Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 233 of 295
Found at i:80690141 original size:15 final size:16
Alignment explanation
Indices: 80690115--80690145 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
80690105 ATATTTTTAA
80690115 TATTTTTAAAATATAT
1 TATTTTTAAAATATAT
80690131 TATTTTT-AAATATAT
1 TATTTTTAAAATATAT
80690146 GACCTTTCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (16 bp):
TATTTTTAAAATATAT
Found at i:80690191 original size:29 final size:28
Alignment explanation
Indices: 80690041--80690191 Score: 71
Period size: 29 Copynumber: 5.1 Consensus size: 28
80690031 CTTTCAAATT
* *
80690041 TATTATTAGTTTATAATATTTTAAATGTA
1 TATTATT-TTTTATAATATTTTAAATTTA
** *
80690070 TATTTAAAATTTTA-AATATTTTTAATTTA
1 TA-TT-ATTTTTTATAATATTTTAAATTTA
*
80690099 T-TTATAATATTTT-TAATATTTTTAAA-ATA
1 TATTAT--T-TTTTATAATA-TTTTAAATTTA
* *
80690128 TATTATTTTTAAATATATGACCTTTCAAA-TT-
1 TATTATTTTT-TATA-AT-A--TTTTAAATTTA
80690159 TATTATTTGTTTATAATATTTTAAATTTA
1 TATTATTT-TTTATAATATTTTAAATTTA
80690188 TATT
1 TATT
80690192 TTAAATATTT
Statistics
Matches: 91, Mismatches: 15, Indels: 32
0.66 0.11 0.23
Matches are distributed among these distances:
26 1 0.01
27 11 0.12
28 3 0.03
29 34 0.37
30 20 0.22
31 13 0.14
32 9 0.10
ACGTcount: A:0.38, C:0.02, G:0.03, T:0.58
Consensus pattern (28 bp):
TATTATTTTTTATAATATTTTAAATTTA
Found at i:80690221 original size:11 final size:11
Alignment explanation
Indices: 80690174--80690222 Score: 52
Period size: 13 Copynumber: 4.6 Consensus size: 11
80690164 TTTGTTTATA
80690174 ATATTTTAAATTT
1 ATATTTTAAA--T
80690187 ATATTTTAAAT
1 ATATTTTAAAT
80690198 AT-TTTT-AA-
1 ATATTTTAAAT
80690206 A-ATTTTAAAT
1 ATATTTTAAAT
80690216 ATATTTT
1 ATATTTT
80690223 TATAAATTAT
Statistics
Matches: 32, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
8 5 0.16
9 4 0.12
10 5 0.16
11 8 0.25
13 10 0.31
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (11 bp):
ATATTTTAAAT
Found at i:80690221 original size:20 final size:22
Alignment explanation
Indices: 80690196--80690235 Score: 66
Period size: 20 Copynumber: 1.9 Consensus size: 22
80690186 TATATTTTAA
80690196 ATATTTTTA-AAATT-TTAAAT
1 ATATTTTTATAAATTATTAAAT
80690216 ATATTTTTATAAATTATTAA
1 ATATTTTTATAAATTATTAA
80690236 TTATTAATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 9 0.50
21 5 0.28
22 4 0.22
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (22 bp):
ATATTTTTATAAATTATTAAAT
Found at i:80690240 original size:20 final size:18
Alignment explanation
Indices: 80690189--80690240 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 18
80690179 TTAAATTTAT
*
80690189 ATTTTAAATATTTTTAAA
1 ATTTTAATTATTTTTAAA
80690207 ATTTTAAATATATTTTTATAA
1 ATTTT-AAT-TATTTTTA-AA
80690228 ATTATTAATTATT
1 ATT-TTAATTATT
80690241 AATTAATTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
18 5 0.17
19 2 0.07
20 12 0.41
21 8 0.28
22 2 0.07
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (18 bp):
ATTTTAATTATTTTTAAA
Found at i:80693679 original size:30 final size:30
Alignment explanation
Indices: 80693615--80693714 Score: 137
Period size: 30 Copynumber: 3.3 Consensus size: 30
80693605 GTTGCTCTGG
* * *
80693615 GTGAAATGAACTCGAACCGCCTATGTTCGG
1 GTGATATGAACTCGAACCGCCTATGTCCGA
*
80693645 GTGATATGAACTCGAACCGCCTATGTCCAA
1 GTGATATGAACTCGAACCGCCTATGTCCGA
* * *
80693675 GTGATATGAACTTGAACTGCCAATGTCCGA
1 GTGATATGAACTCGAACCGCCTATGTCCGA
80693705 GTGATATGAA
1 GTGATATGAA
80693715 ATGCTCTGCG
Statistics
Matches: 62, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 62 1.00
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.25
Consensus pattern (30 bp):
GTGATATGAACTCGAACCGCCTATGTCCGA
Found at i:80695677 original size:42 final size:41
Alignment explanation
Indices: 80695616--80695726 Score: 132
Period size: 43 Copynumber: 2.6 Consensus size: 41
80695606 GCTGAAATTA
**
80695616 CGTGTAAGACCATATTTGGGATATGAAATCGATATGAGATTT
1 CGTGTAAGACCATA-TTGGGATATGAAATCGATATGAGATCC
** *
80695658 CGTGTAAGACCATAGTTGGGATATTGGCATCGATATGATATCC
1 CGTGTAAGACCATA-TTGGGATA-TGAAATCGATATGAGATCC
*
80695701 CATGTAAGACCATATCTGGGATATGA
1 CGTGTAAGACCATAT-TGGGATATGA
80695727 CATTGGTATG
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
42 25 0.42
43 34 0.58
ACGTcount: A:0.32, C:0.14, G:0.24, T:0.31
Consensus pattern (41 bp):
CGTGTAAGACCATATTGGGATATGAAATCGATATGAGATCC
Found at i:80695843 original size:20 final size:20
Alignment explanation
Indices: 80695815--80695852 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
80695805 CAATGTTAAA
80695815 GTTGGGAAAGACTATGGTAT
1 GTTGGGAAAGACTATGGTAT
* *
80695835 GTTGTGAAAGATTATGGT
1 GTTGGGAAAGACTATGGT
80695853 GAGATGCAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.29, C:0.03, G:0.34, T:0.34
Consensus pattern (20 bp):
GTTGGGAAAGACTATGGTAT
Found at i:80698859 original size:34 final size:34
Alignment explanation
Indices: 80698811--80698891 Score: 108
Period size: 34 Copynumber: 2.4 Consensus size: 34
80698801 GCATGACTGC
*
80698811 TACTAATACTGTGATAGGCTAAGGCCCTAATGCA
1 TACTGATACTGTGATAGGCTAAGGCCCTAATGCA
* * *
80698845 TACTGATACTGTGATGGGCTAAGTCCCTACTGCA
1 TACTGATACTGTGATAGGCTAAGGCCCTAATGCA
*
80698879 TATTTGATACTGT
1 TA-CTGATACTGT
80698892 ATTGAGATAG
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
34 32 0.78
35 9 0.22
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (34 bp):
TACTGATACTGTGATAGGCTAAGGCCCTAATGCA
Found at i:80701251 original size:21 final size:21
Alignment explanation
Indices: 80701225--80701265 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
80701215 ATTTTTAAAA
*
80701225 TTTTTTAATTTAAATTTTTAT
1 TTTTTTAATATAAATTTTTAT
*
80701246 TTTTTTAATATATATTTTTA
1 TTTTTTAATATAAATTTTTA
80701266 AATAAAGTCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (21 bp):
TTTTTTAATATAAATTTTTAT
Found at i:80701332 original size:21 final size:20
Alignment explanation
Indices: 80701276--80701321 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
80701266 AATAAAGTCA
***
80701276 TATTTTTTAACAAA-TAAAT
1 TATTTTTTAACAAATTTTTT
80701295 TATTTTTTAACAAATTTTTT
1 TATTTTTTAACAAATTTTTT
80701315 TATTTTT
1 TATTTTT
80701322 CTAATTAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 14 0.61
20 9 0.39
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (20 bp):
TATTTTTTAACAAATTTTTT
Found at i:80701426 original size:13 final size:12
Alignment explanation
Indices: 80701406--80701436 Score: 53
Period size: 13 Copynumber: 2.5 Consensus size: 12
80701396 GAATATTTTT
80701406 AAAAATAATTTA
1 AAAAATAATTTA
80701418 AAAATATAATTTA
1 AAAA-ATAATTTA
80701431 AAAAAT
1 AAAAAT
80701437 TATATGTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 6 0.33
13 12 0.67
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (12 bp):
AAAAATAATTTA
Found at i:80701580 original size:11 final size:12
Alignment explanation
Indices: 80701559--80701583 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
80701549 ATATATTTAA
80701559 AATTTCAAAAAT
1 AATTTCAAAAAT
80701571 AATTTCAAAAAT
1 AATTTCAAAAAT
80701583 A
1 A
80701584 TATATTTAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.08, G:0.00, T:0.32
Consensus pattern (12 bp):
AATTTCAAAAAT
Found at i:80701688 original size:23 final size:24
Alignment explanation
Indices: 80701643--80701694 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
80701633 TCAAGTTTTT
*
80701643 TAAAATCAATAATAAACAAATAAA
1 TAAAATAAATAATAAACAAATAAA
*
80701667 TAAAATAAATAAT-GACAAATAAA
1 TAAAATAAATAATAAACAAATAAA
80701690 -AAAAT
1 TAAAAT
80701695 TTAAAAAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
22 5 0.19
23 9 0.35
24 12 0.46
ACGTcount: A:0.71, C:0.06, G:0.02, T:0.21
Consensus pattern (24 bp):
TAAAATAAATAATAAACAAATAAA
Found at i:80701839 original size:45 final size:47
Alignment explanation
Indices: 80701757--80701848 Score: 143
Period size: 45 Copynumber: 2.0 Consensus size: 47
80701747 AATTCAAAGA
80701757 ATCTGACGTGAAAAGGAAAAAAAATAAAAAAAATTGGCCTTAAACTG
1 ATCTGACGTGAAAAGGAAAAAAAATAAAAAAAATTGGCCTTAAACTG
* * *
80701804 ATCTGACGTG-AAAGGGAAAAAAAT-TAAAAATTTGGCCTTAAACTG
1 ATCTGACGTGAAAAGGAAAAAAAATAAAAAAAATTGGCCTTAAACTG
80701849 TTTGAATAGG
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
45 19 0.45
46 13 0.31
47 10 0.24
ACGTcount: A:0.49, C:0.11, G:0.18, T:0.22
Consensus pattern (47 bp):
ATCTGACGTGAAAAGGAAAAAAAATAAAAAAAATTGGCCTTAAACTG
Found at i:80705540 original size:24 final size:24
Alignment explanation
Indices: 80705495--80705541 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
80705485 TTATAATATT
*
80705495 AATTATAAAATTAATTTTATATAA
1 AATTATAAAATTAATTTAATATAA
80705519 AATTATAAAA-TAATTGTAATATA
1 AATTATAAAATTAATT-TAATATA
80705542 TTTTAATTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 5 0.24
24 16 0.76
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (24 bp):
AATTATAAAATTAATTTAATATAA
Found at i:80713056 original size:26 final size:26
Alignment explanation
Indices: 80713027--80713083 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
80713017 TCTTATCCTT
*
80713027 ATTTTATCCCTGA-CAAAATTTTGACA
1 ATTTTA-CCCTGAGCAAAATTTTAACA
* *
80713053 ATTTTACCCTTAGTAAAATTTTAACA
1 ATTTTACCCTGAGCAAAATTTTAACA
80713079 ATTTT
1 ATTTT
80713084 GCCTTTAGTA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
25 5 0.19
26 22 0.81
ACGTcount: A:0.35, C:0.16, G:0.05, T:0.44
Consensus pattern (26 bp):
ATTTTACCCTGAGCAAAATTTTAACA
Found at i:80713091 original size:26 final size:26
Alignment explanation
Indices: 80713041--80713099 Score: 82
Period size: 26 Copynumber: 2.3 Consensus size: 26
80713031 TATCCCTGAC
*
80713041 AAAATTTTGACAATTTTACCCTTAGT
1 AAAATTTTAACAATTTTACCCTTAGT
* *
80713067 AAAATTTTAACAATTTTGCCTTTAGT
1 AAAATTTTAACAATTTTACCCTTAGT
*
80713093 AAGATTT
1 AAAATTT
80713100 CGAGAAAATA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.36, C:0.12, G:0.08, T:0.44
Consensus pattern (26 bp):
AAAATTTTAACAATTTTACCCTTAGT
Found at i:80716231 original size:13 final size:13
Alignment explanation
Indices: 80716213--80716263 Score: 84
Period size: 13 Copynumber: 3.9 Consensus size: 13
80716203 AATTTGGCAA
80716213 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
80716226 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
* *
80716239 TGCTGTGGAAAAG
1 TGCTTTTGAAAAG
80716252 TGCTTTTGAAAA
1 TGCTTTTGAAAA
80716264 ATTTGGTTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 34 1.00
ACGTcount: A:0.31, C:0.08, G:0.25, T:0.35
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:80724117 original size:23 final size:25
Alignment explanation
Indices: 80724089--80724139 Score: 70
Period size: 23 Copynumber: 2.1 Consensus size: 25
80724079 AAATTATACC
*
80724089 TTAATTAAG-CTTAATTA-ATTAGT
1 TTAATTAAGACTTAATTATATTAAT
*
80724112 TTAATTAAGACTTTATTATATTAAT
1 TTAATTAAGACTTAATTATATTAAT
80724137 TTA
1 TTA
80724140 TCTATTAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 9 0.38
24 7 0.29
25 8 0.33
ACGTcount: A:0.39, C:0.04, G:0.06, T:0.51
Consensus pattern (25 bp):
TTAATTAAGACTTAATTATATTAAT
Found at i:80732701 original size:19 final size:18
Alignment explanation
Indices: 80732663--80732727 Score: 53
Period size: 19 Copynumber: 3.4 Consensus size: 18
