Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 234 of 295
Found at i:80914674 original size:22 final size:21
Alignment explanation
Indices: 80914614--80914675 Score: 54
Period size: 22 Copynumber: 2.8 Consensus size: 21
80914604 TTAAAGCCTT
*
80914614 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGG-TTTGTGCCAAC
* *
80914636 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGG-TTTGTGCCAAC
80914658 CTGATTATGGTTGTGTGC
1 CTGATTATGGTT-TGTGC
80914676 GAAACGTATT
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
21 2 0.06
22 29 0.91
23 1 0.03
ACGTcount: A:0.18, C:0.21, G:0.24, T:0.37
Consensus pattern (21 bp):
CTGATTATGGTTTGTGCCAAC
Found at i:80914841 original size:27 final size:26
Alignment explanation
Indices: 80914811--80914911 Score: 103
Period size: 27 Copynumber: 3.8 Consensus size: 26
80914801 AAGTTATTGA
* * * *
80914811 TGGCTTTGCCACATTATCTCTTTTTGG
1 TGGCTATGCCACAATATCT-GTTCTGG
80914838 TGGCTATGCCACAAATATCTGTTCTGG
1 TGGCTATGCCAC-AATATCTGTTCTGG
*
80914865 TGGCTCTGCCACAATATCTGTATCTGG
1 TGGCTATGCCACAATATCTGT-TCTGG
* * *
80914892 TGACTCTGTCACAATATCTG
1 TGGCTATGCCACAATATCTG
80914912 ATAACTGAGC
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
26 9 0.14
27 50 0.77
28 6 0.09
ACGTcount: A:0.19, C:0.24, G:0.20, T:0.38
Consensus pattern (26 bp):
TGGCTATGCCACAATATCTGTTCTGG
Found at i:80915086 original size:6 final size:6
Alignment explanation
Indices: 80915048--80915136 Score: 67
Period size: 6 Copynumber: 14.3 Consensus size: 6
80915038 TTGTATTCAC
* *
80915048 ATTCTG ATTTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
80915098 -TCACCTA ATTCTG ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
80915137 AATGTTTCTT
Statistics
Matches: 66, Mismatches: 8, Indels: 18
0.72 0.09 0.20
Matches are distributed among these distances:
5 4 0.06
6 49 0.74
7 11 0.17
8 2 0.03
ACGTcount: A:0.19, C:0.18, G:0.15, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:80915097 original size:31 final size:31
Alignment explanation
Indices: 80915048--80915152 Score: 115
Period size: 31 Copynumber: 3.4 Consensus size: 31
80915038 TTGTATTCAC
*
80915048 ATTCTGATTTTTGATTCTGTTACCTGATACTG
1 ATTCTGA-TTCTGATTCTGTTACCTGATACTG
* * *
80915080 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
*
80915111 ATTCTGATTCTGATTCTAGTT--CTGATAATG
1 ATTCTGATTCTGATTCT-GTTACCTGATACTG
* *
80915141 TTTCTTATTCTG
1 ATTCTGATTCTG
80915153 GAATGGGTTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
30 16 0.26
31 37 0.60
32 9 0.15
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.50
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACCTGATACTG
Found at i:80918059 original size:17 final size:17
Alignment explanation
Indices: 80918039--80918071 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
80918029 ATTAAAAAAT
80918039 ATTTTTTATAATTTTTA
1 ATTTTTTATAATTTTTA
80918056 ATTTTTTATAATTTTT
1 ATTTTTTATAATTTTT
80918072 TTGAATTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (17 bp):
ATTTTTTATAATTTTTA
Found at i:80919013 original size:25 final size:25
Alignment explanation
Indices: 80918966--80919021 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 25
80918956 TACATTTTCT
*
80918966 ATTATTTATATAAAAAGTCTCAA-A
1 ATTATTTATATAAAAAGTATCAATA
*
80918990 ATCTATTTA-ATAAAATTGTATCAATA
1 AT-TATTTATATAAAA-AGTATCAATA
80919016 ATTATT
1 ATTATT
80919022 ATTTTTTAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
24 8 0.30
25 16 0.59
26 3 0.11
ACGTcount: A:0.46, C:0.07, G:0.04, T:0.43
Consensus pattern (25 bp):
ATTATTTATATAAAAAGTATCAATA
Found at i:80919791 original size:77 final size:76
Alignment explanation
Indices: 80919692--80919846 Score: 204
Period size: 77 Copynumber: 2.0 Consensus size: 76
80919682 CTTTTTAACT
* * ** *
80919692 AAATAATGAAGAAATTATCACTTATTTATAAGATAAATTTGAG-ATATAGAAGTGTTCTCTGGTC
1 AAATAATGAAGAAATTAACACTTATTTATAAGATAAATATGAGCATAT-G-AGCATTCTCTGGAC
80919756 AATGAAGGATTAA
64 AATGAAGGATTAA
* *
80919769 AAATAATGAATAAATTAACACTTATTTATAAGGTAAATATGAGCATATGAGCATTCTCTGGACAA
1 AAATAATGAAGAAATTAACACTTATTTATAAGATAAATATGAGCATATGAGCATTCTCTGGACAA
**
80919834 TGTGGGATTAA
66 TGAAGGATTAA
80919845 AA
1 AA
80919847 TTAACTTTTT
Statistics
Matches: 68, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
76 24 0.35
77 40 0.59
78 4 0.06
ACGTcount: A:0.43, C:0.08, G:0.17, T:0.32
Consensus pattern (76 bp):
AAATAATGAAGAAATTAACACTTATTTATAAGATAAATATGAGCATATGAGCATTCTCTGGACAA
TGAAGGATTAA
Found at i:80920028 original size:93 final size:92
Alignment explanation
Indices: 80919902--80920149 Score: 286
Period size: 93 Copynumber: 2.7 Consensus size: 92
80919892 AGAAGTGAAC
* * * * *
80919902 TATGAAAATATTTTCTAGTCAATGTGGGTTTAAAATTAGCTTTTTAATGAAAATAGAGAAGAAAT
1 TATGAAAGTATTCTCTAGTCAATGTGAGATTAAAATTA-CTTTTTAATGAAAATAGTGAAGAAAT
*
80919967 TGTCACTTATTTATAAG-GTAAATGT-AG
65 TGACACTTATTTAT-AGCGTAAATGTGAG
* * *
80919994 ATATGAAAGTATTCTCTAATCAATGTGAGATTAAAATTATCGTTTTAATGAAAATAGTGAAGAAT
1 -TATGAAAGTATTCTCTAGTCAATGTGAGATTAAAATTA-CTTTTTAATGAAAATAGTGAAGAAA
*
80920059 TTGACACTTATTTATAGCGTAAGTGTGAG
64 TTGACACTTATTTATAGCGTAAATGTGAG
* * * * * *
80920088 TAT-AGGAGTGTTCTCTAGCCAATGTGAGATTAAAATTAATTTTTAATAAAAATTGTGAAGAA
1 TATGA-AAGTATTCTCTAGTCAATGTGAGATTAAAATTACTTTTTAATGAAAATAGTGAAGAA
80920150 GTGAGCTACG
Statistics
Matches: 133, Mismatches: 19, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
92 23 0.17
93 108 0.81
94 2 0.02
ACGTcount: A:0.39, C:0.06, G:0.18, T:0.37
Consensus pattern (92 bp):
TATGAAAGTATTCTCTAGTCAATGTGAGATTAAAATTACTTTTTAATGAAAATAGTGAAGAAATT
GACACTTATTTATAGCGTAAATGTGAG
Found at i:80920615 original size:20 final size:20
Alignment explanation
Indices: 80920590--80920628 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
80920580 ATTCTTTAGG
80920590 TAATCTGGGATTAAAATTAT
1 TAATCTGGGATTAAAATTAT
80920610 TAATCTGGGATTAAAATTA
1 TAATCTGGGATTAAAATTA
80920629 ACTTAATTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.41, C:0.05, G:0.15, T:0.38
Consensus pattern (20 bp):
TAATCTGGGATTAAAATTAT
Found at i:80922284 original size:17 final size:17
Alignment explanation
Indices: 80922255--80922287 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
80922245 AAAAAACTTC
80922255 TTTTAGAAGTTTCAAAA
1 TTTTAGAAGTTTCAAAA
80922272 TTTTA-AAGCTTTCAAA
1 TTTTAGAAG-TTTCAAA
80922288 GGAAACTACA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.39, C:0.09, G:0.09, T:0.42
Consensus pattern (17 bp):
TTTTAGAAGTTTCAAAA
Found at i:80927797 original size:15 final size:15
Alignment explanation
Indices: 80927777--80927812 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
80927767 TATGGCTTGT
80927777 AAAACTGATTTGATA
1 AAAACTGATTTGATA
80927792 AAAACTGATTTGATA
1 AAAACTGATTTGATA
80927807 AAAACT
1 AAAACT
80927813 TCTTTTCCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.50, C:0.08, G:0.11, T:0.31
Consensus pattern (15 bp):
AAAACTGATTTGATA
Found at i:80928373 original size:35 final size:37
Alignment explanation
Indices: 80928302--80928399 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 37
80928292 ATAATCTTCA
80928302 ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
1 ATGATA-GCAATCTTAGATATGATATGCAATCTTAGAT
80928340 ATGATA-CAATCTTAGATATGAT-TGCAATCTTAGAT
1 ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
80928375 ATGATATGCAATCTTAGA-A-GATATG
1 ATGATA-GCAATCTTAGATATGATATG
80928400 ATTTTGTAAT
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
35 22 0.39
36 19 0.33
37 10 0.18
38 6 0.11
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (37 bp):
ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
Found at i:80928399 original size:17 final size:19
Alignment explanation
Indices: 80928302--80928392 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
80928292 ATAATCTTCA
80928302 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
80928321 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
80928340 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
80928357 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
80928375 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
80928393 AGATATGATT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:80928418 original size:22 final size:22
Alignment explanation
Indices: 80928302--80928415 Score: 96
Period size: 19 Copynumber: 5.8 Consensus size: 22
80928292 ATAATCTTCA
80928302 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
80928321 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
80928340 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
80928357 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
80928375 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
80928397 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
80928416 GATTTAATTT
Statistics
Matches: 86, Mismatches: 2, Indels: 10
0.88 0.02 0.10
Matches are distributed among these distances:
17 16 0.19
18 16 0.19
19 34 0.40
22 8 0.09
23 12 0.14
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:80928707 original size:18 final size:17
Alignment explanation
Indices: 80928684--80928717 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
80928674 TTTCCCTAAT
*
80928684 TTTTTTTATATATTTTAA
1 TTTTTTAATA-ATTTTAA
80928702 TTTTTTAATAATTTTA
1 TTTTTTAATAATTTTA
80928718 GTATCATATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTTTTAATAATTTTAA
Found at i:80937936 original size:43 final size:44
Alignment explanation
Indices: 80937863--80937967 Score: 160
Period size: 43 Copynumber: 2.4 Consensus size: 44
80937853 GAATTCAGGG
* * *
80937863 TGAAAATCTGCAAAGGGCGCCTTGTAACCAAAGGGGTTTTGAGT
1 TGAAAACCCGCAAAGGGCACCTTGTAACCAAAGGGGTTTTGAGT
*
80937907 T-AAAACCCGCAAAGGGCACCTTGTGACCAAAGGGGTTTTGAGT
1 TGAAAACCCGCAAAGGGCACCTTGTAACCAAAGGGGTTTTGAGT
80937950 TGAAAACCCG-AAAGGGCA
1 TGAAAACCCGCAAAGGGCA
80937968 GCTCAAATTT
Statistics
Matches: 56, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
43 47 0.84
44 9 0.16
ACGTcount: A:0.32, C:0.19, G:0.29, T:0.20
Consensus pattern (44 bp):
TGAAAACCCGCAAAGGGCACCTTGTAACCAAAGGGGTTTTGAGT
Found at i:80938375 original size:263 final size:263
Alignment explanation
