Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 236 of 295
Found at i:81588981 original size:140 final size:138
Alignment explanation
Indices: 81588726--81588985 Score: 312
Period size: 140 Copynumber: 1.9 Consensus size: 138
81588716 GTGCCGATGC
* ** *
81588726 CATGTCCCAGACATGGTCTTACACTGGCTCATATCTAAGTTGATGCCATGTCCCAGACATGGTCT
1 CATGTCCCAGACATGGTCTTACACTAGCTCATATCTAAGCCGATACCATGTCCCAGACATGGTCT
* * * *
81588791 TAACTGACCATCATCTCGTAGCCGATGCATGTTCTAGTCATGTCTTACACTGGCTGACGTCTCGA
66 CAACTGACCATCATATCGTAGCCGATGCATGTTCCAGACATGTCTTACACTGGCTGACGTCTCGA
81588856 GGCCAATA
131 GGCCAATA
* * *
81588864 CATGTCCTAGACAT-GTCTTACACTAGCTCTTGTCTTAATGCCGATACCATGTCCCAGACATGGT
1 CATGTCCCAGACATGGTCTTACACTAGCTCATATC-TAA-GCCGATACCATGTCCCAGACATGGT
* * *
81588928 CTCACACTGGCTC-TCATAAT-GTGGCTGATGCAT-TTCCCAGACATGTCTTACACTGGCT
64 CTCA-ACTGAC-CATCAT-ATCGTAGCCGATGCATGTT-CCAGACATGTCTTACACTGGCT
81588986 CACAAACAAA
Statistics
Matches: 102, Mismatches: 14, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
137 17 0.17
138 16 0.16
139 27 0.26
140 40 0.39
141 2 0.02
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (138 bp):
CATGTCCCAGACATGGTCTTACACTAGCTCATATCTAAGCCGATACCATGTCCCAGACATGGTCT
CAACTGACCATCATATCGTAGCCGATGCATGTTCCAGACATGTCTTACACTGGCTGACGTCTCGA
GGCCAATA
Found at i:81591959 original size:32 final size:32
Alignment explanation
Indices: 81591914--81591977 Score: 92
Period size: 32 Copynumber: 2.0 Consensus size: 32
81591904 TACCTGATCA
* * *
81591914 GAACAGATGAGGATACTATTGACGCATTTAGT
1 GAACAAATAAGGATACTACTGACGCATTTAGT
*
81591946 GAACAAATAAGGATACTACTGATGCATTTAGT
1 GAACAAATAAGGATACTACTGACGCATTTAGT
81591978 CCTCAGGTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.38, C:0.12, G:0.22, T:0.28
Consensus pattern (32 bp):
GAACAAATAAGGATACTACTGACGCATTTAGT
Found at i:81594384 original size:40 final size:40
Alignment explanation
Indices: 81594300--81594483 Score: 189
Period size: 40 Copynumber: 4.6 Consensus size: 40
81594290 TTGAATGCTG
* * * *
81594300 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
81594339 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
81594380 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
*
81594420 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT--AAT
81594461 T-CGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
81594484 GAATGAGTTA
Statistics
Matches: 123, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
39 2 0.02
40 107 0.87
41 14 0.11
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:81594437 original size:80 final size:81
Alignment explanation
Indices: 81594300--81594480 Score: 214
Period size: 80 Copynumber: 2.3 Consensus size: 81
81594290 TTGAATGCTG
* * *
81594300 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGTATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
*
81594364 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAT
**
81594380 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
81594441 ATTCGTGCGAGTTTTAAAAT
63 ATTCGTGCGAGTTTT-AAAT
81594461 T-CGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
81594481 ATTGAATGAG
Statistics
Matches: 89, Mismatches: 6, Indels: 12
0.83 0.06 0.11
Matches are distributed among these distances:
79 4 0.04
80 72 0.81
81 13 0.15
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAT
Found at i:81606340 original size:42 final size:43
Alignment explanation
Indices: 81606273--81606372 Score: 121
Period size: 42 Copynumber: 2.3 Consensus size: 43
81606263 GATTTGTGAT
* * *
81606273 TTACGTGTAAGACCATGTCTGGGACATTGGCATC-GTATATAA
1 TTACATGTAAGACCATGTCAGGGACAGTGGCATCGGTATATAA
* * * * *
81606315 TTTCATGTAATACCCTGTCAGGGACAGTGGCATCGGTATTTGA
1 TTACATGTAAGACCATGTCAGGGACAGTGGCATCGGTATATAA
81606358 TTACATGTAAGACCA
1 TTACATGTAAGACCA
81606373 CGTCGGTATT
Statistics
Matches: 46, Mismatches: 11, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
42 28 0.61
43 18 0.39
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (43 bp):
TTACATGTAAGACCATGTCAGGGACAGTGGCATCGGTATATAA
Found at i:81609079 original size:29 final size:29
Alignment explanation
Indices: 81609018--81609106 Score: 117
Period size: 29 Copynumber: 3.1 Consensus size: 29
81609008 CACATACTTG
* *
81609018 TATATGGCCCACTAGGCCC-AATCACGTT
1 TATATGGCCCATTAGGCCCAAATCACATT
* *
81609046 TATATAGCCCATTAGGCCCAAATCATATT
1 TATATGGCCCATTAGGCCCAAATCACATT
* *
81609075 TATATGGCCCATCAGGCCCAATTCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
81609104 TAT
1 TAT
81609107 GGTCATGCTC
Statistics
Matches: 52, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
28 17 0.33
29 35 0.67
ACGTcount: A:0.29, C:0.28, G:0.13, T:0.29
Consensus pattern (29 bp):
TATATGGCCCATTAGGCCCAAATCACATT
Found at i:81614602 original size:50 final size:50
Alignment explanation
Indices: 81614490--81614859 Score: 279
Period size: 50 Copynumber: 7.7 Consensus size: 50
81614480 AGGGTAAGAT
* * * * * * * *
81614490 GCCGATGTCATGTCCTAAAAATGGTCTTACACTG--GCTCACACATCAAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCGAG
* * *
81614538 GTCGATGCCATGTCCCAGACTTGGTCTTTCACTGACTCTCATATATCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCGAG
* * * * * *
81614588 GCTGATGCCATGTCCCAAACATGGACTTACACTG-GTCCTCATCTGTCG-G
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACT-CTCATATATCGAG
** * *
81614637 TGCTAATGCCATGTCCCAGACATGGTCTTACACTGA----CACATATC-AA
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCGAG
* * * *
81614683 GCCGATGCCATGTCCTAGACATGGTATTACACT-AGCTTTCATATCTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGA-CTCTCATATATCGAG
* * * *
81614733 GCCGATGCCATGTCCCAGATATGGTCTTACACT-AGCTCTC--ATCTCCAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGA-CTCTCATATATCGAG
* * * *
81614781 GCCGATGCCATGTCACAAACATGGTCTTACACTGGCTCTCATA-AT-GTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCGAG
*
81614829 GCTGATG-CATGTCCCAGACAT-GTCTTACACT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT
81614860 AGCACACATG
Statistics
Matches: 256, Mismatches: 51, Indels: 32
0.76 0.15 0.09
Matches are distributed among these distances:
44 1 0.00
45 29 0.11
46 15 0.06
47 12 0.05
48 74 0.29
49 9 0.04
50 116 0.45
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (50 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCGAG
Found at i:81614741 original size:95 final size:96
Alignment explanation
Indices: 81614642--81614868 Score: 277
Period size: 95 Copynumber: 2.4 Consensus size: 96
81614632 GTCGGTGCTA
*
81614642 ATGCCATGTCCCAGACATGGTCTTACACT-G-ACACATAT-CAAGCCGATGCCATGTC-CTAGAC
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCCAAGCCGATGCCATGTCAC-AAAC
* *
81614703 ATGGTATTACACTAGCTTTCATATCTCGAGGCCG
65 ATGGTATTACACTAGCTCTCATA-AT-GAGGCCG
* * * * *
81614737 ATGCCATGTCCCAGATATGGTCTTACACTAGCTCTCATCTCCATGCCGATGCCATGTCACAAACA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCCAAGCCGATGCCATGTCACAAACA
* * * *
81614802 TGGTCTTACACTGGCTCTCATAATGTGGCTG
66 TGGTATTACACTAGCTCTCATAATGAGGCCG
81614833 ATG-CATGTCCCAGACAT-GTCTTACACTAGCACACAT
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACACAT
81614869 GTCACCCAAA
Statistics
Matches: 113, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
94 17 0.15
95 41 0.36
96 9 0.08
97 6 0.05
98 39 0.35
99 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (96 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCCAAGCCGATGCCATGTCACAAACA
TGGTATTACACTAGCTCTCATAATGAGGCCG
Found at i:81614840 original size:145 final size:144
Alignment explanation
Indices: 81614488--81614862 Score: 370
Period size: 145 Copynumber: 2.6 Consensus size: 144
81614478 ATAGGGTAAG
* * *
81614488 ATGCCGATGTCATGTCCTAAAAATGGTCTTACACTGGCTCACACATCAA-GGTCGATGCCATGTC
1 ATGCCGATGCCATGTCC-AAACATGGTCTTACACTGGCT--CACAT-AATGGGCGATGCCATGTC
* * *
81614552 CCAGACTTGGTCTTTCACT-GACTCTCATATATCGAGGCTGATGCCATGTCCCAAACATGGACTT
62 CCAGACATGGTCTTACACTAG-CTCTCATATATCGAGGCCGATGCCATGTCCCAAACATGGACTT
* *
81614616 ACACTGGTCCTCATCTGTCG
126 ACACTGCTCCTCATC-GTCC
* ** * * * * * *
81614636 GTGCTAATGCCATGTCCCAGACATGGTCTTACACTGACACATATCAA--GCCGATGCCATGTCCT
1 ATGCCGATGCCATGT-CCAAACATGGTCTTACACTGGCTCACAT-AATGGGCGATGCCATGTCCC
* * * * * *
81614699 AGACATGGTATTACACTAGCTTTCATATCTCGAGGCCGATGCCATGTCCCAGATATGGTCTTACA
64 AGACATGGTCTTACACTAGCTCTCATATATCGAGGCCGATGCCATGTCCCAAACATGGACTTACA
81614764 CTAGCT-CTCATC-TCC
129 CT-GCTCCTCATCGTCC
*
81614779 ATGCCGATGCCATGTCACAAACATGGTCTTACACTGGCTCTCATAATGTGGCTGATG-CATGTCC
1 ATGCCGATGCCATGTC-CAAACATGGTCTTACACTGGCTCACATAATG-GGC-GATGCCATGTCC
81614843 CAGACAT-GTCTTACACTAGC
63 CAGACATGGTCTTACACTAGC
81614863 ACACATGTCA
Statistics
Matches: 186, Mismatches: 33, Indels: 20
0.78 0.14 0.08
Matches are distributed among these distances:
142 3 0.02
143 36 0.19
144 12 0.06
145 91 0.49
146 14 0.08
148 28 0.15
149 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (144 bp):
ATGCCGATGCCATGTCCAAACATGGTCTTACACTGGCTCACATAATGGGCGATGCCATGTCCCAG
ACATGGTCTTACACTAGCTCTCATATATCGAGGCCGATGCCATGTCCCAAACATGGACTTACACT
GCTCCTCATCGTCC
Found at i:81616489 original size:17 final size:18
Alignment explanation
Indices: 81616467--81616500 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
81616457 TGTTGAATTG
81616467 AAATTGC-AAAATTAAAT
1 AAATTGCGAAAATTAAAT
81616484 AAATTGCGAAAATTAAA
1 AAATTGCGAAAATTAAA
81616501 ATGAAGAGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.59, C:0.06, G:0.09, T:0.26
Consensus pattern (18 bp):
AAATTGCGAAAATTAAAT
Found at i:81617220 original size:20 final size:20
Alignment explanation
Indices: 81617197--81617236 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
81617187 TTAAATTCTA
81617197 AAAGATAATTACAA-ATAAAT
1 AAAGATAATTA-AAGATAAAT
*
81617217 AAAGATGATTAAAGATAAAT
1 AAAGATAATTAAAGATAAAT
81617237 GAAAATAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 2 0.11
20 16 0.89
ACGTcount: A:0.62, C:0.03, G:0.10, T:0.25
Consensus pattern (20 bp):
AAAGATAATTAAAGATAAAT
Found at i:81618829 original size:5 final size:5
Alignment explanation
Indices: 81618819--81618872 Score: 60
Period size: 5 Copynumber: 11.0 Consensus size: 5
81618809 CAACATCCAA
*
81618819 AAAAT AAAAT AAAAT AAAAT GAAAT --AAT AAATATT AAAAT -AAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA-A-T AAAAT AAAAT AAAAT
81618868 AAAAT
1 AAAAT
81618873 TAATAAAAAA
Statistics
Matches: 43, Mismatches: 1, Indels: 10
0.80 0.02 0.19
Matches are distributed among these distances:
3 3 0.07
4 4 0.09
5 30 0.70
6 2 0.05
7 4 0.09
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.24
Consensus pattern (5 bp):
AAAAT
Found at i:81618857 original size:30 final size:30
Alignment explanation
Indices: 81618823--81618879 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
81618813 ATCCAAAAAA
*
81618823 TAAAATAAAATAAAATGAAA-TAATAAATAT
1 TAAAAT-AAATAAAATAAAATTAATAAATAT
81618853 TAAAATAAATAAAATAAAATTAATAAA
1 TAAAATAAATAAAATAAAATTAATAAA
81618880 AAAATTGGGT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
29 12 0.48
30 13 0.52
ACGTcount: A:0.72, C:0.00, G:0.02, T:0.26
Consensus pattern (30 bp):
TAAAATAAATAAAATAAAATTAATAAATAT
Found at i:81624484 original size:17 final size:18
Alignment explanation
Indices: 81624458--81624491 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
81624448 AGTTGAATTG
*
81624458 AAATTTTGAAA-TTAAAT
1 AAATTGTGAAAGTTAAAT
81624475 AAATTGTGAAAGTTAAA
1 AAATTGTGAAAGTTAAA
81624492 ATGAAGAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.53, C:0.00, G:0.12, T:0.35
Consensus pattern (18 bp):
AAATTGTGAAAGTTAAAT
Found at i:81626976 original size:23 final size:23
Alignment explanation
Indices: 81626942--81626987 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
81626932 TAATAAGTTA
*
81626942 GAATAAATAATAGATGGATCAGT
1 GAATAAAAAATAGATGGATCAGT
*
81626965 GAATAAAAAATAGATTGATCAGT
1 GAATAAAAAATAGATGGATCAGT
81626988 TCCAAAGATG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.50, C:0.04, G:0.20, T:0.26
Consensus pattern (23 bp):
GAATAAAAAATAGATGGATCAGT
Found at i:81646317 original size:18 final size:17
Alignment explanation
Indices: 81646294--81646336 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
81646284 ATTTGAGAGA
*
81646294 GGATGATGAATGAGTGAG
1 GGATGATGAAGGA-TGAG
*
81646312 GGATGAATGAGGGATGAG
1 GGATG-ATGAAGGATGAG
81646330 GGATGAT
1 GGATGAT
81646337 TGAAAAACTG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 2 0.09
18 14 0.64
19 6 0.27
ACGTcount: A:0.33, C:0.00, G:0.47, T:0.21
Consensus pattern (17 bp):
