Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 231 of 295
Found at i:79904060 original size:17 final size:19
Alignment explanation
Indices: 79904024--79904061 Score: 62
Period size: 17 Copynumber: 2.1 Consensus size: 19
79904014 TTATTTTTCA
79904024 TTATTTCAATTTCTGCAAT
1 TTATTTCAATTTCTGCAAT
79904043 TTATTT-AATTTC-GCAAT
1 TTATTTCAATTTCTGCAAT
79904060 TT
1 TT
79904062 CAATTCACTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 7 0.37
18 6 0.32
19 6 0.32
ACGTcount: A:0.26, C:0.13, G:0.05, T:0.55
Consensus pattern (19 bp):
TTATTTCAATTTCTGCAAT
Found at i:79908601 original size:30 final size:30
Alignment explanation
Indices: 79908541--79908601 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
79908531 CGATTTTCGG
* **
79908541 GCCTAGGGGTAAAATGGTCATTTTGTCAAA
1 GCCTAGGGGAAAAATGGTCATTTTACCAAA
79908571 GCCTAGGGGAAAAATGGTCATTTTACCAAA
1 GCCTAGGGGAAAAATGGTCATTTTACCAAA
79908601 G
1 G
79908602 ATATGAATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.33, C:0.15, G:0.26, T:0.26
Consensus pattern (30 bp):
GCCTAGGGGAAAAATGGTCATTTTACCAAA
Found at i:79909110 original size:46 final size:46
Alignment explanation
Indices: 79908992--79909163 Score: 145
Period size: 46 Copynumber: 3.7 Consensus size: 46
79908982 TGAGAGCCAG
* * *
79908992 TGTAAGACCATGTCTGGGACATGCATCGGCCT-TGAGACGTAAGTCAG
1 TGTAAGACCATGTCTGGGACATGCATCGG-CTACGAGATGT-AGTCAA
*
79909039 TGTAAGA-CATGTCTGCGACATGCATCGGCTACGAGATGT-GTCAA
1 TGTAAGACCATGTCTGGGACATGCATCGGCTACGAGATGTAGTCAA
* * * * **
79909083 TGTAAGACCATGTTTGGGACACGGCATCGG-TACAGATATGCTAGAGCTTG
1 TGTAAGACCATGTCTGGGACA-TGCATCGGCTAC-GAGATG-TAG-TC-AA
*
79909133 TGTAAGACCATGTCTAGGACATGGCATCGGC
1 TGTAAGACCATGTCTGGGACAT-GCATCGGC
79909164 ACTTTACCCC
Statistics
Matches: 101, Mismatches: 14, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
44 11 0.11
45 16 0.16
46 38 0.38
47 8 0.08
48 1 0.01
49 1 0.01
50 26 0.26
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.24
Consensus pattern (46 bp):
TGTAAGACCATGTCTGGGACATGCATCGGCTACGAGATGTAGTCAA
Found at i:79911713 original size:21 final size:21
Alignment explanation
Indices: 79911687--79911729 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
79911677 TGTAATGTAT
79911687 AATTGATATTTGGATTATCAA
1 AATTGATATTTGGATTATCAA
79911708 AATTGATATTTGGATTATCAA
1 AATTGATATTTGGATTATCAA
79911729 A
1 A
79911730 TATTTCATGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.40, C:0.05, G:0.14, T:0.42
Consensus pattern (21 bp):
AATTGATATTTGGATTATCAA
Found at i:79913219 original size:16 final size:17
Alignment explanation
Indices: 79913193--79913226 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
79913183 CATATTCTAC
79913193 CAAACCCAAACCCAAAT
1 CAAACCCAAACCCAAAT
*
79913210 CAAA-CCAAACTCAAAT
1 CAAACCCAAACCCAAAT
79913226 C
1 C
79913227 CACAAGTACT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.53, C:0.38, G:0.00, T:0.09
Consensus pattern (17 bp):
CAAACCCAAACCCAAAT
Found at i:79921913 original size:3 final size:3
Alignment explanation
Indices: 79921907--79921931 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
79921897 ATGATGGAAT
79921907 TGA TGA TGA TGA TGA TGA TGA TGA T
1 TGA TGA TGA TGA TGA TGA TGA TGA T
79921932 TAGTGGTTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.32, T:0.36
Consensus pattern (3 bp):
TGA
Found at i:79928717 original size:19 final size:20
Alignment explanation
Indices: 79928673--79928717 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
79928663 ACCATGTTCA
* *
79928673 TATTTTTATCATGGTTTAAT
1 TATTTTTATAATGATTTAAT
79928693 TA-TTTTATAAT-ATTTAAT
1 TATTTTTATAATGATTTAAT
79928711 TATTTTT
1 TATTTTT
79928718 CGACAAGAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
18 8 0.36
19 12 0.55
20 2 0.09
ACGTcount: A:0.29, C:0.02, G:0.04, T:0.64
Consensus pattern (20 bp):
TATTTTTATAATGATTTAAT
Found at i:79931590 original size:26 final size:26
Alignment explanation
Indices: 79931556--79931606 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
79931546 AATAAAAATT
*
79931556 ATTAATAATTCAAT-GAATTAAAAAA
1 ATTAATAATTCAATACAATTAAAAAA
*
79931581 ATTAATTAATTGAATACAATTAAAAA
1 ATTAA-TAATTCAATACAATTAAAAA
79931607 TTAAGAGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 5 0.23
26 8 0.36
27 9 0.41
ACGTcount: A:0.59, C:0.04, G:0.04, T:0.33
Consensus pattern (26 bp):
ATTAATAATTCAATACAATTAAAAAA
Found at i:79939030 original size:9 final size:9
Alignment explanation
Indices: 79939016--79939047 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
79939006 CAACGCTTTT
79939016 TTGCATTCA
1 TTGCATTCA
79939025 TTGCATTCA
1 TTGCATTCA
79939034 TTGCATTCA
1 TTGCATTCA
79939043 -TGCAT
1 TTGCAT
79939048 CGGCATTGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 5 0.22
9 18 0.78
ACGTcount: A:0.22, C:0.22, G:0.12, T:0.44
Consensus pattern (9 bp):
TTGCATTCA
Found at i:79947592 original size:42 final size:44
Alignment explanation
Indices: 79947530--79947649 Score: 129
Period size: 44 Copynumber: 2.8 Consensus size: 44
79947520 AATTTTCAAA
* * *
79947530 CCTTAAACCCCTAAGTAGTAGGGTAACAGGTTGA-GTTTAC-AG
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGGTTGATGATGACAAG
* * * **
79947572 -ATCTAAACCCCTAAGCAGTAGGGAAACAGATCAATGATGACAAG
1 CCT-TAAACCCCTAAGCAGTAGGGTAACAGGTTGATGATGACAAG
*
79947616 CCTTAACCCCCTAAGCAGTAGGGTAACAGGTTGA
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGGTTGA
79947650 AAATCAAATA
Statistics
Matches: 60, Mismatches: 14, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
41 1 0.02
42 26 0.43
43 4 0.07
44 28 0.47
45 1 0.02
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.21
Consensus pattern (44 bp):
CCTTAAACCCCTAAGCAGTAGGGTAACAGGTTGATGATGACAAG
Found at i:79949400 original size:3 final size:3
Alignment explanation
Indices: 79949387--79949455 Score: 88
Period size: 3 Copynumber: 23.0 Consensus size: 3
79949377 ACGTATACAT
79949387 TTA TATA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
79949433 GTT- TTA ATA TTA TTG TT- TTA TTA
1 -TTA TTA TTA TTA TTA TTA TTA TTA
79949456 AATACATTCG
Statistics
Matches: 59, Mismatches: 3, Indels: 8
0.84 0.04 0.11
Matches are distributed among these distances:
2 4 0.07
3 50 0.85
4 5 0.08
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:79965964 original size:22 final size:22
Alignment explanation
Indices: 79965922--79965966 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
79965912 ATGCTAAAAA
**
79965922 TATCGATACTTTTTTTAGCAAG
1 TATCGATACTTTGGTTAGCAAG
79965944 TATCGATACTTATGGTT-GCAAG
1 TATCGATACTT-TGGTTAGCAAG
79965966 T
1 T
79965967 GAATTAAATG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 17 0.85
23 3 0.15
ACGTcount: A:0.27, C:0.13, G:0.18, T:0.42
Consensus pattern (22 bp):
TATCGATACTTTGGTTAGCAAG
Found at i:79968498 original size:15 final size:15
Alignment explanation
Indices: 79968478--79968533 Score: 71
Period size: 15 Copynumber: 3.7 Consensus size: 15
79968468 GTATCTTGGG
79968478 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
79968493 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
79968508 TTT-TTCTA-TCTTGGA
1 TTTCTT-TATTC-TGGA
79968523 TTTCTTTATTC
1 TTTCTTTATTC
79968534 AGTTTTCTTG
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
14 4 0.11
15 27 0.77
16 4 0.11
ACGTcount: A:0.11, C:0.14, G:0.12, T:0.62
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:79969023 original size:30 final size:30
Alignment explanation
Indices: 79968987--79969081 Score: 181
Period size: 30 Copynumber: 3.2 Consensus size: 30
79968977 AGTACAGTGA
*
79968987 GGATCGACTTCTGATGTTGAATTTTAGATT
1 GGATCGACTTCTGATGTTGAATTTCAGATT
79969017 GGATCGACTTCTGATGTTGAATTTCAGATT
1 GGATCGACTTCTGATGTTGAATTTCAGATT
79969047 GGATCGACTTCTGATGTTGAATTTCAGATT
1 GGATCGACTTCTGATGTTGAATTTCAGATT
79969077 GGATC
1 GGATC
79969082 TAATTCATGG
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 64 1.00
ACGTcount: A:0.23, C:0.13, G:0.24, T:0.40
Consensus pattern (30 bp):
GGATCGACTTCTGATGTTGAATTTCAGATT
Found at i:79971182 original size:51 final size:49
Alignment explanation
Indices: 79971062--79971256 Score: 255
Period size: 49 Copynumber: 3.9 Consensus size: 49
79971052 ACTATTGTGA
* * *
79971062 GGTCACGTGTGTAGCACTAAGTGCAGGCTACTACGTGTACCAGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
* * * * *
79971111 GGTCGCATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCCGAAAACTGT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAA-T-T
* * *
79971162 GATCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
* *
79971211 GGTCACATGTGTAGTACTAAGTGCAGGCTGCTATGCGTACCAGATA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATA
79971257 GCTTCAGCTA
Statistics
Matches: 123, Mismatches: 21, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
49 81 0.66
50 2 0.02
51 40 0.33
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
Found at i:79971245 original size:100 final size:100
Alignment explanation
Indices: 79971064--79971251 Score: 322
Period size: 100 Copynumber: 1.9 Consensus size: 100
79971054 TATTGTGAGG
* *
79971064 TCACGTGTGTAGCACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
1 TCACATGTGTAGCACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACT
*
79971129 AAGTGTAGGCTACTATGCGTACCCGAAAACTGTGA
66 AAGTGCAGGCTACTATGCGTACCCGAAAACTGTGA
* *
79971164 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCACATGTGTAGTACT
1 TCACATGTGTAGCACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACT
*
79971229 AAGTGCAGGCTGCTATGCGTACC
66 AAGTGCAGGCTACTATGCGTACC
79971252 AGATAGCTTC
Statistics
Matches: 82, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
100 82 1.00
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (100 bp):
TCACATGTGTAGCACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACT
AAGTGCAGGCTACTATGCGTACCCGAAAACTGTGA
Found at i:79971274 original size:100 final size:100
Alignment explanation
Indices: 79971070--79971275 Score: 297
Period size: 100 Copynumber: 2.1 Consensus size: 100
79971060 GAGGTCACGT
* *
79971070 GTGTAGCACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACTAAGTGT
1 GTGTAGCACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACTAAGTGC
* * * *
79971135 AGGCTACTATGCGTACCCGAAAACTGTGATCACAT
66 AGGCTACTATGCGTACCAGAAAACTGTCAGCACAA
* *
79971170 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCACATGTGTAGTACTAAGTGC
1 GTGTAGCACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACTAAGTGC
* * *
79971235 AGGCTGCTATGCGTACCAGATAGCT-TCAGCTACAA
66 AGGCTACTATGCGTACCAGAAAACTGTCAGC-ACAA
79971270 GTGTAG
1 GTGTAG
79971276 AAATGGGAAA
Statistics
Matches: 94, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
