATTTA
1 -ATTTTATTTA
79349234 ATTTTATGTTA
1 ATTTTAT-TTA
79349245 A
1 A
79349246 ATTAGTTAAG
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
10 15 0.54
11 13 0.46
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.72
Consensus pattern (10 bp):
ATTTTATTTA
Found at i:79350116 original size:19 final size:18
Alignment explanation
Indices: 79350078--79350116 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
79350068 ACAAAAATAC
* *
79350078 AAATTTATTTCCCAATTT
1 AAATTTAGTTCCAAATTT
79350096 AAATTTAGTTCCAATATTT
1 AAATTTAGTTCCAA-ATTT
79350115 AA
1 AA
79350117 TTGTCTATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.38, C:0.13, G:0.03, T:0.46
Consensus pattern (18 bp):
AAATTTAGTTCCAAATTT
Found at i:79355565 original size:15 final size:15
Alignment explanation
Indices: 79355532--79355611 Score: 99
Period size: 15 Copynumber: 5.4 Consensus size: 15
79355522 CAAAGATAAC
*
79355532 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
*
79355546 AAGAAATCCAAAATA
1 AAGAAATCCAGAATA
* *
79355561 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
79355576 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
79355591 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
79355606 AAGAAA
1 AAGAAA
79355612 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 10, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
14 8 0.15
15 47 0.85
ACGTcount: A:0.60, C:0.14, G:0.16, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:79355620 original size:15 final size:15
Alignment explanation
Indices: 79355543--79355620 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
79355533 AGAAAACCGA
*
79355543 ATAAAGAAATCCAAA
1 ATAAAGAAATCCAAG
* *
79355558 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
79355572 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
79355587 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
79355603 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
79355618 ATA
1 ATA
79355621 CGATACTATG
Statistics
Matches: 51, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
14 3 0.06
15 45 0.88
16 3 0.06
ACGTcount: A:0.58, C:0.15, G:0.15, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:79358391 original size:20 final size:21
Alignment explanation
Indices: 79358368--79358417 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 21
79358358 CCTATTGTAC
79358368 AAATTTG-TAATAAAACTA-CA
1 AAATTTGCTAATAAAA-TACCA
*
79358388 AAATTTGCTATTAAAATACTCA
1 AAATTTGCTAATAAAATAC-CA
79358410 AAATTTGC
1 AAATTTGC
79358418 ATGAATTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
20 9 0.35
21 7 0.27
22 10 0.38
ACGTcount: A:0.48, C:0.12, G:0.06, T:0.34
Consensus pattern (21 bp):
AAATTTGCTAATAAAATACCA
Found at i:79360303 original size:19 final size:19
Alignment explanation
Indices: 79360254--79360303 Score: 50
Period size: 19 Copynumber: 2.6 Consensus size: 19
79360244 ACTCATTAAT
79360254 CCATTTACATTATAACATTA
1 CCATTT-CATTATAACATTA
*
79360274 -CATCTCAATTATGAAC-TTA
1 CCATTTC-ATTAT-AACATTA
79360293 CCATTTCATTA
1 CCATTTCATTA
79360304 CATCTCATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 7
0.74 0.06 0.21
Matches are distributed among these distances:
18 1 0.04
19 16 0.64
20 8 0.32
ACGTcount: A:0.36, C:0.22, G:0.02, T:0.40
Consensus pattern (19 bp):
CCATTTCATTATAACATTA
Found at i:79360918 original size:20 final size:19
Alignment explanation
Indices: 79360873--79360925 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
79360863 AGGGGCATCA
79360873 AAGTGCAATCAGGAGCACG
1 AAGTGCAATCAGGAGCACG
*
79360892 AATGTGCGATCAGG-GACACCG
1 AA-GTGCAATCAGGAG-CA-CG
*
79360913 AAGTGCAAACAGG
1 AAGTGCAATCAGG
79360926 GGCATATATG
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
19 3 0.11
20 21 0.75
21 4 0.14
ACGTcount: A:0.36, C:0.21, G:0.32, T:0.11
Consensus pattern (19 bp):
AAGTGCAATCAGGAGCACG
Found at i:79360977 original size:40 final size:39
Alignment explanation
Indices: 79360933--79361051 Score: 123
Period size: 40 Copynumber: 3.0 Consensus size: 39
79360923 AGGGGCATAT
** *
79360933 ATGTGCATTTAGGGGTATCGAGGTACAATCAGGGGCACTG
1 ATGTGCATACAGGGGTATCGAAGTACAAT-AGGGGCACTG
* * *
79360973 ATGTGC-TAACAGGGTTACCGAAGTACAAATAGGGGCATTG
1 ATGTGCAT-ACAGGGGTATCGAAGTAC-AATAGGGGCACTG
* *
79361013 ATGTGCAAACAAGGGTATCGAAGTACAATTAGGGGCACT
1 ATGTGCATACAGGGGTATCGAAGTACAA-TAGGGGCACT
79361052 TCTTCATTTC
Statistics
Matches: 64, Mismatches: 11, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
39 3 0.05
40 58 0.91
41 3 0.05
ACGTcount: A:0.31, C:0.15, G:0.31, T:0.23
Consensus pattern (39 bp):
ATGTGCATACAGGGGTATCGAAGTACAATAGGGGCACTG
Found at i:79361029 original size:80 final size:81
Alignment explanation
Indices: 79360873--79361051 Score: 202
Period size: 80 Copynumber: 2.2 Consensus size: 81
79360863 AGGGGCATCA
* * * *
79360873 AAGTGCAATCAGGAGCAC-GAATGTGCGATCAGGGACACCGAAGTGCAAACAGGGGCATATATGT
1 AAGTACAATCAGGGGCACTGAATGTGCGAACAGGGACACCGAAGTACAAACAGGGGCATATATGT
*** *
79360937 GCATTTAGGGGTATCG
66 GCAAACAAGGGTATCG
* * ** *
79360953 AGGTACAATCAGGGGCACTG-ATGTGCTAACAGGGTTACCGAAGTACAAATAGGGGCAT-TGATG
1 AAGTACAATCAGGGGCACTGAATGTGCGAACAGGGACACCGAAGTACAAACAGGGGCATAT-ATG
79361016 TGCAAACAAGGGTATCG
65 TGCAAACAAGGGTATCG
*
79361033 AAGTACAATTAGGGGCACT
1 AAGTACAATCAGGGGCACT
79361052 TCTTCATTTC
Statistics
Matches: 82, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
79 1 0.01
80 80 0.98
81 1 0.01
ACGTcount: A:0.32, C:0.17, G:0.31, T:0.20
Consensus pattern (81 bp):
AAGTACAATCAGGGGCACTGAATGTGCGAACAGGGACACCGAAGTACAAACAGGGGCATATATGT
GCAAACAAGGGTATCG
Found at i:79361677 original size:18 final size:18
Alignment explanation
Indices: 79361656--79361693 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
79361646 TAAAATTACT
79361656 TAACAA-AATATTTTTAAA
1 TAACAACAATA-TTTTAAA
79361674 TAACAACTAATATTTTAAA
1 TAACAAC-AATATTTTAAA
79361693 T
1 T
79361694 TCATCATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 6 0.33
19 8 0.44
20 4 0.22
ACGTcount: A:0.53, C:0.08, G:0.00, T:0.39
Consensus pattern (18 bp):
TAACAACAATATTTTAAA
Found at i:79374310 original size:64 final size:64
Alignment explanation
Indices: 79374230--79374413 Score: 162
Period size: 67 Copynumber: 2.8 Consensus size: 64
79374220 ACACATTATG
* *
79374230 ATGTAGCTAGGTCGCATTGGTGATACTATGTGTACACCATGTAGACAAGAGAGCAACGGGATAT
1 ATGTAGCTAGGTCGCATTGGTGATACTATGTGTACACCATGTAGACAAGAGAGCAACGAGATAA
* * * * * *
79374294 ATGTAGCTAGGTCGCA-TGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGA
1 ATGTAGCTAGGTCGCATTG-GTGATACTA--TG-TGTACACCATGTAGACAAGAGAGCAACGAGA
79374358 TAA
62 TAA
* * * *
79374361 AT-TGGCTAGGTCACATGGGT-AGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATTGGTGA-TACT-ATGTGTACACCATGTAG-ACAAGAGAGC
79374414 CGAACATATG
Statistics
Matches: 95, Mismatches: 17, Indels: 17
0.74 0.13 0.13
Matches are distributed among these distances:
62 1 0.01
63 21 0.22
64 23 0.24