80732653 TTTTTCAATT
80732663 TTTATAAAAGGTGTA-AAAA
1 TTTATAAAA-GT-TATAAAA
80732682 TTTATAAAA-TATATAGAAA
1 TTTATAAAAGT-TATA-AAA
* *
80732701 TATAAAAAAGTTATAAAA
1 TTTATAAAAGTTATAAAA
80732719 TTTTATAAA
1 -TTTATAAA
80732728 GTCGTAAGAA
Statistics
Matches: 37, Mismatches: 5, Indels: 8
0.74 0.10 0.16
Matches are distributed among these distances:
17 3 0.08
18 4 0.11
19 29 0.78
20 1 0.03
ACGTcount: A:0.57, C:0.00, G:0.08, T:0.35
Consensus pattern (18 bp):
TTTATAAAAGTTATAAAA
Found at i:80732928 original size:10 final size:10
Alignment explanation
Indices: 80732911--80733046 Score: 51
Period size: 11 Copynumber: 14.3 Consensus size: 10
80732901 TAGGGGTCAT
80732911 TAATTTTTTA
1 TAATTTTTTA
*
80732921 TGA-TTTTTA
1 TAATTTTTTA
**
80732930 TAAAATTTTA
1 TAATTTTTTA
80732940 TAA-TTTTT-
1 TAATTTTTTA
80732948 T-A-TTTTTA
1 TAATTTTTTA
*
80732956 -AAATTTTTA
1 TAATTTTTTA
*** *
80732965 TAAAAAATTTC
1 T-AATTTTTTA
*
80732976 TAATTTTTAAA
1 TAATTTTT-TA
80732987 TAATTTTTTAA
1 TAATTTTTT-A
*
80732998 TAA--ATTT-
1 TAATTTTTTA
80733005 TAATTTTTT-
1 TAATTTTTTA
80733014 T-ATTTTTTA
1 TAATTTTTTA
*
80733023 TAATTTTTTTC
1 TAA-TTTTTTA
*
80733034 TAATTTTTAA
1 TAATTTTTTA
80733044 TAA
1 TAA
80733047 GAGTAGGAAT
Statistics
Matches: 95, Mismatches: 18, Indels: 26
0.68 0.13 0.19
Matches are distributed among these distances:
7 9 0.09
8 9 0.09
9 26 0.27
10 23 0.24
11 28 0.29
ACGTcount: A:0.35, C:0.01, G:0.01, T:0.62
Consensus pattern (10 bp):
TAATTTTTTA
Found at i:80732929 original size:9 final size:9
Alignment explanation
Indices: 80732915--80733030 Score: 60
Period size: 9 Copynumber: 12.6 Consensus size: 9
80732905 GGTCATTAAT
*
80732915 TTTTTATGA
1 TTTTTATAA
80732924 TTTTTATAAA
1 TTTTTAT-AA
*
80732934 ATTTTATAA
1 TTTTTATAA
80732943 TTTTT-T-A
1 TTTTTATAA
*
80732950 TTTTTAAAA
1 TTTTTATAA
80732959 TTTTTATAAAA
1 TTTTTAT--AA
** *
80732970 AATTTCTAA
1 TTTTTATAA
80732979 TTTTTAAATAA
1 TTTTT--ATAA
80732990 TTTTT-TAA
1 TTTTTATAA
*
80732998 TAAATTT-TAA
1 T--TTTTATAA
* *
80733008 TTTTTTTAT
1 TTTTTATAA
80733017 TTTTTATAA
1 TTTTTATAA
80733026 TTTTT
1 TTTTT
80733031 TTCTAATTTT
Statistics
Matches: 81, Mismatches: 16, Indels: 20
0.69 0.14 0.17
Matches are distributed among these distances:
7 6 0.07
8 8 0.10
9 39 0.48
10 14 0.17
11 14 0.17
ACGTcount: A:0.34, C:0.01, G:0.01, T:0.64
Consensus pattern (9 bp):
TTTTTATAA
Found at i:80732973 original size:29 final size:30
Alignment explanation
Indices: 80732941--80733012 Score: 87
Period size: 29 Copynumber: 2.5 Consensus size: 30
80732931 AAAATTTTAT
*
80732941 AATTTTTTATTTTT-AA-AATTTTTATAAAA
1 AATTTTTAATTTTTAAATAATTTTT-TAAAA
* *
80732970 AATTTCTAATTTTTAAATAATTTTTTAATA
1 AATTTTTAATTTTTAAATAATTTTTTAAAA
80733000 AA-TTTTAATTTTT
1 AATTTTTAATTTTT
80733013 TTATTTTTTA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
29 22 0.59
30 8 0.22
31 7 0.19
ACGTcount: A:0.39, C:0.01, G:0.00, T:0.60
Consensus pattern (30 bp):
AATTTTTAATTTTTAAATAATTTTTTAAAA
Found at i:80733044 original size:18 final size:18
Alignment explanation
Indices: 80732987--80733044 Score: 64
Period size: 18 Copynumber: 3.2 Consensus size: 18
80732977 AATTTTTAAA
* *
80732987 TAATTTTTTAATAAATTT
1 TAATTTTTTTATAATTTT
*
80733005 TAATTTTTTTAT-TTTTT
1 TAATTTTTTTATAATTTT
*
80733022 ATAATTTTTTTCTAATTTT
1 -TAATTTTTTTATAATTTT
80733041 TAAT
1 TAAT
80733045 AAGAGTAGGA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
17 3 0.09
18 26 0.79
19 4 0.12
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (18 bp):
TAATTTTTTTATAATTTT
Found at i:80734030 original size:22 final size:22
Alignment explanation
Indices: 80733984--80734030 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
80733974 ATAAAAAATG
* *
80733984 AAATAAATATATAAAATTTATA
1 AAATAAATATATAAAATCTAGA
*
80734006 AAATATATATATAAAATCTAGA
1 AAATAAATATATAAAATCTAGA
80734028 AAA
1 AAA
80734031 AAAAACATAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (22 bp):
AAATAAATATATAAAATCTAGA
Found at i:80734060 original size:12 final size:12
Alignment explanation
Indices: 80734032--80734080 Score: 62
Period size: 12 Copynumber: 3.9 Consensus size: 12
80734022 TCTAGAAAAA
*
80734032 AAAACATAAATTT
1 AAAA-ATAAAATT
*
80734045 AAAAAAAAAATT
1 AAAAATAAAATT
80734057 AAAAATAAAATAT
1 AAAAATAAAAT-T
80734070 AAAAATAAAAT
1 AAAAATAAAAT
80734081 ATTTGAAAAG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
12 16 0.50
13 16 0.50
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.22
Consensus pattern (12 bp):
AAAAATAAAATT
Found at i:80734079 original size:13 final size:13
Alignment explanation
Indices: 80734039--80734082 Score: 63
Period size: 13 Copynumber: 3.5 Consensus size: 13
80734029 AAAAAAACAT
* *
80734039 AAATTTAAAAAAA
1 AAATATAAAAATA
80734052 AAAT-TAAAAATA
1 AAATATAAAAATA
80734064 AAATATAAAAATA
1 AAATATAAAAATA
80734077 AAATAT
1 AAATAT
80734083 TTGAAAAGAA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
12 11 0.38
13 18 0.62
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (13 bp):
AAATATAAAAATA
Found at i:80738075 original size:30 final size:30
Alignment explanation
Indices: 80738039--80738128 Score: 119
Period size: 30 Copynumber: 3.0 Consensus size: 30
80738029 AGTCTTTTAA
*
80738039 ATTTCCAAACCCGTCTAATTTCAAAATTGG
1 ATTTCCAAATCCGTCTAATTTCAAAATTGG
* * *
80738069 ATTTCCATATCCATCTAATTTCAAATTTGG
1 ATTTCCAAATCCGTCTAATTTCAAAATTGG
*
80738099 ATTTCCAAATCTGTCTGAA-TTCAAAATTGG
1 ATTTCCAAATCCGTCT-AATTTCAAAATTGG
80738129 TGTAAAAATT
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
30 49 0.96
31 2 0.04
ACGTcount: A:0.32, C:0.20, G:0.10, T:0.38
Consensus pattern (30 bp):
ATTTCCAAATCCGTCTAATTTCAAAATTGG
Found at i:80742151 original size:47 final size:47
Alignment explanation
Indices: 80742088--80742592 Score: 785
Period size: 47 Copynumber: 10.6 Consensus size: 47
80742078 CCCTTCGGGA
* * * * *
80742088 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
80742135 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
80742182 CTCATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
80742229 CTTATCACATATATATACACTTTCACATTCATCACATTGGTCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
80742278 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
80742325 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
80742372 CTTATCACATATATATACACTTTCACATTCATCACATCCGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
80742421 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
80742470 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
80742517 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
80742566 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
80742593 ACCAACCCTT
Statistics
Matches: 425, Mismatches: 27, Indels: 12
0.92 0.06 0.03
Matches are distributed among these distances:
47 244 0.57
49 181 0.43
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:80742287 original size:96 final size:96
Alignment explanation
Indices: 80742088--80742592 Score: 829
Period size: 96 Copynumber: 5.3 Consensus size: 96
80742078 CCCTTCGGGA
* * * * * * *
80742088 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCATTCGGCCCTGTCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
* *
80742151 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATTGGCCATTCGGC
*
80742182 CTCATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
80742247 ACTTTCACATTCATCACATTGGTCATTCGGC
66 ACTTTCACATTCATCACATTGGCCATTCGGC
*
80742278 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
* *
80742341 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATTGGCCATTCGGC
*
80742372 CTTATCACATATATATACACTTTCACATTCATCACATCCGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
80742437 ACACTTTCACATTCATCACATTGGCCATTCGGC
64 ACACTTTCACATTCATCACATTGGCCATTCGGC
80742470 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
80742535 ACTTTCACATTCATCACATTGGCCATTCGGC
66 ACTTTCACATTCATCACATTGGCCATTCGGC
80742566 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
80742593 ACCAACCCTT
Statistics
Matches: 384, Mismatches: 21, Indels: 10
0.93 0.05 0.02
Matches are distributed among these distances:
94 91 0.24
96 248 0.65
98 45 0.12
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:80742357 original size:143 final size:143
Alignment explanation
Indices: 80742088--80742592 Score: 870
Period size: 143 Copynumber: 3.5 Consensus size: 143
80742078 CCCTTCGGGA
* * * *
80742088 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCATTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
*
80742151 ACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
80742216 TCGGCCATTAGGC
131 TCGGCCATTAGGC
*
80742229 CTTATCACATATATATACACTTTCACATTCATCACATTGGTCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
*
80742294 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
80742359 TCGGCCATTAGGC
131 TCGGCCATTAGGC
** *
80742372 CTTATCACATATATATACACTTTCACATTCATCACATCCGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATAT
* *
80742437 ACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCA
64 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
80742502 CATCGGCCATTAGGC
129 CATCGGCCATTAGGC
80742517 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
80742582 ACTTTCACATT
66 ACTTTCACATT
80742593 ACCAACCCTT
Statistics
Matches: 343, Mismatches: 17, Indels: 6
0.94 0.05 0.02
Matches are distributed among these distances:
141 10 0.03
142 1 0.00
143 195 0.57
145 137 0.40
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (143 bp):
CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGC
Found at i:80742922 original size:40 final size:39
Alignment explanation
Indices: 80742817--80742958 Score: 162
Period size: 40 Copynumber: 3.6 Consensus size: 39
80742807 GCTACTCGTT
* *
80742817 CAAATGCCTTCGGGACATAGCCCGATTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCGGATT-TAGTAACTCGCA
*
80742857 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTT-AGCCGGATTTAGTAACTCGCA
* * * *
80742897 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAG-CCGGATTTAGTAAC-TCGCA
80742938 CAAA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGACTTAGCC
80742959 CAGACATCAT
Statistics
Matches: 89, Mismatches: 8, Indels: 11
0.82 0.07 0.10
Matches are distributed among these distances:
39 6 0.07
40 65 0.73
41 18 0.20
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCGGATTTAGTAACTCGCA
Found at i:80746394 original size:40 final size:40
Alignment explanation
Indices: 80746362--80746551 Score: 308
Period size: 40 Copynumber: 4.8 Consensus size: 40
80746352 CCAGCATGAT
* * * *
80746362 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
80746402 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
80746442 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
80746482 TGCTCTTCGGGACTTAGCCCGGGTACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
80746522 TGCTCTTCGGGACTTAGCCCGGATACATCA
1 TGCTCTTCGGGACTTAGCCCGGATACATCA
80746552 TCGTCGAGAC
Statistics
Matches: 138, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 138 1.00
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:80748835 original size:47 final size:47