99 3 0.03
100 91 0.97
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (100 bp):
GTGTAGCACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACTAAGTGC
AGGCTACTATGCGTACCAGAAAACTGTCAGCACAA
Found at i:79978281 original size:16 final size:18
Alignment explanation
Indices: 79978250--79978284 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
79978240 ACATTTCGTT
79978250 ATAACAATTAAATTTTTA
1 ATAACAATTAAATTTTTA
*
79978268 ATAA-AATTAATTTTTTA
1 ATAACAATTAAATTTTTA
79978285 TATTTTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (18 bp):
ATAACAATTAAATTTTTA
Found at i:79979212 original size:5 final size:5
Alignment explanation
Indices: 79979204--79979241 Score: 76
Period size: 5 Copynumber: 7.6 Consensus size: 5
79979194 TATTTTAAAT
79979204 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAA
1 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAA
79979242 ATTCTTTTAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 33 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
TAATA
Found at i:79979445 original size:6 final size:6
Alignment explanation
Indices: 79979436--79979460 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
79979426 TTAAAATATA
79979436 TAAATT TAAATT TAAATT TAAATT T
1 TAAATT TAAATT TAAATT TAAATT T
79979461 GAGTATAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (6 bp):
TAAATT
Found at i:79982563 original size:31 final size:31
Alignment explanation
Indices: 79982486--79982564 Score: 92
Period size: 30 Copynumber: 2.6 Consensus size: 31
79982476 TATAATCGTG
79982486 TTTGCATTATT-ATACCTTATAATCATCTACA
1 TTTGCATT-TTCATACCTTATAATCATCTACA
* * *
79982517 TTTAC-CTATCATACCTTATAATCGATC-ACA
1 TTTGCATTTTCATACCTTATAATC-ATCTACA
79982547 TTTGCATTTTCATACCTT
1 TTTGCATTTTCATACCTT
79982565 GTACATTGTA
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
29 1 0.03
30 21 0.54
31 17 0.44
ACGTcount: A:0.29, C:0.23, G:0.04, T:0.44
Consensus pattern (31 bp):
TTTGCATTTTCATACCTTATAATCATCTACA
Found at i:79984187 original size:11 final size:11
Alignment explanation
Indices: 79984171--79984197 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
79984161 ATGGTAAACT
79984171 AATTATAATTA
1 AATTATAATTA
79984182 AATTATAATTA
1 AATTATAATTA
79984193 AATTA
1 AATTA
79984198 AAGGCATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (11 bp):
AATTATAATTA
Found at i:79986974 original size:10 final size:10
Alignment explanation
Indices: 79986959--79987008 Score: 68
Period size: 10 Copynumber: 5.0 Consensus size: 10
79986949 TAATTTTAGG
79986959 ATTTAT-TTT
1 ATTTATCTTT
79986968 CATTTATCTTT
1 -ATTTATCTTT
79986979 ATTTATCTTT
1 ATTTATCTTT
79986989 ATTTAT-TTGT
1 ATTTATCTT-T
79986999 ATTTATCTTT
1 ATTTATCTTT
79987009 TAGAATTTCA
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
9 2 0.05
10 30 0.81
11 5 0.14
ACGTcount: A:0.20, C:0.08, G:0.02, T:0.70
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:79993450 original size:11 final size:11
Alignment explanation
Indices: 79993428--79993493 Score: 57
Period size: 11 Copynumber: 6.0 Consensus size: 11
79993418 AGGTAACCCA
79993428 ATTTTTATTTTT
1 ATTTTTA-TTTT
79993440 ATTTTTATTTT
1 ATTTTTATTTT
*
79993451 A-TTTTAGTTT
1 ATTTTTATTTT
*
79993461 ATTTTT-TCTT
1 ATTTTTATTTT
*
79993471 ATTATTT-TCTT
1 ATT-TTTATTTT
79993482 ATTTATTATTTT
1 ATTT-TTATTTT
79993494 CAGATATTAA
Statistics
Matches: 46, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
10 15 0.33
11 21 0.46
12 10 0.22
ACGTcount: A:0.18, C:0.03, G:0.02, T:0.77
Consensus pattern (11 bp):
ATTTTTATTTT
Found at i:79994386 original size:96 final size:97
Alignment explanation
Indices: 79994218--79994399 Score: 296
Period size: 96 Copynumber: 1.9 Consensus size: 97
79994208 TTTAAGAATG
* *
79994218 TGTTGGGCTGAGTAACCGGGGTGAGGTGCTTGGCTGTCATCTCTCTTCACGTCAAAAGGTTCGAT
1 TGTTGGGCTGAATAACCGGGGTGAGGTGCTTGGCTGTCATCTCTCTTCACGTCAAAAGGTTCAAT
*
79994283 ATGTTCTTAAG-AAAAATAAAAATTAGGGGTA
66 ATATTCTTAAGTAAAAATAAAAATTAGGGGTA
* *
79994314 TGTTGGGTTGAATAACCGGGGTTG-GGTGCTTGGCTGTCATCTCTCTTCGCGTCAAAAGGTTCAA
1 TGTTGGGCTGAATAACCGGGG-TGAGGTGCTTGGCTGTCATCTCTCTTCACGTCAAAAGGTTCAA
79994378 TATATTCTTAAGTAAAAATAAA
65 TATATTCTTAAGTAAAAATAAA
79994400 TAAATAAAAT
Statistics
Matches: 79, Mismatches: 5, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
96 68 0.86
97 11 0.14
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.32
Consensus pattern (97 bp):
TGTTGGGCTGAATAACCGGGGTGAGGTGCTTGGCTGTCATCTCTCTTCACGTCAAAAGGTTCAAT
ATATTCTTAAGTAAAAATAAAAATTAGGGGTA
Found at i:79995060 original size:10 final size:10
Alignment explanation
Indices: 79995045--79995103 Score: 77
Period size: 10 Copynumber: 5.9 Consensus size: 10
79995035 TAATTTTAGG
79995045 ATTTAT-TTT
1 ATTTATCTTT
79995054 CATTTATCTTT
1 -ATTTATCTTT
79995065 ATTTATCTTT
1 ATTTATCTTT
*
79995075 AATTATCTTT
1 ATTTATCTTT
79995085 ATTTAT-TTGT
1 ATTTATCTT-T
79995095 ATTTATCTT
1 ATTTATCTT
79995104 CTAGAATTTC
Statistics
Matches: 44, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
9 2 0.05
10 37 0.84
11 5 0.11
ACGTcount: A:0.22, C:0.08, G:0.02, T:0.68
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:79996116 original size:25 final size:25
Alignment explanation
Indices: 79996082--79996139 Score: 107
Period size: 25 Copynumber: 2.3 Consensus size: 25
79996072 CTCAACGACC
*
79996082 GCATCATGGATCGAAAGGAATCTTT
1 GCATCATGGATCAAAAGGAATCTTT
79996107 GCATCATGGATCAAAAGGAATCTTT
1 GCATCATGGATCAAAAGGAATCTTT
79996132 GCATCATG
1 GCATCATG
79996140 TTGGATACAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (25 bp):
GCATCATGGATCAAAAGGAATCTTT
Found at i:79998542 original size:18 final size:19
Alignment explanation
Indices: 79998499--79998544 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 19
79998489 GTGAAATAGT
79998499 TACAAAATAATACATAAAA
1 TACAAAATAATACATAAAA
* *
79998518 TA-AAAAAAATACATAAAT
1 TACAAAATAATACATAAAA
*
79998536 TTCAAAATA
1 TACAAAATA
79998545 TCGAATTTGT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
18 15 0.68
19 7 0.32
ACGTcount: A:0.67, C:0.09, G:0.00, T:0.24
Consensus pattern (19 bp):
TACAAAATAATACATAAAA
Found at i:80003706 original size:13 final size:13
Alignment explanation
Indices: 80003673--80003706 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
80003663 AATATTTGAC
*
80003673 TTGTTCTTAATTA
1 TTGTTTTTAATTA
80003686 TGTGTTTTTAATTA
1 T-TGTTTTTAATTA
80003700 TTGTTTT
1 TTGTTTT
80003707 AATATTCCAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.18, C:0.03, G:0.12, T:0.68
Consensus pattern (13 bp):
TTGTTTTTAATTA
Found at i:80011725 original size:15 final size:17
Alignment explanation
Indices: 80011705--80011737 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
80011695 GGAGTTTTGG
80011705 GTTTTC-TTATG-TTTT
1 GTTTTCTTTATGCTTTT
80011720 GTTTTCTTTATGCTTTT
1 GTTTTCTTTATGCTTTT
80011737 G
1 G
80011738 AGATGTTTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.38
16 5 0.31
17 5 0.31
ACGTcount: A:0.06, C:0.09, G:0.15, T:0.70
Consensus pattern (17 bp):
GTTTTCTTTATGCTTTT
Found at i:80016567 original size:8 final size:8
Alignment explanation
Indices: 80016554--80016578 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
80016544 ATACCATGCA
80016554 TTAATCCC
1 TTAATCCC
80016562 TTAATCCC
1 TTAATCCC
80016570 TTAATCCC
1 TTAATCCC
80016578 T
1 T
80016579 CATCCTTCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.36, G:0.00, T:0.40
Consensus pattern (8 bp):
TTAATCCC
Found at i:80021796 original size:21 final size:21
Alignment explanation
Indices: 80021759--80021799 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
80021749 TGTGAGTTTA
*
80021759 AAGGGTTTTGGGATTAAAATT
1 AAGGGTTTAGGGATTAAAATT
80021780 AAGGGTTTAAGGG-TTAAAAT
1 AAGGGTTT-AGGGATTAAAAT
80021800 CAAAGCAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.37, C:0.00, G:0.29, T:0.34
Consensus pattern (21 bp):
AAGGGTTTAGGGATTAAAATT
Found at i:80026488 original size:39 final size:40
Alignment explanation
Indices: 80026431--80026573 Score: 202
Period size: 39 Copynumber: 3.6 Consensus size: 40
80026421 CGGATTGATC
*
80026431 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATT
*
80026471 CTGGGCTAAG-CCCGAAGGCATTTGTGCGAGTGACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATT
* * *
80026510 CCGGGCTAAG-CCTGAAGGCATTTGTGCGAGTTACT-ATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-T
*
80026549 CCGGGCTAAGTCCCAAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
80026574 AGCTAGTAGC
Statistics
Matches: 93, Mismatches: 8, Indels: 4
0.89 0.08 0.04
Matches are distributed among these distances:
38 2 0.02
39 70 0.75
40 21 0.23
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATT
Found at i:80028479 original size:25 final size:24
Alignment explanation
Indices: 80028437--80028496 Score: 59
Period size: 24 Copynumber: 2.5 Consensus size: 24
80028427 ATTTCTCAAA
* *
80028437 AATTTAATTAATATAAAATATTAAT
1 AATTTAATAAATATAAAA-ATAAAT
80028462 AATTTAATAAAT-TGAAAAATAAAT
1 AATTTAATAAATAT-AAAAATAAAT
* *
80028486 GATTAAATAAA
1 AATTTAATAAA
80028497 ATTTAAGAGA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
24 15 0.50
25 15 0.50
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (24 bp):
AATTTAATAAATATAAAAATAAAT
Found at i:80029376 original size:29 final size:29
Alignment explanation
Indices: 80029317--80029376 Score: 77
Period size: 30 Copynumber: 2.1 Consensus size: 29
80029307 GCCCTTTGAA
* *
80029317 AATATTTACAAAAGAGAAATCTAATTATT
1 AATATTTACAAAAGAGAAACCAAATTATT
*
80029346 AATATTTACAAAAAGAGCAACCAAATT-TT
1 AATATTTAC-AAAAGAGAAACCAAATTATT
80029375 AA
1 AA
80029377 AAATAGTTCA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
29 13 0.48
30 14 0.52
ACGTcount: A:0.53, C:0.10, G:0.07, T:0.30
Consensus pattern (29 bp):
AATATTTACAAAAGAGAAACCAAATTATT
Found at i:80036203 original size:21 final size:20
Alignment explanation
Indices: 80036179--80036224 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
80036169 TGAATTGCTA
80036179 TCAACCTAACA-TGAATTAAAT
1 TCAACCTAA-ATTG-ATTAAAT
*
80036200 TCAATCTAAATTGATTAAAT
1 TCAACCTAAATTGATTAAAT
80036220 T-AACC
1 TCAACC
80036225 ATTCCAACAA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 3 0.14
20 9 0.41
21 10 0.45
ACGTcount: A:0.46, C:0.17, G:0.04, T:0.33
Consensus pattern (20 bp):
TCAACCTAAATTGATTAAAT
Found at i:80046864 original size:48 final size:49
Alignment explanation
Indices: 80046809--80046912 Score: 140
Period size: 48 Copynumber: 2.2 Consensus size: 49
80046799 CCATATAGAA
* * * * *
80046809 ACAAAAATTATTTCAGTGGGCATGTTTATCATGTG-ATCAGATTTTGTT
1 ACAAAAATTAGTACAGTGGGCATGCTTAACATGTGAATCAAATTTTGTT
*
