Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 235 of 295
Found at i:81219433 original size:163 final size:163
Alignment explanation
Indices: 81219163--81219461 Score: 598
Period size: 163 Copynumber: 1.8 Consensus size: 163
81219153 TAAGTTCTAT
81219163 AAAATTGGCATAAATGTTATTAAAATCTTATAGTCATAAATCACTTAATCACAACCTTACCAAGG
1 AAAATTGGCATAAATGTTATTAAAATCTTATAGTCATAAATCACTTAATCACAACCTTACCAAGG
81219228 GATTCATCATATATCGAGCTCATTACGTATGAGTTTTACGTACATACCTGTACCAACTTGCAACA
66 GATTCATCATATATCGAGCTCATTACGTATGAGTTTTACGTACATACCTGTACCAACTTGCAACA
81219293 TAACCACACATTTAACATGCAATTAACATGATG
131 TAACCACACATTTAACATGCAATTAACATGATG
81219326 AAAATTGGCATAAATGTTATTAAAATCTTATAGTCATAAATCACTTAATCACAACCTTACCAAGG
1 AAAATTGGCATAAATGTTATTAAAATCTTATAGTCATAAATCACTTAATCACAACCTTACCAAGG
81219391 GATTCATCATATATCGAGCTCATTACGTATGAGTTTTACGTACATACCTGTACCAACTTGCAACA
66 GATTCATCATATATCGAGCTCATTACGTATGAGTTTTACGTACATACCTGTACCAACTTGCAACA
81219456 TAACCA
131 TAACCA
81219462 TAGTCTTTCT
Statistics
Matches: 136, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
163 136 1.00
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.31
Consensus pattern (163 bp):
AAAATTGGCATAAATGTTATTAAAATCTTATAGTCATAAATCACTTAATCACAACCTTACCAAGG
GATTCATCATATATCGAGCTCATTACGTATGAGTTTTACGTACATACCTGTACCAACTTGCAACA
TAACCACACATTTAACATGCAATTAACATGATG
Found at i:81219866 original size:68 final size:68
Alignment explanation
Indices: 81219757--81219892 Score: 263
Period size: 68 Copynumber: 2.0 Consensus size: 68
81219747 ACACATGGGT
81219757 TCCTAGTGACATGTCACTCGTATCCTATTCTATTCCTAAGGCTCAACCGGGAATTCTCGCTTATC
1 TCCTAGTGACATGTCACTCGTATCCTATTCTATTCCTAAGGCTCAACCGGGAATTCTCGCTTATC
81219822 GAA
66 GAA
*
81219825 TCCTAGTGACATGTCACTCGTATCTTATTCTATTCCTAAGGCTCAACCGGGAATTCTCGCTTATC
1 TCCTAGTGACATGTCACTCGTATCCTATTCTATTCCTAAGGCTCAACCGGGAATTCTCGCTTATC
81219890 GAA
66 GAA
81219893 ACTTTGTCGA
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
68 67 1.00
ACGTcount: A:0.24, C:0.27, G:0.16, T:0.33
Consensus pattern (68 bp):
TCCTAGTGACATGTCACTCGTATCCTATTCTATTCCTAAGGCTCAACCGGGAATTCTCGCTTATC
GAA
Found at i:81220458 original size:45 final size:45
Alignment explanation
Indices: 81220402--81220491 Score: 153
Period size: 45 Copynumber: 2.0 Consensus size: 45
81220392 TTTCCGCCAT
* **
81220402 TAGGTATCAAAATATGCAAATATCTATCATGGGTAAAAATTTAGA
1 TAGGCATCAAAATACACAAATATCTATCATGGGTAAAAATTTAGA
81220447 TAGGCATCAAAATACACAAATATCTATCATGGGTAAAAATTTAGA
1 TAGGCATCAAAATACACAAATATCTATCATGGGTAAAAATTTAGA
81220492 CTTTGATTAT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.46, C:0.11, G:0.14, T:0.29
Consensus pattern (45 bp):
TAGGCATCAAAATACACAAATATCTATCATGGGTAAAAATTTAGA
Found at i:81225295 original size:23 final size:23
Alignment explanation
Indices: 81225252--81225297 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
81225242 CAGTAAAAAG
* **
81225252 TGGTTTGTAATTGTTGGAAATAA
1 TGGTTTGTAATTGCTAAAAATAA
81225275 TGGTTTGTAATTGCTAAAAATAA
1 TGGTTTGTAATTGCTAAAAATAA
81225298 ATTTACATTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.35, C:0.02, G:0.22, T:0.41
Consensus pattern (23 bp):
TGGTTTGTAATTGCTAAAAATAA
Found at i:81235102 original size:9 final size:9
Alignment explanation
Indices: 81235088--81235163 Score: 71
Period size: 9 Copynumber: 8.1 Consensus size: 9
81235078 TTTAAGGAAA
*
81235088 TTATGTGAG
1 TTATGTAAG
81235097 TTATGTAAGTTG
1 TTATGTAA---G
*
81235109 TTATGTAAA
1 TTATGTAAG
81235118 TTATGTAAG
1 TTATGTAAG
* *
81235127 TTATATGAG
1 TTATGTAAG
81235136 TTATGTAAG
1 TTATGTAAG
*
81235145 TTATGTAAT
1 TTATGTAAG
*
81235154 TTATTTAAG
1 TTATGTAAG
81235163 T
1 T
81235164 AATGATCAAT
Statistics
Matches: 54, Mismatches: 10, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
9 45 0.83
12 9 0.17
ACGTcount: A:0.32, C:0.00, G:0.20, T:0.49
Consensus pattern (9 bp):
TTATGTAAG
Found at i:81238703 original size:84 final size:84
Alignment explanation
Indices: 81238555--81238819 Score: 270
Period size: 84 Copynumber: 3.2 Consensus size: 84
81238545 GCATTTTTAG
* *
81238555 GATAGCGCCACTAATTCCTAAACCGTGCCACATAAAATGACGTAGTTTTAATTCAGTTTCTCATA
1 GATAGCGCCACTAATTCCTAAACCGCGCCACATAAAACGACGTAGTTTTAATTCAGTTTCTCATA
*
81238620 TTCTTAGTGGCGTTTATAA
66 TTATTAGTGGCGTTTATAA
* * * * *
81238639 GGTAGCGCCACTAATTCCTAAATCGCGCCACATAAAACGATGTAGTTTTCATTC-GATTTTTCAT
1 GATAGCGCCACTAATTCCTAAACCGCGCCACATAAAACGACGTAGTTTTAATTCAG-TTTCTCAT
81238703 ATTATTAGTGGCGTTTATAA
65 ATTATTAGTGGCGTTTATAA
* * * * * * * * *
81238723 GATAGCACCACTAAATCC-ACTACC-CGCGAAATAAAACGACG-ATGTTTCAATACAATTTCTTA
1 GATAGCGCCACTAATTCCTA-AACCGCGCCACATAAAACGACGTA-GTTTTAATTCAGTTTCTCA
* *
81238785 TACTT-TTAGCGGCGTTTATGA
64 TA-TTATTAGTGGCGTTTATAA
**
81238806 CCTAGCGCCACTAA
1 GATAGCGCCACTAA
81238820 CTCCACTGTC
Statistics
Matches: 149, Mismatches: 27, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
82 1 0.01
83 55 0.37
84 93 0.62
ACGTcount: A:0.31, C:0.22, G:0.15, T:0.32
Consensus pattern (84 bp):
GATAGCGCCACTAATTCCTAAACCGCGCCACATAAAACGACGTAGTTTTAATTCAGTTTCTCATA
TTATTAGTGGCGTTTATAA
Found at i:81239053 original size:28 final size:28
Alignment explanation
Indices: 81239018--81239151 Score: 121
Period size: 28 Copynumber: 4.8 Consensus size: 28
81239008 TATAATTAAT
81239018 CCCAAAA-CCAATACACTAAACCCTAATA
1 CCCAAAACCCAATACACTAAACCCTAA-A
* * * * *
81239046 CCCTAAACCCTAGAGACTAAACCTTAAA
1 CCCAAAACCCAATACACTAAACCCTAAA
* *
81239074 -CCAAATACACAATACCCTAAACCCTAAA
1 CCCAAA-ACCCAATACACTAAACCCTAAA
* * *
81239102 CCCTAAACCCTATAGACTAAACCCTAAA
1 CCCAAAACCCAATACACTAAACCCTAAA
* *
81239130 CCCAATACCCAATTC-CTAAACC
1 CCCAAAACCCAATACACTAAACC
81239152 TTATAAACTA
Statistics
Matches: 81, Mismatches: 22, Indels: 7
0.74 0.20 0.06
Matches are distributed among these distances:
27 11 0.14
28 51 0.63
29 19 0.23
ACGTcount: A:0.45, C:0.37, G:0.02, T:0.16
Consensus pattern (28 bp):
CCCAAAACCCAATACACTAAACCCTAAA
Found at i:81239055 original size:7 final size:7
Alignment explanation
Indices: 81239033--81239192 Score: 80
Period size: 7 Copynumber: 22.9 Consensus size: 7
81239023 AACCAATACA
81239033 CTAAACC
1 CTAAACC
81239040 CTAATACC
1 CTAA-ACC
81239048 CTAAACC
1 CTAAACC
* **
81239055 CTAGAGA
1 CTAAACC
81239062 CTAAACC
1 CTAAACC
*
81239069 TTAAA-C
1 CTAAACC
* *
81239075 CAAATACA
1 CTAA-ACC
81239083 C-AATACC
1 CTAA-ACC
81239090 CTAAACC
1 CTAAACC
81239097 CTAAACC
1 CTAAACC
81239104 CTAAACC
1 CTAAACC
* **
81239111 CTATAGA
1 CTAAACC
81239118 CTAAACC
1 CTAAACC
81239125 CTAAACC
1 CTAAACC
81239132 C-AATACC
1 CTAA-ACC
**
81239139 C-AATTC
1 CTAAACC
81239145 CTAAACC
1 CTAAACC
* *
81239152 TTATAA-A
1 CTA-AACC
**
81239159 CTAAATT
1 CTAAACC
81239166 CTAAA-C
1 CTAAACC
81239172 CTAATACC
1 CTAA-ACC
81239180 CTAAACC
1 CTAAACC
*
81239187 TTAAAC
1 CTAAAC
81239193 TTAAATTTTA
Statistics
Matches: 116, Mismatches: 27, Indels: 20
0.71 0.17 0.12
Matches are distributed among these distances:
6 13 0.11
7 86 0.74
8 17 0.15
ACGTcount: A:0.44, C:0.33, G:0.02, T:0.21
Consensus pattern (7 bp):
CTAAACC
Found at i:81239119 original size:56 final size:56
Alignment explanation
Indices: 81239019--81239151 Score: 182
Period size: 56 Copynumber: 2.4 Consensus size: 56
81239009 ATAATTAATC
* *
81239019 CCAAA-ACCAATACACTAAACCCTAATACCCTAAACCCTAGAGACTAAACCTTAAA
1 CCAAATACCAATACCCTAAACCCTAATACCCTAAACCCTAGAGACTAAACCCTAAA
*
81239074 CCAAATACACAATACCCTAAACCCTAA-ACCCTAAACCCTATAGACTAAACCCTAAA
1 CCAAATAC-CAATACCCTAAACCCTAATACCCTAAACCCTAGAGACTAAACCCTAAA
* *
81239130 CCCAATACCCAAT-TCCTAAACC
1 CCAAATA-CCAATACCCTAAACC
81239152 TTATAAACTA
Statistics
Matches: 70, Mismatches: 5, Indels: 6
0.86 0.06 0.07
Matches are distributed among these distances:
55 13 0.19
56 39 0.56
57 18 0.26
ACGTcount: A:0.45, C:0.36, G:0.02, T:0.17
Consensus pattern (56 bp):
CCAAATACCAATACCCTAAACCCTAATACCCTAAACCCTAGAGACTAAACCCTAAA
Found at i:81239126 original size:35 final size:35
Alignment explanation
Indices: 81239033--81239132 Score: 103
Period size: 35 Copynumber: 2.8 Consensus size: 35
81239023 AACCAATACA
* * **
81239033 CTAAACCCTAATACCCTAAACCCTAGAGACTAAACC
1 CTAAACCCT-ATACACTAAACCCTAAACCCTAAACC
* **
81239069 TTAAACCAAATACAC-AATACCCTAAACCCTAAACC
1 CTAAACCCTATACACTAA-ACCCTAAACCCTAAACC
*
81239104 CTAAACCCTATAGACTAAACCCTAAACCC
1 CTAAACCCTATACACTAAACCCTAAACCC
81239133 AATACCCAAT
Statistics
Matches: 51, Mismatches: 11, Indels: 5
0.76 0.16 0.07
Matches are distributed among these distances:
34 2 0.04
35 41 0.80
36 8 0.16
ACGTcount: A:0.44, C:0.36, G:0.03, T:0.17
Consensus pattern (35 bp):
CTAAACCCTATACACTAAACCCTAAACCCTAAACC
Found at i:81239150 original size:41 final size:41
Alignment explanation
Indices: 81239103--81239180 Score: 111
Period size: 41 Copynumber: 1.9 Consensus size: 41
81239093 AACCCTAAAC
*
81239103 CCTAAACCCTATAGACTAAACCCTAAACCCAATACCCAATT
1 CCTAAACCCTATAAACTAAACCCTAAACCCAATACCCAATT
* ** *
81239144 CCTAAACCTTATAAACTAAATTCTAAACCTAATACCC
1 CCTAAACCCTATAAACTAAACCCTAAACCCAATACCC
81239181 TAAACCTTAA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 32 1.00
ACGTcount: A:0.42, C:0.33, G:0.01, T:0.23
Consensus pattern (41 bp):
CCTAAACCCTATAAACTAAACCCTAAACCCAATACCCAATT
Found at i:81239614 original size:22 final size:21
Alignment explanation
Indices: 81239574--81239635 Score: 56
Period size: 22 Copynumber: 2.9 Consensus size: 21
81239564 AAAATTTATT
* *
81239574 TTTAAGATTTTGGGGTTTAT-G
1 TTTAAGAGTTT-GGATTTATAG
81239595 ATTTAAGAGTTTAGGATTTATAG
1 -TTTAAGAGTTT-GGATTTATAG
81239618 TTTAAG-GTTTGAGATTTA
1 TTTAAGAGTTTG-GATTTA
81239636 AGGCCTATAG
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
20 1 0.03
21 10 0.29
22 23 0.66
23 1 0.03
ACGTcount: A:0.27, C:0.00, G:0.24, T:0.48
Consensus pattern (21 bp):
TTTAAGAGTTTGGATTTATAG
Found at i:81243808 original size:33 final size:32
Alignment explanation
Indices: 81243751--81243812 Score: 81
Period size: 33 Copynumber: 1.9 Consensus size: 32
81243741 CAAATAACAA
*
81243751 CAACAAAATAGTAGAAATATAATAGTGAAATGG
1 CAACAAAATAGTAGAAATACAATAG-GAAATGG
*
81243784 CAACAAAATAGTGAGGAA-ACAATAGGAAA
1 CAACAAAATAGT-AGAAATACAATAGGAAA
81243813 ACAATAATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
32 4 0.15
33 18 0.69
34 4 0.15
ACGTcount: A:0.56, C:0.08, G:0.19, T:0.16
Consensus pattern (32 bp):
CAACAAAATAGTAGAAATACAATAGGAAATGG
Found at i:81249613 original size:13 final size:13
Alignment explanation
Indices: 81249597--81249638 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
81249587 ATGAAACTAA
81249597 AATATAAAAATAT
1 AATATAAAAATAT
81249610 AATAT----ATAT
1 AATATAAAAATAT
81249619 AATATAAAAATAT
1 AATATAAAAATAT
81249632 AATATAA
1 AATATAA
81249639 TATATATACA
Statistics
Matches: 25, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
9 9 0.36
13 16 0.64
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (13 bp):
AATATAAAAATAT
Found at i:81249622 original size:22 final size:21
Alignment explanation
Indices: 81249597--81249646 Score: 82
Period size: 22 Copynumber: 2.3 Consensus size: 21
81249587 ATGAAACTAA
81249597 AATATAAAAATATAATATATAT
1 AATATAAAAATATAATATA-AT
81249619 AATATAAAAATATAATATAAT
1 AATATAAAAATATAATATAAT
81249640 ATATATA
1 A-ATATA
81249647 CATGCATAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
21 3 0.11
22 24 0.89
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (21 bp):
AATATAAAAATATAATATAAT
Found at i:81250069 original size:19 final size:19
Alignment explanation
Indices: 81250020--81250112 Score: 127
Period size: 19 Copynumber: 4.8 Consensus size: 19
81250010 AAATTAAATC
* *
81250020 TCTAAGATTACAAGATCATA
1 TCTAAGATTGC-ATATCATA
81250040 TCTTCAAGATTGCATATCATA
1 TC-T-AAGATTGCATATCATA
81250061 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
81250080 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