Alignment explanation
Indices: 80748774--80748957 Score: 262
Period size: 47 Copynumber: 3.9 Consensus size: 47
80748764 CTTCGGGACT
* * * * *
80748774 TATCACATTTATACACTTTCACATCCATCACGTTGGCCATTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
80748821 TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGG-CC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
80748867 TCATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 T-ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
80748915 TATCACATATATATACACTTTCACATTCATCACATTGGCCATT
1 TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATT
80748958 CACATTCATC
Statistics
Matches: 124, Mismatches: 9, Indels: 6
0.89 0.06 0.04
Matches are distributed among these distances:
46 3 0.02
47 85 0.69
48 2 0.02
49 34 0.27
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
Found at i:80748962 original size:22 final size:22
Alignment explanation
Indices: 80748934--80748980 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
80748924 TATATACACT
*
80748934 TTCACATTCATCACATTGGCCA
1 TTCACATTCATCACATCGGCCA
*
80748956 TTCACATTCATCACATCGGCTA
1 TTCACATTCATCACATCGGCCA
80748978 TTC
1 TTC
80748981 GGCCTTATCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.26, C:0.32, G:0.09, T:0.34
Consensus pattern (22 bp):
TTCACATTCATCACATCGGCCA
Found at i:80748969 original size:96 final size:93
Alignment explanation
Indices: 80748772--80749249 Score: 490
Period size: 96 Copynumber: 4.8 Consensus size: 93
80748762 CCCTTCGGGA
* * * * *
80748772 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCATTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
80748837 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTA-GC
* * *
80748866 CTCATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATAC
*
80748931 ACTTTCACATTCATCACATTGGCCATTCA-C
64 ACTTTCACATTCATCACATCGGCCATT-AGC
* * * * **
80748961 ATTCATCACATCGGCTATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCAT
1 CTT-ATCACAT---ATATAC--ACTT-TCAC--AT-T-CA---TCACATT-GGC-CAT-------
* *
80749026 TAGGCCTTATCACATATATACACTTTCACATTCATCACATCCGCCATTAGGC
43 TCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA-GC
80749078 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
80749143 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTA-GC
*
80749174 CTTATCACATATATATACACTTTCACATTCATCACATTGGTCATTCGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
80749239 ACTTTCACATT
64 ACTTTCACATT
80749250 ACCAACCCTT
Statistics
Matches: 326, Mismatches: 28, Indels: 58
0.79 0.07 0.14
Matches are distributed among these distances:
94 47 0.14
95 2 0.01
96 166 0.51
97 1 0.00
99 4 0.01
101 3 0.01
102 4 0.01
103 3 0.01
104 3 0.01
105 8 0.02
106 2 0.01
108 2 0.01
109 7 0.02
110 3 0.01
111 3 0.01
112 4 0.01
113 3 0.01
115 5 0.02
116 38 0.12
117 3 0.01
118 15 0.05
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (93 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGC
Found at i:80749009 original size:47 final size:47
Alignment explanation
Indices: 80748956--80749249 Score: 480
Period size: 47 Copynumber: 6.2 Consensus size: 47
80748946 ACATTGGCCA
* *
80748956 TTCACATTCATCACATCGGCTATTCGGCCTTATCACATATATACACT
1 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
80749003 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
1 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
*
80749050 TTCACATTCATCACATCCGCCATTAGGCCTTATCACATATATATACACT
1 TTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACT
* *
80749099 TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACT
1 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
80749146 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACT
1 TTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACT
* * *
80749195 TTCACATTCATCACATTGGTCATTCGGCCTTATCACATATATACACT
1 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
80749242 TTCACATT
1 TTCACATT
80749250 ACCAACCCTT
Statistics
Matches: 232, Mismatches: 11, Indels: 8
0.92 0.04 0.03
Matches are distributed among these distances:
47 144 0.62
49 88 0.38
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (47 bp):
TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
Found at i:80749040 original size:69 final size:70
Alignment explanation
Indices: 80748885--80749026 Score: 241
Period size: 69 Copynumber: 2.0 Consensus size: 70
80748875 TATATACACT
80748885 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACAT
1 TTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATACACTTTCACATTCATCACAT
*
80748950 TGGCCA
65 CGGCCA
* *
80748956 TTCACATTCATCACATCGGCTATTCGGCCTTATCAC-ATATATACACTTTCACATTCATCACATC
1 TTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCACATC
80749020 GGCCA
66 GGCCA
80749025 TT
1 TT
80749027 AGGCCTTATC
Statistics
Matches: 68, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
69 34 0.50
71 34 0.50
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.33
Consensus pattern (70 bp):
TTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCACATC
GGCCA
Found at i:80749063 original size:143 final size:140
Alignment explanation
Indices: 80748954--80749249 Score: 418
Period size: 143 Copynumber: 2.1 Consensus size: 140
80748944 TCACATTGGC
*
80748954 CATTCACATTCATCACATCGGCTATTCGGCCTTATCACATATATACACTTTCACATTCATCACAT
1 CATTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACAT
*
80749019 CGGCCATTAGGCCTTATCAC-ATATATACACTTTCACATTCATCACATCCGCCATTAGGCCTTAT
66 CGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCACAT----CATTAGACCTTAT
*
80749083 CACATATATATACA
127 CACATATACATACA
* *
80749097 CTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACAT
1 CATTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACAT
* *
80749162 CGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGTCATTCGGCCTTA
66 CGGCCATTAGGCCTTATCACA-ATATATACACTTTCACATTCATCACA----TCATTAGACCTTA
80749227 TCACATAT--ATACA
126 TCACATATACATACA
*
80749240 CTTTCACATT
1 CATTCACATT
80749250 ACCAACCCTT
Statistics
Matches: 143, Mismatches: 4, Indels: 12
0.90 0.03 0.08
Matches are distributed among these distances:
143 97 0.68
145 45 0.31
149 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (140 bp):
CATTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACAT
CGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCACATCATTAGACCTTATCACA
TATACATACA
Found at i:80749136 original size:165 final size:165
Alignment explanation
Indices: 80748791--80749123 Score: 594
Period size: 165 Copynumber: 2.0 Consensus size: 165
80748781 TTTATACACT
* * * * *
80748791 TTCACATCCATCACGTTGGCCATTCGGCCCTGTCACATATATACACTTTCACATTCATCACATCG
1 TTCACATTCATCACATCGGCTATTCGGCCCTATCACATATATACACTTTCACATTCATCACATCG
*
80748856 GCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
66 GCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACATCCGCCATTAGGCCTTATCAC
80748921 ATATATATACACTTTCACATTCATCACATTGGCCA
131 ATATATATACACTTTCACATTCATCACATTGGCCA
*
80748956 TTCACATTCATCACATCGGCTATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCG
1 TTCACATTCATCACATCGGCTATTCGGCCCTATCACATATATACACTTTCACATTCATCACATCG
*
80749021 GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCCGCCATTAGGCCTTATCAC
66 GCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACATCCGCCATTAGGCCTTATCAC
80749086 ATATATATACACTTTCACATTCATCACATTGGCCA
131 ATATATATACACTTTCACATTCATCACATTGGCCA
80749121 TTC
1 TTC
80749124 GGCCTTATCA
Statistics
Matches: 160, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
165 160 1.00
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (165 bp):
TTCACATTCATCACATCGGCTATTCGGCCCTATCACATATATACACTTTCACATTCATCACATCG
GCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACATCCGCCATTAGGCCTTATCAC
ATATATATACACTTTCACATTCATCACATTGGCCA
Found at i:80749141 original size:212 final size:211
Alignment explanation
Indices: 80748772--80749169 Score: 654
Period size: 212 Copynumber: 1.9 Consensus size: 211
80748762 CCCTTCGGGA
* * * * *
80748772 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCATTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGCCCTATCACATATATACAC
*
80748837 TTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCCGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACATC
*
80748902 GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCACATTCAT
131 GGCCATTAGGCCTTATCACA-ATATATACACTTTCACATTCATCACATCGGCCATTCACATTCAT
80748967 CACATCGGCTATTCGGC
195 CACATCGGCTATTCGGC
* *
80748984 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGCCCTATCACATATATACAC
*
80749049 TTTCACATTCATCACATCCGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCCGCCATTAGGCCTCATCAC--ATATATACACTTTCACATTCATCACA
* *
80749114 TTGGCCATTCGGCCTTATCAC-ATATATACACTTTCACATTCATCACATCGGCCATT
129 TCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCACATCGGCCATT
80749170 AGGCCTTATC
Statistics
Matches: 172, Mismatches: 12, Indels: 4
0.91 0.06 0.02
Matches are distributed among these distances:
212 127 0.74
214 45 0.26
ACGTcount: A:0.28, C:0.31, G:0.08, T:0.33
Consensus pattern (211 bp):
CTTATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGCCCTATCACATATATACAC
TTTCACATTCATCACATCCGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTCACATTCATC
ACATCGGCTATTCGGC
Found at i:80749546 original size:40 final size:40
Alignment explanation
Indices: 80749474--80749616 Score: 166
Period size: 40 Copynumber: 3.6 Consensus size: 40
80749464 GCTACTCATT
* *
80749474 CAAATGCCTTCGGGACATAGCCAGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
80749514 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
80749554 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
80749595 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
80749617 AGACATCATT
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
39 3 0.03
40 73 0.82
41 13 0.15
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:80756289 original size:19 final size:19
Alignment explanation
Indices: 80756265--80756301 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
80756255 TTACATGCAG
80756265 CAACCAAAGGGTTTTATAA
1 CAACCAAAGGGTTTTATAA
*
80756284 CAACCAGAGGGTTTTATA
1 CAACCAAAGGGTTTTATA
80756302 GTCTCAGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.38, C:0.16, G:0.19, T:0.27
Consensus pattern (19 bp):
CAACCAAAGGGTTTTATAA
Found at i:80757523 original size:29 final size:29
Alignment explanation
Indices: 80757481--80757539 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
80757471 TTATGGAAGA
* * * *
80757481 GATGGAGAAGTTGTTCGTTGAGAGTTCGT
1 GATGAAGAACTTGTTCATTGAGAATTCGT
80757510 GATGAAGAACTTGTTCATTGAGAATTCGT
1 GATGAAGAACTTGTTCATTGAGAATTCGT
80757539 G
1 G
80757540 TCAATGTGGA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.25, C:0.08, G:0.32, T:0.34
Consensus pattern (29 bp):
GATGAAGAACTTGTTCATTGAGAATTCGT
Found at i:80758586 original size:47 final size:47
Alignment explanation
Indices: 80758517--80758612 Score: 174
Period size: 47 Copynumber: 2.0 Consensus size: 47
80758507 AACGCTCATA
80758517 ATGGACACACAAATTGAAATCTCTTCTCATCTTTTGGGGGCTCTTTT
1 ATGGACACACAAATTGAAATCTCTTCTCATCTTTTGGGGGCTCTTTT