66 17 0.18
67 33 0.35
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATTGGTGATACTATGTGTACACCATGTAGACAAGAGAGCAACGAGATAA
Found at i:79375430 original size:15 final size:16
Alignment explanation
Indices: 79375412--79375441 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
79375402 ATGGAAACTA
79375412 TGGTAT-ATGAAATAT
1 TGGTATAATGAAATAT
79375427 TGGTATAATGAAATA
1 TGGTATAATGAAATA
79375442 AATGATATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.43, C:0.00, G:0.20, T:0.37
Consensus pattern (16 bp):
TGGTATAATGAAATAT
Found at i:79377793 original size:29 final size:29
Alignment explanation
Indices: 79377749--79377808 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 29
79377739 CTAAGGACAA
79377749 ACCCTAGGGATGTGTTATGCCG-AGACTCT
1 ACCCTAGGGATGTGTTATG-CGAAGACTCT
* * *
79377778 ACCCTGGGGATTTGTTTTGCGAAGACTCT
1 ACCCTAGGGATGTGTTATGCGAAGACTCT
79377807 AC
1 AC
79377809 TAGCTAGAGA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
28 2 0.07
29 25 0.93
ACGTcount: A:0.20, C:0.23, G:0.27, T:0.30
Consensus pattern (29 bp):
ACCCTAGGGATGTGTTATGCGAAGACTCT
Found at i:79378288 original size:22 final size:22
Alignment explanation
Indices: 79378263--79378304 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
79378253 TAGTCATATA
79378263 ATAAATTATTAATATAATAAGT
1 ATAAATTATTAATATAATAAGT
* * *
79378285 ATAATTTATTATTTTAATAA
1 ATAAATTATTAATATAATAA
79378305 ATTATTTAAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (22 bp):
ATAAATTATTAATATAATAAGT
Found at i:79378358 original size:15 final size:16
Alignment explanation
Indices: 79378331--79378361 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
79378321 ATTTTATTTT
79378331 AATAATAAATTTTAAA
1 AATAATAAATTTTAAA
79378347 AATAAT-AATTTTAAA
1 AATAATAAATTTTAAA
79378362 TGATATTGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
AATAATAAATTTTAAA
Found at i:79378419 original size:15 final size:15
Alignment explanation
Indices: 79378399--79378456 Score: 53
Period size: 15 Copynumber: 3.6 Consensus size: 15
79378389 ATTCAATATT
79378399 AATATTTTAATAATA
1 AATATTTTAATAATA
*
79378414 AATATTTATTACAATTATA
1 AATA-TT-TT--AATAATA
*
79378433 AATATATTAATAATA
1 AATATTTTAATAATA
*
79378448 AATGTTTTA
1 AATATTTTA
79378457 TAGTATAAAG
Statistics
Matches: 34, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 17 0.50
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.29
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:79378919 original size:14 final size:14
Alignment explanation
Indices: 79378897--79378935 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
79378887 TTCTAGAAAT
*
79378897 AAATTATTTTCCAG
1 AAATCATTTTCCAG
*
79378911 AAATCATTTTCCGG
1 AAATCATTTTCCAG
*
79378925 AAGTCATTTTC
1 AAATCATTTTC
79378936 AGTGAAACAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.31, C:0.18, G:0.10, T:0.41
Consensus pattern (14 bp):
AAATCATTTTCCAG
Found at i:79388971 original size:28 final size:28
Alignment explanation
Indices: 79388919--79388972 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
79388909 ATACTGTCGA
* * *
79388919 ATACTCAATGTCTCGCACACTAAGTGCC
1 ATACTCAATATCTCACACACAAAGTGCC
*
79388947 ATACTCAATATCTCACACGCAAAGTG
1 ATACTCAATATCTCACACACAAAGTG
79388973 TCGTACGTAG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.33, C:0.30, G:0.13, T:0.24
Consensus pattern (28 bp):
ATACTCAATATCTCACACACAAAGTGCC
Found at i:79389092 original size:40 final size:40
Alignment explanation
Indices: 79388980--79389093 Score: 183
Period size: 40 Copynumber: 2.9 Consensus size: 40
79388970 GTGTCGTACG
* * *
79388980 TAGCCGAAGCTATCTCAAATGGCACACTAAGTACCATATA
1 TAGCCGAAGCTATCTCGAATCGCACACTAAGTGCCATATA
79389020 TAGCCGAAGCTATCTCGAATCGCACACTAAGTGCCATATA
1 TAGCCGAAGCTATCTCGAATCGCACACTAAGTGCCATATA
* *
79389060 TAGCCGAAGCTATGTCGTATCGCACACTAAGTGC
1 TAGCCGAAGCTATCTCGAATCGCACACTAAGTGC
79389094 TACAAATAAC
Statistics
Matches: 69, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 69 1.00
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.23
Consensus pattern (40 bp):
TAGCCGAAGCTATCTCGAATCGCACACTAAGTGCCATATA
Found at i:79390059 original size:33 final size:34
Alignment explanation
Indices: 79390017--79390083 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
79390007 CAATTTAATA
79390017 AACCAACCAATCGAT-AAATTAACTCACAAAATT
1 AACCAACCAATCGATAAAATTAACTCACAAAATT
79390050 AACCAACCAATCGATAAAATTAACTCACAAAATT
1 AACCAACCAATCGATAAAATTAACTCACAAAATT
79390084 TTGACACATA
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
33 15 0.45
34 18 0.55
ACGTcount: A:0.52, C:0.24, G:0.03, T:0.21
Consensus pattern (34 bp):
AACCAACCAATCGATAAAATTAACTCACAAAATT
Found at i:79400792 original size:17 final size:17
Alignment explanation
Indices: 79400772--79400805 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
79400762 TAAATAAGGG
79400772 ATGAAGTAACATAAATA
1 ATGAAGTAACATAAATA
*
79400789 ATGAAGTGACATAAATA
1 ATGAAGTAACATAAATA
79400806 TTCACTCATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.56, C:0.06, G:0.15, T:0.24
Consensus pattern (17 bp):
ATGAAGTAACATAAATA
Found at i:79402177 original size:34 final size:34
Alignment explanation
Indices: 79402125--79402189 Score: 94
Period size: 34 Copynumber: 1.9 Consensus size: 34
79402115 GTCACCTAGA
*
79402125 TTATGCTTCTTAGCACCTCTTCCTATCAATGAGT
1 TTATCCTTCTTAGCACCTCTTCCTATCAATGAGT
* * *
79402159 TTATCCTTCTTAGTACCTCTTCTTGTCAATG
1 TTATCCTTCTTAGCACCTCTTCCTATCAATG
79402190 GGTTCTAACT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.18, C:0.26, G:0.11, T:0.45
Consensus pattern (34 bp):
TTATCCTTCTTAGCACCTCTTCCTATCAATGAGT
Found at i:79402880 original size:62 final size:62
Alignment explanation
Indices: 79402779--79402954 Score: 156
Period size: 62 Copynumber: 2.7 Consensus size: 62
79402769 AGCTATGGTT
*
79402779 TTACACCTTATAATCCTCATATTTACTATCCCAGCGGACTCTATTAGTTTTCATAGTGAGTC
1 TTACACCTTATAATCCTCATATTTACTATCCCAGCGGACTCTATTAGTTGTCATAGTGAGTC
* * * * * * * *
79402841 TTACACCTTATAATCC-CTGTGTTTACTGTCTCTGTGGACTCTATTGGTTGTCATAGCCGAGCTA
1 TTACACCTTATAATCCTC-ATATTTACTATCCCAGCGGACTCTATTAGTTGTCATA---GTG--A
79402905 TGTTC
60 -G-TC
* * * *
79402910 TTACACCTTATAATCCCCATGTTTACTATCCCAACAGACTCTATT
1 TTACACCTTATAATCCTCATATTTACTATCCCAGCGGACTCTATT
79402955 GGTTCTTATA
Statistics
Matches: 89, Mismatches: 16, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
61 1 0.01
62 45 0.51
65 2 0.02
67 1 0.01
68 1 0.01
69 38 0.43
70 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.12, T:0.39
Consensus pattern (62 bp):
TTACACCTTATAATCCTCATATTTACTATCCCAGCGGACTCTATTAGTTGTCATAGTGAGTC
Found at i:79402971 original size:69 final size:69
Alignment explanation
Indices: 79402838--79402981 Score: 164
Period size: 69 Copynumber: 2.1 Consensus size: 69
79402828 TTCATAGTGA
** * * **** *
79402838 GTCTTACACCTTATAATCCCTGTGTTTACTGTCTCTGTGGACTCTATTGGTTGTCATAGCCGAGC
1 GTCTTACACCTTATAATCCCCATGTTTACTATCCCAACAGACTCTATTGGTTCTCATAGCCGAGC