Indices: 80937908--80938392 Score: 873
Period size: 263 Copynumber: 1.8 Consensus size: 263
80937898 GTTTTGAGTT
*
80937908 AAAACCCGCAAAGGGCACCTTGTGACCAAAGGGGTTTTGAGTTGAAAACCCGAAAGGGCAGCTCA
1 AAAACCCGCAAAGGGCACCTTGTGACCAAAGGGGTTTTGAGTTGAAAACCCGAAAAGGCAGCTCA
* *
80937973 AATTTTGAAGAGCACACGGTAATCTTGCTATATCTGATTTAACAAAAAGTGAAGCGCGTTGCATA
66 AATTTTGAAGAGCACACGGTAATCTTGCTATATCTGATTCAACAAAAAGTGAAGCGCGTTACATA
80938038 TTGGGGCATCAACAAAGTACTTGGAATCTTTTAAACACATGTTGAATTCAAGAAAGTCTTCATGG
131 TTGGGGCATCAACAAAGTACTTGGAATCTTTTAAACACATGTTGAATTCAAGAAAGTCTTCATGG
80938103 AGCTGGCATATAAACGCTCAAGAGGCGGGCGCCTTGAGTTTTAAAAAAAAAATAGAGAGGCCAAG
196 AGCTGGCATATAAACGCTCAAGAGGCGGGCGCCTTGAGTTTTAAAAAAAAAATAGAGAGGCCAAG
80938168 GTG
261 GTG
* *
80938171 AAAACCCGCAAAGGGCGCCTTGTGACCAAAGGGGTTTTGAGTTGAAAACGCGAAAAGGCAGCTCA
1 AAAACCCGCAAAGGGCACCTTGTGACCAAAGGGGTTTTGAGTTGAAAACCCGAAAAGGCAGCTCA
* *
80938236 AATTTTGAAGTGCACACGGTAATCTTGCTATATCTGATTCAACAAAGAGTGAAGCGCGTTACATA
66 AATTTTGAAGAGCACACGGTAATCTTGCTATATCTGATTCAACAAAAAGTGAAGCGCGTTACATA
*
80938301 TTGGGGCATCAACAAAGTACTTTGG-ATCTTTTAAACATATGTTGAATTCAAGAAAGTCTTCATG
131 TTGGGGCATCAACAAAGTAC-TTGGAATCTTTTAAACACATGTTGAATTCAAGAAAGTCTTCATG
*
80938365 GAGCTGGCATATAAACGCTCAAGCGGCG
195 GAGCTGGCATATAAACGCTCAAGAGGCG
80938393 ATATCTAGGG
Statistics
Matches: 212, Mismatches: 9, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
263 208 0.98
264 4 0.02
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.24
Consensus pattern (263 bp):
AAAACCCGCAAAGGGCACCTTGTGACCAAAGGGGTTTTGAGTTGAAAACCCGAAAAGGCAGCTCA
AATTTTGAAGAGCACACGGTAATCTTGCTATATCTGATTCAACAAAAAGTGAAGCGCGTTACATA
TTGGGGCATCAACAAAGTACTTGGAATCTTTTAAACACATGTTGAATTCAAGAAAGTCTTCATGG
AGCTGGCATATAAACGCTCAAGAGGCGGGCGCCTTGAGTTTTAAAAAAAAAATAGAGAGGCCAAG
GTG
Found at i:80939296 original size:78 final size:78
Alignment explanation
Indices: 80939167--80939522 Score: 525
Period size: 78 Copynumber: 4.5 Consensus size: 78
80939157 CAAAGAAACA
* ** * *
80939167 GATTTGGCATTTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
*
80939232 GCAGATCTAAGAT
66 GCAGATCCAAGAT
*
80939245 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
*
80939310 GTAGATCCAAGAT
66 GCAGATCCAAGAT
* *
80939323 GATTTGGCATCTCCGTATTAGACGGGGAGCAGATCGAAGACATAACAGAT-TGGACCTTCATTGA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCT-GACCTTCATTGA
80939387 AGCAGATCCAAGAT
65 AGCAGATCCAAGAT
* * * *
80939401 GATTTGGCATCTCTGTATTAGACGGAGAGCAGATCGAAGACATAGTAAATCTGACCTTCATCGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
80939466 GCAGATCCAAGAT
66 GCAGATCCAAGAT
*
80939479 AACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGA
1 ----GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGA
80939523 TAACAGATTT
Statistics
Matches: 252, Mismatches: 20, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
77 1 0.00
78 212 0.84
79 1 0.00
82 38 0.15
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.24
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:80939538 original size:45 final size:45
Alignment explanation
Indices: 80939465--80939620 Score: 249
Period size: 45 Copynumber: 3.5 Consensus size: 45
80939455 CCTTCATCGA
*
80939465 AGCAGATCCAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
1 AGCAGATCAAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
* *
80939510 AGCAAATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
1 AGCAGATCAAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
* * *
80939555 AGCAGATCAAAGATAATAGATTTGGCGTCTCTGTATTAGACAGGG
1 AGCAGATCAAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
*
80939600 AGCAGATCAAAGATAGCAGAT
1 AGCAGATCAAAGATAACAGAT
80939621 ATCGCCTTCC
Statistics
Matches: 102, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 102 1.00
ACGTcount: A:0.35, C:0.15, G:0.26, T:0.24
Consensus pattern (45 bp):
AGCAGATCAAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
Found at i:80939993 original size:19 final size:19
Alignment explanation
Indices: 80939969--80940042 Score: 132
Period size: 19 Copynumber: 3.9 Consensus size: 19
80939959 ATAATCTTCA
80939969 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
80939988 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
80940007 ATGAT-TGCCATCTTAGAT
1 ATGATATGCAATCTTAGAT
80940025 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
80940043 AGATATGATT
Statistics
Matches: 52, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
18 17 0.33
19 35 0.67
ACGTcount: A:0.35, C:0.12, G:0.16, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:80940020 original size:37 final size:38
Alignment explanation
Indices: 80939969--80940049 Score: 132
Period size: 37 Copynumber: 2.2 Consensus size: 38
80939959 ATAATCTTCA
80939969 ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
*
80940007 ATGAT-TGCCATCTTAGATATGATATGCAATCTTAGA-
1 ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
80940043 A-GATATG
1 ATGATATG
80940050 ATTTTGTAAT
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
35 3 0.07
36 3 0.07
37 30 0.73
38 5 0.12
ACGTcount: A:0.36, C:0.11, G:0.17, T:0.36
Consensus pattern (38 bp):
ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
Found at i:80940068 original size:22 final size:22
Alignment explanation
Indices: 80939969--80940065 Score: 88
Period size: 19 Copynumber: 4.8 Consensus size: 22
80939959 ATAATCTTCA
80939969 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
80939988 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
*
80940007 ATGAT-TGCCATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
80940025 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
80940047 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
80940066 GATTTAATTT
Statistics
Matches: 69, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
18 17 0.25
19 32 0.46
22 8 0.12
23 12 0.17
ACGTcount: A:0.35, C:0.10, G:0.16, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:80953433 original size:18 final size:18
Alignment explanation
Indices: 80953395--80953434 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
80953385 CTATTTAGCT
* **
80953395 ATATAGTTTTTAATTTTA
1 ATATAATTTTTAATTACA
80953413 ATATAATTTTTAATTACA
1 ATATAATTTTTAATTACA
80953431 ATAT
1 ATAT
80953435 TTATTATTTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.40, C:0.03, G:0.03, T:0.55
Consensus pattern (18 bp):
ATATAATTTTTAATTACA
Found at i:80957251 original size:17 final size:17
Alignment explanation
Indices: 80957229--80957263 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
80957219 AATAAATTTT
80957229 CCTTCTCTCAATTATCC
1 CCTTCTCTCAATTATCC
80957246 CCTTCTCTCAATTATCC
1 CCTTCTCTCAATTATCC
80957263 C
1 C
80957264 ACGTTTCATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.17, C:0.43, G:0.00, T:0.40
Consensus pattern (17 bp):
CCTTCTCTCAATTATCC
Found at i:80969178 original size:5 final size:5
Alignment explanation
Indices: 80969168--80969202 Score: 70
Period size: 5 Copynumber: 7.0 Consensus size: 5
80969158 GCAAATGGTT
80969168 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA
80969203 AAGTACATTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:80973594 original size:56 final size:57
Alignment explanation
Indices: 80973493--80973664 Score: 168
Period size: 58 Copynumber: 3.0 Consensus size: 57
80973483 CGCCGCAATA
*** * * *
80973493 GATCGAGAATTAATGGCGCTTTTTGAAAAACGCCGCTAAAGATCAAGCATTAGCGGC
1 GATCGAGAATTAGCAGCGCTTTCTGAAAAATGCAGCTAAAGATCAAGCATTAGCGGC
***** * * *
80973550 G-TTTTTCATTAGCAGCGCTTTCCTG-AAAATGTAGCTAAAGATCAAGCATTAGTGGAA
1 GATCGAGAATTAGCAGCGCTTT-CTGAAAAATGCAGCTAAAGATCAAGCATTAGCGG-C
* *
80973607 GATCGAGAATTAGCGGCGCTTTCTGAAAAATGCCGCTAAAGATCAAGCATTAGCGGC
1 GATCGAGAATTAGCAGCGCTTTCTGAAAAATGCAGCTAAAGATCAAGCATTAGCGGC
80973664 G
1 G
80973665 CTTTCTAAAA
Statistics
Matches: 87, Mismatches: 24, Indels: 8
0.73 0.20 0.07
Matches are distributed among these distances:
56 38 0.44
57 8 0.09
58 41 0.47
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25
Consensus pattern (57 bp):
GATCGAGAATTAGCAGCGCTTTCTGAAAAATGCAGCTAAAGATCAAGCATTAGCGGC
Found at i:80973660 original size:40 final size:40
Alignment explanation
Indices: 80973605--80973757 Score: 186
Period size: 40 Copynumber: 3.8 Consensus size: 40
80973595 GCATTAGTGG
* * *
80973605 AAGATCGAGAATTAGCGGCGCTTTCTGAAAAATGCCGCTA
1 AAGATCGAGCATTAGCGGCGCTTTCTAAAAAATACCGCTA
* *
80973645 AAGATCAAGCATTAGCGGCGCTTTCTAAAAAACACCGCTA
1 AAGATCGAGCATTAGCGGCGCTTTCTAAAAAATACCGCTA
* *
80973685 AAGATCGAGCATTAGCGGCACTTT-TTAAAAATCACCGC-A
1 AAGATCGAGCATTAGCGGCGCTTTCTAAAAAAT-ACCGCTA
*
80973724 ATAGATCGAGCATTAGTGGCGCTTT-TCAAAAAAT
1 A-AGATCGAGCATTAGCGGCGCTTTCT-AAAAAAT
80973758 GCCACAAAAA
Statistics
Matches: 98, Mismatches: 12, Indels: 5
0.85 0.10 0.04
Matches are distributed among these distances:
39 8 0.08
40 84 0.86
41 6 0.06
ACGTcount: A:0.35, C:0.21, G:0.20, T:0.24
Consensus pattern (40 bp):
AAGATCGAGCATTAGCGGCGCTTTCTAAAAAATACCGCTA
Found at i:80973965 original size:21 final size:21
Alignment explanation
Indices: 80973930--80973974 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
80973920 TATTTTGTGA
**
80973930 TTAGAGTTTTGAGTTTAG-GGT
1 TTAGAGTTTAAAGTTT-GTGGT
80973951 TTAGAGTTTAAAGTTTGTGGT
1 TTAGAGTTTAAAGTTTGTGGT
80973972 TTA
1 TTA
80973975 AGGTTTATTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 1 0.05
21 20 0.95
ACGTcount: A:0.22, C:0.00, G:0.29, T:0.49
Consensus pattern (21 bp):
TTAGAGTTTAAAGTTTGTGGT
Found at i:80974183 original size:14 final size:14
Alignment explanation
Indices: 80974148--80974197 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
80974138 AATATATATT
* *
80974148 TAAGATTTAGGGTG
1 TAAGATTTATGGTC
80974162 TAAG-TTTATGGTC
1 TAAGATTTATGGTC
*
80974175 TAAGATTTATGGTT
1 TAAGATTTATGGTC
*
80974189 TATGATTTA
1 TAAGATTTA
80974198 GGGGTTGAGG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
13 11 0.35
14 20 0.65
ACGTcount: A:0.28, C:0.02, G:0.24, T:0.46
Consensus pattern (14 bp):
TAAGATTTATGGTC
Found at i:80975069 original size:7 final size:7
Alignment explanation
Indices: 80975056--80975106 Score: 75
Period size: 7 Copynumber: 7.0 Consensus size: 7