**
80758564 ATGGACACACAAATTGAAATCTCTTCTCATCTTTTTTGGGCTCTTTT
1 ATGGACACACAAATTGAAATCTCTTCTCATCTTTTGGGGGCTCTTTT
80758611 AT
1 AT
80758613 AAACTTATCT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.24, C:0.21, G:0.15, T:0.41
Consensus pattern (47 bp):
ATGGACACACAAATTGAAATCTCTTCTCATCTTTTGGGGGCTCTTTT
Found at i:80759001 original size:21 final size:21
Alignment explanation
Indices: 80758975--80759018 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
80758965 CTATTCACAA
*
80758975 GCGTGCGCACTAATTGCTATG
1 GCGTGCGCACTAATCGCTATG
*
80758996 GCGTGCGCACTAATCGCTTTG
1 GCGTGCGCACTAATCGCTATG
80759017 GC
1 GC
80759019 ATGCCGCATG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.27, G:0.30, T:0.27
Consensus pattern (21 bp):
GCGTGCGCACTAATCGCTATG
Found at i:80759503 original size:29 final size:29
Alignment explanation
Indices: 80759461--80759520 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
80759451 TCATAGAACT
80759461 TACATACACACATTACATTACCATTTCCA
1 TACATACACACATTACATTACCATTTCCA
80759490 TACATACACACATTACATTACCATTTCCA
1 TACATACACACATTACATTACCATTTCCA
80759519 TA
1 TA
80759521 TTTATTCGAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.38, C:0.30, G:0.00, T:0.32
Consensus pattern (29 bp):
TACATACACACATTACATTACCATTTCCA
Found at i:80762147 original size:2 final size:2
Alignment explanation
Indices: 80762140--80762164 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
80762130 TCAATGAAAA
80762140 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
80762165 AAGCTCACGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:80772209 original size:25 final size:24
Alignment explanation
Indices: 80772162--80772214 Score: 61
Period size: 25 Copynumber: 2.2 Consensus size: 24
80772152 AACTACCGCA
80772162 GCTCTTTGTGAGCGTCCTAATATAG
1 GCTCTTTGTGAGCGTCCTAATAT-G
* * * *
80772187 GCTCTTTTTGAGCTTCTTGATATG
1 GCTCTTTGTGAGCGTCCTAATATG
80772211 GCTC
1 GCTC
80772215 GCTTGAACTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.15, C:0.21, G:0.23, T:0.42
Consensus pattern (24 bp):
GCTCTTTGTGAGCGTCCTAATATG
Found at i:80772408 original size:15 final size:15
Alignment explanation
Indices: 80772388--80772421 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
80772378 GCTCGAGAGA
80772388 GTGCTTCCTGATTAT
1 GTGCTTCCTGATTAT
80772403 GTGCTTCCTGATTAT
1 GTGCTTCCTGATTAT
80772418 GTGC
1 GTGC
80772422 CCTAATGGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.12, C:0.21, G:0.24, T:0.44
Consensus pattern (15 bp):
GTGCTTCCTGATTAT
Found at i:80775911 original size:4 final size:4
Alignment explanation
Indices: 80775902--80775936 Score: 52
Period size: 4 Copynumber: 8.2 Consensus size: 4
80775892 TTATTCTGTT
80775902 TAAA TAAA TAAA TAAA TAAA TAAA TGGAAA TAAA T
1 TAAA TAAA TAAA TAAA TAAA TAAA T--AAA TAAA T
80775937 TGAGCATTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
4 25 0.86
6 4 0.14
ACGTcount: A:0.69, C:0.00, G:0.06, T:0.26
Consensus pattern (4 bp):
TAAA
Found at i:80778195 original size:7 final size:7
Alignment explanation
Indices: 80778183--80778211 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
80778173 GAATCTCTCT
80778183 CTTTCAA
1 CTTTCAA
80778190 CTTTCAA
1 CTTTCAA
80778197 CTTTCAA
1 CTTTCAA
80778204 CTTTCAA
1 CTTTCAA
80778211 C
1 C
80778212 AATTGGGGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.28, C:0.31, G:0.00, T:0.41
Consensus pattern (7 bp):
CTTTCAA
Found at i:80778784 original size:3 final size:3
Alignment explanation
Indices: 80778759--80778811 Score: 52
Period size: 3 Copynumber: 17.3 Consensus size: 3
80778749 TAGTGGCGGT
* * * * *
80778759 AGG AGT AGG AGAG AGG TGG AGG AGG AGG AGG AGG AAG AGG ACG AAG
1 AGG AGG AGG AG-G AGG AGG AGG AGG AGG AGG AGG AGG AGG AGG AGG
80778805 AGG AGG A
1 AGG AGG A
80778812 AATAGTGACG
Statistics
Matches: 40, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
3 37 0.93
4 3 0.08
ACGTcount: A:0.38, C:0.02, G:0.57, T:0.04
Consensus pattern (3 bp):
AGG
Found at i:80780383 original size:3 final size:3
Alignment explanation
Indices: 80780377--80780406 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
80780367 AGTGAAGGTA
*
80780377 TAT TAT TAT TAT TAT TAT TAT TAT CAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
80780407 GTCATTTGTC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:80786284 original size:20 final size:20
Alignment explanation
Indices: 80786214--80786287 Score: 71
Period size: 20 Copynumber: 3.7 Consensus size: 20
80786204 TGTTGGAGTT
*
80786214 TGAATCGAGTT-AAACAACAA
1 TGAATCGA-TTCAAACAATAA
* *
80786234 AGAATCGATTTAAACAATAA
1 TGAATCGATTCAAACAATAA
* *
80786254 TGAACCAATTCAAACAATAA
1 TGAATCGATTCAAACAATAA
80786274 -GCAATCGATTCAAA
1 TG-AATCGATTCAAA
80786288 GAAGCAAAAA
Statistics
Matches: 44, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
19 3 0.07
20 41 0.93
ACGTcount: A:0.51, C:0.16, G:0.11, T:0.22
Consensus pattern (20 bp):
TGAATCGATTCAAACAATAA
Found at i:80786302 original size:21 final size:21
Alignment explanation
Indices: 80786276--80786327 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
80786266 AACAATAAGC
*
80786276 AATCGATTCAAAGA-AGCAAAA
1 AATCGATTCAAA-ACAACAAAA
* *
80786297 AATCGATTTAAAACAACAAAC
1 AATCGATTCAAAACAACAAAA
80786318 AATCGATTCA
1 AATCGATTCA
80786328 TATAAACGAC
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
20 1 0.04
21 25 0.96
ACGTcount: A:0.54, C:0.17, G:0.10, T:0.19
Consensus pattern (21 bp):
AATCGATTCAAAACAACAAAA
Found at i:80787237 original size:32 final size:31
Alignment explanation
Indices: 80787201--80787261 Score: 77
Period size: 32 Copynumber: 1.9 Consensus size: 31
80787191 TTTATAACTA
* * *
80787201 AATTTGACCCTCAACCATTTTAAAATAAGTTG
1 AATTTGACCATCAACC-TTCTAAAAAAAGTTG
*
80787233 AATTTGGCCATCAACCTTCTAAAAAAAGT
1 AATTTGACCATCAACCTTCTAAAAAAAGT
80787262 CAAATTGTTG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
31 11 0.44
32 14 0.56
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (31 bp):
AATTTGACCATCAACCTTCTAAAAAAAGTTG
Found at i:80792382 original size:15 final size:15
Alignment explanation
Indices: 80792362--80792391 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
80792352 TTTAATGAGG
80792362 GTGAAAAAGTAATTC
1 GTGAAAAAGTAATTC
80792377 GTGAAAAAGTAATTC
1 GTGAAAAAGTAATTC
80792392 AACTTTCAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.07, G:0.20, T:0.27
Consensus pattern (15 bp):
GTGAAAAAGTAATTC
Found at i:80793871 original size:61 final size:62
Alignment explanation
Indices: 80793784--80794037 Score: 226
Period size: 63 Copynumber: 4.1 Consensus size: 62
80793774 AATATCTCTC
* * *
80793784 ACACGGCCTGG--ACACATGCTTATGTCCCTGGCCCGTGTGA-CTAATTTACAAACAGTAAGTT
1 ACACGGCCTGGACACACAT-C-TGTGTCCCTAGCCCGTGTGACCTAATTTACAAACAGTGAGTT
* * ** * * * *
80793845 ATATGGTTTGGACACACTTCTGTGTCCTTAGCCCGTGTGACTCTAATTTAAAAACAATGAGTT
1 ACACGGCCTGGACACACATCTGTGTCCCTAGCCCGTGTGAC-CTAATTTACAAACAGTGAGTT
* * * * *
80793908 ACACAGCCTGGACACACATCTGTGTCCCTAACCCATGTAACTCTGATTTACAAACAGTGAGTT
1 ACACGGCCTGGACACACATCTGTGTCCCTAGCCCGTGTGAC-CTAATTTACAAACAGTGAGTT
* * * * * * * *
80793971 ACACGGCCTCGACACACGTCTGTGTCCCTGGCCTGTGTGACTCTGATTCATAAACAATGAGTT
1 ACACGGCCTGGACACACATCTGTGTCCCTAGCCCGTGTGAC-CTAATTTACAAACAGTGAGTT
80794034 ACAC
1 ACAC
80794038 CACCTGACAC
Statistics
Matches: 154, Mismatches: 35, Indels: 6
0.79 0.18 0.03
Matches are distributed among these distances:
61 24 0.16
62 1 0.01
63 129 0.84
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.28
Consensus pattern (62 bp):
ACACGGCCTGGACACACATCTGTGTCCCTAGCCCGTGTGACCTAATTTACAAACAGTGAGTT
Found at i:80793921 original size:63 final size:63
Alignment explanation
Indices: 80793853--80794037 Score: 235
Period size: 63 Copynumber: 2.9 Consensus size: 63
80793843 TTATATGGTT
* * *
80793853 TGGACACACTTCTGTGTCCTTAGCCCGTGTGACTCTAATTTAAAAACAATGAGTTACACAGCC
1 TGGACACACATCTGTGTCCCTAGCCCGTGTGACTCTGATTTAAAAACAATGAGTTACACAGCC
* * * * * *
80793916 TGGACACACATCTGTGTCCCTAACCCATGTAACTCTGATTTACAAACAGTGAGTTACACGGCC
1 TGGACACACATCTGTGTCCCTAGCCCGTGTGACTCTGATTTAAAAACAATGAGTTACACAGCC
* * * * * *
80793979 TCGACACACGTCTGTGTCCCTGGCCTGTGTGACTCTGATTCATAAACAATGAGTTACAC
1 TGGACACACATCTGTGTCCCTAGCCCGTGTGACTCTGATTTAAAAACAATGAGTTACAC
80794038 CACCTGACAC
Statistics
Matches: 103, Mismatches: 19, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
63 103 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.28
Consensus pattern (63 bp):
TGGACACACATCTGTGTCCCTAGCCCGTGTGACTCTGATTTAAAAACAATGAGTTACACAGCC
Found at i:80796264 original size:46 final size:46
Alignment explanation
Indices: 80796214--80796384 Score: 161
Period size: 46 Copynumber: 3.7 Consensus size: 46
80796204 GTTGAGCATT
*
80796214 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTC
* * * * * *
80796260 CGAACTCGTTGAGCTGAGTTCGAGTTC-GTGA--GATGTAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CGTC
* * *
80796307 CGAACTAGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG-C
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTC
* *
80796352 CTGAGCTTGTTGAGTTGAGTCCGAGTTCACTTA
1 C-GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
80796385 GGGGCGGGTT
Statistics
Matches: 99, Mismatches: 18, Indels: 16
0.74 0.14 0.12
Matches are distributed among these distances:
43 6 0.06
45 5 0.05
46 54 0.55
47 26 0.26
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTC
Found at i:80796377 original size:93 final size:93
Alignment explanation
Indices: 80796209--80796379 Score: 245
Period size: 93 Copynumber: 1.8 Consensus size: 93
80796199 GGATGGTTGA
* * *
80796209 GCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGC
1 GCATCCGAACTAGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAGC
*
80796274 TGAGTTCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * *
80796302 GCATCCGAACTAGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG-CCTGAGCTTGTTGAG
1 GCATCCGAACTAGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCC-GAACTCGTTGAG
*
80796366 TTGAGTCCGAGTTC
65 CTGAGTCCGAGTTC
80796380 ACTTAGGGGC
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
92 2 0.03
93 66 0.97
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTAGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAGC
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:80804828 original size:63 final size:63
Alignment explanation
Indices: 80804761--80804889 Score: 168
Period size: 63 Copynumber: 2.0 Consensus size: 63
80804751 AATATCTCTC
** * * * *
80804761 ACATGGCCTGGACACACACTTGTGTCTCTGACCCATGTGACTTTGATTCACAAATAGTGAGTT
1 ACATGGCCTGGACACACACCCGTGTCCCTGACCCATGTGACTCTGATTCACAAACAATGAGTT
* ** *
80804824 ACATGGCTTGGACACACACCCGTGTCCCTGGTCCGTGTGACTCTGATTCACAAACAATGAGTT
1 ACATGGCCTGGACACACACCCGTGTCCCTGACCCATGTGACTCTGATTCACAAACAATGAGTT
80804887 ACA
1 ACA
80804890 CGACTTGTCA
Statistics
Matches: 56, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
63 56 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (63 bp):
ACATGGCCTGGACACACACCCGTGTCCCTGACCCATGTGACTCTGATTCACAAACAATGAGTT
Found at i:80815064 original size:18 final size:18
Alignment explanation
Indices: 80815041--80815100 Score: 56
Period size: 18 Copynumber: 3.4 Consensus size: 18