GGATGATGAAGGATGAG
Found at i:81647157 original size:43 final size:42
Alignment explanation
Indices: 81647069--81647179 Score: 143
Period size: 43 Copynumber: 2.6 Consensus size: 42
81647059 TCAGTTTGCA
* * *
81647069 GTAAGACCATATCTGGGATATGGCATCAATATGAGGATTCGT
1 GTAAGACCATATCTGGGATATGGCATCAATACGAGGATCCAT
* * *
81647111 GTAAGACCATAGCTGGGCTATTGGCATCGATACGA-GATCCCAT
1 GTAAGACCATATCTGGGATA-TGGCATCAATACGAGGAT-CCAT
81647154 GTAAGACCATATCTGGGATATGGCAT
1 GTAAGACCATATCTGGGATATGGCAT
81647180 TGGTATGGTA
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
42 27 0.46
43 32 0.54
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (42 bp):
GTAAGACCATATCTGGGATATGGCATCAATACGAGGATCCAT
Found at i:81660704 original size:39 final size:39
Alignment explanation
Indices: 81660606--81660776 Score: 191
Period size: 40 Copynumber: 4.3 Consensus size: 39
81660596 CATTTGAATG
* *
81660606 ATATCTGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGA-T
* *
81660646 TTATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGAT
* * *
81660685 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGAT
* * * * * *
81660725 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGT-GAT
81660765 ATATCC-GGCTAA
1 ATATCCGGGCTAA
81660777 ATTCCGAAGA
Statistics
Matches: 114, Mismatches: 15, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
39 38 0.33
40 76 0.67
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGAT
Found at i:81660744 original size:79 final size:80
Alignment explanation
Indices: 81660606--81660776 Score: 195
Period size: 79 Copynumber: 2.2 Consensus size: 80
81660596 CATTTGAATG
* * * * * * *
81660606 ATATCTGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGACTATACCCGGGCTAAGACCCGAAGGCA
*
81660671 TTTATGCTAGT-GAT
66 ATTATGCTAGTGGAT
* *
81660685 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATACCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAG-TGACTATACCCGGGCTAAGACCCGAAGGC
* * *
81660749 AATTGTGCTTGTGGTT
65 AATTATGCTAGTGGAT
81660765 ATATCC-GGCTAA
1 ATATCCGGGCTAA
81660777 ATTCCGAAGA
Statistics
Matches: 77, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
79 67 0.87
80 10 0.13
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGACTATACCCGGGCTAAGACCCGAAGGCA
ATTATGCTAGTGGAT
Found at i:81663649 original size:40 final size:40
Alignment explanation
Indices: 81663584--81663726 Score: 227
Period size: 40 Copynumber: 3.5 Consensus size: 40
81663574 ATATGAGGAG
81663584 CCGGAGCTATAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
1 CCGG-GCTA-AGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
81663626 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG-TATGT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
*
81663665 CCGGGCTAAGT-CCGAAGAGCATTCGTGCTGGTGTTAATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTT-ATGT
*
81663705 CCGGGCTAGGTCCCGAAGAGCA
1 CCGGGCTAAGTCCCGAAGAGCA
81663727 ATCATGCTTG
Statistics
Matches: 96, Mismatches: 2, Indels: 7
0.91 0.02 0.07
Matches are distributed among these distances:
38 22 0.23
39 17 0.18
40 39 0.41
41 14 0.15
42 4 0.04
ACGTcount: A:0.20, C:0.23, G:0.32, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
Found at i:81663688 original size:78 final size:82
Alignment explanation
Indices: 81663584--81663743 Score: 240
Period size: 79 Copynumber: 2.0 Consensus size: 82
81663574 ATATGAGGAG
*
81663584 CCGGAGCTATAGTCCCGAAGAGCATTCGTGCTGGTGTT-ATGTCCGGGCTAAGTCCCGAAGAGCA
1 CCGGAGCTATAGTCCCGAAGAGCATTCGTGCTGGTGTTAATATCCGGGCTAAGTCCCGAAGAGCA
* *
81663648 TTCGTGC-TGGTGTATGT
66 ATCATGCTTGGTG-ATGT
*
81663665 CCGG-GCTA-AGT-CCGAAGAGCATTCGTGCTGGTGTTAATATCCGGGCTAGGTCCCGAAGAGCA
1 CCGGAGCTATAGTCCCGAAGAGCATTCGTGCTGGTGTTAATATCCGGGCTAAGTCCCGAAGAGCA
81663727 ATCATGCTTGGTGATGT
66 ATCATGCTTGGTGATGT
81663744 GTATTCGGGC
Statistics
Matches: 73, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
78 24 0.33
79 36 0.49
80 9 0.12
81 4 0.05
ACGTcount: A:0.20, C:0.22, G:0.32, T:0.26
Consensus pattern (82 bp):
CCGGAGCTATAGTCCCGAAGAGCATTCGTGCTGGTGTTAATATCCGGGCTAAGTCCCGAAGAGCA
ATCATGCTTGGTGATGT
Found at i:81667645 original size:47 final size:47
Alignment explanation
Indices: 81667591--81667757 Score: 185
Period size: 47 Copynumber: 3.6 Consensus size: 47
81667581 GATTTTATGA
** * * *
81667591 GATGAATGTGAATGTGTATATATGAGATAAGGCCTAATGGGCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGGCAATGT
* *
81667638 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGGCAATGT
* **
81667685 GATGAATGTGAACATGCATATGTGTGATAAGGTAGAAT-GGCTAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGGC-AATGT
* * *
81667732 GATAAACGTGAA-AGTGTATATATGTG
1 GATGAATGTGAACA-TGCATATATGTG
81667758 GCGAAGCCGA
Statistics
Matches: 104, Mismatches: 14, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
46 3 0.03
47 101 0.97
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGGCAATGT
Found at i:81667664 original size:25 final size:25
Alignment explanation
Indices: 81667635--81667712 Score: 69
Period size: 25 Copynumber: 3.2 Consensus size: 25
81667625 TAATGGGCAA
81667635 TGTGATGAATGTGAACATGCATATG
1 TGTGATGAATGTGAACATGCATATG
* *
81667660 TGTGAT-AAGGCCG-A-ATGGCCA-A--
1 TGTGATGAATG-TGAACAT-G-CATATG
81667682 TGTGATGAATGTGAACATGCATATG
1 TGTGATGAATGTGAACATGCATATG
81667707 TGTGAT
1 TGTGAT
81667713 AAGGTAGAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 9 0.22
23 8 0.20
24 8 0.20
25 15 0.38
ACGTcount: A:0.31, C:0.10, G:0.29, T:0.29
Consensus pattern (25 bp):
TGTGATGAATGTGAACATGCATATG
Found at i:81681781 original size:34 final size:38
Alignment explanation
Indices: 81681741--81681834 Score: 135
Period size: 34 Copynumber: 2.6 Consensus size: 38
81681731 TGAAGATATC
81681741 GGCTAAGTCCCGAAGGCATTTGCT-GTG-T-T-ATCCG
1 GGCTAAGTCCCGAAGGCATTTGCTAGTGATATAATCCG
81681775 GGCTAAGTCCCGAAGGCATTTGCTAGTGATATAATCCG
1 GGCTAAGTCCCGAAGGCATTTGCTAGTGATATAATCCG
*
81681813 GGCTAAG-ACCGAAGAGCATTTG
1 GGCTAAGTCCCGAAG-GCATTTG
81681835 TTGCGAGTTG
Statistics
Matches: 54, Mismatches: 1, Indels: 6
0.89 0.02 0.10
Matches are distributed among these distances:
34 24 0.44
35 3 0.06
36 1 0.02
37 7 0.13
38 19 0.35
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (38 bp):
GGCTAAGTCCCGAAGGCATTTGCTAGTGATATAATCCG
Found at i:81683411 original size:41 final size:39
Alignment explanation
Indices: 81683301--81683429 Score: 206
Period size: 38 Copynumber: 3.3 Consensus size: 39
81683291 ATAAGGACTA
81683301 CCGAAGAGCATTCGTGCTGGTGTTATGTCCGGGCTAAGT
1 CCGAAGAGCATTCGTGCTGGTGTTATGTCCGGGCTAAGT
81683340 CCG-AGAGCATTCGTGCTGGTGTTATGTCCGGGCTAAGT
1 CCGAAGAGCATTCGTGCTGGTGTTATGTCCGGGCTAAGT
* *
81683378 CCGAAGAGCATTCTCGTGCTGGTGTTATATCCGGGCTAGGT
1 CCGAAGAGCA-T-TCGTGCTGGTGTTATGTCCGGGCTAAGT
81683419 CCCGAAGAGCA
1 -CCGAAGAGCA
81683430 ATCATCTGGT
Statistics
Matches: 84, Mismatches: 2, Indels: 5
0.92 0.02 0.05
Matches are distributed among these distances:
38 38 0.45
39 9 0.11
40 1 0.01
41 26 0.31
42 10 0.12
ACGTcount: A:0.19, C:0.22, G:0.33, T:0.26
Consensus pattern (39 bp):
CCGAAGAGCATTCGTGCTGGTGTTATGTCCGGGCTAAGT
Found at i:81683451 original size:79 final size:77
Alignment explanation
Indices: 81683301--81683451 Score: 189
Period size: 79 Copynumber: 1.9 Consensus size: 77
81683291 ATAAGGACTA
* * * * *
81683301 CCGAAGAGCATTCGTGCTGGTGTTATGTCCGGGCTAAGTCCGAGAGCATTCGTGCTGGTGTTATG
1 CCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCGAGAGCAATCATGCTGGTGGTATA
81683366 TCCGGGCTAAGT
66 TCCGGGCTAAGT
*
81683378 CCGAAGAGCATTCTCGTGCTGGTGTTATATCCGGGCTAGGTCCCGAAGAGCAATCAT-CTGGTGG
1 CCGAAGAGCA-T-TCGTGCTGGTGTTATATCCGGGCTAAGT-CCG-AGAGCAATCATGCTGGTGG
*
81683442 TGTAT-CGGGC
62 TATATCCGGGC
81683452 CCTTCGTGCC
Statistics
Matches: 63, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
77 10 0.16
78 1 0.02
79 31 0.49
80 12 0.19
81 9 0.14
ACGTcount: A:0.18, C:0.22, G:0.33, T:0.27
Consensus pattern (77 bp):
CCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCGAGAGCAATCATGCTGGTGGTATA
TCCGGGCTAAGT
Found at i:81687366 original size:47 final size:47
Alignment explanation
Indices: 81687312--81687478 Score: 185
Period size: 47 Copynumber: 3.6 Consensus size: 47
81687302 GATTTTATGA
** * * *
81687312 GATGAATGTGAATGTGTATATATGAGATAAGGCCTAATGGGCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGGCAATGT
* *
81687359 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGGCAATGT
* **
81687406 GATGAATGTGAACATGCATATGTGTGATAAGGTAGAAT-GGCTAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGGC-AATGT
* * *
81687453 GATAAACGTGAA-AGTGTATATATGTG
1 GATGAATGTGAACA-TGCATATATGTG
81687479 GCGAAGCCGA
Statistics
Matches: 104, Mismatches: 14, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
46 3 0.03
47 101 0.97
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGGCAATGT
Found at i:81687385 original size:25 final size:25
Alignment explanation
Indices: 81687356--81687433 Score: 69
Period size: 25 Copynumber: 3.2 Consensus size: 25
81687346 TAATGGGCAA
81687356 TGTGATGAATGTGAACATGCATATG
1 TGTGATGAATGTGAACATGCATATG
* *
81687381 TGTGAT-AAGGCCG-A-ATGGCCA-A--
1 TGTGATGAATG-TGAACAT-G-CATATG
81687403 TGTGATGAATGTGAACATGCATATG
1 TGTGATGAATGTGAACATGCATATG
81687428 TGTGAT
1 TGTGAT
81687434 AAGGTAGAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 9 0.22
23 8 0.20
24 8 0.20
25 15 0.38
ACGTcount: A:0.31, C:0.10, G:0.29, T:0.29
Consensus pattern (25 bp):
TGTGATGAATGTGAACATGCATATG
Found at i:81701408 original size:143 final size:141
Alignment explanation
Indices: 81701150--81701483 Score: 562
Period size: 143 Copynumber: 2.4 Consensus size: 141
81701140 TGTACAAGAT
81701150 TGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATGTGATAAGGCC
1 TGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATGTGATAAGGCC
*
81701215 GAATGGCCAACGTGATGAATGTGAAAGTGTATGTATGTGATAAGGGCGAATGGCCAATGTGATGA
66 GAATGGCCAACGTGATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGTGATGA
*
81701280 ATGTGAAGGTGTA
131 ATGTGAA--AGTA
81701293 TGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATGTGATAAGGCC
1 TGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATGTGATAAGGCC
* *
81701358 GAATGGCCAATGTGATGAATGTGAAGGTGTATGTATGTGATAAGGCCGAATGGCCAATGTGATGA
66 GAATGGCCAACGTGATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGTGATGA
81701423 ATGTGAAAGTA
131 ATGTGAAAGTA
* * * *
81701434 TATATATATGATAAGGCCGAATGGTCAATGTGATGGAA-GTGGAAGTGTAT
1 TGTATATGTGATAAGGCCGAATGGCCAATGTGAT-GAATGTGAAAGTGTAT
81701484 AACTGTGATA
Statistics
Matches: 182, Mismatches: 8, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
141 45 0.25
142 3 0.02
143 134 0.74
ACGTcount: A:0.32, C:0.08, G:0.32, T:0.28
Consensus pattern (141 bp):
TGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATGTGATAAGGCC
GAATGGCCAACGTGATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGTGATGA
ATGTGAAAGTA
Found at i:81701495 original size:47 final size:47
Alignment explanation
Indices: 81701154--81701483 Score: 545
Period size: 47 Copynumber: 7.0 Consensus size: 47
81701144 CAAGATTGTA
81701154 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATG
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATG
*
81701201 TATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATG
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATG
* *
81701248 TATGTGATAAGGGCGAATGGCCAATGTGATGAATGTGAAGGTGTATG
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATG
81701295 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATG
1 --TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATG
*
81701344 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAGGTGTATG
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATG
* *
81701391 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATG
* * *
81701438 TATATGATAAGGCCGAATGGTCAATGTGATGGAA-GTGGAAGTGTAT
1 TATGTGATAAGGCCGAATGGCCAATGTGAT-GAATGTGAAAGTGTAT
81701484 AACTGTGATA
Statistics
Matches: 266, Mismatches: 14, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
47 218 0.82
48 3 0.01
49 45 0.17
ACGTcount: A:0.32, C:0.08, G:0.32, T:0.28
Consensus pattern (47 bp):
TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATG
Found at i:81703537 original size:40 final size:40
Alignment explanation
Indices: 81703479--81703792 Score: 470
Period size: 40 Copynumber: 7.8 Consensus size: 40
81703469 TTCAGTATGT
81703479 TATATCCGGGC-AAGGTCCCGAAGAGCATTCGTGCTGGTGA
1 TATATCCGGGCTAA-GTCCCGAAGAGCATTCGTGCTGGTGA
*