*
79402903 TATG
66 AATG
* *
79402907 TTCTTACACCTTATAATCCCCATGTTTACTATCCCAACAGACTCTATTGGTTCTTATA-CTCGAG
1 GTCTTACACCTTATAATCCCCATGTTTACTATCCCAACAGACTCTATTGGTTCTCATAGC-CGAG
79402971 CAATG
65 CAATG
79402976 GTCTTA
1 GTCTTA
79402982 TATATTAAAC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
68 1 0.02
69 60 0.98
ACGTcount: A:0.22, C:0.25, G:0.15, T:0.38
Consensus pattern (69 bp):
GTCTTACACCTTATAATCCCCATGTTTACTATCCCAACAGACTCTATTGGTTCTCATAGCCGAGC
AATG
Found at i:79405787 original size:48 final size:48
Alignment explanation
Indices: 79405716--79405812 Score: 194
Period size: 48 Copynumber: 2.0 Consensus size: 48
79405706 GAGAATTAGA
79405716 CTGGTTGAAGATGGTAACTTTATGGTGAAGTGCTTCATAAAACTTCGT
1 CTGGTTGAAGATGGTAACTTTATGGTGAAGTGCTTCATAAAACTTCGT
79405764 CTGGTTGAAGATGGTAACTTTATGGTGAAGTGCTTCATAAAACTTCGT
1 CTGGTTGAAGATGGTAACTTTATGGTGAAGTGCTTCATAAAACTTCGT
79405812 C
1 C
79405813 AACATTGTGG
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.27, C:0.13, G:0.25, T:0.35
Consensus pattern (48 bp):
CTGGTTGAAGATGGTAACTTTATGGTGAAGTGCTTCATAAAACTTCGT
Found at i:79420333 original size:27 final size:27
Alignment explanation
Indices: 79420260--79420333 Score: 73
Period size: 27 Copynumber: 2.8 Consensus size: 27
79420250 TTATGAAAAT
* *
79420260 TTATTATAAAATTA-ATTATAATTTAA
1 TTATTTTATAATTATATTATAATTTAA
* *
79420286 -TATGTTAATAATT-TAAGTATAATTTAA
1 TTAT-TTTATAATTAT-ATTATAATTTAA
79420313 TTATTTTATAATTATATTATA
1 TTATTTTATAATTATATTATA
79420334 TTTTTCGATA
Statistics
Matches: 37, Mismatches: 6, Indels: 9
0.71 0.12 0.17
Matches are distributed among these distances:
25 3 0.08
26 6 0.16
27 24 0.65
28 4 0.11
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (27 bp):
TTATTTTATAATTATATTATAATTTAA
Found at i:79424214 original size:50 final size:49
Alignment explanation
Indices: 79424047--79424271 Score: 306
Period size: 49 Copynumber: 4.5 Consensus size: 49
79424037 CTGGTACGCA
* * *
79424047 TAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
79424096 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
** * *
79424145 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCCGGTACACG
* * * * *
79424195 TAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAATTATCCGGTACACG
*
79424246 TAGTAGCCTACACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
79424272 TGCGACCTCA
Statistics
Matches: 157, Mismatches: 16, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
49 79 0.50
50 43 0.27
51 34 0.22
52 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
Found at i:79424218 original size:99 final size:100
Alignment explanation
Indices: 79424034--79424278 Score: 323
Period size: 99 Copynumber: 2.5 Consensus size: 100
79424024 TAGCCAAAGC
* * * * ** *
79424034 TATCTGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACACGTAG
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAACCATCCGATACACGTAG
79424099 TAGCCTGCACTTAGTACTACACACGTGA-C-CAAT
66 TAGCCTGCACTTAGTACTACACACGTGATCACAAT
* * *
79424132 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTA
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC-AACCATCCGATACACGTA
*
79424197 GTAGCCTGCACTTAGTACTACACACGTGATCACAGT
65 GTAGCCTGCACTTAGTACTACACACGTGATCACAAT
* * * * *
79424233 TTTCGGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACC
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC
79424279 TCACAATAGA
Statistics
Matches: 126, Mismatches: 18, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
98 40 0.32
99 43 0.34
100 1 0.01
101 42 0.33
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (100 bp):
TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAACCATCCGATACACGTAG
TAGCCTGCACTTAGTACTACACACGTGATCACAAT
Found at i:79425964 original size:30 final size:28
Alignment explanation
Indices: 79425921--79425977 Score: 78
Period size: 30 Copynumber: 2.0 Consensus size: 28
79425911 AAGATAACAA
*
79425921 GAAAACCGAATAAAAAAATCCAAGATAG
1 GAAAACCGAATAAAAAAACCCAAGATAG
*
79425949 GAAAACCCAGAATAAAGAAACCCAAGATA
1 GAAAA-CC-GAATAAAAAAACCCAAGATA
79425978 CGATACTATG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 5 0.20
29 2 0.08
30 18 0.72
ACGTcount: A:0.60, C:0.18, G:0.14, T:0.09
Consensus pattern (28 bp):
GAAAACCGAATAAAAAAACCCAAGATAG
Found at i:79438828 original size:17 final size:17
Alignment explanation
Indices: 79438791--79438829 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
79438781 TTATTTATTC
*
79438791 TATTGTTGGAATTGAAT
1 TATTGTTGGAATTGAAA
79438808 TATTGTTGGAATT-ATAA
1 TATTGTTGGAATTGA-AA
79438825 TATTG
1 TATTG
79438830 AATTGGATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 1 0.05
17 19 0.95
ACGTcount: A:0.31, C:0.00, G:0.21, T:0.49
Consensus pattern (17 bp):
TATTGTTGGAATTGAAA
Found at i:79439050 original size:19 final size:21
Alignment explanation
Indices: 79438973--79439098 Score: 139
Period size: 21 Copynumber: 6.1 Consensus size: 21
79438963 TTACTTTATG
* * *
79438973 TTCATCTCTTATGAGCTTCTG
1 TTCAACTCTTACGAGCTTCTA
* *
79438994 TTCAACTCTTATGAGTTTCTA
1 TTCAACTCTTACGAGCTTCTA
* * *
79439015 TTTAGCTCTTACGAGCTTCTG
1 TTCAACTCTTACGAGCTTCTA
79439036 TTCAACT-TT-CGAGCTTCTA
1 TTCAACTCTTACGAGCTTCTA
*
79439055 TTCAACTCTTATGAGCTTCTA
1 TTCAACTCTTACGAGCTTCTA
* *
79439076 TTCAGCTCTTACAAGCTTCTA
1 TTCAACTCTTACGAGCTTCTA
79439097 TT
1 TT
79439099 GGTGTATTCA
Statistics
Matches: 88, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
19 16 0.18
20 4 0.05
21 68 0.77
ACGTcount: A:0.20, C:0.24, G:0.12, T:0.44
Consensus pattern (21 bp):
TTCAACTCTTACGAGCTTCTA
Found at i:79443820 original size:44 final size:47
Alignment explanation
Indices: 79443761--79443884 Score: 148
Period size: 44 Copynumber: 2.7 Consensus size: 47
79443751 TATACGTGTT
79443761 GATGCATGTCCCAGACATGTCTTACACTAGCACGAAGC-TT-A-GCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCACGAAGCATTGAGGCC
* * * * * *
79443805 GATGCATGTCTCAGACACGTCTTACACTGGCTA-GCATCATTGAGGCT
1 GATGCATGTCCCAGACATGTCTTACACTAGC-ACGAAGCATTGAGGCC
*
79443852 GATGCATGTCCCAGACATGTCTTACAATAGCAC
1 GATGCATGTCCCAGACATGTCTTACACTAGCAC
79443885 TCGTCTCTAT
Statistics
Matches: 65, Mismatches: 10, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
44 31 0.48
45 3 0.05
46 2 0.03
47 29 0.45
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (47 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCACGAAGCATTGAGGCC
Found at i:79443907 original size:47 final size:47
Alignment explanation
Indices: 79443661--79444021 Score: 190
Period size: 47 Copynumber: 7.6 Consensus size: 47
79443651 GTTAAGTTGC
* * * * *
79443661 CGATGCCATGTCTCAGACATGGTCTTACACTGGCTA-TCTTCATCGAGGT
1 CGATG-CATGTCCCAGACATGGTCTTACACTAGC-ACTCATC-TCTATGT
* * ** * *
79443710 CGATACCATGTCCCAGACATGGTCTTACACTAGCTCTTGTGTATACGTGT
1 CGAT-GCATGTCCCAGACATGGTCTTACACTAGCACTCATCTCTA--TGT
* ** * *
79443760 TGATGCATGTCCCAGACAT-GTCTTACACTAGCACGAAGCT-TA-GC