80815031 ATGATTGGTG
80815041 AATGGTTGAATGTGATTT
1 AATGGTTGAATGTGATTT
*
80815059 AATGGTT---T-TGCTTGGT
1 AATGGTTGAATGTGATT--T
80815075 GAATGGTTGAATGTGATTT
1 -AATGGTTGAATGTGATTT
80815094 AATGGTT
1 AATGGTT
80815101 TTACTATTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 14
0.67 0.04 0.29
Matches are distributed among these distances:
14 4 0.12
15 1 0.03
16 1 0.03
17 7 0.21
18 14 0.42
19 1 0.03
20 1 0.03
21 4 0.12
ACGTcount: A:0.23, C:0.02, G:0.30, T:0.45
Consensus pattern (18 bp):
AATGGTTGAATGTGATTT
Found at i:80815074 original size:35 final size:35
Alignment explanation
Indices: 80815035--80815102 Score: 136
Period size: 35 Copynumber: 1.9 Consensus size: 35
80815025 CTACATATGA
80815035 TTGGTGAATGGTTGAATGTGATTTAATGGTTTTGC
1 TTGGTGAATGGTTGAATGTGATTTAATGGTTTTGC
80815070 TTGGTGAATGGTTGAATGTGATTTAATGGTTTT
1 TTGGTGAATGGTTGAATGTGATTTAATGGTTTT
80815103 ACTATTAAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.21, C:0.01, G:0.31, T:0.47
Consensus pattern (35 bp):
TTGGTGAATGGTTGAATGTGATTTAATGGTTTTGC
Found at i:80820479 original size:31 final size:32
Alignment explanation
Indices: 80820415--80820481 Score: 86
Period size: 30 Copynumber: 2.2 Consensus size: 32
80820405 TAATTTTTTT
*
80820415 AAAAATTTTAGAGTTCTAATTAGAATTTTAAA
1 AAAAATTTAAGAGTTCTAATTAGAATTTTAAA
*
80820447 AAAAATTTAAG-GTT-TAATTA-AGATTTTCAA
1 AAAAATTTAAGAGTTCTAATTAGA-ATTTTAAA
80820477 AAAAA
1 AAAAA
80820482 CATAAGGATT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
29 1 0.03
30 18 0.56
31 3 0.09
32 10 0.31
ACGTcount: A:0.51, C:0.03, G:0.09, T:0.37
Consensus pattern (32 bp):
AAAAATTTAAGAGTTCTAATTAGAATTTTAAA
Found at i:80820488 original size:30 final size:30
Alignment explanation
Indices: 80820431--80820488 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
80820421 TTTAGAGTTC
**
80820431 TAATTAGAATTTTAAAAAAAATTTAAGGTT
1 TAATTAGAATTTTAAAAAAAACATAAGGTT
*
80820461 TAATTA-AGATTTTCAAAAAAACATAAGG
1 TAATTAGA-ATTTTAAAAAAAACATAAGG
80820489 ATTTTAATAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 1 0.04
30 23 0.96
ACGTcount: A:0.52, C:0.03, G:0.10, T:0.34
Consensus pattern (30 bp):
TAATTAGAATTTTAAAAAAAACATAAGGTT
Found at i:80821108 original size:20 final size:21
Alignment explanation
Indices: 80821071--80821113 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 21
80821061 TTTGTTTTTG
80821071 AATTTTTATGAA-CATTTTAT
1 AATTTTTATGAATCATTTTAT
* **
80821091 AATTTTTTTGAATTTTTTTAT
1 AATTTTTATGAATCATTTTAT
80821112 AA
1 AA
80821114 AATTTAAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.33, C:0.02, G:0.05, T:0.60
Consensus pattern (21 bp):
AATTTTTATGAATCATTTTAT
Found at i:80824688 original size:16 final size:16
Alignment explanation
Indices: 80824662--80824701 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
80824652 TGGGGGAATG
*
80824662 AAATAGGGTTGTAATA
1 AAATAGAGTTGTAATA
*
80824678 TAATAGAGTTGTAATA
1 AAATAGAGTTGTAATA
80824694 AAATAGAG
1 AAATAGAG
80824702 CTATAATCAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.47, C:0.00, G:0.23, T:0.30
Consensus pattern (16 bp):
AAATAGAGTTGTAATA
Found at i:80824906 original size:37 final size:37
Alignment explanation
Indices: 80824865--80824935 Score: 88
Period size: 37 Copynumber: 1.9 Consensus size: 37
80824855 TTGTTATTAA
* * * *
80824865 ATTTTAATAAAATTATTATTAAATATAATTTAATCAT
1 ATTTTAACAAAATTATTACTAAATACAAATTAATCAT
* *
80824902 ATTTTAACATAATTTTTACTAAATACAAATTAAT
1 ATTTTAACAAAATTATTACTAAATACAAATTAAT
80824936 AAAATAATAT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
37 28 1.00
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.46
Consensus pattern (37 bp):
ATTTTAACAAAATTATTACTAAATACAAATTAATCAT
Found at i:80824955 original size:14 final size:14
Alignment explanation
Indices: 80824938--80824990 Score: 61
Period size: 14 Copynumber: 3.5 Consensus size: 14
80824928 AAATTAATAA
*
80824938 AATAATATATAATT
1 AATAAAATATAATT
80824952 AATAAAATATAATT
1 AATAAAATATAATT
80824966 ATTATTAAAATATGAATT
1 A--A-TAAAATAT-AATT
80824984 AATAAAA
1 AATAAAA
80824991 ATTATAATAT
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
14 14 0.41
15 5 0.15
16 2 0.06
17 8 0.24
18 5 0.15
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (14 bp):
AATAAAATATAATT
Found at i:80835692 original size:19 final size:19
Alignment explanation
Indices: 80835655--80835692 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
80835645 GCCCCAAAGC
*
80835655 TCAAAAATTAATTTTTTTT
1 TCAAAAATTAATTTGTTTT
80835674 TCAAAAATT-ATTATGTTTT
1 TCAAAAATTAATT-TGTTTT
80835693 ATGACATGCT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 3 0.18
19 14 0.82
ACGTcount: A:0.37, C:0.05, G:0.03, T:0.55
Consensus pattern (19 bp):
TCAAAAATTAATTTGTTTT
Found at i:80836576 original size:25 final size:25
Alignment explanation
Indices: 80836517--80836628 Score: 131
Period size: 25 Copynumber: 4.5 Consensus size: 25
80836507 ATACATGTAT
*
80836517 GCTCATACGAGC--AATAAACGGTAA
1 GCTCATACGAGCTGAAT-ATCGGTAA
* *
80836541 GCTCATTCGAGCTGAATATCAGTAA
1 GCTCATACGAGCTGAATATCGGTAA
* *
80836566 GCTCCTACGAGCTGAATAACGGTAA
1 GCTCATACGAGCTGAATATCGGTAA
*
80836591 GCTCTTACGAGCTGAGA-ATCGGTAA
1 GCTCATACGAGCTGA-ATATCGGTAA
80836616 GCTCATACGAGCT
1 GCTCATACGAGCT
80836629 ACAGTGAGTC
Statistics
Matches: 75, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
24 11 0.15
25 60 0.80
26 4 0.05
ACGTcount: A:0.32, C:0.22, G:0.23, T:0.22
Consensus pattern (25 bp):
GCTCATACGAGCTGAATATCGGTAA
Found at i:80836602 original size:50 final size:50
Alignment explanation
Indices: 80836517--80836629 Score: 153
Period size: 50 Copynumber: 2.3 Consensus size: 50
80836507 ATACATGTAT
80836517 GCTCATACGAGC-AATAAACGGTAAGCTCATTCGAGCTGA-ATATCAGTAA
1 GCTCATACGAGCTAATAAACGGTAAGCTCATTCGAGCTGAGA-ATCAGTAA
* *
80836566 GCTCCTACGAGCTGAAT-AACGGTAAGCTC-TTACGAGCTGAGAATCGGTAA
1 GCTCATACGAGCT-AATAAACGGTAAGCTCATT-CGAGCTGAGAATCAGTAA
80836616 GCTCATACGAGCTA
1 GCTCATACGAGCTA
80836630 CAGTGAGTCT
Statistics
Matches: 57, Mismatches: 3, Indels: 8
0.84 0.04 0.12
Matches are distributed among these distances:
49 14 0.25
50 39 0.68
51 4 0.07
ACGTcount: A:0.33, C:0.22, G:0.23, T:0.22
Consensus pattern (50 bp):
GCTCATACGAGCTAATAAACGGTAAGCTCATTCGAGCTGAGAATCAGTAA
Found at i:80842424 original size:25 final size:25
Alignment explanation
Indices: 80842394--80842488 Score: 111
Period size: 25 Copynumber: 3.8 Consensus size: 25
80842384 AAGCGATAAA
*
80842394 CGGTAAGCTCATTCGAGCTAAATAT
1 CGGTAAGCTCATACGAGCTAAATAT
* * *
80842419 CGGTAAGCTCCTACGAGCTGAATAA
1 CGGTAAGCTCATACGAGCTAAATAT
* *
80842444 CGGTAAGCTCTTACGAGCTGAGA-AT
1 CGGTAAGCTCATACGAGCT-AAATAT
*
80842469 CTGTAAGCTCATACGAGCTA
1 CGGTAAGCTCATACGAGCTA
80842489 CGGTGAGTCC
Statistics
Matches: 59, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
24 1 0.02
25 57 0.97
26 1 0.02
ACGTcount: A:0.31, C:0.22, G:0.23, T:0.24
Consensus pattern (25 bp):
CGGTAAGCTCATACGAGCTAAATAT
Found at i:80842475 original size:50 final size:50
Alignment explanation
Indices: 80842376--80842487 Score: 133
Period size: 50 Copynumber: 2.3 Consensus size: 50
80842366 ATACATGTAT
*
80842376 GCTCATACAAGC-G-ATAAACGGTAAGCTCATTCGAGCTAAATATCGGTAA
1 GCTCATACGAGCTGAAT-AACGGTAAGCTCATTCGAGCTAAATATCGGTAA
* * *
80842425 GCTCCTACGAGCTGAATAACGGTAAGCTC-TTACGAGCTGAGA-ATCTGTAA
1 GCTCATACGAGCTGAATAACGGTAAGCTCATT-CGAGCT-AAATATCGGTAA
80842475 GCTCATACGAGCT
1 GCTCATACGAGCT
80842488 ACGGTGAGTC
Statistics
Matches: 54, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
49 12 0.22
50 38 0.70
51 4 0.07
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.23
Consensus pattern (50 bp):
GCTCATACGAGCTGAATAACGGTAAGCTCATTCGAGCTAAATATCGGTAA
Found at i:80845389 original size:25 final size:25
Alignment explanation
Indices: 80845308--80845403 Score: 95
Period size: 25 Copynumber: 3.8 Consensus size: 25
80845298 ATGAGCGATA
* *
80845308 AACGGTAAGCTCATTCGAGCTAAAT
1 AACGGTAAGCTCATACGAGCTGAAT
* * *
80845333 ATCGATAAGCTCCTACGAGCTGAAT
1 AACGGTAAGCTCATACGAGCTGAAT
*
80845358 AACGGTAAGCTCTTACGAGCTGAGA-
1 AACGGTAAGCTCATACGAGCTGA-AT
** *
80845383 ATTGGTAAGCTCATATGAGCT
1 AACGGTAAGCTCATACGAGCT
80845404 ACGGTGAGTC
Statistics
Matches: 58, Mismatches: 12, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
25 57 0.98
26 1 0.02
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (25 bp):
AACGGTAAGCTCATACGAGCTGAAT
Found at i:80845392 original size:50 final size:50
Alignment explanation
Indices: 80845308--80845403 Score: 117
Period size: 50 Copynumber: 1.9 Consensus size: 50
80845298 ATGAGCGATA
*
80845308 AACGGTAAGCTCATTCGAGCTAAATATCGATAAGCTCCTACGAGCTGAAT
1 AACGGTAAGCTCATTCGAGCTAAATATCGATAAGCTCATACGAGCTGAAT
* *
80845358 AACGGTAAGCTC-TTACGAGCTGAGAAT-T-GGTAAGCTCATATGAGCT
1 AACGGTAAGCTCATT-CGAGCT-A-AATATCGATAAGCTCATACGAGCT
80845404 ACGGTGAGTC
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
49 2 0.05
50 33 0.82
51 2 0.05
52 3 0.08
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (50 bp):
AACGGTAAGCTCATTCGAGCTAAATATCGATAAGCTCATACGAGCTGAAT
Found at i:80846387 original size:10 final size:10
Alignment explanation
Indices: 80846372--80846431 Score: 104
Period size: 10 Copynumber: 6.0 Consensus size: 10
80846362 TAATTCTAGG
80846372 ATTTAT-TTT
1 ATTTATCTTT
80846381 CATTTATCTTT
1 -ATTTATCTTT
80846392 ATTTATCTTT
1 ATTTATCTTT
80846402 ATTTATCTTT
1 ATTTATCTTT
80846412 ATTTATCTTT
1 ATTTATCTTT
80846422 ATTTATCTTT
1 ATTTATCTTT
80846432 TAGAATTTCA
Statistics
Matches: 49, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
10 46 0.94
11 3 0.06
ACGTcount: A:0.20, C:0.10, G:0.00, T:0.70
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:80847186 original size:17 final size:19
Alignment explanation
Indices: 80847150--80847186 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
80847140 GTTTATTTTT
80847150 TCTATTTTAATTTCTGCAA
1 TCTATTTTAATTTCTGCAA
80847169 TCTA-TTTAATTT-TGCAA
1 TCTATTTTAATTTCTGCAA
80847186 T
1 T
80847187 TTCAATTCAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 6 0.33
18 8 0.44
19 4 0.22
ACGTcount: A:0.27, C:0.14, G:0.05, T:0.54
Consensus pattern (19 bp):
TCTATTTTAATTTCTGCAA
Found at i:80849060 original size:12 final size:12
Alignment explanation
Indices: 80849043--80849072 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
80849033 TGACACATGA
80849043 CCGTGTGCCAGG
1 CCGTGTGCCAGG
*
80849055 CCGTGTGCTAGG
1 CCGTGTGCCAGG
80849067 CCGTGT
1 CCGTGT
80849073 AACTCACTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.30, G:0.40, T:0.23
Consensus pattern (12 bp):
CCGTGTGCCAGG
Found at i:80852538 original size:46 final size:46
Alignment explanation
Indices: 80852470--80852606 Score: 166
Period size: 46 Copynumber: 3.0 Consensus size: 46
80852460 TATATATACA
* * * * * *
80852470 CATCTCGTACATATCTCACATTAGCCATTTGGCTTTACCACGTATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* * * *
80852516 CATCTCATACACGTTTTGCATTAGCCACTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
**
80852562 CATCTCATACACATTTCGCATTAGCCATTCGGCTTCGCCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
80852607 ATACACTTCC
Statistics
Matches: 75, Mismatches: 16, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
