Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 237 of 295
Found at i:81853268 original size:29 final size:28
Alignment explanation
Indices: 81853227--81853283 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 28
81853217 ATCTGAAGTC
81853227 CTGATATCATGG-CTCGAAGCCAAATCAG
1 CTGATATCATGGCCT-GAAGCCAAATCAG
81853255 CTGATATTCATGGCCTGAAGCCAAATCAG
1 CTGATA-TCATGGCCTGAAGCCAAATCAG
81853284 TATATCTTGC
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
28 6 0.22
29 19 0.70
30 2 0.07
ACGTcount: A:0.32, C:0.25, G:0.21, T:0.23
Consensus pattern (28 bp):
CTGATATCATGGCCTGAAGCCAAATCAG
Found at i:81854826 original size:6 final size:6
Alignment explanation
Indices: 81854775--81854843 Score: 57
Period size: 6 Copynumber: 11.5 Consensus size: 6
81854765 CCTTTTTTCC
* * * * * * *
81854775 CTTCCT CTTGTT CTTGTT CTTCTT TTTGTT CTTGTT CTTATT CTTCTT
1 CTTCTT CTTCTT CTTCTT CTTCTT CTTCTT CTTCTT CTTCTT CTTCTT
* *
81854823 CTTCTT GTTCTT CTTCCT CTT
1 CTTCTT CTTCTT CTTCTT CTT
81854844 TTCATGTTTC
Statistics
Matches: 52, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
6 52 1.00
ACGTcount: A:0.01, C:0.26, G:0.07, T:0.65
Consensus pattern (6 bp):
CTTCTT
Found at i:81854835 original size:9 final size:9
Alignment explanation
Indices: 81854775--81854843 Score: 57
Period size: 9 Copynumber: 7.7 Consensus size: 9
81854765 CCTTTTTTCC
*
81854775 CTTCCTCTT
1 CTTCTTCTT
* *
81854784 GTTCTTGTT
1 CTTCTTCTT
*
81854793 CTTCTTTTT
1 CTTCTTCTT
* *
81854802 GTTCTTGTT
1 CTTCTTCTT
*
81854811 CTTATTCTT
1 CTTCTTCTT
81854820 CTTCTTCTT
1 CTTCTTCTT
*
81854829 GTTCTTCTT
1 CTTCTTCTT
*
81854838 CCTCTT
1 CTTCTT
81854844 TTCATGTTTC
Statistics
Matches: 46, Mismatches: 14, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
9 46 1.00
ACGTcount: A:0.01, C:0.26, G:0.07, T:0.65
Consensus pattern (9 bp):
CTTCTTCTT
Found at i:81854838 original size:18 final size:18
Alignment explanation
Indices: 81854775--81854843 Score: 66
Period size: 18 Copynumber: 3.7 Consensus size: 18
81854765 CCTTTTTTCC
* *
81854775 CTTCCTCTTGTTCTTGTT
1 CTTCTTCTTCTTCTTGTT
* *
81854793 CTTCTTTTTGTTCTTGTT
1 CTTCTTCTTCTTCTTGTT
81854811 CTTATTCTTCTTCTTCTTGTT
1 C---TTCTTCTTCTTCTTGTT
*
81854832 CTTCTTCCTCTT
1 CTTCTTCTTCTT
81854844 TTCATGTTTC
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
18 27 0.63
21 16 0.37
ACGTcount: A:0.01, C:0.26, G:0.07, T:0.65
Consensus pattern (18 bp):
CTTCTTCTTCTTCTTGTT
Found at i:81857377 original size:20 final size:20
Alignment explanation
Indices: 81857352--81857391 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
81857342 AGACATTCAG
*
81857352 TTGTATCTTTTAAGGAGAGT
1 TTGTATCTTTTAAGAAGAGT
81857372 TTGTATCTTTTAAGAAGAGT
1 TTGTATCTTTTAAGAAGAGT
81857392 GATGTTCCCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.28, C:0.05, G:0.23, T:0.45
Consensus pattern (20 bp):
TTGTATCTTTTAAGAAGAGT
Found at i:81865041 original size:32 final size:32
Alignment explanation
Indices: 81865004--81865069 Score: 105
Period size: 32 Copynumber: 2.1 Consensus size: 32
81864994 ATACAAAACC
* *
81865004 AATATTTTAACCATATTTTAGAAATTAAATTA
1 AATATTTCAACCATATTTCAGAAATTAAATTA
*
81865036 AATATTTCAACCATATTTCAGTAATTAAATTA
1 AATATTTCAACCATATTTCAGAAATTAAATTA
81865068 AA
1 AA
81865070 AATACAAAAC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.47, C:0.09, G:0.03, T:0.41
Consensus pattern (32 bp):
AATATTTCAACCATATTTCAGAAATTAAATTA
Found at i:81866644 original size:22 final size:24
Alignment explanation
Indices: 81866592--81866644 Score: 56
Period size: 24 Copynumber: 2.3 Consensus size: 24
81866582 TTTTATAAAA
* *
81866592 TTTTCAAATTTTGTATATTATTAT
1 TTTTTAAAATTTGTATATTATTAT
**
81866616 TAATTAAAATTTGTAT-TTA-TAT
1 TTTTTAAAATTTGTATATTATTAT
81866638 TTTTTAA
1 TTTTTAA
81866645 TTTTAATTTT
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
22 8 0.35
23 3 0.13
24 12 0.52
ACGTcount: A:0.34, C:0.02, G:0.04, T:0.60
Consensus pattern (24 bp):
TTTTTAAAATTTGTATATTATTAT
Found at i:81877577 original size:11 final size:11
Alignment explanation
Indices: 81877561--81877591 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
81877551 GAAAAATTTT
81877561 TATTTTTATTA
1 TATTTTTATTA
81877572 TATTTTTATTA
1 TATTTTTATTA
81877583 TATTTTTAT
1 TATTTTTAT
81877592 GGAATTATTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (11 bp):
TATTTTTATTA
Found at i:81878856 original size:47 final size:47
Alignment explanation
Indices: 81878697--81878927 Score: 185
Period size: 48 Copynumber: 4.9 Consensus size: 47
81878687 TGCGACCCCG
* * * * * *
81878697 TATAAGACCATGTCTGGGACATGACGTAAGCATTGATATGAGATCCTA
1 TATAAGACCATATTTGGGACATGACATCAGCATCG-TATGAGATCCCA
* * * * * *
81878745 TATAAGACCATGTATGGGACATGACATTAGCATCATTATGCGATCCCG
1 TATAAGACCATATTTGGGACATGACATCAGCATC-GTATGAGATCCCA
* * * * *
81878793 TATAAGACTATGTTTGGGACATGGCATCGGCATCGTATGAGATCCCG
1 TATAAGACCATATTTGGGACATGACATCAGCATCGTATGAGATCCCA
* * *
81878840 TATGAGACCATATTTGGGATATAACATCAGCATCG-AGTTGAGATCCCA
1 TATAAGACCATATTTGGGACATGACATCAGCATCGTA--TGAGATCCCA
* * * * **
81878888 TGTAAGACCATATCTGGGATATGGCATTGGCATCGTATGA
1 TATAAGACCATATTTGGGACATGACATCAGCATCGTATGA
81878928 TATGTATGAG
Statistics
Matches: 149, Mismatches: 30, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
46 1 0.01
47 42 0.28
48 105 0.70
49 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (47 bp):
TATAAGACCATATTTGGGACATGACATCAGCATCGTATGAGATCCCA
Found at i:81878872 original size:95 final size:95
Alignment explanation
Indices: 81878686--81878927 Score: 252
Period size: 95 Copynumber: 2.5 Consensus size: 95
81878676 ATTAGGGTTA
* * * * * *
81878686 TTGCGACCCCGTATAAGACCATGTCTGGGACATGACGTAAGCATTGATATGAGATCCTATATAAG
1 TTGCGATCCCGTATAAGACCATGTCTGGGACATGGCATAGGCATCG-TATGAGATCCCATATAAG
* * * *
81878751 ACCATGTATGGGACATGACATTAGCATC-AT
65 ACCATATATGGGACATAACATCAGCATCGAG
* * * * *
81878781 TATGCGATCCCGTATAAGACTATGTTTGGGACATGGCATCGGCATCGTATGAGATCCCGTATGAG
1 T-TGCGATCCCGTATAAGACCATGTCTGGGACATGGCATAGGCATCGTATGAGATCCCATATAAG
* *
81878846 ACCATATTTGGGATATAACATCAGCATCGAG
65 ACCATATATGGGACATAACATCAGCATCGAG
* * * * * *
81878877 TTGAGATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCGTATGA
1 TTGCGATCCCGTATAAGACCATGTCTGGGACATGGCATAGGCATCGTATGA
81878928 TATGTATGAG
Statistics
Matches: 120, Mismatches: 25, Indels: 4
0.81 0.17 0.03
Matches are distributed among these distances:
95 81 0.68
96 39 0.32
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.27
Consensus pattern (95 bp):
TTGCGATCCCGTATAAGACCATGTCTGGGACATGGCATAGGCATCGTATGAGATCCCATATAAGA
CCATATATGGGACATAACATCAGCATCGAG
Found at i:81881915 original size:31 final size:31
Alignment explanation
Indices: 81881880--81881940 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
81881870 TATTTTATTG
*
81881880 TTAATTTTTTTTATTATTTTA-AAGCCATTTT
1 TTAATTTTTATTATTATTTTAGAAG-CATTTT
81881911 TTAATTTTTATTATTATTTTAGAAGCATTT
1 TTAATTTTTATTATTATTTTAGAAGCATTT
81881941 GCTTGTTAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
31 25 0.89
32 3 0.11
ACGTcount: A:0.28, C:0.05, G:0.05, T:0.62
Consensus pattern (31 bp):
TTAATTTTTATTATTATTTTAGAAGCATTTT
Found at i:81890694 original size:14 final size:14
Alignment explanation
Indices: 81890675--81890701 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
81890665 AGTCTTACAT
81890675 GAAATCAGATACGC
1 GAAATCAGATACGC
81890689 GAAATCAGATACG
1 GAAATCAGATACG
81890702 ATGTCGATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.19, G:0.22, T:0.15
Consensus pattern (14 bp):
GAAATCAGATACGC
Found at i:81890719 original size:56 final size:55
Alignment explanation
Indices: 81890633--81890742 Score: 193
Period size: 56 Copynumber: 2.0 Consensus size: 55
81890623 GGTCTTACAT
81890633 GAAATCAGATACGATGCCGATGTCCCAGACATAGTCTTACATGAAATCAGATACGC
1 GAAATCAGATACGATGCCGATGTCCCAGACATAGTCTTACAT-AAATCAGATACGC
* *
81890689 GAAATCAGATACGATGTCGATGTCCCAGACATGGTCTTACATAAATCAGATACG
1 GAAATCAGATACGATGCCGATGTCCCAGACATAGTCTTACATAAATCAGATACG
81890743 ATGCTGATGT
Statistics
Matches: 52, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
55 12 0.23
56 40 0.77
ACGTcount: A:0.35, C:0.22, G:0.20, T:0.23
Consensus pattern (55 bp):
GAAATCAGATACGATGCCGATGTCCCAGACATAGTCTTACATAAATCAGATACGC
Found at i:81890752 original size:41 final size:42
Alignment explanation
Indices: 81890689--81890812 Score: 180
Period size: 41 Copynumber: 3.0 Consensus size: 42
81890679 TCAGATACGC
81890689 GAAATCAGATACGATG-TCGATGTCCCAGACATGGTCTTACAT
1 GAAATCAGATACGATGCT-GATGTCCCAGACATGGTCTTACAT
*
81890731 -AAATCAGATACGATGCTGATGTCCCAGACAAGGTCTTACAT
1 GAAATCAGATACGATGCTGATGTCCCAGACATGGTCTTACAT
* * **
81890772 GAAATCAAATACGATACCAATGTCCCAGACATGGTCTTACA
1 GAAATCAGATACGATGCTGATGTCCCAGACATGGTCTTACA
81890813 CGTAAATATC
Statistics
Matches: 74, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
41 38 0.51
42 36 0.49
ACGTcount: A:0.35, C:0.23, G:0.19, T:0.24
Consensus pattern (42 bp):
GAAATCAGATACGATGCTGATGTCCCAGACATGGTCTTACAT
Found at i:81890767 original size:97 final size:98
Alignment explanation
Indices: 81890590--81890784 Score: 306
Period size: 97 Copynumber: 2.0 Consensus size: 98
81890580 TGGTCTTACA
* * *
81890590 CGAAATTAGATACGATTCCGATGTCTCAGATATGGTCTTACATGAAATCAGATACGATGCCGATG
1 CGAAATCAGATACGATTCCGATGTCCCAGACATGGTCTTACATGAAATCAGATACGATGCCGATG
*
81890655 TCCCAGACATAGTCTTACATGAAATCAGATACG
66 TCCCAGACATAGTCTTACATGAAATCAAATACG
*
81890688 CGAAATCAGATACGATGT-CGATGTCCCAGACATGGTCTTACAT-AAATCAGATACGATGCTGAT
1 CGAAATCAGATACGAT-TCCGATGTCCCAGACATGGTCTTACATGAAATCAGATACGATGCCGAT
81890751 GTCCCAGACA-AGGTCTTACATGAAATCAAATACG
65 GTCCCAGACATA-GTCTTACATGAAATCAAATACG
81890785 ATACCAATGT
Statistics
Matches: 90, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
96 1 0.01
97 50 0.56
98 38 0.42
99 1 0.01
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.25
Consensus pattern (98 bp):
CGAAATCAGATACGATTCCGATGTCCCAGACATGGTCTTACATGAAATCAGATACGATGCCGATG
TCCCAGACATAGTCTTACATGAAATCAAATACG
Found at i:81890797 original size:42 final size:42
Alignment explanation
Indices: 81890443--81890812 Score: 384
Period size: 42 Copynumber: 8.5 Consensus size: 42
81890433 CAATGCTGAC
* * **
81890443 GTCCCAGACGTGGTCTTACATGTAATTCAG-TATCGATGCCTCT
1 GTCCCAGACATGGTCTTACATG-AAATCAGATA-CGATGCCGAT
* * *
81890486 GTCCCAAACAGGGTCTTACACGAAATCAGATACGATGCCGAT
1 GTCCCAGACATGGTCTTACATGAAATCAGATACGATGCCGAT
* * *
81890528 GTCCCAGACATGGTCTTACACGAAATCAAATATGATGCCGAT
1 GTCCCAGACATGGTCTTACATGAAATCAGATACGATGCCGAT
* * *
81890570 GTCCCAGACATGGTCTTACACGAAATTAGATACGATTCCGAT
1 GTCCCAGACATGGTCTTACATGAAATCAGATACGATGCCGAT
* *
81890612 GTCTCAGATATGGTCTTACATGAAATCAGATACGATGCCGAT
1 GTCCCAGACATGGTCTTACATGAAATCAGATACGATGCCGAT
* *
81890654 GTCCCAGACATAGTCTTACATGAAATCAGATACGCGAAATCAGATACGATGT
1 GTCCCAGACATGGTCTTACATGAAATCAGATA--CG--AT--G--CCGA--T
*
81890706 CGATGTCCCAGACATGGTCTTACAT-AAATCAGATACGATGCTGAT
1 ----GTCCCAGACATGGTCTTACATGAAATCAGATACGATGCCGAT
* * * *
81890751 GTCCCAGACAAGGTCTTACATGAAATCAAATACGATACCAAT
1 GTCCCAGACATGGTCTTACATGAAATCAGATACGATGCCGAT
81890793 GTCCCAGACATGGTCTTACA
1 GTCCCAGACATGGTCTTACA
81890813 CGTAAATATC
Statistics
Matches: 278, Mismatches: 33, Indels: 33
0.81 0.10 0.10
Matches are distributed among these distances:
41 20 0.07
42 191 0.69
43 20 0.07
44 2 0.01
45 1 0.00
46 2 0.01
47 2 0.01
48 1 0.00
49 1 0.00
50 3 0.01
51 2 0.01
52 1 0.00
53 2 0.01
55 10 0.04
56 20 0.07
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.25
Consensus pattern (42 bp):
GTCCCAGACATGGTCTTACATGAAATCAGATACGATGCCGAT
Found at i:81890799 original size:139 final size:140
Alignment explanation
Indices: 81890548--81890812 Score: 397
Period size: 139 Copynumber: 1.9 Consensus size: 140
81890538 TGGTCTTACA
* * *
81890548 CGAAATCAAATATGATGCCGATGTCCCAGACATGGTCTTACACGAAATTAGATACGATTCCGATG
1 CGAAATCAAATACGATGCCGATGTCCCAGACATGGTCTTACACGAAATCAGATACGATGCCGATG
* * * * * *
81890613 TCTCAGATATGGTCTTACATGAAATCAGATACGATGCCGATGTCCCAGACATAGTCTTACATGAA
66 TCCCAGACAAGGTCTTACATGAAATCAAATACGATACCAATGTCCCAGACATAGTCTTACATGAA
81890678 ATCAGATACG
131 ATCAGATACG
* * * *
81890688 CGAAATCAGATACGATGTCGATGTCCCAGACATGGTCTTACA-TAAATCAGATACGATGCTGATG
1 CGAAATCAAATACGATGCCGATGTCCCAGACATGGTCTTACACGAAATCAGATACGATGCCGATG
*
81890752 TCCCAGACAAGGTCTTACATGAAATCAAATACGATACCAATGTCCCAGACATGGTCTTACA
66 TCCCAGACAAGGTCTTACATGAAATCAAATACGATACCAATGTCCCAGACATAGTCTTACA
81890813 CGTAAATATC
Statistics
Matches: 111, Mismatches: 14, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
139 72 0.65
140 39 0.35
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.25
Consensus pattern (140 bp):
CGAAATCAAATACGATGCCGATGTCCCAGACATGGTCTTACACGAAATCAGATACGATGCCGATG
TCCCAGACAAGGTCTTACATGAAATCAAATACGATACCAATGTCCCAGACATAGTCTTACATGAA
ATCAGATACG
Found at i:81897383 original size:43 final size:42
Alignment explanation
Indices: 81897335--81897491 Score: 151
Period size: 42 Copynumber: 3.6 Consensus size: 42
81897325 GTCTTGGACG
* *
81897335 TGGTCTTACATGTAATTCAGTATCGATGCCTCTGTCCCAGACA
1 TGGTCTTACACGTAATTCAG-ATCGATGCCTATGTCCCAGACA
* *
81897378 TGGTCTTACACG-AAATCAGATACGATG-CTGATGTTCCAGACA
1 TGGTCTTACACGTAATTCAGAT-CGATGCCT-ATGTCCCAGACA