80975046 AAATCTTCAA
80975056 AAAAATTT
1 AAAAA-TT
*
80975064 AAAATTT
1 AAAAATT
80975071 AAAAATT
1 AAAAATT
80975078 AAAAACTT
1 AAAAA-TT
80975086 AAAAATT
1 AAAAATT
80975093 AAAAATT
1 AAAAATT
80975100 AAAAATT
1 AAAAATT
80975107 TAATATTTTA
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
7 29 0.73
8 11 0.28
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (7 bp):
AAAAATT
Found at i:80975076 original size:15 final size:15
Alignment explanation
Indices: 80975056--80975114 Score: 75
Period size: 15 Copynumber: 4.0 Consensus size: 15
80975046 AAATCTTCAA
80975056 AAAAATTTAAAATTT
1 AAAAATTTAAAATTT
* *
80975071 AAAAATTAAAAACTT
1 AAAAATTTAAAATTT
*
80975086 AAAAA-TTAAAAATT
1 AAAAATTTAAAATTT
*
80975100 AAAAATTTAATATTT
1 AAAAATTTAAAATTT
80975115 TAGTCCATAT
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
14 12 0.32
15 25 0.68
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.36
Consensus pattern (15 bp):
AAAAATTTAAAATTT
Found at i:80975081 original size:22 final size:22
Alignment explanation
Indices: 80975056--80975114 Score: 91
Period size: 22 Copynumber: 2.7 Consensus size: 22
80975046 AAATCTTCAA
80975056 AAAAATTTAAAATTTAAAAATT
1 AAAAATTTAAAATTTAAAAATT
* *
80975078 AAAAACTTAAAAATTAAAAATT
1 AAAAATTTAAAATTTAAAAATT
*
80975100 AAAAATTTAATATTT
1 AAAAATTTAAAATTT
80975115 TAGTCCATAT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.36
Consensus pattern (22 bp):
AAAAATTTAAAATTTAAAAATT
Found at i:80980550 original size:46 final size:46
Alignment explanation
Indices: 80980500--80980666 Score: 178
Period size: 46 Copynumber: 3.6 Consensus size: 46
80980490 AGCATCTGAG
*
80980500 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAA
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAA
* * * * *
80980546 CTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCATCTGAA
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CGTCCGAA
* * * * *
80980593 CTCATTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAA
80980639 CTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CTCGTTGAGTTGAGTCCGAGTTCACTTA
80980667 GGGGCGGGTT
Statistics
Matches: 97, Mismatches: 17, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 53 0.55
47 27 0.28
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.31
Consensus pattern (46 bp):
CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAA
Found at i:80980650 original size:93 final size:93
Alignment explanation
Indices: 80980491--80980661 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
80980481 GGATGGTTGA
* * * *
80980491 GCATCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCTGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
80980556 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
80980584 GCATCTGAACTCATTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCTGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
80980649 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
80980662 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCTGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:80982469 original size:15 final size:14
Alignment explanation
Indices: 80982449--80982478 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
80982439 TGGTCACAAA
80982449 ATGATTAAAATATAT
1 ATGATTAAAAT-TAT
80982464 ATGATTAAAATTAT
1 ATGATTAAAATTAT
80982478 A
1 A
80982479 GACTTCTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.53, C:0.00, G:0.07, T:0.40
Consensus pattern (14 bp):
ATGATTAAAATTAT
Found at i:80984330 original size:56 final size:56
Alignment explanation
Indices: 80984244--80984351 Score: 180
Period size: 56 Copynumber: 1.9 Consensus size: 56
80984234 AAATGTCATG
* * *
80984244 ACTTTTAGCGGTGTTTGTGGGAAAAGCGCCGCTAAAGGTTATGATCTTTAGCCATA
1 ACTTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGACCTTTAGCCATA
*
80984300 ACTTTTAGCGGCGTTTGTGGGAAAGGCGCCGCTAAAGGTCATGACCTTTAGC
1 ACTTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGACCTTTAGC
80984352 GGCGTTTTTT
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
56 48 1.00
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.30
Consensus pattern (56 bp):
ACTTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGACCTTTAGCCATA
Found at i:80999530 original size:46 final size:47
Alignment explanation
Indices: 80999353--80999530 Score: 147
Period size: 46 Copynumber: 3.8 Consensus size: 47
80999343 ATTGTGGGCT
* *
80999353 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTA--TAAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-GACGT-AGAGCC
* * * * * *
80999399 TGTGAAAGACCATGTTTGGGACATGGTATCGGC-ATCGAGACG-AGTGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTA-CGAGACGTAGAGCC
*
80999447 AGTGTAAGACATGTCCGGGACAT-CTATCGGCCT-CGAGACGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGC-ATCGG-CTACGAGACGTAGAGCC
*
80999493 AATGTAAGACATGTCTGGGACATGCATCGGCTACGAGA
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGA
80999531 TTATAGTCAG
Statistics
Matches: 104, Mismatches: 16, Indels: 24
0.72 0.11 0.17
Matches are distributed among these distances:
45 2 0.02
46 52 0.50
47 29 0.28
48 20 0.19
49 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGACGTAGAGCC
Found at i:81022541 original size:44 final size:44
Alignment explanation
Indices: 81022478--81022634 Score: 182
Period size: 43 Copynumber: 3.6 Consensus size: 44
81022468 TGTGATATTG
* *
81022478 TGTAAGACCACGTCTGGGACGTTGGCATCGACT-TATGATTTACA
1 TGTAAGACCACGTCTAGGACGTTGGCATCGA-TATTTGATTTACA
* * *
81022522 TGTAAGACCACGTCTGGGACATTGGCATC-ATATTTAATTT-CA
1 TGTAAGACCACGTCTAGGACGTTGGCATCGATATTTGATTTACA
81022564 TGTAAGACC-CTGTCTAGGACAG-TGGCATCGATATTTGA-TTACA
1 TGTAAGACCAC-GTCTAGGAC-GTTGGCATCGATATTTGATTTACA
* *
81022607 TGTAAGACCATGTTTAGGACGTTGGCAT
1 TGTAAGACCACGTCTAGGACGTTGGCAT
81022635 TATATGAGCT
Statistics
Matches: 98, Mismatches: 8, Indels: 15
0.81 0.07 0.12
Matches are distributed among these distances:
41 1 0.01
42 30 0.31
43 39 0.40
44 28 0.29
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (44 bp):
TGTAAGACCACGTCTAGGACGTTGGCATCGATATTTGATTTACA
Found at i:81023276 original size:10 final size:10
Alignment explanation
Indices: 81023261--81023285 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
81023251 CCAAATGAAA
81023261 TGGTAAATTT
1 TGGTAAATTT
81023271 TGGTAAATTT
1 TGGTAAATTT
81023281 TGGTA
1 TGGTA
81023286 TGTGTATATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.28, C:0.00, G:0.24, T:0.48
Consensus pattern (10 bp):
TGGTAAATTT
Found at i:81025927 original size:26 final size:26
Alignment explanation
Indices: 81025898--81025979 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
81025888 TGATACAAAT
*
81025898 TGATAATGGGCTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81025924 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81025950 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81025976 TGAT
1 TGAT
81025980 GGGAATTTCA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.30, C:0.09, G:0.27, T:0.34
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:81027610 original size:27 final size:27
Alignment explanation
Indices: 81027570--81027700 Score: 162
Period size: 27 Copynumber: 4.9 Consensus size: 27
81027560 AGGAAGCGTC
*
81027570 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
81027597 CTGGTGGCTCTGCCAC-ATATATCTG-T
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
81027623 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAATTATCTGAT
* * *
81027651 CTAGTAGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
81027678 CTGGTGGCTCTGCCACAA-TATCT
1 CTGGTGGCTCTGCCACAATTATCT
81027701 ATATCTAGTG
Statistics
Matches: 90, Mismatches: 8, Indels: 13
0.81 0.07 0.12
Matches are distributed among these distances:
26 10 0.11
27 76 0.84
28 4 0.04
ACGTcount: A:0.20, C:0.26, G:0.21, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:81027649 original size:54 final size:54
Alignment explanation
Indices: 81027567--81027709 Score: 225
Period size: 54 Copynumber: 2.6 Consensus size: 54
81027557 TGGAGGAAGC
* *
81027567 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTAGTAGCTCTGCCACATATATCT
81027621 GTCCTGGTGGCTATGCCACAATTATCTGATCTAGTAGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTAGTAGCTCTGCCACATATATCT
* * *
81027675 GTTCTGGTGGCTCTGCCACAA-TATCTATATCTAGT
1 GTCCTGGTGGCTATGCCACAATTATCT-GATCTAGT
81027710 GACTTCGTCA
Statistics
Matches: 83, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
53 5 0.06
54 78 0.94
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.34
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTAGTAGCTCTGCCACATATATCT
Found at i:81032350 original size:27 final size:27
Alignment explanation
Indices: 81032310--81032450 Score: 157
Period size: 27 Copynumber: 5.2 Consensus size: 27
81032300 AGGAAGCGTC
*
81032310 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
81032337 CTGGTGGCTCTGCCAC-ATATATCTG-T
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
81032363 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAATTATCTGAT
*
81032391 CTGGTGGCTCTGCCAC-GTATATCT-ATT
1 CTGGTGGCTCTGCCACAAT-TATCTGA-T
* *
81032418 CTAGTGGCTCTGCCACAA-TATCTATAT
1 CTGGTGGCTCTGCCACAATTATCT-GAT
81032445 CTGGTG
1 CTGGTG
81032451 ACTTCGTCAC
Statistics
Matches: 98, Mismatches: 7, Indels: 18
0.80 0.06 0.15
Matches are distributed among these distances:
26 10 0.10
27 84 0.86
28 4 0.04
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:81032371 original size:54 final size:54
Alignment explanation
Indices: 81032307--81032450 Score: 218
Period size: 54 Copynumber: 2.7 Consensus size: 54
81032297 TGGAGGAAGC
81032307 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
*
81032361 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACGTATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* * * * *
81032415 ATTCTAGTGGCTCTGCCACAA-TATCTATATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCT-GATCTGGTG
81032451 ACTTCGTCAC
Statistics
Matches: 83, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
53 5 0.06
54 78 0.94