1 CGATGCATGTCCCAGACATGGTCTTACACTAGCACTCATCTCTATGT
* * * * *
79443804 CGATGCATGTCTCAGACA-CGTCTTACACTGGCTAGCATCAT-T-GA-GG
1 CGATGCATGTCCCAGACATGGTCTTACACTAGC-A-C-TCATCTCTATGT
* *
79443850 CTGATGCATGTCCCAGACAT-GTCTTACAATAGCACTCGTCTCTATGT
1 C-GATGCATGTCCCAGACATGGTCTTACACTAGCACTCATCTCTATGT
* * * * ** * *
79443897 CGATGCCATGTCTCAAATATGGTCTTACACTGGCTA-TCAT-AATGTGG
1 CGATG-CATGTCCCAGACATGGTCTTACACTAGC-ACTCATCTCTATGT
* * *
79443944 CAGATGCATGTCCCAGACAT-GCCTTACACTAGCCCTCATCTCAATG-
1 C-GATGCATGTCCCAGACATGGTCTTACACTAGCACTCATCTCTATGT
79443990 CAGATGCCATGTCCCAGACATGGTCTTACACT
1 C-GATG-CATGTCCCAGACATGGTCTTACACT
79444022 GGCTCTCACA
Statistics
Matches: 237, Mismatches: 54, Indels: 43
0.71 0.16 0.13
Matches are distributed among these distances:
44 32 0.14
45 3 0.01
46 32 0.14
47 74 0.31
48 44 0.19
49 47 0.20
50 5 0.02
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (47 bp):
CGATGCATGTCCCAGACATGGTCTTACACTAGCACTCATCTCTATGT
Found at i:79443970 original size:94 final size:94
Alignment explanation
Indices: 79443761--79444025 Score: 317
Period size: 94 Copynumber: 2.8 Consensus size: 94
79443751 TATACGTGTT
**
79443761 GATGCATGTCCCAGACATGTCTTACACTAGCACGAAG-CT-TA-GCCGATG-CATGTCTCAGACA
1 GATGCATGTCCCAGACATGTCTTACACTAGCAC-TCGTCTCTATG-CGATGCCATGTCTCAGACA
* * *
79443822 -CGTCTTACACTGGCTAGCATCATTGAGGCT
64 TGGTCTTACACTGGCTAGCATCAATGAGGCA
* * *
79443852 GATGCATGTCCCAGACATGTCTTACAATAGCACTCGTCTCTATGTCGATGCCATGTCTCAAATAT
1 GATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCTATG-CGATGCCATGTCTCAGACAT
* *
79443917 GGTCTTACACTGGCTATCAT-AATGTGGCA
65 GGTCTTACACTGGCTAGCATCAATGAGGCA
* * * * *
79443946 GATGCATGTCCCAGACATGCCTTACACTAGCCCTCATCTCAATGCAGATGCCATGTCCCAGACAT
1 GATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCTATGC-GATGCCATGTCTCAGACAT
79444011 GGTCTTACACTGGCT
65 GGTCTTACACTGGCT
79444026 CTCACATAAC
Statistics
Matches: 149, Mismatches: 19, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
90 1 0.01
91 34 0.23
92 2 0.01
93 7 0.05
94 87 0.58
95 18 0.12
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (94 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCTATGCGATGCCATGTCTCAGACATG
GTCTTACACTGGCTAGCATCAATGAGGCA
Found at i:79445545 original size:22 final size:24
Alignment explanation
Indices: 79445519--79445572 Score: 58
Period size: 24 Copynumber: 2.3 Consensus size: 24
79445509 TTATAAATTC
*
79445519 AATTTAAA-AGATATAAT-ACTAT
1 AATTTAAACAGATATAATAACAAT
* *
79445541 AATTTCAAACATATTTAATAACAAT
1 AATTT-AAACAGATATAATAACAAT
79445566 AATTTAA
1 AATTTAA
79445573 TCATAAAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
22 5 0.19
23 3 0.12
24 9 0.35
25 9 0.35
ACGTcount: A:0.54, C:0.07, G:0.02, T:0.37
Consensus pattern (24 bp):
AATTTAAACAGATATAATAACAAT
Found at i:79449743 original size:31 final size:31
Alignment explanation
Indices: 79449707--79449770 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
79449697 AAAATAATTC
79449707 ACAGCATCACCAATATGAACTAATTTCACAT
1 ACAGCATCACCAATATGAACTAATTTCACAT
79449738 ACAGCATCACCAATATGAACTAATTTCACAT
1 ACAGCATCACCAATATGAACTAATTTCACAT
79449769 AC
1 AC
79449771 CTCATCTCAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.42, C:0.27, G:0.06, T:0.25
Consensus pattern (31 bp):
ACAGCATCACCAATATGAACTAATTTCACAT
Found at i:79451515 original size:49 final size:49
Alignment explanation
Indices: 79451337--79451517 Score: 247
Period size: 49 Copynumber: 3.7 Consensus size: 49
79451327 TCTATTGTGA
* * * *
79451337 GGTCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACTGAATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * * *
79451386 GGTCGCATGTGTA-TACTAAGTGCAGGCTACTATGCGTACCCGATAACTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TT
* *
79451435 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
79451485 GGTCACATGTGTAGTACTAAGTGCAGGCTACTA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTA
79451518 TGCGTACCAG
Statistics
Matches: 113, Mismatches: 16, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
48 27 0.24
49 44 0.39
50 12 0.11
51 30 0.27
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
Found at i:79451563 original size:100 final size:99
Alignment explanation
Indices: 79451343--79451530 Score: 277
Period size: 99 Copynumber: 1.9 Consensus size: 99
79451333 GTGAGGTCAC
* * * * *
79451343 GTGTGTAGTACTAAGTGCAAGCTACTACGTGTACTGAATAATTGGTCGCATGTGTATACTAAGTG
1 GTGTGTAGAAATAAGTGCAGGCTACTACGTGTACCGAATAATTGGTCACATGTGTATACTAAGTG
* *
79451408 CAGGCTACTATGCGTACCCGATAACTTCGATCAC
66 CAGGCTACTATGCGTACCAGATAACTTCGATCAA
* * *
79451442 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACATGTGTAGTACTAAGT
1 GTGTGTAGAAATAAGTGCAGGCTACTACGTGTACCGAATAATTGGTCACATGTGTA-TACTAAGT
79451507 GCAGGCTACTATGCGTACCAGATA
65 GCAGGCTACTATGCGTACCAGATA
79451531 GCTTTGGCTG
Statistics
Matches: 83, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
99 52 0.63
100 31 0.37
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (99 bp):
GTGTGTAGAAATAAGTGCAGGCTACTACGTGTACCGAATAATTGGTCACATGTGTATACTAAGTG
CAGGCTACTATGCGTACCAGATAACTTCGATCAA
Found at i:79453945 original size:46 final size:44
Alignment explanation
Indices: 79453872--79453998 Score: 132
Period size: 46 Copynumber: 2.8 Consensus size: 44
79453862 AGGTTATTCG
* * *
79453872 TGTGCCAGTGTAAGACATGTCTAGGACAGGCAT-AGATCT-TGAGA
1 TGTGCCAGTGTAAGACATGTTTGGGACAGGCATCAG--CTACGAGA
* *
79453916 TGTAAGCCAGTGTAAGACATGTTTGGGACATGCATCCGCTACGAGA
1 TGT--GCCAGTGTAAGACATGTTTGGGACAGGCATCAGCTACGAGA
*
79453962 TGTGTCAGTGTAAGACCATGTTTGGGACATGGCATCA
1 TGTGCCAGTGTAAGA-CATGTTTGGGACA-GGCATCA
79453999 ACACGGATAT
Statistics
Matches: 69, Mismatches: 8, Indels: 10
0.79 0.09 0.11
Matches are distributed among these distances:
44 14 0.20
45 15 0.22
46 39 0.57
47 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (44 bp):
TGTGCCAGTGTAAGACATGTTTGGGACAGGCATCAGCTACGAGA
Found at i:79454028 original size:94 final size:98
Alignment explanation
Indices: 79453924--79454098 Score: 234
Period size: 98 Copynumber: 1.8 Consensus size: 98
79453914 GATGTAAGCC
* *
79453924 AGTGTAAGACATGTTTGGGACAT-GCATCCG-CTACGAGAT-G-T-GTCAGTGTAAGACCATGTT
1 AGTGTAAGACATGTCTGAGACATGGCATCCGCCT-CGAGATCGATAGTCAGTGTAAGACCATGTT
*
79453984 TGGGACATGGCATCAACACGGATATGTGAGAGCT
65 TGGGACATAGCATCAACACGGATATGTGAGAGCT
* * **
79454018 AGTGTAAGACATGTCTGAGACATGGCGTCGGCCTCGATTTCGATAGTCAGTGTAAGACCATGTTT
1 AGTGTAAGACATGTCTGAGACATGGCATCCGCCTCGAGATCGATAGTCAGTGTAAGACCATGTTT
*
79454083 GGGATATAGCATCAAC
66 GGGACATAGCATCAAC
79454099 TTGATGGATG
Statistics
Matches: 68, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
94 21 0.31
95 9 0.13
96 3 0.04
97 1 0.01
98 34 0.50
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (98 bp):
AGTGTAAGACATGTCTGAGACATGGCATCCGCCTCGAGATCGATAGTCAGTGTAAGACCATGTTT
GGGACATAGCATCAACACGGATATGTGAGAGCT
Found at i:79458713 original size:54 final size:54
Alignment explanation