80046857 ACAAAAA-TAGTACATTGGGCATGCTTAACATGTGAATCAAATTTTGTT
1 ACAAAAATTAGTACAGTGGGCATGCTTAACATGTGAATCAAATTTTGTT
80046905 ACAAAAAT
1 ACAAAAAT
80046913 AATAGGCATG
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
47 22 0.46
48 26 0.54
ACGTcount: A:0.37, C:0.12, G:0.16, T:0.36
Consensus pattern (49 bp):
ACAAAAATTAGTACAGTGGGCATGCTTAACATGTGAATCAAATTTTGTT
Found at i:80051865 original size:22 final size:20
Alignment explanation
Indices: 80051823--80051862 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
80051813 GTTAAGTTTC
*
80051823 CCCAAGCCACATGGGTGTGT
1 CCCAAGCCACACGGGTGTGT
*
80051843 CCCAAGCCACACGAGTGTGT
1 CCCAAGCCACACGGGTGTGT
80051863 GTCACCAGAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.23, C:0.33, G:0.28, T:0.17
Consensus pattern (20 bp):
CCCAAGCCACACGGGTGTGT
Found at i:80061191 original size:32 final size:29
Alignment explanation
Indices: 80061151--80061209 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 29
80061141 TTTGTTTGTT
80061151 TTATTATTATAATAATATATAATATATATAC
1 TTATTATTA-AATAA-ATATAATATATATAC
* *
80061182 TTATATATTAAGTAAATATATTATATAT
1 TTAT-TATTAAATAAATATAATATATAT
80061210 TAAATTCACA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 12 0.48
31 8 0.32
32 5 0.20
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (29 bp):
TTATTATTAAATAAATATAATATATATAC
Found at i:80079475 original size:6 final size:6
Alignment explanation
Indices: 80079464--80079488 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
80079454 ATTGAAGGGG
80079464 CTTCCT CTTCCT CTTCCT CTTCCT C
1 CTTCCT CTTCCT CTTCCT CTTCCT C
80079489 ATCATCTAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (6 bp):
CTTCCT
Found at i:80092150 original size:11 final size:11
Alignment explanation
Indices: 80092127--80092156 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
80092117 TTAAAAAATA
80092127 TAATTTATAATT
1 TAATTT-TAATT
80092139 TAATTTTAATT
1 TAATTTTAATT
80092150 TAATTTT
1 TAATTTT
80092157 TCAAAATTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 12 0.67
12 6 0.33
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (11 bp):
TAATTTTAATT
Found at i:80096739 original size:22 final size:23
Alignment explanation
Indices: 80096705--80096747 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
80096695 TATATATGTT
* *
80096705 ATTTTTTTTTATATAT-TATCAC
1 ATTTATTTATATATATATATCAC
80096727 ATTTATTTATATATATATATC
1 ATTTATTTATATATATATATC
80096748 TATATGTTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (23 bp):
ATTTATTTATATATATATATCAC
Found at i:80109076 original size:206 final size:206
Alignment explanation
Indices: 80108390--80109373 Score: 1519
Period size: 206 Copynumber: 4.8 Consensus size: 206
80108380 TAGGCCGTAG
* * * *
80108390 CATAGCAGATCTCACCTTCAGAT-GTTTATACTGAAG-GAGATCCAAGAGGATTTGGCATCCTTG
1 CATAGCAGATCTCACCTTCAGATAATTT-CACTGAAGCAAGATCCAAGATGATTTGGCATCCTTG
*** * *
80108453 TGCTTACAAGGAGTGAATCGAAGACATAGCTAATTTAGCTTTCACGTGTTTACGATGAAGCAAAT
65 TGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAAT
* * *
80108518 CTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCAAAGTCTGGCATCTCTACTTTGAC
130 CTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCGAC
*
80108583 GGGGAGAAGATA
195 GGGGAGCAGATA
* * * * * *
80108595 CATAGCAGATCTCACTTTCAGAT-GTTTATACTAAAG-GAGATCCGAGATGATTTGGCATCCTTG
1 CATAGCAGATCTCACCTTCAGATAATTT-CACTGAAGCAAGATCCAAGATGATTTGGCATCCTTG
* * * *
80108658 TGCTTATAAGGAACGAATCGAAGACATAGTTGATTTGGCTTTCACGTGTTTATGATGAAGCAAAT
65 TGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAAT
*
80108723 CTAAGATGATTTGGCATCTCTGTATTGTCTGAGAACAAATCGAAGTCTGG-ATCTCCACTTCGAC
130 CTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCGAC
80108787 GGGGAGCAGATA
195 GGGGAGCAGATA
*
80108799 CATAGCAGATCTCACCTTCAGATAATTTCACTGAAGCAAGATCCAAGATGATTTGGCATTCTTGT
1 CATAGCAGATCTCACCTTCAGATAATTTCACTGAAGCAAGATCCAAGATGATTTGGCATCCTTGT
*
80108864 GCTTACAAGGAACAAATCGAAGACATAGTTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATC
66 GCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATC
* * * *
80108929 TAAGATGATTTGGCATCTTTGTATTGTCAGAGAACAAATTGAATTCTGGCATCTCCACTTCGATG
131 TAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCGACG
80108994 GGGAGCAGATA
196 GGGAGCAGATA
* * * *
80109005 CATAGTAGATCTCACCTTCAAATAATTTCACTGAAGCAATATCCAAGATGATTTGGCATTCTTGT
1 CATAGCAGATCTCACCTTCAGATAATTTCACTGAAGCAAGATCCAAGATGATTTGGCATCCTTGT
80109070 GCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATC
66 GCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATC
* *
80109135 TAAGATGATTTGACATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCATCTCCACTTCGACG
131 TAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCGACG
80109200 GGGAGCAGATA
196 GGGAGCAGATA
* *
80109211 CATGGTAGATCTCACCTTCAGATAATTTCACTGAAGCAAGATCCAAGATGATTTGGCATCCTTGT
1 CATAGCAGATCTCACCTTCAGATAATTTCACTGAAGCAAGATCCAAGATGATTTGGCATCCTTGT
* * * * *
80109276 GCTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGTTTTCACTTGTTTACGCTGAAACAAATC
66 GCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATC
*
80109341 TAAGATGATTTGGCATCTCTGTATTGGCAGAGA
131 TAAGATGATTTGGCATCTCTGTATTGTCAGAGA
80109374 GCAGATAGAA
Statistics
Matches: 724, Mismatches: 52, Indels: 5
0.93 0.07 0.01
Matches are distributed among these distances:
204 51 0.07
205 300 0.41
206 373 0.52
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (206 bp):
CATAGCAGATCTCACCTTCAGATAATTTCACTGAAGCAAGATCCAAGATGATTTGGCATCCTTGT
GCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATC
TAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCGACG
GGGAGCAGATA
Found at i:80112918 original size:46 final size:46
Alignment explanation
Indices: 80112868--80113043 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
80112858 TATTTGGGCA
80112868 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
* * * *
80112914 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAA-T--G
* * * *
80112959 CATCTGAGCTTGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
* *
80113007 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGG
80113044 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.58
47 25 0.24
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.18, G:0.30, T:0.32
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
Found at i:80115985 original size:15 final size:15
Alignment explanation
Indices: 80115946--80116024 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
80115936 GTATCTTGGG
*
80115946 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
80115961 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
80115976 TTTCTTTATTC-GGG
1 TTTCTTTATTCTGGA
*
80115990 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
80116005 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
80116019 TTTCTT
1 TTTCTT
80116025 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
13 2 0.04
14 17 0.32
15 32 0.60
16 2 0.04
ACGTcount: A:0.10, C:0.18, G:0.14, T:0.58
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:80116009 original size:29 final size:29
Alignment explanation
Indices: 80115937--80116023 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 29
80115927 CATAGTATCG
* * * *
80115937 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTC-GGATTTCTC
*
80115967 TAT-TCTGGATTTCTTTATTCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCGGATTTCTC
*
80115996 TATCTTGGATTTCTTTATTCGGTTTTCT
1 TATCTTGGATTTCTTTATTCGGATTTCT
80116024 TGTTATCTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 32 0.65
30 17 0.35
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.56
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCGGATTTCTC
Found at i:80118546 original size:46 final size:46
Alignment explanation
Indices: 80118398--80118560 Score: 190
Period size: 46 Copynumber: 3.5 Consensus size: 46
80118388 GGGCATCCGA
* * * *
80118398 AGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTG
1 AGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTG
* * *
80118444 AGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCCGAGCTCGTTG
1 AGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC--CCGAGCTCGTTG
80118491 AGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTG
1 AGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTG
80118537 AGTTGAGTCCGAGTTCACTTATGG
1 AGTTGAGTCCGAGTTCACTTATGG
80118561 GCGGGTTACA
Statistics
Matches: 98, Mismatches: 10, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 52 0.53
47 26 0.27
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (46 bp):
AGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTG
Found at i:80126313 original size:65 final size:65
Alignment explanation
Indices: 80126232--80126362 Score: 235
Period size: 65 Copynumber: 2.0 Consensus size: 65
80126222 AGTCCCATGC
* *
80126232 ATCAAATAATACTAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCATGTCAACCTT
1 ATCAAATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
*
80126297 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
1 ATCAAATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
80126362 A
1 A
80126363 ACCCTAGGGG
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
65 63 1.00
ACGTcount: A:0.42, C:0.19, G:0.14, T:0.25
Consensus pattern (65 bp):
ATCAAATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
Found at i:80126398 original size:27 final size:27
Alignment explanation
Indices: 80126370--80126442 Score: 67
Period size: 27 Copynumber: 2.7 Consensus size: 27
80126360 TTAACCCTAG
* *
80126370 GGGTATATCAGTAATTTTGCTCCTA-A
1 GGGTATATCAGTAATTTTCCACCTATA
* *
80126396 GGGTAAATCTGTAAATTTTCCACCTATAA
1 GGGTATATCAGT-AATTTTCCACCTAT-A
* *
80126425 AGGTATTTCAGTAATTTT
1 GGGTATATCAGTAATTTT
80126443 ATCAATTTTA
Statistics
Matches: 36, Mismatches: 8, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
26 10 0.28
27 11 0.31
28 6 0.17
29 9 0.25
ACGTcount: A:0.30, C:0.14, G:0.16, T:0.40
Consensus pattern (27 bp):
GGGTATATCAGTAATTTTCCACCTATA
Found at i:80130094 original size:65 final size:65
Alignment explanation
Indices: 80130019--80130149 Score: 253
Period size: 65 Copynumber: 2.0 Consensus size: 65
80130009 AGTCCCATGC
80130019 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
*
80130084 ATCAGATAATAATAACATGGCATGTAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
80130149 A
1 A
80130150 ATCCTAGGGG
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
65 65 1.00
ACGTcount: A:0.42, C:0.18, G:0.15, T:0.25
Consensus pattern (65 bp):
ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
Found at i:80134145 original size:17 final size:18