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:81032462 original size:81 final size:80
Alignment explanation
Indices: 81032310--81032468 Score: 182
Period size: 81 Copynumber: 2.0 Consensus size: 80
81032300 AGGAAGCGTC
* * *
81032310 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGGCTAT
1 CTGGTGGCTATGCCACAATTATCTGATCTAGTGGCTCTGCCACATATATCTATCCTGGTGACTAT
81032375 GCCACAATTATCTGAT
66 GCCACAA-TATCTGAT
* * *
81032391 CTGGTGGCTCTGCCAC-GTATATCT-ATTCTAGTGGCTCTGCCACA-ATATCTATATCTGGTGAC
1 CTGGTGGCTATGCCACAAT-TATCTGA-TCTAGTGGCTCTGCCACATATATCTAT-CCTGGTGAC
*
81032453 T-TCGTCACAATATCTG
63 TAT-GCCACAATATCTG
81032469 GCAGCCTCGC
Statistics
Matches: 67, Mismatches: 7, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
80 16 0.24
81 51 0.76
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.34
Consensus pattern (80 bp):
CTGGTGGCTATGCCACAATTATCTGATCTAGTGGCTCTGCCACATATATCTATCCTGGTGACTAT
GCCACAATATCTGAT
Found at i:81036658 original size:14 final size:14
Alignment explanation
Indices: 81036630--81036675 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
81036620 AGAGAGGAAA
**
81036630 GAATGATGAATGAT
1 GAATGATGAGGGAT
81036644 GAATGATGAGGGAT
1 GAATGATGAGGGAT
* *
81036658 GTATGATGTGGGAT
1 GAATGATGAGGGAT
81036672 GAAT
1 GAAT
81036676 AGAAATGTGA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.35, C:0.00, G:0.37, T:0.28
Consensus pattern (14 bp):
GAATGATGAGGGAT
Found at i:81041853 original size:40 final size:40
Alignment explanation
Indices: 81041807--81041993 Score: 240
Period size: 39 Copynumber: 4.7 Consensus size: 40
81041797 ACTACTTGCT
81041807 CAAATGCCTTCGGGACTT-GACCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAG-CCCGGTTATAGTAACTCGCA
81041847 CAAATGCCTTCGGGACTTAGCCCGGTTCA-A-TAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTT-ATAGTAACTCGCA
* * *
81041886 CCAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * * *
81041926 CAATTGCCTTCGGG-TTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
81041965 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
81041994 CATCCGAATA
Statistics
Matches: 128, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
38 2 0.02
39 66 0.52
40 57 0.45
41 3 0.02
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:81041910 original size:79 final size:78
Alignment explanation
Indices: 81041807--81041993 Score: 252
Period size: 79 Copynumber: 2.4 Consensus size: 78
81041797 ACTACTTGCT
*
81041807 CAAATGCCTTCGGGACTT-GACCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAG-CCCGGTTATAATAACTCGCACAAATGCCTTCGGG-CTTAGCCCG
*
81041871 G-TTCAATAACTCGCA
64 GATT-AATAACTAGCA
* * * *
81041886 CCAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAATTGCCTTCGGGTTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAATAACTCGCACAAATGCCTTCGGGCTTAGCCCGG-
* *
81041951 ATTAGTCACTAGCA
65 ATTAATAACTAGCA
81041965 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
81041994 CATCCGAATA
Statistics
Matches: 95, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
78 9 0.09
79 83 0.87
80 3 0.03
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAATAACTCGCACAAATGCCTTCGGGCTTAGCCCGGA
TTAATAACTAGCA
Found at i:81048473 original size:40 final size:40
Alignment explanation
Indices: 81048427--81048613 Score: 231
Period size: 39 Copynumber: 4.7 Consensus size: 40
81048417 ACTACTTGCT
81048427 CAAATGCCTTCGGGACTT-GACCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAG-CCCGGTTATAGTAACTCGCA
81048467 CAAATGCCTTCGGGACTTAGCCCGGTTCA-A-TAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTT-ATAGTAACTCGCA
* * *
81048506 CCAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * ** * *
81048546 CAATTGCCTTCGGG-TTTAGCCC-GAAATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
81048585 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
81048614 CATCCGAATA
Statistics
Matches: 127, Mismatches: 13, Indels: 14
0.82 0.08 0.09
Matches are distributed among these distances:
38 4 0.03
39 64 0.50
40 55 0.43
41 4 0.03
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:81048530 original size:79 final size:78
Alignment explanation
Indices: 81048427--81048613 Score: 243
Period size: 79 Copynumber: 2.4 Consensus size: 78
81048417 ACTACTTGCT
*
81048427 CAAATGCCTTCGGGACTT-GACCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAG-CCCGGTTATAATAACTCGCACAAATGCCTTCGGG-CTTAGCCCG
* *
81048491 -GTTCAATAACTCGCA
64 AATT-AATAACTAGCA
* * * *
81048506 CCAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAATTGCCTTCGGGTTTAGCCCGAA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAATAACTCGCACAAATGCCTTCGGGCTTAGCCCG-A
* *
81048571 ATTAGTCACTAGCA
65 ATTAATAACTAGCA
81048585 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
81048614 CATCCGAATA
Statistics
Matches: 94, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
78 8 0.09
79 83 0.88
80 3 0.03
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAATAACTCGCACAAATGCCTTCGGGCTTAGCCCGAA
TTAATAACTAGCA
Found at i:81055759 original size:41 final size:41
Alignment explanation
Indices: 81055633--81055818 Score: 252
Period size: 41 Copynumber: 4.6 Consensus size: 41
81055623 CTCGCACAAG
* * * * * *
81055633 GCCTTCGGGTCTTAACCCGGATATGGTC-ATTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
*
81055673 GCCTTCGGGACTTAGCCCGGATATAGTCG-TTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
* *
81055713 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGCTTAGCACAAAA
81055754 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
*
81055795 GCCTTTGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
81055819 CATTCGAGTA
Statistics
Matches: 132, Mismatches: 10, Indels: 7
0.89 0.07 0.05
Matches are distributed among these distances:
39 3 0.02
40 58 0.44
41 68 0.52
42 3 0.02
ACGTcount: A:0.24, C:0.25, G:0.25, T:0.26
Consensus pattern (41 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
Found at i:81055766 original size:81 final size:82
Alignment explanation
Indices: 81055662--81055816 Score: 242
Period size: 81 Copynumber: 1.9 Consensus size: 82
81055652 GATATGGTCA
* * *
81055662 TTAGCATAAATGCCTTCGGGACTTAGCCCGGATATAGTCG-TTAGCACAAATGCC-TTCGGATCT
1 TTAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAAGCCTTTCGGA-CT
*
81055725 TAGTCCGGATGTAGTCGC
65 TAGCCCGGATGTAGTCGC
*
81055743 TTAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAAGCCTTTGGGACTT
1 TTAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAAGCCTTTCGGACTT
81055808 AGCCCGGAT
66 AGCCCGGAT
81055817 ATCATTCGAG
Statistics
Matches: 67, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 38 0.57
82 24 0.36
83 5 0.07
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (82 bp):
TTAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAAGCCTTTCGGACTT
AGCCCGGATGTAGTCGC
Found at i:81058994 original size:13 final size:13
Alignment explanation
Indices: 81058976--81059001 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
81058966 CCAATAAAAA
81058976 TCTGAAGAACCAC
1 TCTGAAGAACCAC
81058989 TCTGAAGAACCAC
1 TCTGAAGAACCAC
81059002 CTATCGAAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.31, G:0.15, T:0.15
Consensus pattern (13 bp):
TCTGAAGAACCAC
Found at i:81066792 original size:12 final size:12
Alignment explanation
Indices: 81066741--81066792 Score: 52
Period size: 12 Copynumber: 4.1 Consensus size: 12
81066731 ACTTAATCAC
81066741 TTTAATATTAAAA
1 TTTAATATT-AAA
81066754 TTTAAT-TTAATA
1 TTTAATATTAA-A
*
81066766 TTTATTAGATTAAA
1 TTTA--ATATTAAA
81066780 TTTAATATTAAA
1 TTTAATATTAAA
81066792 T
1 T
81066793 CTTATTAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 9
0.75 0.05 0.20
Matches are distributed among these distances:
11 2 0.06
12 15 0.45
13 6 0.18
14 6 0.18
15 4 0.12
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (12 bp):
TTTAATATTAAA
Found at i:81068827 original size:24 final size:22
Alignment explanation
Indices: 81068787--81068834 Score: 53
Period size: 24 Copynumber: 2.1 Consensus size: 22
81068777 ATGCCTTTGA
*
81068787 GATGTGGTTTGTGATTGTGTATAT
1 GATGTGGTTTGTAATTG-GT-TAT
81068811 GATGT-GTTATGTAATTGGTTAT
1 GATGTGGTT-TGTAATTGGTTAT
81068833 GA
1 GA
81068835 ATGCTTGTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
22 5 0.23
23 5 0.23
24 12 0.55
ACGTcount: A:0.21, C:0.00, G:0.31, T:0.48
Consensus pattern (22 bp):
GATGTGGTTTGTAATTGGTTAT
Found at i:81069810 original size:29 final size:29
Alignment explanation
Indices: 81069777--81069835 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 29
81069767 TTTATCTTGT
81069777 AGATAAACATTAATTTAAATTTAATATTA
1 AGATAAACATTAATTTAAATTTAATATTA
**
81069806 AGATAAGTATTAATTTAAATTTAATATTA
1 AGATAAACATTAATTTAAATTTAATATTA
81069835 A
1 A
81069836 ATTATTACAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.51, C:0.02, G:0.05, T:0.42
Consensus pattern (29 bp):
AGATAAACATTAATTTAAATTTAATATTA
Found at i:81071469 original size:14 final size:15
Alignment explanation
Indices: 81071436--81071467 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
81071426 TATGCATGTA
*
81071436 AAATATAAAAAACAT
1 AAATACAAAAAACAT
81071451 AAATACAAAAAACAT
1 AAATACAAAAAACAT
81071466 AA
1 AA
81071468 TAGTGAAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.75, C:0.09, G:0.00, T:0.16
Consensus pattern (15 bp):
AAATACAAAAAACAT
Found at i:81075364 original size:12 final size:12
Alignment explanation
Indices: 81075331--81075365 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
81075321 TGAGACAAGA
81075331 TATTCTTTAAAT
1 TATTCTTTAAAT
*
81075343 TACTCTTTTAAAT
1 TATTC-TTTAAAT
81075356 TATTCTTTAA
1 TATTCTTTAA
81075366 GTAACATAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.31, C:0.11, G:0.00, T:0.57
Consensus pattern (12 bp):
TATTCTTTAAAT
Found at i:81075514 original size:19 final size:22
Alignment explanation
Indices: 81075468--81075513 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 22
81075458 AAGTAGGTTG
81075468 TATATTATTTTTTGTAATATTA
1 TATATTATTTTTTGTAATATTA
81075490 TATATTATTTTTAT-TAAT-TTA
1 TATATTATTTTT-TGTAATATTA
81075511 TAT
1 TAT
81075514 TTTAATAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 6 0.26
22 16 0.70
23 1 0.04