Indices: 79458664--79458766 Score: 143
Period size: 54 Copynumber: 1.9 Consensus size: 54
79458654 ATAGTCTGCC
* * * * * *
79458664 AAAATAGTAAACATAGGGTAGTCTGTTGGGACAGTAAACACGGGTTAGTCCACA
1 AAAAGAGTAAACACAGGGTAGTCTATCGGGACAATAAACACGGGGTAGTCCACA
*
79458718 AAAAGAGTAAACACAGGGTAGTTTATCGGGACAATAAACACGGGGTAGT
1 AAAAGAGTAAACACAGGGTAGTCTATCGGGACAATAAACACGGGGTAGT
79458767 TCGTAGGGAC
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 42 1.00
ACGTcount: A:0.39, C:0.14, G:0.27, T:0.20
Consensus pattern (54 bp):
AAAAGAGTAAACACAGGGTAGTCTATCGGGACAATAAACACGGGGTAGTCCACA
Found at i:79458775 original size:27 final size:27
Alignment explanation
Indices: 79458725--79458793 Score: 68
Period size: 27 Copynumber: 2.6 Consensus size: 27
79458715 ACAAAAAGAG
* *
79458725 TAAACACAGGGTAGTTTATCGGGACAA
1 TAAACACAGGGTAGTTCATAGGGACAA
* * **
79458752 TAAACACGGGGTAGTTCGTAGGGACCT
1 TAAACACAGGGTAGTTCATAGGGACAA
79458779 TAAACA-AGGGATAGT
1 TAAACACAGGG-TAGT
79458794 CCGACAAGAT
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
26 3 0.09
27 31 0.91
ACGTcount: A:0.35, C:0.14, G:0.29, T:0.22
Consensus pattern (27 bp):
TAAACACAGGGTAGTTCATAGGGACAA
Found at i:79459624 original size:32 final size:32
Alignment explanation
Indices: 79459587--79459653 Score: 116
Period size: 32 Copynumber: 2.1 Consensus size: 32
79459577 AATTGCTATA
* *
79459587 AGTATGCCAAACTATTATGAGAGTAGAGATTC
1 AGTATGCCAAAATATTATGAGAGTAGAGACTC
79459619 AGTATGCCAAAATATTATGAGAGTAGAGACTC
1 AGTATGCCAAAATATTATGAGAGTAGAGACTC
79459651 AGT
1 AGT
79459654 GAAGCAAAGA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.39, C:0.12, G:0.22, T:0.27
Consensus pattern (32 bp):
AGTATGCCAAAATATTATGAGAGTAGAGACTC
Found at i:79468651 original size:48 final size:48
Alignment explanation
Indices: 79468563--79468674 Score: 134
Period size: 48 Copynumber: 2.3 Consensus size: 48
79468553 TATGTGTGCT
* * * **
79468563 AGTGTAAGACATGTCTGAGACATGCATTGATCTTGAGATATTTAAGCC
1 AGTGTAAGACATGTCTGAGACATGCATCGACCTCGAGATATACAAGCC
* * * *
79468611 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGCGATATACAAGCT
1 AGTGTAAGACATGTCTGAGACATGCATCGACCTCGAGATATACAAGCC
*
79468659 AGTGTAAGACTTGTCT
1 AGTGTAAGACATGTCT
79468675 TGGATATAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
48 54 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.29
Consensus pattern (48 bp):
AGTGTAAGACATGTCTGAGACATGCATCGACCTCGAGATATACAAGCC
Found at i:79468775 original size:49 final size:49
Alignment explanation
Indices: 79468702--79468826 Score: 153
Period size: 49 Copynumber: 2.5 Consensus size: 49
79468692 TGTGCTGTGT
* *
79468702 CAGTGTAAGACCTATCTGGGACATGGCATCGACAC-CGATAGATGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGAC-CTCGATAGATGAAAGC
* * * * * *
79468751 TAGTGTAAGACCTGTCTGGGACATGGCATTGGCCTTGCTATATGAAAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGC
79468800 CAGTGTAAGACCATGTCTGGGACATGG
1 CAGTGTAAGACC-TGTCTGGGACATGG
79468827 TGTCGGCATC
Statistics
Matches: 65, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
48 1 0.02
49 50 0.77
50 14 0.22
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGC
Found at i:79470411 original size:46 final size:46
Alignment explanation
Indices: 79470358--79470450 Score: 186
Period size: 46 Copynumber: 2.0 Consensus size: 46
79470348 AGAAAATATA
79470358 CAAAGGTAATCTGCTTAGTGTGATAGCCGCCTTAAAAGTGTCTACT
1 CAAAGGTAATCTGCTTAGTGTGATAGCCGCCTTAAAAGTGTCTACT
79470404 CAAAGGTAATCTGCTTAGTGTGATAGCCGCCTTAAAAGTGTCTACT
1 CAAAGGTAATCTGCTTAGTGTGATAGCCGCCTTAAAAGTGTCTACT
79470450 C
1 C
79470451 CTCCTTCTGG
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (46 bp):
CAAAGGTAATCTGCTTAGTGTGATAGCCGCCTTAAAAGTGTCTACT
Found at i:79475164 original size:25 final size:25
Alignment explanation
Indices: 79475136--79475183 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
79475126 TCCCCCTAAA
* *
79475136 TGTCTTGGTGAACTTTCTTGTTTAT
1 TGTCTAGGCGAACTTTCTTGTTTAT
*
79475161 TGTCTAGGCGGACTTTCTTGTTT
1 TGTCTAGGCGAACTTTCTTGTTT
79475184 TCCATAACGC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.10, C:0.15, G:0.23, T:0.52
Consensus pattern (25 bp):
TGTCTAGGCGAACTTTCTTGTTTAT
Found at i:79488669 original size:50 final size:48
Alignment explanation
Indices: 79488545--79488861 Score: 162
Period size: 50 Copynumber: 6.7 Consensus size: 48
79488535 GGGTATAATG
* *
79488545 CTGATGCTATGTCCTAGACATGGTCTTACACTGGCTCTCACGTTAAGT
1 CTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACGTTAAGT
* * * **
79488593 C-GATGCCATGACCCAAACATAGTCTTACACTGGCTCTCACGTATCCGT
1 CTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACGT-TAAGT
* * * * *
79488641 ACTGATGCCATGTCCCCGACATGGTCTTACACCGAG-TCCCACAAATTCA-T
1 -CTGATGCCATGTCCCAGACATGGTCTTACACTG-GCTCTCAC--GTTAAGT
* * * * * *
79488691 GCCGATGCCATGTCCTAGACATGGTCTTACATTGACACATCATG-TAA--
1 -CTGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCACGTTAAGT
* * *
79488738 CCGATG-CATGTCCCAGACAT-GTCTTACATTAGCTC-C-CGTCTCAA-T
1 CTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACGT-T-AAGT
* * * * *
79488783 GCCGATGCCATATCCCAAACACGGTCTTATACTGGCTCTCA---TAATGT
1 -CTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACGTTAA-GT
*
79488830 GGCCGATG-CATGTCCCAGACAT-GTCTTACACT
1 --CTGATGCCATGTCCCAGACATGGTCTTACACT
79488862 AGCATATAAA
Statistics
Matches: 207, Mismatches: 42, Indels: 42
0.71 0.14 0.14
Matches are distributed among these distances:
41 1 0.00
42 1 0.00
43 1 0.00
44 14 0.07
45 15 0.07
46 22 0.11
47 59 0.29
48 25 0.12
49 2 0.01
50 61 0.29
51 5 0.02
52 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.27
Consensus pattern (48 bp):
CTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACGTTAAGT
Found at i:79488809 original size:92 final size:94
Alignment explanation
Indices: 79488689--79488864 Score: 230
Period size: 94 Copynumber: 1.9 Consensus size: 94
79488679 CCACAAATTC
* * * * * *
79488689 ATGCCGATGCCATGTCCTAGACATGGTCTTACA-TTG-ACACATCATGTAACCGATGCATGTCCC
1 ATGCCGATGCCATATCCCAAACACGGTCTTACACTGGCACACATAATGTAACCGATGCATGTCCC
*
79488752 AGACATGTCTTACATTAGCTCCCGTCTCA
66 AGACATGTCTTACACTAGCTCCCGTCTCA
* * * **
79488781 ATGCCGATGCCATATCCCAAACACGGTCTTATACTGGCTCTCATAATGTGGCCGATGCATGTCCC
1 ATGCCGATGCCATATCCCAAACACGGTCTTACACTGGCACACATAATGTAACCGATGCATGTCCC
79488846 AGACATGTCTTACACTAGC
66 AGACATGTCTTACACTAGC
79488865 ATATAAATAT
Statistics
Matches: 70, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
92 28 0.40
93 2 0.03
94 40 0.57
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (94 bp):
ATGCCGATGCCATATCCCAAACACGGTCTTACACTGGCACACATAATGTAACCGATGCATGTCCC
AGACATGTCTTACACTAGCTCCCGTCTCA
Found at i:79489229 original size:30 final size:30
Alignment explanation
Indices: 79489195--79489252 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
79489185 CAATTTAAAA
* *
79489195 TTTTGCAAAATGGCCATTTTGCCCCTAGAC
1 TTTTGCAAAATGACCATTTTACCCCTAGAC
79489225 TTTTGCAAAATGACCATTTTACCCCTAG