Alignment explanation
Indices: 80134114--80134156 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
80134104 GTTAATTCTG
*
80134114 GTATCTGTTAATCTGT-T
1 GTATCTGATAATCTGTCT
* *
80134131 TTATCTGATATTCTGTCT
1 GTATCTGATAATCTGTCT
80134149 GTATCTGA
1 GTATCTGA
80134157 CTATAGGGCG
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 13 0.62
18 8 0.38
ACGTcount: A:0.19, C:0.14, G:0.16, T:0.51
Consensus pattern (18 bp):
GTATCTGATAATCTGTCT
Found at i:80136256 original size:6 final size:6
Alignment explanation
Indices: 80136245--80136273 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
80136235 AGGTTTCCAA
80136245 AAATGG AAATGG AAATGG AAATGG AAATG
1 AAATGG AAATGG AAATGG AAATGG AAATG
80136274 ATCCATTTGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.31, T:0.17
Consensus pattern (6 bp):
AAATGG
Found at i:80147724 original size:36 final size:36
Alignment explanation
Indices: 80147673--80147743 Score: 106
Period size: 36 Copynumber: 2.0 Consensus size: 36
80147663 AGTAAACTCT
* * * *
80147673 ATTCAGTTCAGCAGCCTTTCGAGTCTATTCTAACTG
1 ATTCAATTCAACAGCCTTTCGAATCAATTCTAACTG
80147709 ATTCAATTCAACAGCCTTTCGAATCAATTCTAACT
1 ATTCAATTCAACAGCCTTTCGAATCAATTCTAACT
80147744 AATGTGCTCC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.28, C:0.25, G:0.11, T:0.35
Consensus pattern (36 bp):
ATTCAATTCAACAGCCTTTCGAATCAATTCTAACTG
Found at i:80152184 original size:41 final size:41
Alignment explanation
Indices: 80152122--80152219 Score: 135
Period size: 41 Copynumber: 2.4 Consensus size: 41
80152112 TTGCAGACAC
* **
80152122 TTGACAGCTTGTGTGAACAGCACCGTGTAGCTACGTCTTGA
1 TTGACAGCTTATGTGAACAGCACCACGTAGCTACGTCTTGA
80152163 TTGACAGCTTATGT-AACCAGCACCACGTAGCTACGTCTTGA
1 TTGACAGCTTATGTGAA-CAGCACCACGTAGCTACGTCTTGA
* *
80152204 CTGACAGCTTGTGTGA
1 TTGACAGCTTATGTGA
80152220 GCAAGCCCAT
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
40 2 0.04
41 47 0.94
42 1 0.02
ACGTcount: A:0.23, C:0.23, G:0.24, T:0.29
Consensus pattern (41 bp):
TTGACAGCTTATGTGAACAGCACCACGTAGCTACGTCTTGA
Found at i:80153627 original size:19 final size:18
Alignment explanation
Indices: 80153601--80153652 Score: 79
Period size: 18 Copynumber: 2.9 Consensus size: 18
80153591 GTTTAGTGGA
*
80153601 AAAATTTTCT-AAGTTTGT
1 AAAATTTTTTAAAG-TTGT
80153619 AAAATTTTTTAAAGTTGT
1 AAAATTTTTTAAAGTTGT
80153637 AAAATTTTTTAAAGTT
1 AAAATTTTTTAAAGTT
80153653 CTTGGTTTAG
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
18 29 0.91
19 3 0.09
ACGTcount: A:0.38, C:0.02, G:0.10, T:0.50
Consensus pattern (18 bp):
AAAATTTTTTAAAGTTGT
Found at i:80159299 original size:15 final size:15
Alignment explanation
Indices: 80159279--80159307 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
80159269 AAAAAGGTAA
80159279 AATAACAACAACAAC
1 AATAACAACAACAAC
80159294 AATAACAACAACAA
1 AATAACAACAACAA
80159308 TAACAATCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.69, C:0.24, G:0.00, T:0.07
Consensus pattern (15 bp):
AATAACAACAACAAC
Found at i:80159302 original size:12 final size:12
Alignment explanation
Indices: 80159285--80159313 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
80159275 GTAAAATAAC
80159285 AACAACAACAAT
1 AACAACAACAAT
80159297 AACAACAACAAT
1 AACAACAACAAT
80159309 AACAA
1 AACAA
80159314 TCATTCTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.69, C:0.24, G:0.00, T:0.07
Consensus pattern (12 bp):
AACAACAACAAT
Found at i:80159341 original size:10 final size:10
Alignment explanation
Indices: 80159326--80159351 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
80159316 ATTCTATTTC
80159326 TTTTTTTCTT
1 TTTTTTTCTT
80159336 TTTTTTTCTT
1 TTTTTTTCTT
80159346 TTTTTT
1 TTTTTT
80159352 CCATATACAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (10 bp):
TTTTTTTCTT
Found at i:80159697 original size:145 final size:147
Alignment explanation
Indices: 80159515--80159856 Score: 431
Period size: 145 Copynumber: 2.3 Consensus size: 147
80159505 AAATTTTTCA
* *
80159515 TTTTTTT-AAAGAGAAAGTTTATATTTTTAAAAGAAAAATATGTTTTTTAGTCATATTAAAGGAA
1 TTTTTTTAAAAGAGAAAGTTTAGATTTTTAAAATAAAAATATGTTTTTTAGTCATATTAAAGGAA
* * *
80159579 AATCTT-AAATTTATAAAACAAAGTTTTGATATTTTTAAACTATTT-TGAAACAGAGCTTT-GGT
66 AATCTTAAAATTTATAAAACAAAATTTTGATATTTTTAAACTATTTCT-AAACAAAACTTTAGGT
80159641 TTAAGAAAAATAGTGATT
130 TTAAGAAAAATAGTGATT
* *
80159659 TTTCTTTAAAAGAGAAAGTTTAGATTTTTAAAATAAAAATATGTTTTTTAGTCATTTTAAAGGAA
1 TTTTTTTAAAAGAGAAAGTTTAGATTTTTAAAATAAAAATATGTTTTTTAGTCATATTAAAGGAA
* * * * * **
80159724 AATTTTAAAATTTTTAAAACAAAATTTTGATCTTTTTCAACTATTTCTAAATAAAACTTTAATTT
66 AATCTTAAAATTTATAAAACAAAATTTTGATATTTTTAAACTATTTCTAAACAAAACTTT-AGGT
80159789 TTAAGAAAAATAGTGATTGTTT
130 TTAAGAAAAATAGTGA----TT
80159811 TTTTTTTAAAAAAAAGAGAAAGTTTAGATTTTTAAAAATAAAAATA
1 TTTTTTT----AAAAGAGAAAGTTTAGATTTTT-AAAATAAAAATA
80159857 GTCATTTTCA
Statistics
Matches: 169, Mismatches: 15, Indels: 15
0.85 0.08 0.08
Matches are distributed among these distances:
144 6 0.04
145 59 0.35
146 44 0.26
147 1 0.01
148 17 0.10
152 8 0.05
156 22 0.13
157 12 0.07
ACGTcount: A:0.43, C:0.04, G:0.10, T:0.42
Consensus pattern (147 bp):
TTTTTTTAAAAGAGAAAGTTTAGATTTTTAAAATAAAAATATGTTTTTTAGTCATATTAAAGGAA
AATCTTAAAATTTATAAAACAAAATTTTGATATTTTTAAACTATTTCTAAACAAAACTTTAGGTT
TAAGAAAAATAGTGATT
Found at i:80169171 original size:6 final size:6
Alignment explanation
Indices: 80169160--80169217 Score: 53
Period size: 6 Copynumber: 9.7 Consensus size: 6
80169150 TCCTTCTATC
* * * * * *
80169160 TTTTTA TTTTTA TCTCTA TTTTTC TTTTTC TTTTTC TTTTTC TTTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
*
80169208 TTTTGA TTTT
1 TTTTTA TTTT
80169218 ATTATTTTCA
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 45 1.00
ACGTcount: A:0.09, C:0.10, G:0.02, T:0.79
Consensus pattern (6 bp):
TTTTTA
Found at i:80169211 original size:18 final size:18
Alignment explanation
Indices: 80169158--80169211 Score: 63
Period size: 18 Copynumber: 3.0 Consensus size: 18
80169148 AATCCTTCTA
* * *
80169158 TCTTTTTATTTTTATCTC
1 TCTTTTTCTTTTTATTTT
* *
80169176 TATTTTTCTTTTTCTTTT
1 TCTTTTTCTTTTTATTTT
80169194 TCTTTTTCTTTTTATTTT
1 TCTTTTTCTTTTTATTTT
80169212 GATTTTATTA
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.07, C:0.13, G:0.00, T:0.80
Consensus pattern (18 bp):
TCTTTTTCTTTTTATTTT
Found at i:80169230 original size:6 final size:6
Alignment explanation
Indices: 80169178--80169211 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
80169168 TTTATCTCTA
*
80169178 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTA TTTT
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTT
80169212 GATTTTATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.03, C:0.12, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTTC
Found at i:80174896 original size:23 final size:22
Alignment explanation
Indices: 80174833--80174907 Score: 64
Period size: 23 Copynumber: 3.3 Consensus size: 22
80174823 TAGCTCATTG
*
80174833 GAGCTTACCGTTTTAACTCG-TA
1 GAGCTTACCG-TTTAGCTCGATA
* **
80174855 TGAGTTTACTATTTAGCTCGATA
1 -GAGCTTACCGTTTAGCTCGATA
80174878 GAGCTTACCGTTTCAGCTC-ATTA
1 GAGCTTACCGTTT-AGCTCGA-TA
80174901 GAGCTTA
1 GAGCTTA
80174908 TTGTTCATCA
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
22 19 0.45
23 23 0.55
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (22 bp):
GAGCTTACCGTTTAGCTCGATA
Found at i:80182719 original size:23 final size:24
Alignment explanation
Indices: 80182677--80182724 Score: 89
Period size: 23 Copynumber: 2.0 Consensus size: 24
80182667 GGTTTCTCGA
80182677 TGATAGCCACACCCATGACGAAGC
1 TGATAGCCACACCCATGACGAAGC
80182701 TGATAGCCACA-CCATGACGAAGC
1 TGATAGCCACACCCATGACGAAGC
80182724 T
1 T
80182725 ACTTCAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 13 0.54
24 11 0.46
ACGTcount: A:0.33, C:0.31, G:0.21, T:0.15
Consensus pattern (24 bp):
TGATAGCCACACCCATGACGAAGC
Found at i:80186596 original size:79 final size:81
Alignment explanation
Indices: 80186460--80186642 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
80186450 TCGAATGATG
* *
80186460 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
80186524 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
80186539 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
80186601 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
80186619 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
80186643 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:80186658 original size:40 final size:40
Alignment explanation
Indices: 80186461--80186644 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
80186451 CGAATGATGT
* * * *
80186461 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
80186501 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
80186541 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
80186579 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
80186620 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
80186645 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:80186666 original size:79 final size:79
Alignment explanation
Indices: 80186513--80186677 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
80186503 GGACTAAGAT
* **
80186513 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
80186578 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
80186592 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
80186655 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
80186671 CCGAAGG
1 CCGAAGG
80186678 TACGTGATTC
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:80191590 original size:28 final size:28
Alignment explanation
Indices: 80191557--80191612 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
80191547 ATTCAGATGC
80191557 GTTGAATTATATGTTTGTGGTACTATGT
1 GTTGAATTATATGTTTGTGGTACTATGT
*
80191585 GTTGAATTATATGTTTGTGGTATTATGT
1 GTTGAATTATATGTTTGTGGTACTATGT
80191613 TCGTAATGGT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.21, C:0.02, G:0.25, T:0.52
Consensus pattern (28 bp):
GTTGAATTATATGTTTGTGGTACTATGT
Found at i:80191912 original size:48 final size:48
Alignment explanation
Indices: 80191835--80192211 Score: 398
Period size: 48 Copynumber: 7.8 Consensus size: 48
80191825 GGTTATGTGT
80191835 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGA
1 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGA
** * * * * ***
80191883 GAGTTAGTGTAAGACTATGTCTGGGACATGGCATCGGCCTCAATATGCA
1 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATG-A
*
80191932 -AGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGT
1 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGA
* * **
80191979 GAGCCAGTGTAAGACCATGTTTGGAATATGGTATCGGCATTGTTATCT