81703519 TGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGA
* * *
81703559 TGTATCCGGGCTAAGTCTCGAAGAGCATTCATGCTGGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGA
81703599 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT-A
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGA
* *
81703638 TTACATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 -TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGA
* *
81703679 TACATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGA
* * *
81703719 TACATCAGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGA
* * *
81703759 TACATCCGGGCTAAGTCCTGAAGGGCATTCGTGC
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGC
81703793 CGATGATGTG
Statistics
Matches: 259, Mismatches: 12, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
39 1 0.00
40 256 0.99
41 2 0.01
ACGTcount: A:0.21, C:0.23, G:0.30, T:0.25
Consensus pattern (40 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGA
Found at i:81704003 original size:25 final size:25
Alignment explanation
Indices: 81703961--81704015 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
81703951 TGTGTAATAA
* *
81703961 CGAATGAATATAGGCACTATGTGTG
1 CGAATGAATATAGACACTATGTATG
*
81703986 CGAATGAAT-TGAGACACTGTGTATG
1 CGAATGAATAT-AGACACTATGTATG
81704011 CGAAT
1 CGAAT
81704016 TCTTTAACCG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
24 1 0.04
25 25 0.96
ACGTcount: A:0.33, C:0.13, G:0.27, T:0.27
Consensus pattern (25 bp):
CGAATGAATATAGACACTATGTATG
Found at i:81704040 original size:28 final size:28
Alignment explanation
Indices: 81704000--81704153 Score: 96
Period size: 28 Copynumber: 5.5 Consensus size: 28
81703990 TGAATTGAGA
* *
81704000 CACTGTGTATGCGAATTCTTTAACCGGG
1 CACTATGTGTGCGAATTCTTTAACCGGG
** * ** *
81704028 CACTATGTGTGCGAGA-TCAGTCAGTGGA
1 CACTATGTGTGCGA-ATTCTTTAACCGGG
* *
81704056 CACTGTGTGTGCGAATTCTTTAACCGAG
1 CACTATGTGTGCGAATTCTTTAACCGGG
* ** * ** *
81704084 TACTATGTGTGCGAGA-TCGGTCAGTGGA
1 CACTATGTGTGCGA-ATTCTTTAACCGGG
* * *
81704112 CACTGTGTGTGTGAATTCTTTAACCGAG
1 CACTATGTGTGCGAATTCTTTAACCGGG
81704140 CACTATGTGTGCGA
1 CACTATGTGTGCGA
81704154 GATCGGTCAG
Statistics
Matches: 85, Mismatches: 37, Indels: 8
0.65 0.28 0.06
Matches are distributed among these distances:
27 2 0.02
28 81 0.95
29 2 0.02
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.31
Consensus pattern (28 bp):
CACTATGTGTGCGAATTCTTTAACCGGG
Found at i:81704070 original size:56 final size:56
Alignment explanation
Indices: 81703998--81704184 Score: 313
Period size: 56 Copynumber: 3.3 Consensus size: 56
81703988 AATGAATTGA
* * *
81703998 GACACTGTGTATGCGAATTCTTTAACCGGGCACTATGTGTGCGAGATCAGTCAGTG
1 GACACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTCAGTG
*
81704054 GACACTGTGTGTGCGAATTCTTTAACCGAGTACTATGTGTGCGAGATCGGTCAGTG
1 GACACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTCAGTG
*
81704110 GACACTGTGTGTGTGAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTCAGT-
1 GACACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTCAGTG
81704165 GAGCACTGTGTGTGCGAATT
1 GA-CACTGTGTGTGCGAATT
81704185 TCGTTTCATG
Statistics
Matches: 123, Mismatches: 7, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
55 2 0.02
56 121 0.98
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.30
Consensus pattern (56 bp):
GACACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTCAGTG
Found at i:81704168 original size:28 final size:28
Alignment explanation
Indices: 81704027--81704181 Score: 102
Period size: 28 Copynumber: 5.5 Consensus size: 28
81704017 CTTTAACCGG
*
81704027 GCACTATGTGTGCGAGATCAGTCAGTG-
1 GCACTATGTGTGCGAGATCGGTCAGTGA
* ** * **
81704054 GACACTGTGTGTGCGA-ATTCTTTAACCGA
1 G-CACTATGTGTGCGAGA-TCGGTCAGTGA
*
81704083 GTACTATGTGTGCGAGATCGGTCAGTG-
1 GCACTATGTGTGCGAGATCGGTCAGTGA
* * ** * **
81704110 GACACTGTGTGTGTGA-ATTCTTTAACCGA
1 G-CACTATGTGTGCGAGA-TCGGTCAGTGA
81704139 GCACTATGTGTGCGAGATCGGTCAGTGA
1 GCACTATGTGTGCGAGATCGGTCAGTGA
*
81704167 GCACTGTGTGTGCGA
1 GCACTATGTGTGCGA
81704182 ATTTCGTTTC
Statistics
Matches: 91, Mismatches: 29, Indels: 15
0.67 0.21 0.11
Matches are distributed among these distances:
27 4 0.04
28 83 0.91
29 4 0.04
ACGTcount: A:0.21, C:0.18, G:0.32, T:0.29
Consensus pattern (28 bp):
GCACTATGTGTGCGAGATCGGTCAGTGA
Found at i:81707594 original size:47 final size:47
Alignment explanation
Indices: 81707541--81707964 Score: 674
Period size: 47 Copynumber: 9.0 Consensus size: 47
81707531 AAGATATGTA
81707541 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATG
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATG
*
81707588 TATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATG
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATG
* *
81707635 TATGTGATAAGGCCGAATGGCCAATGTGATGAATTTGAAGGTGTATG
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATG
81707682 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATG
1 --TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATG
* *
81707731 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAGGTGTATT
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATG
*
81707778 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAGGTGTATG
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATG
* *
81707825 TATATGTGATAAGGCCGAATGGACAATGTGATGAATGTGAAGGTGTATG
1 --TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATG
*
81707874 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA--GTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATG
* * *
81707919 TATATGATAAGGCCGAATGGTCAATGTGATGGAA-GTGGAAGTGTAT
1 TATGTGATAAGGCCGAATGGCCAATGTGAT-GAATGTGAAAGTGTAT
81707965 AACTGTGATA
Statistics
Matches: 354, Mismatches: 16, Indels: 14
0.92 0.04 0.04
Matches are distributed among these distances:
45 37 0.10
46 3 0.01
47 223 0.63
49 91 0.26
ACGTcount: A:0.32, C:0.08, G:0.32, T:0.28
Consensus pattern (47 bp):
TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATG
Found at i:81707714 original size:96 final size:94
Alignment explanation
Indices: 81707541--81707949 Score: 687
Period size: 96 Copynumber: 4.3 Consensus size: 94
81707531 AAGATATGTA
*
81707541 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAAT
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAGGTGTATGTATGTGATAAGGCCGAAT
*
81707606 GGCCAACGTGATGAATGTGAAAGTGTATG
66 GGCCAATGTGATGAATGTGAAAGTGTATG
*
81707635 TATGTGATAAGGCCGAATGGCCAATGTGATGAATTTGAAGGTGTATGTATATGTGATAAGGCCGA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAGGTGTATG--TATGTGATAAGGCCGA
81707700 ATGGCCAATGTGATGAATGTGAAAGTGTATG
64 ATGGCCAATGTGATGAATGTGAAAGTGTATG
*
81707731 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAGGTGTATTTATGTGATAAGGCCGAAT
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAGGTGTATGTATGTGATAAGGCCGAAT
*
81707796 GGCCAATGTGATGAATGTGAAGGTGTATG
66 GGCCAATGTGATGAATGTGAAAGTGTATG
*
81707825 TATATGTGATAAGGCCGAATGGACAATGTGATGAATGTGAAGGTGTATGTATGTGATAAGGCCGA
1 --TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAGGTGTATGTATGTGATAAGGCCGA
*
81707890 ATGGCCAATGTGATGAATGTGAAA--GTATA
64 ATGGCCAATGTGATGAATGTGAAAGTGTATG
* *
81707919 TATATGATAAGGCCGAATGGTCAATGTGATG
1 TATGTGATAAGGCCGAATGGCCAATGTGATG
81707950 GAAGTGGAAG
Statistics
Matches: 299, Mismatches: 12, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
92 29 0.10
94 95 0.32
96 175 0.59
ACGTcount: A:0.32, C:0.09, G:0.32, T:0.28
Consensus pattern (94 bp):
TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAGGTGTATGTATGTGATAAGGCCGAAT
GGCCAATGTGATGAATGTGAAAGTGTATG
Found at i:81707793 original size:143 final size:142
Alignment explanation
Indices: 81707535--81707949 Score: 724
Period size: 143 Copynumber: 2.9 Consensus size: 142
81707525 ATGTACAAGA
81707535 TATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATGTGATAAGG
1 TATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATGTGATAAGG
* *
81707600 CCGAATGGCCAACGTGATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGTGAT
66 CCGAATGGCCAATGTGATGAATGTG-AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGAT
*
81707665 GAATTTGAAGGTG
130 GAATGTGAAGGTG
81707678 TATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATGTGATAAGG
1 TATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATGTGATAAGG
*
81707743 CCGAATGGCCAATGTGATGAATGTGAAGGTGTATTTATGTGATAAGGCCGAATGGCCAATGTGAT
66 CCGAATGGCCAATGTGATGAATGTGAA-GTGTATATATGTGATAAGGCCGAATGGCCAATGTGAT
81707808 GAATGTGAAGGTG
130 GAATGTGAAGGTG
* *
81707821 TATGTATATGTGATAAGGCCGAATGGACAATGTGATGAATGTGAAGGTGTATGTATGTGATAAGG
1 TATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATGTGATAAGG
* * *
81707886 CCGAATGGCCAATGTGATGAATGTGAA-AGTATATATATGATAAGGCCGAATGGTCAATGTGATG
66 CCGAATGGCCAATGTGATGAATGTGAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
81707950 GAAGTGGAAG
Statistics
Matches: 262, Mismatches: 9, Indels: 4
0.95 0.03 0.01
Matches are distributed among these distances:
141 33 0.13
142 2 0.01
143 227 0.87
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.28
Consensus pattern (142 bp):
TATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATGTGATAAGG
CCGAATGGCCAATGTGATGAATGTGAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
AATGTGAAGGTG
Found at i:81707948 original size:22 final size:22
Alignment explanation
Indices: 81707875--81707948 Score: 53
Period size: 22 Copynumber: 3.3 Consensus size: 22
81707865 AGGTGTATGT
*
81707875 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGTCA
* * * *
81707897 ATGTGATGAATG-TGAA-AGTATA
1 ATGTGAT-AAGGCCGAATGGT-CA
*
81707919 TATATGATAAGGCCGAATGGTCA
1 -ATGTGATAAGGCCGAATGGTCA
81707942 ATGTGAT
1 ATGTGAT
81707949 GGAAGTGGAA
Statistics
Matches: 36, Mismatches: 11, Indels: 10
0.63 0.19 0.18
Matches are distributed among these distances:
21 1 0.03
22 20 0.56
23 13 0.36
24 2 0.06
ACGTcount: A:0.35, C:0.09, G:0.28, T:0.27
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGTCA
Found at i:81717768 original size:47 final size:47
Alignment explanation
Indices: 81717699--81717792 Score: 170
Period size: 47 Copynumber: 2.0 Consensus size: 47
81717689 TATGTTGATG
*
81717699 ACATAGTGATGATAGGAGATGATGAGGAAGAAATGACTTGAATAAAA
1 ACATAGTGATGATAGGAGATGATAAGGAAGAAATGACTTGAATAAAA
*
81717746 ACATAGTGATGATAGGAGATGATAAGGAAGAAATGGCTTGAATAAAA
1 ACATAGTGATGATAGGAGATGATAAGGAAGAAATGACTTGAATAAAA
81717793 CAATGTTTGG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.47, C:0.04, G:0.28, T:0.21
Consensus pattern (47 bp):
ACATAGTGATGATAGGAGATGATAAGGAAGAAATGACTTGAATAAAA
Found at i:81722810 original size:24 final size:24
Alignment explanation
Indices: 81722783--81722832 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
81722773 GGAGCATCGA
81722783 ATTCACCAAATCTAAGGAAAAATC
1 ATTCACCAAATCTAAGGAAAAATC
81722807 ATTCACCAAATCTAAGGAAAAATC
1 ATTCACCAAATCTAAGGAAAAATC
81722831 AT
1 AT
81722833 CCATAAAATG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.50, C:0.20, G:0.08, T:0.22
Consensus pattern (24 bp):
ATTCACCAAATCTAAGGAAAAATC
Found at i:81722841 original size:24 final size:24
Alignment explanation
Indices: 81722790--81722841 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
81722780 CGAATTCACC
* *
81722790 AAATCTAAGGAAAAATCATTCACC
1 AAATCTAAGGAAAAATCATCCACA
*
81722814 AAATCTAAGGAAAAATCATCCATA
1 AAATCTAAGGAAAAATCATCCACA
81722838 AAAT
1 AAAT
81722842 GTGCTAAGCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.54, C:0.17, G:0.08, T:0.21
Consensus pattern (24 bp):
AAATCTAAGGAAAAATCATCCACA
Found at i:81731820 original size:12 final size:13
Alignment explanation
Indices: 81731779--81731902 Score: 69
Period size: 14 Copynumber: 9.2 Consensus size: 13
81731769 TACAAATTTT
81731779 TAAAATTATACATAA
1 TAAAATTAT--ATAA
*
81731794 TAATAAATA-ATAA
1 TAA-AATTATATAA
81731807 T-AAATTATATAA
1 TAAAATTATATAA
* * *
81731819 T-ATATAATAAAA
1 TAAAATTATATAA
*
81731831 TAAAAATAATATAA
1 T-AAAATTATATAA
81731845 TGAATAATATATATAA
1 T-AA-AAT-TATATAA
81731861 TAAAATGTATA-AA
1 TAAAAT-TATATAA
81731874 TCAAAA-TATATAA
1 T-AAAATTATATAA
*
81731887 TAAAATGTAAATAA
1 TAAAAT-TATATAA
81731901 TA
1 TA
81731903 TAATAAATAA
Statistics
Matches: 88, Mismatches: 11, Indels: 21
0.73 0.09 0.17
Matches are distributed among these distances:
11 4 0.05
12 23 0.26
13 11 0.12
14 31 0.35
15 8 0.09
16 11 0.12
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (13 bp):
TAAAATTATATAA
Found at i:81731825 original size:26 final size:26
Alignment explanation
Indices: 81731781--81731979 Score: 92