* *
81897420 TGGTCTTACACGTAAATATCAAATCGA-GCCCTATATCCCAGACA
1 TGGTCTTACACGT-AAT-TCAGATCGATG-CCTATGTCCCAGACA
*
81897464 CGGTCTTACACG-ATATCTCAGATCGATG
1 TGGTCTTACACGTA-AT-TCAGATCGATG
81897492 TTAATGTTCC
Statistics
Matches: 94, Mismatches: 11, Indels: 17
0.77 0.09 0.14
Matches are distributed among these distances:
41 4 0.04
42 34 0.36
43 22 0.23
44 27 0.29
45 7 0.07
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (42 bp):
TGGTCTTACACGTAATTCAGATCGATGCCTATGTCCCAGACA
Found at i:81915283 original size:43 final size:43
Alignment explanation
Indices: 81915236--81915331 Score: 158
Period size: 43 Copynumber: 2.2 Consensus size: 43
81915226 TATTGGCAGA
*
81915236 AAGTGTGCGATACAATTATAGCTT-TGGCTAATTAATTAGCTCT
1 AAGTGTGCGATACAATTATAGCTTCT-GCTAATTAATTAGCACT
*
81915279 AAGTGTGCGATACAATTATAGCTTCTGTTAATTAATTAGCACT
1 AAGTGTGCGATACAATTATAGCTTCTGCTAATTAATTAGCACT
81915322 AAGTGTGCGA
1 AAGTGTGCGA
81915332 GTTTATTGAA
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
43 49 0.98
44 1 0.02
ACGTcount: A:0.31, C:0.14, G:0.20, T:0.35
Consensus pattern (43 bp):
AAGTGTGCGATACAATTATAGCTTCTGCTAATTAATTAGCACT
Found at i:81916068 original size:26 final size:26
Alignment explanation
Indices: 81916039--81916146 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
81916029 TGGTACAAAT
81916039 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
*
81916065 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
* *
81916091 TGATAATGGGTTAGGTAAATGTTCTA
1 TGATAATGGGTTAGGTAAATATTCCA
* *
81916117 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
81916143 TGAT
1 TGAT
81916147 GGGCATTTCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.33, C:0.06, G:0.23, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATATTCCA
Found at i:81920778 original size:16 final size:16
Alignment explanation
Indices: 81920757--81920788 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
81920747 AATGGGTTTG
*
81920757 CAAAAACAAAGATTTT
1 CAAAAACAAAAATTTT
81920773 CAAAAACAAAAATTTT
1 CAAAAACAAAAATTTT
81920789 ATAAAGAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.12, G:0.03, T:0.25
Consensus pattern (16 bp):
CAAAAACAAAAATTTT
Found at i:81925039 original size:27 final size:25
Alignment explanation
Indices: 81924996--81925103 Score: 114
Period size: 27 Copynumber: 4.2 Consensus size: 25
81924986 TGGTACAAAT
81924996 TGATAATGGGTTAAGGTAAATGTTCCA
1 TGATAAT-GGTT-AGGTAAATGTTCCA
*
81925023 TGATAATGGGATTAGGTAATATATTCCA
1 TGATAAT-GG-TTAGGTAA-ATGTTCCA
*
81925051 TGAATAATGGTTAGGTAAATGTTTC-
1 TG-ATAATGGTTAGGTAAATGTTCCA
81925076 T-ATGAA-GGTTAGGTAAATGTTCCA
1 TGAT-AATGGTTAGGTAAATGTTCCA
81925100 TGAT
1 TGAT
81925104 GGGCATTTCA
Statistics
Matches: 71, Mismatches: 4, Indels: 14
0.80 0.04 0.16
Matches are distributed among these distances:
23 18 0.25
24 3 0.04
25 3 0.04
26 5 0.07
27 24 0.34
28 13 0.18
29 5 0.07
ACGTcount: A:0.33, C:0.06, G:0.24, T:0.36
Consensus pattern (25 bp):
TGATAATGGTTAGGTAAATGTTCCA
Found at i:81932749 original size:31 final size:31
Alignment explanation
Indices: 81932711--81932963 Score: 265
Period size: 31 Copynumber: 8.1 Consensus size: 31
81932701 TAGCATCCCC
* *
81932711 AGAGATAGCCCGTTGGGACAGTAAACATAGA
1 AGAGATAGTCCGCTGGGACAGTAAACATAGA
** * * *
81932742 AGAGATAGTCTACTGGGACAGTAAATACATA
1 AGAGATAGTCCGCTGGGACAGTAAACATAGA
* *
81932773 AGAGATAATCCGCTGGGATAGTAAACATAGA
1 AGAGATAGTCCGCTGGGACAGTAAACATAGA
* * *
81932804 AGAGATAGTCCACTGGGACGGTAAACACT-TA
1 AGAGATAGTCCGCTGGGACAGTAAACA-TAGA
* *
81932835 AGAGATAATCCGCTGGGATAGTAAACATAGA
1 AGAGATAGTCCGCTGGGACAGTAAACATAGA
* *
81932866 AGAGATAGTCCACTGGGACAGTAAAGATAGA
1 AGAGATAGTCCGCTGGGACAGTAAACATAGA
** * * *
81932897 ACTGATAGTCTGTTGGGATAGTAAACATAGA
1 AGAGATAGTCCGCTGGGACAGTAAACATAGA
* * *
81932928 AGAGATAGCCCGTTGGGACCGTAAACATAGA
1 AGAGATAGTCCGCTGGGACAGTAAACATAGA
81932959 TAGAG
1 -AGAG
81932964 TCCATCGGGA
Statistics
Matches: 178, Mismatches: 41, Indels: 5
0.79 0.18 0.02
Matches are distributed among these distances:
30 1 0.01
31 172 0.97
32 5 0.03
ACGTcount: A:0.39, C:0.14, G:0.27, T:0.20
Consensus pattern (31 bp):
AGAGATAGTCCGCTGGGACAGTAAACATAGA
Found at i:81932808 original size:62 final size:62
Alignment explanation
Indices: 81932724--81932954 Score: 309
Period size: 62 Copynumber: 3.7 Consensus size: 62
81932714 GATAGCCCGT
* * *
81932724 TGGGACAGTAAACATAGAAGAGATAGTCTACTGGGACAGTAAATACATAAGAGATAATCCGC
1 TGGGATAGTAAACATAGAAGAGATAGTCCACTGGGACAGTAAACACATAAGAGATAATCCGC
* *
81932786 TGGGATAGTAAACATAGAAGAGATAGTCCACTGGGACGGTAAACACTTAAGAGATAATCCGC
1 TGGGATAGTAAACATAGAAGAGATAGTCCACTGGGACAGTAAACACATAAGAGATAATCCGC
* * * ** * * *
81932848 TGGGATAGTAAACATAGAAGAGATAGTCCACTGGGACAGTAAAGATAGAACTGATAGTCTGT
1 TGGGATAGTAAACATAGAAGAGATAGTCCACTGGGACAGTAAACACATAAGAGATAATCCGC
* ** *
81932910 TGGGATAGTAAACATAGAAGAGATAGCCCGTTGGGACCGTAAACA
1 TGGGATAGTAAACATAGAAGAGATAGTCCACTGGGACAGTAAACA
81932955 TAGATAGAGT
Statistics
Matches: 149, Mismatches: 20, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
62 149 1.00
ACGTcount: A:0.39, C:0.14, G:0.26, T:0.20
Consensus pattern (62 bp):
TGGGATAGTAAACATAGAAGAGATAGTCCACTGGGACAGTAAACACATAAGAGATAATCCGC
Found at i:81935870 original size:41 final size:41
Alignment explanation
Indices: 81935775--81935860 Score: 118
Period size: 41 Copynumber: 2.1 Consensus size: 41
81935765 GTATCAATTA
*
81935775 CCTAATTCAATACACTGGCGCGAAGCATACTAGGCCCAAAG
1 CCTAATTCAATACACTGGCGCGAAGCATACTAGGCACAAAG
* * * * *
81935816 CCTAATTCAATACATTGGCTCGAAGCTTGCTAGGCATAAAG
1 CCTAATTCAATACACTGGCGCGAAGCATACTAGGCACAAAG
81935857 CCTA
1 CCTA
81935861 GCTTAATACA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.33, C:0.27, G:0.19, T:0.22
Consensus pattern (41 bp):
CCTAATTCAATACACTGGCGCGAAGCATACTAGGCACAAAG
Found at i:81937447 original size:23 final size:23
Alignment explanation
Indices: 81937421--81937484 Score: 92
Period size: 23 Copynumber: 2.8 Consensus size: 23
81937411 GGACTCACCA
*
81937421 CAGCTCATTGGAGCTTACCATTT
1 CAGCTCATTAGAGCTTACCATTT
* *
81937444 CAGCTCATTTGAGCTTACCGTTT
1 CAGCTCATTAGAGCTTACCATTT
*
81937467 CAGCTCAATAGAGCTTAC
1 CAGCTCATTAGAGCTTAC
81937485 TGTTCAGCTA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.23, C:0.27, G:0.17, T:0.33
Consensus pattern (23 bp):
CAGCTCATTAGAGCTTACCATTT
Found at i:81937493 original size:22 final size:23
Alignment explanation
Indices: 81937421--81937493 Score: 85
Period size: 23 Copynumber: 3.2 Consensus size: 23
81937411 GGACTCACCA
* * *
81937421 CAGCTCATTGGAGCTTACCATTT
1 CAGCTCAATAGAGCTTACCGTTT
* *
81937444 CAGCTCATTTGAGCTTACCGTTT
1 CAGCTCAATAGAGCTTACCGTTT
*
81937467 CAGCTCAATAGAGCTTACTG-TT
1 CAGCTCAATAGAGCTTACCGTTT
81937489 CAGCT
1 CAGCT
81937494 AGAAAGAGCT
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
22 7 0.16
23 38 0.84
ACGTcount: A:0.22, C:0.26, G:0.18, T:0.34
Consensus pattern (23 bp):
CAGCTCAATAGAGCTTACCGTTT
Found at i:81937501 original size:22 final size:23
Alignment explanation
Indices: 81937431--81937505 Score: 73
Period size: 23 Copynumber: 3.3 Consensus size: 23
81937421 CAGCTCATTG
* ***
81937431 GAGCTTACCATTTCAGCTCATTT
1 GAGCTTACCGTTTCAGCTCAAAA
*
81937454 GAGCTTACCGTTTCAGCTCAATA
1 GAGCTTACCGTTTCAGCTCAAAA
*
81937477 GAGCTTACTG-TTCAGCT-AGAAA
1 GAGCTTACCGTTTCAGCTCA-AAA
81937499 GAGCTTA
1 GAGCTTA
81937506 TCGACCATGA
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
21 1 0.02
22 16 0.35
23 29 0.63
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.32
Consensus pattern (23 bp):
GAGCTTACCGTTTCAGCTCAAAA
Found at i:81938439 original size:43 final size:43
Alignment explanation
Indices: 81938391--81938480 Score: 135
Period size: 43 Copynumber: 2.1 Consensus size: 43
81938381 CACTGGCGTG
*
81938391 TGTCTCAGCTATGGGTGACACACAGTCATGTTACACGGCCGTA
1 TGTCTCAGCCATGGGTGACACACAGTCATGTTACACGGCCGTA
* * * *
81938434 TGTCTCAGCCGTGTGTGACACACGGTCATGTTACACGGCCGTG
1 TGTCTCAGCCATGGGTGACACACAGTCATGTTACACGGCCGTA
81938477 TGTC
1 TGTC
81938481 CCTTGGGGTA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.19, C:0.27, G:0.28, T:0.27
Consensus pattern (43 bp):
TGTCTCAGCCATGGGTGACACACAGTCATGTTACACGGCCGTA
Found at i:81940348 original size:40 final size:40
Alignment explanation
Indices: 81940274--81940418 Score: 186
Period size: 40 Copynumber: 3.6 Consensus size: 40
81940264 AACCCAAGTA
* * *
81940274 CCTTCAGGATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATG
* *
81940313 CCTTTGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATG
*
81940353 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTA---GCACAAATG
81940396 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
81940419 CATCCGAATA
Statistics
Matches: 91, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
39 11 0.12
40 48 0.53
41 1 0.01
43 31 0.34
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATG
Found at i:81946758 original size:53 final size:55
Alignment explanation
Indices: 81946690--81946896 Score: 179
Period size: 53 Copynumber: 3.8 Consensus size: 55
81946680 TTCCTTTTTA
* *
81946690 AACTTACCATTGCCATGTATTGACATGGTCTTACGTGATATCCTTGCCTTAT-G-
1 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATAGT
* * ** *
81946743 AACTCACCATTGCCAT-TCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAGT
1 AACTTACCATTGCCATGT-CTTGACATGGTCTTACATGATATCCTTGCCTTATAGT
** * * * * * *
81946798 AGTTTATCAATGCAATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTA-A
1 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATAGT
* * * * * * *
81946852 AAATTACCAATGCCATGCCTTGGCATGGTATTACTTGGTATCCTT
1 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGATATCCTT
81946897 AAACCCTAAT
Statistics
Matches: 120, Mismatches: 30, Indels: 7
0.76 0.19 0.04
Matches are distributed among these distances:
52 1 0.01
53 43 0.36
54 36 0.30
55 39 0.32
56 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.38
Consensus pattern (55 bp):
AACTTACCATTGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATAGT
Found at i:81948602 original size:27 final size:27
Alignment explanation
Indices: 81948583--81948654 Score: 117
Period size: 27 Copynumber: 2.7 Consensus size: 27
81948573 GTAGGCTAAC
81948583 ATTACTGAAATACCCTTGTAGGGTAGA
1 ATTACTGAAATACCCTTGTAGGGTAGA
*
81948610 ATTACTGAAATGCCCTTGTAGGGTAGA
1 ATTACTGAAATACCCTTGTAGGGTAGA
**
81948637 ATTACCAAAATACCCTTG
1 ATTACTGAAATACCCTTG
81948655 GTTTATAAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.29
Consensus pattern (27 bp):
ATTACTGAAATACCCTTGTAGGGTAGA
Found at i:81948666 original size:27 final size:27
Alignment explanation
Indices: 81948636--81948813 Score: 171
Period size: 27 Copynumber: 6.6 Consensus size: 27
81948626 TGTAGGGTAG
* *
81948636 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCCTGGTTTGTAA
81948663 AATTACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCCTGGTTTGTAA
*
81948690 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTGGTTTGTAA
* * * *
81948717 AATTACCAAGATACCTCTGATTTGTGA
1 AATTACCAAAATACCCCTGGTTTGTAA
** **
81948744 AATTACTGAAATA-CCCTCGACTTGTAA
1 AATTACCAAAATACCCCT-GGTTTGTAA
** ***
81948771 AATTACTGAAATA-CCCTCAACTTGTAA
1 AATTACCAAAATACCCCT-GGTTTGTAA
*
81948798 AATTACCAAAGTACCC
1 AATTACCAAAATACCC
81948814 TCGATTTACA
Statistics
Matches: 131, Mismatches: 18, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
26 3 0.02
27 126 0.96
28 2 0.02
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGGTTTGTAA
Found at i:81948721 original size:81 final size:82
Alignment explanation
Indices: 81948636--81948821 Score: 202
Period size: 81 Copynumber: 2.3 Consensus size: 82
81948626 TGTAGGGTAG
* **
81948636 AATTACCAAAATACCCT-TGGTTTATAAAATTACCAAAATACCC-CTGGTTTGTAAAATTACCAA
1 AATTACCAAAATACCCTCTGATTTATAAAATTACCAAAATACCCTC-GACTTGTAAAATTACCAA
**
81948699 AATACCC-CTAGTTTGTAA
65 AATACCCTC-AACTTGTAA
* * * ** **
81948717 AATTACCAAGATA-CCTCTGATTTGTGAAATTACTGAAATACCCTCGACTTGTAAAATTACTGAA
1 AATTACCAAAATACCCTCTGATTTATAAAATTACCAAAATACCCTCGACTTGTAAAATTACCAAA
81948781 ATACCCTCAACTTGTAA
66 ATACCCTCAACTTGTAA
*
81948798 AATTACCAAAGTACCCTC-GATTTA
1 AATTACCAAAATACCCTCTGATTTA
81948822 CAGAATTATT
Statistics
Matches: 86, Mismatches: 15, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
80 3 0.03
81 77 0.90
82 6 0.07
ACGTcount: A:0.38, C:0.22, G:0.10, T:0.31
Consensus pattern (82 bp):
AATTACCAAAATACCCTCTGATTTATAAAATTACCAAAATACCCTCGACTTGTAAAATTACCAAA
ATACCCTCAACTTGTAA
Found at i:81948828 original size:27 final size:27
Alignment explanation
Indices: 81948809--81949242 Score: 495
Period size: 27 Copynumber: 16.2 Consensus size: 27
81948799 ATTACCAAAG
* *
81948809 TACCCTCGATTTACAGAATTATTATTT
1 TACCCTCGATTTACAAAATTACTATTT
*
81948836 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
* * *
81948863 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
**
81948890 TACCCTTAATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
81948917 TACCCTCAATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
*
81948944 TACCCTCGATTTACAAAATTA-TCGTTT
1 TACCCTCGATTTACAAAATTACT-ATTT
*
81948971 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* * *