1 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGA
* * * ** *
80192027 GAGCCAGTGTAAGACAATGTTTGGAACAGGGCAACAACATTGTTATGT
1 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGA
* * * *
80192075 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCACTGATGTATGA
1 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTG-T-TATGA
* * **
80192125 GAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCAACGATGTATGA
1 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTG-T-TATGA
** **
80192175 GAGTTAGTGTAAGACCATGTCCAGG-ACATGGCATCGG
1 GAGCCAGTGTAAGACCATGT-TTGGAACATGGCATCGG
80192212 TATTTTACCC
Statistics
Matches: 276, Mismatches: 48, Indels: 8
0.83 0.14 0.02
Matches are distributed among these distances:
48 192 0.70
49 2 0.01
50 80 0.29
51 2 0.01
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (48 bp):
GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGA
Found at i:80198644 original size:48 final size:48
Alignment explanation
Indices: 80198586--80198854 Score: 216
Period size: 48 Copynumber: 5.4 Consensus size: 48
80198576 GGTTATGTGT
* * ***
80198586 GAGCCAGTGTAAGACCGTGTTTGGAACATGACATCGACATTGTTATGA
1 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATCAATATGA
* * * * *
80198634 GAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCAATATGC
1 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATCAATATGA
* * *
80198682 TAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCCTCAATATGCTA
1 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATCAATATG--A
* * * * * * * *
80198732 GGTGAGTCAGTGTCAGACCATATTTGGGACATGGCATTAGTAC-TGATGTGTGA
1 ---GAGCCAGTGTAAGACCATGTTTGGAACATGGCA-TCG-ACATCA-ATATGA
* * *
80198785 GAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGACACCAATGAATGA
1 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATCAAT--ATGA
*
80198835 GAGTCAGTGTAAGACCATGT
1 GAGCCAGTGTAAGACCATGT
80198855 CCAGGACATG
Statistics
Matches: 175, Mismatches: 35, Indels: 20
0.76 0.15 0.09
Matches are distributed among these distances:
48 85 0.49
49 3 0.02
50 50 0.29
53 29 0.17
54 4 0.02
55 4 0.02
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (48 bp):
GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATCAATATGA
Found at i:80202657 original size:53 final size:53
Alignment explanation
Indices: 80202594--80202702 Score: 209
Period size: 53 Copynumber: 2.1 Consensus size: 53
80202584 GTCAGTCTGA
80202594 GAGTATGATTCAGATACTGGAGGATATGCTGAGGAGTTGTGTTATCGATTTTC
1 GAGTATGATTCAGATACTGGAGGATATGCTGAGGAGTTGTGTTATCGATTTTC
*
80202647 GAGTATGATTCAGATACTGGAGGATATGTTGAGGAGTTGTGTTATCGATTTTC
1 GAGTATGATTCAGATACTGGAGGATATGCTGAGGAGTTGTGTTATCGATTTTC
80202700 GAG
1 GAG
80202703 GCAGTTGGGA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 55 1.00
ACGTcount: A:0.25, C:0.08, G:0.31, T:0.36
Consensus pattern (53 bp):
GAGTATGATTCAGATACTGGAGGATATGCTGAGGAGTTGTGTTATCGATTTTC
Found at i:80209256 original size:23 final size:21
Alignment explanation
Indices: 80209230--80209272 Score: 59
Period size: 23 Copynumber: 2.0 Consensus size: 21
80209220 AATCATTTTA
*
80209230 ATTAAATAAATTATTAAAATTTC
1 ATTAAAAAAATTA--AAAATTTC
80209253 ATTAAAAAAATTAAAAATTT
1 ATTAAAAAAATTAAAAATTT
80209273 TAAAAATTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 7 0.37
23 12 0.63
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (21 bp):
ATTAAAAAAATTAAAAATTTC
Found at i:80209968 original size:21 final size:21
Alignment explanation
Indices: 80209943--80209985 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
80209933 TATTCGTAAC
80209943 TATTTAATTTAAAG-ATTAATT
1 TATTT-ATTTAAAGTATTAATT
* *
80209964 TATTTTTTTAAGGTATTAATT
1 TATTTATTTAAAGTATTAATT
80209985 T
1 T
80209986 GTTTGTTAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.58
Consensus pattern (21 bp):
TATTTATTTAAAGTATTAATT
Found at i:80212632 original size:21 final size:21
Alignment explanation
Indices: 80212591--80212632 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
80212581 TATCATGATT
* *
80212591 TAGTTTATTGCATAAATTTTA
1 TAGTTTATAGCATAAAGTTTA
80212612 TAGTTT-TAGCATAATAGTTTA
1 TAGTTTATAGCATAA-AGTTTA
80212633 ATTTATCTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.33, C:0.05, G:0.12, T:0.50
Consensus pattern (21 bp):
TAGTTTATAGCATAAAGTTTA
Found at i:80232123 original size:49 final size:49
Alignment explanation
Indices: 80232066--80232293 Score: 242
Period size: 49 Copynumber: 4.6 Consensus size: 49
80232056 TGTGGATTAA
* * **
80232066 TAAGTGCAGGCTACTATGTGTACCGGATTATTGGTTGCATGTGTAGTAC
1 TAAGTGCAGGCTACTATGTGTACCAGATAATTGGTCACATGTGTAGTAC
* * *
80232115 TAAGTGCAGGCTACTATGCGTACCCA-ATAACTTCGATCACGTGTGTAGTAC
1 TAAGTGCAGGCTACTATGTGTA-CCAGATAA-TT-GGTCACATGTGTAGTAC
* * * ** *
80232166 TACGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
1 TAAGTGCAGGCTACTATGTGTACCAGATAATT-GGTCACATGTGTAGTAC
* * * * *
80232216 TAAGTGCAGGCTACTACGTATACTAGATAATTGGTCACATATGTAATAC
1 TAAGTGCAGGCTACTATGTGTACCAGATAATTGGTCACATGTGTAGTAC
*
80232265 TAAGTGCAGGCTACTATGCGTACCAGATA
1 TAAGTGCAGGCTACTATGTGTACCAGATA
80232294 GCTTTCGCTA
Statistics
Matches: 147, Mismatches: 28, Indels: 8
0.80 0.15 0.04
Matches are distributed among these distances:
49 63 0.43
50 50 0.34
51 34 0.23
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (49 bp):
TAAGTGCAGGCTACTATGTGTACCAGATAATTGGTCACATGTGTAGTAC
Found at i:80232323 original size:150 final size:150
Alignment explanation
Indices: 80232048--80232326 Score: 348
Period size: 150 Copynumber: 1.9 Consensus size: 150
80232038 ATCTATTGTG
* * * * * ** * *
80232048 AGGTCACGTGTGGATTAATAAGTGCAGGCTACTATGTGTACCGGATTATTGGTTGCATGTGTAGT
1 AGGTCACGTGTGGAGTAATAAGTGCAGGCTACTACGTATACCAGATAATTGGTCACATATGTAAT
* * *
80232113 ACTAAGTGCAGGCTACTATGCGTACCCAATAACTTCGATCACGTGTGTAGTACTACGTGCAGGCT
66 ACTAAGTGCAGGCTACTATGCGTACCCAATAACTTCGATCAAGTGTGTAGAAATACGTGCAGGCT
80232178 ACTACGTGTATCAGATGGTT
131 ACTACGTGTATCAGATGGTT
* * *
80232198 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTATACTAGATAATTGGTCACATATGTAAT
1 AGGTCACGTGTGGAGTAATAAGTGCAGGCTACTACGTATACCAGATAATTGGTCACATATGTAAT
* * *
80232263 ACTAAGTGCAGGCTACTATGCGTA-CCAGATAGCTTTCGCTACAAGTGTG-A-AAATATGTGCAG
66 ACTAAGTGCAGGCTACTATGCGTACCCA-ATAAC-TTCGAT-CAAGTGTGTAGAAATACGTGCAG
80232325 GC
128 GC
80232327 AACTGAGTAT
Statistics
Matches: 108, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
149 3 0.03
150 92 0.85
151 6 0.06
152 7 0.06
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (150 bp):
AGGTCACGTGTGGAGTAATAAGTGCAGGCTACTACGTATACCAGATAATTGGTCACATATGTAAT
ACTAAGTGCAGGCTACTATGCGTACCCAATAACTTCGATCAAGTGTGTAGAAATACGTGCAGGCT
ACTACGTGTATCAGATGGTT
Found at i:80234382 original size:24 final size:24
Alignment explanation
Indices: 80234282--80234383 Score: 123
Period size: 24 Copynumber: 4.2 Consensus size: 24
80234272 AAGTCTGTCA
*
80234282 GGAGAGGATTTAGGAGTTGATAAAG
1 GGAGAGGATTTAGGAGCTGAT-AAG
* * *
80234307 GGATAGGATTTAGAAGTTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
* * *
80234331 GGATAAGATTTAAGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
80234355 GGAGAGGATTTAGGAGCTGATTAG
1 GGAGAGGATTTAGGAGCTGATAAG
80234379 GGAGA
1 GGAGA
80234384 ACAGTGTTGG
Statistics
Matches: 67, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
24 48 0.72
25 19 0.28
ACGTcount: A:0.36, C:0.02, G:0.37, T:0.25
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGATAAG
Found at i:80235861 original size:27 final size:26
Alignment explanation
Indices: 80235782--80235895 Score: 140
Period size: 27 Copynumber: 4.3 Consensus size: 26
80235772 ATGGAGGAAG
*
80235782 TGTTCTGGTGGCTATGCCACATTTATC
1 TGTTCTGGTGGCTCTGCCACA-TTATC
*
80235809 TGATCTGGTGGCT-TGCCACATATATC
1 TGTTCTGGTGGCTCTGCCACAT-TATC
*
80235835 TGTTCTGGTAGCTCTGCCACAATTATC
1 TGTTCTGGTGGCTCTGCCAC-ATTATC
* * *
80235862 TGTTCTGGTGACTCTGTCACATCATC
1 TGTTCTGGTGGCTCTGCCACATTATC
80235888 TGTTCTGG
1 TGTTCTGG
80235896 CAGCAATGCT
Statistics
Matches: 77, Mismatches: 7, Indels: 7
0.85 0.08 0.08
Matches are distributed among these distances:
25 1 0.01
26 35 0.45
27 39 0.51
28 2 0.03
ACGTcount: A:0.16, C:0.24, G:0.22, T:0.39
Consensus pattern (26 bp):
TGTTCTGGTGGCTCTGCCACATTATC
Found at i:80235862 original size:53 final size:53
Alignment explanation
Indices: 80235782--80235904 Score: 149
Period size: 53 Copynumber: 2.3 Consensus size: 53
80235772 ATGGAGGAAG
* * * *
80235782 TGTTCTGGTGGCTATGCCACATTTATCTGATCTGGTGGCT-TGCCACATATATC
1 TGTTCTGGTAGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACAT-CATC
* * *
80235835 TGTTCTGGTAGCTCTGCCACAATTATCTGTTCTGGTGACTCTGTCACATCATC
1 TGTTCTGGTAGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATCATC
* *
80235888 TGTTCTGGCAGCAATGC
1 TGTTCTGGTAGCTATGC
80235905 TGCATATTTC
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
53 52 0.88
54 7 0.12
ACGTcount: A:0.17, C:0.24, G:0.22, T:0.37
Consensus pattern (53 bp):
TGTTCTGGTAGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATCATC
Found at i:80239443 original size:26 final size:26
Alignment explanation
Indices: 80239408--80239457 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
80239398 AATGTGAAAG
*
80239408 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
80239434 GGGGTTGCTAAGTGCTGATTCCCC
1 GGGGTTGCTAAGTGCTGATTCCCC
80239458 AGTTCATTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.12, C:0.24, G:0.34, T:0.30
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:80239540 original size:103 final size:103
Alignment explanation
Indices: 80239329--80239593 Score: 408
Period size: 103 Copynumber: 2.6 Consensus size: 103
80239319 GTTGTACATA
** *
80239329 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
* **
80239394 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCC
66 CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCC
*
80239432 GAGGGGTTGCTAAGTGCTGATTCCCC-AGTTCATTGGTGGTGCTAAGTGCGATATCCACCGTATC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGA-TTCATTGGTGGTGCTAAGTGCGATATCCACCGTATC
80239496 TCTGAAAT-AAAAAGGGGGTTGCTATGTGCTGATTCCCCC
65 TCTGAAATGAAAAAGGGGGTTGCTATGTGCTGATT-CCCC
* * *
80239535 AAGGGGTTGCTAAGTGCTGATTCCCCGATTAAGTGGTGGTGCTAAGTGCGAGATCCACC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACC
80239594 AATAACGGTT
Statistics
Matches: 148, Mismatches: 11, Indels: 6
0.90 0.07 0.04
Matches are distributed among these distances:
102 25 0.17
103 122 0.82
104 1 0.01
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (103 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCC
Found at i:80247062 original size:103 final size:104
Alignment explanation
Indices: 80246818--80247083 Score: 419