Period size: 26 Copynumber: 7.4 Consensus size: 26
81731771 CAAATTTTTA
81731781 AAATTATACATAATA-ATAAATAATAAT
1 AAATTAT--ATAATATATAAATAATAAT
*
81731808 AAATTATATAATATATAATAAAATAA-
1 AAATTATATAATATATAA-ATAATAAT
*
81731834 AAATAATATAATGA-ATAATATATATAAT
1 AAATTATATAAT-ATATAA-ATA-ATAAT
* *
81731862 AAAATGTATAA-ATCA-AAATATATAAT
1 AAATTATATAATAT-ATAAATA-ATAAT
* *
81731888 AAAATGTAAATAATATAATAAATAATACAC
1 -AAAT-TATATAATAT-ATAAATAATA-AT
* * *
81731918 AAA-TA-AAAATAAAAATAATATATAAT
1 AAATTATATAATATATA-AATA-ATAAT
* * *
81731944 AACTTTTTTACATATATAAAT-A-AAT
1 AAATTATATA-ATATATAAATAATAAT
81731969 AAATTATATAA
1 AAATTATATAA
81731980 AAATTTAAAA
Statistics
Matches: 131, Mismatches: 24, Indels: 37
0.68 0.12 0.19
Matches are distributed among these distances:
24 1 0.01
25 18 0.14
26 45 0.34
27 29 0.22
28 18 0.14
29 14 0.11
30 6 0.05
ACGTcount: A:0.62, C:0.03, G:0.02, T:0.33
Consensus pattern (26 bp):
AAATTATATAATATATAAATAATAAT
Found at i:81731864 original size:35 final size:34
Alignment explanation
Indices: 81731785--81731944 Score: 101
Period size: 33 Copynumber: 4.9 Consensus size: 34
81731775 TTTTTAAAAT
*
81731785 TATACATAATAATAAATAATAATAAATTATATAATA
1 TATA-ATAA-AATAAATAATAATAAATAATATAATA
*
81731821 TATAATAAAATAAA-AATAATATAATGA-ATAATA
1 TATAATAAAATAAATAATAATA-AATAATATAATA
* * *
81731854 TAT-ATAATA-AAAT-GT-ATAAATCA-A-AATA
1 TATAATAAAATAAATAATAATAAATAATATAATA
81731882 TATAATAAAATGTAAATAAT-AT-AATAA-ATAATA
1 TATAATAAAA--TAAATAATAATAAATAATATAATA
* * *
81731915 CACAAATAAAAATAAA-AATAATATATAATA
1 TA-TAAT-AAAATAAATAATAATAAATAATA
81731945 ACTTTTTTAC
Statistics
Matches: 101, Mismatches: 10, Indels: 27
0.73 0.07 0.20
Matches are distributed among these distances:
28 7 0.07
29 10 0.10
30 3 0.03
31 4 0.04
32 17 0.17
33 30 0.30
34 17 0.17
35 9 0.09
36 4 0.04
ACGTcount: A:0.64, C:0.03, G:0.02, T:0.31
Consensus pattern (34 bp):
TATAATAAAATAAATAATAATAAATAATATAATA
Found at i:81731909 original size:12 final size:12
Alignment explanation
Indices: 81731793--81731914 Score: 74
Period size: 12 Copynumber: 10.1 Consensus size: 12
81731783 ATTATACATA
81731793 ATAATAAAT-A-
1 ATAATAAATAAT
*
81731803 ATAATAAATTAT
1 ATAATAAATAAT
*
81731815 ATAATATATAAT
1 ATAATAAATAAT
*
81731827 AAAATAAAAATAAT
1 ATAAT--AAATAAT
*
81731841 ATAATGAATAAT
1 ATAATAAATAAT
*
81731853 AT-ATATAATAAA
1 ATAATA-AATAAT
* *
81731865 ATGTATAAATCAAA
1 AT-AATAAAT-AAT
*
81731879 AT-ATATAATAAA
1 ATAATA-AATAAT
*
81731891 AT-GTAAATAAT
1 ATAATAAATAAT
81731902 ATAATAAATAAT
1 ATAATAAATAAT
81731914 A
1 A
81731915 CACAAATAAA
Statistics
Matches: 91, Mismatches: 11, Indels: 18
0.76 0.09 0.15
Matches are distributed among these distances:
10 9 0.10
11 10 0.11
12 48 0.53
13 6 0.07
14 18 0.20
ACGTcount: A:0.64, C:0.01, G:0.02, T:0.33
Consensus pattern (12 bp):
ATAATAAATAAT
Found at i:81731945 original size:45 final size:44
Alignment explanation
Indices: 81731790--81731942 Score: 119
Period size: 47 Copynumber: 3.2 Consensus size: 44
81731780 AAAATTATAC
* *
81731790 ATAATA-ATAAATAATAATAAATTATATAATATATAATAAAATAAAA
1 ATAATATATAAATAAT-AT-AA-TAAATAATATAAAATAAAATAAAA
* * * *
81731836 ATAATATAATGAATAATATATATAATAAAATGTATAAATCAAAATATATA
1 ATAATAT-ATAAATAATATA-ATAA-ATAATATA-AAAT-AAAATA-AAA
* * *
81731886 ATAAAATGTAAATAATATAATAAATAATACACAAATAAAAATAAAA
1 ATAATATATAAATAATATAATAAATAATATA-AAAT-AAAATAAAA
81731932 ATAATATATAA
1 ATAATATATAA
81731943 TAACTTTTTT
Statistics
Matches: 83, Mismatches: 17, Indels: 14
0.73 0.15 0.12
Matches are distributed among these distances:
46 20 0.24
47 24 0.29
48 15 0.18
49 16 0.19
50 8 0.10
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (44 bp):
ATAATATATAAATAATATAATAAATAATATAAAATAAAATAAAA
Found at i:81733446 original size:44 final size:44
Alignment explanation
Indices: 81733367--81734064 Score: 414
Period size: 44 Copynumber: 16.0 Consensus size: 44
81733357 ATCATGCTGA
* * * *
81733367 TATCTTTGATTTGCACCCCGTCTAATACAGAGACGCCAAATCTGC
1 TATCTTCGATCTGCTCCCCGTC-AATACAGAGATGCCAAATCTGC
* *
81733412 TATCCTCGATCTGCTCCCCGTCAATACAGAGACGCCAAATCTGC
1 TATCTTCGATCTGCTCCCCGTCAATACAGAGATGCCAAATCTGC
* * ** * *
81733456 TATCTTTGATCTGCTCTCTATCAATACAGAGATGCCAGATGTGC
1 TATCTTCGATCTGCTCCCCGTCAATACAGAGATGCCAAATCTGC
* * * *
81733500 TTTTTTTGATCTGCTCTCCGTCAATACAGAGATGCCAAATCTGC
1 TATCTTCGATCTGCTCCCCGTCAATACAGAGATGCCAAATCTGC
**
81733544 T-TCTTCGATCTGCTCCCCGTCTAATACAGAGACACCAAATCTGC
1 TATCTTCGATCTGCTCCCCGTC-AATACAGAGATGCCAAATCTGC
* * * *
81733588 TATCTTCGATCTGCTCTCTGTCAATACAGAGATGCTAAATGTGC
1 TATCTTCGATCTGCTCCCCGTCAATACAGAGATGCCAAATCTGC
* * * * * * *
81733632 TTTTTTCGATCTACTCTCCGTCAATATAGAGTTTCCAAATCTGC
1 TATCTTCGATCTGCTCCCCGTCAATACAGAGATGCCAAATCTGC
81733676 T-TCTTCGATCTGCTCCCCG----T-C----A--CCAAATCTG-
1 TATCTTCGATCTGCTCCCCGTCAATACAGAGATGCCAAATCTGC
* ** * *** * * *
81733707 TCATTTTTTATCTACTTCGATGT-AACCACACGA-ATGTCAGATCTGC
1 T-ATCTTCGATCTGC-TCCCCGTCAA-TACA-GAGATGCCAAATCTGC
* * * **
81733753 TATCTTTGATCTGCTCCCCGTCTAATATAGAGACGAAAAATCTG-
1 TATCTTCGATCTGCTCCCCGTC-AATACAGAGATGCCAAATCTGC
** * * * * * *
81733797 TCATCTTCGATCTGCT--TTGATGCAAACACACAAATGTCAGATCTAC
1 T-ATCTTCGATCTGCTCCCCG-T-C-AATACAGAGATGCCAAATCTGC
81733843 TATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTG-
1 TATCTTCGATCTGCTCCCCGTC-AATACAGAGATGCCAAATCTGC
*** * * * * *
81733887 TCATCTTCGATCTGCTTCGATGTAAACACACGA-ATGTCAGATCTAC
1 T-ATCTTCGATCTGC-TCCCCGTCAATACA-GAGATGCCAAATCTGC
* * * * *
81733933 TATCTTTGATCTGCTCTCTGTCAATACAGAGATGCCAGATGTGC
1 TATCTTCGATCTGCTCCCCGTCAATACAGAGATGCCAAATCTGC
* * * * * *
81733977 TTTCTTCGATCTGCTCTCCGTCAATACAGAGACGCTAAATTTTC
1 TATCTTCGATCTGCTCCCCGTCAATACAGAGATGCCAAATCTGC
* * * * **
81734021 T-TTTTTGGTCTGCTCCCTGTCAATACAGAGACACCAAATCTGC
1 TATCTTCGATCTGCTCCCCGTCAATACAGAGATGCCAAATCTGC
81734064 T
1 T
81734065 TTCTAAAAGA
Statistics
Matches: 502, Mismatches: 120, Indels: 64
0.73 0.17 0.09
Matches are distributed among these distances:
31 1 0.00
32 9 0.02
33 8 0.02
34 3 0.01
39 2 0.00
43 70 0.14
44 238 0.47
45 158 0.31
46 12 0.02
47 1 0.00
ACGTcount: A:0.25, C:0.27, G:0.15, T:0.33
Consensus pattern (44 bp):
TATCTTCGATCTGCTCCCCGTCAATACAGAGATGCCAAATCTGC
Found at i:81733630 original size:132 final size:131
Alignment explanation
Indices: 81733384--81733697 Score: 493
Period size: 132 Copynumber: 2.4 Consensus size: 131
81733374 GATTTGCACC
* * *
81733384 CCGTCTAATACAGAGACGCCAAATCTGCTATCCTCGATCTGCTCCCCGTCAATACAGAGACGCCA
1 CCGTC-AATACAGAGATGCCAAATCTGCT-TCTTCGATCTGCTCCCCGTCAATACAGAGACACCA
* * * *
81733449 AATCTGCTATCTTTGATCTGCTCTCTATCAATACAGAGATGCCAGATGTGCTTTTTTTGATCTGC
64 AATCTGCTATCTTCGATCTGCTCTCTATCAATACAGAGATGCCAAATGTGCTTTTTTCGATCTAC
81733514 TCT
129 TCT
81733517 CCGTCAATACAGAGATGCCAAATCTGCTTCTTCGATCTGCTCCCCGTCTAATACAGAGACACCAA
1 CCGTCAATACAGAGATGCCAAATCTGCTTCTTCGATCTGCTCCCCGTC-AATACAGAGACACCAA
* *
81733582 ATCTGCTATCTTCGATCTGCTCTCTGTCAATACAGAGATGCTAAATGTGCTTTTTTCGATCTACT
65 ATCTGCTATCTTCGATCTGCTCTCTATCAATACAGAGATGCCAAATGTGCTTTTTTCGATCTACT
81733647 CT
130 CT
* * *
81733649 CCGTCAATATAGAGTTTCCAAATCTGCTTCTTCGATCTGCTCCCCGTCA
1 CCGTCAATACAGAGATGCCAAATCTGCTTCTTCGATCTGCTCCCCGTCA
81733698 CCAAATCTGT
Statistics
Matches: 168, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
131 20 0.12
132 143 0.85
133 5 0.03
ACGTcount: A:0.24, C:0.29, G:0.16, T:0.32
Consensus pattern (131 bp):
CCGTCAATACAGAGATGCCAAATCTGCTTCTTCGATCTGCTCCCCGTCAATACAGAGACACCAAA
TCTGCTATCTTCGATCTGCTCTCTATCAATACAGAGATGCCAAATGTGCTTTTTTCGATCTACTC
T
Found at i:81733848 original size:45 final size:45
Alignment explanation
Indices: 81733799--81733947 Score: 142
Period size: 45 Copynumber: 3.3 Consensus size: 45
81733789 AAAATCTGTC
*
81733799 ATCTTCGATCTGCTTTGATGCAAACACACAAATGTCAGATCTACT
1 ATCTTCGATCTGCTTCGATGCAAACACACAAATGTCAGATCTACT
* * * * * * * *
81733844 ATCTTCGATCTGCTCCCCG-T-CTAATACAGAGATGCCAAATCT-GT
1 ATCTTCGATCTGCT--TCGATGCAAACACACAAATGTCAGATCTACT
* *
81733888 CATCTTCGATCTGCTTCGATGTAAACACACGAATGTCAGATCTACT
1 -ATCTTCGATCTGCTTCGATGCAAACACACAAATGTCAGATCTACT
*
81733934 ATCTTTGATCTGCT
1 ATCTTCGATCTGCT
81733948 CTCTGTCAAT
Statistics
Matches: 78, Mismatches: 20, Indels: 12
0.71 0.18 0.11
Matches are distributed among these distances:
43 2 0.03
44 2 0.03
45 71 0.91
46 2 0.03
47 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.32
Consensus pattern (45 bp):
ATCTTCGATCTGCTTCGATGCAAACACACAAATGTCAGATCTACT
Found at i:81733854 original size:90 final size:90
Alignment explanation
Indices: 81733700--81733964 Score: 379
Period size: 90 Copynumber: 3.0 Consensus size: 90
81733690 CCCCGTCACC
* ** * * *
81733700 AAATCTGTCATTTTTTATCTACTTCGATGTAACCACACGAATGTCAGATCTGCTATCTTTGATCT
1 AAATCTGTCATCTTCGATCTGCTTCGATGTAAACACACGAATGTCAGATCTACTATCTTTGATCT
*
81733765 GCTCCCCGTCTAATATAGAGACGAA
66 GCTCCCCGTCTAATACAGAGACGAA
* * * *
81733790 AAATCTGTCATCTTCGATCTGCTTTGATGCAAACACACAAATGTCAGATCTACTATCTTCGATCT
1 AAATCTGTCATCTTCGATCTGCTTCGATGTAAACACACGAATGTCAGATCTACTATCTTTGATCT
* **
81733855 GCTCCCCGTCTAATACAGAGATGCC
66 GCTCCCCGTCTAATACAGAGACGAA
81733880 AAATCTGTCATCTTCGATCTGCTTCGATGTAAACACACGAATGTCAGATCTACTATCTTTGATCT
1 AAATCTGTCATCTTCGATCTGCTTCGATGTAAACACACGAATGTCAGATCTACTATCTTTGATCT
* *
81733945 GCTCTCTGTC-AATACAGAGA
66 GCTCCCCGTCTAATACAGAGA
81733965 TGCCAGATGT
Statistics
Matches: 155, Mismatches: 20, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
89 10 0.06
90 145 0.94
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.32
Consensus pattern (90 bp):
AAATCTGTCATCTTCGATCTGCTTCGATGTAAACACACGAATGTCAGATCTACTATCTTTGATCT
GCTCCCCGTCTAATACAGAGACGAA
Found at i:81734971 original size:54 final size:52
Alignment explanation
Indices: 81734889--81734992 Score: 145
Period size: 54 Copynumber: 2.0 Consensus size: 52
81734879 ACCCCTTTGA
* *
81734889 TCTCAAGGCACCCTTTGCGGGTTTTCACCTTGGCCTCTCCATTTTTTTTAGAAG
1 TCTCAAAGCACCCTTTGCGGGTTTTCACCTTGG-CT-TCCATTTTCTTTAGAAG
* * *
81734943 TCTCAAAGCGCCCTTTGTGGGTTTTCACCTTGGCTTCCCTTTTCTTTAGA
1 TCTCAAAGCACCCTTTGCGGGTTTTCACCTTGGCTTCCATTTTCTTTAGA
81734993 CAAAGTACCT
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
52 13 0.29
53 2 0.04
54 30 0.67
ACGTcount: A:0.13, C:0.28, G:0.18, T:0.40
Consensus pattern (52 bp):
TCTCAAAGCACCCTTTGCGGGTTTTCACCTTGGCTTCCATTTTCTTTAGAAG
Found at i:81742043 original size:16 final size:16
Alignment explanation
Indices: 81742022--81742056 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
81742012 TTCCAGATTT
81742022 TCTCTTTCTCTCACTC
1 TCTCTTTCTCTCACTC
*
81742038 TCTCTTTCTCTCTCTC
1 TCTCTTTCTCTCACTC
81742054 TCT
1 TCT
81742057 ATGTTAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.03, C:0.43, G:0.00, T:0.54
Consensus pattern (16 bp):
TCTCTTTCTCTCACTC
Found at i:81746136 original size:17 final size:15
Alignment explanation
Indices: 81746116--81746197 Score: 62
Period size: 17 Copynumber: 5.1 Consensus size: 15
81746106 CAAATTTTTA
81746116 AAATTATACATAATAAT
1 AAATTATA-ATAA-AAT
81746133 AAA-TATAATAAAAT
1 AAATTATAATAAAAT
81746147 ATAATATATAATAAAAT
1 A-AAT-TATAATAAAAT
*
81746164 AAAATA-ATATATAAAT
1 AAATTATA-ATA-AAAT
81746180 -AATATATAAATAAAAT
1 AAAT-TAT-AATAAAAT
81746196 AA
1 AA
81746198 TAATATAAAA
Statistics
Matches: 54, Mismatches: 2, Indels: 18
0.73 0.03 0.24
Matches are distributed among these distances:
14 5 0.09
15 13 0.24
16 16 0.30
17 19 0.35
18 1 0.02
ACGTcount: A:0.67, C:0.01, G:0.00, T:0.32
Consensus pattern (15 bp):
AAATTATAATAAAAT
Found at i:81746144 original size:27 final size:26
Alignment explanation
Indices: 81746114--81746205 Score: 84
Period size: 27 Copynumber: 3.4 Consensus size: 26
81746104 TACAAATTTT
81746114 TAAAATTATACATAATAATAAATATAA
1 TAAAATTATA-ATAATAATAAATATAA
81746141 TAAAA-TATAATATATAATAAA-ATAA
1 TAAAATTATAATA-ATAATAAATATAA
*
81746166 -AATAATATATAAATAATATATAAATAAAA
1 TAA-AAT-TAT-AATAATA-ATAAATATAA
81746195 TAATAA-TATAA
1 TAA-AATTATAA
81746206 AATGTAAATA
Statistics
Matches: 56, Mismatches: 1, Indels: 16
0.77 0.01 0.22
Matches are distributed among these distances:
24 2 0.04
25 9 0.16
26 12 0.21
27 13 0.23
28 12 0.21
29 3 0.05
30 5 0.09
ACGTcount: A:0.66, C:0.01, G:0.00, T:0.33
Consensus pattern (26 bp):
TAAAATTATAATAATAATAAATATAA
Found at i:81746151 original size:49 final size:49
Alignment explanation
Indices: 81746058--81746151 Score: 111
Period size: 48 Copynumber: 1.9 Consensus size: 49
81746048 ATTACATACT
* * *
81746058 AAATTTTTAATAATGATATATAAAAATACAATATTTAATAATAATTTAC
1 AAATTTTTAATAATGATACATAAAAATACAATATATAAAAATAATTTAC
* *