46 75 1.00
ACGTcount: A:0.23, C:0.32, G:0.11, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:80852651 original size:47 final size:46
Alignment explanation
Indices: 80852613--80852749 Score: 202
Period size: 47 Copynumber: 2.9 Consensus size: 46
80852603 ATATATACAC
* ** *
80852613 TTCCACGTTCATCACATTGGCCATTCTACCTTATCACATATATGCA
1 TTCCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCA
*
80852659 TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCA
1 T-TCCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCA
*
80852706 TGCTCACATTCATCACATTGGCCATTCGGCCTTATCACACATAT
1 TTC-CACATTCATCACATTGGCCATTCGGCCTTATCACACATAT
80852750 TCGGCCTTAT
Statistics
Matches: 82, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
46 1 0.01
47 81 0.99
ACGTcount: A:0.26, C:0.31, G:0.11, T:0.33
Consensus pattern (46 bp):
TTCCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCA
Found at i:80852753 original size:19 final size:19
Alignment explanation
Indices: 80852729--80852768 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
80852719 CACATTGGCC
80852729 ATTCGGCCTTATCACACAT
1 ATTCGGCCTTATCACACAT
80852748 ATTCGGCCTTATCACACAT
1 ATTCGGCCTTATCACACAT
80852767 AT
1 AT
80852769 GCATGTTCAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.33
Consensus pattern (19 bp):
ATTCGGCCTTATCACACAT
Found at i:80852759 original size:66 final size:66
Alignment explanation
Indices: 80852682--80852881 Score: 364
Period size: 66 Copynumber: 3.0 Consensus size: 66
80852672 CACATTGGCC
*
80852682 ATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACACA
1 ATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACA
80852747 T
66 T
80852748 ATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACA
1 ATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACA
80852813 T
66 T
* * *
80852814 ATTTGGCCTTATCATACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATA
1 ATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACA
80852879 T
66 T
80852880 AT
1 AT
80852882 GCATGCTCAC
Statistics
Matches: 130, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 130 1.00
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (66 bp):
ATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACA
T
Found at i:80852865 original size:113 final size:116
Alignment explanation
Indices: 80852620--80852903 Score: 340
Period size: 113 Copynumber: 2.5 Consensus size: 116
80852610 CACTTCCACG
**
80852620 TTCATCACATTGGCCATTCTACCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATT
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATT
* *
80852685 CGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCC
66 CGGCCTTATCACACATAT-CATGCTCACATTCATCACATTGGCCATTCGACA
* *
80852737 TT-ATCACA----CATATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCAT
1 TTCATCACATTGGC-CATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCAT
* * *
80852797 TCGGCCTTATCACACATAT-TTG-GC-CTTATCAT-ACATAT-G-CATGTTC-ACA
65 TCGGCCTTATCACACATATCATGCTCACAT-TCATCACAT-TGGCCA--TTCGACA
*
80852846 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATT
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATT
80852904 AAAATCCTAA
Statistics
Matches: 145, Mismatches: 12, Indels: 24
0.80 0.07 0.13
Matches are distributed among these distances:
108 2 0.01
109 10 0.07
110 15 0.10
111 2 0.01
112 1 0.01
113 106 0.73
114 1 0.01
116 6 0.04
117 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.33
Consensus pattern (116 bp):
TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATT
CGGCCTTATCACACATATCATGCTCACATTCATCACATTGGCCATTCGACA
Found at i:80858913 original size:70 final size:70
Alignment explanation
Indices: 80858769--80858927 Score: 201
Period size: 70 Copynumber: 2.3 Consensus size: 70
80858759 CGATTATTCG
* * * *
80858769 ACTAGCACTGGGTGCAAAACATTGTCAATTATTCGACTAGTGTTAGGCACACTATTCGACGGTTT
1 ACTAGCGCTGGGCGCAAAACATTGTCAATTATTCGACTAGTGCTAGGCACACTATTCGACGGTCT
**
80858834 ATCTG
66 ATCCA
* * * * **
80858839 ACTAGCGCTGGGCCCAAAACATTGTCAATTATTTGTCTAGTGCTGGGCACACTATTCGTTGGTCT
1 ACTAGCGCTGGGCGCAAAACATTGTCAATTATTCGACTAGTGCTAGGCACACTATTCGACGGTCT
80858904 ATCCA
66 ATCCA
*
80858909 ACTAGCGTTGGGCGCAAAA
1 ACTAGCGCTGGGCGCAAAA
80858928 AGATTATTAC
Statistics
Matches: 75, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
70 75 1.00
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.30
Consensus pattern (70 bp):
ACTAGCGCTGGGCGCAAAACATTGTCAATTATTCGACTAGTGCTAGGCACACTATTCGACGGTCT
ATCCA
Found at i:80861754 original size:39 final size:39
Alignment explanation
Indices: 80861708--80861808 Score: 148
Period size: 39 Copynumber: 2.6 Consensus size: 39
80861698 GCTCTCGTGA
* *
80861708 GCTTCAGTTAGCCTTCGGGCTTCCCTTTAGCATTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCCTTTAGCACTTATGT
**
80861747 GCTTCAGTTAGCCTTCGGGCTTCTGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCCTTTAGCACTTATGT
* *
80861786 GCTTCAATTAGACTTCGGGCTTC
1 GCTTCAGTTAGCCTTCGGGCTTC
80861809 AGATCATGAT
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 56 1.00
ACGTcount: A:0.13, C:0.25, G:0.23, T:0.40
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCGGGCTTCCCTTTAGCACTTATGT
Found at i:80865039 original size:2 final size:2
Alignment explanation
Indices: 80865032--80865059 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
80865022 AAGAAAGTAA
80865032 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
80865060 TAATTTACAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:80867412 original size:30 final size:31
Alignment explanation
Indices: 80867378--80867448 Score: 101
Period size: 31 Copynumber: 2.3 Consensus size: 31
80867368 AAAAGTTACA
80867378 ATTT-AGTCACTAAAC-TATTCAAAAGTTTTC
1 ATTTAAGTCACT-AACTTATTCAAAAGTTTTC
* *
80867408 ATTTAATTCACTGACTTATTCAAAAGTTTTC
1 ATTTAAGTCACTAACTTATTCAAAAGTTTTC
80867439 ATTTAAGTCA
1 ATTTAAGTCA
80867449 TTGGGCTGTT
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
30 6 0.17
31 30 0.83
ACGTcount: A:0.35, C:0.15, G:0.07, T:0.42
Consensus pattern (31 bp):
ATTTAAGTCACTAACTTATTCAAAAGTTTTC
Found at i:80869286 original size:16 final size:15
Alignment explanation
Indices: 80869267--80869313 Score: 60
Period size: 16 Copynumber: 3.1 Consensus size: 15
80869257 TAAATCATTC
80869267 TATTTATATTCTATTT
1 TATTTATATT-TATTT
*
80869283 TATTTATGTTTATTT
1 TATTTATATTTATTT
80869298 ATATTTA-ATTTATTT
1 -TATTTATATTTATTT
80869313 T
1 T
80869314 GTTCGCTAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
14 1 0.04
15 12 0.43
16 15 0.54
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70
Consensus pattern (15 bp):
TATTTATATTTATTT
Found at i:80869299 original size:26 final size:24
Alignment explanation
Indices: 80869267--80869316 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
80869257 TAAATCATTC
*
80869267 TATTTATATTCTATTTTATTTATGTT
1 TATTTATATT-TAATTTATTT-TGTT
80869293 TATTTATATTTAATTTATTTTGTT
1 TATTTATATTTAATTTATTTTGTT
80869317 CGCTAATGTG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 4 0.17
25 9 0.39
26 10 0.43
ACGTcount: A:0.24, C:0.02, G:0.04, T:0.70
Consensus pattern (24 bp):
TATTTATATTTAATTTATTTTGTT
Found at i:80869793 original size:79 final size:79
Alignment explanation
Indices: 80869698--80870019 Score: 364
Period size: 79 Copynumber: 4.1 Consensus size: 79
80869688 AATTAAAGGT
* * * * * * **
80869698 AAATAAAATCCGTTTCGAGAGTGATTCCCGCCGTTTAAAGATTTTATTCTAAATTTTGTTTTAAA
1 AAATAAAATCCATTTCGGGATTGATTCCCGCCGTTCAACGATTTTATTCCAAATTTTGTTTTATT
80869763 TCCAAAAACGAGTA
66 TCCAAAAACGAGTA
* * **
80869777 AAATAAAATCTATTTCGGGATTGATTTCCGCTATTCAACGATTTTATTCCAAATTTTGTTTTATT
1 AAATAAAATCCATTTCGGGATTGATTCCCGCCGTTCAACGATTTTATTCCAAATTTTGTTTTATT
80869842 TCCAAAAACGAGTA
66 TCCAAAAACGAGTA
* * * * * *
80869856 AAACACAATCCATTTTGGGATTGATTCTCGTCGTTCAACGATTTTAGTCCAAATTTTGTTTTATT
1 AAATAAAATCCATTTCGGGATTGATTCCCGCCGTTCAACGATTTTATTCCAAATTTTGTTTTATT
80869921 TCCAAAAACGAGTA
66 TCCAAAAACGAGTA
* * * * * * *
80869935 AAATAAAATCCGTTTTGGGATTGATTCTCGCAGTTCAACGAATTTATT--ACATTTTGATTTTGT
1 AAATAAAATCCATTTCGGGATTGATTCCCGCCGTTCAACGATTTTATTCCAAATTTTG-TTTTAT
* *
80869998 TGCCAAAAATGA-T-
65 TTCCAAAAACGAGTA
80870011 AAATAAAAT
1 AAATAAAAT
80870020 TAAATAAAAT
Statistics
Matches: 209, Mismatches: 33, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
76 9 0.04
77 8 0.04
78 15 0.07
79 177 0.85
ACGTcount: A:0.34, C:0.15, G:0.13, T:0.38
Consensus pattern (79 bp):
AAATAAAATCCATTTCGGGATTGATTCCCGCCGTTCAACGATTTTATTCCAAATTTTGTTTTATT
TCCAAAAACGAGTA
Found at i:80870233 original size:84 final size:84
Alignment explanation
Indices: 80870012--80870498 Score: 493
Period size: 84 Copynumber: 5.8 Consensus size: 84
80870002 AAAAATGATA
* * * * *
80870012 AATAAAATTAAATAAAATTTGTTTCGAGATTTATTCCCACTGTTTAATAAAGA-TTTATTTGATT
1 AATAGAATTAAATAAAATCTGTTTCGGGATTTATTCCCGCCGTTTAAT-AAGATTTTATTTGATT
*
80870076 TGATTTTGTTTCCAAAAATGAG
65 TGATTTTGTTTCC--AAATTAG
*** * *
80870098 AAATTA-AATTAAATAAAATCTGTTTTAAGATTTATTCCTGCCGTTTAATAAGATTTTATTTTAT
1 -AA-TAGAATTAAATAAAATCTGTTTCGGGATTTATTCCCGCCGTTTAATAAGATTTTATTTGAT
*
80870162 TTGGTTTTGTTTCCAAATTAG
64 TTGATTTTGTTTCCAAATTAG
* *
80870183 AATAGAATTAAATAAAATCTATTTCGGGATTTATTCCCGCCTTTTAATAAGATTTTATTTGATTT
1 AATAGAATTAAATAAAATCTGTTTCGGGATTTATTCCCGCCGTTTAATAAGATTTTATTTGATTT
* * *
80870248 TATTTTGTTTCTAAATTTG
66 GATTTTGTTTCCAAATTAG
* * *
80870267 AATTGAATTAAATAAAATCTGTTTCGGGATTTATTCCCGTCGTTTAATAAGATTTTATTTGCTTT
1 AATAGAATTAAATAAAATCTGTTTCGGGATTTATTCCCGCCGTTTAATAAGATTTTATTTGATTT
* * *
80870332 TATTTTGTTTCAAAATTTG
66 GATTTTGTTTCCAAATTAG
* * * * * * **
80870351 AATTGAATTAAATAAAATATGTTTGGGGATTTATTCCCGTCGTTGAATAATATTTTATTCAATAT
1 AATAGAATTAAATAAAATCTGTTTCGGGATTTATTCCCGCCGTTTAATAAGATTTTATTTGAT-T
* * **
80870416 TG-TTTTATTT-TAAAACA-
65 TGATTTTGTTTCCAAATTAG
* * * *
80870433 AAGACGTAATGAAAT-AATTCTGTTTCGGGATTTATTCCCGCCATTTAAT-AGATTTTAATTTGA
1 AATA-G-AATTAAATAAAATCTGTTTCGGGATTTATTCCCGCCGTTTAATAAGATTTT-ATTTGA
80870496 TTT
63 TTT
80870499 AATGATATAA
Statistics
Matches: 342, Mismatches: 51, Indels: 19
0.83 0.12 0.05
Matches are distributed among these distances:
82 10 0.03
83 39 0.11
84 218 0.64
85 8 0.02
86 4 0.01
87 61 0.18
88 2 0.01
ACGTcount: A:0.33, C:0.09, G:0.12, T:0.46
Consensus pattern (84 bp):
AATAGAATTAAATAAAATCTGTTTCGGGATTTATTCCCGCCGTTTAATAAGATTTTATTTGATTT
GATTTTGTTTCCAAATTAG
Found at i:80873470 original size:324 final size:324
Alignment explanation
Indices: 80872881--80873529 Score: 1280
Period size: 324 Copynumber: 2.0 Consensus size: 324
80872871 TGATGTAAAC
80872881 AGTGATTAAAAATGGGATAGGTTAAGTAATGCTTTTAATGACCATTGTGTGTTTCGGTGAGACGA
1 AGTGATTAAAAATGGGATAGGTTAAGTAATGCTTTTAATGACCATTGTGTGTTTCGGTGAGACGA
80872946 ACAACATAAATCACCTATGTGAGAGTGAAGTGGGGCTACTTCAAGGAGACTATTGGGGCATAGTT
66 ACAACATAAATCACCTATGTGAGAGTGAAGTGGGGCTACTTCAAGGAGACTATTGGGGCATAGTT
80873011 GTTTCAAACTTTTGCAAAACCAGGAGATGTTCCCAGTTATATGAACATAACCATAAGAACTAAAA
131 GTTTCAAACTTTTGCAAAACCAGGAGATGTTCCCAGTTATATGAACATAACCATAAGAACTAAAA
*
80873076 CCTTGCTAAGGAGGTAGTTGTGTAAAATATATTATCGTTTACACAAAAGGCAGAACAGTTAAAGG
196 CCTTGCTAAGGAGGTAGTTGTGTAAAATATATTATCGTTTACACAAAAGGCAAAACAGTTAAAGG