81948998 TACCCTCAATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
*
81949025 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
81949052 TACCCTCAATTTAAAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
*
81949079 TACCCTCAATTTACAAAATTA-TCATTT
1 TACCCTCGATTTACAAAATTACT-ATTT
81949106 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* * **
81949133 TATCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTATTT
** * *
81949160 TA---TTAATTTA-AAGAATTAATGTTT
1 TACCCTCGATTTACAA-AATTACTATTT
* * *
81949184 TACCCTTGATTTATAGAATTACCT-TTT
1 TACCCTCGATTTACAAAATTA-CTATTT
* *
81949211 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
81949238 TACCC
1 TACCC
81949243 CTAGGGTGTT
Statistics
Matches: 355, Mismatches: 41, Indels: 22
0.85 0.10 0.05
Matches are distributed among these distances:
23 1 0.00
24 17 0.05
26 3 0.01
27 330 0.93
28 4 0.01
ACGTcount: A:0.33, C:0.20, G:0.05, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTATTT
Found at i:81949773 original size:6 final size:6
Alignment explanation
Indices: 81949738--81949846 Score: 62
Period size: 6 Copynumber: 17.7 Consensus size: 6
81949728 ATTCACATTT
* * * * *
81949738 TGATTT TGATTC TGTTATC TGATAC TGATTC TGATTC TAATTC TG-TCACC
1 TGATTC TGATTC TGAT-TC TGATTC TGATTC TGATTC TGATTC TGAT--TC
* * * *
81949788 TAATTC TGATTC TG-TCACC TGATTC TGATTC TGATTC TCATTT TGATTC
1 TGATTC TGATTC TGAT--TC TGATTC TGATTC TGATTC TGATTC TGATTC
81949837 T-AGTTC TGAT
1 TGA-TTC TGAT
81949847 AATGTTTCTT
Statistics
Matches: 77, Mismatches: 17, Indels: 18
0.69 0.15 0.16
Matches are distributed among these distances:
5 3 0.04
6 61 0.79
7 11 0.14
8 2 0.03
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.49
Consensus pattern (6 bp):
TGATTC
Found at i:81949799 original size:19 final size:19
Alignment explanation
Indices: 81949771--81949820 Score: 82
Period size: 19 Copynumber: 2.6 Consensus size: 19
81949761 ACTGATTCTG
*
81949771 ATTCTAATTCTGTCACCTA
1 ATTCTGATTCTGTCACCTA
*
81949790 ATTCTGATTCTGTCACCTG
1 ATTCTGATTCTGTCACCTA
81949809 ATTCTGATTCTG
1 ATTCTGATTCTG
81949821 ATTCTCATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.20, C:0.24, G:0.12, T:0.44
Consensus pattern (19 bp):
ATTCTGATTCTGTCACCTA
Found at i:81949818 original size:25 final size:25
Alignment explanation
Indices: 81949762--81949825 Score: 77
Period size: 19 Copynumber: 2.8 Consensus size: 25
81949752 TTATCTGATA
*
81949762 CTGATTCTGATTCTAATTCTGTCAC
1 CTGATTCTGATTCTGATTCTGTCAC
81949787 CT-A-----ATTCTGATTCTGTCAC
1 CTGATTCTGATTCTGATTCTGTCAC
81949806 CTGATTCTGATTCTGATTCT
1 CTGATTCTGATTCTGATTCT
81949826 CATTTTGATT
Statistics
Matches: 32, Mismatches: 1, Indels: 12
0.71 0.02 0.27
Matches are distributed among these distances:
19 17 0.53
20 1 0.03
24 1 0.03
25 13 0.41
ACGTcount: A:0.19, C:0.23, G:0.12, T:0.45
Consensus pattern (25 bp):
CTGATTCTGATTCTGATTCTGTCAC
Found at i:81954607 original size:13 final size:13
Alignment explanation
Indices: 81954591--81954618 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
81954581 TTAGTTAAAT
81954591 ATGCATGTTACTG
1 ATGCATGTTACTG
81954604 ATGCATGTTACTG
1 ATGCATGTTACTG
81954617 AT
1 AT
81954619 CATATTAGAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.25, C:0.14, G:0.21, T:0.39
Consensus pattern (13 bp):
ATGCATGTTACTG
Found at i:81958374 original size:43 final size:41
Alignment explanation
Indices: 81958327--81958478 Score: 117
Period size: 43 Copynumber: 3.6 Consensus size: 41
81958317 ATATGTATTC
*
81958327 GTGTAAGACCATATCTGGGATATGGAATCAAAATGAGATTTA
1 GTGTAAGACCATATCTAGGATATGGAATC-AAATGAGATTTA
* * * ** * *
81958369 GGTGTAAGACCATGTCTAGGACATCGACATCGTATGAGAATTC
1 -GTGTAAGACCATATCTAGGATATGGA-ATCAAATGAGATTTA
* * * * * *
81958412 GTGTAAGACCATAGCTGGGCTATTGGCATTGAAATGAGATCCTA
1 GTGTAAGACCATATCTAGGATA-TGG-AATCAAATGAGAT-TTA
81958456 -TGTAAGACCATATCTAGGATATG
1 GTGTAAGACCATATCTAGGATATG
81958479 ACACTGGCGT
Statistics
Matches: 81, Mismatches: 24, Indels: 9
0.71 0.21 0.08
Matches are distributed among these distances:
42 19 0.23
43 57 0.70
44 5 0.06
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (41 bp):
GTGTAAGACCATATCTAGGATATGGAATCAAATGAGATTTA
Found at i:81958430 original size:85 final size:86
Alignment explanation
Indices: 81958275--81958474 Score: 214
Period size: 85 Copynumber: 2.3 Consensus size: 86
81958265 CAACATCGAT
* * * * *
81958275 ATGAGACTCCTA--TAAGACCATGGCTAGGCCATTGGCATCGGTATATGTATTCGTGTAAGACCA
1 ATGAGA-TCCTATGTAAGACCATGTCTAGGACATCGACATCGGTATATGAATTCGTGTAAGACCA
*
81958338 TATCTGGGATA-TGGAATCAAA
65 TAGCTGGGATATTGGAATCAAA
*
81958359 ATGAGAT-TTAGGTGTAAGACCATGTCTAGGACATCGACATC-GTATGA-GAATTCGTGTAAGAC
1 ATGAGATCCTA--TGTAAGACCATGTCTAGGACATCGACATCGGTAT-ATGAATTCGTGTAAGAC
* * **
81958421 CATAGCTGGGCTATTGGCATTGAA
63 CATAGCTGGGATATTGGAATCAAA
*
81958445 ATGAGATCCTATGTAAGACCATATCTAGGA
1 ATGAGATCCTATGTAAGACCATGTCTAGGA
81958475 TATGACACTG
Statistics
Matches: 96, Mismatches: 13, Indels: 13
0.79 0.11 0.11
Matches are distributed among these distances:
82 2 0.02
83 1 0.01
84 6 0.06
85 47 0.49
86 38 0.40
87 2 0.02
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.28
Consensus pattern (86 bp):
ATGAGATCCTATGTAAGACCATGTCTAGGACATCGACATCGGTATATGAATTCGTGTAAGACCAT
AGCTGGGATATTGGAATCAAA
Found at i:81980269 original size:43 final size:43
Alignment explanation
Indices: 81980197--81980282 Score: 109
Period size: 43 Copynumber: 2.0 Consensus size: 43
81980187 GTTACATGAA
* * *
81980197 TCGCATACATGATGAACTTGGACCACTCAACGAGCTCAGATGC
1 TCGCATACATAATGAACTCGAACCACTCAACGAGCTCAGATGC
* * * *
81980240 TCGCATCCATAATGAACTCGAACCTCTCAATGAGCTCGGATGC
1 TCGCATACATAATGAACTCGAACCACTCAACGAGCTCAGATGC
81980283 CACATAAATC
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (43 bp):
TCGCATACATAATGAACTCGAACCACTCAACGAGCTCAGATGC
Found at i:81987074 original size:17 final size:17
Alignment explanation
Indices: 81987052--81987086 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
81987042 TATATGGGAC
81987052 TACAGTCATGTTCGATA
1 TACAGTCATGTTCGATA
*
81987069 TACAGTCATGTTTGATA
1 TACAGTCATGTTCGATA
81987086 T
1 T
81987087 CACATCGGCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.14, G:0.17, T:0.40
Consensus pattern (17 bp):
TACAGTCATGTTCGATA
Found at i:81987118 original size:21 final size:21
Alignment explanation
Indices: 81987094--81987155 Score: 58
Period size: 21 Copynumber: 3.0 Consensus size: 21
81987084 TATCACATCG
81987094 GCTATATGTGGCACTTAGTGT
1 GCTATATGTGGCACTTAGTGT
* ** *
81987115 GCTATATGAGATAGCTT--CG-
1 GCTATATGTGGCA-CTTAGTGT
81987134 GCTATATGTGGCACTTAGTGT
1 GCTATATGTGGCACTTAGTGT
81987155 G
1 G
81987156 GGAGATGAGA
Statistics
Matches: 29, Mismatches: 8, Indels: 8
0.64 0.18 0.18
Matches are distributed among these distances:
18 3 0.10
19 10 0.34
20 2 0.07
21 11 0.38
22 3 0.10
ACGTcount: A:0.21, C:0.15, G:0.29, T:0.35
Consensus pattern (21 bp):
GCTATATGTGGCACTTAGTGT
Found at i:81987146 original size:40 final size:40
Alignment explanation
Indices: 81987091--81987275 Score: 210
Period size: 40 Copynumber: 4.6 Consensus size: 40
81987081 TGATATCACA
*
81987091 TCGGCTATATGTGGCACTTAGTGTGCTATATGAGATAGCT
1 TCGGCTATATGTGGCACTTAGTGTGCGATATGAGATAGCT
* *
81987131 TCGGCTATATGTGGCACTTAGTGTGGGAGATGAGATAGCT
1 TCGGCTATATGTGGCACTTAGTGTGCGATATGAGATAGCT
* * * * *
81987171 TCGACTATATGTGGCACTTAATGTGCGATTTTATATAGCT
1 TCGGCTATATGTGGCACTTAGTGTGCGATATGAGATAGCT
* ** * *
81987211 TCAGCTATATAAGGCACTTAGTGTGCGATTTGAGATAGTT
1 TCGGCTATATGTGGCACTTAGTGTGCGATATGAGATAGCT
* * *
81987251 TTGGCTATGTACT-GCACTTAGTGTG
1 TCGGCTATAT-GTGGCACTTAGTGTG
81987276 TGAAATATCA
Statistics
Matches: 121, Mismatches: 23, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
40 121 1.00
ACGTcount: A:0.23, C:0.14, G:0.27, T:0.36
Consensus pattern (40 bp):
TCGGCTATATGTGGCACTTAGTGTGCGATATGAGATAGCT
Found at i:81989691 original size:94 final size:94
Alignment explanation
Indices: 81989526--81989729 Score: 279
Period size: 94 Copynumber: 2.2 Consensus size: 94
81989516 CCACAGATCC
* * * *
81989526 TATACCCCTGAAATTGCAGTGGGTCAGGTTGAAGTCACCATAGCGAATCTTATCTCCTTGAAGTT
1 TATACCTCTGAAGTTGCAATGGGTCAGATTGAAGTCACCATAGCGAATCTTATCTCCTTGAAGTT
* *
81989591 GTAGTGGAG-TAGATTGAAGCTACAAATCA
66 GCAGTGGAGCAAGA-TGAAGCTACAAATCA
* *
81989620 TATACCTCTGAAGTTGCAATTGGTCAGATTGAA-TTAGCCATAGCGAATCTTATCTCCTTGAAGT
1 TATACCTCTGAAGTTGCAATGGGTCAGATTGAAGTCA-CCATAGCGAATCTTATCTCCTTGAAGT
*
81989684 TGCAGTGGAGCAAGATGAAGCTACAAATCC
65 TGCAGTGGAGCAAGATGAAGCTACAAATCA
81989714 TATATCCT-TGAAGTTG
1 TATA-CCTCTGAAGTTG
81989730 TAGTGGATCG
Statistics
Matches: 98, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
93 2 0.02
94 90 0.92
95 6 0.06
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (94 bp):
TATACCTCTGAAGTTGCAATGGGTCAGATTGAAGTCACCATAGCGAATCTTATCTCCTTGAAGTT
GCAGTGGAGCAAGATGAAGCTACAAATCA
Found at i:81989747 original size:44 final size:43
Alignment explanation
Indices: 81989665--81989753 Score: 106
Period size: 44 Copynumber: 2.0 Consensus size: 43
81989655 AGCCATAGCG
* * * *
81989665 AATCTTATCTCCTTGAAGTTGCAGTGGAGCAAGATGAAGCTACA
1 AATCTTATATCCTTGAAGTTGTAGTGGATCAA-TTGAAGCTACA
* *
81989709 AATCCTATATCCTTGAAGTTGTAGTGGATCGAATTGAAGCAACA
1 AATCTTATATCCTTGAAGTTGTAGTGGATC-AATTGAAGCTACA
81989753 A
1 A
81989754 TTTCTGTACT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
44 36 0.95
45 2 0.05
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (43 bp):
AATCTTATATCCTTGAAGTTGTAGTGGATCAATTGAAGCTACA
Found at i:81989869 original size:44 final size:43
Alignment explanation
Indices: 81989806--81989926 Score: 136
Period size: 44 Copynumber: 2.8 Consensus size: 43
81989796 AATGGCGAAT
* * * * *
81989806 GATGAAGCTATGAGTCCTATATCTCTGAAGTTGCAGTAGAGCA
1 GATGAAGCTACGAATCCTATATCCCTAAAGTTGCAATAGAGCA
*
81989849 GGATGAAGCTACGAATCCTATATCCCTAAAGTTGCAATAGATCA
1 -GATGAAGCTACGAATCCTATATCCCTAAAGTTGCAATAGAGCA
* *
81989893 GATTAAAGCTAC-AATTCCTATACCCCTAAAGTTG
1 GA-TGAAGCTACGAA-TCCTATATCCCTAAAGTTG
81989927 TAGTGGGTCA
Statistics
Matches: 67, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
43 4 0.06
44 63 0.94
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.27
Consensus pattern (43 bp):
GATGAAGCTACGAATCCTATATCCCTAAAGTTGCAATAGAGCA
Found at i:81990078 original size:94 final size:94
Alignment explanation
Indices: 81989862--81990078 Score: 218
Period size: 94 Copynumber: 2.3 Consensus size: 94
81989852 TGAAGCTACG
* * * * * * *
81989862 AATCCTATATCCCTAAAGTTGCAATAGATCAGATTAAAGCTACAATTCCTATACCCCTAAAGTTG
1 AATCTTATCTCCCTAAAGCTACAATGGAGCAGATTAAAGCTACAATTCCTATACCCCTAAAGTTA
* * * * **
81989927 TAGTGGGTCAGATTGAATCTACAATGGTG
66 AAATGGGTCAGAATGAAACTACAATGGCA
* * * * * *
81989956 AATCTTATCTCCCTAAAGCTATAATGGAGCAGATTGAAGCTACAATTCTTATATCTCTAAATTTA
1 AATCTTATCTCCCTAAAGCTACAATGGAGCAGATTAAAGCTACAATTCCTATACCCCTAAAGTTA
*
81990021 AAATGGGTCAGAATGAAACTACTATGGCA
66 AAATGGGTCAGAATGAAACTACAATGGCA
* * * *
81990050 AATCTTATCTCTCTGAAGTTACAGTGGAG
1 AATCTTATCTCCCTAAAGCTACAATGGAG
81990079 TAAGATGAAT
Statistics
Matches: 98, Mismatches: 25, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
94 98 1.00
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.31
Consensus pattern (94 bp):
AATCTTATCTCCCTAAAGCTACAATGGAGCAGATTAAAGCTACAATTCCTATACCCCTAAAGTTA
AAATGGGTCAGAATGAAACTACAATGGCA
Found at i:81990228 original size:228 final size:228
Alignment explanation
Indices: 81989830--81990359 Score: 557
Period size: 228 Copynumber: 2.3 Consensus size: 228
81989820 TCCTATATCT
* * * * * * * * * *
81989830 CTGAAGTTGCAGTAGAGCAGGATGAAGCTACGAATCCTATATCCCTAAAGTTGCAATAGATC-AG
1 CTGAAGTTACAGTGGAGCAAGATGAAGCTACAAATCATACACCCCTGAAGTTGCAGTGGATCGA-
* * * * * *
81989894 ATTAAAGCTACAATTCCTATACCCCTAAAGTTGTAGTGGGTCAGATTGAATCTACAATGGTGAAT
65 ATTGAAGCTGCAAATCCTATACCCCT----TGGCAGTGGGTCAGATTGAATCTACAATAGTGAAT
* * * * *
81989959 CTTATCTCCCTAAAGCTATAATGGAGCAGATTGAAGCTACAATTCTTATA-TCTCTAAATTTAAA
126 CTTATCTCCCTAAAGCTACAATGGAGAAGATTGAAGCTACAATTCCTATACCCT-TAAAGTTAAA
* *
81990023 ATGGGTCAGAATGAAACTACTATGGCAAATCTTATCTCT
190 ATGGGTCAGAATGAAACTACAATGGCAAATCTTATCTCC
* * * * *
81990062 CTGAAGTTACAGTGGAGTAAGATGAATCTAGAAATCATACATCCCTGAAGTTGTAGTGGATCGAA
1 CTGAAGTTACAGTGGAGCAAGATGAAGCTACAAATCATACACCCCTGAAGTTGCAGTGGATCGAA
*
81990127 TTGAAGCTGCAAATCCTATACCCCTTGGCAGTGGGTC-GAATTGAAGT-TACCATAGTGAATCTT
66 TTGAAGCTGCAAATCCTATACCCCTTGGCAGTGGGTCAG-ATTGAA-TCTACAATAGTGAATCTT
* * * * *
81990190 ATCTCCCTAAAGCTGCAATGGAGTAAGA-TGCAGCTACAATTCCTATACCCTTGAAGTTACAGTG
129 ATCTCCCTAAAGCTACAATGGAG-AAGATTGAAGCTACAATTCCTATACCCTTAAAGTTAAAATG
* * * *
81990254 GGTTAGAATGATACTACAATGGCGAATCTTATTTCC
193 GGTCAGAATGAAACTACAATGGCAAATCTTATCTCC
* * * * *
81990290 CTGAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTCGGA
1 CTGAAGTTACAGTGGAGCAAGATGAAGCTACAAATCATACACCCCTGAAGTTGCAGTGGATCGAA
81990355 TTGAA
66 TTGAA
81990360 TCTACCATAG
Statistics
Matches: 247, Mismatches: 46, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
227 1 0.00
228 167 0.68
229 6 0.02
232 72 0.29
233 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.28
Consensus pattern (228 bp):
CTGAAGTTACAGTGGAGCAAGATGAAGCTACAAATCATACACCCCTGAAGTTGCAGTGGATCGAA