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (22 bp):
TATATTATTTTTTGTAATATTA
Found at i:81075566 original size:21 final size:20
Alignment explanation
Indices: 81075537--81075576 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
81075527 ATATTAAGAA
81075537 TATTATTAAATTATATATTAT
1 TATTATTAAATTATA-ATTAT
*
81075558 TATTGTTAAATTATAATTA
1 TATTATTAAATTATAATTA
81075577 ATAATTTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (20 bp):
TATTATTAAATTATAATTAT
Found at i:81075637 original size:57 final size:57
Alignment explanation
Indices: 81075486--81075639 Score: 170
Period size: 57 Copynumber: 2.6 Consensus size: 57
81075476 TTTTTGTAAT
* **
81075486 ATTATATATTATTTTTATTAATTTATATTTTAATAATTACTATATTAAGAATATTATTAA
1 ATTATATATTATTTTTATTAAATTATA-TTTAATAA-TA-TATATTAAGAATAGGATTAA
* * *
81075546 ATTATATATTATTATTGTTAAATTATAATTAATAAT-T-TATTAA-AATAGGATTAA
1 ATTATATATTATTTTTATTAAATTATATTTAATAATATATATTAAGAATAGGATTAA
*
81075600 ATTATGTATTATTGTTTTTATTAAATTATATTTAATAATA
1 ATTA--TA-TATTATTTTTATTAAATTATATTTAATAATA
81075640 ATCCTATTAA
Statistics
Matches: 80, Mismatches: 10, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
54 13 0.16
55 6 0.08
56 3 0.04
57 26 0.32
58 1 0.01
59 7 0.09
60 24 0.30
ACGTcount: A:0.42, C:0.01, G:0.04, T:0.53
Consensus pattern (57 bp):
ATTATATATTATTTTTATTAAATTATATTTAATAATATATATTAAGAATAGGATTAA
Found at i:81078620 original size:16 final size:16
Alignment explanation
Indices: 81078596--81078654 Score: 73
Period size: 16 Copynumber: 3.7 Consensus size: 16
81078586 GGATATTACA
*
81078596 ATTCTATTACAACTCT
1 ATTCCATTACAACTCT
**
81078612 ATTCCATTACAGTTCT
1 ATTCCATTACAACTCT
* *
81078628 ATTTCATTACAACCCT
1 ATTCCATTACAACTCT
81078644 ATTCCATTACA
1 ATTCCATTACA
81078655 CTGAACCAAA
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.31, C:0.27, G:0.02, T:0.41
Consensus pattern (16 bp):
ATTCCATTACAACTCT
Found at i:81080351 original size:3 final size:3
Alignment explanation
Indices: 81080343--81080393 Score: 50
Period size: 3 Copynumber: 16.0 Consensus size: 3
81080333 AATAGGGGTG
*
81080343 ATA ATA ATA ATA ATA ATA ATA CA-A ACA ATA ATA CATA TATA TATA ATA
1 ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA -ATA -ATA -ATA ATA
81080391 ATA
1 ATA
81080394 GTAGTCAGAA
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
2 1 0.02
3 31 0.72
4 11 0.26
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:81080481 original size:3 final size:3
Alignment explanation
Indices: 81080468--81080547 Score: 53
Period size: 3 Copynumber: 26.3 Consensus size: 3
81080458 AATGGCATAT
81080468 ATA AT- ATA ATA ATA AT- ATAA ATA ATA ATA TATA CATGA GA-A ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A -ATA ATA
* *
81080512 ATA ATA AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA A
1 ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA A
81080548 AAAAATAAAA
Statistics
Matches: 62, Mismatches: 6, Indels: 18
0.72 0.07 0.21
Matches are distributed among these distances:
2 9 0.15
3 42 0.68
4 9 0.15
5 2 0.03
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:81080492 original size:12 final size:12
Alignment explanation
Indices: 81080468--81080548 Score: 78
Period size: 12 Copynumber: 6.8 Consensus size: 12
81080458 AATGGCATAT
81080468 ATAATAT-AATA
1 ATAATATAAATA
81080479 ATAATATAAATA
1 ATAATATAAATA
*
81080491 ATAATATATACATG
1 ATAATATA-A-ATA
*
81080505 AGAA-AT-AATA
1 ATAATATAAATA
81080515 ATAATATAAATA
1 ATAATATAAATA
* *
81080527 ATAGTAAAAATA
1 ATAATATAAATA
*
81080539 ATAAAATAAA
1 ATAATATAAA
81080549 AAAATAAAAC
Statistics
Matches: 56, Mismatches: 9, Indels: 9
0.76 0.12 0.12
Matches are distributed among these distances:
10 5 0.09
11 10 0.18
12 33 0.59
13 3 0.05
14 5 0.09
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (12 bp):
ATAATATAAATA
Found at i:81080494 original size:18 final size:18
Alignment explanation
Indices: 81080464--81080543 Score: 67
Period size: 18 Copynumber: 4.4 Consensus size: 18
81080454 TGGAAATGGC
81080464 ATATATAAT-ATAATAATA
1 ATATA-AATAATAATAATA
81080482 ATATAAATAATAATATATA
1 ATATAAATAATAATA-ATA
* *
81080501 CAT-GAGA-AATAATAATA
1 -ATATAAATAATAATAATA
* *
81080518 ATATAAATAATAGTAAAA
1 ATATAAATAATAATAATA
81080536 ATAATAAA
1 AT-ATAAA
81080544 ATAAAAAAAT
Statistics
Matches: 50, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
16 2 0.04
17 8 0.16
18 28 0.56
19 10 0.20
20 2 0.04
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.31
Consensus pattern (18 bp):
ATATAAATAATAATAATA
Found at i:81080983 original size:13 final size:13
Alignment explanation
Indices: 81080965--81081024 Score: 52
Period size: 13 Copynumber: 4.7 Consensus size: 13
81080955 GGGTGGTTTA
81080965 GGTGGCCAAGGTG
1 GGTGGCCAAGGTG
***
81080978 GGTGGCCAACAAG
1 GGTGGCCAAGGTG
* *
81080991 GGTGG--TAGAGTA
1 GGTGGCCAAG-GTG
81081003 GGTGGCCAAGGTG
1 GGTGGCCAAGGTG
81081016 GGTGGCCAA
1 GGTGGCCAA
81081025 CATGGGTGGT
Statistics
Matches: 34, Mismatches: 10, Indels: 6
0.68 0.20 0.12
Matches are distributed among these distances:
11 1 0.03
12 5 0.15
13 26 0.76
14 2 0.06
ACGTcount: A:0.22, C:0.15, G:0.48, T:0.15
Consensus pattern (13 bp):
GGTGGCCAAGGTG
Found at i:81081007 original size:38 final size:38
Alignment explanation
Indices: 81080963--81081045 Score: 148
Period size: 38 Copynumber: 2.2 Consensus size: 38
81080953 TGGGGTGGTT
81080963 TAGGTGGCCAAGGTGGGTGGCCAACAAGGGTGGTAGAG
1 TAGGTGGCCAAGGTGGGTGGCCAACAAGGGTGGTAGAG
* *
81081001 TAGGTGGCCAAGGTGGGTGGCCAACATGGGTGGTGGAG
1 TAGGTGGCCAAGGTGGGTGGCCAACAAGGGTGGTAGAG
81081039 TAGGTGG
1 TAGGTGG
81081046 GATTAAGGTT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
38 43 1.00
ACGTcount: A:0.20, C:0.12, G:0.49, T:0.18
Consensus pattern (38 bp):
TAGGTGGCCAAGGTGGGTGGCCAACAAGGGTGGTAGAG
Found at i:81081442 original size:21 final size:21
Alignment explanation
Indices: 81081418--81081524 Score: 74
Period size: 21 Copynumber: 5.2 Consensus size: 21
81081408 AATCAATTCC
*
81081418 ACTGAAACTTCAAGGAGATCT
1 ACTGAAACTTCAAGTAGATCT
* * * * *
81081439 ACTGTAGCTTCGATTA-ATCC
1 ACTGAAACTTCAAGTAGATCT
81081459 ACTGAAACTTCAAGTAGATCT
1 ACTGAAACTTCAAGTAGATCT
* * * * * *
81081480 GCTGTAGCTTCGATTA-ATCC
1 ACTGAAACTTCAAGTAGATCT
* *
81081500 ACTAAAACTTCAAGGAGATCT
1 ACTGAAACTTCAAGTAGATCT
81081521 ACTG
1 ACTG
81081525 TGGCTTTTAG
Statistics
Matches: 58, Mismatches: 26, Indels: 4
0.66 0.30 0.05
Matches are distributed among these distances:
20 27 0.47
21 31 0.53
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (21 bp):
ACTGAAACTTCAAGTAGATCT
Found at i:81081465 original size:41 final size:41
Alignment explanation
Indices: 81081415--81081530 Score: 196
Period size: 41 Copynumber: 2.8 Consensus size: 41
81081405 TTCAATCAAT
81081415 TCCACTGAAACTTCAAGGAGATCTACTGTAGCTTCGATTAA
1 TCCACTGAAACTTCAAGGAGATCTACTGTAGCTTCGATTAA
* *
81081456 TCCACTGAAACTTCAAGTAGATCTGCTGTAGCTTCGATTAA
1 TCCACTGAAACTTCAAGGAGATCTACTGTAGCTTCGATTAA
* *
81081497 TCCACTAAAACTTCAAGGAGATCTACTGTGGCTT
1 TCCACTGAAACTTCAAGGAGATCTACTGTAGCTT
81081531 TTAGCTGCTC
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 69 1.00
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.30
Consensus pattern (41 bp):
TCCACTGAAACTTCAAGGAGATCTACTGTAGCTTCGATTAA
Found at i:81081469 original size:20 final size:20
Alignment explanation
Indices: 81081446--81081510 Score: 58
Period size: 20 Copynumber: 3.2 Consensus size: 20
81081436 TCTACTGTAG
81081446 CTTCGATTAATCCACTGAAA
1 CTTCGATTAATCCACTGAAA
* * ** * *
81081466 CTTCAAGTAGATCTGCTGTAG
1 CTTCGATTA-ATCCACTGAAA
*
81081487 CTTCGATTAATCCACTAAAA
1 CTTCGATTAATCCACTGAAA
81081507 CTTC
1 CTTC
81081511 AAGGAGATCT
Statistics
Matches: 31, Mismatches: 13, Indels: 2
0.67 0.28 0.04
Matches are distributed among these distances:
20 17 0.55
21 14 0.45
ACGTcount: A:0.31, C:0.25, G:0.12, T:0.32
Consensus pattern (20 bp):
CTTCGATTAATCCACTGAAA
Found at i:81081641 original size:44 final size:44
Alignment explanation
Indices: 81081578--81081908 Score: 157
Period size: 44 Copynumber: 7.6 Consensus size: 44
81081568 GATTTTCAAC
81081578 CTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTCATCATTGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTCATCATTGAT
* * * * * *
81081622 CTGTTTCCCTACTGCTTAGGTGTTTAAGATCTTGTAAAATCA--G-C
1 CTGTTACCCTACTGCTTAGGGGGTTAAG-GCTTGT--CATCATTGAT
** ** * *
81081666 CTGTTACCCTACTGCTTAGGGCTTTAAGGCTCATC-GCCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTCATCATT-GAT
* * * * *
81081710 TTGTTTCCCTACTGCTTAGGGGGTTAA-GATCTGT-A-AATTTAGT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGGCT-TGTCATCATTGA-T
** * ** *
81081753 CTGTTACCCTACTGCTTAGGGTTTTAAGACTCATCATC-TTCAAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTCATCATT-GAT
* * * *
81081797 CTGCTT-CCCTACTGCTTAGGGGGTTGAGG-TCTGT-A-AATTTAGC
1 CTG-TTACCCTACTGCTTAGGGGGTTAAGGCT-TGTCATCATTGA-T
* * ** *
81081840 CTGTTACCCTACTGCTTAGGGGTTTAAGACTCATCATC-TTCAAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTCATCATT-GAT
* * *
81081884 CTGTTTCCTTACTGCTTAAGGGGTT
1 CTGTTACCCTACTGCTTAGGGGGTT
81081909 GAGATCTGTA
Statistics
Matches: 207, Mismatches: 57, Indels: 46
0.67 0.18 0.15
Matches are distributed among these distances:
40 1 0.00
42 4 0.02
43 61 0.29
44 127 0.61
45 10 0.05
47 4 0.02
ACGTcount: A:0.19, C:0.22, G:0.21, T:0.38
Consensus pattern (44 bp):
CTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTCATCATTGAT
Found at i:81081786 original size:87 final size:87
Alignment explanation
Indices: 81081577--81081921 Score: 440
Period size: 87 Copynumber: 4.0 Consensus size: 87
81081567 TGATTTTCAA
* * ** * *
81081577 CCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTCATCATT-GATCTGTTTCCCTACTGCTTAG
1 CCTGTTACCCTACTGCTTAGGGGTTTAAGACTCATCA-CCTTCAATCTGTTTCCCTACTGCTTAG
* * * *
81081641 GTGTTTAAGATCTTGTAAAATCAG
65 GGGGTTAAGATC-TGTAAATTTAG
* * * * *
81081665 CCTGTTACCCTACTGCTTAGGGCTTTAAGGCTCATCGCCTTCGATTTGTTTCCCTACTGCTTAGG
1 CCTGTTACCCTACTGCTTAGGGGTTTAAGACTCATCACCTTCAATCTGTTTCCCTACTGCTTAGG
81081730 GGGTTAAGATCTGTAAATTTAG
66 GGGTTAAGATCTGTAAATTTAG
* * * *
81081752 TCTGTTACCCTACTGCTTAGGGTTTTAAGACTCATCATCTTCAATCTGCTTCCCTACTGCTTAGG