80873141 ACATCACGTCTACTGGTTAGCTAGTAAAGTAAATATACTGTCGCAAGGGAAGGATCAAGGGTGG
261 ACATCACGTCTACTGGTTAGCTAGTAAAGTAAATATACTGTCGCAAGGGAAGGATCAAGGGTGG
*
80873205 AGTGATTAAAAATGGGATAGGTTAAGTAATGCTTTTAATGACCATTGTGTGTTTCGGTGAGCCGA
1 AGTGATTAAAAATGGGATAGGTTAAGTAATGCTTTTAATGACCATTGTGTGTTTCGGTGAGACGA
80873270 ACAACATAAATCACCTATGTGAGAGTGAAGTGGGGCTACTTCAAGGAGACTATTGGGGCATAGTT
66 ACAACATAAATCACCTATGTGAGAGTGAAGTGGGGCTACTTCAAGGAGACTATTGGGGCATAGTT
80873335 GTTTCAAACTTTTGCAAAACCAGGAGATGTTCCCAGTTATATGAACATAACCATAAGAACTAAAA
131 GTTTCAAACTTTTGCAAAACCAGGAGATGTTCCCAGTTATATGAACATAACCATAAGAACTAAAA
80873400 CCTTGCTAAGGAGGTAGTTGTGTAAAATATATTATCGTTTACACAAAAGGCAAAACAGTTAAAGG
196 CCTTGCTAAGGAGGTAGTTGTGTAAAATATATTATCGTTTACACAAAAGGCAAAACAGTTAAAGG
80873465 ACATCACGTCTACTGGTTAGCTAGTAAAGTAAATATACTGTCGCAAGGGAAGGATCAAGGGTGG
261 ACATCACGTCTACTGGTTAGCTAGTAAAGTAAATATACTGTCGCAAGGGAAGGATCAAGGGTGG
80873529 A
1 A
80873530 TCCCTACCTA
Statistics
Matches: 323, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
324 323 1.00
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (324 bp):
AGTGATTAAAAATGGGATAGGTTAAGTAATGCTTTTAATGACCATTGTGTGTTTCGGTGAGACGA
ACAACATAAATCACCTATGTGAGAGTGAAGTGGGGCTACTTCAAGGAGACTATTGGGGCATAGTT
GTTTCAAACTTTTGCAAAACCAGGAGATGTTCCCAGTTATATGAACATAACCATAAGAACTAAAA
CCTTGCTAAGGAGGTAGTTGTGTAAAATATATTATCGTTTACACAAAAGGCAAAACAGTTAAAGG
ACATCACGTCTACTGGTTAGCTAGTAAAGTAAATATACTGTCGCAAGGGAAGGATCAAGGGTGG
Found at i:80874577 original size:16 final size:15
Alignment explanation
Indices: 80874558--80874610 Score: 54
Period size: 16 Copynumber: 3.5 Consensus size: 15
80874548 TAATTATAAA
80874558 TTATTTTATTTATGTT
1 TTATTTTATTTATG-T
* *
80874574 TTATTTCATATATGT
1 TTATTTTATTTATGT
*
80874589 TTATTTATATTTA-AT
1 TTATTT-TATTTATGT
80874604 TTATTTT
1 TTATTTT
80874611 GTTCGCTAAC
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
14 1 0.03
15 14 0.45
16 16 0.52
ACGTcount: A:0.25, C:0.02, G:0.04, T:0.70
Consensus pattern (15 bp):
TTATTTTATTTATGT
Found at i:80878098 original size:23 final size:23
Alignment explanation
Indices: 80878072--80878117 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
80878062 ACTTTTTAAG
**
80878072 AATAAAAGACTTATTTTGACATT
1 AATAAAAGACACATTTTGACATT
80878095 AATAAAAGACACATTTTGACATT
1 AATAAAAGACACATTTTGACATT
80878118 CTTGAATTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.46, C:0.11, G:0.09, T:0.35
Consensus pattern (23 bp):
AATAAAAGACACATTTTGACATT
Found at i:80883953 original size:14 final size:14
Alignment explanation
Indices: 80883934--80883961 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
80883924 CTACAACATG
80883934 TTAGGTATGAATAA
1 TTAGGTATGAATAA
80883948 TTAGGTATGAATAA
1 TTAGGTATGAATAA
80883962 GATATGAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.21, T:0.36
Consensus pattern (14 bp):
TTAGGTATGAATAA
Found at i:80891146 original size:46 final size:46
Alignment explanation
Indices: 80891093--80891268 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
80891083 TATTTGGGCA
*
80891093 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTCTGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
80891139 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
* * * *
80891186 TCTGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * *
80891232 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80891269 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
43 4 0.04
45 1 0.01
46 65 0.61
47 30 0.28
48 2 0.02
50 4 0.04
ACGTcount: A:0.19, C:0.21, G:0.31, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:80891248 original size:93 final size:93
Alignment explanation
Indices: 80891089--80891261 Score: 283
Period size: 93 Copynumber: 1.9 Consensus size: 93
80891079 GGGATATTTG
* * *
80891089 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTCTGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
80891154 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * * *
80891182 GGCATCTGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
80891247 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
80891262 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.19, C:0.21, G:0.31, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:80895438 original size:67 final size:64
Alignment explanation
Indices: 80895312--80895483 Score: 186
Period size: 67 Copynumber: 2.7 Consensus size: 64
80895302 TCTTTTGTAC
* * * * * * *
80895312 ACATGGTGAACACTTAGTACCACCCATGTGACCTAGC--CAGTTTATCTCGTAGCTCTCTTGTCT
1 ACATGGTGTATACATAGAACCACCCATGCGACCTAGCTACA-TATATCCCGTAGCTCTCTTGTCT
* * *
80895375 ACATGGTGTCCTTCACCTAGAACCACGCATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGT
1 ACATGGTGT--AT-ACATAGAACCACCCATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGT
80895440 CT
63 CT
* *
80895442 ACATGGTGTATACATAGTATCACCCATGCGACCTAGCTACAT
1 ACATGGTGTATACATAGAACCACCCATGCGACCTAGCTACAT
80895484 CATAATGTCT
Statistics
Matches: 90, Mismatches: 14, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
63 8 0.09
64 27 0.30
65 1 0.01
66 22 0.24
67 30 0.33
68 2 0.02
ACGTcount: A:0.24, C:0.30, G:0.17, T:0.29
Consensus pattern (64 bp):
ACATGGTGTATACATAGAACCACCCATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTCT
Found at i:80897311 original size:13 final size:13
Alignment explanation
Indices: 80897295--80897319 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
80897285 GTTCAACTAA
80897295 ATTAAAGAATTTG
1 ATTAAAGAATTTG
80897308 ATTAAAGAATTT
1 ATTAAAGAATTT
80897320 TCTTGAAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.12, T:0.40
Consensus pattern (13 bp):
ATTAAAGAATTTG
Found at i:80902038 original size:26 final size:26
Alignment explanation
Indices: 80901969--80902040 Score: 83
Period size: 26 Copynumber: 2.8 Consensus size: 26
80901959 ATTTTTTCAT
* * *
80901969 AATTTTGCCAAAGGCAAAATCGTCAA
1 AATTTTGCTAGAGGTAAAATCGTCAA
**
80901995 AATTTTATTAG-GGATAAAATCGTCAA
1 AATTTTGCTAGAGG-TAAAATCGTCAA
80902021 AATTTTGCTAGAGGTAAAAT
1 AATTTTGCTAGAGGTAAAAT
80902041 AGGGATGAGA
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
25 2 0.05
26 33 0.89
27 2 0.05
ACGTcount: A:0.42, C:0.11, G:0.17, T:0.31
Consensus pattern (26 bp):
AATTTTGCTAGAGGTAAAATCGTCAA
Found at i:80910222 original size:27 final size:27
Alignment explanation
Indices: 80910146--80910378 Score: 246
Period size: 27 Copynumber: 8.7 Consensus size: 27
80910136 TTTAGTTTAC
* *
80910146 TAAAATTACTGAAATACCC-CTAGTTG
1 TAAAATTACTGAAATACCCTCGATTTG
* *
80910172 TAAAATTAC-CAAAGTACTCC-CGATTTA
1 TAAAATTACTGAAA-TAC-CCTCGATTTG
*
80910199 TAAAATTA-TCGAAATACCGTCGA-TTG
1 TAAAATTACT-GAAATACCCTCGATTTG
*
80910225 TAAAATTACTGAAATACCCTCGACTTG
1 TAAAATTACTGAAATACCCTCGATTTG
* * * *
80910252 TAAAATTAC-CAAAGTACCCCCGGTTTA
1 TAAAATTACTGAAA-TACCCTCGATTTG
*
80910279 TAAAATTACTGAAATACCGTCGA-TTG
1 TAAAATTACTGAAATACCCTCGATTTG
*
80910305 TAAAATTACTGAAATACCCTCAATTTG
1 TAAAATTACTGAAATACCCTCGATTTG
*
80910332 TAAAATTACTGAAATACCCTCGATTTA
1 TAAAATTACTGAAATACCCTCGATTTG
* *
80910359 TAAAATTATTAAAATACCCT
1 TAAAATTACTGAAATACCCT
80910379 TGTAGGGAAG
Statistics
Matches: 173, Mismatches: 24, Indels: 19
0.80 0.11 0.09
Matches are distributed among these distances:
25 3 0.02
26 61 0.35
27 103 0.60
28 6 0.03
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (27 bp):
TAAAATTACTGAAATACCCTCGATTTG
Found at i:80910256 original size:53 final size:52
Alignment explanation
Indices: 80910141--80910366 Score: 226
Period size: 53 Copynumber: 4.2 Consensus size: 52
80910131 AATACTTTAG
* *
80910141 TTTACTAAAATTACTGAAATACCC-CTAGTTGTAAAATTAC-CAAAGTACTCC-CGA
1 TTTA-TAAAATTAC-GAAATACCCTCGA-TTGTAAAATTACTGAAA-TAC-CCTCGA
*
80910195 TTTATAAAATTATCGAAATACCGTCGATTGTAAAATTACTGAAATACCCTCGA
1 TTTATAAAATTA-CGAAATACCCTCGATTGTAAAATTACTGAAATACCCTCGA
* * * * * * *
80910248 CTTGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTACTGAAATACCGTCGA
1 TTTATAAAATTACGAAA-TACCCTC-GATTGTAAAATTACTGAAATACCCTCGA
* *
80910302 -TTGTAAAATTACTGAAATACCCTCAATTTGTAAAATTACTGAAATACCCTCGA
1 TTTATAAAATTAC-GAAATACCCTCGA-TTGTAAAATTACTGAAATACCCTCGA
80910355 TTTATAAAATTA
1 TTTATAAAATTA
80910367 TTAAAATACC
Statistics
Matches: 145, Mismatches: 18, Indels: 18
0.80 0.10 0.10
Matches are distributed among these distances:
52 6 0.04
53 91 0.63
54 48 0.33
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.31
Consensus pattern (52 bp):
TTTATAAAATTACGAAATACCCTCGATTGTAAAATTACTGAAATACCCTCGA
Found at i:80910264 original size:80 final size:79
Alignment explanation
Indices: 80910146--80910376 Score: 324
Period size: 80 Copynumber: 2.9 Consensus size: 79
80910136 TTTAGTTTAC
* *
80910146 TAAAATTACTGAAATACCC-CTAGTTGTAAAATTACCAAAGTACTCCCGATTTATAAAATTATCG
1 TAAAATTACTGAAATACCCTCAACTTGTAAAATTACCAAAGTAC-CCCGATTTATAAAATTATCG
80910210 AAATACCGTCGATTG
65 AAATACCGTCGATTG
* *
80910225 TAAAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTA-CT
1 TAAAATTACTGAAATACCCTCAACTTGTAAAATTACCAAAGTA-CCCCGATTTATAAAATTATC-
80910289 GAAATACCGTCGATTG
64 GAAATACCGTCGATTG
* * *
80910305 TAAAATTACTGAAATACCCTCAATTTGTAAAATTACTGAAA-TACCCTCGATTTATAAAATTATT
1 TAAAATTACTGAAATACCCTCAACTTGTAAAATTAC-CAAAGTACCC-CGATTTATAAAATTATC
*
80910369 AAAATACC
64 GAAATACC
80910377 CTTGTAGGGA
Statistics
Matches: 137, Mismatches: 9, Indels: 11
0.87 0.06 0.07
Matches are distributed among these distances:
79 23 0.17
80 110 0.80
81 4 0.03
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (79 bp):
TAAAATTACTGAAATACCCTCAACTTGTAAAATTACCAAAGTACCCCGATTTATAAAATTATCGA
AATACCGTCGATTG
Found at i:80910392 original size:27 final size:27
Alignment explanation
Indices: 80910370--80910684 Score: 407
Period size: 27 Copynumber: 11.7 Consensus size: 27
80910360 AAAATTATTA
* * * *
80910370 AAATACCCTTGTAGGGAAGAATTATTA
1 AAATACCCCTGTAGGGTAGAATTACTG
* * *
80910397 AAATACCACTATAGAGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACTG
** * *
80910424 AAATACCGTTGTAGGGTAGAAATACCG
1 AAATACCCCTGTAGGGTAGAATTACTG
*
80910451 AAATACCCCTGTAGGGTAGAATTACTA
1 AAATACCCCTGTAGGGTAGAATTACTG
*
80910478 AAATACCCCTGTAGGGTAGAAATA-TCG
1 AAATACCCCTGTAGGGTAGAATTACT-G
* *
80910505 AAATACCCCTGTAGGGTAAAATTACTA
1 AAATACCCCTGTAGGGTAGAATTACTG
80910532 AAATACCCCTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACTG
*
80910559 AAATACCCATGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACTG
* *
80910586 AAATACCCCTGTAAGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACTG
*
80910613 AAATAACCCTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACTG
*
80910640 AAATACCCCTGTAGGGTAAAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACTG
* * *
80910667 AGATACCCTTGTGGGGTA
1 AAATACCCCTGTAGGGTA
80910685 AAACTACCAT
Statistics
Matches: 249, Mismatches: 37, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
26 1 0.00
27 247 0.99
28 1 0.00
ACGTcount: A:0.37, C:0.17, G:0.21, T:0.25
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACTG
Found at i:80910685 original size:27 final size:27
Alignment explanation
Indices: 80910279--80910687 Score: 361
Period size: 27 Copynumber: 15.2 Consensus size: 27
80910269 CCCCGGTTTA
* **
80910279 TAAAATTACTGAAATA-CCGTCG-ATTG
1 TAAAATTACTGAAATACCCCT-GTAGGG