Period size: 103 Copynumber: 2.6 Consensus size: 104
80246808 GTTGTACATA
** *
80246818 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
* **
80246883 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
66 CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
*
80246922 GAGGGGTTGCTAAGTGCTGATTCCCC-AGTTCATTGGTGGTGCTAAGTGCGATATCCACCGTATC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGA-TTCATTGGTGGTGCTAAGTGCGATATCCACCGTATC
80246986 TCTGAAAT-AAAAAGGGGGTTGCTATGTGCTGATTCCCCC
65 TCTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
* * *
80247025 AAGGGGTTGCTAAGTGCTGATTCCCCGATTAAGTGGTGGTGCTAAGTGCGAGATCCACC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACC
80247084 AATAACGGTT
Statistics
Matches: 149, Mismatches: 11, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
103 83 0.56
104 66 0.44
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.30
Consensus pattern (104 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
Found at i:80252321 original size:24 final size:24
Alignment explanation
Indices: 80252285--80252385 Score: 148
Period size: 24 Copynumber: 4.2 Consensus size: 24
80252275 AAGTCTGTCA
*
80252285 GGAGAGGATTTAGGAGTTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
* * *
80252309 GGATAGGATTTAGGAGTTGTTAAG
1 GGAGAGGATTTAGGAGCTGATAAG
80252333 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
* *
80252357 GGAGAGGATTTAAGAGCTGATTAG
1 GGAGAGGATTTAGGAGCTGATAAG
80252381 GGAGA
1 GGAGA
80252386 ACAGTGTTGG
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 70 1.00
ACGTcount: A:0.33, C:0.02, G:0.41, T:0.25
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGATAAG
Found at i:80253833 original size:27 final size:27
Alignment explanation
Indices: 80253795--80253890 Score: 129
Period size: 27 Copynumber: 3.6 Consensus size: 27
80253785 AAGCGTCCTG
* *
80253795 GTGGCTATGCCACATTTATCTGATCTA
1 GTGGCTCTGCCACATTTATCTGTTCTA
* *
80253822 GTGGCTCTGCCACATATATCTGTTCTG
1 GTGGCTCTGCCACATTTATCTGTTCTA
*
80253849 GTGGCTCTGCCACAATTATCTGTTCTA
1 GTGGCTCTGCCACATTTATCTGTTCTA
* *
80253876 GTGACTCTGTCACAT
1 GTGGCTCTGCCACAT
80253891 CATCTATTCT
Statistics
Matches: 59, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 59 1.00
ACGTcount: A:0.19, C:0.25, G:0.20, T:0.36
Consensus pattern (27 bp):
GTGGCTCTGCCACATTTATCTGTTCTA
Found at i:80259230 original size:136 final size:136
Alignment explanation
Indices: 80258981--80259254 Score: 476
Period size: 136 Copynumber: 2.0 Consensus size: 136
80258971 AAAGTATTGT
* *
80258981 GGCATAGACATGGAGTAGAAGATGCTACATGGGAACCGAAGGAAGCCATGAGGAAACAGTACTCA
1 GGCATAGACACGGAGTAGAAGAGGCTACATGGGAACCGAAGGAAGCCATGAGGAAACAGTACTCA
* * *
80259046 AATCTCTTTACTGGTAAGATTTTCGGGGACGAAAATCCCTAAACGGGGGAGAGTTGTGACAGCTT
66 AATCTCTTTACTGGTAAAATTTTCGGGGACAAAAATCCCTAAACGGGGGAGAGTTGTGACAGCCT
*
80259111 GATTTA
131 AATTTA
*
80259117 GGCATATACACGGAGTAGAAGAGGCTACATGGGAACCGAAGGAAGCCATGAGGAAACAGTACTCA
1 GGCATAGACACGGAGTAGAAGAGGCTACATGGGAACCGAAGGAAGCCATGAGGAAACAGTACTCA
*
80259182 AATCTCTTTACTGGTAAAATTTTCGGGGACAAAAATCCCTAAAGGGGGGAGAGTTGTGACAGCCT
66 AATCTCTTTACTGGTAAAATTTTCGGGGACAAAAATCCCTAAACGGGGGAGAGTTGTGACAGCCT
80259247 AATTTA
131 AATTTA
80259253 GG
1 GG
80259255 GCCTAAATAG
Statistics
Matches: 130, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
136 130 1.00
ACGTcount: A:0.34, C:0.16, G:0.28, T:0.21
Consensus pattern (136 bp):
GGCATAGACACGGAGTAGAAGAGGCTACATGGGAACCGAAGGAAGCCATGAGGAAACAGTACTCA
AATCTCTTTACTGGTAAAATTTTCGGGGACAAAAATCCCTAAACGGGGGAGAGTTGTGACAGCCT
AATTTA
Found at i:80260633 original size:50 final size:49
Alignment explanation
Indices: 80260455--80260699 Score: 258
Period size: 49 Copynumber: 4.9 Consensus size: 49
80260445 TCTATTGTGA
* * * * * *
80260455 GGTCACGTATGTAGTACTAAGTGAAGGCTGCTACATGTACCGGATTATT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
80260504 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCA-ATAACTT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCAGATAA-TT
* * * **
80260554 CGATCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* *
80260604 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
80260654 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
80260700 GCTTTGGTTG
Statistics
Matches: 161, Mismatches: 31, Indels: 8
0.81 0.16 0.04
Matches are distributed among these distances:
49 74 0.46
50 52 0.32
51 35 0.22
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (49 bp):
GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:80264230 original size:28 final size:28
Alignment explanation
Indices: 80264198--80264325 Score: 175
Period size: 29 Copynumber: 4.5 Consensus size: 28
80264188 ATAGTAAGTC
*
80264198 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
80264226 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGC-TATATAATCAAACT
80264255 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* ** * *
80264283 TGCACACTTAGTGCTATGCAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
80264312 CGCACACTTAGTGC
1 CGCACACTTAGTGC
80264326 CAATCTCATG
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 44 0.49
29 45 0.51
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:80264288 original size:57 final size:57
Alignment explanation
Indices: 80264197--80264325 Score: 188
Period size: 57 Copynumber: 2.3 Consensus size: 57
80264187 TATAGTAAGT
*
80264197 CCGCACACTTAGTGTTATATAATCAAACTCGCACACTTAGTGCT-TACATAATCAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACA-AATCAAAC
* * * * *
80264254 TCGCACACTTAGTGCTATATAATCAAACTTGCACACTTAGTGCTATGCAATTTAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
80264311 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
80264326 CAATCTCATG
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (57 bp):
CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
Found at i:80271976 original size:28 final size:29
Alignment explanation
Indices: 80271936--80272010 Score: 107
Period size: 28 Copynumber: 2.6 Consensus size: 29
80271926 CACCCATACC
*
80271936 AACTTGCACACTTAGTGCTATATAA-TCA
1 AACTTGCACACTTAGTGCTATACAATTCA
* *
80271964 AACTTGCACACTTAGTGCTATGCAATTTA
1 AACTTGCACACTTAGTGCTATACAATTCA
*
80271993 AACTCGCACACTTAGTGC
1 AACTTGCACACTTAGTGC
80272011 CAATCTCATG
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
28 23 0.55
29 19 0.45
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.31
Consensus pattern (29 bp):
AACTTGCACACTTAGTGCTATACAATTCA
Found at i:80274152 original size:41 final size:41
Alignment explanation
Indices: 80274107--80274275 Score: 130
Period size: 41 Copynumber: 4.1 Consensus size: 41
80274097 GCACAAACAT
* *
80274107 CCTTCGGAA-TCAAGCCCGATTCTTAGCACTGGCTCAAAAGC
1 CCTTCGGAACT-AAGCCCGATTATGAGCACTGGCTCAAAAGC
* * * * *
80274148 CCTTC-GAGACCAAGCTCGGATTA-GACCACTGGCTCGAAGGC
1 CCTTCGGA-ACTAAGC-CCGATTATGAGCACTGGCTCAAAAGC
* * * *
80274189 CCTTCGGAACTATGTCCGGTTATGA-CACTGGCTCTAAAGC
1 CCTTCGGAACTAAGCCCGATTATGAGCACTGGCTCAAAAGC
* ** * * *
80274229 CCTTCGAAACTAAGTTCGGTTATTAGCCCTGGCTCAAAAGC
1 CCTTCGGAACTAAGCCCGATTATGAGCACTGGCTCAAAAGC
80274270 CCTTCG
1 CCTTCG
80274276 AGACCAAGCT
Statistics
Matches: 102, Mismatches: 20, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
40 41 0.40
41 54 0.53
42 7 0.07
ACGTcount: A:0.24, C:0.30, G:0.22, T:0.24
Consensus pattern (41 bp):
CCTTCGGAACTAAGCCCGATTATGAGCACTGGCTCAAAAGC
Found at i:80274276 original size:41 final size:41
Alignment explanation
Indices: 80274129--80274276 Score: 158
Period size: 41 Copynumber: 3.6 Consensus size: 41
80274119 AGCCCGATTC
* * *
80274129 TTAGCACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGG--A
1 TTAGCACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTA
* * * * *
80274168 TTAGACCACTGGCTCGAAGGCCCTTCGGAACTATGTCCGGTTA
1 TTAG--CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTA
* *
80274211 TGA-CACTGGCTCTAAAGCCCTTCGAAACTAAGTTCGGTTA
1 TTAGCACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTA
*
80274251 TTAGCCCTGGCTCAAAAGCCCTTCGA
1 TTAGCACTGGCTCAAAAGCCCTTCGA
80274277 GACCAAGCTC
Statistics
Matches: 87, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 4 0.05
40 34 0.39
41 46 0.53
43 3 0.03
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (41 bp):
TTAGCACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTA
Found at i:80296779 original size:29 final size:29
Alignment explanation
Indices: 80296732--80296850 Score: 93
Period size: 29 Copynumber: 4.2 Consensus size: 29
80296722 GTGAGCATGA
* *
80296732 ATAT-AATATGATTTGGGCCTAATGGGCC
1 ATATGAATATGAATCGGGCCTAATGGGCC
* * *
80296760 ATATGAATGTGAATCGGGCCTAGTGGGCT
1 ATATGAATATGAATCGGGCCTAATGGGCC
* *
80296789 ATAAGAATATGAA-CTGGACC-AGATGGGCC
1 ATATGAATATGAATC-GGGCCTA-ATGGGCC
* * * *
80296818 ATTTGAATAAG-ATTGGGCCTAGTGGGCC
1 ATATGAATATGAATCGGGCCTAATGGGCC
80296846 ATATG
1 ATATG
80296851 CATGTAAGTA
Statistics
Matches: 69, Mismatches: 17, Indels: 10
0.72 0.18 0.10
Matches are distributed among these distances:
28 21 0.30
29 48 0.70
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.27
Consensus pattern (29 bp):
ATATGAATATGAATCGGGCCTAATGGGCC
Found at i:80298643 original size:20 final size:20
Alignment explanation
Indices: 80298607--80298645 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
80298597 CGTGAAACAG
*
80298607 GAGAGAAAGAAGGAGAAAAA
1 GAGAGAAAGAAGAAGAAAAA
80298627 GAGA-AAAGAAAGAAGAAAA
1 GAGAGAAAG-AAGAAGAAAA
80298646 TGGAAAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (20 bp):
GAGAGAAAGAAGAAGAAAAA
Found at i:80299089 original size:51 final size:51
Alignment explanation
Indices: 80298968--80299081 Score: 158
Period size: 51 Copynumber: 2.2 Consensus size: 51
80298958 AGAACTAAGT
* * *
80298968 TATCCGGATGAAATATGAAGCTCTTGTTGAAACTAGAGCAATAAAGTAATA
1 TATCCGGATGAAATATGAAGCTCTTGTTGAAACCAGAACAACAAAGTAATA
* * *
80299019 TATCCGGATGAAATATGAAGTTCTTGTTGAAGCCAGAATAACAAAGTAATA
1 TATCCGGATGAAATATGAAGCTCTTGTTGAAACCAGAACAACAAAGTAATA
80299070 -ATTCCGGATGAA
1 TA-TCCGGATGAA
80299082 GCATGAAGAA
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
50 1 0.02
51 55 0.98
ACGTcount: A:0.40, C:0.12, G:0.20, T:0.27
Consensus pattern (51 bp):
TATCCGGATGAAATATGAAGCTCTTGTTGAAACCAGAACAACAAAGTAATA
Found at i:80299248 original size:52 final size:52
Alignment explanation
Indices: 80299125--80299230 Score: 194
Period size: 52 Copynumber: 2.0 Consensus size: 52
80299115 AACATTAGGC
* *
80299125 ATAAATTGAGTAGAAATTTAATTAATTATTTAAATTAATGCTTTAATTAATA
1 ATAAATTGAGTAGAAATTTTATTAATTATTTAAATTAATGCTGTAATTAATA
80299177 ATAAATTGAGTAGAAATTTTATTAATTATTTAAATTAATGCTGTAATTAATA
1 ATAAATTGAGTAGAAATTTTATTAATTATTTAAATTAATGCTGTAATTAATA