1 TTTTGCAAAATGACCATTTTACCCCTAG
79489253 GTCCGAAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.14, T:0.34
Consensus pattern (30 bp):
TTTTGCAAAATGACCATTTTACCCCTAGAC
Found at i:79493004 original size:53 final size:52
Alignment explanation
Indices: 79492929--79493088 Score: 176
Period size: 52 Copynumber: 3.1 Consensus size: 52
79492919 CGGATCACAT
* * * * *
79492929 ATCATACCGATGCCATATCCCAGATATGGTTTTATATGGAATCACATTATCAC
1 ATCACACCGATGCCATAACCCAGCTATGGTTTTATACGGAAACACA-TATCAC
* * *
79492982 ATCACACCGATACCATAGCCCAGCTATGGTTTTATACGGAAACACGTATCAC
1 ATCACACCGATGCCATAACCCAGCTATGGTTTTATACGGAAACACATATCAC
** * * * * *
79493034 ATTGCACCAATGTCATAACCTAGCTATGGTCTTATACGGAAGCACATATCAC
1 ATCACACCGATGCCATAACCCAGCTATGGTTTTATACGGAAACACATATCAC
79493086 ATC
1 ATC
79493089 TTTTCCATCA
Statistics
Matches: 89, Mismatches: 18, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
52 50 0.56
53 39 0.44
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.28
Consensus pattern (52 bp):
ATCACACCGATGCCATAACCCAGCTATGGTTTTATACGGAAACACATATCAC
Found at i:79494006 original size:4 final size:4
Alignment explanation
Indices: 79493997--79494024 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
79493987 TTCACACTTG
79493997 ATTT ATTT ATTT ATTT ATTT ATTT ATTT
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT
79494025 GCACAATCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
ATTT
Found at i:79500552 original size:53 final size:52
Alignment explanation
Indices: 79500424--79500636 Score: 216
Period size: 52 Copynumber: 4.3 Consensus size: 52
79500414 TACACATAGT
* * * *
79500424 CACA-TATCACA-CAC-CGAAGCCATAGCCCCGCCATGGTCTTATACGG-AT
1 CACATTATCACATCACTCGATGCCATAGCCCAGCTATGGTCTTATACGGAAA
* * *
79500472 CACA-TAT--CAT-AC-CGATGCCATATCCCAGGTATGGTCTTATACGGAAT
1 CACATTATCACATCACTCGATGCCATAGCCCAGCTATGGTCTTATACGGAAA
79500519 CACATTATCACATCACATCGATGCCATAGCCCAGCTATGGTCTTATACGGAAA
1 CACATTATCACATCAC-TCGATGCCATAGCCCAGCTATGGTCTTATACGGAAA
* * *
79500572 CAC-GTATCAGATTGCACT-GATGCCATAGCCCAGCTATGGTCTTATACGGAAG
1 CACATTATCACA-T-CACTCGATGCCATAGCCCAGCTATGGTCTTATACGGAAA
*
79500624 CATATT-TCACATC
1 CACATTATCACATC
79500637 TTTTCCATCA
Statistics
Matches: 140, Mismatches: 14, Indels: 20
0.80 0.08 0.11
Matches are distributed among these distances:
46 31 0.22
47 6 0.04
48 10 0.07
50 4 0.03
51 3 0.02
52 45 0.32
53 38 0.27
54 3 0.02
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.25
Consensus pattern (52 bp):
CACATTATCACATCACTCGATGCCATAGCCCAGCTATGGTCTTATACGGAAA
Found at i:79504599 original size:13 final size:12
Alignment explanation
Indices: 79504564--79504600 Score: 56
Period size: 13 Copynumber: 2.9 Consensus size: 12
79504554 GTTACAAGCT
79504564 ATTTATTTTTTA
1 ATTTATTTTTTA
79504576 ATTTAATTTTTTA
1 ATTT-ATTTTTTA
79504589 ATTTATCTTTTT
1 ATTTAT-TTTTT
79504601 CAAATAATGC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 6 0.26
13 17 0.74
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.73
Consensus pattern (12 bp):
ATTTATTTTTTA
Found at i:79504826 original size:91 final size:89
Alignment explanation
Indices: 79504705--79505042 Score: 407
Period size: 91 Copynumber: 3.8 Consensus size: 89
79504695 GTCTTAACTT
* * * *
79504705 CAAGTACTATAATAATACACAGATTGATAGTTTAGGTACCACATTGAACATTTTTAAATTATAAG
1 CAAGTACCA-AATAATACACAAATTGATAGTTTAGGTACCACATTGAACATTTTTAAAGTACAAG
79504770 TATCACATTAGACATTTTATGAAAGTA
65 TA-CACA-TAGACATTTTATGAAAGTA
* * *
79504797 CAGGTACCAAATAATACTCAAATTGATAGTTTAGGTATCACATT-AGACATTTTTAAAGTACAAG
1 CAAGTACCAAATAATACACAAATTGATAGTTTAGGTACCACATTGA-ACATTTTTAAAGTACAAG
79504861 TAC-C--AGACATTTTATGAAAGTA
65 TACACATAGACATTTTATGAAAGTA
* *
79504883 CAAGTACCAAATAATACACAAATTGATTAGTTCAGGTACCACATTGGACATTTTTAAAGTACAAG
1 CAAGTACCAAATAATACACAAATTGA-TAGTTTAGGTACCACATTGAACATTTTTAAAGTACAAG
79504948 TACCACATCAGACATTTTATGAAAGTA
65 TA-CACAT-AGACATTTTATGAAAGTA
* * * * * * * * *
79504975 CAAGTCCCAAATAATATAAAAATTAACAATTCAAGTATCACATT-AGACATTTTTAAAGTACAAG
1 CAAGTACCAAATAATACACAAATTGATAGTTTAGGTACCACATTGA-ACATTTTTAAAGTACAAG
79505039 TACA
65 TACA
79505043 TTATTCGAAT
Statistics
Matches: 216, Mismatches: 21, Indels: 20
0.84 0.08 0.08
Matches are distributed among these distances:
86 42 0.19
87 36 0.17
88 1 0.00
89 2 0.01
90 4 0.02
91 84 0.39
92 47 0.22
ACGTcount: A:0.43, C:0.15, G:0.12, T:0.31
Consensus pattern (89 bp):
CAAGTACCAAATAATACACAAATTGATAGTTTAGGTACCACATTGAACATTTTTAAAGTACAAGT
ACACATAGACATTTTATGAAAGTA
Found at i:79504868 original size:24 final size:26
Alignment explanation
Indices: 79504841--79504891 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
79504831 GTATCACATT
79504841 AGACATTTT-T-AAAGTACAAGTACC
1 AGACATTTTATGAAAGTACAAGTACC
79504865 AGACATTTTATGAAAGTACAAGTACC
1 AGACATTTTATGAAAGTACAAGTACC
79504891 A
1 A
79504892 AATAATACAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
24 9 0.36
25 1 0.04
26 15 0.60
ACGTcount: A:0.43, C:0.16, G:0.14, T:0.27
Consensus pattern (26 bp):
AGACATTTTATGAAAGTACAAGTACC
Found at i:79504952 original size:29 final size:31
Alignment explanation
Indices: 79504918--79504979 Score: 92
Period size: 29 Copynumber: 2.1 Consensus size: 31
79504908 ATTAGTTCAG
**
79504918 GTACCACATTGGACATTTT-T-AAAGTACAA
1 GTACCACATCAGACATTTTATGAAAGTACAA
79504947 GTACCACATCAGACATTTTATGAAAGTACAA
1 GTACCACATCAGACATTTTATGAAAGTACAA
79504978 GT
1 GT
79504980 CCCAAATAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 17 0.59
30 1 0.03
31 11 0.38
ACGTcount: A:0.39, C:0.18, G:0.15, T:0.29
Consensus pattern (31 bp):
GTACCACATCAGACATTTTATGAAAGTACAA
Found at i:79505015 original size:178 final size:178
Alignment explanation
Indices: 79504705--79505041 Score: 498
Period size: 178 Copynumber: 1.9 Consensus size: 178
79504695 GTCTTAACTT
* * * * *
79504705 CAAGTACTATAATAATACACAGATTGATAGTTTAGGTACCACATTGAACATTTTTAAATTATAAG
1 CAAGTACCATAATAATACACAAATTGATAGTTCAGGTACCACATTGAACATTTTTAAAGTACAAG
* * * * * * * * *
79504770 TATCACATTAGACATTTTATGAAAGTACAGGTACCAAATAATACTCAAATTGATAGTTTAGGTAT
66 TACCACATCAGACATTTTATGAAAGTACAAGTACCAAATAATACTAAAATTAACAATTCAAGTAT
79504835 CACATTAGACATTTTTAAAGTACAAGTACCAGACATTTTATGAAAGTA
131 CACATTAGACATTTTTAAAGTACAAGTACCAGACATTTTATGAAAGTA
*
79504883 CAAGTACCA-AATAATACACAAATTGATTAGTTCAGGTACCACATTGGACATTTTTAAAGTACAA
1 CAAGTACCATAATAATACACAAATTGA-TAGTTCAGGTACCACATTGAACATTTTTAAAGTACAA
*
79504947 GTACCACATCAGACATTTTATGAAAGTACAAGTCCCAAATAATA-TAAAAATTAACAATTCAAGT
65 GTACCACATCAGACATTTTATGAAAGTACAAGTACCAAATAATACT-AAAATTAACAATTCAAGT
79505011 ATCACATTAGACATTTTTAAAGTACAAGTAC
129 ATCACATTAGACATTTTTAAAGTACAAGTAC
79505042 ATTATTCGAA
Statistics
Matches: 141, Mismatches: 16, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
177 17 0.12
178 124 0.88
ACGTcount: A:0.42, C:0.15, G:0.12, T:0.31
Consensus pattern (178 bp):
CAAGTACCATAATAATACACAAATTGATAGTTCAGGTACCACATTGAACATTTTTAAAGTACAAG
TACCACATCAGACATTTTATGAAAGTACAAGTACCAAATAATACTAAAATTAACAATTCAAGTAT