81250097 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
81250113 CTTAAAGATT
Statistics
Matches: 67, Mismatches: 2, Indels: 9
0.86 0.03 0.12
Matches are distributed among these distances:
17 17 0.25
19 30 0.45
20 3 0.04
21 10 0.15
22 7 0.10
ACGTcount: A:0.37, C:0.16, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:81250076 original size:14 final size:15
Alignment explanation
Indices: 81250056--81250112 Score: 53
Period size: 17 Copynumber: 3.5 Consensus size: 15
81250046 AGATTGCATA
81250056 TCATATCTAAGATTG
1 TCATATCTAAGATTG
81250071 CATATCATATCTAAGATTG
1 ----TCATATCTAAGATTG
81250090 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
81250107 -CATATC
1 TCATATC
81250113 CTTAAAGATT
Statistics
Matches: 38, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
14 6 0.16
17 17 0.45
19 15 0.39
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.39
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:81250098 original size:36 final size:39
Alignment explanation
Indices: 81250020--81250112 Score: 129
Period size: 36 Copynumber: 2.4 Consensus size: 39
81250010 AAATTAAATC
* *
81250020 TCTAAGATTACAAGATCATATCTTCAAGATTGCATATCATA
1 TCTAAGATTGC-ATATCATATCTTCAAGATTG-ATATCATA
81250061 TCTAAGATTGCATATCATATC-T-AAGATTG-TATCATA
1 TCTAAGATTGCATATCATATCTTCAAGATTGATATCATA
81250097 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
81250113 CTTAAAGATT
Statistics
Matches: 50, Mismatches: 2, Indels: 5
0.88 0.04 0.09
Matches are distributed among these distances:
36 23 0.46
38 7 0.14
39 1 0.02
40 9 0.18
41 10 0.20
ACGTcount: A:0.37, C:0.16, G:0.11, T:0.37
Consensus pattern (39 bp):
TCTAAGATTGCATATCATATCTTCAAGATTGATATCATA
Found at i:81259633 original size:27 final size:27
Alignment explanation
Indices: 81259599--81259776 Score: 239
Period size: 27 Copynumber: 6.6 Consensus size: 27
81259589 CTAGATTGAT
* *
81259599 AAATGATTATTTTTCCCTCATGAGGTA
1 AAATGATTGTTTTGCCCTCATGAGGTA
81259626 AAATGATTGTTTTGCCCTCATGAGGTA
1 AAATGATTGTTTTGCCCTCATGAGGTA
* * *
81259653 AAATGACTATTTTGCCCTCATGGGGTA
1 AAATGATTGTTTTGCCCTCATGAGGTA
*
81259680 AAATGATTGTTTTGCCCTCACGAGGTA
1 AAATGATTGTTTTGCCCTCATGAGGTA
*
81259707 AAATGAGTGTTTTGCCCTCATGAGGTA
1 AAATGATTGTTTTGCCCTCATGAGGTA
* * * *
81259734 AGATGACTGTTTTGCCCTTATAAGGTA
1 AAATGATTGTTTTGCCCTCATGAGGTA
* *
81259761 AGATGACTGTTTTGCC
1 AAATGATTGTTTTGCC
81259777 TTTTGTGATG
Statistics
Matches: 136, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 136 1.00
ACGTcount: A:0.26, C:0.16, G:0.22, T:0.36
Consensus pattern (27 bp):
AAATGATTGTTTTGCCCTCATGAGGTA
Found at i:81260121 original size:18 final size:18
Alignment explanation
Indices: 81260098--81260142 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
81260088 GACTTGTATT
81260098 CTGTTACTGCACTGATTA
1 CTGTTACTGCACTGATTA
*
81260116 CTGTTACTGCACTGTTTA
1 CTGTTACTGCACTGATTA
*
81260134 TTGTTACTG
1 CTGTTACTG
81260143 TATTGGGCCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.18, C:0.20, G:0.18, T:0.44
Consensus pattern (18 bp):
CTGTTACTGCACTGATTA
Found at i:81263449 original size:54 final size:53
Alignment explanation
Indices: 81263385--81263608 Score: 263
Period size: 54 Copynumber: 4.2 Consensus size: 53
81263375 CCAGATTGAT
*
81263385 AAATGACTATTTTTCCCTCATGAGGTAAAATGATTATTTTGCCC-TAATGAGGTA
1 AAATGACTATTTTTCCCTCATGAGGTAAAATGACTATTTTGCCCTTAAT-A-GTA
* *
81263439 AAATGACTATTTTGCCCTCATGAGGTAAAATGACTGTTTTGCCCTTATATAGTA
1 AAATGACTATTTTTCCCTCATGAGGTAAAATGACTATTTTGCCCTTA-ATAGTA
* * *
81263493 AAATGATTGTTTTTCCCTCATGAGGTAAAATGGCTATTTAT-CCCTTAAATAGTA
1 AAATGACTATTTTTCCCTCATGAGGTAAAATGACTATTT-TGCCCTT-AATAGTA
* ** * * *
81263547 AGATGACTGCTTTACCCTCATGAGGTAAAATGACTGTTTTGCCCTTATATGGTA
1 AAATGACTATTTTTCCCTCATGAGGTAAAATGACTATTTTGCCCTTA-ATAGTA
*
81263601 AGATGACT
1 AAATGACT
81263609 GCTTAGCCCT
Statistics
Matches: 149, Mismatches: 15, Indels: 12
0.85 0.09 0.07
Matches are distributed among these distances:
53 2 0.01
54 140 0.94
55 5 0.03
56 2 0.01
ACGTcount: A:0.30, C:0.16, G:0.17, T:0.37
Consensus pattern (53 bp):
AAATGACTATTTTTCCCTCATGAGGTAAAATGACTATTTTGCCCTTAATAGTA
Found at i:81263609 original size:27 final size:27
Alignment explanation
Indices: 81263385--81263618 Score: 208
Period size: 27 Copynumber: 8.7 Consensus size: 27
81263375 CCAGATTGAT
* *
81263385 AAATGACTATTTTTCCCTCATGAGGTA
1 AAATGACTGTTTTGCCCTCATGAGGTA
* * *
81263412 AAATGATTATTTTGCCCTAATGAGGTA
1 AAATGACTGTTTTGCCCTCATGAGGTA
*
81263439 AAATGACTATTTTGCCCTCATGAGGTA
1 AAATGACTGTTTTGCCCTCATGAGGTA
* *
81263466 AAATGACTGTTTTGCCCTTAT-ATAGTA
1 AAATGACTGTTTTGCCCTCATGA-GGTA
* *
81263493 AAATGATTGTTTTTCCCTCATGAGGTA
1 AAATGACTGTTTTGCCCTCATGAGGTA
* * *
81263520 AAATGGCTATTTAT-CCCTTAAAT-A-GTA
1 AAATGACTGTTT-TGCCC-T-CATGAGGTA
* * *
81263547 AGATGACTGCTTTACCCTCATGAGGTA
1 AAATGACTGTTTTGCCCTCATGAGGTA
*
81263574 AAATGACTGTTTTGCCCTTAT-ATGGTA
1 AAATGACTGTTTTGCCCTCATGA-GGTA
* * *
81263601 AGATGACTGCTTAGCCCT
1 AAATGACTGTTTTGCCCT
81263619 ATGTGATGTA
Statistics
Matches: 170, Mismatches: 28, Indels: 18
0.79 0.13 0.08
Matches are distributed among these distances:
25 2 0.01
26 5 0.03
27 157 0.92
28 4 0.02
29 2 0.01
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36
Consensus pattern (27 bp):
AAATGACTGTTTTGCCCTCATGAGGTA
Found at i:81263985 original size:18 final size:18
Alignment explanation
Indices: 81263946--81263987 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
81263936 TTGTATTCTG
*
81263946 TTACTGCACTGATTACTG
1 TTACTGCACTGATTACTA
*
81263964 TTACTGCACT-ATTTATTA
1 TTACTGCACTGA-TTACTA
81263982 TTACTG
1 TTACTG
81263988 TATTGGGCTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 1 0.05
18 20 0.95
ACGTcount: A:0.24, C:0.19, G:0.12, T:0.45
Consensus pattern (18 bp):
TTACTGCACTGATTACTA
Found at i:81274330 original size:51 final size:50
Alignment explanation
Indices: 81274270--81274457 Score: 209
Period size: 51 Copynumber: 3.7 Consensus size: 50
81274260 TGGCTTGCAT
* * * *
81274270 ATAGTACCACCCTTGTAGT-CAAAGCTACCTTATTCACAAAGTGACCTTTATC
1 ATAGTACCACACTTGT-GTCCAAAGCTA-TTTATTCACAAAGTGGCCTTCA-C
*
81274322 -TAGTACCACACTTGTGTCCAAAGTTATTTTATTCACAAAGTGGCCTTCAC
1 ATAGTACCACACTTGTGTCCAAAGCTA-TTTATTCACAAAGTGGCCTTCAC
* *
81274372 ATAATACCGCACTTGTGTCCAAAGCTATTATATTCACAAAGTGGCCTTCAC
1 ATAGTACCACACTTGTGTCCAAAGCTATT-TATTCACAAAGTGGCCTTCAC
* * * *
81274423 ATAGTACTAGATTTGTTTCCAAAGCTATTTTATTC
1 ATAGTACCACACTTGTGTCCAAAGCTA-TTTATTC
81274458 CTAAGGTTCA
Statistics
Matches: 117, Mismatches: 15, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
50 5 0.04
51 110 0.94
52 2 0.02
ACGTcount: A:0.30, C:0.23, G:0.13, T:0.34
Consensus pattern (50 bp):
ATAGTACCACACTTGTGTCCAAAGCTATTTATTCACAAAGTGGCCTTCAC
Found at i:81274550 original size:28 final size:24
Alignment explanation
Indices: 81274493--81274592 Score: 119
Period size: 24 Copynumber: 4.0 Consensus size: 24
81274483 ACGTAGGACA
81274493 ATGCCATGGACTTATTTCACTTAG
1 ATGCCATGGACTTATTTCACTTAG
*
81274517 ATGCCATGGACTTATTTCATTTAG
1 ATGCCATGGACTTATTTCACTTAG
*
81274541 CACATTGCCATGGACTTATTTCACTTAA
1 ---A-TGCCATGGACTTATTTCACTTAG
* * *
81274569 ATGTCATGGTCTTGTTTCACTTAG
1 ATGCCATGGACTTATTTCACTTAG
81274593 CACAATGTCA
Statistics
Matches: 65, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
24 42 0.65
25 1 0.02
27 1 0.02
28 21 0.32
ACGTcount: A:0.24, C:0.20, G:0.16, T:0.40
Consensus pattern (24 bp):
ATGCCATGGACTTATTTCACTTAG
Found at i:81274550 original size:52 final size:52
Alignment explanation
Indices: 81274494--81274596 Score: 161
Period size: 52 Copynumber: 2.0 Consensus size: 52
81274484 CGTAGGACAA
* *
81274494 TGCCATGGACTTATTTCACTTAGATGCCATGGACTTATTTCATTTAGCACAT
1 TGCCATGGACTTATTTCACTTAAATGCCATGGACTTATTTCACTTAGCACAT
* * *
81274546 TGCCATGGACTTATTTCACTTAAATGTCATGGTCTTGTTTCACTTAGCACA
1 TGCCATGGACTTATTTCACTTAAATGCCATGGACTTATTTCACTTAGCACA
81274597 ATGTCATATC
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
52 46 1.00
ACGTcount: A:0.24, C:0.21, G:0.16, T:0.39
Consensus pattern (52 bp):
TGCCATGGACTTATTTCACTTAAATGCCATGGACTTATTTCACTTAGCACAT
Found at i:81275866 original size:32 final size:30
Alignment explanation
Indices: 81275797--81275866 Score: 79
Period size: 32 Copynumber: 2.3 Consensus size: 30
81275787 TCCTTACATA
81275797 TTGAAAC-TTAGATTATGAAACTATAAACT
1 TTGAAACTTTAGATTATGAAACTATAAACT
* * *
81275826 GTGAAAACTTTAAGATTATGAAAACTATAGATT
1 TTG-AAACTTT-AGATTATG-AAACTATAAACT
81275859 TTGAAACT
1 TTGAAACT
81275867 ATAGTGAAAC
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
29 2 0.06
30 4 0.12
31 2 0.06
32 13 0.39
33 12 0.36
ACGTcount: A:0.44, C:0.09, G:0.13, T:0.34
Consensus pattern (30 bp):
TTGAAACTTTAGATTATGAAACTATAAACT
Found at i:81275867 original size:15 final size:15
Alignment explanation
Indices: 81275798--81275870 Score: 67
Period size: 15 Copynumber: 4.7 Consensus size: 15
81275788 CCTTACATAT
81275798 TGAAACT-TAGATTA
1 TGAAACTATAGATTA
* * *
81275812 TGAAACTATAAACTG
1 TGAAACTATAGATTA
*
81275827 TGAAAACTTTAAGATTA
1 TG-AAACTAT-AGATTA
*
81275844 TGAAAACTATAGATTT
1 TG-AAACTATAGATTA
81275860 TGAAACTATAG
1 TGAAACTATAG
81275871 TGAAACTATG
Statistics
Matches: 47, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
14 7 0.15
15 15 0.32
16 13 0.28
17 12 0.26
ACGTcount: A:0.45, C:0.08, G:0.14, T:0.33
Consensus pattern (15 bp):
TGAAACTATAGATTA
Found at i:81290072 original size:15 final size:15
Alignment explanation
Indices: 81290052--81290092 Score: 73
Period size: 15 Copynumber: 2.7 Consensus size: 15
81290042 ATAATGCTGA
81290052 TTTTGAATTTGAATT
1 TTTTGAATTTGAATT
81290067 TTTTGAATTTGAATT
1 TTTTGAATTTGAATT
*
81290082 TTATGAATTTG
1 TTTTGAATTTG
81290093 TATAAGTAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.27, C:0.00, G:0.15, T:0.59
Consensus pattern (15 bp):
TTTTGAATTTGAATT
Found at i:81292149 original size:22 final size:22
Alignment explanation
Indices: 81292124--81292166 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
81292114 TGATTTGTTT
81292124 TTAA-TGAATGCTTAATATTTAG
1 TTAATTGAATGCTT-ATATTTAG
*
81292146 TTAATTGTATGCTTATATTTA
1 TTAATTGAATGCTTATATTTA
81292167 TATGATTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.33, C:0.05, G:0.12, T:0.51
Consensus pattern (22 bp):
TTAATTGAATGCTTATATTTAG
Found at i:81301544 original size:26 final size:27
Alignment explanation
Indices: 81301500--81301556 Score: 98
Period size: 26 Copynumber: 2.1 Consensus size: 27
81301490 ACAGCTAAGA
*
81301500 AATAGCCTTTGTGGCAAACTCTGAAAG
1 AATAGCCTTTGTGGAAAACTCTGAAAG
81301527 AATAGCC-TTGTGGAAAACTCTGAAAG
1 AATAGCCTTTGTGGAAAACTCTGAAAG
81301553 AATA
1 AATA
81301557 ACTTTTATGG
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 22 0.76
27 7 0.24
ACGTcount: A:0.39, C:0.16, G:0.21, T:0.25
Consensus pattern (27 bp):
AATAGCCTTTGTGGAAAACTCTGAAAG
Found at i:81303137 original size:21 final size:20
Alignment explanation
Indices: 81303111--81303149 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
81303101 GATTATTTTG
81303111 ATGTTTAATGATAGATTATGA
1 ATGTTTAATGATAG-TTATGA
*
81303132 ATGTTTGATGATAGTTAT
1 ATGTTTAATGATAGTTAT
81303150 ACAAGTTTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (20 bp):
ATGTTTAATGATAGTTATGA
Found at i:81303799 original size:48 final size:48
Alignment explanation
Indices: 81303705--81303799 Score: 136
Period size: 48 Copynumber: 2.0 Consensus size: 48
81303695 ATGTCATTAG
* * *
81303705 GATCTTCATTGATTTAGCTTCGGGCCATGATATTAGCACTTTGGGTGT
1 GATCTTCATTGATTTAGCTTCGAGCCATGATATTAGCACCTAGGGTGT
* * *
81303753 GATCTTCATTGATTTGGCTTCGAGCCATGATATTTGCGCCTAGGGTG
1 GATCTTCATTGATTTAGCTTCGAGCCATGATATTAGCACCTAGGGTG
81303800 CAAGACTCCC
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 41 1.00
ACGTcount: A:0.18, C:0.18, G:0.26, T:0.38
Consensus pattern (48 bp):