81746107 AAATTTTTAA-AATTATACATAATAATA-AATATAATAAAATATAAT
1 AAATTTTTAATAATGATACATAAAAATACAATAT-ATAAAA-ATAAT
81746152 ATATAATAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
47 5 0.13
48 18 0.47
49 15 0.39
ACGTcount: A:0.56, C:0.03, G:0.01, T:0.39
Consensus pattern (49 bp):
AAATTTTTAATAATGATACATAAAAATACAATATATAAAAATAATTTAC
Found at i:81746159 original size:22 final size:21
Alignment explanation
Indices: 81746125--81746205 Score: 85
Period size: 22 Copynumber: 3.7 Consensus size: 21
81746115 AAAATTATAC
81746125 ATAATAATAAATATAATAAAAT
1 ATAATAAT-AATATAATAAAAT
*
81746147 ATAATATATAATAAAATAAAAT
1 ATAATA-ATAATATAATAAAAT
81746169 AATATATAAATAATAT-AT-AAAT
1 -ATA-AT-AATAATATAATAAAAT
*
81746191 AAAATAATAATATAA
1 ATAATAATAATATAA
81746206 AATGTAAATA
Statistics
Matches: 51, Mismatches: 3, Indels: 12
0.77 0.05 0.18
Matches are distributed among these distances:
19 8 0.16
20 3 0.06
21 2 0.04
22 22 0.43
23 7 0.14
24 8 0.16
25 1 0.02
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (21 bp):
ATAATAATAATATAATAAAAT
Found at i:81746205 original size:5 final size:5
Alignment explanation
Indices: 81746128--81746227 Score: 59
Period size: 5 Copynumber: 20.2 Consensus size: 5
81746118 ATTATACATA
* * * *
81746128 ATAAT A-AAT ATAAT AAAAT ATAAT AT-AT AATAAA ATAAA ATAAT ATATAA
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT -ATAAT ATAAT ATAAT ATA-AT
* *
81746178 ATAAT AT-AT A-AAT AAAAT AATAAT ATAAAAT GTAA- ATAAT ATAAT
1 ATAAT ATAAT ATAAT ATAAT -ATAAT AT--AAT ATAAT ATAAT ATAAT
81746223 A-AAT A
1 ATAAT A
81746228 ATACACAAAT
Statistics
Matches: 76, Mismatches: 9, Indels: 21
0.72 0.08 0.20
Matches are distributed among these distances:
4 19 0.25
5 44 0.58
6 9 0.12
7 4 0.05
ACGTcount: A:0.67, C:0.00, G:0.01, T:0.32
Consensus pattern (5 bp):
ATAAT
Found at i:81746218 original size:22 final size:21
Alignment explanation
Indices: 81746125--81746261 Score: 83
Period size: 21 Copynumber: 6.5 Consensus size: 21
81746115 AAAATTATAC
*
81746125 ATAATAATAA-ATATAATAAA
1 ATAATAATAATATAAAATAAA
81746145 AT-ATAATATATAATAAAATAAA
1 ATAATAATA-AT-ATAAAATAAA
81746167 ATAATATATAA-ATAATATATAAA
1 ATAATA-ATAATATAA-A-ATAAA
* *
81746190 TAAAATAATAATATAAAATGTAA
1 -ATAATAATAATATAAAAT-AAA
*
81746213 ATAAT-ATAATA-AATAATACAC
1 ATAATAATAATATAA-AATA-AA
* *
81746234 A-AATAAAAATA-AAAATAAT
1 ATAATAATAATATAAAATAAA
81746253 AT-ATAATAA
1 ATAATAATAA
81746262 CTTTTTTACA
Statistics
Matches: 94, Mismatches: 9, Indels: 29
0.71 0.07 0.22
Matches are distributed among these distances:
19 14 0.15
20 12 0.13
21 22 0.23
22 18 0.19
23 16 0.17
24 12 0.13
ACGTcount: A:0.68, C:0.01, G:0.01, T:0.30
Consensus pattern (21 bp):
ATAATAATAATATAAAATAAA
Found at i:81746218 original size:27 final size:25
Alignment explanation
Indices: 81746137--81746258 Score: 94
Period size: 27 Copynumber: 4.8 Consensus size: 25
81746127 AATAATAAAT
*
81746137 ATAATAAAAT-ATAATATATAAT-A
1 ATAATAAAATAATAATATAAAATAA
*
81746160 A-AATAAAATAAT-ATATAAATAATAT
1 ATAATAAAATAATAATAT-AA-AATAA
81746185 ATAAATAAAATAATAATATAAAATGTAA
1 AT-AATAAAATAATAATATAAAA--TAA
* *
81746213 ATAATATAATAAATAATACACAAATAA
1 ATAATAAAAT-AATAATATA-AAATAA
81746240 A-AATAAAAATAAT-ATATAA
1 ATAAT-AAAATAATAATATAA
81746259 TAACTTTTTT
Statistics
Matches: 80, Mismatches: 7, Indels: 23
0.73 0.06 0.21
Matches are distributed among these distances:
22 12 0.15
23 4 0.05
24 4 0.05
25 5 0.06
26 8 0.10
27 28 0.35
28 16 0.20
29 3 0.04
ACGTcount: A:0.68, C:0.02, G:0.01, T:0.30
Consensus pattern (25 bp):
ATAATAAAATAATAATATAAAATAA
Found at i:81746243 original size:35 final size:36
Alignment explanation
Indices: 81746125--81746255 Score: 119
Period size: 35 Copynumber: 3.7 Consensus size: 36
81746115 AAAATTATAC
* *
81746125 ATAATA-ATAAATATAATAAAATATAATATATAATAA-A
1 ATAATATA-AAATATAA-ATAATATAATAAATAA-AACA
* * *
81746162 ATAAAATAATATATAAATAATAT-ATAAATAAAATA
1 ATAATATAAAATATAAATAATATAATAAATAAAACA
* *
81746197 ATAATATAAAATGTAAATAATATAATAAATAATACA
1 ATAATATAAAATATAAATAATATAATAAATAAAACA
*
81746233 CA-AATA-AAAATAAAAATAATATA
1 -ATAATATAAAATATAAATAATATA
81746256 TAATAACTTT
Statistics
Matches: 79, Mismatches: 11, Indels: 10
0.79 0.11 0.10
Matches are distributed among these distances:
34 2 0.03
35 43 0.54
36 20 0.25
37 13 0.16
38 1 0.01
ACGTcount: A:0.68, C:0.02, G:0.01, T:0.30
Consensus pattern (36 bp):
ATAATATAAAATATAAATAATATAATAAATAAAACA
Found at i:81746321 original size:26 final size:27
Alignment explanation
Indices: 81746292--81746349 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 27
81746282 ATGTTTATAG
81746292 TAAAAATAAAT-AA-TATAT-AAAATCT
1 TAAAAATAAATAAATTATATAAAAAT-T
*
81746317 TTAAAATAAATAAATTATATAAAAATT
1 TAAAAATAAATAAATTATATAAAAATT
81746344 TAAAAA
1 TAAAAA
81746350 GGATTAAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
25 10 0.36
26 2 0.07
27 11 0.39
28 5 0.18
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.33
Consensus pattern (27 bp):
TAAAAATAAATAAATTATATAAAAATT
Found at i:81746322 original size:25 final size:26
Alignment explanation
Indices: 81746294--81746348 Score: 78
Period size: 25 Copynumber: 2.2 Consensus size: 26
81746284 GTTTATAGTA
*
81746294 AAAATAAAT-AA-TATATAAAATCTTT
1 AAAATAAATAAATTATATAAAA-ATTT
81746319 AAAATAAATAAATTATATAAAAATTT
1 AAAATAAATAAATTATATAAAAATTT
81746345 AAAA
1 AAAA
81746349 AGGATTAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
25 9 0.33
26 9 0.33
27 9 0.33
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (26 bp):
AAAATAAATAAATTATATAAAAATTT
Found at i:81755348 original size:27 final size:27
Alignment explanation
Indices: 81755310--81755363 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
81755300 ATAGGGGTGA
81755310 AGGGTACCCCACAGGCGGCACCAGTGG
1 AGGGTACCCCACAGGCGGCACCAGTGG
*
81755337 AGGGTACCCCACAGGCGGCACCGGTGG
1 AGGGTACCCCACAGGCGGCACCAGTGG
81755364 TGCCTTTCTC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.20, C:0.33, G:0.39, T:0.07
Consensus pattern (27 bp):
AGGGTACCCCACAGGCGGCACCAGTGG
Found at i:81755478 original size:25 final size:22
Alignment explanation
Indices: 81755450--81755494 Score: 63
Period size: 25 Copynumber: 1.9 Consensus size: 22
81755440 AAATTACAGA
81755450 AGAAGAAGATAGAAAGAAAGAAAGG
1 AGAAGAAGA-A-AAA-AAAGAAAGG
81755475 AGAAGAAGAAAAAAAAGAAA
1 AGAAGAAGAAAAAAAAGAAA
81755495 AGGTAATTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 7 0.35
23 3 0.15
24 1 0.05
25 9 0.45
ACGTcount: A:0.71, C:0.00, G:0.27, T:0.02
Consensus pattern (22 bp):
AGAAGAAGAAAAAAAAGAAAGG
Found at i:81761882 original size:15 final size:14
Alignment explanation
Indices: 81761851--81761901 Score: 50
Period size: 15 Copynumber: 3.6 Consensus size: 14
81761841 ATTTTCGGAG
*
81761851 TTTATTTTTTAAAA
1 TTTATTTTTTAATA
*
81761865 TTTATTATTTTCATA
1 TTTATT-TTTTAATA
*
81761880 TTTTATTTTTTTATA
1 -TTTATTTTTTAATA
81761895 -TTATTTT
1 TTTATTTT
81761902 AGTACATAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 7 0.22
14 6 0.19
15 13 0.41
16 6 0.19
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.73
Consensus pattern (14 bp):
TTTATTTTTTAATA
Found at i:81761898 original size:13 final size:13
Alignment explanation
Indices: 81761867--81761928 Score: 54
Period size: 13 Copynumber: 4.7 Consensus size: 13
81761857 TTTTAAAATT
81761867 TATTATTTTCATA
1 TATTATTTTCATA
* **
81761880 TTTTATTTTTTTA
1 TATTATTTTCATA
81761893 TATTATTTT-AGTA
1 TATTATTTTCA-TA
* *
81761906 CATAATGTTTCATA
1 TATTAT-TTTCATA
81761920 TATTATTTT
1 TATTATTTT
81761929 AGTTTTTTTA
Statistics
Matches: 37, Mismatches: 9, Indels: 6
0.71 0.17 0.12
Matches are distributed among these distances:
13 27 0.73
14 9 0.24
15 1 0.03
ACGTcount: A:0.27, C:0.05, G:0.03, T:0.65
Consensus pattern (13 bp):
TATTATTTTCATA
Found at i:81762013 original size:142 final size:144
Alignment explanation
Indices: 81761688--81762415 Score: 930
Period size: 142 Copynumber: 5.1 Consensus size: 144
81761678 TATTTTGGTA
* * *
81761688 TTTA-TTTTATTTTCAGATTTTAAATTTTTAAAATATACTATTTTCGTATTTTATTCTTTTATAT
1 TTTATTTTTATTTTCGGATTTT-ATTTTTTAAAATATACTATTTTCGTATTTTATTTTTTTATAT
*
81761752 TATTTTAGTACATAATGTTTCAAATGTATTATTTTAG-TTTTTTATATTAATTTAGAAAAAAAAC
65 TATTTTAGTACATAATGTTTC-AATGTATTATTTTAGTTTTTTTATATTAATTTAGTAAAAAAAC
* *
81761816 TTTGATTTTAGCCTTT
129 TCTGATTTTGGCCTTT
* * * *
81761832 TTTATTTTTATTTTCGGAGTTTATTTTTTAAAATTTATTATTTTCATATTTTATTTTTTTATATT
1 TTTATTTTTATTTTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTTTATATT
* *
81761897 ATTTTAGTACATAATGTTTC-ATATATTATTTTAGTTTTTTTATATTAAATTAG-AAAAAAAC-C
66 ATTTTAGTACATAATGTTTCAATGTATTATTTTAGTTTTTTTATATTAATTTAGTAAAAAAACTC
81761959 TGATTTTGGCCCTTT
131 TGATTTTGG-CCTTT
* * * * *
81761974 TTAATTTTTATTTTTGGATTTTATTTTTTAAGATATATTATTTTCGTATTTTGTTTTTTTATATT
1 TTTATTTTTATTTTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTTTATATT
* * * *
81762039 ATTTTAGTACATAATG-TTCCATGTATTATTTTTGTTTTTTTATATTAATTTAGT-AAAAATCTG
66 ATTTTAGTACATAATGTTTCAATGTATTATTTTAGTTTTTTTATATTAATTTAGTAAAAAAACTC
81762102 TGATTTTGGCCTTT
131 TGATTTTGGCCTTT
* * *
81762116 TTTA-TTTTGTTTTCGGA--TT-TTTTTAAAAATATACTATTTTCGTATTTT-GTTTTTTATATT
1 TTTATTTTTATTTTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTTTATATT
* *
81762176 ATTTTAGTACATAATGTTTCAAATGTATTATTTTGGTTTTTTTATATTAATTTAGT-AAAAAATT
66 ATTTTAGTACATAATGTTTC-AATGTATTATTTTAGTTTTTTTATATTAATTTAGTAAAAAAACT
*
81762240 CTGATTTTAGCCGTTTGT
130 CTGATTTTGGCC--TT-T
* * ** *
81762258 TTTTTATTTTATTTTTGGATTTTATTTTCCAAAATATACTATTTTTGTATTTTA-TTTTTT-TAT
1 TTTAT-TTTTATTTTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTTTATAT
* * * *
81762321 TATTTTAGTACATAATGTTTCATATATATTATTTTAGTATATTTATATTAATTTAGTAAAAAACC
65 TATTTTAGTACATAATGTTTCA-ATGTATTATTTTAGTTTTTTTATATTAATTTAGTAAAAAAAC
*
81762386 TCTGATCTTGGCCTTT
129 TCTGATTTTGGCCTTT
81762402 TTTA-TTTTATTTTC
1 TTTATTTTTATTTTC
81762416 AAATGTTTTA
Statistics
Matches: 513, Mismatches: 52, Indels: 40
0.85 0.09 0.07
Matches are distributed among these distances:
137 27 0.05
138 29 0.06
139 51 0.10
141 24 0.05
142 157 0.31
143 26 0.05
144 77 0.15
145 18 0.04
146 56 0.11
147 48 0.09
ACGTcount: A:0.27, C:0.06, G:0.08, T:0.59
Consensus pattern (144 bp):
TTTATTTTTATTTTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTTTATATT
ATTTTAGTACATAATGTTTCAATGTATTATTTTAGTTTTTTTATATTAATTTAGTAAAAAAACTC
TGATTTTGGCCTTT
Found at i:81762310 original size:285 final size:283
Alignment explanation
Indices: 81761688--81762415 Score: 950
Period size: 285 Copynumber: 2.5 Consensus size: 283
81761678 TATTTTGGTA
** *
81761688 TTTATTTTATTTTCAGATTTTAAATTTTTAAAATATACTATTTTCGTATTTTATTCTTTTATATT
1 TTTATTTTATTTTTGGATTTT--ATTTTTAAAATATACTATTTTCGTATTTT-TTTTTTTATATT
*
81761753 ATTTTAGTACATAATGTTTCAAATGTATTATTTTAG-TTTTTTATATTAATTTAGAAAAAAAACT
63 ATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTTTTTTTATATTAATTTAG-TAAAAAACT
* * * * *
81761817 TTGATTTTAGCCTTTTTTATTTTTATTTTCGGAGTTTATTTTTTAAAATTTATTATTTTCATATT
127 CTGATTTTGGCCTTTTTTA-TTTTATTTTCGGAG-TTATTTTTAAAAATATACTATTTTCATATT
*
81761882 TTATTTTTTTATATTATTTTAGTACATAATGTTTCATATATTATTTTAGTTTTTTTATATTAAAT
190 TTAGTTTTTTATATTATTTTAGTACATAATGTTTCATATATTATTTTAGTTTTTTTATATTAAAT
*
81761947 TAGAAAAAAACCTGATTTTGGCCCTTTTT
255 TAGAAAAAAACCTGATTTTAGCCCTTTTT
** * *
81761976 AAT-TTTTATTTTTGGATTTTATTTTTTAAGATATATTATTTTCGTATTTTGTTTTTTTATATTA
1 TTTATTTTATTTTTGGATTTTA-TTTTTAAAATATACTATTTTCGTATTTT-TTTTTTTATATTA
* * * *
81762040 TTTTAGTACATAATG-TTC-CATGTATTATTTTTGTTTTTTTATATTAATTTAGTAAAAATCTGT
64 TTTTAGTACATAATGTTTCAAATGTATTATTTTAGTTTTTTTATATTAATTTAGTAAAAAACTCT
* *
81762103 GATTTTGGCCTTTTTTATTTTGTTTTCGGA-TT-TTTTTAAAAATATACTATTTTCGTATTTT-G
129 GATTTTGGCCTTTTTTATTTTATTTTCGGAGTTATTTTTAAAAATATACTATTTTCATATTTTAG
* * *
81762165 TTTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTTGGTTTTTTTATATTAATTTA
194 TTTTTTATATTATTTTAGTACATAATGTTTC--ATATATTATTTTAGTTTTTTTATATTAAATTA
** *
81762230 GTAAAAAATTCTGATTTTAGCCGTTTGTTT
257 G-AAAAAAACCTGATTTTAGCC-CTT-TTT
* * *
81762260 TTTATTTTATTTTTGGATTTTATTTTCCAAAATATACTATTTTTGTATTTTATTTTTT-TATTAT
1 TTTATTTTATTTTTGGATTTTATTTT-TAAAATATACTATTTTCGTATTTTTTTTTTTATATTAT
* * * *
81762324 TTTAGTACATAATGTTTCATATATATTATTTTAGTATATTTATATTAATTTAGTAAAAAACCTCT
65 TTTAGTACATAATGTTTCAAATGTATTATTTTAGTTTTTTTATATTAATTTAGTAAAAAA-CTCT
*
81762389 GATCTTGGCCTTTTTTATTTTATTTTC
129 GATTTTGGCCTTTTTTATTTTATTTTC
81762416 AAATGTTTTA
Statistics
Matches: 385, Mismatches: 43, Indels: 26
0.85 0.09 0.06
Matches are distributed among these distances:
279 31 0.08