CACATTAGACATTTTTAAAGTACAAGTACCAGACATTTTATGAAAGTA
Found at i:79505622 original size:22 final size:22
Alignment explanation
Indices: 79505597--79505665 Score: 65
Period size: 22 Copynumber: 3.2 Consensus size: 22
79505587 ATACTTAGAG
79505597 TTTTATTTAAGTAATAACTCAA
1 TTTTATTTAAGTAATAACTCAA
* * *
79505619 TTTTA--AAATTAAT-AC-AAGA
1 TTTTATTTAAGTAATAACTCA-A
79505638 GTTTTATTTAAGTAATAACTCAA
1 -TTTTATTTAAGTAATAACTCAA
79505661 TTTTA
1 TTTTA
79505666 AAATTAATAC
Statistics
Matches: 35, Mismatches: 6, Indels: 12
0.66 0.11 0.23
Matches are distributed among these distances:
18 1 0.03
19 3 0.09
20 11 0.31
22 16 0.46
23 3 0.09
24 1 0.03
ACGTcount: A:0.42, C:0.07, G:0.06, T:0.45
Consensus pattern (22 bp):
TTTTATTTAAGTAATAACTCAA
Found at i:79505640 original size:42 final size:42
Alignment explanation
Indices: 79505593--79505677 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
79505583 TTTTATACTT
79505593 AGAGTTTTATTTAAGTAATAACTCAATTTTAAAATTAATACA
1 AGAGTTTTATTTAAGTAATAACTCAATTTTAAAATTAATACA
79505635 AGAGTTTTATTTAAGTAATAACTCAATTTTAAAATTAATACA
1 AGAGTTTTATTTAAGTAATAACTCAATTTTAAAATTAATACA
79505677 A
1 A
79505678 TAAATATAAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.46, C:0.07, G:0.07, T:0.40
Consensus pattern (42 bp):
AGAGTTTTATTTAAGTAATAACTCAATTTTAAAATTAATACA
Found at i:79505869 original size:3 final size:3
Alignment explanation
Indices: 79505861--79505888 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
79505851 AACTTGTGAT
79505861 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
79505889 GCTTAAGGGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:79506272 original size:28 final size:29
Alignment explanation
Indices: 79506220--79506277 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 29
79506210 CAATAAATGT
79506220 TATAAAAATTATTAAATTTTAATTAAAAA
1 TATAAAAATTATTAAATTTTAATTAAAAA
79506249 TATAAAAA-TATTTAAGA-TTT-ATTAAAAA
1 TATAAAAATTA-TTAA-ATTTTAATTAAAAA
79506277 T
1 T
79506278 TAGGAATTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
28 11 0.41
29 15 0.56
30 1 0.04
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (29 bp):
TATAAAAATTATTAAATTTTAATTAAAAA
Found at i:79506357 original size:20 final size:20
Alignment explanation
Indices: 79506289--79506367 Score: 61
Period size: 20 Copynumber: 3.9 Consensus size: 20
79506279 AGGAATTTTT
*
79506289 TTATAAAAATCGT-AAAAAAA
1 TTAT-AAAATCATAAAAAAAA
** ** **
79506309 TTATAAAATTTTGTAAAATT
1 TTATAAAATCATAAAAAAAA
79506329 TTATAAAATCATAAAAAAAA
1 TTATAAAATCATAAAAAAAA
79506349 TTATAAAATGCATTAAAAA
1 TTATAAAAT-CA-TAAAAA
79506368 GTCCATTTAA
Statistics
Matches: 45, Mismatches: 11, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
19 6 0.13
20 31 0.69
21 2 0.04
22 6 0.13
ACGTcount: A:0.59, C:0.04, G:0.04, T:0.33
Consensus pattern (20 bp):
TTATAAAATCATAAAAAAAA
Found at i:79506366 original size:40 final size:40
Alignment explanation
Indices: 79506287--79506366 Score: 101
Period size: 40 Copynumber: 2.0 Consensus size: 40
79506277 TTAGGAATTT
* **
79506287 TTTTATAAAAATCGTAAAAAAATTATAAAATTTTGTAAAA
1 TTTTATAAAAATCATAAAAAAATTATAAAATCATGTAAAA
79506327 TTTTAT-AAAATCATAAAAAAAATTATAAAATGCAT-TAAAA
1 TTTTATAAAAATCAT-AAAAAAATTATAAAAT-CATGTAAAA
79506367 AGTCCATTTA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
39 7 0.20
40 27 0.77
41 1 0.03
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.35
Consensus pattern (40 bp):
TTTTATAAAAATCATAAAAAAATTATAAAATCATGTAAAA
Found at i:79507097 original size:86 final size:84
Alignment explanation
Indices: 79506900--79507106 Score: 193
Period size: 86 Copynumber: 2.4 Consensus size: 84
79506890 AAAGCAGGGA
* * * *
79506900 CTTAATTG-TTTTTTGAAAAAGTTTGAAAGCCTTTTGATGCATTTCAAAAGTTCAAGTACCCAAT
1 CTTAAGTGCTTTTTTGAAAAAGTTT-AAGGCTTTTTGATGCATTTCAAAAGTTCAAGTACCCAAG
** *
79506964 TGAATACAAAAAAAGTAGGG
65 TGAATACAAAAAAAAAAAGG
*** * *
79506984 CTTAAGTGCTTTTAAAAAAAAGTTTTAAGGCATTTTTGATGCGTTGTGAAAA-TTCAAGTACCCA
1 CTTAAGTGCTTTTTTGAAAAAG-TTTAAGGC-TTTTTGATGCATT-TCAAAAGTTCAAGTACCCA
*
79507048 AGTGAATGCAAAAAAAAAAAGG
63 AGTGAATACAAAAAAAAAAAGG
* * **
79507070 TTTAATTATTTTTTTTGAAAAAGTTTAAGAGCTTTTT
1 CTTAAGT-GCTTTTTTGAAAAAGTTTAAG-GCTTTTT
79507107 ACATCCTTAA
Statistics
Matches: 97, Mismatches: 20, Indels: 10
0.76 0.16 0.08
Matches are distributed among these distances:
84 7 0.07
85 14 0.14
86 59 0.61
87 17 0.18
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (84 bp):
CTTAAGTGCTTTTTTGAAAAAGTTTAAGGCTTTTTGATGCATTTCAAAAGTTCAAGTACCCAAGT
GAATACAAAAAAAAAAAGG
Found at i:79508753 original size:25 final size:24
Alignment explanation
Indices: 79508724--79508770 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
79508714 AAAATATTAT
*
79508724 TAAAATAATAATAGTAGTCATTTAA
1 TAAAAGAAT-ATAGTAGTCATTTAA
* *
79508749 TAAAAGGATATATTAGTCATTT
1 TAAAAGAATATAGTAGTCATTT
79508771 CCTAACCGAG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 12 0.63
25 7 0.37
ACGTcount: A:0.47, C:0.04, G:0.11, T:0.38
Consensus pattern (24 bp):
TAAAAGAATATAGTAGTCATTTAA
Found at i:79509370 original size:13 final size:13
Alignment explanation
Indices: 79509342--79509400 Score: 54
Period size: 13 Copynumber: 4.6 Consensus size: 13
79509332 AAAAGAAAAT
79509342 TTTAAT-ATTTTA
1 TTTAATAATTTTA
79509354 --TAATAATTTTA
1 TTTAATAATTTTA
79509365 TTTAATAATTTT-
1 TTTAATAATTTTA
*
79509377 TTTGAACAAAGTTTTA
1 TTT-AA-TAA-TTTTA
79509393 TTTAATAA
1 TTTAATAA
79509401 CTGAATTATA
Statistics
Matches: 38, Mismatches: 2, Indels: 12
0.73 0.04 0.23
Matches are distributed among these distances:
10 4 0.11
11 6 0.16
12 3 0.08
13 12 0.32
14 4 0.11
15 6 0.16
16 3 0.08
ACGTcount: A:0.39, C:0.02, G:0.03, T:0.56
Consensus pattern (13 bp):
TTTAATAATTTTA
Found at i:79509969 original size:62 final size:62
Alignment explanation
Indices: 79509897--79510039 Score: 189
Period size: 62 Copynumber: 2.3 Consensus size: 62
79509887 CTTGTACTTG
* * *
79509897 AAAATGTCCAATGTGGTACCTAAACTA-TCAATTAATGTATTATTTGAAACTTATATTTTCAT
1 AAAATATCCAATGTGGTACCTAAACTACT-AATTAATATATTATTTGAAACTTATACTTTCAT
** ** *
79509959 AAAATATCCAATGTGGTACCTAAACTACTAATTTGTATATTATTTGGTACTTGTACTTTCAT
1 AAAATATCCAATGTGGTACCTAAACTACTAATTAATATATTATTTGAAACTTATACTTTCAT
*
79510021 AAAATCTCCAATGTGGTAC
1 AAAATATCCAATGTGGTAC
79510040 TTATACTTTG
Statistics
Matches: 71, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
62 70 0.99
63 1 0.01
ACGTcount: A:0.35, C:0.15, G:0.11, T:0.39
Consensus pattern (62 bp):
AAAATATCCAATGTGGTACCTAAACTACTAATTAATATATTATTTGAAACTTATACTTTCAT
Found at i:79510591 original size:41 final size:41
Alignment explanation
Indices: 79510494--79510776 Score: 426
Period size: 41 Copynumber: 6.9 Consensus size: 41
79510484 TGTAAAACAT
* * *
79510494 AGAGCAATAGCGGCGTTTTTGGTAAAACGCCGCTAAAAA-T
1 AGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACC
* *
79510534 AGAGCAATAGCGGCGCTTTTGGTAAAACGCCACTAAAAACC