GATCTTCATTGATTTAGCTTCGAGCCATGATATTAGCACCTAGGGTGT
Found at i:81317614 original size:21 final size:21
Alignment explanation
Indices: 81317590--81317640 Score: 102
Period size: 21 Copynumber: 2.4 Consensus size: 21
81317580 GGGAAGTACC
81317590 AAGATGTACAACGATTTAAAG
1 AAGATGTACAACGATTTAAAG
81317611 AAGATGTACAACGATTTAAAG
1 AAGATGTACAACGATTTAAAG
81317632 AAGATGTAC
1 AAGATGTAC
81317641 TGGTGGAGCG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.47, C:0.10, G:0.20, T:0.24
Consensus pattern (21 bp):
AAGATGTACAACGATTTAAAG
Found at i:81325480 original size:20 final size:20
Alignment explanation
Indices: 81325457--81325496 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
81325447 TAAATGAGTG
*
81325457 TTACAATGAATAAACTATGC
1 TTACAATAAATAAACTATGC
81325477 TTACAATAAATAAACTATGC
1 TTACAATAAATAAACTATGC
81325497 CGTATATGTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.47, C:0.15, G:0.07, T:0.30
Consensus pattern (20 bp):
TTACAATAAATAAACTATGC
Found at i:81326637 original size:38 final size:38
Alignment explanation
Indices: 81326567--81327031 Score: 651
Period size: 38 Copynumber: 12.1 Consensus size: 38
81326557 ATTTGATGTG
*
81326567 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAATA
1 TATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTAATA
* *
81326607 TATCCGGGTTAAATCCCACAGGCTTTGTGCTGGTAATA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
*
81326645 TATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTAATA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
* * * *
81326683 TATCCAGGCTTAAAGACCCGCAGGCTTTGTGCTGGTATTA
1 TATCC-GGGTTAAA-TCCCGCAGGCTTCGTGCTGGTAATA
* *
81326723 TATCCGGGTTAAATCCCGCAGGCTTTGTACTGGTAATA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
81326761 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
*
81326799 TATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTAATA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
* * * * *
81326837 TATCTGGGCTTAAAGACCCGCAGGCTTTGGGCTGGTATTA
1 TATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTAATA
*
81326877 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTGATA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
*
81326915 TATCCGGGTTAAATCCCGTAGGCTTCGTGCTGGTAATA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
* *
81326953 TATCCGGGTTAAATCCTGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
* * * * *
81326991 TATCCGGGTTAAATCCTGCAGGCCTAGTACTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
81327029 TAT
1 TAT
81327032 TCAGGCCTTT
Statistics
Matches: 385, Mismatches: 36, Indels: 10
0.89 0.08 0.02
Matches are distributed among these distances:
38 295 0.77
39 29 0.08
40 61 0.16
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.30
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
Found at i:81326771 original size:116 final size:114
Alignment explanation
Indices: 81326567--81327031 Score: 660
Period size: 116 Copynumber: 4.0 Consensus size: 114
81326557 ATTTGATGTG
*
81326567 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCACAGGCTT
1 TATCC-GGCTTAAA-ACCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTT
*
81326632 TGTGCTGGTAATATATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTAATA
64 TGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
* *
81326683 TATCCAGGCTTAAAGACCCGCAGGCTTTGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTT
1 TATCC-GGCTTAAA-ACCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTT
*
81326748 TGTACTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
64 TGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
* * * * *
81326799 TATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTAATATATCTGGGCTTAAAGACCCGCAGGCTT
1 TATCCGGCTTAAAACCCGCAGGCTTCGTGCTGGTAATATATCCGGG-TTAAA-TCCCGCAGGCTT
* * *
81326864 TGGGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTGATA
64 TGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
* * * * *
81326915 TATCCGGGTTAAATCCCGTAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCTGCAGGCTTCG
1 TATCCGGCTTAAAACCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTTG
* * * * * *
81326980 TGCTGGTATTATATCCGGGTTAAATCCTGCAGGCCTAGTACTGGTATTA
66 TGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
81327029 TAT
1 TAT
81327032 TCAGGCCTTT
Statistics
Matches: 317, Mismatches: 30, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
114 84 0.26
115 17 0.05
116 216 0.68
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.30
Consensus pattern (114 bp):
TATCCGGCTTAAAACCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTTG
TGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
Found at i:81326863 original size:154 final size:154
Alignment explanation
Indices: 81326567--81327031 Score: 736
Period size: 154 Copynumber: 3.0 Consensus size: 154
81326557 ATTTGATGTG
* *
81326567 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCACAGGCTT
1 TATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTT
* *
81326632 TGTGCTGGTAATATATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTAATATATCCAGGCTTAAA
64 CGTGCTGGTAATATATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTAATATATCCGGGCTTAAA
81326697 GACCCGCAGGCTTTGTGCTGGTATTA
129 GACCCGCAGGCTTTGTGCTGGTATTA
* *
81326723 TATCCGGGTTAAATCCCGCAGGCTTTGTACTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCG
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCG
*
81326788 TGCTGGTAATATATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTAATATATCTGGGCTTAAAGA
66 TGCTGGTAATATATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTAATATATCCGGGCTTAAAGA
*
81326853 CCCGCAGGCTTTGGGCTGGTATTA
131 CCCGCAGGCTTTGTGCTGGTATTA
* *
81326877 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTGATATATCCGGGTTAAATCCCGTAGGCTTCG
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCG
** * *
81326942 TGCTGGTAATATATCCGGGTTAAATCCTGCAGGCTTCGTGCTGGTATTATATCCGGG-TTAAA-T
66 TGCTGGTAATATATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTAATATATCCGGGCTTAAAGA
* * * *
81327005 CCTGCAGGCCTAGTACTGGTATTA
131 CCCGCAGGCTTTGTGCTGGTATTA
81327029 TAT
1 TAT
81327032 TCAGGCCTTT
Statistics
Matches: 287, Mismatches: 22, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
152 22 0.08
153 5 0.02
154 247 0.86
155 5 0.02
156 8 0.03
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.30
Consensus pattern (154 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCG
TGCTGGTAATATATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTAATATATCCGGGCTTAAAGA
CCCGCAGGCTTTGTGCTGGTATTA
Found at i:81327084 original size:45 final size:45
Alignment explanation
Indices: 81327028--81327142 Score: 155
Period size: 45 Copynumber: 2.6 Consensus size: 45
81327018 TACTGGTATT
* * *
81327028 ATATTCAGGCCTTTGAGCCTAGCAGGCTATTATGCCGATGAGAT-
1 ATATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGATGACATG
*
81327072 ACTATTCGGGCCTTTGAGCCTAGTAGGCTATAATGCCGATGACATG
1 A-TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGATGACATG
*
81327118 ATA-TCGAGCC-TTGAGCCTAGCAGGC
1 ATATTCGGGCCTTTGAGCCTAGCAGGC
81327143 GAAATACCGG
Statistics
Matches: 63, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
43 14 0.22
44 7 0.11
45 41 0.65
46 1 0.02
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (45 bp):
ATATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGATGACATG
Found at i:81328144 original size:21 final size:20
Alignment explanation
Indices: 81328102--81328148 Score: 58
Period size: 21 Copynumber: 2.3 Consensus size: 20
81328092 GTATCGATTC
* **
81328102 GGTATCGATACTTTTCTTAA
1 GGTATCGATAATTTTCCAAA
81328122 GGTATCGATAAATTTTCCAAA
1 GGTATCGAT-AATTTTCCAAA
81328143 GGTATC
1 GGTATC
81328149 AATATTCTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 9 0.39
21 14 0.61
ACGTcount: A:0.30, C:0.15, G:0.17, T:0.38
Consensus pattern (20 bp):
GGTATCGATAATTTTCCAAA
Found at i:81328591 original size:38 final size:39
Alignment explanation
Indices: 81328549--81328639 Score: 100
Period size: 38 Copynumber: 2.4 Consensus size: 39
81328539 TTGTTTTTCT
81328549 TTAAGAGAGGGTT-TATTCTTAAG-GTTT-GGGTAAAAATC
1 TTAAGAGA-GGTTGTA-TCTTAAGAGTTTGGGGTAAAAATC
* * *
81328587 TTAAGAGA-GTTGTATCTTAAGATTTTGGGGTATAAGTC
1 TTAAGAGAGGTTGTATCTTAAGAGTTTGGGGTAAAAATC
*
81328625 TTAAGAGAGATTGTA
1 TTAAGAGAGGTTGTA
81328640 AGGTTAAACA
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
36 10 0.22
37 5 0.11
38 25 0.56
39 5 0.11
ACGTcount: A:0.32, C:0.04, G:0.26, T:0.37
Consensus pattern (39 bp):
TTAAGAGAGGTTGTATCTTAAGAGTTTGGGGTAAAAATC
Found at i:81333317 original size:44 final size:44
Alignment explanation
Indices: 81333252--81333338 Score: 106
Period size: 44 Copynumber: 2.0 Consensus size: 44
81333242 TTGATATTTC
* *
81333252 AAAGTCCATGATTGTACCATGGCAATTAA-GAAAGAATTGACGGA
1 AAAGTCCATGATTATAACATGGCAATTAATG-AAGAATTGACGGA
* *
81333296 AAAGTCCATG-TTCATAACATGGCATTTAATGAGGAATTGACGG
1 AAAGTCCATGATT-ATAACATGGCAATTAATGAAGAATTGACGG
81333339 TTAAGGATAC
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
43 2 0.05
44 34 0.92
45 1 0.03
ACGTcount: A:0.38, C:0.14, G:0.23, T:0.25
Consensus pattern (44 bp):
AAAGTCCATGATTATAACATGGCAATTAATGAAGAATTGACGGA
Found at i:81333494 original size:47 final size:47
Alignment explanation
Indices: 81333441--81333538 Score: 178
Period size: 47 Copynumber: 2.1 Consensus size: 47
81333431 AGACAAGGAT
81333441 ACCATGTTTGGAACATGGCATTTGGTAAGACAAGGATACCATGTAAG
1 ACCATGTTTGGAACATGGCATTTGGTAAGACAAGGATACCATGTAAG
* *
81333488 ACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCATGTAAG
1 ACCATGTTTGGAACATGGCATTTGGTAAGACAAGGATACCATGTAAG
81333535 ACCA
1 ACCA
81333539 CACCAAGACA
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 49 1.00
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (47 bp):
ACCATGTTTGGAACATGGCATTTGGTAAGACAAGGATACCATGTAAG
Found at i:81333717 original size:53 final size:54
Alignment explanation
Indices: 81333519--81333823 Score: 357
Period size: 55 Copynumber: 5.6 Consensus size: 54
81333509 TTGGTAAGAT
* ** * *
81333519 AAGGATATCATGTAAGACCACACCAAGACATAGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* * * * *
81333573 AAGGAAATCATGTAAGATCATGTCAAGACATGGCATTGATGAGTTACTATACGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGC
* * * *
81333628 AAAGG-TCCCATGTAAGATCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* *
81333681 AAGGATACCATGTAAGACCATGTCAAGACATCGCATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGC
* * *
81333736 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* *
81333789 AAGGATACCACGTAAGACCATGTCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCA
81333824 ATGGTAATTT
Statistics
Matches: 214, Mismatches: 30, Indels: 15
0.83 0.12 0.06
Matches are distributed among these distances:
52 8 0.04
53 73 0.34
54 41 0.19
55 84 0.39
56 8 0.04
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
Found at i:81333717 original size:108 final size:108
Alignment explanation
Indices: 81333527--81333819 Score: 460
Period size: 108 Copynumber: 2.7 Consensus size: 108
81333517 ATAAGGATAT
** * * * * * * *
81333527 CATGTAAGACCACACCAAGACATAGCATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGATC
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAGGATACCATGTAAGACC
* *
81333592 ATGTCAAGACATGGCATTGATGAGTTACTATACGGCAAAGGTCC
65 ATGTCAAGACATCGCATTGATGAGTTACTATAAGGCAAAGGTCC
*
81333636 CATGTAAGATCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCA
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCA
81333701 TGTCAAGACATCGCATTGATGAGTTACTATAAGGCAAAGGTCC
66 TGTCAAGACATCGCATTGATGAGTTACTATAAGGCAAAGGTCC
*
81333744 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCACGTAAGACCA
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCA
81333809 TGTCAAGACAT