1 CCTGTTACCCTACTGCTTAGGGGTTTAAGACTCATCACCTTCAATCTGTTTCCCTACTGCTTAGG
* *
81081817 GGGTTGAGGTCTGTAAATTTAG
66 GGGTTAAGATCTGTAAATTTAG
* * *
81081839 CCTGTTACCCTACTGCTTAGGGGTTTAAGACTCATCATCTTCAATCTGTTTCCTTACTGCTTAAG
1 CCTGTTACCCTACTGCTTAGGGGTTTAAGACTCATCACCTTCAATCTGTTTCCCTACTGCTTAGG
*
81081904 GGGTTGAGATCTGTAAAT
66 GGGTTAAGATCTGTAAAT
81081922 CTTCAATCTG
Statistics
Matches: 229, Mismatches: 27, Indels: 3
0.88 0.10 0.01
Matches are distributed among these distances:
87 166 0.72
88 63 0.28
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.37
Consensus pattern (87 bp):
CCTGTTACCCTACTGCTTAGGGGTTTAAGACTCATCACCTTCAATCTGTTTCCCTACTGCTTAGG
GGGTTAAGATCTGTAAATTTAG
Found at i:81082071 original size:43 final size:42
Alignment explanation
Indices: 81082022--81082176 Score: 141
Period size: 44 Copynumber: 3.6 Consensus size: 42
81082012 TTTCAGCCTA
* * *
81082022 TTACCCTACTACTTAGGGGGTTAAGGTCTGTAAATTTGGCTTG
1 TTACCCTACTGCTTAGGGGGTTAAGATCT-TAAATTTAGCTTG
* * * *
81082065 TTACCCTACTGCTTAGGGGGTTAAAGCTCATT-ATTTTCGATCTG
1 TTACCCTACTGCTTAGGGGGTT-AAGATC-TTAAATTTAGCT-TG
* * * * *
81082109 TTTCCCTACTGCTTAGGGTGATAAGATCTATGAACTTCAGCTTG
1 TTACCCTACTGCTTAGGGGGTTAAGATCT-T-AAATTTAGCTTG
81082153 TTACCCTACTGCTTAGGGGGTTAA
1 TTACCCTACTGCTTAGGGGGTTAA
81082177 AGCTCGTTGC
Statistics
Matches: 90, Mismatches: 16, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
42 1 0.01
43 33 0.37
44 50 0.56
45 6 0.07
ACGTcount: A:0.21, C:0.19, G:0.23, T:0.37
Consensus pattern (42 bp):
TTACCCTACTGCTTAGGGGGTTAAGATCTTAAATTTAGCTTG
Found at i:81082124 original size:44 final size:44
Alignment explanation
Indices: 81082063--81082211 Score: 149
Period size: 44 Copynumber: 3.4 Consensus size: 44
81082053 AAATTTGGCT
**
81082063 TGTTACCCTACTGCTTAGGGGGTTAAAGCTCATTATTTTCGATC
1 TGTTACCCTACTGCTTAGGGGGTTAAAGCTCATTAACTTCGATC
* * * * * *
81082107 TGTTTCCCTACTGCTTAGGGTGAT-AAGATCTATGAACTTC-AGC
1 TGTTACCCTACTGCTTAGGGGGTTAAAGCTC-ATTAACTTCGATC
* **
81082150 TTGTTACCCTACTGCTTAGGGGGTTAAAGCTCGTTGCCTTCGATC
1 -TGTTACCCTACTGCTTAGGGGGTTAAAGCTCATTAACTTCGATC
* *
81082195 TATTCCCCTACTGCTTA
1 TGTTACCCTACTGCTTA
81082212 TAGGGTAAGA
Statistics
Matches: 82, Mismatches: 19, Indels: 8
0.75 0.17 0.07
Matches are distributed among these distances:
43 7 0.09
44 68 0.83
45 7 0.09
ACGTcount: A:0.19, C:0.23, G:0.20, T:0.37
Consensus pattern (44 bp):
TGTTACCCTACTGCTTAGGGGGTTAAAGCTCATTAACTTCGATC
Found at i:81093103 original size:12 final size:12
Alignment explanation
Indices: 81093079--81093122 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
81093069 GAGAGGGCAT
81093079 ATATAATATAATA
1 ATATAA-ATAATA
81093092 ATATAAATAATA
1 ATATAAATAATA
* *
81093104 GTAAAAATAATA
1 ATATAAATAATA
*
81093116 AAATAAA
1 ATATAAA
81093123 AAAAATAAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
12 20 0.77
13 6 0.23
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (12 bp):
ATATAAATAATA
Found at i:81093580 original size:38 final size:38
Alignment explanation
Indices: 81093538--81093620 Score: 130
Period size: 38 Copynumber: 2.2 Consensus size: 38
81093528 TGGGGTGATT
* ** *
81093538 TAGGTGGCTAAGGTGGTTGGCCAATAAGGGTGGTGGAG
1 TAGGTGGCTAAGGTGGGTGGCCAATAAGAATAGTGGAG
81093576 TAGGTGGCTAAGGTGGGTGGCCAATAAGAATAGTGGAG
1 TAGGTGGCTAAGGTGGGTGGCCAATAAGAATAGTGGAG
81093614 TAGGTGG
1 TAGGTGG
81093621 GATTAGAGTT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.24, C:0.07, G:0.46, T:0.23
Consensus pattern (38 bp):
TAGGTGGCTAAGGTGGGTGGCCAATAAGAATAGTGGAG
Found at i:81097926 original size:16 final size:17
Alignment explanation
Indices: 81097905--81097939 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
81097895 TTATGTAACT
*
81097905 TATTATTTTAT-TTATA
1 TATTATGTTATGTTATA
81097921 TATTATGTTATGTTATA
1 TATTATGTTATGTTATA
81097938 TA
1 TA
81097940 AAGATTAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (17 bp):
TATTATGTTATGTTATA
Found at i:81109362 original size:6 final size:6
Alignment explanation
Indices: 81109351--81109379 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
81109341 GGTTTCTAAA
81109351 AAATGG AAATGG AAATGG AAATGG AAATG
1 AAATGG AAATGG AAATGG AAATGG AAATG
81109380 ATCCATTTGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.31, T:0.17
Consensus pattern (6 bp):
AAATGG
Found at i:81109568 original size:26 final size:26
Alignment explanation
Indices: 81109539--81109598 Score: 93
Period size: 26 Copynumber: 2.3 Consensus size: 26
81109529 TTTTACCAGA
81109539 GGTAAAATCGTCAAAAATTCACCAAG
1 GGTAAAATCGTCAAAAATTCACCAAG
* * *
81109565 GGTAAAATTGTCAAAATTTTACCAAG
1 GGTAAAATCGTCAAAAATTCACCAAG
81109591 GGTAAAAT
1 GGTAAAAT
81109599 AGGGATGAGA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.45, C:0.13, G:0.17, T:0.25
Consensus pattern (26 bp):
GGTAAAATCGTCAAAAATTCACCAAG
Found at i:81110780 original size:16 final size:16
Alignment explanation
Indices: 81110759--81110789 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
81110749 TTCACTATTA
*
81110759 TGTCTTTTGTATTTTC
1 TGTCTTTTATATTTTC
81110775 TGTCTTTTATATTTT
1 TGTCTTTTATATTTT
81110790 GCATGCATAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.10, C:0.10, G:0.10, T:0.71
Consensus pattern (16 bp):
TGTCTTTTATATTTTC
Found at i:81112115 original size:12 final size:12
Alignment explanation
Indices: 81112098--81112131 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
81112088 CGGCCCGTCC
81112098 ATATTAATTTTT
1 ATATTAATTTTT
*
81112110 ATATTATTTTTT
1 ATATTAATTTTT
81112122 ATA-TAATTTT
1 ATATTAATTTT
81112132 GAAATATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 6 0.30
12 14 0.70
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:81112285 original size:34 final size:33
Alignment explanation
Indices: 81112247--81112317 Score: 85
Period size: 30 Copynumber: 2.2 Consensus size: 33
81112237 TAAATGCAAT
81112247 TTAACAAGCAAATGTCTCTAAAATAAAAACAAAA
1 TTAACAA-CAAATGTCTCTAAAATAAAAACAAAA
* * *
81112281 TT---AACAAATGTCTTTAAACTAATAACAAAA
1 TTAACAACAAATGTCTCTAAAATAAAAACAAAA
81112311 TTAACAA
1 TTAACAA
81112318 TAAAATAAGT
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
30 25 0.81
31 2 0.06
33 2 0.06
34 2 0.06
ACGTcount: A:0.56, C:0.14, G:0.04, T:0.25
Consensus pattern (33 bp):
TTAACAACAAATGTCTCTAAAATAAAAACAAAA
Found at i:81112289 original size:30 final size:30
Alignment explanation
Indices: 81112255--81112317 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
81112245 ATTTAACAAG
81112255 CAAATGTCTCTAAAATAAAAACAAAATTAA
1 CAAATGTCTCTAAAATAAAAACAAAATTAA
* * *
81112285 CAAATGTCTTTAAACTAATAACAAAATTAA
1 CAAATGTCTCTAAAATAAAAACAAAATTAA
81112315 CAA
1 CAA
81112318 TAAAATAAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.57, C:0.14, G:0.03, T:0.25
Consensus pattern (30 bp):
CAAATGTCTCTAAAATAAAAACAAAATTAA
Found at i:81119383 original size:92 final size:92
Alignment explanation
Indices: 81119272--81119441 Score: 313
Period size: 92 Copynumber: 1.8 Consensus size: 92
81119262 GCCCCTAAGT
* *
81119272 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
81119337 CGAGTTCGGATGCCTAGTTACATTCAC
66 CGAGTTCGGATGCCTAGTTACATTCAC
*
81119364 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
81119429 CGAGTTCGGATGC
66 CGAGTTCGGATGC
81119442 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
92 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTCAC
Found at i:81119438 original size:46 final size:46
Alignment explanation
Indices: 81119267--81119438 Score: 217
Period size: 46 Copynumber: 3.7 Consensus size: 46
81119257 AACCCGCCCC
* * *
81119267 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
81119313 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CTAGTTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--TCCA
* *
81119359 TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
81119405 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
81119439 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 95 0.88
47 2 0.02
48 4 0.04
49 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:81119457 original size:46 final size:46
Alignment explanation
Indices: 81119269--81119457 Score: 151
Period size: 46 Copynumber: 4.1 Consensus size: 46
81119259 CCCGCCCCTA
* ** * *
81119269 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTC--GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCC-T
*
81119314 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATTC-
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCCT
* * * * *
81119362 A-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATCCT
81119407 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
81119453 AGTGA
1 AGTGA
81119458 CATGTCACTT
Statistics
Matches: 116, Mismatches: 13, Indels: 28
0.74 0.08 0.18
Matches are distributed among these distances:
44 9 0.08
45 2 0.02
46 95 0.82
47 1 0.01
48 4 0.03
49 1 0.01
50 4 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
Found at i:81126455 original size:93 final size:93
Alignment explanation
Indices: 81126348--81126518 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
81126338 GCCCCTAAGT
* *
81126348 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
81126413 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
81126441 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
81126506 CGAGTTCGGATGC
66 CGAGTTCGGATGC
81126519 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:81126515 original size:46 final size:46
Alignment explanation
Indices: 81126343--81126515 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
81126333 AACCCGCCCC
* * *
81126343 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
81126389 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
81126437 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
81126482 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
81126516 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 61 0.57
47 29 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:81131594 original size:21 final size:21
Alignment explanation
Indices: 81131569--81131639 Score: 61
Period size: 21 Copynumber: 3.2 Consensus size: 21
81131559 TTATGTGTAT