1 AGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACC
79510575 AGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACC
1 AGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACC
* *
79510616 AGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCAAAAAATC
1 AGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACC
*
79510657 AGAGCATTAGCGGCGCTTTTGGTAAAACACCGCTAAAAACC
1 AGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACC
* * *
79510698 AGAGCATTCGTGGCGCTATTGGTAAAACGCCGCTAAAAACC
1 AGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACC
**
79510739 -GAAGCATTAGCGGCGCTTTCCGTAAAACGCCGCTAAAA
1 AG-AGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAA
79510777 GTCATATAAC
Statistics
Matches: 222, Mismatches: 19, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
40 38 0.17
41 184 0.83
ACGTcount: A:0.34, C:0.23, G:0.24, T:0.19
Consensus pattern (41 bp):
AGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACC
Found at i:79510866 original size:23 final size:22
Alignment explanation
Indices: 79510819--79510866 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
79510809 AAAAAATCAT
* *
79510819 AAACACTAATCTATAATCCTTA
1 AAACACTAAACTATAAACCTTA
*
79510841 AAACACTAAACTCCTAAACCTTA
1 AAACACTAAACT-ATAAACCTTA
79510864 AAA
1 AAA
79510867 AATCTTAAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 11 0.50
23 11 0.50
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (22 bp):
AAACACTAAACTATAAACCTTA
Found at i:79511104 original size:15 final size:15
Alignment explanation
Indices: 79511081--79511134 Score: 51
Period size: 15 Copynumber: 3.7 Consensus size: 15
79511071 TATTTTAAGT
*
79511081 TTTATGGATTATGGG
1 TTTAGGGATTATGGG
79511096 TTTAGGGATTAT-GG
1 TTTAGGGATTATGGG
*
79511110 TTTAAGGG-TTAGGGG
1 TTT-AGGGATTATGGG
*
79511125 TCTA-GGATTA
1 TTTAGGGATTA
79511135 AAAGTTTATA
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
13 2 0.06
14 12 0.36
15 19 0.58
ACGTcount: A:0.22, C:0.02, G:0.35, T:0.41
Consensus pattern (15 bp):
TTTAGGGATTATGGG
Found at i:79511107 original size:22 final size:21
Alignment explanation
Indices: 79511082--79511123 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
79511072 ATTTTAAGTT
*
79511082 TTATGGATTATGGGTTTAGGGA
1 TTATGGATTAAGGG-TTAGGGA
*
79511104 TTATGGTTTAAGGGTTAGGG
1 TTATGGATTAAGGGTTAGGG
79511124 GTCTAGGATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.21, C:0.00, G:0.38, T:0.40
Consensus pattern (21 bp):
TTATGGATTAAGGGTTAGGGA
Found at i:79511953 original size:16 final size:17
Alignment explanation
Indices: 79511932--79511964 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
79511922 TATTTGTTTT
79511932 AATATA-TTAAATTATC
1 AATATAGTTAAATTATC
79511948 AATATAGTTTAAATTAT
1 AATATAG-TTAAATTAT
79511965 TTAAGAGAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.45
Consensus pattern (17 bp):
AATATAGTTAAATTATC
Found at i:79513763 original size:79 final size:80
Alignment explanation
Indices: 79513668--79513816 Score: 194
Period size: 81 Copynumber: 1.9 Consensus size: 80
79513658 TACCTTTTTG
* * * * * *
79513668 AATTTGTGATAGATTTTTAGTGGG-AATTTTG-ATATTCTTTGTCACTTACTTGTGTATCTTGGC
1 AATTTGTAATAAATTTTCAGTGGGAAATTTTGCAGA-TCTTTATCACATACTTGTGTATCTTGGC
79513731 TGTTGGTACATTGTTT
65 TGTTGGTACATTGTTT
* *
79513747 AATTTGTAATAAATTTTCAGTGGGAAAATTTTGCAGATGTTTATCACATGCTTGTGTATCTTGGC
1 AATTTGTAATAAATTTTCAGTGGG-AAATTTTGCAGATCTTTATCACATACTTGTGTATCTTGGC
79513812 TGTTG
65 TGTTG
79513817 ACTTCAGAAT
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
79 21 0.36
81 36 0.61
82 2 0.03
ACGTcount: A:0.22, C:0.09, G:0.21, T:0.47
Consensus pattern (80 bp):
AATTTGTAATAAATTTTCAGTGGGAAATTTTGCAGATCTTTATCACATACTTGTGTATCTTGGCT
GTTGGTACATTGTTT
Found at i:79516857 original size:25 final size:24
Alignment explanation
Indices: 79516811--79516862 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 24
79516801 TTAATCTAAT
*
79516811 TTTTATTATTTATTTTAGTTTTGA
1 TTTTATTATTTATTTTAGTTTTAA
*
79516835 TTTTATTTTTTTATTTTTA-TTTTAA
1 TTTTA-TTATTTA-TTTTAGTTTTAA
79516860 TTT
1 TTT
79516863 GATAATGAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 5 0.21
25 14 0.58
26 5 0.21
ACGTcount: A:0.19, C:0.00, G:0.04, T:0.77
Consensus pattern (24 bp):
TTTTATTATTTATTTTAGTTTTAA
Found at i:79517113 original size:44 final size:43
Alignment explanation
Indices: 79516986--79517119 Score: 214
Period size: 43 Copynumber: 3.1 Consensus size: 43
79516976 TTTCATTACT
* *
79516986 TTTAGCGGCGTTTGTGGGAAAAGCGTCGCTAAAGGCCATGACT
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGCCATGACC
* *
79517029 TTTAGCGGCGTTTGTGGGAAAGGCGCCGTTAAAGGCCATGACC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGCCATGACC
*
79517072 TTTAGCGGCGTTTGTGGTAAAAAGCGCCGCTAAAGGCCATGACC
1 TTTAGCGGCGTTTGTGG-GAAAAGCGCCGCTAAAGGCCATGACC
79517116 TTTA
1 TTTA
79517120 AGAGGTCATT
Statistics
Matches: 83, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
43 56 0.67
44 27 0.33
ACGTcount: A:0.23, C:0.20, G:0.31, T:0.25
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGCCATGACC
Found at i:79518308 original size:25 final size:24
Alignment explanation
Indices: 79518262--79518313 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 24
79518252 TTAATCTAAT
*
79518262 TTTTATTATTTATTTTAGTTTTGA
1 TTTTATTATTTATTTTAGTTTTAA
*
79518286 TTTTATTTTTTTATTTTTA-TTTTAA
1 TTTTA-TTATTTA-TTTTAGTTTTAA
79518311 TTT
1 TTT
79518314 GATAATGAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 5 0.21
25 14 0.58
26 5 0.21
ACGTcount: A:0.19, C:0.00, G:0.04, T:0.77
Consensus pattern (24 bp):
TTTTATTATTTATTTTAGTTTTAA
Found at i:79518564 original size:44 final size:43
Alignment explanation
Indices: 79518437--79518570 Score: 214
Period size: 43 Copynumber: 3.1 Consensus size: 43
79518427 TTTCATTACT
* *
79518437 TTTAGCGGCGTTTGTGGGAAAAGCGTCGCTAAAGGCCATGACT
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGCCATGACC
* *
79518480 TTTAGCGGCGTTTGTGGGAAAGGCGCCGTTAAAGGCCATGACC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGCCATGACC
*
79518523 TTTAGCGGCGTTTGTGGTAAAAAGCGCCGCTAAAGGCCATGACC
1 TTTAGCGGCGTTTGTGG-GAAAAGCGCCGCTAAAGGCCATGACC
79518567 TTTA
1 TTTA
79518571 AGAGGTCATT
Statistics
Matches: 83, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
43 56 0.67
44 27 0.33
ACGTcount: A:0.23, C:0.20, G:0.31, T:0.25
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGCCATGACC
Found at i:79519759 original size:25 final size:24
Alignment explanation
Indices: 79519713--79519764 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 24
79519703 TTAATCTAAT
*
79519713 TTTTATTATTTATTTTAGTTTTGA
1 TTTTATTATTTATTTTAGTTTTAA
*
79519737 TTTTATTTTTTTATTTTTA-TTTTAA
1 TTTTA-TTATTTA-TTTTAGTTTTAA
79519762 TTT
1 TTT
79519765 GATAATGAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 5 0.21
25 14 0.58
26 5 0.21
ACGTcount: A:0.19, C:0.00, G:0.04, T:0.77
Consensus pattern (24 bp):
TTTTATTATTTATTTTAGTTTTAA
Done.