66 TGTCAAGACAT
81333820 GGCAATGGTA
Statistics
Matches: 170, Mismatches: 14, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
108 139 0.82
109 31 0.18
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.22
Consensus pattern (108 bp):
CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCA
TGTCAAGACATCGCATTGATGAGTTACTATAAGGCAAAGGTCC
Found at i:81335861 original size:46 final size:46
Alignment explanation
Indices: 81335811--81335986 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
81335801 TGGTTGAGCA
81335811 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
81335857 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
81335902 CATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTGTGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
81335950 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
81335987 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.57
47 28 0.26
48 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:81335972 original size:93 final size:93
Alignment explanation
Indices: 81335808--81335979 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
81335798 GGATGGTTGA
* *
81335808 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
81335873 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
81335901 GCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTGTGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
81335966 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
81335980 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:81341602 original size:32 final size:32
Alignment explanation
Indices: 81341563--81341722 Score: 248
Period size: 32 Copynumber: 5.0 Consensus size: 32
81341553 CATAAAAAAT
* *
81341563 ATCATACATTAGGTTTACTTATAAAAAAGTAG
1 ATCATACATTAGTTTTACATATAAAAAAGTAG
* *
81341595 ATCATACATTAGTTTTGCATATAAAAAAGTAT
1 ATCATACATTAGTTTTACATATAAAAAAGTAG
*
81341627 ATCATACATTAGGTTTACATATAAAAAAGTAG
1 ATCATACATTAGTTTTACATATAAAAAAGTAG
* *
81341659 ATCATACATTAGTTTTGCATATGAAAAAGTAG
1 ATCATACATTAGTTTTACATATAAAAAAGTAG
*
81341691 ATCATATATTAGTTTTACATATAAAAAAGTAG
1 ATCATACATTAGTTTTACATATAAAAAAGTAG
81341723 CATAGTTATA
Statistics
Matches: 115, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 115 1.00
ACGTcount: A:0.44, C:0.09, G:0.12, T:0.35
Consensus pattern (32 bp):
ATCATACATTAGTTTTACATATAAAAAAGTAG
Found at i:81341634 original size:64 final size:64
Alignment explanation
Indices: 81341561--81341722 Score: 279
Period size: 64 Copynumber: 2.5 Consensus size: 64
81341551 AACATAAAAA
*
81341561 ATATCATACATTAGGTTTACTTATAAAAAAGTAGATCATACATTAGTTTTGCATATAAAAAAGT
1 ATATCATACATTAGGTTTACATATAAAAAAGTAGATCATACATTAGTTTTGCATATAAAAAAGT
*
81341625 ATATCATACATTAGGTTTACATATAAAAAAGTAGATCATACATTAGTTTTGCATATGAAAAAGT
1 ATATCATACATTAGGTTTACATATAAAAAAGTAGATCATACATTAGTTTTGCATATAAAAAAGT
* * *
81341689 AGATCATATATTAGTTTTACATATAAAAAAGTAG
1 ATATCATACATTAGGTTTACATATAAAAAAGTAG
81341723 CATAGTTATA
Statistics
Matches: 93, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
64 93 1.00
ACGTcount: A:0.44, C:0.09, G:0.12, T:0.35
Consensus pattern (64 bp):
ATATCATACATTAGGTTTACATATAAAAAAGTAGATCATACATTAGTTTTGCATATAAAAAAGT
Found at i:81347804 original size:84 final size:84
Alignment explanation
Indices: 81347658--81347813 Score: 199
Period size: 84 Copynumber: 1.9 Consensus size: 84
81347648 TCTAGTTGAG
* * *
81347658 CTATTCAATCTTCTATTTAGTTGAAATCTTTAATTCCAACAATAGGAGGATCTGACGTTGATAG-
1 CTATCCAATCTTCTATTTAGTTGAAATCTTAAATTCCAACAATAGGAGAATCTGACGTTGATAGT
81347722 CCTCCAATCTTTGGTTTAAA
66 CC-CCAATCTTTGGTTTAAA
* * * * * *
81347742 CTATCCAATCTTCTATTTA-TCTGAGATCTTAAATTCCTACATTCGGTGAATCTGAGGTTGATAG
1 CTATCCAATCTTCTATTTAGT-TGAAATCTTAAATTCCAACAATAGGAGAATCTGACGTTGATAG
81347806 TCCCCAAT
65 TCCCCAAT
81347814 TTTTTGTGGA
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
83 1 0.02
84 58 0.95
85 2 0.03
ACGTcount: A:0.28, C:0.20, G:0.14, T:0.38
Consensus pattern (84 bp):
CTATCCAATCTTCTATTTAGTTGAAATCTTAAATTCCAACAATAGGAGAATCTGACGTTGATAGT
CCCCAATCTTTGGTTTAAA
Found at i:81349417 original size:22 final size:22
Alignment explanation
Indices: 81349392--81349435 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
81349382 TTATGCTGAT
*
81349392 TCATAGAGCTGATTTGTAGGGA
1 TCATAGAACTGATTTGTAGGGA
*
81349414 TCATAGAATTGATTTGTAGGGA
1 TCATAGAACTGATTTGTAGGGA
81349436 CTTGTTTTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.30, C:0.07, G:0.30, T:0.34
Consensus pattern (22 bp):
TCATAGAACTGATTTGTAGGGA
Found at i:81354192 original size:38 final size:38
Alignment explanation
Indices: 81354150--81354225 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
81354140 ATGAAAAGTC
81354150 AATTACTATCATATAGTAATTAAGTCATTCATCACAAA
1 AATTACTATCATATAGTAATTAAGTCATTCATCACAAA
81354188 AATTACTATCATATAGTAATTAAGTCATTCATCACAAA
1 AATTACTATCATATAGTAATTAAGTCATTCATCACAAA
81354226 GACAAACGAC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.45, C:0.16, G:0.05, T:0.34
Consensus pattern (38 bp):
AATTACTATCATATAGTAATTAAGTCATTCATCACAAA
Found at i:81358243 original size:23 final size:23
Alignment explanation
Indices: 81358216--81358259 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
81358206 TAAATTTTTG
81358216 AACAAAATATAACCCAATCATTT
1 AACAAAATATAACCCAATCATTT
81358239 AACAAAATATAACCCAATCAT
1 AACAAAATATAACCCAATCAT
81358260 AATTGAAAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.55, C:0.23, G:0.00, T:0.23
Consensus pattern (23 bp):
AACAAAATATAACCCAATCATTT
Found at i:81359965 original size:20 final size:19
Alignment explanation
Indices: 81359942--81359980 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 19
81359932 ATAAAATATT
81359942 AATAATTTAA-TAAATTAAAA
1 AATAA-TTAATTAAA-TAAAA
81359962 AATAATTAATTAAATAAAA
1 AATAATTAATTAAATAAAA
81359981 TTAAAATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (19 bp):
AATAATTAATTAAATAAAA
Found at i:81359971 original size:24 final size:24
Alignment explanation
Indices: 81359920--81359987 Score: 75
Period size: 25 Copynumber: 2.8 Consensus size: 24
81359910 TTTTCTCAAA
* *
81359920 AATTTAATCAATATAAAATATTAAT
1 AATTTAATAAAT-TAAAATAATAAT
81359945 AATTTAATAAATTAAAA-AATAATT
1 AATTTAATAAATTAAAATAATAA-T
*
81359969 AATTAAATAAAATTAAAAT
1 AATTTAAT-AAATTAAAAT
81359988 TTAGGAGAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
23 4 0.11
24 13 0.35
25 20 0.54
ACGTcount: A:0.62, C:0.01, G:0.00, T:0.37
Consensus pattern (24 bp):
AATTTAATAAATTAAAATAATAAT
Found at i:81361909 original size:338 final size:337
Alignment explanation
Indices: 81361291--81361968 Score: 1214
Period size: 338 Copynumber: 2.0 Consensus size: 337
81361281 CTTGTTGGCC
* *
81361291 TGCTTCAAATTCTCGAACTCAAATGTGCTTGTCATGCCATTTCTTAAGTCTTTCCTTGAGTAATT
1 TGCTTCAAATTCTCAAACTCAAATGTGCTTGTCATGCCATTTCTTAAGTCTTTCCTAGAGTAATT
* *
81361356 TAGCATTTTCGTATGAGAACATTCAAAATTCTTCTAACTCGTTGAGTTGGACATCCGTTTCTCTT
66 TAGCATTTTCGTATGAAAACATTCAAAATTCTTCTAACTCATTGAGTTGGACATCCGTTTCTCTT
**
81361421 TAGCAAGCTTAAGATCCAAGTTGAGTTATTGAAGAGCCTGGTAAGCTTTGTGCTCTAACTCCAAG
131 TAGCAAGCTTAAGATCCAAGTTGAGTTATTGAAGAGCCCAGTAAGCTTTGTGCTCTAACTCCAAG
*
81361486 GGCAGATGACAGGCTTTCTCAAAGACCAACCTATAGGGTGACATCCCTAAAGGTGTCTTGTATGC
196 GGCAGATGACAGGCTTTCTCAAAGACAAACCTATAGGGTGACATCCCTAAAGGTGTCTTGTATGC
* *
81361551 TATCTTGTAGGCCTATAAAGCATCATCTAGTCTTTTGAACCAATCTCGTC-AGTTCGGGCAAACT
261 TATCTTGTAGGCCCATAAAGCATCATCCAGTCTTTTGAACCAATCTCGTCGA-TTCGGGCAAACT
81361615 ATCTTCTCAAGTA
325 ATCTTCTCAAGTA
*
81361628 TGCTTCAAATTCTCAAACTCAAATGTGCTTGTCATGCCATTTCTTGAGTCTTTCCTAGAGTAATT
1 TGCTTCAAATTCTCAAACTCAAATGTGCTTGTCATGCCATTTCTTAAGTCTTTCCTAGAGTAATT
* *
81361693 TAGCATTTTCGTATGAAAACATTCAGAATTCTTCTAACTCATTGAGTTTGAGCATCCGTTTCTCT
66 TAGCATTTTCGTATGAAAACATTCAAAATTCTTCTAACTCATTGAGTTGGA-CATCCGTTTCTCT
*
81361758 TTAGCAAGCTTAAGATCCAAGTTGAGTTATTGAAGAGCCCAGTAAGCTTTGTGCTCTAATTCCAA
130 TTAGCAAGCTTAAGATCCAAGTTGAGTTATTGAAGAGCCCAGTAAGCTTTGTGCTCTAACTCCAA
81361823 GGGCAGATGACAGGCTTTCTCAAAGACAAACCTATAGGGTGACATCCCTAAAGGTGTCTTGTATG
195 GGGCAGATGACAGGCTTTCTCAAAGACAAACCTATAGGGTGACATCCCTAAAGGTGTCTTGTATG
81361888 CTATCTTGTAGGCCCATAAAGCATCATCCAGTCTTTTGAACCAATCTCGTCGATTCGGGCAAACT
260 CTATCTTGTAGGCCCATAAAGCATCATCCAGTCTTTTGAACCAATCTCGTCGATTCGGGCAAACT
81361953 ATCTTCTCAAGTA
325 ATCTTCTCAAGTA
81361966 TGC
1 TGC
81361969 CTTTGATATT
Statistics
Matches: 326, Mismatches: 13, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
337 109 0.33
338 216 0.66
339 1 0.00
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (337 bp):
TGCTTCAAATTCTCAAACTCAAATGTGCTTGTCATGCCATTTCTTAAGTCTTTCCTAGAGTAATT
TAGCATTTTCGTATGAAAACATTCAAAATTCTTCTAACTCATTGAGTTGGACATCCGTTTCTCTT
TAGCAAGCTTAAGATCCAAGTTGAGTTATTGAAGAGCCCAGTAAGCTTTGTGCTCTAACTCCAAG
GGCAGATGACAGGCTTTCTCAAAGACAAACCTATAGGGTGACATCCCTAAAGGTGTCTTGTATGC
TATCTTGTAGGCCCATAAAGCATCATCCAGTCTTTTGAACCAATCTCGTCGATTCGGGCAAACTA
TCTTCTCAAGTA
Found at i:81384856 original size:29 final size:29
Alignment explanation
Indices: 81384824--81384979 Score: 142
Period size: 29 Copynumber: 5.4 Consensus size: 29
81384814 AGTCTTCACC
* *
81384824 ATCCCTTTTCATAATTGATAACCAAAGCT
1 ATCCCTTTTCATAATTGATAGCCGAAGCT
*
81384853 ATCCCTTTTCATATTTGATAGCCGAAGCT
1 ATCCCTTTTCATAATTGATAGCCGAAGCT
*
81384882 ATCCCTTTTCAT-ATTCAATAGCCGAAGCT
1 ATCCCTTTTCATAATT-GATAGCCGAAGCT
* * * *
81384911 ATCCTTTTTCAATCAA-TGGTCGTC--A-CT
1 ATCCCTTTTC-AT-AATTGATAGCCGAAGCT
* ** *
81384938 GTCCCTTTTCATAATCAATAACCGAAGCT
1 ATCCCTTTTCATAATTGATAGCCGAAGCT
81384967 ATCCCTTTTCATA
1 ATCCCTTTTCATA
81384980 TTCGGTGATC
Statistics
Matches: 100, Mismatches: 19, Indels: 16
0.74 0.14 0.12
Matches are distributed among these distances:
25 2 0.02
26 4 0.04
27 10 0.10
28 4 0.04
29 73 0.73
30 5 0.05
31 1 0.01
32 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.10, T:0.37
Consensus pattern (29 bp):
ATCCCTTTTCATAATTGATAGCCGAAGCT
Found at i:81393022 original size:19 final size:19
Alignment explanation
Indices: 81392982--81393032 Score: 52
Period size: 19 Copynumber: 2.7 Consensus size: 19
81392972 AAAACTTGTA
* *
81392982 TAAATTAAATTAACTAAGT
1 TAAATTAAACTAACTAAAT
81393001 TAAATTAAACTAA-TAGAAT
1 TAAATTAAACTAACTA-AAT
*
81393020 T-AAGTAAACTAAC
1 TAAATTAAACTAAC
81393033 CAAACCAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 12 0.44
19 15 0.56
ACGTcount: A:0.55, C:0.08, G:0.06, T:0.31
Consensus pattern (19 bp):
TAAATTAAACTAACTAAAT
Found at i:81401839 original size:44 final size:44
Alignment explanation
Indices: 81401790--81401907 Score: 209
Period size: 44 Copynumber: 2.7 Consensus size: 44
81401780 AATCTACCTA
81401790 AAAAAGAGGAGAAGATAATCTTGGGTTGTTAAAAAAAAGAATTT
1 AAAAAGAGGAGAAGATAATCTTGGGTTGTTAAAAAAAAGAATTT
81401834 AAAAAGAGGAGAAGATAATCTTGGGTTGTTAAAAAAAAGAATTT
1 AAAAAGAGGAGAAGATAATCTTGGGTTGTTAAAAAAAAGAATTT
* * *
81401878 AAAAAGAAGAGAAGATAAACATGGGTTGTT
1 AAAAAGAGGAGAAGATAATCTTGGGTTGTT
81401908 GGATTTACCC
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 71 1.00
ACGTcount: A:0.50, C:0.03, G:0.24, T:0.24
Consensus pattern (44 bp):
AAAAAGAGGAGAAGATAATCTTGGGTTGTTAAAAAAAAGAATTT
Found at i:81410584 original size:34 final size:34
Alignment explanation
Indices: 81410546--81410612 Score: 116
Period size: 34 Copynumber: 2.0 Consensus size: 34
81410536 ATCATATATA
*
81410546 TCCATCGAAATTCATCATTCAAACAGAACTTAAC
1 TCCATCAAAATTCATCATTCAAACAGAACTTAAC
*
81410580 TCCATTAAAATTCATCATTCAAACAGAACTTAA
1 TCCATCAAAATTCATCATTCAAACAGAACTTAA
81410613 TATTTTCTGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.43, C:0.24, G:0.04, T:0.28
Consensus pattern (34 bp):
TCCATCAAAATTCATCATTCAAACAGAACTTAAC
Found at i:81430572 original size:42 final size:42
Alignment explanation
Indices: 81430525--81430610 Score: 145
Period size: 42 Copynumber: 2.0 Consensus size: 42
81430515 CAATACGGGA