81131569 TTATAAAATTTTAACAAAAAA
1 TTATAAAATTTTAACAAAAAA
* *
81131590 TTATAATATTTAAATCTTAAAAAA
1 TTATAAAATTTTAA-C--AAAAAA
* * *
81131614 TTCTAAAATTATGACAAAAAA
1 TTATAAAATTTTAACAAAAAA
*
81131635 GTATA
1 TTATA
81131640 TTACAAAAAT
Statistics
Matches: 38, Mismatches: 9, Indels: 6
0.72 0.17 0.11
Matches are distributed among these distances:
21 21 0.55
22 1 0.03
23 1 0.03
24 15 0.39
ACGTcount: A:0.56, C:0.06, G:0.03, T:0.35
Consensus pattern (21 bp):
TTATAAAATTTTAACAAAAAA
Found at i:81140648 original size:61 final size:63
Alignment explanation
Indices: 81140548--81140666 Score: 138
Period size: 61 Copynumber: 1.9 Consensus size: 63
81140538 TATGCTCTTA
* * *
81140548 TATGTAGCAGAGTCCGAGTCAACCGAGACCAGTTCAATCTGTTT-TTGATTGTTATAAATCGTG
1 TATGTAGCAGAGTCCGAGTCAACAGAGACCAGATCAATCT-TTTATCGATTGTTATAAATCGTG
* * *
81140611 TATGTAGGAGAGT-C-AGTCAATAGAGACCA-ATCAAATCTTTTATCGGTTGTTATAAA
1 TATGTAGCAGAGTCCGAGTCAACAGAGACCAGATC-AATCTTTTATCGATTGTTATAAA
81140667 CTATGTAGCC
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
60 5 0.10
61 30 0.62
62 1 0.02
63 12 0.25
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.33
Consensus pattern (63 bp):
TATGTAGCAGAGTCCGAGTCAACAGAGACCAGATCAATCTTTTATCGATTGTTATAAATCGTG
Found at i:81141675 original size:14 final size:15
Alignment explanation
Indices: 81141656--81141691 Score: 58
Period size: 14 Copynumber: 2.5 Consensus size: 15
81141646 TGGGCAGTAT
81141656 AAGAAGAAG-AGAAA
1 AAGAAGAAGAAGAAA
81141670 AAGAAGAAGAAGAAA
1 AAGAAGAAGAAGAAA
81141685 AA-AAGAA
1 AAGAAGAA
81141692 ATAGAGATGT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 14 0.67
15 7 0.33
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (15 bp):
AAGAAGAAGAAGAAA
Found at i:81141678 original size:17 final size:17
Alignment explanation
Indices: 81141656--81141691 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
81141646 TGGGCAGTAT
*
81141656 AAGAAGAAGAGAAAAAG
1 AAGAAGAAGAAAAAAAG
81141673 AAGAAGAAGAAAAAAAG
1 AAGAAGAAGAAAAAAAG
81141690 AA
1 AA
81141692 ATAGAGATGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (17 bp):
AAGAAGAAGAAAAAAAG
Found at i:81142063 original size:47 final size:47
Alignment explanation
Indices: 81141965--81142065 Score: 114
Period size: 47 Copynumber: 2.1 Consensus size: 47
81141955 TTGTAATGTT
* **
81141965 GTTGTTGTTTAAATGAAAAACCAACTTATATGATAACTGGTATTGCT
1 GTTGTTGTTGAAATGAAAAACCAACTTATATGATAACTGGTATTGAG
* * * **
81142012 GTTGTTGTTGAAATGGAAAACCAGCTTATGTGATTGCTAGG-ATTGAG
1 GTTGTTGTTGAAATGAAAAACCAACTTATATGATAACT-GGTATTGAG
81142059 GTTGTTG
1 GTTGTTG
81142066 AAATGGAAAA
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
47 43 0.96
48 2 0.04
ACGTcount: A:0.29, C:0.09, G:0.25, T:0.38
Consensus pattern (47 bp):
GTTGTTGTTGAAATGAAAAACCAACTTATATGATAACTGGTATTGAG
Found at i:81146046 original size:21 final size:21
Alignment explanation
Indices: 81145993--81146050 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 21
81145983 CTTAAGACAA
*
81145993 CTTCTTGGTAAGTTGGGGCAG
1 CTTCTTGGTGAGTTGGGGCAG
* *
81146014 CTTGTTGATGAGTTGGGGCTA-
1 CTTCTTGGTGAGTTGGGGC-AG
*
81146035 TTTCTTGGTGAGTTGG
1 CTTCTTGGTGAGTTGG
81146051 TGTAACACCC
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
21 29 0.97
22 1 0.03
ACGTcount: A:0.12, C:0.10, G:0.38, T:0.40
Consensus pattern (21 bp):
CTTCTTGGTGAGTTGGGGCAG
Found at i:81150724 original size:186 final size:186
Alignment explanation
Indices: 81150377--81150725 Score: 493
Period size: 186 Copynumber: 1.9 Consensus size: 186
81150367 GTAAAGAATG
* * *
81150377 TTTACATTGCAAGAAAGACAACTTACTTCAGTAGATAATCTACATGAGCCCGTAATCCCGTAAAA
1 TTTACATTGCAAGAAAGACAACTTACTTCAGTAGATAATCTAAACGAGCCCGTAATCCCATAAAA
* *
81150442 GAATCAAAGTGAGCATTTGATTCAAATACTGAGAAGGATTATTATGTCATCTAAAATTCTAATTG
66 GAATCAAAGTGAGCATTTGATTCAAATACTGAGAAAGATTATTATGTCATCTAAAATTCCAATTG
* * * *
81150507 GGGAGATGACTAGTCTTGGCTATCAGAGCAGTTGACTCCATGAGTGGAGACATAGA
131 GGAAGATAACTAGTCTTAGCCATCAGAGCAGTTGACTCCATGAGTGGAGACATAGA
* * ** * *
81150563 TTTACATTGCAATAAAGACAACTTATTTTTGTA-ACTAATCTAAACGAGTCTGTAATCCCATAAA
1 TTTACATTGCAAGAAAGACAACTTACTTCAGTAGA-TAATCTAAACGAGCCCGTAATCCCATAAA
* * * *
81150627 AGAATCAAAGTGATCATTTGATTCAAATACTTAGAAAGATTATTATGTCATCTACAATTCCATTT
65 AGAATCAAAGTGAGCATTTGATTCAAATACTGAGAAAGATTATTATGTCATCTAAAATTCCAATT
**
81150692 GGGAAGATAACTAGTCTTAGCCATTGGAGCAGTT
130 GGGAAGATAACTAGTCTTAGCCATCAGAGCAGTT
81150726 AACTGCACAG
Statistics
Matches: 141, Mismatches: 21, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
185 1 0.01
186 140 0.99
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.31
Consensus pattern (186 bp):
TTTACATTGCAAGAAAGACAACTTACTTCAGTAGATAATCTAAACGAGCCCGTAATCCCATAAAA
GAATCAAAGTGAGCATTTGATTCAAATACTGAGAAAGATTATTATGTCATCTAAAATTCCAATTG
GGAAGATAACTAGTCTTAGCCATCAGAGCAGTTGACTCCATGAGTGGAGACATAGA
Found at i:81151048 original size:19 final size:19
Alignment explanation
Indices: 81151004--81151069 Score: 71
Period size: 19 Copynumber: 3.4 Consensus size: 19
81150994 TACAAAATAA
*
81151004 TCAAAATAATTTTCATAAAT
1 TCAAAATAATTTT-AAAAAT
* *
81151024 TGAAAATAATTTTTAAAAT
1 TCAAAATAATTTTAAAAAT
81151043 TCAAAAT-ATTTATAAAAAT
1 TCAAAATAATTT-TAAAAAT
81151062 TCTAAAAT
1 TC-AAAAT
81151070 TTTTATTTTA
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
18 4 0.10
19 18 0.46
20 17 0.44
ACGTcount: A:0.53, C:0.06, G:0.02, T:0.39
Consensus pattern (19 bp):
TCAAAATAATTTTAAAAAT
Found at i:81151074 original size:20 final size:19
Alignment explanation
Indices: 81151020--81151075 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 19
81151010 TAATTTTCAT
* *
81151020 AAATTGAAAATAATTT-TTA
1 AAATTCAAAAT-ATTTATAA
81151039 AAATTCAAAATATTTATAA
1 AAATTCAAAATATTTATAA
*
81151058 AAATTCTAAAATTTTTAT
1 AAATTC-AAAATATTTAT
81151076 TTTAAAAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
18 4 0.12
19 18 0.56
20 10 0.31
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.43
Consensus pattern (19 bp):
AAATTCAAAATATTTATAA
Found at i:81151136 original size:19 final size:20
Alignment explanation
Indices: 81151045--81151139 Score: 72
Period size: 20 Copynumber: 4.8 Consensus size: 20
81151035 TTTAAAATTC
*
81151045 AAAATATTTATAAAAATTCT
1 AAAATATTTATAAAAAATCT
*
81151065 AAAATTTTTATTTTAAAAAAT-T
1 AAAATATTTA---TAAAAAATCT
* * *
81151087 -ATATTTTTAAAAAAAATCT
1 AAAATATTTATAAAAAATCT
*
81151106 AAAATATATATAAAAAAT-T
1 AAAATATTTATAAAAAATCT
81151125 AAAA-ACTTTATAAAA
1 AAAATA-TTTATAAAA
81151140 CAATGATTTT
Statistics
Matches: 60, Mismatches: 9, Indels: 13
0.73 0.11 0.16
Matches are distributed among these distances:
18 8 0.13
19 14 0.23
20 22 0.37
21 8 0.13
22 1 0.02
23 7 0.12
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (20 bp):
AAAATATTTATAAAAAATCT
Found at i:81151457 original size:21 final size:21
Alignment explanation
Indices: 81151432--81151471 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
81151422 ACCTTAACTA
**
81151432 AAGTTAAAAGTCAAAACTATC
1 AAGTTAAAAAACAAAACTATC
81151453 AAGTTAAAAAACAAAACTA
1 AAGTTAAAAAACAAAACTA
81151472 CGTTGTTTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.60, C:0.12, G:0.07, T:0.20
Consensus pattern (21 bp):
AAGTTAAAAAACAAAACTATC
Found at i:81153084 original size:33 final size:33
Alignment explanation
Indices: 81152941--81153124 Score: 104
Period size: 33 Copynumber: 5.5 Consensus size: 33
81152931 TGTTTTTATG
* * *
81152941 TAAGATCATAGCTGGGCTATGGCA-TTTTAATGA
1 TAAGACCATAGCTGGGCTATGGCACTATGAAT-A
* * * * * *
81152974 AAAGACTATAACTGGGTTATGGCACTTTGAATT
1 TAAGACCATAGCTGGGCTATGGCACTATGAATA
* * * * **
81153007 TAGGACCAT-GGTGGGACCATGGCAGTATTTATAA
1 TAAGACCATAGCTGGG-CTATGGCACTATGAAT-A
* *
81153041 TTAAGACCATAGCTGGGCTATGGCATTCTGACA-A
1 -TAAGACCATAGCTGGGCTATGGCACTATGA-ATA
* * * *
81153075 TAAGACCATAACTGAGTTATGGCACTATGAATG
1 TAAGACCATAGCTGGGCTATGGCACTATGAATA
*
81153108 TAAGACCATGGCTGGGC
1 TAAGACCATAGCTGGGC
81153125 CTTGGCAATG
Statistics
Matches: 108, Mismatches: 36, Indels: 14
0.68 0.23 0.09
Matches are distributed among these distances:
32 5 0.05
33 73 0.68
34 7 0.06
35 17 0.16
36 6 0.06
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (33 bp):
TAAGACCATAGCTGGGCTATGGCACTATGAATA
Found at i:81153086 original size:101 final size:101
Alignment explanation
Indices: 81152906--81153133 Score: 282
Period size: 101 Copynumber: 2.3 Consensus size: 101
81152896 AATTGACGGA
* * * * *
81152906 TAAGACCATGGTTGGACCATGGCAATGTTTTTATGTAAGATCATAGCTGGGCTATGGCATTTTAA
1 TAAGACCATGGTGGGACCATGGCAATATTTTAATGTAAGACCATAGCTGGGCTATGGCATTCTAA
* * * * *
81152971 TGAAAAGACTATAACTGGGTTATGGCACTTTGAATT
66 TCAAAAGACCATAACTGAGTTATGGCACTATGAATG
* * *
81153007 TAGGACCATGGTGGGACCATGGCAGTATTTATAAT-TAAGACCATAGCTGGGCTATGGCATTCTG
1 TAAGACCATGGTGGGACCATGGCAATATTT-TAATGTAAGACCATAGCTGGGCTATGGCATTCTA
81153071 A-CAATAAGACCATAACTGAGTTATGGCACTATGAATG
65 ATCAA-AAGACCATAACTGAGTTATGGCACTATGAATG
*
81153108 TAAGACCATGGCTGGG-CCTTGGCAAT
1 TAAGACCATGG-TGGGACCATGGCAAT
81153134 GCATATGTAC
Statistics
Matches: 108, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
100 2 0.02
101 99 0.92
102 7 0.06
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (101 bp):
TAAGACCATGGTGGGACCATGGCAATATTTTAATGTAAGACCATAGCTGGGCTATGGCATTCTAA
TCAAAAGACCATAACTGAGTTATGGCACTATGAATG
Found at i:81155611 original size:34 final size:32
Alignment explanation
Indices: 81155573--81155636 Score: 94
Period size: 31 Copynumber: 1.9 Consensus size: 32
81155563 AATTTAATTT
81155573 AATATTTATCTTATAGATAAGTATTA-ATTAATAG
1 AATATTTATC-T-T-GATAAGTATTATATTAATAG
81155607 AATATTTATCTTGATAAGTATTATATTAAT
1 AATATTTATCTTGATAAGTATTATATTAAT
81155637 TTAATATTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
31 11 0.38
32 7 0.24
33 1 0.03
34 10 0.34
ACGTcount: A:0.42, C:0.03, G:0.08, T:0.47
Consensus pattern (32 bp):
AATATTTATCTTGATAAGTATTATATTAATAG
Found at i:81156275 original size:24 final size:24
Alignment explanation
Indices: 81156243--81156290 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
81156233 ATAAGAAGTG
81156243 GGACCTTGACCAGTGACCAGGGTT
1 GGACCTTGACCAGTGACCAGGGTT
81156267 GGACCTTGACCAGTGACCAGGGTT
1 GGACCTTGACCAGTGACCAGGGTT