TTGAAGCTGCAAATCCTATACCCCTTGGCAGTGGGTCAGATTGAATCTACAATAGTGAATCTTAT
CTCCCTAAAGCTACAATGGAGAAGATTGAAGCTACAATTCCTATACCCTTAAAGTTAAAATGGGT
CAGAATGAAACTACAATGGCAAATCTTATCTCC
Found at i:81990416 original size:188 final size:188
Alignment explanation
Indices: 81990103--81990547 Score: 471
Period size: 188 Copynumber: 2.4 Consensus size: 188
81990093 AAATCATACA
* * * *
81990103 TCCCTGAAGTTGTAGTGGATCGAA-TTGAAGCTGCAAATCCTATACCCCT----TGGCAGTGGGT
1 TCCCTGAAGTTGTAGTGGAGC-AAGATGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGT
* * * *
81990163 CGAATTGAAGTTACCATAGTGAATCTTATCTCCCTAAAGCTGCAATGGAGTAAGATGCAGCTACA
65 CGGATTGAAGTTACCATAGCGAATCTTATCTACCTAAAGCTGCAATGGAGTAAGATGAAGCTACA
* * * * *
81990228 ATTCCTATACCCTTGAAGTTACAGTGGGTTAGAA-TG-ATACTACAATGGCGAATCTTATT
130 AATCCTATACCCCTGAAGTTACAGTGGGTCA-AATTGAAT-CTACAATAGCGAATCTTATC
*
81990287 TCCCTGAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTC
1 TCCCTGAAGTTGTAGTGGAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTC
* * * *
81990352 GGATTGAA-TCTACCATAGCGAATCTTATCTACCTGAAA-TTGTAGTGGAG-CAGATTGAAGCTA
66 GGATTGAAGT-TACCATAGCGAATCTTATCTACCT-AAAGCTGCAATGGAGTAAGA-TGAAGCTA
* * * * *
81990414 CAAATCCTATACCCCTGAAGTTGCAGTTGGTCAAATTGAATCTACTATAGTGAATTTTATC
128 CAAATCCTATACCCCTGAAGTTACAGTGGGTCAAATTGAATCTACAATAGCGAATCTTATC
* * ** * * *
81990475 TCCCTGATGTTGTAGTGTAG-AAGATTGAAGCTACAAATCCTATACCATTGAAGTTACGGTGGAT
1 TCCCTGAAGTTGTAGTGGAGCAAGA-TGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGT
*
81990539 TGGATTGAA
65 CGGATTGAA
81990548 ATTAAAATAA
Statistics
Matches: 218, Mismatches: 32, Indels: 18
0.81 0.12 0.07
Matches are distributed among these distances:
183 2 0.01
184 42 0.19
187 10 0.05
188 159 0.73
189 5 0.02
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (188 bp):
TCCCTGAAGTTGTAGTGGAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTC
GGATTGAAGTTACCATAGCGAATCTTATCTACCTAAAGCTGCAATGGAGTAAGATGAAGCTACAA
ATCCTATACCCCTGAAGTTACAGTGGGTCAAATTGAATCTACAATAGCGAATCTTATC
Found at i:81990453 original size:44 final size:44
Alignment explanation
Indices: 81990288--81990458 Score: 134
Period size: 44 Copynumber: 3.8 Consensus size: 44
81990278 AATCTTATTT
81990288 CCCTGAAGTTGCAGTGGAGCAAGA-TGAAGCTACAAATCCTATAC
1 CCCTGAAGTTGCAGTGGAGCAA-ATTGAAGCTACAAATCCTATAC
** * *
81990332 CCCTGAAGTTGCAGTGG-GTCGGATTGAATCTACCATAGCGAATCTTAT-C
1 CCCTGAAGTTGCAGTGGAG-CAAATTGAAGCTA-C--A---AATCCTATAC
* * * *
81990381 TACCTGAAATTGTAGTGGAGCAGATTGAAGCTACAAATCCTATAC
1 -CCCTGAAGTTGCAGTGGAGCAAATTGAAGCTACAAATCCTATAC
* *
81990426 CCCTGAAGTTGCAGTTGG-TCAAATTGAATCTAC
1 CCCTGAAGTTGCAG-TGGAGCAAATTGAAGCTAC
81990459 TATAGTGAAT
Statistics
Matches: 99, Mismatches: 16, Indels: 24
0.71 0.12 0.17
Matches are distributed among these distances:
43 2 0.02
44 55 0.56
45 5 0.05
47 2 0.02
49 2 0.02
50 32 0.32
51 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.26
Consensus pattern (44 bp):
CCCTGAAGTTGCAGTGGAGCAAATTGAAGCTACAAATCCTATAC
Found at i:81990547 original size:94 final size:94
Alignment explanation
Indices: 81990103--81990536 Score: 424
Period size: 94 Copynumber: 4.7 Consensus size: 94
81990093 AAATCATACA
*
81990103 TCCCTGAAGTTGTAGTGGATCG-A-ATTGAAGCTGCAAATCCTATACCCCTTG--G---CAGTGG
1 TCCCTGAAGTTGTAGTGGA--GAAGATTGAAGCTACAAATCCTATACCCC-TGAAGTTACAGTGG
* *
81990161 GTC-GAATTGAAGT-TACCATAGTGAATCTTATC
63 GTCAG-ATTGAA-TCTACAATAGCGAATCTTATC
* * * * * * *
81990193 TCCCTAAAGCTGCAATGGAGTAAGA-TGCAGCTACAATTCCTATACCCTTGAAGTTACAGTGGGT
1 TCCCTGAAGTTGTAGTGGAG-AAGATTGAAGCTACAAATCCTATACCCCTGAAGTTACAGTGGGT
* * * *
81990257 TAGAATG-ATACTACAATGGCGAATCTTATT
65 CAGATTGAAT-CTACAATAGCGAATCTTATC
* *
81990287 TCCCTGAAGTTGCAGTGGAGCAAGA-TGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGT
1 TCCCTGAAGTTGTAGTGGAG-AAGATTGAAGCTACAAATCCTATACCCCTGAAGTTACAGTGGGT
* *
81990351 CGGATTGAATCTACCATAGCGAATCTTATC
65 CAGATTGAATCTACAATAGCGAATCTTATC
* * * * *
81990381 TACCTGAAATTGTAGTGGAGCAGATTGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTTGGTC
1 TCCCTGAAGTTGTAGTGGAGAAGATTGAAGCTACAAATCCTATACCCCTGAAGTTACAGTGGGTC
* * * *
81990446 AAATTGAATCTACTATAGTGAATTTTATC
66 AGATTGAATCTACAATAGCGAATCTTATC
* * ** *
81990475 TCCCTGATGTTGTAGTGTAGAAGATTGAAGCTACAAATCCTATACCATTGAAGTTACGGTGG
1 TCCCTGAAGTTGTAGTGGAGAAGATTGAAGCTACAAATCCTATACCCCTGAAGTTACAGTGG
81990537 ATTGGATTGA
Statistics
Matches: 283, Mismatches: 48, Indels: 22
0.80 0.14 0.06
Matches are distributed among these distances:
88 1 0.00
89 2 0.01
90 35 0.12
91 2 0.01
92 1 0.00
93 4 0.01
94 235 0.83
95 3 0.01
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (94 bp):
TCCCTGAAGTTGTAGTGGAGAAGATTGAAGCTACAAATCCTATACCCCTGAAGTTACAGTGGGTC
AGATTGAATCTACAATAGCGAATCTTATC
Found at i:81992644 original size:45 final size:44
Alignment explanation
Indices: 81992545--81992713 Score: 220
Period size: 45 Copynumber: 3.8 Consensus size: 44
81992535 ATTCATCCAT
* *
81992545 CGGCATT-TCGCCTGCTAGGCTCGAA-GCCCG-ATATCATTTCAC
1 CGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAT-ATTTCAC
* *
81992587 CGGCATTATAGCCTGCTAGGCTCGAAGGCCTGAATAGTATTTCAC
1 CGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA-TATTTCAC
*
81992632 CGGCATTGTAGCCTGCTAGGCTCAAAGGCCCGAATAATATCTT-AC
1 CGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAAT-ATAT-TTCAC
*
81992677 CGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAT
1 CGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAT
81992714 TACTGTACGA
Statistics
Matches: 114, Mismatches: 7, Indels: 10
0.87 0.05 0.08
Matches are distributed among these distances:
42 7 0.06
43 17 0.15
44 6 0.05
45 80 0.70
46 4 0.04
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.24
Consensus pattern (44 bp):
CGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATATATTTCAC
Found at i:82003288 original size:41 final size:42
Alignment explanation
Indices: 82003217--82003411 Score: 130
Period size: 45 Copynumber: 4.5 Consensus size: 42
82003207 GTCAAATCAT
* ** *
82003217 CGGCATTTAGCCTGCTAGGTTTTAAACCCGA-ATTCA-TCCAC
1 CGGCATTTAGCCTGCTAGGCTCGAAGCCCGATA-TCATTCCAC
* * *
82003258 CGGCATTTCGCCTGCTAGGCTCGAAGCCCGATATCATTTCAT
1 CGGCATTTAGCCTGCTAGGCTCGAAGCCCGATATCATTCCAC
* *
82003300 CGGCATTATAGCCTGCTAGGCTCGAAGGCCCTAATAGT-ATTTCAC
1 CGGCATT-TAGCCTGCTAGGCTCGAA-GCCC-GATA-TCATTCCAC
* * * *
82003345 CGGTATTGTAGCCTACTAGGCTCAAAGGCCTGA-AT-AGTATCTCAC
1 CGGCATT-TAGCCTGCTAGGCTCGAA-GCCCGATATCA-T-TC-CAC
*
82003390 CGGCATCATAGCCTGCTAGGCT
1 CGGCAT-TTAGCCTGCTAGGCT
82003412 TAAAGGCCCG
Statistics
Matches: 124, Mismatches: 20, Indels: 16
0.77 0.12 0.10
Matches are distributed among these distances:
41 29 0.23
42 13 0.10
43 19 0.15
44 6 0.05
45 56 0.45
46 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.27
Consensus pattern (42 bp):
CGGCATTTAGCCTGCTAGGCTCGAAGCCCGATATCATTCCAC
Found at i:82003358 original size:45 final size:45
Alignment explanation
Indices: 82003255--82003425 Score: 181
Period size: 45 Copynumber: 3.9 Consensus size: 45
82003245 CGAATTCATC
* * *
82003255 CACCGGCATT-TCGCCTGCTAGGCTCGAA-GCCC-GATA-TCATTT
1 CACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCTAATAGT-ATTT
* *
82003297 CATCGGCATTATAGCCTGCTAGGCTCGAAGGCCCTAATAGTATTT
1 CACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCTAATAGTATTT
* * * *
82003342 CACCGGTATTGTAGCCTACTAGGCTCAAAGG-CCTGAATAGTATCT
1 CACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCT-AATAGTATTT
* * *
82003387 CACCGGCATCATAGCCTGCTAGGCTTAAAGGCCCGAATA
1 CACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCTAATA
82003426 TTACTGTACG
Statistics
Matches: 108, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
42 9 0.08
43 17 0.16
44 7 0.06
45 72 0.67
46 3 0.03
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (45 bp):
CACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCTAATAGTATTT
Found at i:82023627 original size:21 final size:20
Alignment explanation
Indices: 82023590--82023628 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
82023580 GAACTTGGAC
**
82023590 TTTTTTTTTGGGTTTATTAT
1 TTTTTTTTTGGACTTATTAT
82023610 TTTTGTTTTTGGACTTATT
1 TTTT-TTTTTGGACTTATT
82023629 TCTGGGCCCG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.10, C:0.03, G:0.15, T:0.72
Consensus pattern (20 bp):
TTTTTTTTTGGACTTATTAT
Found at i:82037401 original size:7 final size:7
Alignment explanation
Indices: 82037384--82037439 Score: 55
Period size: 8 Copynumber: 7.9 Consensus size: 7
82037374 CTATTTCAAA
82037384 AAAAAAGG
1 AAAAAA-G
82037392 AAAAAAG
1 AAAAAAG
82037399 --AAAAG
1 AAAAAAG
82037404 AAAAAGAG
1 AAAAA-AG
82037412 AAAAATA-
1 AAAAA-AG
82037419 ATAAAAAG
1 A-AAAAAG
82037427 AAAAAAG
1 AAAAAAG
82037434 AAAAAA
1 AAAAAA
82037440 AGGAGAGGCC
Statistics
Matches: 42, Mismatches: 1, Indels: 11
0.78 0.02 0.20
Matches are distributed among these distances:
5 5 0.12
7 18 0.43
8 19 0.45
ACGTcount: A:0.82, C:0.00, G:0.14, T:0.04
Consensus pattern (7 bp):
AAAAAAG
Found at i:82037402 original size:13 final size:12
Alignment explanation
Indices: 82037381--82037437 Score: 57
Period size: 12 Copynumber: 4.9 Consensus size: 12
82037371 ATTCTATTTC
*
82037381 AAAAAA-AAAGG
1 AAAAAAGAAAAG
82037392 AAAAAAGAAAAG
1 AAAAAAGAAAAG
82037404 AAAAAGAGAAAA-
1 AAAAA-AGAAAAG
* *
82037416 ATAATA-AAAAG
1 AAAAAAGAAAAG
82037427 AAAAAAGAAAA
1 AAAAAAGAAAA
82037438 AAAGGAGAGG
Statistics
Matches: 37, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
10 4 0.11
11 11 0.30
12 16 0.43
13 6 0.16
ACGTcount: A:0.82, C:0.00, G:0.14, T:0.04
Consensus pattern (12 bp):
AAAAAAGAAAAG
Found at i:82037416 original size:30 final size:30
Alignment explanation
Indices: 82037382--82037438 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
82037372 TTCTATTTCA
*
82037382 AAAAAAAAGGAAAAA-AGAAAAGAAAAAGAG
1 AAAAAAAA-GAAAAAGAAAAAAGAAAAAGAG
* *
82037412 AAAAATAATAAAAAGAAAAAAGAAAAA
1 AAAAAAAAGAAAAAGAAAAAAGAAAAA
82037439 AAGGAGAGGC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
29 5 0.22
30 18 0.78
ACGTcount: A:0.82, C:0.00, G:0.14, T:0.04
Consensus pattern (30 bp):
AAAAAAAAGAAAAAGAAAAAAGAAAAAGAG
Found at i:82038661 original size:166 final size:164
Alignment explanation
Indices: 82038387--82039254 Score: 1087
Period size: 166 Copynumber: 5.2 Consensus size: 164
82038377 AAAATTCAGT
* *
82038387 GCCTTAATCCTCTAAGCAGTAGGGTAACAAGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
* *
82038452 TGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAATAGG-TTTGCATATCTTAT
66 TGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGATTTGCAGATCTTAT
*
82038516 CTCCCTAAGCAGTAGCGGAGCAGATCGACGACGACTC
131 CTCCCTAAGCAGTAGTGGAGCAGATCGA--A-GACTC
* * *
82038553 GCCTTAATCCCCTAAGCACTAGGGTAACAGGTTAAATTTACAGATCTTATCTCCCTAAGCAGTAA
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
* *
82038618 TGGAGCAGATCGAAAACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGG-TTCGCAGATCTTAT
66 TGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGATTTGCAGATCTTAT
**
82038682 CTCCCTAAGCAGTAGCAGAGCAGATCGACGACGACTC
131 CTCCCTAAGCAGTAGTGGAGCAGATCGA--A-GACTC
* * * *
82038719 ACCTTCATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAAATCTTATCTCCCTAAGAAGTAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
* **
82038784 TGGAGCAGATCGAAGACCCGCCTTAATCCCCTAAGGGGTAGGGTAACAGGTTAAATTTGCAGATC
66 TGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGG----ATTTGCAGATC
*
82038849 TTATCTCCCTAAGCAGTAATGGAGCAGATCGAAGACTC
127 TTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTC
* *
82038887 GCCTTAATCCCCTAAGCAGTAGGGTAATAGG-----TTTGCATATCTTATCTCCCTAAGCAGTAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
* *
82038947 CGGAGCAGATCGACGACGACTCGCCTTAATCCCCTAAGCACTAGGGTAACAGGTTAAATTTGCAG
66 TGGAGCAGATCGA--A-GACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGG----ATTTGCAG
* * *
82039012 ATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCAAAAACTC
124 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTC
* *
82039053 GCCTTAATCCCCTAAGCAGTAGGGTAACAGG-----TTCGCAGATCTTATCTCCCTAAGAAGTAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
* * * * *
82039113 CGAAGCAGATCGACCACGACTCACCTTAATCCCCTAAGTAGTAGGGTAACAGGTTAAATTTGCAA
66 TGGAGCAGATCGA--A-GACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGG----ATTTGCAG
*
82039178 ATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGA-TGC
124 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACT-C
* *
82039219 GCCTTAACCCCCTAAGCAGTAGGGTAACATGTTAAA
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAA
82039255 GTATAGCAAA
Statistics
Matches: 635, Mismatches: 53, Indels: 23
0.89 0.07 0.03
Matches are distributed among these distances:
163 39 0.06
165 2 0.00
166 522 0.82
168 33 0.05
169 1 0.00
171 38 0.06
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.24
Consensus pattern (164 bp):
GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
TGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGATTTGCAGATCTTAT
CTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTC
Found at i:82038828 original size:250 final size:247
Alignment explanation
Indices: 82038387--82039254 Score: 1128