* *
81430525 AATCACATATATCCATCGAAATTCATCATTCAAACGGAGCTT
1 AATCACATATATCCATCAAAATTCATCATTCAAACGGAACTT
*
81430567 AATCACATATATCCATCAAAATTCATCATTCAAATGGAACTT
1 AATCACATATATCCATCAAAATTCATCATTCAAACGGAACTT
81430609 AA
1 AA
81430611 CTCCATTAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.42, C:0.22, G:0.07, T:0.29
Consensus pattern (42 bp):
AATCACATATATCCATCAAAATTCATCATTCAAACGGAACTT
Found at i:81430616 original size:34 final size:34
Alignment explanation
Indices: 81430578--81430644 Score: 98
Period size: 34 Copynumber: 2.0 Consensus size: 34
81430568 ATCACATATA
* **
81430578 TCCATCAAAATTCATCATTCAAATGGAACTTAAC
1 TCCATCAAAACTCATCATTCAAACAGAACTTAAC
*
81430612 TCCATTAAAACTCATCATTCAAACAGAACTTAA
1 TCCATCAAAACTCATCATTCAAACAGAACTTAA
81430645 TATTTTCCAA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.43, C:0.24, G:0.04, T:0.28
Consensus pattern (34 bp):
TCCATCAAAACTCATCATTCAAACAGAACTTAAC
Found at i:81438161 original size:5 final size:5
Alignment explanation
Indices: 81438153--81438225 Score: 137
Period size: 5 Copynumber: 14.6 Consensus size: 5
81438143 GACCCATGGC
*
81438153 ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATTAT
1 ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT
81438203 ATGAT ATGAT ATGAT ATGAT ATG
1 ATGAT ATGAT ATGAT ATGAT ATG
81438226 TCTATATAGA
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 66 1.00
ACGTcount: A:0.40, C:0.00, G:0.19, T:0.41
Consensus pattern (5 bp):
ATGAT
Found at i:81449344 original size:27 final size:27
Alignment explanation
Indices: 81449314--81449407 Score: 134
Period size: 27 Copynumber: 3.5 Consensus size: 27
81449304 TTTGTCACGG
* * **
81449314 AGGCTTTCCTTTCATGTATTTCCATGA
1 AGGCATTCCTTTCATGTATTGCCACAA
*
81449341 AGGCACTCCTTTCATGTATTGCCACAA
1 AGGCATTCCTTTCATGTATTGCCACAA
81449368 AGGCATTCCTTTCATGTATTGCCACAA
1 AGGCATTCCTTTCATGTATTGCCACAA
*
81449395 AAGCATTCCTTTC
1 AGGCATTCCTTTC
81449408 CTAGCGTGTT
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 60 1.00
ACGTcount: A:0.23, C:0.27, G:0.14, T:0.36
Consensus pattern (27 bp):
AGGCATTCCTTTCATGTATTGCCACAA
Found at i:81459590 original size:24 final size:22
Alignment explanation
Indices: 81459563--81459612 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 22
81459553 CATTATTCGT
*
81459563 ATAAGTATGAATTCCATACTATTA
1 ATAAGTAT-AAATCCATACT-TTA
* *
81459587 ATAATTATAAATCCATAGTTTA
1 ATAAGTATAAATCCATACTTTA
81459609 ATAA
1 ATAA
81459613 TTTCATATAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
22 7 0.30
23 9 0.39
24 7 0.30
ACGTcount: A:0.46, C:0.10, G:0.06, T:0.38
Consensus pattern (22 bp):
ATAAGTATAAATCCATACTTTA
Found at i:81461575 original size:87 final size:86
Alignment explanation
Indices: 81461420--81461578 Score: 237
Period size: 87 Copynumber: 1.8 Consensus size: 86
81461410 CATGCATAAG
* *
81461420 GTTGAGTTTTTACTCTTAATGAATTCATATCCCAGGGTTTGGGCGATCCTATTGAGACGAACTTG
1 GTTGAATTTTTACTCTTAATGAATTCATATCCCAGAGTTTGGGCGATCCTATTGAGACGAACTTG
81461485 ATGAATTTACTGACATGTGAT
66 ATGAATTTACTGACATGTGAT
* * * * * *
81461506 GTTGAATTTCTTACTCTTAATGAGTTCATATCCTAGAGTTTGGGTGGTCCTATTGGGACGGACTT
1 GTTGAATTT-TTACTCTTAATGAATTCATATCCCAGAGTTTGGGCGATCCTATTGAGACGAACTT
81461571 GATGAATT
65 GATGAATT
81461579 CACCGAATTT
Statistics
Matches: 64, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
86 8 0.12
87 56 0.88
ACGTcount: A:0.24, C:0.14, G:0.23, T:0.38
Consensus pattern (86 bp):
GTTGAATTTTTACTCTTAATGAATTCATATCCCAGAGTTTGGGCGATCCTATTGAGACGAACTTG
ATGAATTTACTGACATGTGAT
Found at i:81463143 original size:42 final size:44
Alignment explanation
Indices: 81463096--81463192 Score: 148
Period size: 42 Copynumber: 2.3 Consensus size: 44
81463086 ATGTATATAA
81463096 TTAATATATAAAGAGT-AATTTATAAA-TTAAAAAATTATCTCT
1 TTAATATATAAAGAGTAAATTTATAAATTTAAAAAATTATCTCT
81463138 TTAATATAT-AA-AGTAAATTTATAAATTTAAAAAATTATCTCT
1 TTAATATATAAAGAGTAAATTTATAAATTTAAAAAATTATCTCT
* *
81463180 TCAATAAATAAAG
1 TTAATATATAAAG
81463193 TAAAAGATAT
Statistics
Matches: 49, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
40 3 0.06
41 12 0.24
42 32 0.65
43 2 0.04
ACGTcount: A:0.52, C:0.05, G:0.04, T:0.39
Consensus pattern (44 bp):
TTAATATATAAAGAGTAAATTTATAAATTTAAAAAATTATCTCT
Found at i:81463211 original size:42 final size:42
Alignment explanation
Indices: 81463116--81463202 Score: 113
Period size: 42 Copynumber: 2.1 Consensus size: 42
81463106 AAGAGTAATT
* * **
81463116 TATAAAT-TAAAAAATTATCTCTTTAATATATAAAGTAAATT
1 TATAAATCTAAAAAATTATCTCTTCAATAAATAAAGTAAAGA
*
81463157 TATAAATTTAAAAAATTATCTCTTCAATAAATAAAGTAAAAGA
1 TATAAATCTAAAAAATTATCTCTTCAATAAATAAAGT-AAAGA
81463200 TAT
1 TAT
81463203 GTACTAAAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
41 7 0.17
42 27 0.68
43 6 0.15
ACGTcount: A:0.53, C:0.06, G:0.03, T:0.38
Consensus pattern (42 bp):
TATAAATCTAAAAAATTATCTCTTCAATAAATAAAGTAAAGA
Found at i:81468024 original size:69 final size:69
Alignment explanation
Indices: 81467910--81468044 Score: 252
Period size: 69 Copynumber: 2.0 Consensus size: 69
81467900 GATAGGAAAA
* *
81467910 ACAGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTTTAGCAGGTTTTGTAGTTGTGGTAGG
1 ACAGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTTCAGCAGGTTTTGTAGTGGTGGTAGG
81467975 GCTG
66 GCTG
81467979 ACAGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTTCAGCAGGTTTTGTAGTGGTGGTAGG
1 ACAGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTTCAGCAGGTTTTGTAGTGGTGGTAGG
81468044 G
66 G
81468045 TTGATAGAGT
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
69 64 1.00
ACGTcount: A:0.27, C:0.12, G:0.33, T:0.29
Consensus pattern (69 bp):
ACAGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTTCAGCAGGTTTTGTAGTGGTGGTAGG
GCTG
Found at i:81478200 original size:126 final size:127
Alignment explanation
Indices: 81477961--81478212 Score: 402
Period size: 127 Copynumber: 2.0 Consensus size: 127
81477951 TCTGAACCTT
* * * * *
81477961 GCTGTCAAAGTGTGAAAATTTCTTGAATGCAATTTTTGTTAGTTACTTTATTACATTGTTTAGAA
1 GCTGTAAAAGTGTGAAAATTTCCTGAAGGCAATTTTTGTTAATTACTTTATTACATTATTTAGAA
*
81478026 AGCAAATATTATTTTGGTTTTGACACATACTTTAGTTGCAATAACTCCTGTTGT-CATGGTA
66 AGCAAATATTATTTTGGTTTTGACACATACCTTAGTTGCAATAACTCCTGTTGTCCATGGTA
81478087 GCTGTAAAAGTGTGAAAATTTTCCTGAAGGCAATTTTTGTTAATTACTTTATTACATTATTTAGA
1 GCTGTAAAAGTGTGAAAA-TTTCCTGAAGGCAATTTTTGTTAATTACTTTATTACATTATTTAGA
*
81478152 AATCAAATATT-TTTGTGG-TTTGACACATACCTTAGTTGCAATAACTCCTGTTGTCCATGGT
65 AAGCAAATATTATTT-TGGTTTTGACACATACCTTAGTTGCAATAACTCCTGTTGTCCATGGT
81478213 GGAGCCCTCA
Statistics
Matches: 116, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
126 55 0.47
127 61 0.53
ACGTcount: A:0.29, C:0.13, G:0.16, T:0.42
Consensus pattern (127 bp):
GCTGTAAAAGTGTGAAAATTTCCTGAAGGCAATTTTTGTTAATTACTTTATTACATTATTTAGAA
AGCAAATATTATTTTGGTTTTGACACATACCTTAGTTGCAATAACTCCTGTTGTCCATGGTA
Found at i:81485135 original size:43 final size:43
Alignment explanation
Indices: 81485031--81485172 Score: 214
Period size: 43 Copynumber: 3.3 Consensus size: 43
81485021 TTTTTAGAAT
* *
81485031 AAAATGCCGCTAAAGACCAGGACCTTTCGCGGCGC-TTTTATA
1 AAAACGCCGCTAAAGACCAGGACCTTTCGCGGCGCTTTTTTTA
*
81485073 AAAACGCCGCTAAAAACCAGGACCTTTCGCGGCGCTTTTTTTA
1 AAAACGCCGCTAAAGACCAGGACCTTTCGCGGCGCTTTTTTTA
* * *
81485116 AAAACGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTATTG
1 AAAACGCCGCTAAAGACCAGGACCTTTCGCGGCGCTTTTTTTA
*
81485159 CAAACGCCGCTAAA
1 AAAACGCCGCTAAA
81485173 AATATGACCT
Statistics
Matches: 91, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
42 33 0.36
43 58 0.64
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (43 bp):
AAAACGCCGCTAAAGACCAGGACCTTTCGCGGCGCTTTTTTTA
Found at i:81489603 original size:40 final size:40
Alignment explanation
Indices: 81489534--81489646 Score: 163
Period size: 40 Copynumber: 2.8 Consensus size: 40
81489524 CCCTTTTGAG
*
81489534 ATTTATTTGTGGTGTTTTTTTATAAAAACGCCGTTATTGTTA
1 ATTT-TTTGTGGCG-TTTTTTATAAAAACGCCGTTATTGTTA
* *
81489576 ATTTTTTGTGGCGTTTTTTACAAAAACGTCGTTATTGTTA
1 ATTTTTTGTGGCGTTTTTTATAAAAACGCCGTTATTGTTA
* *
81489616 ATTTTTTGTAGCGTTTTTCATAAAAACGCCG
1 ATTTTTTGTGGCGTTTTTTATAAAAACGCCG
81489647 GTAAAAAATT
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
40 52 0.81
41 8 0.12
42 4 0.06
ACGTcount: A:0.24, C:0.11, G:0.17, T:0.49
Consensus pattern (40 bp):
ATTTTTTGTGGCGTTTTTTATAAAAACGCCGTTATTGTTA
Found at i:81490493 original size:50 final size:50
Alignment explanation
Indices: 81490458--81490553 Score: 129
Period size: 50 Copynumber: 1.9 Consensus size: 50
81490448 TAAACCTTAA
*
81490458 ACAATAAAACATAAACCCTTAACCCTTAACCCCTAAACCTTAAACCCCAAT
1 ACAATAAAACATAAACCC-TAACCCTTAACCCCTAAACCATAAACCCCAAT
** * * *
81490509 ACCCTAAAACTTAAACCCTAACCTTTAACCCATAAACCATAAACC
1 ACAATAAAACATAAACCCTAACCCTTAACCCCTAAACCATAAACC
81490554 ATAATCCCTA
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
50 24 0.62
51 15 0.38
ACGTcount: A:0.45, C:0.35, G:0.00, T:0.20
Consensus pattern (50 bp):
ACAATAAAACATAAACCCTAACCCTTAACCCCTAAACCATAAACCCCAAT
Found at i:81490496 original size:15 final size:15
Alignment explanation
Indices: 81490442--81490505 Score: 60
Period size: 14 Copynumber: 4.4 Consensus size: 15
81490432 CTTAGCTCCT
81490442 AACCCCTAAACCTTA
1 AACCCCTAAACCTTA
** * *
81490457 AA-CAATAAAACATA
1 AACCCCTAAACCTTA
* *
81490471 AACCCTTAACCCTT-
1 AACCCCTAAACCTTA
81490485 AACCCCTAAACCTTA
1 AACCCCTAAACCTTA
81490500 AACCCC
1 AACCCC
81490506 AATACCCTAA
Statistics
Matches: 36, Mismatches: 11, Indels: 4
0.71 0.22 0.08
Matches are distributed among these distances:
14 22 0.61
15 14 0.39
ACGTcount: A:0.44, C:0.38, G:0.00, T:0.19
Consensus pattern (15 bp):
AACCCCTAAACCTTA
Found at i:81490503 original size:22 final size:21
Alignment explanation
Indices: 81490439--81490531 Score: 80
Period size: 22 Copynumber: 4.3 Consensus size: 21
81490429 ATTCTTAGCT
81490439 CCTAACCCCTAAACCTTAAAC
1 CCTAACCCCTAAACCTTAAAC
** ** *
81490460 AATAAAACATAAACCCTT-AAC
1 CCTAACCCCTAAA-CCTTAAAC
81490481 CCTTAACCCCTAAACCTTAAAC
1 CC-TAACCCCTAAACCTTAAAC
* * *
81490503 CCCAATACCCTAAAACTTAAAC
1 CCTAA-CCCCTAAACCTTAAAC
81490525 CCTAACC
1 CCTAACC
81490532 TTTAACCCAT
Statistics
Matches: 53, Mismatches: 15, Indels: 8
0.70 0.20 0.11
Matches are distributed among these distances:
21 18 0.34
22 35 0.66
ACGTcount: A:0.43, C:0.38, G:0.00, T:0.19
Consensus pattern (21 bp):
CCTAACCCCTAAACCTTAAAC
Found at i:81490553 original size:15 final size:15
Alignment explanation
Indices: 81490535--81490582 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
81490525 CCTAACCTTT
81490535 AACCCATAAACCATA
1 AACCCATAAACCATA
* *
81490550 AA-CCATAATCCCTA
1 AACCCATAAACCATA
81490564 AACCCATAATA-CATA
1 AACCCATAA-ACCATA
81490579 AACC
1 AACC
81490583 TTATAATAGT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
14 12 0.44
15 15 0.56
ACGTcount: A:0.50, C:0.33, G:0.00, T:0.17
Consensus pattern (15 bp):
AACCCATAAACCATA
Found at i:81490855 original size:40 final size:39
Alignment explanation
Indices: 81490796--81491027 Score: 127
Period size: 40 Copynumber: 5.6 Consensus size: 39
81490786 CTATTTTTGT
*
81490796 GGCGTTTTTCAAAAA-CGCCGCTAAAGATCG-AGC-ACTAGC
1 GGCGTTTTTAAAAAAGCGCCGCTAAAGAT-GTA-CTA-TAGC
* *
81490835 GGCGTTTTTTAAAAAGCGCCGCTAAAGGTGTACTTATAGC
1 GGCGTTTTTAAAAAAGCGCCGCTAAAGATGTAC-TATAGC
*
81490875 GGCGTTTCTTAAAAAAGCGCCGCTAAAGCCAT-TACAAAATTCTTTAGC
1 GGCGTTT-TTAAAAAAGCGCCGCTAAAG--ATGT-----A--CTATAGC
* * * * *
81490923 GGCGCTTTTTAGAAAA-CGCCGCTAATGCT-TGATCTTTAAC
1 GGCG-TTTTTAAAAAAGCGCCGCTAAAGATGT-A-CTATAGC
* *
81490963 GGCGTTTTCT-AAAAAGCGCCGCTAATGGTGTACATATAGC
1 GGCGTTTT-TAAAAAAGCGCCGCTAAAGATGTAC-TATAGC
* *
81491003 GGCGTTTTTAGAAAAGTGCCGCTAA
1 GGCGTTTTTAAAAAAGCGCCGCTAA
81491028 TACTCGATCT
Statistics
Matches: 157, Mismatches: 16, Indels: 39