80299229 AT
1 AT
80299231 GTAAATTGTT
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.45, C:0.02, G:0.08, T:0.44
Consensus pattern (52 bp):
ATAAATTGAGTAGAAATTTTATTAATTATTTAAATTAATGCTGTAATTAATA
Found at i:80299470 original size:15 final size:15
Alignment explanation
Indices: 80299450--80299487 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
80299440 CGATGAATTT
80299450 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
80299465 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
80299480 ATTGAATT
1 ATTGAATT
80299488 ATAAAATATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.34, C:0.00, G:0.13, T:0.53
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:80299913 original size:21 final size:22
Alignment explanation
Indices: 80299878--80299924 Score: 78
Period size: 21 Copynumber: 2.1 Consensus size: 22
80299868 AGGCACTTTA
80299878 TGTGTCGTATTTCAGGCACCTCG
1 TGTGTCGTA-TTCAGGCACCTCG
80299901 TGTGTCGTA-TCAGGCACCTCG
1 TGTGTCGTATTCAGGCACCTCG
80299922 TGT
1 TGT
80299925 ATCATTTTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 15 0.62
23 9 0.38
ACGTcount: A:0.13, C:0.26, G:0.28, T:0.34
Consensus pattern (22 bp):
TGTGTCGTATTCAGGCACCTCG
Found at i:80299936 original size:21 final size:21
Alignment explanation
Indices: 80299886--80299938 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
80299876 TATGTGTCGT
*
80299886 ATTTCAGGCACCTCGTGTGTC
1 ATTTCAGGCACCTCGTGTATC
* *
80299907 GTATCAGGCACCTCGTGTATC
1 ATTTCAGGCACCTCGTGTATC
*
80299928 ATTTTAGGCAC
1 ATTTCAGGCAC
80299939 TTTATGTGTC
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.19, C:0.26, G:0.23, T:0.32
Consensus pattern (21 bp):
ATTTCAGGCACCTCGTGTATC
Found at i:80303036 original size:13 final size:13
Alignment explanation
Indices: 80303018--80303042 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
80303008 TAATGGTATA
80303018 TTGAATCCATGAT
1 TTGAATCCATGAT
80303031 TTGAATCCATGA
1 TTGAATCCATGA
80303043 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:80304737 original size:49 final size:48
Alignment explanation
Indices: 80304652--80304769 Score: 193
Period size: 49 Copynumber: 2.4 Consensus size: 48
80304642 TTATTCATTG
*
80304652 GAATGTGAAAG-TGTATATATGTGATAAGGCCGAATGGCCAATGTGAT
1 GAATGTGAAAGTTATATATATGTGATAAGGCCGAATGGCCAATGTGAT
*
80304699 GAATGTGAAAGTATATATATATGTGATAAGGCCTAATGGCCAATGTGAT
1 GAATGTGAAAGT-TATATATATGTGATAAGGCCGAATGGCCAATGTGAT
80304748 GAATGTGAAAGTGTATATATAT
1 GAATGTGAAAGT-TATATATAT
80304770 TGGCCGATGT
Statistics
Matches: 66, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
47 11 0.17
49 55 0.83
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (48 bp):
GAATGTGAAAGTTATATATATGTGATAAGGCCGAATGGCCAATGTGAT
Found at i:80304780 original size:35 final size:35
Alignment explanation
Indices: 80304735--80304802 Score: 127
Period size: 35 Copynumber: 1.9 Consensus size: 35
80304725 TAAGGCCTAA
80304735 TGGCCAATGTGATGAATGTGAAAGTGTATATATAT
1 TGGCCAATGTGATGAATGTGAAAGTGTATATATAT
*
80304770 TGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 TGGCCAATGTGATGAATGTGAAAGTGTATATAT
80304803 GTGATAAGGC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.32, C:0.06, G:0.28, T:0.34
Consensus pattern (35 bp):
TGGCCAATGTGATGAATGTGAAAGTGTATATATAT
Found at i:80304825 original size:47 final size:47
Alignment explanation
Indices: 80304770--80305475 Score: 1144
Period size: 47 Copynumber: 14.9 Consensus size: 47
80304760 GTATATATAT
80304770 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
1 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
*
80304817 TCGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
1 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
* *
80304864 TAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAA
1 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
*
80304911 TGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
1 TGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAA
*
80304960 TGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
1 TGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAA
*
80305009 TAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
1 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
* *
80305056 TAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAA
1 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
*
80305103 TGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
1 TGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAA
* *
80305152 TGGCCAATGTGATGAATGTGAAAGTCTATATATATGTGATAAGGCCTAA
1 TGGCCGATGTGATGAATGTGAAAG--TGTATATATGTGATAAGGCCTAA
80305201 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
1 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
*
80305248 TAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
1 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
*
80305295 TAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
1 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
80305342 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
1 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
* * * *
80305389 TGGCCGATGTGATGAATGTG-AAGTGTATATATGTGACAGGGCCGAG
1 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
* * * *
80305435 TGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
80305476 TCTCGAAGGG
Statistics
Matches: 625, Mismatches: 27, Indels: 14
0.94 0.04 0.02
Matches are distributed among these distances:
46 39 0.06
47 404 0.65
49 181 0.29
51 1 0.00
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
Found at i:80305101 original size:192 final size:190
Alignment explanation
Indices: 80304770--80305475 Score: 1202
Period size: 192 Copynumber: 3.7 Consensus size: 190
80304760 GTATATATAT
* *
80304770 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATCGCCGATGTGATGAATG
1 TGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
80304835 TGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTG
66 TGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTG
80304900 ATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
131 ATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
*
80304960 TGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAA
1 TGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
80305025 TGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATG
64 TGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATG
80305090 TGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
129 TGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
*
80305152 TGGCCAATGTGATGAATGTGAAAGTCTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGGCCAATGTGATGAATGTGAAAG--TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
80305217 TGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATG
64 TGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATG
* * *
80305282 TGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAA
129 TGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
*
80305342 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 TGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
* * * * * * * * *
80305407 TG-AAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTG
66 TGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTG
80305471 ATAAG
131 ATAAG
80305476 TCTCGAAGGG
Statistics
Matches: 494, Mismatches: 18, Indels: 11
0.94 0.03 0.02
Matches are distributed among these distances:
187 58 0.12
188 42 0.09
190 69 0.14
192 324 0.66
194 1 0.00
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (190 bp):
TGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
TGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTG
ATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
Found at i:80305233 original size:239 final size:236
Alignment explanation
Indices: 80304772--80305475 Score: 1205
Period size: 239 Copynumber: 3.0 Consensus size: 236
80304762 ATATATATTG
*
80304772 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATCGCCGATGTGATGAATGTG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
*
80304837 AAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
66 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
*
80304902 AAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAA
131 AAGGCCTAATGGCCAATGTGATGAATGTGAAAGT-TATATATATGTGATAAGGCCTAATGGCCAA
80304967 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATA
195 TGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATA
80305011 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
* *
80305076 AAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTG
66 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTG
80305141 ATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTCTATATATATGTGATAAGGCCTAATGGCC
129 ATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGT-TATATATATGTGATAAGGCCTAATGGCC
*
80305206 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
193 AATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
80305250 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
80305315 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
66 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
* * * * * * *
80305380 AAGGCCTAATGGCCGATGTGATGAATGTG-AAG-TGTATATATGTGACAGGGCCGAGTGGCCAAC
131 AAGGCCTAATGGCCAATGTGATGAATGTGAAAGTTATATATATGTGATAAGGCCTAATGGCCAAT
* *
80305443 GTGATGGATGTGAAAGTGTATAAATGTGATAAG
196 GTGATGAATGTGAAAGTGTATATATGTGATAAG
80305476 TCTCGAAGGG
Statistics
Matches: 444, Mismatches: 19, Indels: 9
0.94 0.04 0.02
Matches are distributed among these distances:
234 55 0.12
236 3 0.01
237 40 0.09
239 253 0.57
241 93 0.21
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (236 bp):
GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
AAGGCCTAATGGCCAATGTGATGAATGTGAAAGTTATATATATGTGATAAGGCCTAATGGCCAAT
GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
Found at i:80312982 original size:50 final size:50
Alignment explanation
Indices: 80312907--80313006 Score: 200
Period size: 50 Copynumber: 2.0 Consensus size: 50
80312897 ACACATGACC
80312907 GTGTCACATGGCCGTGTGTCACACATGGCTGAGACACACGCCCATGTCTT
1 GTGTCACATGGCCGTGTGTCACACATGGCTGAGACACACGCCCATGTCTT
80312957 GTGTCACATGGCCGTGTGTCACACATGGCTGAGACACACGCCCATGTCTT
1 GTGTCACATGGCCGTGTGTCACACATGGCTGAGACACACGCCCATGTCTT
80313007 AGGCTATGTG
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.20, C:0.30, G:0.26, T:0.24
Consensus pattern (50 bp):
GTGTCACATGGCCGTGTGTCACACATGGCTGAGACACACGCCCATGTCTT
Found at i:80313834 original size:41 final size:41
Alignment explanation
Indices: 80313789--80313874 Score: 136