280 25 0.06
281 32 0.08
282 17 0.04
283 34 0.09
284 54 0.14
285 95 0.25
286 81 0.21
287 15 0.04
288 1 0.00
ACGTcount: A:0.27, C:0.06, G:0.08, T:0.59
Consensus pattern (283 bp):
TTTATTTTATTTTTGGATTTTATTTTTAAAATATACTATTTTCGTATTTTTTTTTTTATATTATT
TTAGTACATAATGTTTCAAATGTATTATTTTAGTTTTTTTATATTAATTTAGTAAAAAACTCTGA
TTTTGGCCTTTTTTATTTTATTTTCGGAGTTATTTTTAAAAATATACTATTTTCATATTTTAGTT
TTTTATATTATTTTAGTACATAATGTTTCATATATTATTTTAGTTTTTTTATATTAAATTAGAAA
AAAACCTGATTTTAGCCCTTTTT
Found at i:81762890 original size:20 final size:20
Alignment explanation
Indices: 81762855--81762922 Score: 77
Period size: 20 Copynumber: 3.5 Consensus size: 20
81762845 AAAATATTAC
*
81762855 CTTTTTTTTCCTTCTCTTTCT
1 CTTTTTCTT-CTTCTCTTTCT
* *
81762876 CTTCTTCTTCTTCTCCTTCT
1 CTTTTTCTTCTTCTCTTTCT
*
81762896 CTTTTTC-T-TTCTCTTTTT
1 CTTTTTCTTCTTCTCTTTCT
81762914 CTTTTTCTT
1 CTTTTTCTT
81762923 TTTTCTTCCC
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
18 15 0.38
19 2 0.05
20 16 0.40
21 7 0.17
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (20 bp):
CTTTTTCTTCTTCTCTTTCT
Found at i:81762907 original size:12 final size:12
Alignment explanation
Indices: 81762859--81762930 Score: 65
Period size: 12 Copynumber: 5.8 Consensus size: 12
81762849 TATTACCTTT
81762859 TTTTTCCTTCTC
1 TTTTTCCTTCTC
*
81762871 TTTCT-CTTCTTC
1 TTTTTCCTTC-TC
81762883 TTCTTCTCCTTCTC
1 TT-TT-TCCTTCTC
*
81762897 TTTTTCTTTCTC
1 TTTTTCCTTCTC
* *
81762909 TTTTTCTTTTTC
1 TTTTTCCTTCTC
*
81762921 TTTTTTCTTC
1 TTTTTCCTTC
81762931 CCTCACCAAT
Statistics
Matches: 49, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
11 4 0.08
12 33 0.67
13 3 0.06
14 5 0.10
15 4 0.08
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (12 bp):
TTTTTCCTTCTC
Found at i:81762910 original size:26 final size:27
Alignment explanation
Indices: 81762863--81762929 Score: 77
Period size: 26 Copynumber: 2.6 Consensus size: 27
81762853 ACCTTTTTTT
*
81762863 TCCTTCTCTTTCTC-TTCTTCTTCTTC
1 TCCTTCTCTTTTTCTTTCTTCTTCTTC
*
81762889 TCCTTCTCTTTTTCTTTC-TCTTTTTC
1 TCCTTCTCTTTTTCTTTCTTCTTCTTC
**
81762915 TTTTTCT-TTTTTCTT
1 TCCTTCTCTTTTTCTT
81762930 CCCTCACCAA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
25 8 0.22
26 25 0.69
27 3 0.08
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (27 bp):
TCCTTCTCTTTTTCTTTCTTCTTCTTC
Found at i:81762924 original size:6 final size:6
Alignment explanation
Indices: 81762895--81762925 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
81762885 CTTCTCCTTC
*
81762895 TCTTTT TCTTTC TCTTTT TCTTTT TCTTTT T
1 TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT T
81762926 TCTTCCCTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (6 bp):
TCTTTT
Found at i:81763003 original size:6 final size:6
Alignment explanation
Indices: 81762946--81763003 Score: 50
Period size: 6 Copynumber: 10.2 Consensus size: 6
81762936 CCAATGCCGC
* * * * *
81762946 CTCCTC CTCCTT CTTCTT CTTCTT CTTCTT CT-CTT CT-CTT CTCTTT
1 CTCCTT CTCCTT CTCCTT CTCCTT CTCCTT CTCCTT CTCCTT CTCCTT
81762992 CT-CTT CTCCTT C
1 CTCCTT CTCCTT C
81763004 CCCCTTTCTT
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
5 14 0.30
6 32 0.70
ACGTcount: A:0.00, C:0.43, G:0.00, T:0.57
Consensus pattern (6 bp):
CTCCTT
Found at i:81763020 original size:3 final size:3
Alignment explanation
Indices: 81762955--81762987 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
81762945 CCTCCTCCTC
81762955 CTT CTT CTT CTT CTT CTT CTT C-T CTT C-T CTT CT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CT
81762988 CTTTCTCTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
2 4 0.14
3 24 0.86
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (3 bp):
CTT
Found at i:81763114 original size:22 final size:22
Alignment explanation
Indices: 81763086--81763127 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
81763076 ACAAAAGCAA
81763086 TGGCAGTG-AGGAGTCCCGTCCG
1 TGGCAGTGCA-GAGTCCCGTCCG
81763108 TGGCAGTGCAGAGTCCCGTC
1 TGGCAGTGCAGAGTCCCGTC
81763128 GGTGCAGAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
22 18 0.95
23 1 0.05
ACGTcount: A:0.14, C:0.29, G:0.38, T:0.19
Consensus pattern (22 bp):
TGGCAGTGCAGAGTCCCGTCCG
Found at i:81763141 original size:21 final size:22
Alignment explanation
Indices: 81763096--81763141 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
81763086 TGGCAGTGAG
*
81763096 GAGTCCCGTCCGTGGCAGTGCA
1 GAGTCCCGTCCGTGGCAGAGCA
* *
81763118 GAGTCCCGTCGGT-GCAGAGGA
1 GAGTCCCGTCCGTGGCAGAGCA
81763139 GAG
1 GAG
81763142 ACCGGTGCCG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 9 0.43
22 12 0.57
ACGTcount: A:0.17, C:0.26, G:0.41, T:0.15
Consensus pattern (22 bp):
GAGTCCCGTCCGTGGCAGAGCA
Found at i:81764380 original size:22 final size:22
Alignment explanation
Indices: 81764341--81764399 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
81764331 GTTTTAAGAA
*
81764341 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
81764362 TTGTTTTAATATTTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
81764384 GT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
81764400 AATTTATTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 16 0.47
22 11 0.32
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:81764416 original size:26 final size:24
Alignment explanation
Indices: 81764370--81764429 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 24
81764360 ATTTGTTTTA
*
81764370 ATATTTATTTTTATGTTTTTAAAT
1 ATATTTATTTTTATATTTTTAAAT
81764394 ATATTTAATTTATTATATTTTTAAAT
1 ATATTT-ATTT-TTATATTTTTAAAT
* *
81764420 TTTTTTATTT
1 ATATTTATTT
81764430 AATGAAATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.19
25 8 0.26
26 17 0.55
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (24 bp):
ATATTTATTTTTATATTTTTAAAT
Found at i:81764429 original size:25 final size:26
Alignment explanation
Indices: 81764373--81764430 Score: 75
Period size: 25 Copynumber: 2.3 Consensus size: 26
81764363 TGTTTTAATA
*
81764373 TTTATTT-TTATGTTTTTAAATATAT
1 TTTATTTATTATATTTTTAAATATAT
* *
81764398 TTAATTTATTATATTTTTAAAT-TTT
1 TTTATTTATTATATTTTTAAATATAT
81764423 TTTATTTA
1 TTTATTTA
81764431 ATGAAATAAG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 15 0.54
26 13 0.46
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (26 bp):
TTTATTTATTATATTTTTAAATATAT
Found at i:81765560 original size:16 final size:15
Alignment explanation
Indices: 81765526--81765569 Score: 52
Period size: 16 Copynumber: 2.9 Consensus size: 15
81765516 ATCTAAACAT
81765526 ATTCAAATTAATCTC
1 ATTCAAATTAATCTC
* *
81765541 ATTCAAATATATTTTC
1 ATTCAAAT-TAATCTC
*
81765557 ATTCAATTTAATC
1 ATTCAAATTAATC
81765570 CAAACACATA
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
15 11 0.48
16 12 0.52
ACGTcount: A:0.39, C:0.16, G:0.00, T:0.45
Consensus pattern (15 bp):
ATTCAAATTAATCTC
Found at i:81768897 original size:67 final size:66
Alignment explanation
Indices: 81768742--81768919 Score: 191
Period size: 67 Copynumber: 2.7 Consensus size: 66
81768732 AATACTTAGT
* * * *
81768742 ACCACCCATGTGACCTAGCCAC-TTTATCTCGCAGCTCTCTTGTCTACATGGTGTCCTTCACCTG
1 ACCACCCATGTGACCTAGCCACATTTATCTCGTAGCTCTCTTGTCTACATGGTATACATCACC-G
81768806 GA
65 GA
* * *
81768808 ACCACACATGCGACCTAGCCACATTTATCCCGTAGCTCTCTTGTCTACATGGTATACATC-CC-G
1 ACCACCCATGTGACCTAGCCACATTTATCTCGTAGCTCTCTTGTCTACATGGTATACATCACCGG
*
81768871 T
66 A
* * *
81768872 ATCACCCATGTGACCTAGCTACCACATAGTATCTCATAGCTCTCTTGT
1 ACCACCCATGTGACCTAG---CCACAT-TTATCTCGTAGCTCTCTTGT
81768920 ACACATGATG
Statistics
Matches: 93, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
64 16 0.17
66 22 0.24
67 38 0.41
68 17 0.18
ACGTcount: A:0.22, C:0.34, G:0.15, T:0.30
Consensus pattern (66 bp):
ACCACCCATGTGACCTAGCCACATTTATCTCGTAGCTCTCTTGTCTACATGGTATACATCACCGG
A
Found at i:81770913 original size:23 final size:22
Alignment explanation
Indices: 81770840--81770914 Score: 59
Period size: 22 Copynumber: 3.4 Consensus size: 22
81770830 AAGTGCCGAT
81770840 ATAT-ATAGCCGAAGCTATCTCA
1 ATATCATAGCCGAAG-TATCTCA
* *
81770862 ATATCTATTGCACTGAAGT-GC-CA
1 ATATC-ATAGC-C-GAAGTATCTCA
81770885 AT-TCATAGCCGAAGTTATCTCA
1 ATATCATAGCCGAAG-TATCTCA
81770907 ATATCATA
1 ATATCATA
81770915 TCTCAATAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 15
0.68 0.07 0.25
Matches are distributed among these distances:
19 4 0.10
20 2 0.05
21 5 0.12
22 10 0.24
23 9 0.22
24 5 0.12
25 2 0.05
26 4 0.10
ACGTcount: A:0.35, C:0.21, G:0.13, T:0.31
Consensus pattern (22 bp):
ATATCATAGCCGAAGTATCTCA
Found at i:81771669 original size:28 final size:28
Alignment explanation
Indices: 81771638--81771691 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
81771628 TTGTTTATCT
81771638 AACAACATGCATTTTCTCTCATCAAAAC
1 AACAACATGCATTTTCTCTCATCAAAAC
*
81771666 AACAACGTGCATTTTCTCTCATCAAA
1 AACAACATGCATTTTCTCTCATCAAA
81771692 CATCAAAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.37, C:0.28, G:0.06, T:0.30
Consensus pattern (28 bp):
AACAACATGCATTTTCTCTCATCAAAAC
Found at i:81776888 original size:40 final size:40
Alignment explanation
Indices: 81776842--81776940 Score: 139
Period size: 40 Copynumber: 2.5 Consensus size: 40
81776832 AACTATGTTT
*
81776842 GGCACTAAGTGTGCGATTTGAAATAGCTTCGACTATAAAT-A
1 GGCACTAAGTGTGCGATATGAAATAGCTTCGACTAT--ATGA
* *
81776883 -GCACTAAGTGTGCGAAATGAAATAGCTTCGGCTATATGA
1 GGCACTAAGTGTGCGATATGAAATAGCTTCGACTATATGA
81776922 GGCACTAAGTGTGCGATAT
1 GGCACTAAGTGTGCGATAT
81776941 CGAGATAACT
Statistics
Matches: 52, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
38 2 0.04
39 1 0.02
40 49 0.94
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.27
Consensus pattern (40 bp):
GGCACTAAGTGTGCGATATGAAATAGCTTCGACTATATGA
Found at i:81783387 original size:37 final size:37
Alignment explanation
Indices: 81783324--81783425 Score: 150
Period size: 37 Copynumber: 2.8 Consensus size: 37
81783314 AGCTCAGATG
* * * *
81783324 AAATCTCCACATGAAGTTATCAGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
81783361 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
81783398 TAATCTCCACACGTAGTCATTGGGTCTT
1 AAATCTCCACACGTAGTCATCGGGTCTT
81783426 TAGAGCTCGG
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 59 1.00
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.26
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:81783622 original size:47 final size:47
Alignment explanation
Indices: 81783544--81784290 Score: 1215
Period size: 47 Copynumber: 15.7 Consensus size: 47
81783534 CCCTTCGGGA
* * * * * *
81783544 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
81783591 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81783638 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
81783685 CTTATAACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81783732 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
81783779 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81783828 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
81783875 CTTATCACATATATTACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATA-TACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
81783923 CTTATCACATATATACACTTCCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
81783970 CTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81784017 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
81784064 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81784113 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
81784160 CTTATCACATATATATACACTTCCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81784209 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81784256 CTTATCACATATATATACACTTTCACATTCATCAC
1 CTTATCAC--ATATATACACTTTCACATTCATCAC
81784291 TTTCCAATGA
Statistics
Matches: 655, Mismatches: 36, Indels: 16
0.93 0.05 0.02
Matches are distributed among these distances:
47 450 0.69
48 46 0.07
49 159 0.24
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:81783829 original size:96 final size:96
Alignment explanation
Indices: 81783544--81784290 Score: 1256
Period size: 96 Copynumber: 7.9 Consensus size: 96
81783534 CCCTTCGGGA
* * * * * * * *
81783544 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
81783607 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATTGGCCATTAGGC
*
81783638 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT-A-ACATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
* *
81783701 ACTTTCACATTCATCACATCGGCTATTAGGC
66 ACTTTCACATTCATCACATTGGCCATTAGGC