0.74 0.08 0.18
Matches are distributed among these distances:
39 26 0.17
40 74 0.47
41 22 0.14
42 1 0.01
43 1 0.01
45 2 0.01
47 11 0.07
48 16 0.10
49 4 0.03
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (39 bp):
GGCGTTTTTAAAAAAGCGCCGCTAAAGATGTACTATAGC
Found at i:81491024 original size:80 final size:79
Alignment explanation
Indices: 81490919--81491066 Score: 208
Period size: 80 Copynumber: 1.9 Consensus size: 79
81490909 CAAAATTCTT
* * *
81490919 TAGCGGCGCTTTTTAGAAAACGCCGCTAATGCTTGATCTTTAACGGCGTTTTCTAAAAAGCGCCG
1 TAGCGGCGCTTTTTAGAAAACGCCGCTAATACTCGATCTTTAACAGCGTTTT-TAAAAAGCGCCG
81490984 CTAATGGTGTACATA
65 CTAATGGTGTACATA
* * * *
81490999 TAGCGGCG-TTTTTAGAAAAGTGCCGCTAATACTCGATCTTTAGCAGTGTTTTTAGAAAGCGCCG
1 TAGCGGCGCTTTTTAGAAAA-CGCCGCTAATACTCGATCTTTAACAGCGTTTTTAAAAAGCGCCG
81491063 CTAA
65 CTAA
81491067 AGCCACCAAA
Statistics
Matches: 60, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
79 26 0.43
80 34 0.57
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.30
Consensus pattern (79 bp):
TAGCGGCGCTTTTTAGAAAACGCCGCTAATACTCGATCTTTAACAGCGTTTTTAAAAAGCGCCGC
TAATGGTGTACATA
Found at i:81491028 original size:40 final size:40
Alignment explanation
Indices: 81490919--81491066 Score: 144
Period size: 40 Copynumber: 3.7 Consensus size: 40
81490909 CAAAATTCTT
*
81490919 TAGCGGCGCTTTTTAGAAAA-CGCCGCTAATGCTTGATCTT
1 TAGCGGCG-TTTTTAGAAAAGCGCCGCTAATGCTTGATCTA
* *
81490959 TAACGGCGTTTTCTA-AAAAGCGCCGCTAATG-GTG-TACATA
1 TAGCGGCGTTTT-TAGAAAAGCGCCGCTAATGCTTGAT-C-TA
* * * *
81490999 TAGCGGCGTTTTTAGAAAAGTGCCGCTAATACTCGATCTT
1 TAGCGGCGTTTTTAGAAAAGCGCCGCTAATGCTTGATCTA
* *
81491039 TAGCAGTGTTTTTAG-AAAGCGCCGCTAA
1 TAGCGGCGTTTTTAGAAAAGCGCCGCTAA
81491067 AGCCACCAAA
Statistics
Matches: 89, Mismatches: 12, Indels: 15
0.77 0.10 0.13
Matches are distributed among these distances:
38 1 0.01
39 25 0.28
40 60 0.67
41 2 0.02
42 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.30
Consensus pattern (40 bp):
TAGCGGCGTTTTTAGAAAAGCGCCGCTAATGCTTGATCTA
Found at i:81492761 original size:45 final size:45
Alignment explanation
Indices: 81492697--81492859 Score: 183
Period size: 45 Copynumber: 3.7 Consensus size: 45
81492687 AGGACTATGC
*
81492697 TATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGTGTCGATA
1 TATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGTATCGATA
*
81492742 TATGTGTTTTCGTTTAAGACCACGTCTGGGACGTTGGTATCGATA
1 TATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGTATCGATA
* * * * * * * *
81492787 TATATGGTTACGAGTAAGACCATGTCTGGGACATCGGTATTG-TA
1 TATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGTATCGATA
*
81492831 T-T-TGATTT-GTGTAAGACC-CTGTCTGGGAC
1 TATGTGTTTTCGTGTAAGACCAC-GTCTGGGAC
81492860 AGTGACATTG
Statistics
Matches: 102, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
41 18 0.18
42 4 0.04
43 1 0.01
44 3 0.03
45 76 0.75
ACGTcount: A:0.21, C:0.15, G:0.28, T:0.36
Consensus pattern (45 bp):
TATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGTATCGATA
Found at i:81496474 original size:46 final size:46
Alignment explanation
Indices: 81496422--81496586 Score: 222
Period size: 46 Copynumber: 3.6 Consensus size: 46
81496412 GCTTTCTGAA
* * *
81496422 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATAAT
1 ATGAAATGAGTAAGACCATAGTTGAAAGATACCATGGCAACATGAT
** * *
81496468 ATGAAATTTGTAAGACCATAGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGAGTAAGACCATAGTTGAAAGATACCATGGCAACATGAT
* * *
81496514 ATGAAATGAATAAGACCATGGTTGAAAGATACCATAGCAACATGAT
1 ATGAAATGAGTAAGACCATAGTTGAAAGATACCATGGCAACATGAT
* *
81496560 AGGAAATGAGTAAGACCACAGTTGAAA
1 ATGAAATGAGTAAGACCATAGTTGAAA
81496587 AACACTATGG
Statistics
Matches: 103, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 103 1.00
ACGTcount: A:0.43, C:0.13, G:0.22, T:0.22
Consensus pattern (46 bp):
ATGAAATGAGTAAGACCATAGTTGAAAGATACCATGGCAACATGAT
Found at i:81496597 original size:92 final size:92
Alignment explanation
Indices: 81496422--81496598 Score: 255
Period size: 92 Copynumber: 1.9 Consensus size: 92
81496412 GCTTTCTGAA
** * * ** *
81496422 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATAATATGAAATTTGTAAGACCAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATAGCAACATAATAGGAAATGAGTAAGACCAC
* *
81496487 AGTTGAAAGATACCATGGCAACGTGAC
66 AGTTGAAAAACACCATGGCAACGTGAC
*
81496514 ATGAAATGAATAAGACCATGGTTGAAAGATACCATAGCAACATGATAGGAAATGAGTAAGACCAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATAGCAACATAATAGGAAATGAGTAAGACCAC
*
81496579 AGTTGAAAAACACTATGGCA
66 AGTTGAAAAACACCATGGCA
81496599 TCATGTCAAA
Statistics
Matches: 74, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
92 74 1.00
ACGTcount: A:0.43, C:0.14, G:0.21, T:0.21
Consensus pattern (92 bp):
ATGAAATGAATAAGACCATGGTTGAAAGATACCATAGCAACATAATAGGAAATGAGTAAGACCAC
AGTTGAAAAACACCATGGCAACGTGAC
Found at i:81501297 original size:21 final size:23
Alignment explanation
Indices: 81501272--81501314 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
81501262 AATATTCTTA
81501272 TTGTTA-AAAA-TTTATTTTAGT
1 TTGTTAGAAAAGTTTATTTTAGT
81501293 TTGTTAGAAAATGTTTATTTTA
1 TTGTTAGAAAA-GTTTATTTTA
81501315 ATATTTTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 6 0.32
22 4 0.21
24 9 0.47
ACGTcount: A:0.33, C:0.00, G:0.12, T:0.56
Consensus pattern (23 bp):
TTGTTAGAAAAGTTTATTTTAGT
Found at i:81504848 original size:23 final size:23
Alignment explanation
Indices: 81504814--81504858 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
81504804 CCTGTTAAAT
81504814 GGCTCTTTGTGAGCTTCCTGATA
1 GGCTCTTTGTGAGCTTCCTGATA
*
81504837 GGCT-TTTCGTGAGTTTCCTGAT
1 GGCTCTTT-GTGAGCTTCCTGAT
81504859 TAAAAGTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 3 0.15
23 17 0.85
ACGTcount: A:0.11, C:0.20, G:0.27, T:0.42
Consensus pattern (23 bp):
GGCTCTTTGTGAGCTTCCTGATA
Found at i:81507828 original size:19 final size:17
Alignment explanation
Indices: 81507781--81507829 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 17
81507771 CATATTTTGT
*
81507781 ATTTGAATTTTTGATAA
1 ATTTGAAATTTTGATAA
81507798 ATTTGAGTAATTTTGACTAA
1 ATTTGA--AATTTTGA-TAA
81507818 ATTGTGAAATTT
1 ATT-TGAAATTT
81507830 ATAGATTGAG
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 6 0.22
19 12 0.44
20 6 0.22
21 3 0.11
ACGTcount: A:0.35, C:0.02, G:0.14, T:0.49
Consensus pattern (17 bp):
ATTTGAAATTTTGATAA
Found at i:81508375 original size:44 final size:43
Alignment explanation
Indices: 81508327--81508525 Score: 190
Period size: 44 Copynumber: 4.6 Consensus size: 43
81508317 ATATGTTATT
* *
81508327 GTGTAAGACCATGTCTAGGACATTGGCATCGACTTATGATTTAC
1 GTGTAAGACCACGTCTGGGACATTGGCATCGA-TTATGATTTAC
* * * * *
81508371 GTGTAAGACCACGTCTGAGACGTTGGTATCAACTTATGATTGAC
1 GTGTAAGACCACGTCTGGGACATTGGCATCGA-TTATGATTTAC
* *
81508415 GTATAAGACCACGTCTGGGACGTTGGCATCGTATT-TGATTT-C
1 GTGTAAGACCACGTCTGGGACATTGGCATCG-ATTATGATTTAC
* * *
81508457 GTGTAAGACTC-TGTCTGGGACAGTGGCATCGATATTTGA-TTAC
1 GTGTAAGAC-CACGTCTGGGACATTGGCATCGAT-TATGATTTAC
* * *
81508500 ATGTAAGACCACGTCTGAGACGTTGG
1 GTGTAAGACCACGTCTGGGACATTGG
81508526 AATTGTATGA
Statistics
Matches: 128, Mismatches: 21, Indels: 13
0.79 0.13 0.08
Matches are distributed among these distances:
41 2 0.02
42 30 0.23
43 29 0.23
44 66 0.52
45 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (43 bp):
GTGTAAGACCACGTCTGGGACATTGGCATCGATTATGATTTAC
Found at i:81508494 original size:43 final size:42
Alignment explanation
Indices: 81508427--81508525 Score: 121
Period size: 43 Copynumber: 2.3 Consensus size: 42
81508417 ATAAGACCAC
* *
81508427 GTCTGGGACGTTGGCATCGTATTTGATTTCGTGTAAGACTCT
1 GTCTGGGACGTTGGCATCGTATTTGATTACATGTAAGACTCT
*
81508469 GTCTGGGACAG-TGGCATCGATATTTGATTACATGTAAGAC-CAC
1 GTCTGGGAC-GTTGGCATCG-TATTTGATTACATGTAAGACTC-T
*
81508512 GTCTGAGACGTTGG
1 GTCTGGGACGTTGG
81508526 AATTGTATGA
Statistics
Matches: 49, Mismatches: 4, Indels: 7
0.82 0.07 0.12
Matches are distributed among these distances:
42 19 0.39
43 30 0.61
ACGTcount: A:0.21, C:0.17, G:0.29, T:0.32
Consensus pattern (42 bp):
GTCTGGGACGTTGGCATCGTATTTGATTACATGTAAGACTCT
Found at i:81510614 original size:29 final size:29
Alignment explanation
Indices: 81510579--81510652 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
81510569 GTTGTGAGAT
* *
81510579 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
81510608 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
81510637 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
81510653 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:81520077 original size:20 final size:20
Alignment explanation
Indices: 81520052--81520097 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
81520042 TATTTTTATG
*
81520052 ATGATTAGAAGC-ATATTTAC
1 ATGATTAG-AGCGATAATTAC
*
81520072 ATGATTTGAGCGATAATTAC
1 ATGATTAGAGCGATAATTAC
81520092 ATGATT
1 ATGATT
81520098 TTTTTTATCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 3 0.13
20 20 0.87
ACGTcount: A:0.37, C:0.09, G:0.17, T:0.37
Consensus pattern (20 bp):
ATGATTAGAGCGATAATTAC
Found at i:81522271 original size:41 final size:41
Alignment explanation
Indices: 81522214--81522292 Score: 140
Period size: 41 Copynumber: 1.9 Consensus size: 41
81522204 TGATAAAATT
*
81522214 TGTTAGAAACACACTCAATTTAATATTCGGGTATAGTAATC
1 TGTTAGAAACACACTCAATTTAATATTCAGGTATAGTAATC
*
81522255 TGTTAGAAACACACTCAATTTAATATTCATGTATAGTA
1 TGTTAGAAACACACTCAATTTAATATTCAGGTATAGTA
81522293 TTGATAGTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.38, C:0.14, G:0.13, T:0.35
Consensus pattern (41 bp):
TGTTAGAAACACACTCAATTTAATATTCAGGTATAGTAATC
Found at i:81528881 original size:21 final size:21
Alignment explanation
Indices: 81528855--81528896 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
81528845 CAAAGAGATT
81528855 ATTTTTAAAATTTATAATGCC
1 ATTTTTAAAATTTATAATGCC
81528876 ATTTTTAAAATTTATAATGCC
1 ATTTTTAAAATTTATAATGCC
81528897 CTAAGATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.38, C:0.10, G:0.05, T:0.48
Consensus pattern (21 bp):
ATTTTTAAAATTTATAATGCC
Found at i:81532581 original size:37 final size:37
Alignment explanation
Indices: 81532527--81532629 Score: 163
Period size: 37 Copynumber: 2.8 Consensus size: 37
81532517 CGAATAGTCC
81532527 CCACACGTAGT-TATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCT-TCGGGTCTTACCCGGACAAAATCT
*
81532564 CCACACGTAGTCTTCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCTTCGGGTCTTACCCGGACAAAATCT
* *
81532601 CCACACGTAGTCATCGAGTCTTACCCGGA
1 CCACACGTAGTCTTCGGGTCTTACCCGGA
81532630 ATATATTTCC
Statistics
Matches: 62, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
37 61 0.98
38 1 0.02
ACGTcount: A:0.24, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCTTCGGGTCTTACCCGGACAAAATCT
Found at i:81532856 original size:48 final size:48
Alignment explanation
Indices: 81532802--81533407 Score: 1014
Period size: 48 Copynumber: 12.6 Consensus size: 48
81532792 GCCGAATCAC
* *
81532802 TAGCCATTCAGCTTTACCACATATACATATCTCATACATATTTCGCAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
81532850 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
81532898 TAGCCATTCGGCTTTACCACGTATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
81532946 TAGCCATTCGGCTTTACCTCATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* * *
81532994 TAGCCATTCGGCTTTACCGCATATACATATCTTATACCTATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* *
81533042 TAGCCATTCGGATTTACCACATATACATATCTCATACCTATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* *
81533090 TAGCCATTCGGCTTTACCGCATATACATATCTCATACGTATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* *
81533138 TAGCCATTCGGCTTTACCGCATATACATATCTCATACGTATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* *