81156291 CTTTCCCTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.21, C:0.25, G:0.33, T:0.21
Consensus pattern (24 bp):
GGACCTTGACCAGTGACCAGGGTT
Found at i:81157765 original size:90 final size:90
Alignment explanation
Indices: 81157661--81157878 Score: 301
Period size: 90 Copynumber: 2.4 Consensus size: 90
81157651 CCAATACAAA
* * * * * * *
81157661 AAACAATTTAATACAAACAAATTCATTTTTGTCTTGCACATGTCATTCACTTTAGTGCAAATAAA
1 AAACAATTTAATACAAACAAATTCATTTCTATCATGCACATGCCATACACTTTAATGCAAAGAAA
*
81157726 TCCATTTCTGTCATGTACAATAACC
66 TCCATTTCTGTCAAGTACAATAACC
**
81157751 AAACAATTTAATACAAACAAATTCATTTCTATCATGCACATGCCATACACTTTAATTTAAAGAAA
1 AAACAATTTAATACAAACAAATTCATTTCTATCATGCACATGCCATACACTTTAATGCAAAGAAA
*
81157816 TCCATTTTTGTCAAGTACAATAACC
66 TCCATTTCTGTCAAGTACAATAACC
* ** *
81157841 AAACAATTTAATACAAAAAAATTTGTTTCTGTCATGCA
1 AAACAATTTAATACAAACAAATTCATTTCTATCATGCA
81157879 TATGACAGAC
Statistics
Matches: 113, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
90 113 1.00
ACGTcount: A:0.40, C:0.19, G:0.07, T:0.34
Consensus pattern (90 bp):
AAACAATTTAATACAAACAAATTCATTTCTATCATGCACATGCCATACACTTTAATGCAAAGAAA
TCCATTTCTGTCAAGTACAATAACC
Found at i:81158007 original size:11 final size:11
Alignment explanation
Indices: 81157991--81158036 Score: 56
Period size: 11 Copynumber: 4.2 Consensus size: 11
81157981 AACTGATTTG
*
81157991 TCATATTTGAT
1 TCATATTTGAA
*
81158002 TCATATTTAAA
1 TCATATTTGAA
*
81158013 TCATATTTGAG
1 TCATATTTGAA
*
81158024 TCATATGTGAA
1 TCATATTTGAA
81158035 TC
1 TC
81158037 CAAAGAAACT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 29 1.00
ACGTcount: A:0.33, C:0.11, G:0.11, T:0.46
Consensus pattern (11 bp):
TCATATTTGAA
Found at i:81158036 original size:22 final size:22
Alignment explanation
Indices: 81157991--81158036 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
81157981 AACTGATTTG
* *
81157991 TCATATTTGATTCATATTTAAA
1 TCATATTTGAGTCATATGTAAA
*
81158013 TCATATTTGAGTCATATGTGAA
1 TCATATTTGAGTCATATGTAAA
81158035 TC
1 TC
81158037 CAAAGAAACT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.11, G:0.11, T:0.46
Consensus pattern (22 bp):
TCATATTTGAGTCATATGTAAA
Found at i:81166343 original size:17 final size:18
Alignment explanation
Indices: 81166323--81166358 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
81166313 TAATCTTGTT
81166323 TTAATAAATTAATA-GCA
1 TTAATAAATTAATATGCA
*
81166340 TTAATAATTTAATATGCA
1 TTAATAAATTAATATGCA
81166358 T
1 T
81166359 ATATTTGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.47, C:0.06, G:0.06, T:0.42
Consensus pattern (18 bp):
TTAATAAATTAATATGCA
Found at i:81167559 original size:54 final size:54
Alignment explanation
Indices: 81167477--81167584 Score: 207
Period size: 54 Copynumber: 2.0 Consensus size: 54
81167467 CCTTAGAGCG
81167477 AATGGTCTTATTATACTCGATTTTAACTGGAAAGACCATTGATGTGGGAAAAAT
1 AATGGTCTTATTATACTCGATTTTAACTGGAAAGACCATTGATGTGGGAAAAAT
*
81167531 AATGGTCTTATTATACTCGATTTTAACTGGAAAGACCATTGATGTGGTAAAAAT
1 AATGGTCTTATTATACTCGATTTTAACTGGAAAGACCATTGATGTGGGAAAAAT
81167585 CATCCTGAGA
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.35, C:0.11, G:0.19, T:0.34
Consensus pattern (54 bp):
AATGGTCTTATTATACTCGATTTTAACTGGAAAGACCATTGATGTGGGAAAAAT
Found at i:81174038 original size:129 final size:129
Alignment explanation
Indices: 81173793--81174065 Score: 521
Period size: 129 Copynumber: 2.1 Consensus size: 129
81173783 TGCACATATG
* *
81173793 ATCATATCAATTTGA-GTCATTTTTGAACAATCACATTAACTCATATCATGTCTTTTTCATATAC
1 ATCAAATCAATTTCATGTCATTTTTGAACAATCACATTAACTCATATCATGTCTTTTTCATATAC
81173857 TATGAAACATGTCTAAACATCACTCGTTCAACATCCAAAATCATTTATAATCCAAACCTAAGTA
66 TATGAAACATGTCTAAACATCACTCGTTCAACATCCAAAATCATTTATAATCCAAACCTAAGTA
81173921 ATCAAATCAATTTCATGTCATTTTTGAACAATCACATTAACTCATATCATGTCTTTTTCATATAC
1 ATCAAATCAATTTCATGTCATTTTTGAACAATCACATTAACTCATATCATGTCTTTTTCATATAC
81173986 TATGAAACATGTCTAAACATCACTCGTTCAACATCCAAAATCATTTATAATCCAAACCTAAGTA
66 TATGAAACATGTCTAAACATCACTCGTTCAACATCCAAAATCATTTATAATCCAAACCTAAGTA
81174050 ATCAAATCAATTTCAT
1 ATCAAATCAATTTCAT
81174066 ACACATATAA
Statistics
Matches: 142, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
128 13 0.09
129 129 0.91
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.35
Consensus pattern (129 bp):
ATCAAATCAATTTCATGTCATTTTTGAACAATCACATTAACTCATATCATGTCTTTTTCATATAC
TATGAAACATGTCTAAACATCACTCGTTCAACATCCAAAATCATTTATAATCCAAACCTAAGTA
Found at i:81174914 original size:42 final size:43
Alignment explanation
Indices: 81174857--81174982 Score: 139
Period size: 42 Copynumber: 2.9 Consensus size: 43
81174847 AAAGCTCGTA
*
81174857 CAATGTCAACGTCCCAGACGTGGTCTTACATGAAATCA-A-AT
1 CAATGCCAACGTCCCAGACGTGGTCTTACATGAAATCACAGAT
* * * * *
81174898 ACAATGCCGATGTCCCAGACATGGTTTTACACGTAAATCACAGAT
1 -CAATGCCAACGTCCCAGACGTGGTCTTACATG-AAATCACAGAT
** *
81174943 TGATGCCAACGTCCCAGACGTGGTCTTACATGAAAACACA
1 CAATGCCAACGTCCCAGACGTGGTCTTACATGAAATCACA
81174983 TATCGAAATC
Statistics
Matches: 67, Mismatches: 14, Indels: 5
0.78 0.16 0.06
Matches are distributed among these distances:
42 26 0.39
43 13 0.19
44 26 0.39
45 2 0.03
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.23
Consensus pattern (43 bp):
CAATGCCAACGTCCCAGACGTGGTCTTACATGAAATCACAGAT
Found at i:81186361 original size:32 final size:30
Alignment explanation
Indices: 81186279--81186369 Score: 96
Period size: 32 Copynumber: 3.0 Consensus size: 30
81186269 CCCTAAAATG
*
81186279 TTAATCCCAA-TC-GATTTTCTTTTCTTCTTC
1 TTAATCCCAATTCATATTTTC-TTTCTT-TTC
*
81186309 TTAATCCCAATTGATATTTTCTTTCTTTTCC
1 TTAATCCCAATTCATATTTTCTTTCTTTT-C
* *
81186340 TTAATCCCTAATTCATCTTTTCTTTTTTTT
1 TTAATCCC-AATTCATATTTTCTTTCTTTT
81186370 TCCCTCTAAA
Statistics
Matches: 52, Mismatches: 5, Indels: 6
0.83 0.08 0.10
Matches are distributed among these distances:
30 12 0.23
31 16 0.31
32 24 0.46
ACGTcount: A:0.18, C:0.23, G:0.02, T:0.57
Consensus pattern (30 bp):
TTAATCCCAATTCATATTTTCTTTCTTTTC
Found at i:81186448 original size:21 final size:20
Alignment explanation
Indices: 81186416--81186458 Score: 50
Period size: 21 Copynumber: 2.1 Consensus size: 20
81186406 TCCTCATCCA
**
81186416 ATATAGCAAGTTAGTTGGCC
1 ATATAGCAAGTTAACTGGCC
*
81186436 ATATCAGCTAGTTAACTGGCC
1 ATAT-AGCAAGTTAACTGGCC
81186457 AT
1 AT
81186459 GTCACTTGTC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (20 bp):
ATATAGCAAGTTAACTGGCC
Found at i:81186928 original size:15 final size:15
Alignment explanation
Indices: 81186908--81186937 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
81186898 TTTAATCATT
*
81186908 TATAAATTATAAAAA
1 TATAAACTATAAAAA
81186923 TATAAACTATAAAAA
1 TATAAACTATAAAAA
81186938 ATTATAATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (15 bp):
TATAAACTATAAAAA
Found at i:81193565 original size:17 final size:17
Alignment explanation
Indices: 81193539--81193571 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
81193529 ACTAGACCTT
81193539 TTATAAAACAACTTAAG
1 TTATAAAACAACTTAAG
*
81193556 TTATAGAACAACTTAA
1 TTATAAAACAACTTAA
81193572 TGGTTGTTCC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.52, C:0.12, G:0.06, T:0.30
Consensus pattern (17 bp):
TTATAAAACAACTTAAG
Found at i:81203837 original size:23 final size:22
Alignment explanation
Indices: 81203810--81203873 Score: 67
Period size: 23 Copynumber: 2.8 Consensus size: 22
81203800 TGAAAATTCG
81203810 AAATAGAAATAAAAATAAAAGAA
1 AAATA-AAATAAAAATAAAAGAA
*
81203833 AAATAAAA-ACAAAAGGAAAAGAA
1 AAATAAAATA-AAAA-TAAAAGAA
* *
81203856 AAATAAAGTAGAAATAAA
1 AAATAAAATAAAAATAAA
81203874 TGGACTCAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
21 1 0.03
22 10 0.29
23 22 0.65
24 1 0.03
ACGTcount: A:0.77, C:0.02, G:0.11, T:0.11
Consensus pattern (22 bp):
AAATAAAATAAAAATAAAAGAA
Found at i:81203838 original size:17 final size:17
Alignment explanation
Indices: 81203816--81203862 Score: 67
Period size: 17 Copynumber: 2.8 Consensus size: 17
81203806 TTCGAAATAG
81203816 AAATAAAAATAAAAGAA
1 AAATAAAAATAAAAGAA
* *
81203833 AAATAAAAACAAAAGGA
1 AAATAAAAATAAAAGAA
*
81203850 AAAGAAAAATAAA
1 AAATAAAAATAAA
81203863 GTAGAAATAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.81, C:0.02, G:0.09, T:0.09
Consensus pattern (17 bp):
AAATAAAAATAAAAGAA
Found at i:81207704 original size:40 final size:40
Alignment explanation
Indices: 81207660--81207740 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
81207650 ATATTTAGAG
*
81207660 ATATTACCTGTTCGTTTGCATTTATCACAAGAAGTAACAT
1 ATATTACCTGTTCGTTGGCATTTATCACAAGAAGTAACAT
81207700 ATATTACCTGTTCGTTGGCATTTATCACAAGAAGTAACAT
1 ATATTACCTGTTCGTTGGCATTTATCACAAGAAGTAACAT
81207740 A
1 A
81207741 CCTGTTGGCG
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36
Consensus pattern (40 bp):
ATATTACCTGTTCGTTGGCATTTATCACAAGAAGTAACAT
Found at i:81214760 original size:87 final size:86
Alignment explanation
Indices: 81214611--81214775 Score: 210
Period size: 87 Copynumber: 1.9 Consensus size: 86
81214601 AAATTTAAAT
* * * *
81214611 TTGGTGAATTCATAAAGCCTGTCTCACTAGTACCACCCAAACTCTGGGATATGAACTCATTAAGA
1 TTGGTGAATTCATAAAGCCTGTCTCAATAGGACCACCCAAACCCTGGCATATGAACTCATTAAGA
81214676 GTAATAAACTCAACCTCACATG
66 GTAA-AAACTCAACCTCACATG
* *
81214698 TTGGTGAATTCATCAAGTCC-GTCTCAATAGGACCACCTAAACCCT-GCATTATGAA-TCTATTA
1 TTGGTGAATTCATAAAG-CCTGTCTCAATAGGACCACCCAAACCCTGGCA-TATGAACTC-ATTA
*
81214760 AGAGTAAGAACTCAAC
63 AGAGTAAAAACTCAAC
81214776 TTTATGCATG
Statistics
Matches: 68, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
86 12 0.18
87 54 0.79
88 2 0.03
ACGTcount: A:0.35, C:0.24, G:0.15, T:0.27
Consensus pattern (86 bp):
TTGGTGAATTCATAAAGCCTGTCTCAATAGGACCACCCAAACCCTGGCATATGAACTCATTAAGA
GTAAAAACTCAACCTCACATG
Found at i:81218719 original size:28 final size:28
Alignment explanation
Indices: 81218679--81218735 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
81218669 CCCTTTTATG
81218679 CGCACACCTACACAACATAACATAGCAC
1 CGCACACCTACACAACATAACATAGCAC
81218707 CGCACACCTACACAACATAACATAGCAC
1 CGCACACCTACACAACATAACATAGCAC
81218735 C
1 C
81218736 AATCCAAGCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.42, C:0.40, G:0.07, T:0.11
Consensus pattern (28 bp):
CGCACACCTACACAACATAACATAGCAC
Done.