Period size: 250 Copynumber: 3.5 Consensus size: 247
82038377 AAAATTCAGT
* *
82038387 GCCTTAATCCTCTAAGCAGTAGGGTAACAAGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAAC-AG----GTTTGCAGATCTTATCTCCCTAAGCAGTAG
* * *
82038452 TGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAATAGG-----TTTGCATATC
61 CGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAAATC
* *
82038512 TTATCTCCCTAAGCAGTAGCGGAGCAGATCGACGACGACTCGCCTTAATCCCCTAAGCACTAGGG
126 TTATCTCCCTAAGCAGTAGTGGAGCAGATCGA--A-GACTCGCCTTAATCCCCTAAGCAGTAGGG
* *
82038577 TAACAGGTTAAATTTACAGATCTTATCTCCCTAAGCAGTAATGGAGCAGATCGAAAACTC
188 TAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAATGGAGCAGATCGAAGACTC
* *
82038637 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTCGCAGATCTTATCTCCCTAAGCAGTAGCAGAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTTGCAGATCTTATCTCCCTAAGCAGTAGCGGAG
* *
82038702 CAGATCGACGACGACTCACCTTCATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAAATCTT
66 CAGATCGA--A-GACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAAATCTT
* * **
82038767 ATCTCCCTAAGAAGTAGTGGAGCAGATCGAAGACCCGCCTTAATCCCCTAAGGGGTAGGGTAACA
128 ATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACA
82038832 GGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAATGGAGCAGATCGAAGACTC
193 GGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAATGGAGCAGATCGAAGACTC
* *
82038887 GCCTTAATCCCCTAAGCAGTAGGGTAATAGGTTTGCATATCTTATCTCCCTAAGCAGTAGCGGAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTTGCAGATCTTATCTCCCTAAGCAGTAGCGGAG
* *
82038952 CAGATCGACGACGACTCGCCTTAATCCCCTAAGCACTAGGGTAACAGGTTAAATTTGCAGATCTT
66 CAGATCGA--A-GACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAAATCTT
* * *
82039017 ATCTCCCTAAGCAGTAGTGGAGTAGATCAAAAACTCGCCTTAATCCCCTAAGCAGTAGGGTAACA
128 ATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACA
* * ** *
82039082 GG-----TTCGCAGATCTTATCTCCCTAAGAAGTAGCGAAGCAGATCGACCACGACTC
193 GGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAATGGAGCAGATCGA--A-GACTC
* * *
82039135 ACCTTAATCCCCTAAGTAGTAGGGTAACAGGTTAAATTTGCAAATCTTATCTCCCTAAGCAGTAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGG-----TTTGCAGATCTTATCTCCCTAAGCAGTAG
* * * *
82039200 TGGAGTAGATCGAAGA-TGCGCCTTAACCCCCTAAGCAGTAGGGTAACATGTTAAA
61 CGGAGCAGATCGAAGACT-CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAA
82039255 GTATAGCAAA
Statistics
Matches: 555, Mismatches: 46, Indels: 34
0.87 0.07 0.05
Matches are distributed among these distances:
245 76 0.14
247 2 0.00
248 66 0.12
249 3 0.01
250 328 0.59
251 2 0.00
253 78 0.14
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.24
Consensus pattern (247 bp):
GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTTGCAGATCTTATCTCCCTAAGCAGTAGCGGAG
CAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAAATCTTATC
TCCCTAAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGT
TAAATTTGCAGATCTTATCTCCCTAAGCAGTAATGGAGCAGATCGAAGACTC
Found at i:82039158 original size:416 final size:416
Alignment explanation
Indices: 82038387--82039254 Score: 1549
Period size: 416 Copynumber: 2.1 Consensus size: 416
82038377 AAAATTCAGT
* *
82038387 GCCTTAATCCTCTAAGCAGTAGGGTAACAAGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAAGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAA
82038452 TGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAATAGGTTTGCATATCTTATC
66 TGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAATAGGTTTGCATATCTTATC
82038517 TCCCTAAGCAGTAGCGGAGCAGATCGACGACGACTCGCCTTAATCCCCTAAGCACTAGGGTAACA
131 TCCCTAAGCAGTAGCGGAGCAGATCGACGACGACTCGCCTTAATCCCCTAAGCACTAGGGTAACA
*
82038582 GGTTAAATTTACAGATCTTATCTCCCTAAGCAGTAATGGAGCAGATCGAAAACTCGCCTTAATCC
196 GGTTAAATTTACAGATCTTATCTCCCTAAGCAGTAATGGAGCAGATCAAAAACTCGCCTTAATCC
* *
82038647 CCTAAGCAGTAGGGTAACAGGTTCGCAGATCTTATCTCCCTAAGCAGTAGCAGAGCAGATCGACG
261 CCTAAGCAGTAGGGTAACAGGTTCGCAGATCTTATCTCCCTAAGAAGTAGCAGAGCAGATCGACC
*
82038712 ACGACTCACCTTCATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAAATCTTATCTCCCTAA
326 ACGACTCACCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAAATCTTATCTCCCTAA
82038777 GAAGTAGTGGAGCAGATCGAAGACCC
391 GAAGTAGTGGAGCAGATCGAAGACCC
** *
82038803 GCCTTAATCCCCTAAGGGGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAA
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAAGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAA
82038868 TGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAATAGGTTTGCATATCTTATC
66 TGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAATAGGTTTGCATATCTTATC
82038933 TCCCTAAGCAGTAGCGGAGCAGATCGACGACGACTCGCCTTAATCCCCTAAGCACTAGGGTAACA
131 TCCCTAAGCAGTAGCGGAGCAGATCGACGACGACTCGCCTTAATCCCCTAAGCACTAGGGTAACA
* * *
82038998 GGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCAAAAACTCGCCTTAATCC
196 GGTTAAATTTACAGATCTTATCTCCCTAAGCAGTAATGGAGCAGATCAAAAACTCGCCTTAATCC
82039063 CCTAAGCAGTAGGGTAACAGGTTCGCAGATCTTATCTCCCTAAGAAGTAGC-GAAGCAGATCGAC
261 CCTAAGCAGTAGGGTAACAGGTTCGCAGATCTTATCTCCCTAAGAAGTAGCAG-AGCAGATCGAC
*
82039127 CACGACTCACCTTAATCCCCTAAGTAGTAGGGTAACAGGTTAAATTTGCAAATCTTATCTCCCTA
325 CACGACTCACCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAAATCTTATCTCCCTA
* * **
82039192 AGCAGTAGTGGAGTAGATCGAAGATGC
390 AGAAGTAGTGGAGCAGATCGAAGACCC
* *
82039219 GCCTTAACCCCCTAAGCAGTAGGGTAACATGTTAAA
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAAGTTAAA
82039255 GTATAGCAAA
Statistics
Matches: 430, Mismatches: 21, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
415 1 0.00
416 429 1.00
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.24
Consensus pattern (416 bp):
GCCTTAATCCCCTAAGCAGTAGGGTAACAAGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAA
TGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAATAGGTTTGCATATCTTATC
TCCCTAAGCAGTAGCGGAGCAGATCGACGACGACTCGCCTTAATCCCCTAAGCACTAGGGTAACA
GGTTAAATTTACAGATCTTATCTCCCTAAGCAGTAATGGAGCAGATCAAAAACTCGCCTTAATCC
CCTAAGCAGTAGGGTAACAGGTTCGCAGATCTTATCTCCCTAAGAAGTAGCAGAGCAGATCGACC
ACGACTCACCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAAATCTTATCTCCCTAA
GAAGTAGTGGAGCAGATCGAAGACCC
Found at i:82040096 original size:19 final size:19
Alignment explanation
Indices: 82040072--82040158 Score: 133
Period size: 19 Copynumber: 4.7 Consensus size: 19
82040062 AATCTTTAAG
*
82040072 GATATGCAATCTTAGGTAT
1 GATATGCAATCTTAGATAT
82040091 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* *
82040110 GATA--CTATCTTAGATTT
1 GATATGCAATCTTAGATAT
82040127 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
82040146 GATATGCAATCTT
1 GATATGCAATCTT
82040159 GAAGATATCA
Statistics
Matches: 61, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
17 15 0.25
19 46 0.75
ACGTcount: A:0.33, C:0.11, G:0.16, T:0.39
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:82040120 original size:36 final size:36
Alignment explanation
Indices: 82040080--82040149 Score: 122
Period size: 36 Copynumber: 1.9 Consensus size: 36
82040070 AGGATATGCA
*
82040080 ATCTTAGGTATGATATGCAATCTTAGATATGATACT
1 ATCTTAGATATGATATGCAATCTTAGATATGATACT
*
82040116 ATCTTAGATTTGATATGCAATCTTAGATATGATA
1 ATCTTAGATATGATATGCAATCTTAGATATGATA
82040150 TGCAATCTTG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.34, C:0.10, G:0.16, T:0.40
Consensus pattern (36 bp):
ATCTTAGATATGATATGCAATCTTAGATATGATACT
Found at i:82040784 original size:21 final size:20
Alignment explanation
Indices: 82040752--82040798 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 20
82040742 TTTTTGCATG
82040752 TATTATGTTTTTCT-TTTAGTT
1 TATTATGTTTTT-TATTT-GTT
82040773 TATTCATG-TTTTTATTTGTT
1 TATT-ATGTTTTTTATTTGTT
82040793 TATTAT
1 TATTAT
82040799 CTTATATTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
19 2 0.08
20 8 0.33
21 11 0.46
22 3 0.12
ACGTcount: A:0.17, C:0.04, G:0.09, T:0.70
Consensus pattern (20 bp):
TATTATGTTTTTTATTTGTT
Found at i:82040795 original size:20 final size:21
Alignment explanation
Indices: 82040752--82040798 Score: 62
Period size: 22 Copynumber: 2.3 Consensus size: 21
82040742 TTTTTGCATG
*
82040752 TATTATGTTTTTCTTTTAGTT
1 TATTATGTTTTTCATTTAGTT
82040773 TATTCATGTTTTT-ATTT-GTT
1 TATT-ATGTTTTTCATTTAGTT
82040793 TATTAT
1 TATTAT
82040799 CTTATATTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
19 2 0.08
20 7 0.29
21 7 0.29
22 8 0.33
ACGTcount: A:0.17, C:0.04, G:0.09, T:0.70
Consensus pattern (21 bp):
TATTATGTTTTTCATTTAGTT
Found at i:82055889 original size:19 final size:17
Alignment explanation
Indices: 82055865--82055899 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 17
82055855 TTTTTTAAAA
82055865 TAATTTATGAATTATTTAT
1 TAATTTAT--ATTATTTAT
82055884 TAATTTATATTATTTA
1 TAATTTATATTATTTA
82055900 AATTATTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.50
19 8 0.50
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (17 bp):
TAATTTATATTATTTAT
Found at i:82055904 original size:19 final size:20
Alignment explanation
Indices: 82055852--82055904 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 20
82055842 ACAATTCGTG
* *
82055852 TAATTTTTTAAAATAATTTA
1 TAATTATTTAAATTAATTTA
82055872 TGAATTATTT--ATTAATTTA
1 T-AATTATTTAAATTAATTTA
82055891 T-ATTATTTAAATTA
1 TAATTATTTAAATTA
82055905 TTATTTTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
17 7 0.25
19 13 0.46
20 1 0.04
21 7 0.25
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.57
Consensus pattern (20 bp):
TAATTATTTAAATTAATTTA
Found at i:82056452 original size:42 final size:42
Alignment explanation
Indices: 82056393--82056478 Score: 172
Period size: 42 Copynumber: 2.0 Consensus size: 42
82056383 TCAAACAAAG
82056393 TATGATTTTCTTTTGTAATTCATTTTGTATTTACATCTTATT
1 TATGATTTTCTTTTGTAATTCATTTTGTATTTACATCTTATT
82056435 TATGATTTTCTTTTGTAATTCATTTTGTATTTACATCTTATT
1 TATGATTTTCTTTTGTAATTCATTTTGTATTTACATCTTATT
82056477 TA
1 TA
82056479 GTACATTTAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.22, C:0.09, G:0.07, T:0.62
Consensus pattern (42 bp):
TATGATTTTCTTTTGTAATTCATTTTGTATTTACATCTTATT
Found at i:82061691 original size:22 final size:22
Alignment explanation
Indices: 82061661--82061721 Score: 63
Period size: 22 Copynumber: 2.9 Consensus size: 22
82061651 ATTGAACATG
82061661 TGCA-TGTGCGAACCTCTTCCA
1 TGCATTGTGCGAACCTCTTCCA
* * *
82061682 TGCATTGTGCAAACCTCATCTA
1 TGCATTGTGCGAACCTCTTCCA
**
82061704 TGTGTTGTGCGAA-CTCTT
1 TGCATTGTGCGAACCTCTT
82061722 AGCATGAATC
Statistics
Matches: 32, Mismatches: 7, Indels: 2
0.78 0.17 0.05
Matches are distributed among these distances:
21 8 0.25
22 24 0.75
ACGTcount: A:0.20, C:0.26, G:0.20, T:0.34
Consensus pattern (22 bp):
TGCATTGTGCGAACCTCTTCCA
Found at i:82065216 original size:32 final size:33
Alignment explanation
Indices: 82065155--82065269 Score: 94
Period size: 32 Copynumber: 3.5 Consensus size: 33
82065145 TTAAAATTAT
*
82065155 AATAATA-AAGAT-AAAGATAAACAACATAATA
1 AATAATATATGATAAAAGATAAACAACATAATA
* *
82065186 AATAATATATGATAAAATATAAATAA-ATAATA
1 AATAATATATGATAAAAGATAAACAACATAATA
* * * * *
82065218 GATAATATAT-ATAATAGACAACATAACACAATA
1 AATAATATATGATAAAAGATAA-ACAACATAATA
*
82065251 ATATAAATATATAATAAAA
1 A-AT-AATATATGATAAAA
82065270 TAATATACGA
Statistics
Matches: 67, Mismatches: 10, Indels: 9
0.78 0.12 0.10
Matches are distributed among these distances:
31 15 0.22
32 23 0.34
33 15 0.22
34 2 0.03
35 7 0.10
36 5 0.07
ACGTcount: A:0.64, C:0.05, G:0.04, T:0.26
Consensus pattern (33 bp):
AATAATATATGATAAAAGATAAACAACATAATA
Found at i:82066042 original size:17 final size:17
Alignment explanation
Indices: 82066015--82066052 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
82066005 TGTATGTATT
82066015 GAAAAAAAACAA-AAAC
1 GAAAAAAAACAATAAAC
82066031 GAAAAAATAACAATAAAC
1 GAAAAAA-AACAATAAAC
82066049 -AAAA
1 GAAAA
82066053 TATCACCTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 7 0.35
17 9 0.45
18 4 0.20
ACGTcount: A:0.79, C:0.11, G:0.05, T:0.05
Consensus pattern (17 bp):
GAAAAAAAACAATAAAC
Found at i:82067061 original size:44 final size:44
Alignment explanation
Indices: 82066962--82067346 Score: 497
Period size: 44 Copynumber: 8.7 Consensus size: 44
82066952 CTTGGATCTG
* * * * *
82066962 GAGATGCCAAATTTGCT-TCTTGGATTTGCTCCTCGTCAAAATAC-
1 GAGATGCCAAATCTGCTATCTTCGATCTGCT-CTC-TGACAATACA
* * *
82067006 GAAGATTCCAAATCTACTATCTTCAATCTGCTCTCTGACAATACA
1 G-AGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACA
* * *
82067051 GAGATGCCAAATCTGCTATCTTTGATCTACTCTCTGATAATACA
1 GAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACA
** *
82067095 GAGATGCCAAATCTGCTATCTTCGATCTATTCTCTGACAATACT
1 GAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACA
*
82067139 GAGATGTCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACA
1 GAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACA
*
82067183 GAGATGCCAAATATGCTATCTTCGAT-TCGCTCTCTGACAATACA
1 GAGATGCCAAATCTGCTATCTTCGATCT-GCTCTCTGACAATACA
* *
82067227 GAGACGCCAAATCTGCTATCTTCAATCTGCTCTCTGACAATACA
1 GAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACA
* ** *
82067271 GAGACGCCAAATCTGCTATCTTTAATCTGTTCTCTGACAATACA
1 GAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACA
* *
82067315 AAGATGCCAAATCTACTATCTTCGATCTGCTC
1 GAGATGCCAAATCTGCTATCTTCGATCTGCTC
82067347 CTTGTAAATG
Statistics
Matches: 301, Mismatches: 35, Indels: 10
0.87 0.10 0.03
Matches are distributed among these distances:
43 1 0.00
44 272 0.90
45 18 0.06
46 10 0.03
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32
Consensus pattern (44 bp):
GAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACA
Found at i:82079653 original size:15 final size:15
Alignment explanation
Indices: 82079628--82079674 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
82079618 AAGAAACCGA
82079628 ATAAA-AAATCCAAG
1 ATAAAGAAATCCAAG
*
82079642 ATAGAGAAATCC-AG
1 ATAAAGAAATCCAAG
*
82079656 AATAAAGAAACCCAAG
1 -ATAAAGAAATCCAAG
82079672 ATA
1 ATA
82079675 CGATACTATG
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
14 6 0.22
15 19 0.70
16 2 0.07
ACGTcount: A:0.60, C:0.15, G:0.13, T:0.13
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:82079673 original size:30 final size:27
Alignment explanation
Indices: 82079619--82079674 Score: 76
Period size: 30 Copynumber: 2.0 Consensus size: 27
82079609 AAAGATAACA
*
82079619 AGAAACCGAATAAAAAATCCAAGATAG
1 AGAAACCGAATAAAAAACCCAAGATAG
82079646 AGAAATCCAGAATAAAGAAACCCAAGATA
1 AGAAA-CC-GAATAAA-AAACCCAAGATA
82079675 CGATACTATG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
27 5 0.20
28 2 0.08
29 7 0.28
30 11 0.44
ACGTcount: A:0.59, C:0.16, G:0.14, T:0.11
Consensus pattern (27 bp):
AGAAACCGAATAAAAAACCCAAGATAG
Found at i:82082732 original size:92 final size:92
Alignment explanation
Indices: 82082621--82082790 Score: 304
Period size: 92 Copynumber: 1.8 Consensus size: 92
82082611 GCCCATAAGT
* *
82082621 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
82082686 CGAGCTCGGATGCCTAGTTACATTCTC
66 CGAGCTCGGATGCCTAGTTACATTCTC
*
82082713 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
82082778 CGAGTTCGGATGC
66 CGAGCTCGGATGC
82082791 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
92 74 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATTCTC
Found at i:82082787 original size:46 final size:46
Alignment explanation
Indices: 82082613--82082787 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
82082603 TGTAACCCGC
* *
82082613 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
82082659 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* ** *
82082705 ACAT-TCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
82082751 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
82082788 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 100 0.90
47 1 0.01
48 4 0.04
49 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:82082806 original size:46 final size:46
Alignment explanation
Indices: 82082618--82082806 Score: 142
Period size: 46 Copynumber: 4.1 Consensus size: 46
82082608 CCCGCCCATA
** * *
82082618 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTC--GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCAACCATCC-T
*
82082663 AAGTGAACTCGGACTCAACTCAACGAGCTCGGATGC-CTAGTTA-CATTCT
1 -AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTC-A---ACCATCCT
* * * * * *
82082712 --CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGCTCAACCATCCT
*
82082756 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCAACCATCCT
82082802 AGTGA
1 AGTGA
82082807 CATGTCACTT
Statistics
Matches: 115, Mismatches: 14, Indels: 28
0.73 0.09 0.18
Matches are distributed among these distances:
44 9 0.08
45 1 0.01
46 95 0.83
48 4 0.03
49 2 0.02
50 4 0.03
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCAACCATCCT
Found at i:82087359 original size:51 final size:49
Alignment explanation
Indices: 82087298--82087426 Score: 159
Period size: 51 Copynumber: 2.6 Consensus size: 49
82087288 AGCGAGGTCG
*
82087298 CATGTGTAGTACTAAGTGCAAGCTACTATACGTACCCGATAACTTCGATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATACGTACCCGATAA-TT-GATCA
* *** * * *
82087349 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCG
1 CATGTGTAGTACTAAGTGCAGGCTACTATACGTACCCGATAATTGATCA
*
82087398 CATGTGTAGTACTAAGTGTAGGCTACTAT
1 CATGTGTAGTACTAAGTGCAGGCTACTAT
82087427 GTGTACCAGA
Statistics
Matches: 67, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
49 29 0.43
50 2 0.03
51 36 0.54
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.29
Consensus pattern (49 bp):
CATGTGTAGTACTAAGTGCAGGCTACTATACGTACCCGATAATTGATCA
Found at i:82087408 original size:49 final size:51
Alignment explanation
Indices: 82087293--82087438 Score: 188
Period size: 49 Copynumber: 2.9 Consensus size: 51
82087283 TATGTAGCGA
* ** *
82087293 GGTCGCATGTGTAGTACTAAGTGCAAGCTACTATACGTACCCGATAACTTC
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAACTTC
* * * * *
82087344 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TT-
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAACTTC
*
82087393 GGTCGCATGTGTAGTACTAAGTGTAGGCTACTATGTGTACCAGATA
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATA
82087439 GTTTGGCTAC
Statistics
Matches: 81, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
49 40 0.49
50 2 0.02
51 39 0.48
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (51 bp):
GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAACTTC
Found at i:82098645 original size:15 final size:14
Alignment explanation
Indices: 82098616--82098658 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
82098606 AATATCAATT
82098616 TAATATGAA-AATAA
1 TAATAT-AATAATAA
*
82098630 TAATGTAAATAATAA
1 TAATAT-AATAATAA
82098645 TAATATAATAATAA
1 TAATATAATAATAA
82098659 ATATTTTGCA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
14 15 0.60
15 10 0.40
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.33
Consensus pattern (14 bp):
TAATATAATAATAA
Found at i:82098755 original size:13 final size:12
Alignment explanation
Indices: 82098732--82098763 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
82098722 AAATATATTT
82098732 ATATAATAAAAC
1 ATATAATAAAAC
82098744 ATATAATAAAA-
1 ATATAATAAAAC
82098755 ATAT-ATAAA
1 ATATAATAAA
82098764 TAAGATAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 5 0.25
11 4 0.20
12 11 0.55
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (12 bp):
ATATAATAAAAC
Found at i:82098870 original size:24 final size:22
Alignment explanation
Indices: 82098827--82098871 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
82098817 ATACATCAAT
* *
82098827 AAAATATAATGAAATTTAATAA
1 AAAATATAATAAAATATAATAA
82098849 AAAATATATATAAAATAATAATA
1 AAAATATA-ATAAAAT-ATAATA
82098872 TAAGTATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 8 0.42
23 6 0.32
24 5 0.26
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (22 bp):
AAAATATAATAAAATATAATAA
Found at i:82108204 original size:17 final size:17
Alignment explanation
Indices: 82108159--82108222 Score: 65
Period size: 17 Copynumber: 3.6 Consensus size: 17
82108149 AATTATATGT
*
82108159 TATTTTATCATATTATTTA
1 TATTTTATTATA-T-TTTA
*
82108178 TATTTCATTATATTTTA
1 TATTTTATTATATTTTA
* * *
82108195 TATTTTATTACATATCA
1 TATTTTATTATATTTTA
82108212 TATTTTATTAT
1 TATTTTATTAT
82108223 GTATTATTCA
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
17 27 0.71
18 1 0.03
19 10 0.26
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.62
Consensus pattern (17 bp):
TATTTTATTATATTTTA
Found at i:82120356 original size:44 final size:44
Alignment explanation
Indices: 82120292--82120715 Score: 412
Period size: 44 Copynumber: 9.5 Consensus size: 44
82120282 GGGACGATGT
* *
82120292 AGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGC
1 AGATCAAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGC
*
82120336 AGATCAAAGATAGCAAATTTGGCA--TC--T-TTGTCAGAGAGC
1 AGATCAAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGC
* * * * *
82120375 AGATCGAAGATAGTAGATTCGGCGTTTCTGTATTGTCAGAGAGC
1 AGATCAAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGC
* * *
82120419 AGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGT
1 AGATCAAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGC
*
82120463 AGATCGATGATAGCAAATTTGGCATCAGATTTGGCATCTCTGTATTGTCAGAGAGC
1 AGATC-A--A-AG---A--T---AGCAGATTTGGCATCTCTGTATTGTCAGAGAGC
*
82120519 AGATCAAAGAT-GCCAGATTTGGCATCTGTGTATTGTCAGAGAGC
1 AGATCAAAGATAG-CAGATTTGGCATCTCTGTATTGTCAGAGAGC
* * *
82120563 AGATCAAAGATAGCAGATTTGGCATCTCTGAATTTTTAGAGAGC
1 AGATCAAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGC
* ** * * * *
82120607 AGATCGAAGATAATAGATTTAGCGTCTCTATATTGTCAAAGAGC
1 AGATCAAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGC
* * * * * *
82120651 AGAT-AGAATATAGTAGGTTTGGCATCTCCGCATTTTCAGAGAGC
1 AGATCA-AAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGC
82120695 AGATCAAAGATAGCAGATTTG
1 AGATCAAAGATAGCAGATTTG
82120716 ACATTCCTGA
Statistics
Matches: 313, Mismatches: 46, Indels: 42
0.78 0.11 0.10
Matches are distributed among these distances:
39 31 0.10
40 1 0.00
41 2 0.01
42 2 0.01
43 1 0.00
44 228 0.73
45 2 0.01
47 2 0.01
48 2 0.01
49 1 0.00
51 1 0.00
52 2 0.01
53 2 0.01
55 1 0.00
56 35 0.11
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.29
Consensus pattern (44 bp):
AGATCAAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGC
Found at i:82120567 original size:100 final size:100
Alignment explanation
Indices: 82120401--82120588 Score: 297
Period size: 100 Copynumber: 1.9 Consensus size: 100
82120391 ATTCGGCGTT
* * *
82120401 TCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGTAGA
1 TCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGA
* *
82120466 TCGATGATAGCAAATTTGGCATCAGATTTGGCATC
66 TCAAAGATAGCAAATTTGGCATCAGATTTGGCATC
*
82120501 TCTGTATTGTCAGAGAGCAGATCAAAGAT-GCCAGATTTGGCATCTGTGTATTGTCAGAGAGCAG
1 TCTGTATTGTCAGAGAGCAGATCAAAGATAG-CAGATTTGGCATCTCTGTATTGTCAGAGAGCAG
*
82120565 ATCAAAGATAGCAGATTTGGCATC
65 ATCAAAGATAGCAAATTTGGCATC
82120589 TCTGAATTTT
Statistics
Matches: 80, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
99 1 0.01
100 79 0.99
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (100 bp):
TCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGA
TCAAAGATAGCAAATTTGGCATCAGATTTGGCATC
Found at i:82120643 original size:188 final size:183
Alignment explanation
Indices: 82120305--82120654 Score: 495
Period size: 188 Copynumber: 1.9 Consensus size: 183
82120295 TCGAAGATAG
*
82120305 CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAAATTTGGCATCTTTGTCAG
1 CAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAAATTTGGCATCTTTGTCAG
* * * * * *
82120370 AGAGCAGATCGAAGATAGTAGATTCGGCGTTTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAG
66 AGAGCAGATCAAAGATAGCAGATTCGGCATCTCTGAATTGTCAGAGAGCAGATCGAAGATAACAG
* * * *
82120435 ATTTGGCGTCTCTGTATTGTCAGAGAGTAGATCGATGATAGCAAATTTGGCAT
131 ATTTAGCGTCTCTATATTGTCAAAGAGCAGATCGATGATAGCAAATTTGGCAT
*
82120488 CAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGAT-GCCAGATTTGGCATCTGTGTAT
1 CAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAG-CAAATTTGGCATC----T-T
* * *
82120552 TGTCAGAGAGCAGATCAAAGATAGCAGATTTGGCATCTCTGAATTTTTAGAGAGCAGATCGAAGA
60 TGTCAGAGAGCAGATCAAAGATAGCAGATTCGGCATCTCTGAATTGTCAGAGAGCAGATCGAAGA
*
82120617 TAATAGATTTAGCGTCTCTATATTGTCAAAGAGCAGAT
125 TAACAGATTTAGCGTCTCTATATTGTCAAAGAGCAGAT
82120655 AGAATATAGT
Statistics
Matches: 145, Mismatches: 16, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
182 1 0.01
183 53 0.37
187 1 0.01
188 90 0.62
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (183 bp):
CAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAAATTTGGCATCTTTGTCAG
AGAGCAGATCAAAGATAGCAGATTCGGCATCTCTGAATTGTCAGAGAGCAGATCGAAGATAACAG
ATTTAGCGTCTCTATATTGTCAAAGAGCAGATCGATGATAGCAAATTTGGCAT
Found at i:82122547 original size:19 final size:19
Alignment explanation
Indices: 82122523--82122585 Score: 94
Period size: 19 Copynumber: 3.4 Consensus size: 19
82122513 TTTTTAAGGA
82122523 TATGCAATCTTAGATATGG
1 TATGCAATCTTAGATATGG
82122542 TATGCAATCTTAGATAT-G
1 TATGCAATCTTAGATATGG
* *
82122560 -ATACAATCTTAGATATGA
1 TATGCAATCTTAGATATGG
82122578 TATGCAAT
1 TATGCAAT
82122586 TTGGAAGATA
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
17 15 0.38
18 1 0.03
19 23 0.59
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.37
Consensus pattern (19 bp):
TATGCAATCTTAGATATGG
Found at i:82122568 original size:17 final size:17
Alignment explanation
Indices: 82122527--82122579 Score: 79
Period size: 17 Copynumber: 3.0 Consensus size: 17
82122517 TAAGGATATG
*
82122527 CAATCTTAGATATGGTATG
1 CAATCTTAGATAT-G-ATA
82122546 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
82122563 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
82122580 TGCAATTTGG
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
17 19 0.58
18 1 0.03
19 13 0.39
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (17 bp):
CAATCTTAGATATGATA
Found at i:82127840 original size:22 final size:22
Alignment explanation
Indices: 82127800--82127860 Score: 72
Period size: 22 Copynumber: 2.9 Consensus size: 22
82127790 GAATCATGCT
*
82127800 AAGA-GTTCGCACAACGCATAG
1 AAGAGGTTCGCACAATGCATAG
* * *