Period size: 41 Copynumber: 2.1 Consensus size: 41
80313779 GGTGCTATTT
80313789 AGGGGTACCGAAGTACAAATAGGAGCACGAATATGCAATTC
1 AGGGGTACCGAAGTACAAATAGGAGCACGAATATGCAATTC
* * * *
80313830 AGGGGTATCGAAGTACAAATAGGGGCACGTATGTGCAATTC
1 AGGGGTACCGAAGTACAAATAGGAGCACGAATATGCAATTC
80313871 AGGG
1 AGGG
80313875 AATAATTAAG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.35, C:0.15, G:0.31, T:0.19
Consensus pattern (41 bp):
AGGGGTACCGAAGTACAAATAGGAGCACGAATATGCAATTC
Found at i:80318411 original size:16 final size:16
Alignment explanation
Indices: 80318390--80318425 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
80318380 TACAAGTGAC
80318390 ATGTCACTAAGCTTTT
1 ATGTCACTAAGCTTTT
*
80318406 ATGTCACTAGGCTTTT
1 ATGTCACTAAGCTTTT
80318422 ATGT
1 ATGT
80318426 TATGTCACTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.22, C:0.17, G:0.17, T:0.44
Consensus pattern (16 bp):
ATGTCACTAAGCTTTT
Found at i:80331033 original size:79 final size:79
Alignment explanation
Indices: 80330898--80331109 Score: 236
Period size: 79 Copynumber: 2.7 Consensus size: 79
80330888 CCTTCGAAAT
*
80330898 TTAACCGGATATAGCTACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACA
1 TTAACCGGATATAGCTACTCGCTCAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACA
80330963 AATGCCTTCGGGAC
66 AATGCCTTCGGGAC
* * *
80330977 TTAACCCGGATTTAG-TAACTCGCTCCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGC
1 TTAA-CCGGATATAGCT-ACTCGCTCAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGC
80331039 ACAAATGCCTTC-GGATC
63 ACAAATGCCTTCGGGA-C
* * * * * *
80331056 TTAGTCCGGATATAG-TCATTTAGCACAAAAGCCTTCGGGACTTAGCCCGGATAT
1 TTA-ACCGGATATAGCT-A-CTCGCTCAAATGCCTTCGGGACATAGCCCGGATAT
80331110 CATTCGAATA
Statistics
Matches: 113, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
78 4 0.04
79 52 0.46
80 44 0.39
81 12 0.11
82 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (79 bp):
TTAACCGGATATAGCTACTCGCTCAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACA
AATGCCTTCGGGAC
Found at i:80331035 original size:39 final size:40
Alignment explanation
Indices: 80330914--80331107 Score: 232
Period size: 40 Copynumber: 4.8 Consensus size: 40
80330904 GGATATAGCT
* *
80330914 ACTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTA
*
80330954 ACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * *
80330994 ACTCGCTCCAATGCCTTCGGG-CTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
80331033 ACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATAGTCA
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-A
** * *
80331074 TTTAGCACAAAAGCCTTCGGGACTTAGCCCGGAT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
80331108 ATCATTCGAA
Statistics
Matches: 132, Mismatches: 17, Indels: 9
0.84 0.11 0.06
Matches are distributed among these distances:
38 2 0.02
39 32 0.24
40 67 0.51
41 28 0.21
42 3 0.02
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:80339114 original size:27 final size:27
Alignment explanation
Indices: 80339076--80339131 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
80339066 TCACAACTAA
80339076 TGATGCCAAGTTAGTGTTGAAGTTTTT
1 TGATGCCAAGTTAGTGTTGAAGTTTTT
80339103 TGATGCCAAGTTAGTGTTGAAGTTTTT
1 TGATGCCAAGTTAGTGTTGAAGTTTTT
80339130 TG
1 TG
80339132 TACAAGAACA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.21, C:0.07, G:0.27, T:0.45
Consensus pattern (27 bp):
TGATGCCAAGTTAGTGTTGAAGTTTTT
Found at i:80340245 original size:40 final size:40
Alignment explanation
Indices: 80340105--80340288 Score: 158
Period size: 40 Copynumber: 4.5 Consensus size: 40
80340095 TCGATATCTT
* * **
80340105 ACACACTAAGTGCCAATACATAGTCGAAGCTATT-ATAATCTC
1 ACACACTAAGTGCC-ATATATAGCCGAAGCTATTCCGAA--TC
* * * * **
80340147 GCACACTAAGTGCCTTACATAGCCGAAGCTATCTCGGTCTC
1 ACACACTAAGTGCCATATATAGCCGAAGCTAT-TCCGAATC
* * *
80340188 GCACACTAAGTGTCATATATAGCTGAAGCTATTCCGAATC
1 ACACACTAAGTGCCATATATAGCCGAAGCTATTCCGAATC
*
80340228 ACACACTCAGTGCCATATATAGCCGAAGCTA-TCTCGAATC
1 ACACACTAAGTGCCATATATAGCCGAAGCTATTC-CGAATC
*
80340268 GA-ACCCTAAGTGCCATATATA
1 -ACACACTAAGTGCCATATATA
80340289 TATTCGAATC
Statistics
Matches: 118, Mismatches: 20, Indels: 10
0.80 0.14 0.07
Matches are distributed among these distances:
39 2 0.02
40 55 0.47
41 47 0.40
42 14 0.12
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.25
Consensus pattern (40 bp):
ACACACTAAGTGCCATATATAGCCGAAGCTATTCCGAATC
Found at i:80346140 original size:23 final size:23
Alignment explanation
Indices: 80346110--80346156 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
80346100 TCTCTCTAAG
80346110 TTCATCTGAACTTATAAATTTAC
1 TTCATCTGAACTTATAAATTTAC
80346133 TTCATCTGAACTTATAAATTTAC
1 TTCATCTGAACTTATAAATTTAC
80346156 T
1 T
80346157 GCCTTGTATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.34, C:0.17, G:0.04, T:0.45
Consensus pattern (23 bp):
TTCATCTGAACTTATAAATTTAC
Found at i:80349110 original size:17 final size:18
Alignment explanation
Indices: 80349088--80349132 Score: 53
Period size: 17 Copynumber: 2.7 Consensus size: 18
80349078 GTGAGATGTA
80349088 TGAAAAAGATCA-AAAAG
1 TGAAAAAGATCACAAAAG
80349105 TGAAAAAG--CACAAAAG
1 TGAAAAAGATCACAAAAG
80349121 TAGAAAAA-ATCA
1 T-GAAAAAGATCA
80349133 GTCATTAGTG
Statistics
Matches: 24, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
15 2 0.08
16 6 0.25
17 14 0.58
18 2 0.08
ACGTcount: A:0.64, C:0.09, G:0.16, T:0.11
Consensus pattern (18 bp):
TGAAAAAGATCACAAAAG
Found at i:80353184 original size:28 final size:27
Alignment explanation
Indices: 80353139--80353203 Score: 76
Period size: 28 Copynumber: 2.4 Consensus size: 27
80353129 TTTGCACTAT
* * * *
80353139 ACTGAAACTGTATTGGGCTTAGGCCCAC
1 ACTGATACTGAATAGGGCTCAGG-CCAC
*
80353167 ACTGATACTGAATAGGGCTCAGGCCAG
1 ACTGATACTGAATAGGGCTCAGGCCAC
80353194 ACTGATACTG
1 ACTGATACTG
80353204 CGTGCACTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
27 13 0.41
28 19 0.59
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (27 bp):
ACTGATACTGAATAGGGCTCAGGCCAC
Found at i:80380084 original size:44 final size:43
Alignment explanation
Indices: 80380030--80380119 Score: 162
Period size: 44 Copynumber: 2.1 Consensus size: 43
80380020 GAAGTGGTGG
80380030 TCTCTAATTCCCTTAGCCTCTCCATGAGAAATTTGGGTGGTTCC
1 TCTCTAATTCCCTTAGCCTCTCCATGAGAAA-TTGGGTGGTTCC
*
80380074 TCTCTGATTCCCTTAGCCTCTCCATGAGAAATTGGGTGGTTCC
1 TCTCTAATTCCCTTAGCCTCTCCATGAGAAATTGGGTGGTTCC
80380117 TCT
1 TCT
80380120 AACCTGCATT
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
43 15 0.33
44 30 0.67
ACGTcount: A:0.17, C:0.28, G:0.19, T:0.37
Consensus pattern (43 bp):
TCTCTAATTCCCTTAGCCTCTCCATGAGAAATTGGGTGGTTCC
Found at i:80382410 original size:13 final size:13
Alignment explanation
Indices: 80382392--80382418 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
80382382 GCTTAGCAGG
80382392 GACACGCCCGTGT
1 GACACGCCCGTGT
80382405 GACACGCCCGTGT
1 GACACGCCCGTGT
80382418 G
1 G
80382419 CGATTGCTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:80387343 original size:255 final size:255
Alignment explanation
Indices: 80386892--80387402 Score: 995
Period size: 255 Copynumber: 2.0 Consensus size: 255
80386882 TCTAGACGAA
*
80386892 AGACAATTGAGTTGAAATGTCAGAATAATGAAACTCTCCAAATCGAATCAAATGATTTTGAAGGT
1 AGACAATTGAGTTGAAATGTCAGAATAATGAAACTCTCCAAATCGAATCAAATGATTTTGAAGGG
80386957 TTTACCAATTGCAATCTCGTCGATGTTAGCTCTGAGATATGTGAAAAAGAGATGCAATGCATATC
66 TTTACCAATTGCAATCTCGTCGATGTTAGCTCTGAGATATGTGAAAAAGAGATGCAATGCATATC
80387022 TTGCATATGTACTTGATACAAAAGTGCCAGAAACAAAGATTGAATTAGTACCAGTTTTTTGTGAG
131 TTGCATATGTACTTGATACAAAAGTGCCAGAAACAAAGATTGAATTAGTACCAGTTTTTTGTGAG
80387087 TATTCAGATGTGTTTTCAGAAGAGTTATCGGGTTTGCCACCGATCAGAGAGGTTGAATTT
196 TATTCAGATGTGTTTTCAGAAGAGTTATCGGGTTTGCCACCGATCAGAGAGGTTGAATTT
*
80387147 AGACAATTTAGTTGAAATGTCAGAATAATGAAACTCTCCAAATCGAATCAAATGATTTTGAAGGG
1 AGACAATTGAGTTGAAATGTCAGAATAATGAAACTCTCCAAATCGAATCAAATGATTTTGAAGGG
*
80387212 TTTACCAGTTGCAATCTCGTCGATGTTAGCTCTGAGATATGTGAAAAAGAGATGCAATGCATATC
66 TTTACCAATTGCAATCTCGTCGATGTTAGCTCTGAGATATGTGAAAAAGAGATGCAATGCATATC
80387277 TTGCATATGTACTTGATACAAAAGTGCCAGAAACAAAGATTGAATTAGTACCAGTTTTTTGTGAG
131 TTGCATATGTACTTGATACAAAAGTGCCAGAAACAAAGATTGAATTAGTACCAGTTTTTTGTGAG
80387342 TATTCAGATGTGTTTTCAGAAGAGTTATCGGGTTTGCCACCGATCAGAGAGGTTGAATTT
196 TATTCAGATGTGTTTTCAGAAGAGTTATCGGGTTTGCCACCGATCAGAGAGGTTGAATTT
80387402 A
1 A
80387403 CTACTAATAT
Statistics
Matches: 253, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
255 253 1.00
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.31
Consensus pattern (255 bp):
AGACAATTGAGTTGAAATGTCAGAATAATGAAACTCTCCAAATCGAATCAAATGATTTTGAAGGG
TTTACCAATTGCAATCTCGTCGATGTTAGCTCTGAGATATGTGAAAAAGAGATGCAATGCATATC
TTGCATATGTACTTGATACAAAAGTGCCAGAAACAAAGATTGAATTAGTACCAGTTTTTTGTGAG
TATTCAGATGTGTTTTCAGAAGAGTTATCGGGTTTGCCACCGATCAGAGAGGTTGAATTT
Found at i:80395453 original size:28 final size:28
Alignment explanation
Indices: 80395421--80395480 Score: 75
Period size: 30 Copynumber: 2.1 Consensus size: 28
80395411 CACGGTCAGA
*
80395421 GACACGAACTTATGTCTCAGTCGTGTGT
1 GACACGAACGTATGTCTCAGTCGTGTGT
**
80395449 GACACACGGGCGTATGTCTCAGTCGTGTGT
1 G--ACACGAACGTATGTCTCAGTCGTGTGT
80395479 GA
1 GA
80395481 GACACAGTCA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
28 2 0.07
30 25 0.93
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (28 bp):
GACACGAACGTATGTCTCAGTCGTGTGT
Found at i:80395684 original size:66 final size:64
Alignment explanation
Indices: 80395558--80395699 Score: 171
Period size: 66 Copynumber: 2.2 Consensus size: 64
80395548 CAGGGTCTCA
* *
80395558 CACACGGGCGTGTGACTGGCCGTGTGGTACAAGTCAGTATACCCCCTAATTGGCAGACGGCCTAG
1 CACACGGGCGTGTGACTGGCCGTGTGGCACAAGTCAGTATACCCACTAATTGGCA-ACGGCCTAG
* * *
80395623 CACACAGGCGTGTGACTTGGCCGTGTTGCATAAGTCAGTATACCCTAC-AGATTTGGC-ACGGCC
1 CACACGGGCGTGTGAC-TGGCCGTGTGGCACAAGTCAGTATACCC-ACTA-A-TTGGCAACGGCC
80395686 TAG
62 TAG
*
80395689 TACACGGGCGT
1 CACACGGGCGT
80395700 ATATGGCCAC
Statistics
Matches: 66, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
65 15 0.23
66 44 0.67
67 2 0.03
68 5 0.08
ACGTcount: A:0.22, C:0.27, G:0.30, T:0.22
Consensus pattern (64 bp):
CACACGGGCGTGTGACTGGCCGTGTGGCACAAGTCAGTATACCCACTAATTGGCAACGGCCTAG
Found at i:80401067 original size:13 final size:13
Alignment explanation
Indices: 80401049--80401073 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
80401039 AGACACAGCC
80401049 GTGCGATACGGCA
1 GTGCGATACGGCA
80401062 GTGCGATACGGC
1 GTGCGATACGGC
80401074 CGTGTTGAAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.24, G:0.40, T:0.16
Consensus pattern (13 bp):
GTGCGATACGGCA
Done.