81783732 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
81783797 ACTTTCACATTCATCACATTGGCCATTCGGC
66 ACTTTCACATTCATCACATTGGCCATTAGGC
81783828 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT-TAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
81783892 ACTTTCACATTCATCACATTGGCCATTAGGC
66 ACTTTCACATTCATCACATTGGCCATTAGGC
* * *
81783923 CTTATCACATATATACACTTCCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
**
81783986 ACTTTCACATTCATCACATCAGCCATTAGGC
66 ACTTTCACATTCATCACATTGGCCATTAGGC
81784017 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
81784082 ACTTTCACATTCATCACATTGGCCATTCGGC
66 ACTTTCACATTCATCACATTGGCCATTAGGC
81784113 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
* *
81784178 ACTTCCACATTCATCACATTGGCCATTCGGC
66 ACTTTCACATTCATCACATTGGCCATTAGGC
81784209 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
81784274 ACTTTCACATTCATCAC
66 ACTTTCACATTCATCAC
81784291 TTTCCAATGA
Statistics
Matches: 619, Mismatches: 27, Indels: 12
0.94 0.04 0.02
Matches are distributed among these distances:
93 5 0.01
94 218 0.35
95 86 0.14
96 310 0.50
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATTGGCCATTAGGC
Found at i:81783979 original size:22 final size:22
Alignment explanation
Indices: 81783904--81783979 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
81783894 TTTCACATTC
*
81783904 ATCACATTGGCCATTAGGCCTT
1 ATCACATTGGCCATTCGGCCTT
*** ** *
81783926 ATCACATATATACACTTCCACATT
1 ATCACAT-TGGCCA-TTCGGCCTT
81783950 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
81783973 ATCACAT
1 ATCACAT
81783980 ATATACACTT
Statistics
Matches: 38, Mismatches: 13, Indels: 6
0.67 0.23 0.11
Matches are distributed among these distances:
22 14 0.37
23 9 0.24
24 8 0.21
25 7 0.18
ACGTcount: A:0.28, C:0.30, G:0.11, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:81784053 original size:285 final size:285
Alignment explanation
Indices: 81783544--81784290 Score: 1307
Period size: 285 Copynumber: 2.6 Consensus size: 285
81783534 CCCTTCGGGA
* * * * * * * *
81783544 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATA-TACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATTACA
*
81783608 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
66 CTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
* * *
81783673 CGGCCATTAGGCCTTATAACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATC
131 CGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGCCTTATC
81783738 ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTC
196 ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTC
81783803 ACATTCATCACATTGGCCATTCGGC
261 ACATTCATCACATTGGCCATTCGGC
81783828 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATTACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATTACA
*
81783893 CTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTCCACATTCATCACAT
66 CTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
* *
81783958 TGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGCCTTATC
131 CGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGCCTTATC
81784023 ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTC
196 ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTC
81784088 ACATTCATCACATTGGCCATTCGGC
261 ACATTCATCACATTGGCCATTCGGC
81784113 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT-TAC
* *
81784178 ACTTCCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
65 ACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
81784243 TCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCAC
130 TCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCAC
81784291 TTTCCAATGA
Statistics
Matches: 439, Mismatches: 20, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
284 52 0.12
285 278 0.63
286 84 0.19
288 25 0.06
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (285 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATTACA
CTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
CGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGCCTTATC
ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTC
ACATTCATCACATTGGCCATTCGGC
Found at i:81788428 original size:161 final size:160
Alignment explanation
Indices: 81788163--81788493 Score: 484
Period size: 161 Copynumber: 2.1 Consensus size: 160
81788153 CCAGCATGAT
* * ***
81788163 TGCTCTTCGGGACCTAACCCGGATATAACACCAGCACAAATGCTCTTCGGGGTTTAGCACGGATA
1 TGCTCTTCGGAACCTAACCCGGATACAACACCAGCACAAATGCTCTTCGGAACTTAGCACGGATA
* *
81788228 TATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGG
66 CATCACTAGCACGAATGCTCTTCGAAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGG
* *
81788293 GACTTAGCCCGGCTACATCACTAGCACAATA
131 AACTTAGCCCGGATACATCACTAGCACAA-A
* ** * * *
81788324 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTC-CGGAT
1 TGCTCTTCGGAACCTAACCCGGATACAACACCAGCACAAATGCTCTTCGGAACTTAG-CACGGAT
81788388 ACATCACTAGCACGAATGCTCTTCGAAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCG
65 ACATCACTAGCACGAATGCTCTTCGAAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCG
* *
81788453 GAACTTAGTCCGGATACATCACTAGCACGAA
130 GAACTTAGCCCGGATACATCACTAGCACAAA
81788484 TGCTCTTCGG
1 TGCTCTTCGG
81788494 GATTTAGCCC
Statistics
Matches: 152, Mismatches: 17, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
160 11 0.07
161 140 0.92
162 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (160 bp):
TGCTCTTCGGAACCTAACCCGGATACAACACCAGCACAAATGCTCTTCGGAACTTAGCACGGATA
CATCACTAGCACGAATGCTCTTCGAAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGG
AACTTAGCCCGGATACATCACTAGCACAAA
Found at i:81788515 original size:40 final size:40
Alignment explanation
Indices: 81788163--81788493 Score: 484
Period size: 40 Copynumber: 8.2 Consensus size: 40
81788153 CCAGCATGAT
* * ** * * * *
81788163 TGCTCTTCGGGACCTAACCCGGATATAACACCAGCACAAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*** *
81788203 TGCTCTTCGGGGTTTAG-CACGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTC-CGGATACATCACTAGCACGAA
81788243 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* * * *
81788283 TGCTCTTCGGGACTTAGCCCGGCTACATCACTAGCACAATA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGA-A
81788324 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
81788364 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
81788404 TGCTCTTCGAAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
81788444 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
81788484 TGCTCTTCGG
1 TGCTCTTCGG
81788494 GATTTAGCCC
Statistics
Matches: 267, Mismatches: 21, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.00
40 229 0.86
41 37 0.14
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:81789833 original size:37 final size:37
Alignment explanation
Indices: 81789774--81789875 Score: 168
Period size: 37 Copynumber: 2.8 Consensus size: 37
81789764 AGCTCAGATG
* * *
81789774 AAATCTCCACATGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
81789811 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
81789848 TAATCTCCACACGTAGTCATCGGGTCTT
1 AAATCTCCACACGTAGTCATCGGGTCTT
81789876 TAGAGCTAGG
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:81790070 original size:47 final size:47
Alignment explanation
Indices: 81789994--81790615 Score: 1034
Period size: 47 Copynumber: 13.2 Consensus size: 47
81789984 CTTCGGGACA
* * * * * * *
81789994 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
*
81790041 TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
81790088 TATCACATATATACACTTTCACATTCATCACATCGG-CATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
81790134 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
*
81790181 TATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
*
81790228 TATCACATATATGCACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
* *
81790275 TATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCT
1 TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
81790324 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
81790371 TATCACATATATACACTTTCACATTCATCACAT-GGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
*
81790417 TATCACATATATATACACTTTCACATTCATCACAT-GGCCATTCGGCCT
1 TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
81790465 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
81790512 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
* *
81790559 TATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCT
1 TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
81790608 TATCACAT
1 TATCACAT
81790616 TCATCACATC
Statistics
Matches: 546, Mismatches: 21, Indels: 16
0.94 0.04 0.03
Matches are distributed among these distances:
46 92 0.17
47 320 0.59
48 45 0.08
49 89 0.16
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
Found at i:81790616 original size:31 final size:31
Alignment explanation
Indices: 81790579--81790646 Score: 109
Period size: 31 Copynumber: 2.2 Consensus size: 31
81790569 ATATACACTT
** *
81790579 TCACATTCATCACATTGGCCATTCGGCCTTA
1 TCACATTCATCACATCAGCCATTAGGCCTTA
81790610 TCACATTCATCACATCAGCCATTAGGCCTTA
1 TCACATTCATCACATCAGCCATTAGGCCTTA
81790641 TCACAT
1 TCACAT
81790647 ATATATACAC
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.26, C:0.32, G:0.10, T:0.31
Consensus pattern (31 bp):
TCACATTCATCACATCAGCCATTAGGCCTTA
Found at i:81790625 original size:80 final size:80
Alignment explanation
Indices: 81790530--81790695 Score: 314
Period size: 80 Copynumber: 2.1 Consensus size: 80
81790520 ATATACACTT
* *
81790530 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATT
1 TCACATTCATCACATCAGCCATTAGGCCTTATCACATATATATACACTTCCACATTCATCACATT
81790595 GGCCATTCGGCCTTA
66 GGCCATTCGGCCTTA
81790610 TCACATTCATCACATCAGCCATTAGGCCTTATCACATATATATACACTTCCACATTCATCACATT
1 TCACATTCATCACATCAGCCATTAGGCCTTATCACATATATATACACTTCCACATTCATCACATT
81790675 GGCCATTCGGCCTTA
66 GGCCATTCGGCCTTA
81790690 TCACAT
1 TCACAT
81790696 ATATACACTT
Statistics
Matches: 84, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
80 84 1.00
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (80 bp):
TCACATTCATCACATCAGCCATTAGGCCTTATCACATATATATACACTTCCACATTCATCACATT
GGCCATTCGGCCTTA
Found at i:81790634 original size:127 final size:126
Alignment explanation
Indices: 81790483--81790742 Score: 432
Period size: 127 Copynumber: 2.0 Consensus size: 126
81790473 ATATACACTT
* *
81790483 TCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATATACACTTTCACATTCATCACATCG
1 TCACATTCATCACATCAGCCATTAGGCCTTATCACAATATATACACTTCCACATTCATCACATCG
* *
81790547 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTA
66 GCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
*
81790610 TCACATTCATCACATCAGCCATTAGGCCTTATCACATATATATACACTTCCACATTCATCACATT
1 TCACATTCATCACATCAGCCATTAGGCCTTATCACA-ATATATACACTTCCACATTCATCACATC
*
81790675 GGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
65 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
81790737 TCACAT
1 TCACAT
81790743 ATATATACAC
Statistics
Matches: 125, Mismatches: 6, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
127 81 0.65
129 44 0.35
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (126 bp):
TCACATTCATCACATCAGCCATTAGGCCTTATCACAATATATACACTTCCACATTCATCACATCG
GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
Found at i:81790666 original size:49 final size:49
Alignment explanation
Indices: 81790610--81790767 Score: 266
Period size: 49 Copynumber: 3.3 Consensus size: 49
81790600 TTCGGCCTTA
*
81790610 TCACATTCATCACATCAGCCATTAGGCCTTATCACATATATATACACTT
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTT
* * *
81790659 CCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATACACTT
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTT
81790706 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTT
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTT
81790755 TCACATTCATCAC
1 TCACATTCATCAC
81790768 TTTCCAATGA
Statistics
Matches: 100, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
47 44 0.44
49 56 0.56
ACGTcount: A:0.30, C:0.30, G:0.07, T:0.32
Consensus pattern (49 bp):
TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTT
Found at i:81803119 original size:32 final size:32
Alignment explanation
Indices: 81803083--81803153 Score: 90
Period size: 32 Copynumber: 2.2 Consensus size: 32
81803073 AATACAATTG
* * *
81803083 TTCTAAATACAAGTTATTCCAAATA-ATGATTA
1 TTCTAAATACAA-CTATTCCAAAAACATCATTA