82127821 ATGAGGTTTGCACAATGCATGG
1 AAGAGGTTCGCACAATGCATAG
82127843 AAGAGGTTCGCAC-ATGCA
1 AAGAGGTTCGCACAATGCA
82127861 CATGTTCAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
21 8 0.24
22 25 0.76
ACGTcount: A:0.33, C:0.20, G:0.28, T:0.20
Consensus pattern (22 bp):
AAGAGGTTCGCACAATGCATAG
Found at i:82139121 original size:22 final size:22
Alignment explanation
Indices: 82139065--82139125 Score: 63
Period size: 22 Copynumber: 2.9 Consensus size: 22
82139055 GATTCATGCT
*
82139065 AAGA-GTTCGCACAACGCATAG
1 AAGAGGTTCGCACAATGCATAG
* * *
82139086 ATGAGGTTTGCACAATGCATGG
1 AAGAGGTTCGCACAATGCATAG
*
82139108 AAGAGGTTCACAC-ATGCA
1 AAGAGGTTCGCACAATGCA
82139126 CATGTTCAAT
Statistics
Matches: 32, Mismatches: 7, Indels: 2
0.78 0.17 0.05
Matches are distributed among these distances:
21 8 0.25
22 24 0.75
ACGTcount: A:0.34, C:0.20, G:0.26, T:0.20
Consensus pattern (22 bp):
AAGAGGTTCGCACAATGCATAG
Found at i:82146333 original size:15 final size:15
Alignment explanation
Indices: 82146313--82146341 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
82146303 CTGACGTGGT
82146313 AGGATTATGTTGAGG
1 AGGATTATGTTGAGG
82146328 AGGATTATGTTGAG
1 AGGATTATGTTGAG
82146342 AACGAAAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.38, T:0.34
Consensus pattern (15 bp):
AGGATTATGTTGAGG
Found at i:82149416 original size:22 final size:22
Alignment explanation
Indices: 82149360--82149420 Score: 63
Period size: 22 Copynumber: 2.9 Consensus size: 22
82149350 GATTCATGCT
*
82149360 AAGA-GTTCGCACAACGCATAG
1 AAGAGGTTCGCACAATGCATAG
* * *
82149381 ATGAGGTTTGCACAATGCATGG
1 AAGAGGTTCGCACAATGCATAG
*
82149403 AAGAGGTTCACAC-ATGCA
1 AAGAGGTTCGCACAATGCA
82149421 CATGTTCAAT
Statistics
Matches: 32, Mismatches: 7, Indels: 2
0.78 0.17 0.05
Matches are distributed among these distances:
21 8 0.25
22 24 0.75
ACGTcount: A:0.34, C:0.20, G:0.26, T:0.20
Consensus pattern (22 bp):
AAGAGGTTCGCACAATGCATAG
Found at i:82154259 original size:13 final size:14
Alignment explanation
Indices: 82154237--82154265 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
82154227 AGTGATAATG
82154237 AAATTATATAAGTA
1 AAATTATATAAGTA
82154251 AAATT-TATAAGTA
1 AAATTATATAAGTA
82154264 AA
1 AA
82154266 TATGATAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.59, C:0.00, G:0.07, T:0.34
Consensus pattern (14 bp):
AAATTATATAAGTA
Found at i:82155536 original size:20 final size:21
Alignment explanation
Indices: 82155507--82155545 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
82155497 GGTCTGTTTA
*
82155507 GGTCTGGTTTAAGT-TGGGCT
1 GGTCTAGTTTAAGTCTGGGCT
82155527 GGTCTAGTTTAAGTCTGGG
1 GGTCTAGTTTAAGTCTGGG
82155546 TTTGCTGGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.13, C:0.10, G:0.38, T:0.38
Consensus pattern (21 bp):
GGTCTAGTTTAAGTCTGGGCT
Found at i:82156336 original size:78 final size:78
Alignment explanation
Indices: 82156108--82156400 Score: 419
Period size: 78 Copynumber: 3.8 Consensus size: 78
82156098 CGAAGAAACA
* * * *
82156108 GATTTGGCATCTCCATATTCGACAGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
*
82156173 GTAGATCCAAGAT
66 GCAGATCCAAGAT
* * * * *
82156186 GATTTGGCATCTCTGTATTAGAC-GGGAGCATATCGAATACACAGCAGATCTAACCTTCATTGAA
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
82156250 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* *
82156263 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGAT-TGGACCTTCATTGA
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCT-GACCTTCATTGA
*
82156327 AGCACATCCAAGAT
65 AGCAGATCCAAGAT
* * *
82156341 GATTTGGCATCTCTATATTAGATGGGGAGCAGATCGAAGACATAGTAGTTCTGACCTTCA
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCA
82156401 CGTGTTTACG
Statistics
Matches: 192, Mismatches: 20, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
77 72 0.38
78 119 0.62
79 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (78 bp):
GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:82156637 original size:364 final size:363
Alignment explanation
Indices: 82155969--82156763 Score: 1267
Period size: 364 Copynumber: 2.2 Consensus size: 363
82155959 ATAGAAGTAG
* * * *
82155969 ATCCAAGATGATTTGGCATC-CT-TGCGTT-GACAAGGAGCAGATCGAAGACATAGCGGATTTGG
1 ATCCAAGATGATTTGGCATCTCTAT--ATTAGAC-GGGAGCAGATCGAAGACATAGCAGATTTGA
* * *
82156031 CTTTCACGTGTTTACGTTGAAGCAGATCTAAGATGATTTGGCATCTCTGTACTGTCAGAGAACAA
63 CCTTCACGTGTTTACGCTGAAGCAGATCTAAGATAATTTGGCATCTCTGTACTGTCAGAGAACAA
* *
82156096 ATCGAAGAAACAGATTTGGCATCTCCATATTCGACAGAGAGCAGATCGAAGACATAGCAGATCTG
128 ATCAAAGAAACAGATTTGGCATCTCCATATTCGACAGAGAGCAGATCGAAGACATAGCAAATCTG
* * *
82156161 ACCTTCATTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGAGCATATCGAATAC
193 ACCTTCATTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGACCAGATCGAAGAC
*
82156226 ACAGCAGATCTAACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGA
258 ACAGCAGATCTAACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTATATTAGACGGGGA
* *
82156291 GCAGATCGAAGACATAACAGATTGGACCTTCATTGAAGCAC
323 GCAGATCGAAGACATAACAGATTGGACATTCATTGAAGCAA
* *
82156332 ATCCAAGATGATTTGGCATCTCTATATTAGATGGGGAGCAGATCGAAGACATAGTAG-TTCTGAC
1 ATCCAAGATGATTTGGCATCTCTATATTAGA-CGGGAGCAGATCGAAGACATAGCAGATT-TGAC
82156396 CTTCACGTGTTTACGCTGAAGCAGATCTAAGATAATTTGGCATCTCTGTACTGTCAGAGAACAAA
64 CTTCACGTGTTTACGCTGAAGCAGATCTAAGATAATTTGGCATCTCTGTACTGTCAGAGAACAAA
**
82156461 TCAAAGAAACAGATTTGGCATCTCCATATTCGATGGAGAGCAGATCGAAGACATAGCAAATCTGA
129 TCAAAGAAACAGATTTGGCATCTCCATATTCGACAGAGAGCAGATCGAAGACATAGCAAATCTGA
*
82156526 CCTTCATTGAAG-AGATCCAAGATGATTTGGCATCTTTGTATTAGACGGGGACCAGATCGAAGAC
194 CCTTCATTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTAGAC-GGGACCAGATCGAAGAC
* *
82156590 ACAGTAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTATATTAGACGGGGA
258 ACAGCAGATCTAACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTATATTAGACGGGGA
82156655 GCAGATCGAAGACATAACAGATTGGACATTCATTGAAGCAA
323 GCAGATCGAAGACATAACAGATTGGACATTCATTGAAGCAA
* * * *
82156696 ATCCAAGATGATTTGGCATCTCTGTATTAGACGGGAGCAGATAGAAGACATAACAGATTAGACCT
1 ATCCAAGATGATTTGGCATCTCTATATTAGACGGGAGCAGATCGAAGACATAGCAGATTTGACCT
82156761 TCA
66 TCA
82156764 TTGAAGTAGA
Statistics
Matches: 397, Mismatches: 28, Indels: 14
0.90 0.06 0.03
Matches are distributed among these distances:
363 86 0.22
364 310 0.78
365 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.26
Consensus pattern (363 bp):
ATCCAAGATGATTTGGCATCTCTATATTAGACGGGAGCAGATCGAAGACATAGCAGATTTGACCT
TCACGTGTTTACGCTGAAGCAGATCTAAGATAATTTGGCATCTCTGTACTGTCAGAGAACAAATC
AAAGAAACAGATTTGGCATCTCCATATTCGACAGAGAGCAGATCGAAGACATAGCAAATCTGACC
TTCATTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGACCAGATCGAAGACACA
GCAGATCTAACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTATATTAGACGGGGAGCA
GATCGAAGACATAACAGATTGGACATTCATTGAAGCAA
Found at i:82156649 original size:78 final size:78
Alignment explanation
Indices: 82156472--82156841 Score: 514
Period size: 78 Copynumber: 4.8 Consensus size: 78
82156462 CAAAGAAACA
** * * * *
82156472 GATTTGGCATCTCCATATTCGATGGAGAGCAGATCGAAGACATAGCAAATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
82156537 G-AGATCCAAGAT
66 GCAGATCCAAGAT
* * * *
82156549 GATTTGGCATCTTTGTATTAGACGGGGACCAGATCGAAGACACAGTAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
82156614 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* * *
82156627 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAACAGAT-TGGACATTCATTGA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCT-GACCTTCATTGA
*
82156691 AGCAAATCCAAGAT
65 AGCAGATCCAAGAT
* *
82156705 GATTTGGCATCTCTGTATTAGAC-GGGAGCAGATAGAAGACATAACAGAT-TAGACCTTCATTGA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCT-GACCTTCATTGA
*
82156768 AGTAGATCCAAGAT
65 AGCAGATCCAAGAT
* * *
82156782 GATTTGGCATCTCTGTATTAGATGGGGAGTAGATCGAAGACATAGTAGATCTGACCTTCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCA
82156842 CGTGTTTACC
Statistics
Matches: 260, Mismatches: 29, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
77 128 0.49
78 131 0.50
79 1 0.00
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.26
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:82156734 original size:441 final size:441
Alignment explanation
Indices: 82156108--82157401 Score: 1905
Period size: 441 Copynumber: 2.9 Consensus size: 441
82156098 CGAAGAAACA
* * *
82156108 GATTTGGCATCTCCATATTCGACAGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCCATATTAGACGGAGACCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
* * *
82156173 GTAGATCCAAGATGATTTGGCATCTCTGTATTAGAC-GGGAGCATATCGAATACACAGCAGATCT
66 GCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGCAGATCT
82156237 AACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAG
131 AACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGAC-GGGAGCAGATCGAAG
* *
82156302 ACATAACAGATTGGACCTTCATTGAAGCACATCCAAGATGATTTGGCATCTCTATATTAGATGGG
195 ACATAACAGATTGGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGATGGG
*
82156367 GAGCAGATCGAAGACATAGTAGTTCTGACCTTCACGTGTTTACGCTGAAGCAGATCTAAGATAAT
260 GAGCAGATCGAAGACATAGTAGATCTGACCTTCACGTGTTTAC-CTGAAGCAGATCTAAGATAAT
*
82156432 TTGGCATCTCTGTACTGTCAGAGAACAAATCAAAGAAACAGATTTGGCATCTCCATATTCGATGG
324 TTGGCATCTCTGTACTGTCAGAGAACAAATCAAAGAAACAGATTTGGCATCTCCATATTCGACGG
82156497 AGAGCAGATCGAAGACATAGCAAATCTGACCTTCATTGAAG-AGATCCAAGAT
389 AGAGCAGATCGAAGACATAGCAAATCTGACCTTCATTGAAGCAGATCCAAGAT
*** * * *
82156549 GATTTGGCATCTTTGTATTAGACGGGGACCAGATCGAAGACACAGTAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCCATATTAGACGGAGACCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
* * *
82156614 GCAGATCCAAGATGATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAACAGAT-T
66 GCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGCAGATCT
* * * *
82156678 GGACATTCATTGAAGCAAATCCAAGATGATTTGGCATCTCTGTATTAGACGGGAGCAGATAGAAG
131 -AACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGAGCAGATCGAAG
* *
82156743 ACATAACAGATTAGACCTTCATTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTAGATGGG
195 ACATAACAGATTGGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGATGGG
* *
82156808 GAGTAGATCGAAGACATAGTAGATCTGACCTTCACGTGTTTACCCTGAAGCAGATCTAAGATGAT
260 GAGCAGATCGAAGACATAGTAGATCTGACCTTCACGTGTTTA-CCTGAAGCAGATCTAAGATAAT
* * *
82156873 TTGGCATCTCTGTACTATCAGTGAACAAAT-AGAAGAAACAGATTTGGCGTCTCCATATTCGACG
324 TTGGCATCTCTGTACTGTCAGAGAACAAATCA-AAGAAACAGATTTGGCATCTCCATATTCGACG
* * *
82156937 GAGAGCAGATCAAAGACATAGCAGATCTGACCTTCATTGAAGCAGATCCAATAT
388 GAGAGCAGATCGAAGACATAGCAAATCTGACCTTCATTGAAGCAGATCCAAGAT
* * ** * *
82156991 GATTTGGCATCTCCATATTCGATGGAGAGTAGATCGAAGACATAGCAAATCTGACCTTTATTGAA
1 GATTTGGCATCTCCATATTAGACGGAGACCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
*
82157056 GCAGATCCAAGATGATTTGGCATCTTTGTATTAGACGGGGAGCAGATCGAAGACACAGCAGATCT
66 GCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGCAGATCT
*
82157121 AACCTTCATTGAAGCAGATCCAAGATAATTTGGCATCTCTGTATTAGACGGAGAGCAGATCGAAG
131 AACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGG-GAGCAGATCGAAG
*
82157186 ACATAACAGATTGGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGG
195 ACATAACAGATTGGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGATGGG
* * * * * *
82157251 GAGCAGATCGAAAACATAGCAGATCTGACCTTCATGTGTTTACATCGAAGCAAATCCAAGATGAC
260 GAGCAGATCGAAGACATAGTAGATCTGACCTTCACGTGTTTACCT-GAAGCAGATCTAAGAT---
* * * * * **
82157316 AGATTTGGCATCTCTGTATTAGAT-GGGGAGCAAATCAGAGATAACAGATTTGGCATCTCTGTAT
321 A-ATTTGGCATCTCTGTACT-G-TCAGAGAACAAATCAAAGA-AACAGATTTGGCATCTCCATAT
* * *
82157380 TAGACGGGGAGCAGATTGAAGA
382 TCGACGGAGAGCAGATCGAAGA
82157402 AGCAGATTTG
Statistics
Matches: 759, Mismatches: 78, Indels: 24
0.88 0.09 0.03
Matches are distributed among these distances:
440 1 0.00
441 324 0.43
442 240 0.32
443 127 0.17
447 17 0.02
448 11 0.01
449 39 0.05
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (441 bp):
GATTTGGCATCTCCATATTAGACGGAGACCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
GCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGCAGATCT
AACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGAGCAGATCGAAGA
CATAACAGATTGGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGATGGGG
AGCAGATCGAAGACATAGTAGATCTGACCTTCACGTGTTTACCTGAAGCAGATCTAAGATAATTT
GGCATCTCTGTACTGTCAGAGAACAAATCAAAGAAACAGATTTGGCATCTCCATATTCGACGGAG
AGCAGATCGAAGACATAGCAAATCTGACCTTCATTGAAGCAGATCCAAGAT
Found at i:82156760 original size:155 final size:155
Alignment explanation
Indices: 82156472--82156825 Score: 507
Period size: 155 Copynumber: 2.3 Consensus size: 155
82156462 CAAAGAAACA
* * * * *
82156472 GATTTGGCATCTCCATATTCGATGGAGAGCAGATCGAAGACATAGCAAATCTGACCTTCATTGAA
1 GATTTGGCATCTCTATATTAGATGGGGAGCAGATCGAAGACATAACAAATCTGACATTCATTGAA
* * * **
82156537 GAGATCCAAGATGATTTGGCATCTTTGTATTAGACGGGGACCAGATCGAAGACACAGTAGATCTG
66 GAAATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGACCAGATAGAAGACACAACAGATCTG
82156602 ACCTTCATTGAAGCAGATCCAAGAT
131 ACCTTCATTGAAGCAGATCCAAGAT
* *
82156627 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAACAGAT-TGGACATTCATTGA