81533186 TAGCCATTCGGCTTTACCGCATATACATATCTCATACGTATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* *
81533234 TAGCCATTCAGTTTTACCACATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
81533282 TAGCCATTCGGCTTTACCACATATACATATCTCATACATAGTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* * *
81533330 TAGCCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCACAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
81533378 TAGCCATTCGGCTTTACCACATATACATAT
1 TAGCCATTCGGCTTTACCACATATACATAT
81533408 ATATTTATCT
Statistics
Matches: 532, Mismatches: 26, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 532 1.00
ACGTcount: A:0.30, C:0.27, G:0.08, T:0.35
Consensus pattern (48 bp):
TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
Found at i:81536145 original size:40 final size:40
Alignment explanation
Indices: 81536101--81536309 Score: 337
Period size: 40 Copynumber: 5.2 Consensus size: 40
81536091 CCTTCGAGGT
* *
81536101 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGACATAACACTAGCACGAATGCTCTTCGGGAC
* * *
81536141 TTAGCCCGGATATATCGCTAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGACATAACACTAGCACGAATGCTCTTCGGGAC
* * *
81536181 TTAGCCCGAACATAACACCAGCATGAATGCTCTTCGGGAC
1 TTAGCCCGGACATAACACTAGCACGAATGCTCTTCGGGAC
81536221 TTAGCCCGGACATAACACTAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGACATAACACTAGCACGAATGCTCTTCGGGAC
*
81536261 TTAGCCCGGACATAACACCAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGACATAACACTAGCACGAATGCTCTTCGGGAC
81536301 TTAGCCCGG
1 TTAGCCCGG
81536310 CTATATAACT
Statistics
Matches: 158, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 158 1.00
ACGTcount: A:0.26, C:0.30, G:0.23, T:0.22
Consensus pattern (40 bp):
TTAGCCCGGACATAACACTAGCACGAATGCTCTTCGGGAC
Found at i:81536190 original size:23 final size:23
Alignment explanation
Indices: 81536119--81536190 Score: 57
Period size: 23 Copynumber: 3.4 Consensus size: 23
81536109 GATATATCAC
81536119 TAGCACGAATGCTCTTCGGGACT
1 TAGCACGAATGCTCTTCGGGACT
* * * *
81536142 TAGCCCGGAT-AT-ATC--G-C-
1 TAGCACGAATGCTCTTCGGGACT
81536159 TAGCACGAATGCTCTTCGGGACT
1 TAGCACGAATGCTCTTCGGGACT
*
81536182 TAGCCCGAA
1 TAGCACGAA
81536191 CATAACACCA
Statistics
Matches: 34, Mismatches: 9, Indels: 12
0.62 0.16 0.22
Matches are distributed among these distances:
17 8 0.24
18 2 0.06
19 3 0.09
21 3 0.09
22 2 0.06
23 16 0.47
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.24
Consensus pattern (23 bp):
TAGCACGAATGCTCTTCGGGACT
Found at i:81536284 original size:120 final size:119
Alignment explanation
Indices: 81536079--81536308 Score: 372
Period size: 120 Copynumber: 1.9 Consensus size: 119
81536069 CCTCATAATT
* * *
81536079 CCAGCATGAATGCCTTCGAGGTTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTA
1 CCAGCATGAATGCCTTCGAGGCTTAGCCCGGACATAACACTAGCACGAATGCTCTTCGGGACTTA
* * * *
81536144 GCCCGGATATATCGCTAGCACGAATGCTCTTCGGGACTTAGCCCGAACATAACA
66 GCCCGGACATAACACCAGCACGAATGCTCTTCGGGACTTAGCCCGAACATAACA
81536198 CCAGCATGAATGCTCTTCG-GGACTTAGCCCGGACATAACACTAGCACGAATGCTCTTCGGGACT
1 CCAGCATGAATGC-CTTCGAGG-CTTAGCCCGGACATAACACTAGCACGAATGCTCTTCGGGACT
81536262 TAGCCCGGACATAACACCAGCACGAATGCTCTTCGGGACTTAGCCCG
64 TAGCCCGGACATAACACCAGCACGAATGCTCTTCGGGACTTAGCCCG
81536309 GCTATATAAC
Statistics
Matches: 102, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
119 15 0.15
120 87 0.85
ACGTcount: A:0.26, C:0.30, G:0.23, T:0.22
Consensus pattern (119 bp):
CCAGCATGAATGCCTTCGAGGCTTAGCCCGGACATAACACTAGCACGAATGCTCTTCGGGACTTA
GCCCGGACATAACACCAGCACGAATGCTCTTCGGGACTTAGCCCGAACATAACA
Found at i:81537647 original size:37 final size:37
Alignment explanation
Indices: 81537594--81537696 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
81537584 CGAATAGTCC
*
81537594 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
81537631 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
81537668 CCAAACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
81537697 ATATATTTCC
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:81537923 original size:48 final size:48
Alignment explanation
Indices: 81537869--81538234 Score: 579
Period size: 48 Copynumber: 7.6 Consensus size: 48
81537859 GCCGAATCAC
* **
81537869 TAGCCATTCAGCTTTACCACATATACATATCTCATACATATTTTGCAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* *
81537917 TAGCCATTCGGCTTTACCACGTATACATATCTCATACGTATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* * **
81537965 TAGCCATTGGGCTTTACCGCATATACATATCTCATATGTATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
81538013 TAGCCATTCGGTTTTACCACATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
81538061 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* * * *
81538109 TAGCCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCATAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* * *
81538157 TAGCCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCACAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
81538205 TAGCCATTCGGCTTTACCACATATACATAT
1 TAGCCATTCGGCTTTACCACATATACATAT
81538235 ATATTTATCT
Statistics
Matches: 297, Mismatches: 21, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 297 1.00
ACGTcount: A:0.30, C:0.26, G:0.09, T:0.35
Consensus pattern (48 bp):
TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
Found at i:81540574 original size:18 final size:17
Alignment explanation
Indices: 81540551--81540591 Score: 64
Period size: 18 Copynumber: 2.4 Consensus size: 17
81540541 TATTTTACTA
81540551 TTATTTTTATTTCTATTT
1 TTATTTTTATTTCTA-TT
*
81540569 TTATTTTTGTTTCTATT
1 TTATTTTTATTTCTATT
81540586 TTATTT
1 TTATTT
81540592 CAAATTCCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 8 0.36
18 14 0.64
ACGTcount: A:0.15, C:0.05, G:0.02, T:0.78
Consensus pattern (17 bp):
TTATTTTTATTTCTATT
Found at i:81548272 original size:46 final size:46
Alignment explanation
Indices: 81548123--81548296 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
81548113 TGTAACCCGC
* * *
81548123 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
81548169 CCAT-AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CTAGTT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--T
* *
81548214 ACATTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCA-TAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
81548260 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
81548297 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 1 0.01
43 3 0.03
45 34 0.31
46 65 0.60
47 1 0.01
48 4 0.04
49 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:81548315 original size:46 final size:46
Alignment explanation
Indices: 81548131--81548315 Score: 152
Period size: 46 Copynumber: 4.0 Consensus size: 46
81548121 GCCCATAAGC
* ** * *
81548131 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTC--GCATCCATAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCC-TAGT
* *
81548176 GAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATTC-A-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCCTAGT
* * * *
81548222 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--AAGT
1 GAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATCCTAGT
81548268 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
81548314 GA
1 GA
81548316 CATGTCACTT
Statistics
Matches: 113, Mismatches: 13, Indels: 27
0.74 0.08 0.18
Matches are distributed among these distances:
44 10 0.09
45 29 0.26
46 64 0.57
47 1 0.01
48 4 0.04
49 5 0.04
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
Found at i:81550717 original size:30 final size:29
Alignment explanation
Indices: 81550673--81550761 Score: 90
Period size: 30 Copynumber: 3.0 Consensus size: 29
81550663 CAAAGATAAC
81550673 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAAACCGAATAAAGAAATCCAAGATA
* *
81550702 GAGAAACCCGGAATAAAGAAATCC-AGAATA
1 AAGAAAACC-GAATAAAGAAATCCAAG-ATA
* * * *
81550732 AAGAGATCCAGCATAAAGAAACCCAAGATA
1 AAGAAAACC-GAATAAAGAAATCCAAGATA
81550762 CGATACTATG
Statistics
Matches: 49, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
29 9 0.18
30 38 0.78
31 2 0.04
ACGTcount: A:0.56, C:0.17, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAAACCGAATAAAGAAATCCAAGATA
Found at i:81550721 original size:15 final size:14
Alignment explanation
Indices: 81550673--81550752 Score: 70
Period size: 15 Copynumber: 5.4 Consensus size: 14
81550663 CAAAGATAAC
*
81550673 AAGAAAACCGAATA
1 AAGAAATCCGAATA
*
81550687 AAGAAATCCAAGATA
1 AAGAAATCCGA-ATA
* *
81550702 GAGAAACCCGGAATA
1 AAGAAATCC-GAATA
81550717 AAGAAATCCAGAATA
1 AAGAAATCC-GAATA
* *
81550732 AAGAGATCCAGCATA
1 AAGAAATCC-GAATA
81550747 AAGAAA
1 AAGAAA
81550753 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 11, Indels: 3
0.79 0.16 0.04
Matches are distributed among these distances:
14 9 0.17
15 43 0.81
16 1 0.02
ACGTcount: A:0.57, C:0.15, G:0.17, T:0.10
Consensus pattern (14 bp):
AAGAAATCCGAATA
Found at i:81554285 original size:47 final size:47
Alignment explanation
Indices: 81554094--81554507 Score: 677
Period size: 47 Copynumber: 8.7 Consensus size: 47
81554084 TTAGGATTCT
* * *
81554094 ATGTGATGGATGTGAAA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
81554140 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
81554189 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
81554238 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
81554285 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
81554332 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
81554379 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
81554426 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
81554473 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
81554508 TCCCGAAGGG
Statistics
Matches: 350, Mismatches: 15, Indels: 5
0.95 0.04 0.01
Matches are distributed among these distances:
46 16 0.05
47 241 0.69
49 93 0.27
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:81557858 original size:93 final size:93
Alignment explanation
Indices: 81557699--81557870 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
81557689 CGCCCATAAG
* * * *
81557699 CGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAGGTGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
81557764 ACGAGTTCGGATGCCTAGTTACATTTCA
66 ACGAGTTCGGATGCCTAGTTACATTTCA
* *
81557792 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
81557857 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
81557871 TCAACCATCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATTTCA
Found at i:81557860 original size:46 final size:46
Alignment explanation
Indices: 81557692--81557867 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
81557682 TGTAACCCGC
* * * *
81557692 CCATAAGCGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * * *
81557738 CCATAGGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
81557788 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
81557831 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
81557868 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 17, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 60 0.58
47 28 0.27
48 1 0.01
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:81557886 original size:46 final size:45
Alignment explanation
Indices: 81557744--81557886 Score: 123
Period size: 46 Copynumber: 3.1 Consensus size: 45
81557734 GCATCCATAG
* *
81557744 GTGAACTCAGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATTTCA
1 GTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCT-A
* * * * *
81557792 -CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-AA
1 GTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATCTA
81557837 GTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTA
1 GTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT-CTA
81557883 GTGA
1 GTGA
81557887 CATGTCACTT
Statistics
Matches: 78, Mismatches: 10, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
44 9 0.12
45 1 0.01
46 33 0.42
47 30 0.38
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (45 bp):
GTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCTA
Found at i:81561064 original size:15 final size:15
Alignment explanation
Indices: 81561031--81561075 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
81561021 TGCCCAAATG
*
81561031 AAGAAAA-AG-AAAG
1 AAGAAAAGAGAAAAA
*
81561044 AAGAAAAGGGAAAAA
1 AAGAAAAGAGAAAAA
81561059 AAGAAAAGAGAAAAA
1 AAGAAAAGAGAAAAA
81561074 AA
1 AA
81561076 AACTCAAGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
13 7 0.26
14 1 0.04
15 19 0.70
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (15 bp):
AAGAAAAGAGAAAAA
Found at i:81570934 original size:42 final size:42
Alignment explanation
Indices: 81570886--81571037 Score: 189
Period size: 42 Copynumber: 3.6 Consensus size: 42
81570876 AGATTATGTT
* *
81570886 TAAGACCATATCTGGGATATGACATCAATATGAGACTTCGTG
1 TAAGACCATATCTGGGATATGGCATCGATATGAGACTTCGTG
* *
81570928 TAAGACCATATATGGGATATGGCATCGACATGAGACTTCGTG
1 TAAGACCATATCTGGGATATGGCATCGATATGAGACTTCGTG
* * * * * *
81570970 TAAAACCATAGCAGGGCTATTGGCATCGATACGAGA-TTACATG
1 TAAGACCATATCTGGGATA-TGGCATCGATATGAGACTT-CGTG
81571013 TAAGACCATATCTGGGATATGGCAT
1 TAAGACCATATCTGGGATATGGCAT
81571038 TAGTATGGTA
Statistics
Matches: 92, Mismatches: 16, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
42 60 0.65
43 32 0.35
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.26
Consensus pattern (42 bp):
TAAGACCATATCTGGGATATGGCATCGATATGAGACTTCGTG
Found at i:81573955 original size:13 final size:13
Alignment explanation
Indices: 81573937--81573963 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
81573927 TTAAAACAGG
81573937 AGCCTGAGTTAGA
1 AGCCTGAGTTAGA
81573950 AGCCTGAGTTAGA
1 AGCCTGAGTTAGA
81573963 A
1 A
81573964 CAGACTTGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.15, G:0.30, T:0.22
Consensus pattern (13 bp):
AGCCTGAGTTAGA
Found at i:81578287 original size:47 final size:47
Alignment explanation
Indices: 81578231--81578455 Score: 244
Period size: 47 Copynumber: 4.8 Consensus size: 47
81578221 TGGGTAAGGT
*
81578231 GCCGATGCCAAGTCCCAGACATGGTCTTACACTGGCTCATATCTCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAA
* * **
81578278 GTCGATGCCATGTCCCAGACATGGTCTTACACTGAC-CATCATCTTGTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCAT-ATC-TCAA
* * *
81578326 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTC-AA
* * * *
81578372 GCCGATG-CATGTCTCAGACAT-GTCTTACACTAGCTCTTGTCTCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAA
* * *
81578417 TACCGATGCCATGTCCTAGACATGGTCTTACACCGGCTC
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC
81578456 TCATAATGTG
Statistics
Matches: 147, Mismatches: 24, Indels: 13
0.80 0.13 0.07
Matches are distributed among these distances:
45 2 0.01
46 61 0.41
47 63 0.43
48 21 0.14
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.27
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAA
Found at i:81578358 original size:93 final size:94
Alignment explanation
Indices: 81578231--81578497 Score: 251
Period size: 94 Copynumber: 2.9 Consensus size: 94
81578221 TGGGTAAGGT
* *
81578231 GCCGATGCCAAGTCCCAGACATGGTCTTACACTGGCTCATATCTC-AAGTCGATGCCATGTCCCA
1 GCCGATGCCAAGTCCCAGACATGGTCTTACACTGGCTCACATCTCGAAGCCGATG-CATGTCCCA
81578295 GACATGGTCTTACACTGACCATCATCTTGTA
65 GACAT-GTCTTACACTGACCATCATCTTGTA
* * * *
81578326 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCGAGGCCGATGCATGTCTCAG
1 GCCGATGCCAAGTCCCAGACATGGTCTTACACTGGCTCACATCTCGAAGCCGATGCATGTCCCAG
** **
81578389 ACATGTCTTACACT-AGCTC-TTGTCTCAATA
66 ACATGTCTTACACTGA-C-CATCATCT-TGTA
* * * * * ** **
81578419 -CCGATGCCATGTCCTAGACATGGTCTTACACCGGCTCTCATAAT-GTGGTTGATGCATGTCCCA
1 GCCGATGCCAAGTCCCAGACATGGTCTTACACTGGCTCACAT-CTCGAAGCCGATGCATGTCCCA
*
81578482 GACATGCCTTACACTG
65 GACATGTCTTACACTG
81578498 GCTCACAAAC
Statistics
Matches: 144, Mismatches: 20, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
91 1 0.01
92 21 0.15
93 49 0.34
94 65 0.45
95 8 0.06
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.28
Consensus pattern (94 bp):
GCCGATGCCAAGTCCCAGACATGGTCTTACACTGGCTCACATCTCGAAGCCGATGCATGTCCCAG
ACATGTCTTACACTGACCATCATCTTGTA
Found at i:81578367 original size:46 final size:48
Alignment explanation
Indices: 81578231--81578500 Score: 204
Period size: 47 Copynumber: 5.8 Consensus size: 48
81578221 TGGGTAAGGT
* * * **
81578231 GCCGATGCCAAGTCCCAGACATGGTCTTACACTGGCTCATATC-TCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTTGTA
* * *
81578278 GTCGATGCCATGTCCCAGACATGGTCTTACACTGAC-CATCATCTTGTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTA-CATCTTGTA
*
81578326 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCG-A
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTTGTA
* * ** **
81578371 GGCCGATG-CATGTCTCAGACAT-GTCTTACACTAGCTCT-TGTCTCAATA
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TACATCT-TGTA
* * ** *
81578419 -CCGATGCCATGTCCTAGACATGGTCTTACACCGGCTCT-CATAATGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TACATCTTGTA
** *
81578466 GTTGATG-CATGTCCCAGACAT-GCCTTACACTGGCT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT
81578501 CACAAACATA
Statistics
Matches: 181, Mismatches: 32, Indels: 21
0.77 0.14 0.09
Matches are distributed among these distances:
45 1 0.01
46 74 0.41
47 78 0.43
48 28 0.15
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.28
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTTGTA
Found at i:81578498 original size:140 final size:141
Alignment explanation
Indices: 81578231--81578500 Score: 359
Period size: 140 Copynumber: 1.9 Consensus size: 141
81578221 TGGGTAAGGT
*
81578231 GCCGATGCCAAGTCCCAGACATGGTCTTACACTGGCTCATATCTCAAGTCGATGCCATGTCCCAG
1 GCCGATGCCAAGTCCCAGACATGGTCTTACACTAGCTCATATCTCAAGTCGATGCCATGTCCCAG
* ** *
81578296 ACATGGTCTTACACTGACCATCATCTTGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCT
66 ACATGGTCTTACACCGACCATCATAATGTAGCCGATGCATGTCCCAGACATGCCTTACACTGGCT
81578361 TACATCTCGAG
131 TACATCTCGAG
* * * * *
81578372 GCCGATG-CATGTCTCAGACAT-GTCTTACACTAGCTCTTGTCTCAA-TACCGATGCCATGTCCT
1 GCCGATGCCAAGTCCCAGACATGGTCTTACACTAGCTCATATCTCAAGT--CGATGCCATGTCCC
* * **
81578434 AGACATGGTCTTACACCGGCTC-TCATAATGTGGTTGATGCATGTCCCAGACATGCCTTACACTG
64 AGACATGGTCTTACACCGAC-CATCATAATGTAGCCGATGCATGTCCCAGACATGCCTTACACTG
81578498 GCT
128 GCT
81578501 CACAAACATA
Statistics
Matches: 112, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
138 1 0.01
139 21 0.19
140 82 0.73
141 8 0.07
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.28
Consensus pattern (141 bp):
GCCGATGCCAAGTCCCAGACATGGTCTTACACTAGCTCATATCTCAAGTCGATGCCATGTCCCAG
ACATGGTCTTACACCGACCATCATAATGTAGCCGATGCATGTCCCAGACATGCCTTACACTGGCT
TACATCTCGAG
Found at i:81582162 original size:127 final size:127
Alignment explanation
Indices: 81582024--81582320 Score: 382
Period size: 127 Copynumber: 2.3 Consensus size: 127
81582014 TCTAGCCCTG
* *
81582024 TAGGGCACGATTCCTCGAATTTCCAAACATTGAACATTGCCTTGCTCTAGAATTTATAAAACCCG
1 TAGGGCACGATTCCTCGAATTTCCAAACATTGAACATTGCCTTGCTCTAGAATTTAGAAAACACG
* *
81582089 AGTAAAATTCTAAAGGAATATTCAATCATTTTGAACAAACCGGAAATCGAAACCTAGCACGA
66 AGTAAAATTCTAAAGGAATATTCAATCATTTTGAACAAACCGGAAATCAAAACCCAGCACGA
* * * * * * * *
81582151 TTGGGTACGATT-CTCCGCATTTCCAAACATTGAATATTGCCTTGTTTTAGTATTTGGAAAACAC
1 TAGGGCACGATTCCT-CGAATTTCCAAACATTGAACATTGCCTTGCTCTAGAATTTAGAAAACAC
* * * * *
81582215 GAGTGAAATTCTAAAGGAATATTCGATTATTTTGAACGAACGGGAAATCAAAACCCAGCACGA
65 GAGTAAAATTCTAAAGGAATATTCAATCATTTTGAACAAACCGGAAATCAAAACCCAGCACGA
* **
81582278 TAGGGCACGATTCC-CTGAATTTCTAAACATCAAACATTGCCTT
1 TAGGGCACGATTCCTC-GAATTTCCAAACATTGAACATTGCCTT
81582321 TGTTTTAAAG
Statistics
Matches: 143, Mismatches: 24, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
126 3 0.02
127 139 0.97
128 1 0.01
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.28
Consensus pattern (127 bp):
TAGGGCACGATTCCTCGAATTTCCAAACATTGAACATTGCCTTGCTCTAGAATTTAGAAAACACG
AGTAAAATTCTAAAGGAATATTCAATCATTTTGAACAAACCGGAAATCAAAACCCAGCACGA
Found at i:81583004 original size:25 final size:26
Alignment explanation
Indices: 81582950--81583005 Score: 64
Period size: 25 Copynumber: 2.2 Consensus size: 26
81582940 AGGTAATAAG
81582950 TTATATACATAATAGATTAAAAAACA
1 TTATATACATAATAGATTAAAAAACA
* *
81582976 -TATATATA-AATA-ATTTAAAAACAA
1 TTATATACATAATAGATTAAAAAAC-A
81583000 TTATAT
1 TTATAT
81583006 GAAAAAATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 9 0.35
24 5 0.19
25 12 0.46
ACGTcount: A:0.57, C:0.05, G:0.02, T:0.36
Consensus pattern (26 bp):
TTATATACATAATAGATTAAAAAACA
Found at i:81583005 original size:23 final size:24
Alignment explanation
Indices: 81582951--81582998 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
81582941 GGTAATAAGT
*
81582951 TATATACATAATAGATTAAAAAACA
1 TATATATA-AATAGATTAAAAAACA
*
81582976 TATATATAAATA-ATTTAAAAACA
1 TATATATAAATAGATTAAAAAACA
81582999 ATTATATGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 10 0.48
24 4 0.19
25 7 0.33
ACGTcount: A:0.60, C:0.06, G:0.02, T:0.31
Consensus pattern (24 bp):
TATATATAAATAGATTAAAAAACA
Found at i:81584688 original size:16 final size:16
Alignment explanation
Indices: 81584669--81584707 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
81584659 CCGATGTAAT
81584669 TTTGGGTCTAGATTTA
1 TTTGGGTCTAGATTTA
*
81584685 TTTGGGTCTAGGTTTA
1 TTTGGGTCTAGATTTA
81584701 TTTGGGT
1 TTTGGGT
81584708 TTGTATTGGG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.13, C:0.05, G:0.31, T:0.51
Consensus pattern (16 bp):
TTTGGGTCTAGATTTA
Found at i:81588030 original size:42 final size:42
Alignment explanation
Indices: 81587951--81588032 Score: 103
Period size: 42 Copynumber: 2.0 Consensus size: 42
81587941 TGTGTAGAGG
* **
81587951 ACACACGGCCTAGACACACTCCCGTGGGGTAGACCATGTGTC
1 ACACACGGCCTAGACACACACCCGTGGCCTAGACCATGTGTC
* *
81587993 ACACACGGCCTAGACACACACCTGTGTGCCTA-CCCATGTG
1 ACACACGGCCTAGACACACACCCGTG-GCCTAGACCATGTG
81588033 GACAGTATAA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
42 31 0.91
43 3 0.09
ACGTcount: A:0.24, C:0.35, G:0.23, T:0.17
Consensus pattern (42 bp):
ACACACGGCCTAGACACACACCCGTGGCCTAGACCATGTGTC
Found at i:81588822 original size:46 final size:46
Alignment explanation
Indices: 81588718--81588987 Score: 146
Period size: 46 Copynumber: 5.8 Consensus size: 46
81588708 TGGGTAAGGT
*
81588718 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCATATCTAA
** *
81588764 GTTGATGCCATGTCCCAGACATGGTCTTA-ACTGAC-CATCATCTCGTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCAT-ATCT--AA
* * * * * * * *
81588811 GCCGATG-CATGTTCTAGTCAT-GTCTTACACTGGCTGACGTCTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACT--CATATCTAA
* * * * *
81588857 GCCAAT-ACATGTCCTAGACAT-GTCTTACACT-AGCTCTTGTCTTAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGA-CTCATATC-TAA
* * * * *
81588902 TGCCGATACCATGTCCCAGACATGGTCTCACACTGGCTCTCATAATGT-G
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACT-G-ACTCAT-ATCTAA
* * *
81588951 GCTGATG-CATTTCCCAGACAT-GTCTTACACTGGCTCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCA
81588988 CAAACAAATG
Statistics
Matches: 170, Mismatches: 37, Indels: 36
0.70 0.15 0.15
Matches are distributed among these distances:
44 11 0.06
45 17 0.10
46 86 0.51
47 32 0.19
48 16 0.09
49 2 0.01
50 5 0.03
51 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.29
Consensus pattern (46 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCATATCTAA
Done.