** **
80910305 TAAAATTACTGAAATA-CCCTCAATTTG
1 TAAAATTACTGAAATACCCCTGTA-GGG
*
80910332 TAAAATTACTGAAATACCCTCGATTTA---
1 TAAAATTACTGAAATACCC-C--TGTAGGG
* * *
80910359 TAAAATTATTAAAATACCCTTGTAGGG
1 TAAAATTACTGAAATACCCCTGTAGGG
* * * * *
80910386 -AAGAATTATTAAAATACCACTATAGAG
1 TAA-AATTACTGAAATACCCCTGTAGGG
* **
80910413 TAGAATTACTGAAATACCGTTGTAGGG
1 TAAAATTACTGAAATACCCCTGTAGGG
*
80910440 TAGAAA-TACCGAAATACCCCTGTAGGG
1 TA-AAATTACTGAAATACCCCTGTAGGG
* *
80910467 TAGAATTACTAAAATACCCCTGTAGGG
1 TAAAATTACTGAAATACCCCTGTAGGG
80910494 TAGAAA-TA-TCGAAATACCCCTGTAGGG
1 TA-AAATTACT-GAAATACCCCTGTAGGG
*
80910521 TAAAATTACTAAAATACCCCTGTAGGG
1 TAAAATTACTGAAATACCCCTGTAGGG
* *
80910548 TAGAATTACTGAAATACCCATGTAGGG
1 TAAAATTACTGAAATACCCCTGTAGGG
* *
80910575 TAGAATTACTGAAATACCCCTGTAAGG
1 TAAAATTACTGAAATACCCCTGTAGGG
* * *
80910602 TAGAATTACCGAAATAACCCTGTAGGG
1 TAAAATTACTGAAATACCCCTGTAGGG
*
80910629 TAGAATTACTGAAATACCCCTGTAGGG
1 TAAAATTACTGAAATACCCCTGTAGGG
* * *
80910656 TAAAATTACTGAGATACCCTTGTGGGG
1 TAAAATTACTGAAATACCCCTGTAGGG
80910683 TAAAA
1 TAAAA
80910688 CTACCATTTT
Statistics
Matches: 323, Mismatches: 43, Indels: 33
0.81 0.11 0.08
Matches are distributed among these distances:
24 3 0.01
26 28 0.09
27 281 0.87
28 8 0.02
29 1 0.00
31 2 0.01
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.27
Consensus pattern (27 bp):
TAAAATTACTGAAATACCCCTGTAGGG
Found at i:80911171 original size:22 final size:22
Alignment explanation
Indices: 80911119--80911183 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
80911109 TTAAAGCCTT
* *
80911119 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
80911141 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
80911163 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
80911184 ACGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:80911372 original size:27 final size:26
Alignment explanation
Indices: 80911342--80911425 Score: 78
Period size: 27 Copynumber: 3.1 Consensus size: 26
80911332 ATTCTGTTAA
* * *
80911342 GTGGCTTTGCCATATTATCTCTTTCTG
1 GTGGCTATGCCAAAATATCT-TTTCTG
*
80911369 GTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTATGCCA-AAATATCTTTTCTG
* * *
80911396 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTATGCCAAAATATCT-TTTCTG
80911423 GTG
1 GTG
80911426 ACTCTGTCAT
Statistics
Matches: 47, Mismatches: 8, Indels: 4
0.80 0.14 0.07
Matches are distributed among these distances:
26 7 0.15
27 34 0.72
28 6 0.13
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.38
Consensus pattern (26 bp):
GTGGCTATGCCAAAATATCTTTTCTG
Found at i:80911430 original size:27 final size:26
Alignment explanation
Indices: 80911364--80911443 Score: 106
Period size: 27 Copynumber: 3.0 Consensus size: 26
80911354 TATTATCTCT
*
80911364 TTCTGGTGGCTATGCCACAAATATCTG
1 TTCTGGTGGCTCTGCCAC-AATATCTG
80911391 TTCTGGTGGCTCTGCCACAATATCTG
1 TTCTGGTGGCTCTGCCACAATATCTG
* * *
80911417 TATCTGGTGACTCTGTCATAATATCTG
1 T-TCTGGTGGCTCTGCCACAATATCTG
80911444 ATAACTGAGC
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 9 0.19
27 39 0.81
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (26 bp):
TTCTGGTGGCTCTGCCACAATATCTG
Found at i:80911618 original size:6 final size:6
Alignment explanation
Indices: 80911603--80911668 Score: 64
Period size: 6 Copynumber: 10.8 Consensus size: 6
80911593 ATTCTGTTAC
* * *
80911603 CTGATA CTGATT CTGATT CTGATT CTG-TCAC CTAATT CTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGAT--T CTGATT CTGATT CTGATT
80911652 CTGATT CT-AGTT CTGAT
1 CTGATT CTGA-TT CTGAT
80911669 AATGTTTCTT
Statistics
Matches: 50, Mismatches: 5, Indels: 10
0.77 0.08 0.15
Matches are distributed among these distances:
5 2 0.04
6 44 0.88
7 3 0.06
8 1 0.02
ACGTcount: A:0.20, C:0.20, G:0.15, T:0.45
Consensus pattern (6 bp):
CTGATT
Found at i:80911644 original size:31 final size:31
Alignment explanation
Indices: 80911593--80911659 Score: 107
Period size: 31 Copynumber: 2.2 Consensus size: 31
80911583 CTGATTTTTT
* *
80911593 ATTCTGTTACCTGATACTGATTCTGATTCTG
1 ATTCTGTCACCTAATACTGATTCTGATTCTG
*
80911624 ATTCTGTCACCTAATTCTGATTCTGATTCTG
1 ATTCTGTCACCTAATACTGATTCTGATTCTG
80911655 ATTCT
1 ATTCT
80911660 AGTTCTGATA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.19, C:0.21, G:0.13, T:0.46
Consensus pattern (31 bp):
ATTCTGTCACCTAATACTGATTCTGATTCTG
Found at i:80913733 original size:80 final size:79
Alignment explanation
Indices: 80913615--80913873 Score: 319
Period size: 80 Copynumber: 3.3 Consensus size: 79
80913605 TTTAGTTTAC
* *
80913615 TAAAATTACTGAAATA-CCTCCAATTGTAAAATTACCAAAGTACCCCCGATTTATAAAATTACCA
1 TAAAATTACTGAAATACCCT-CATTTGTAAAATTACCAAAGTACCCCCGATTTATAAAATTACCG
80913679 AAATACCATCGATTG
65 AAATACCATCGATTG
* *
80913694 TAAAATTACTGAAATACCCTCGTCTTGTAAAATTACCAAAGTACCCCTGATTTATAAAATTACCG
1 TAAAATTACTGAAATACCCTCAT-TTGTAAAATTACCAAAGTACCCCCGATTTATAAAATTACCG
*
80913759 AAATACCGTCGATTG
65 AAATACCATCGATTG
* * **
80913774 TAAAATTACTGAAATACCCTTAATTTGTAAAATTACCGAAA-TACCCTC-AGTTT-GCAAATTAC
1 TAAAATTACTGAAATACCC-TCATTTGTAAAATTACC-AAAGTACCCCCGA-TTTATAAAATTAC
* * *
80913836 TGAAATACCCTCGATTTA
63 CGAAATACCATCGA-TTG
*
80913854 TAAAATTATTGAAATACCCT
1 TAAAATTACTGAAATACCCT
80913874 TGTAGGGTAG
Statistics
Matches: 159, Mismatches: 15, Indels: 12
0.85 0.08 0.06
Matches are distributed among these distances:
79 38 0.24
80 116 0.73
81 5 0.03
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (79 bp):
TAAAATTACTGAAATACCCTCATTTGTAAAATTACCAAAGTACCCCCGATTTATAAAATTACCGA
AATACCATCGATTG
Found at i:80913833 original size:53 final size:53
Alignment explanation
Indices: 80913615--80913873 Score: 240
Period size: 53 Copynumber: 4.9 Consensus size: 53
80913605 TTTAGTTTAC
** * * * *
80913615 TAAAATTACTGAAATA-CCTCCAATTGTAAAATTACC-AAAGTACCCCCGATTTA
1 TAAAATTACTGAAATACCCTTGATTTATAAAATTACCGAAA-TACCCTCG-TTTG
** * * * *
80913668 TAAAATTACCAAAATACCATCGA-TTGTAAAATTACTGAAATACCCTCGTCTTG
1 TAAAATTACTGAAATACCCTTGATTTATAAAATTACCGAAATACCCTCGT-TTG
* * * *
80913721 TAAAATTAC-CAAAGTACCCCTGATTTATAAAATTACCGAAATACCGTCGATTG
1 TAAAATTACTGAAA-TACCCTTGATTTATAAAATTACCGAAATACCCTCGTTTG
* *
80913774 TAAAATTACTGAAATACCCTTAATTTGTAAAATTACCGAAATACCCTCAGTTTG
1 TAAAATTACTGAAATACCCTTGATTTATAAAATTACCGAAATACCCTC-GTTTG
* * **
80913828 -CAAATTACTGAAATACCCTCGATTTATAAAATTATTGAAATACCCT
1 TAAAATTACTGAAATACCCTTGATTTATAAAATTACCGAAATACCCT
80913874 TGTAGGGTAG
Statistics
Matches: 172, Mismatches: 27, Indels: 14
0.81 0.13 0.07
Matches are distributed among these distances:
52 4 0.02
53 132 0.77
54 36 0.21
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (53 bp):
TAAAATTACTGAAATACCCTTGATTTATAAAATTACCGAAATACCCTCGTTTG
Found at i:80913867 original size:27 final size:27
Alignment explanation
Indices: 80913615--80913873 Score: 248
Period size: 27 Copynumber: 9.7 Consensus size: 27
80913605 TTTAGTTTAC
* * *
80913615 TAAAATTACTGAAATA-CCTCCAATTG
1 TAAAATTACCGAAATACCCTCGATTTG
* *
80913641 TAAAATTACC-AAAGTACCCCCGATTTA
1 TAAAATTACCGAAA-TACCCTCGATTTG
* *
80913668 TAAAATTACCAAAATACCATCGA-TTG
1 TAAAATTACCGAAATACCCTCGATTTG
*
80913694 TAAAATTACTGAAATACCCTCG-TCTTG
1 TAAAATTACCGAAATACCCTCGAT-TTG
*
80913721 TAAAATTACC-AAAGTACCC-CTGATTTA
1 TAAAATTACCGAAA-TACCCTC-GATTTG
*
80913748 TAAAATTACCGAAATACCGTCGA-TTG
1 TAAAATTACCGAAATACCCTCGATTTG
* **
80913774 TAAAATTACTGAAATACCCTTAATTTG
1 TAAAATTACCGAAATACCCTCGATTTG
80913801 TAAAATTACCGAAATACCCTC-AGTTTG
1 TAAAATTACCGAAATACCCTCGA-TTTG
* * *
80913828 -CAAATTACTGAAATACCCTCGATTTA
1 TAAAATTACCGAAATACCCTCGATTTG
**
80913854 TAAAATTATTGAAATACCCT
1 TAAAATTACCGAAATACCCT
80913874 TGTAGGGTAG
Statistics
Matches: 193, Mismatches: 26, Indels: 27
0.78 0.11 0.11
Matches are distributed among these distances:
25 3 0.02
26 79 0.41
27 103 0.53
28 8 0.04
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
TAAAATTACCGAAATACCCTCGATTTG
Found at i:80913887 original size:27 final size:27
Alignment explanation
Indices: 80913857--80914179 Score: 387
Period size: 27 Copynumber: 12.0 Consensus size: 27
80913847 CGATTTATAA
* *
80913857 AATTATTGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * *
80913884 AATTATTAAAATACCACTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
** *
80913911 AATTA-TCGAAATACCGTTGTAAGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
* * * *
80913938 AAATACCGAAATACCCCTATAGAGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
80913965 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
80913992 AATTACTGAAATACCCCTGCAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
80914019 AAATACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
80914046 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
80914073 AATTACTGAAATACCCCTGTAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
80914100 AATTACCGAAATAACCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
80914127 AATTACTAAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * *
80914154 AATTACCGAGATACCCTTGTGGGGTA
1 AATTACTGAAATACCCCTGTAGGGTA
80914180 AAACTACTAT
Statistics
Matches: 250, Mismatches: 44, Indels: 4
0.84 0.15 0.01
Matches are distributed among these distances:
26 1 0.00
27 249 1.00
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.26
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:80913965 original size:81 final size:81
Alignment explanation
Indices: 80913864--80914169 Score: 461
Period size: 81 Copynumber: 3.8 Consensus size: 81
80913854 TAAAATTATT
* * * **
80913864 GAAATACCCTTGTAGGGTAGAATTATTAAAATACCACTATAGGGTAGAATTA-TCGAAATACCGT
1 GAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTATAGGGTAGAATTACT-GAAATACCCC
80913928 TGTAAGGTAGAAATACC
65 TGTAAGGTAGAAATACC
* * *
80913945 GAAATACCCCTATAGAGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCT
1 GAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTATAGGGTAGAATTACTGAAATACCCCT
* *
80914010 GCAAGGTAGAAATACT
66 GTAAGGTAGAAATACC
*
80914026 GAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTATAGGGTAGAATTACTGAAATACCCCT
1 GAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTATAGGGTAGAATTACTGAAATACCCCT
*
80914091 GTAAGGTAGAATTACC
66 GTAAGGTAGAAATACC
* * *
80914107 GAAATAACCCTGTAGGGTAGAATTACTAAAATACCCCTATAGGGTAGAATTACCGAGATACCC
1 GAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTATAGGGTAGAATTACTGAAATACCC
80914170 TTGTGGGGTA
Statistics
Matches: 203, Mismatches: 21, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
81 202 1.00
82 1 0.00
ACGTcount: A:0.38, C:0.18, G:0.19, T:0.25
Consensus pattern (81 bp):
GAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTATAGGGTAGAATTACTGAAATACCCCT
GTAAGGTAGAAATACC
Found at i:80914666 original size:22 final size:22
Alignment explanation
Indices: 80914614--80914667 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
80914604 TTAAAGCCTT
* *
80914614 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
80914636 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
80914658 CTGATTATGG
1 CTGATTATGG
80914668 TTGTGTGCGA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
21 1 0.04
22 24 0.92
23 1 0.04
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.35
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Done.