*
81803115 TTCTAAATATAACTATTCCAAAAACATCATTA
1 TTCTAAATACAACTATTCCAAAAACATCATTA
81803147 TTCTAAA
1 TTCTAAA
81803154 AAATTAATTG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
31 10 0.29
32 24 0.71
ACGTcount: A:0.45, C:0.15, G:0.03, T:0.37
Consensus pattern (32 bp):
TTCTAAATACAACTATTCCAAAAACATCATTA
Found at i:81803296 original size:38 final size:38
Alignment explanation
Indices: 81803239--81803315 Score: 136
Period size: 38 Copynumber: 2.0 Consensus size: 38
81803229 TTTCAACTAA
81803239 AGTCATGTTCTTAACATACTTATTCTTAAACAACAATT
1 AGTCATGTTCTTAACATACTTATTCTTAAACAACAATT
* *
81803277 AGTCGTGTTCTTAAGATACTTATTCTTAAACAACAATT
1 AGTCATGTTCTTAACATACTTATTCTTAAACAACAATT
81803315 A
1 A
81803316 TTTTGAGCAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.36, C:0.17, G:0.08, T:0.39
Consensus pattern (38 bp):
AGTCATGTTCTTAACATACTTATTCTTAAACAACAATT
Found at i:81805167 original size:29 final size:29
Alignment explanation
Indices: 81805112--81805169 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
81805102 TTATAGGGAC
* *
81805112 TGAATCAAATTAGTCCCTCTATCATTAAA
1 TGAATCAAATTAATCCCTATATCATTAAA
81805141 TGAATCAAATTAATCCCTATAAT-ATTAAA
1 TGAATCAAATTAATCCCTAT-ATCATTAAA
81805170 AGGAACCAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 24 0.92
30 2 0.08
ACGTcount: A:0.43, C:0.17, G:0.05, T:0.34
Consensus pattern (29 bp):
TGAATCAAATTAATCCCTATATCATTAAA
Found at i:81809082 original size:19 final size:18
Alignment explanation
Indices: 81809038--81809085 Score: 71
Period size: 18 Copynumber: 2.6 Consensus size: 18
81809028 AATTGAATTT
81809038 TATTTTATAATAAGATAA
1 TATTTTATAATAAGATAA
81809056 TATTTTATAATAA-ATAA
1 TATTTTATAATAAGATAA
81809073 TATCTTTTATAAT
1 TA--TTTTATAAT
81809086 TTAATAATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
17 6 0.21
18 13 0.46
19 9 0.32
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (18 bp):
TATTTTATAATAAGATAA
Found at i:81813868 original size:27 final size:26
Alignment explanation
Indices: 81813808--81813869 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 26
81813798 ATAAGACTCC
81813808 ATTTTATTAGGATAATTAATATTAAG
1 ATTTTATTAGGATAATTAATATTAAG
* * * *
81813834 ATAATTATTAGGATTATTTAATTTTAGG
1 AT-TTTATTAGGA-TAATTAATATTAAG
81813862 ATTTTATT
1 ATTTTATT
81813870 TTAATTATCT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
26 2 0.07
27 14 0.48
28 13 0.45
ACGTcount: A:0.37, C:0.00, G:0.11, T:0.52
Consensus pattern (26 bp):
ATTTTATTAGGATAATTAATATTAAG
Found at i:81813884 original size:10 final size:10
Alignment explanation
Indices: 81813865--81813896 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
81813855 TTTTAGGATT
81813865 TTAT-TTTAA
1 TTATCTTTAA
81813874 TTATCTTTAA
1 TTATCTTTAA
81813884 TTATCTTTAA
1 TTATCTTTAA
81813894 TTA
1 TTA
81813897 ATTGTATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.62
Consensus pattern (10 bp):
TTATCTTTAA
Found at i:81815082 original size:9 final size:10
Alignment explanation
Indices: 81815060--81815087 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
81815050 CACATATAAC
81815060 AAAATACTCA
1 AAAATACTCA
81815070 AAAATACTCA
1 AAAATACTCA
81815080 AAAATACT
1 AAAATACT
81815088 ATACATGCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.61, C:0.18, G:0.00, T:0.21
Consensus pattern (10 bp):
AAAATACTCA
Found at i:81815673 original size:15 final size:15
Alignment explanation
Indices: 81815655--81815719 Score: 55
Period size: 15 Copynumber: 4.3 Consensus size: 15
81815645 TCACCCCATT
81815655 TTTAATTTTATTTTA
1 TTTAATTTTATTTTA
81815670 TTT-ATTATTATTTT-
1 TTTAATT-TTATTTTA
*
81815684 TTATATTTTTTATTTTA
1 TT-TA-ATTTTATTTTA
*
81815701 -CTAATTTTTATTTTA
1 TTTAA-TTTTATTTTA
81815716 TTTA
1 TTTA
81815720 TTATTCTTAT
Statistics
Matches: 39, Mismatches: 4, Indels: 13
0.70 0.07 0.23
Matches are distributed among these distances:
14 5 0.13
15 23 0.59
16 9 0.23
17 2 0.05
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.74
Consensus pattern (15 bp):
TTTAATTTTATTTTA
Found at i:81815700 original size:27 final size:28
Alignment explanation
Indices: 81815653--81815792 Score: 75
Period size: 30 Copynumber: 5.0 Consensus size: 28
81815643 AATCACCCCA
81815653 TTTTTA-ATTTTATT-TTATTTATTATTAT
1 TTTTTATATTTT-TTATTA-TTATTATTAT
*
81815681 TTTTTATATTTTTTATT-TTACTA--A-
1 TTTTTATATTTTTTATTATTATTATTAT
*
81815705 TTTTTAT-TTTATTTATTATTCTTA-TACT
1 TTTTTATATTT-TTTATTATTATTATTA-T
* * *
81815733 TATATTTAAATTTTTTTTTGTTATT-TCTAT
1 T-T-TTTATATTTTTTATTATTATTAT-TAT
*
81815763 ATTTTTAGTATTTTTT-TTACTATTATTAT
1 -TTTTTA-TATTTTTTATTATTATTATTAT
81815792 T
1 T
81815793 ACAATTGGTA
Statistics
Matches: 87, Mismatches: 10, Indels: 30
0.69 0.08 0.24
Matches are distributed among these distances:
23 3 0.03
24 13 0.15
25 5 0.06
26 1 0.01
27 5 0.06
28 10 0.11
29 21 0.24
30 23 0.26
31 6 0.07
ACGTcount: A:0.24, C:0.04, G:0.01, T:0.71
Consensus pattern (28 bp):
TTTTTATATTTTTTATTATTATTATTAT
Found at i:81815735 original size:24 final size:24
Alignment explanation
Indices: 81815659--81815740 Score: 75
Period size: 22 Copynumber: 3.5 Consensus size: 24
81815649 CCCATTTTTA
*
81815659 ATTTTAT-TTTATTTATTATTATT
1 ATTTTATATTTATTTATTATTCTT
*
81815682 -TTTTATATTT-TTTATT-TTACTA
1 ATTTTATATTTATTTATTATT-CTT
81815704 ATTTT-TATTTTATTTATTATTCTT
1 ATTTTATA-TTTATTTATTATTCTT
*
81815728 ATACTTATATTTA
1 AT-TTTATATTTA
81815741 AATTTTTTTT
Statistics
Matches: 47, Mismatches: 4, Indels: 14
0.72 0.06 0.22
Matches are distributed among these distances:
21 2 0.04
22 15 0.32
23 10 0.21
24 10 0.21
25 8 0.17
26 2 0.04
ACGTcount: A:0.26, C:0.04, G:0.00, T:0.71
Consensus pattern (24 bp):
ATTTTATATTTATTTATTATTCTT
Found at i:81816880 original size:6 final size:6
Alignment explanation
Indices: 81816871--81816906 Score: 56
Period size: 6 Copynumber: 6.0 Consensus size: 6
81816861 ATAAAAAGAG
81816871 GAAAAA GAAAAAA GAAAAA -AAAAA GAAAAA GAAAAA
1 GAAAAA G-AAAAA GAAAAA GAAAAA GAAAAA GAAAAA
81816907 TATTTATATA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
5 5 0.18
6 17 0.61
7 6 0.21
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (6 bp):
GAAAAA
Found at i:81816892 original size:17 final size:17
Alignment explanation
Indices: 81816872--81816906 Score: 61
Period size: 17 Copynumber: 2.0 Consensus size: 17
81816862 TAAAAAGAGG
81816872 AAAAAGAAAAAAGAAAAA
1 AAAAAG-AAAAAGAAAAA
81816890 AAAAAGAAAAAGAAAAA
1 AAAAAGAAAAAGAAAAA
81816907 TATTTATATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (17 bp):
AAAAAGAAAAAGAAAAA
Found at i:81820388 original size:39 final size:39
Alignment explanation
Indices: 81820184--81820406 Score: 232
Period size: 40 Copynumber: 5.6 Consensus size: 39
81820174 TTGAATGCTG
* * * * * *
81820184 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAA
* * *
81820224 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGG-CATTGTGCGAGTTACTAAA
*
81820264 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
* **
81820304 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCA-TTGTGCGAGTTACTAAA
* *
81820344 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* * *
81820383 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
81820407 TGAACGAGGA
Statistics
Matches: 158, Mismatches: 20, Indels: 11
0.84 0.11 0.06
Matches are distributed among these distances:
39 39 0.25
40 109 0.69
41 10 0.06
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:81820426 original size:79 final size:80
Alignment explanation
Indices: 81820259--81820441 Score: 217
Period size: 79 Copynumber: 2.3 Consensus size: 80
81820249 GTGCGAGATA
* * *
81820259 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
81820324 CAGTCGTGCGAGTTG
66 CAGTCGAACGAGGAG
* * * *
81820339 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
* *
81820403 CATTTGAACGAGGAG
66 CAGTCGAACGAGGAG
* *
81820418 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
81820442 TACGTGATTT
Statistics
Matches: 86, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
78 14 0.16
79 45 0.52
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CAGTCGAACGAGGAG
Found at i:81822395 original size:13 final size:12
Alignment explanation
Indices: 81822377--81822426 Score: 64
Period size: 13 Copynumber: 3.9 Consensus size: 12
81822367 ATAAGCAACC
81822377 ATTATCATCTTAT
1 ATTATCAT-TTAT
*
81822390 ATTATCATTTACC
1 ATTATCATTTA-T
81822403 ATTATCATTTTAT
1 ATTATCA-TTTAT
81822416 ATTATCATTTA
1 ATTATCATTTA
81822427 CATTCATTCT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
12 7 0.21
13 22 0.67
14 4 0.12
ACGTcount: A:0.32, C:0.14, G:0.00, T:0.54
Consensus pattern (12 bp):
ATTATCATTTAT
Found at i:81822403 original size:26 final size:26
Alignment explanation
Indices: 81822374--81822427 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
81822364 CATATAAGCA
81822374 ACCATTATCATCTTATATTATCATTT
1 ACCATTATCATCTTATATTATCATTT
*
81822400 ACCATTATCATTTTATATTATCATTT
1 ACCATTATCATCTTATATTATCATTT
81822426 AC
1 AC
81822428 ATTCATTCTC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.31, C:0.19, G:0.00, T:0.50
Consensus pattern (26 bp):
ACCATTATCATCTTATATTATCATTT
Found at i:81825201 original size:44 final size:42
Alignment explanation
Indices: 81825062--81825207 Score: 120
Period size: 44 Copynumber: 3.4 Consensus size: 42
81825052 CTAGTGTCCC
* * *
81825062 AGACGTGGTCTTACATGT-AATCGAATATCGATGCTACTATCCC
1 AGACGTGGTCTTACACGTAAATC-AATATCGATGCAAC-ATCCT
* **
81825105 AGACAG-GGTCTTACACG-AAATC-ATATACAATGACAATGTCCT
1 AGAC-GTGGTCTTACACGTAAATCAATAT-CGATG-CAACATCCT
* * *
81825147 AAACATGGTCTTACACGTAAATCACAAATCGATGCCAACATCCT
1 AGACGTGGTCTTACACGTAAATCA-ATATCGATG-CAACATCCT
81825191 AGACGTGGTCTTACACG
1 AGACGTGGTCTTACACG
81825208 ATAACATATA
Statistics
Matches: 80, Mismatches: 15, Indels: 15
0.73 0.14 0.14
Matches are distributed among these distances:
41 4 0.05
42 21 0.26
43 25 0.31
44 27 0.34
45 3 0.04
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (42 bp):
AGACGTGGTCTTACACGTAAATCAATATCGATGCAACATCCT
Found at i:81835285 original size:42 final size:42
Alignment explanation
Indices: 81835226--81835306 Score: 144
Period size: 42 Copynumber: 1.9 Consensus size: 42
81835216 TAAAAAACCA
* *
81835226 AACTCTTTGATTGCATCATTAGATTGAAGATTCCAACTTCCT
1 AACTCTTTGATTACATCATTAGAATGAAGATTCCAACTTCCT
81835268 AACTCTTTGATTACATCATTAGAATGAAGATTCCAACTT
1 AACTCTTTGATTACATCATTAGAATGAAGATTCCAACTT
81835307 TGAAAAGGTT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.32, C:0.20, G:0.11, T:0.37
Consensus pattern (42 bp):
AACTCTTTGATTACATCATTAGAATGAAGATTCCAACTTCCT
Found at i:81841596 original size:4 final size:4
Alignment explanation
Indices: 81841589--81841618 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
81841579 ATCTCTCTCT
81841589 CTCC CTCC CTCC CTCC CTCC CTCC CTCC CT
1 CTCC CTCC CTCC CTCC CTCC CTCC CTCC CT
81841619 TTGTTGCAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.00, C:0.73, G:0.00, T:0.27
Consensus pattern (4 bp):
CTCC
Found at i:81843769 original size:19 final size:19
Alignment explanation
Indices: 81843745--81843792 Score: 69
Period size: 19 Copynumber: 2.5 Consensus size: 19
81843735 GTTCTTTTTT
**
81843745 TTTTCTTATAATTTCATCA
1 TTTTCTTATAAACTCATCA
81843764 TTTTCTTATAAACTCATCA
1 TTTTCTTATAAACTCATCA
*
81843783 TATTCTTATA
1 TTTTCTTATA
81843793 TAACATATTA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.29, C:0.17, G:0.00, T:0.54
Consensus pattern (19 bp):
TTTTCTTATAAACTCATCA
Found at i:81845486 original size:38 final size:39
Alignment explanation
Indices: 81845443--81845518 Score: 136
Period size: 38 Copynumber: 2.0 Consensus size: 39
81845433 TTAGATTTGA
*
81845443 TGTATGGTTTTGTTTCACCTTCATCTTACGTAT-ATTGT
1 TGTATGGTTTTGTTTCACCTTCATCTTACATATGATTGT
81845481 TGTATGGTTTTGTTTCACCTTCATCTTACATATGATTG
1 TGTATGGTTTTGTTTCACCTTCATCTTACATATGATTG
81845519 CTACTTCTTT
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
38 32 0.89
39 4 0.11
ACGTcount: A:0.17, C:0.16, G:0.16, T:0.51
Consensus pattern (39 bp):
TGTATGGTTTTGTTTCACCTTCATCTTACATATGATTGT
Found at i:81846461 original size:13 final size:14
Alignment explanation
Indices: 81846432--81846461 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
81846422 CCAGAAAAGT
81846432 AAATTATTTTTCAG
1 AAATTATTTTTCAG
81846446 AAATTATTTTTC-G
1 AAATTATTTTTCAG
81846459 AAA
1 AAA
81846462 AATATTTTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.40, C:0.07, G:0.07, T:0.47
Consensus pattern (14 bp):
AAATTATTTTTCAG
Done.