1 GATTTGGCATCTCTATATTAGATGGGGAGCAGATCGAAGACATAACAAATCT-GACATTCATTGA
* *
82156691 AGCAAATCCAAGATGATTTGGCATCTCTGTATTAGAC-GGGAGCAGATAGAAGACATAACAGAT-
65 AG-AAATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGACCAGATAGAAGACACAACAGATC
*
82156754 TAGACCTTCATTGAAGTAGATCCAAGAT
129 T-GACCTTCATTGAAGCAGATCCAAGAT
* *
82156782 GATTTGGCATCTCTGTATTAGATGGGGAGTAGATCGAAGACATA
1 GATTTGGCATCTCTATATTAGATGGGGAGCAGATCGAAGACATA
82156826 GTAGATCTGA
Statistics
Matches: 178, Mismatches: 18, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
154 2 0.01
155 144 0.81
156 32 0.18
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.26
Consensus pattern (155 bp):
GATTTGGCATCTCTATATTAGATGGGGAGCAGATCGAAGACATAACAAATCTGACATTCATTGAA
GAAATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGACCAGATAGAAGACACAACAGATCTG
ACCTTCATTGAAGCAGATCCAAGAT
Found at i:82156919 original size:364 final size:356
Alignment explanation
Indices: 82156047--82157196 Score: 1180
Period size: 364 Copynumber: 3.2 Consensus size: 356
82156037 CGTGTTTACG
* * * * * *
82156047 TTGAAGCAGATCTAAGATGATTTGGCATCTCTGTACT-G-TCAGAGAACAAATCGAAGA-A-ACA
1 TTGAAGCAGATCCAAGATAATTTGGCATCTCTGTATTAGAT-GGAGAGCAGATCGAAGACATACA
* * * ** * *
82156108 GATTTGGCATCTCCATATTCGACAGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
65 GATCTGACATCTCCATATTCCATGGAGAGCAGATCGAAGACATAGCAAATCTGACCTTCAGTGAA
* * * * * *
82156173 GTAGATCCAAGATGATTTGGCATCTCTGTATTAGAC-GGGAGCATATCGAATACACAGCAGATCT
130 -CAAATACAAGAAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGCAGATCT
* *
82156237 AACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAG
194 GACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAG
* * *
82156302 ACATAACAGATTGGACCTTCATTGAAGCACATCCAAGATGATTTGGCATCTCTATATTAGATGGG
259 ACATAACAGATTGGACCTTCATTGAAGCAAATCCAAGATGATTTGGCATCTCTGTATTAGA-CGG
* *
82156367 GAGCAGATCGAAGACATAGTAG-TTCTGACCTTCA
323 GAGCAGATCGAAGACATAGCAGATT-AGACCTTCA
* * * * * *
82156401 CGTGTTTACGCTGAAGCAGATCTAAGATAATTTGGCATCTCTGTACT-G-TCAGAGAACAAATCA
1 ------T----TGAAGCAGATCCAAGATAATTTGGCATCTCTGTATTAGAT-GGAGAGCAGATCG
* * *
82156464 AAGA-A-ACAGATTTGGCATCTCCATATTCGATGGAGAGCAGATCGAAGACATAGCAAATCTGAC
55 AAGACATACAGATCTGACATCTCCATATTCCATGGAGAGCAGATCGAAGACATAGCAAATCTGAC
* * * * * * *
82156527 CTTCATTGAAGAGATCCAAGATGATTTGGCATCTTTGTATTAGACGGGGACCAGATCGAAGACAC
120 CTTCAGTGAACAAATACAAGAAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACAC
*
82156592 AGTAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTATATTAGACGGGGAGC
185 AGCAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTATATTAGACGGGGAGC
*
82156657 AGATCGAAGACATAACAGATTGGACATTCATTGAAGCAAATCCAAGATGATTTGGCATCTCTGTA
250 AGATCGAAGACATAACAGATTGGACCTTCATTGAAGCAAATCCAAGATGATTTGGCATCTCTGTA
* *
82156722 TTAGACGGGAGCAGATAGAAGACATAACAGATTAGACCTTCA
315 TTAGACGGGAGCAGATCGAAGACATAGCAGATTAGACCTTCA
* * * * *
82156764 TTGAAGTAGATCCAAGATGATTTGGCATCTCTGTATTAGATGGGGAGTAGATCGAAGACATAGTA
1 TTGAAGCAGATCCAAGATAATTTGGCATCTCTGTATTAGATGGAGAGCAGATCGAAGACATA-CA
* * * * * * * **
82156829 GATCTGACCT-TCACGTGTTTACCCT-GA-AGCAGATCTAAGATGATTTGGCATCTCTGTA-CTA
65 GATCTGACATCTC-CAT-ATT-CCATGGAGAGCAGATCGAAGA-CA--TAGCAAATCTG-ACCT-
* * ** * * *
82156890 TCAGTGAACAAATAGAAGAAACAGATTTGGCGTCTCCATATTCGACGGAGAGCAGATCAAAGACA
122 TCAGTGAACAAATACAAG--A-AGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACA
* * * * * *
82156955 TAGCAGATCTGACCTTCATTGAAGCAGATCCAATATGATTTGGCATCTCCATATTCGATGGAGAG
184 CAGCAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTATATTAGACGGGGAG
* * * * * *
82157020 TAGATCGAAGACATAGCAAATCT-GACCTTTATTGAAGCAGATCCAAGATGATTTGGCATCTTTG
249 CAGATCGAAGACATAACAGAT-TGGACCTTCATTGAAGCAAATCCAAGATGATTTGGCATCTCTG
*
82157084 TATTAGACGGGGAGCAGATCGAAGACACAGCAGATCTA-ACCTTCA
313 TATTAGAC-GGGAGCAGATCGAAGACATAGCAGAT-TAGACCTTCA
*
82157129 TTGAAGCAGATCCAAGATAATTTGGCATCTCTGTATTAGACGGAGAGCAGATCGAAGACATAACA
1 TTGAAGCAGATCCAAGATAATTTGGCATCTCTGTATTAGATGGAGAGCAGATCGAAGACAT-ACA
82157194 GAT
65 GAT
82157197 TGGACCTTCA
Statistics
Matches: 683, Mismatches: 81, Indels: 47
0.84 0.10 0.06
Matches are distributed among these distances:
353 32 0.05
354 12 0.02
355 2 0.00
356 3 0.00
357 23 0.03
358 5 0.01
359 2 0.00
360 11 0.02
361 14 0.02
363 63 0.09
364 422 0.62
365 91 0.13
366 3 0.00
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (356 bp):
TTGAAGCAGATCCAAGATAATTTGGCATCTCTGTATTAGATGGAGAGCAGATCGAAGACATACAG
ATCTGACATCTCCATATTCCATGGAGAGCAGATCGAAGACATAGCAAATCTGACCTTCAGTGAAC
AAATACAAGAAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGCAGATCTGA
CCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGAC
ATAACAGATTGGACCTTCATTGAAGCAAATCCAAGATGATTTGGCATCTCTGTATTAGACGGGAG
CAGATCGAAGACATAGCAGATTAGACCTTCA
Found at i:82157011 original size:78 final size:78
Alignment explanation
Indices: 82156913--82157285 Score: 541
Period size: 78 Copynumber: 4.8 Consensus size: 78
82156903 AGAAGAAACA
* ** * *
82156913 GATTTGGCGTCTCCATATTCGACGGAGAGCAGATCAAAGACATAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
*
82156978 GCAGATCCAATAT
66 GCAGATCCAAGAT
** * * * * *
82156991 GATTTGGCATCTCCATATTCGATGGAGAGTAGATCGAAGACATAGCAAATCTGACCTTTATTGAA
1 GATTTGGCATCTCTGTATTAGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
82157056 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* * * *
82157069 GATTTGGCATCTTTGTATTAGACGGGGAGCAGATCGAAGACACAGCAGATCTAACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
82157134 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* *
82157147 AATTTGGCATCTCTGTATTAGACGGAGAGCAGATCGAAGACATAACAGAT-TGGACCTTCATTGA
1 GATTTGGCATCTCTGTATTAGACGGAGAGCAGATCGAAGACATAGCAGATCT-GACCTTCATTGA
82157211 AGCAGATCCAAGAT
65 AGCAGATCCAAGAT
* *
82157225 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAAACATAGCAGATCTGACCTTCAT
1 GATTTGGCATCTCTGTATTAGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCAT
82157286 GTGTTTACAT
Statistics
Matches: 265, Mismatches: 28, Indels: 4
0.89 0.09 0.01
Matches are distributed among these distances:
77 1 0.00
78 263 0.99
79 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.25
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:82157350 original size:45 final size:45
Alignment explanation
Indices: 82157225--82157491 Score: 290
Period size: 45 Copynumber: 5.9 Consensus size: 45
82157215 GATCCAAGAT
* *
82157225 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAAACATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATC--AAAGATAACA
* * * * * * * * *
82157272 GATCTGACCT-TCATGTGTTTACATC--GAAGCAAATCCAAGATGACA
1 GATTTGGCATCTC-TGT-ATTAGA-CGGGGAGCAGATCAAAGATAACA
* * *
82157317 GATTTGGCATCTCTGTATTAGATGGGGAGCAAATCAGAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGATAACA
** *
82157362 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAGA-AGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGATAACA
82157406 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGATAACA
* *
82157451 AATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCAAAGAT
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGAT
82157492 TGCTGATATT
Statistics
Matches: 181, Mismatches: 32, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
44 45 0.25
45 109 0.60
46 4 0.02
47 18 0.10
48 4 0.02
49 1 0.01
ACGTcount: A:0.32, C:0.16, G:0.27, T:0.25
Consensus pattern (45 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGATAACA
Found at i:82157466 original size:89 final size:89
Alignment explanation
Indices: 82157315--82157484 Score: 295
Period size: 89 Copynumber: 1.9 Consensus size: 89
82157305 TCCAAGATGA
* * *
82157315 CAGATTTGGCATCTCTGTATTAGATGGGGAGCAAATCAGAGATAACAGATTTGGCATCTCTGTAT
1 CAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCAAAGATAACAAATTTGGCATCTCTGTAT
82157380 TAGACGGGGAGCAGATTGAAGAAG
66 TAGACGGGGAGCAGATTGAAGAAG
* *
82157404 CAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGATAACAAATTTGGCGTCTCTGTAT
1 CAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCAAAGATAACAAATTTGGCATCTCTGTAT
82157469 TAGACGGGGAGCAGAT
66 TAGACGGGGAGCAGAT
82157485 CAAAGATTGC
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
89 76 1.00
ACGTcount: A:0.31, C:0.15, G:0.29, T:0.26
Consensus pattern (89 bp):
CAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCAAAGATAACAAATTTGGCATCTCTGTAT
TAGACGGGGAGCAGATTGAAGAAG
Found at i:82157478 original size:134 final size:136
Alignment explanation
Indices: 82157225--82157491 Score: 319
Period size: 134 Copynumber: 2.0 Consensus size: 136
82157215 GATCCAAGAT
* *
82157225 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAAACATAGCAGATCTGACCTTCATGTGT
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCG-AAACATAGCAGATCTGACATTCATGTGA
* * * * *
82157290 TTACATCGAAGCAAATCCAAGATGACAGATTTGGCATCTCTGTATTAGATGGGGAGCAAATCAGA
65 TTACATCGAAGCAAATCAAAGATAACAAATTTGGCATCTCTGTATTAGACGGGGAGCAAATCAAA
82157355 GATAACA
130 GATAACA
* * * *
82157362 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATTG-AAGA-AGCAGATTTGGCATCTC-TGT-A
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAACATAGCAGATCTGACAT-TCATGTGA
* * * * *
82157423 TTAGA-CGGGGAGCAGATCAAAGATAACAAATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCA
65 TTACATC--GAAGCAAATCAAAGATAACAAATTTGGCATCTCTGTATTAGACGGGGAGCAAATCA
82157487 AAGAT
128 AAGAT
82157492 TGCTGATATT
Statistics
Matches: 111, Mismatches: 16, Indels: 9
0.82 0.12 0.07
Matches are distributed among these distances:
132 1 0.01
133 4 0.04
134 66 0.59
135 5 0.05
137 35 0.32
ACGTcount: A:0.32, C:0.16, G:0.27, T:0.25
Consensus pattern (136 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAACATAGCAGATCTGACATTCATGTGAT
TACATCGAAGCAAATCAAAGATAACAAATTTGGCATCTCTGTATTAGACGGGGAGCAAATCAAAG
ATAACA
Found at i:82157919 original size:35 final size:37
Alignment explanation
Indices: 82157848--82157945 Score: 132
Period size: 35 Copynumber: 2.7 Consensus size: 37
82157838 ATAATCTTCA
*
82157848 ATGATATGTAATCTTAGATATGATATGCAAGCTTAGAT
1 ATGATA-GCAATCTTAGATATGATATGCAAGCTTAGAT
*
82157886 ATGATA-CAATCTTAGATATGAT-TGCAATCTTAGAT
1 ATGATAGCAATCTTAGATATGATATGCAAGCTTAGAT
82157921 ATGATATGCAATCTTAGA-A-GATATG
1 ATGATA-GCAATCTTAGATATGATATG
82157946 ATTTTGTAAT
Statistics
Matches: 55, Mismatches: 2, Indels: 8
0.85 0.03 0.12
Matches are distributed among these distances:
35 21 0.38
36 18 0.33
37 10 0.18
38 6 0.11
ACGTcount: A:0.38, C:0.09, G:0.17, T:0.36
Consensus pattern (37 bp):
ATGATAGCAATCTTAGATATGATATGCAAGCTTAGAT
Found at i:82157945 original size:17 final size:19
Alignment explanation
Indices: 82157848--82157938 Score: 143
Period size: 19 Copynumber: 4.9 Consensus size: 19
82157838 ATAATCTTCA
*
82157848 ATGATATGTAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
82157867 ATGATATGCAAGCTTAGAT
1 ATGATATGCAATCTTAGAT
82157886 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
82157903 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
82157921 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
82157939 AGATATGATT
Statistics
Matches: 66, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
17 15 0.23
18 16 0.24
19 35 0.53
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:82157964 original size:22 final size:22
Alignment explanation
Indices: 82157848--82157961 Score: 78
Period size: 19 Copynumber: 5.8 Consensus size: 22
82157838 ATAATCTTCA
*
82157848 ATGATATGTAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
*
82157867 ATGATATGCAAGCTTAG---AT
1 ATGATATGCAATCTTAGAAGAT
82157886 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
82157903 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
82157921 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
82157943 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
82157962 GATTTAATTT
Statistics
Matches: 79, Mismatches: 5, Indels: 18
0.77 0.05 0.18
Matches are distributed among these distances:
17 13 0.16
18 16 0.20
19 30 0.38
22 8 0.10
23 12 0.15
ACGTcount: A:0.37, C:0.09, G:0.17, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:82158252 original size:17 final size:17
Alignment explanation
Indices: 82158228--82158262 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
82158218 TGTTTCCCTG
*
82158228 ATTTTTTTATATATTTTA
1 ATTTTTTAATA-ATTTTA
82158246 ATTTTTTAATAATTTTA
1 ATTTTTTAATAATTTTA
82158263 GTATCATATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
ATTTTTTAATAATTTTA
Found at i:82165338 original size:22 final size:21
Alignment explanation
Indices: 82165307--82165352 Score: 58
Period size: 24 Copynumber: 2.1 Consensus size: 21
82165297 ATTTAATTAT
82165307 TTTG-TTTTTTATTTATATAAA
1 TTTGTTTTTTTATTTATA-AAA
82165328 TTTGTTATTTTTTATTTATAAAA
1 TTTG-T-TTTTTTATTTATAAAA
82165351 TT
1 TT
82165353 GGCATAATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 4 0.18
23 5 0.23
24 13 0.59
ACGTcount: A:0.28, C:0.00, G:0.04, T:0.67
Consensus pattern (21 bp):
TTTGTTTTTTTATTTATAAAA
Found at i:82168285 original size:70 final size:71
Alignment explanation
Indices: 82168211--82168350 Score: 160
Period size: 72 Copynumber: 2.0 Consensus size: 71
82168201 AAAGGGAATT
* *
82168211 GTTTTATA-TA-ATGAATGCATGCGCAAATGTTAT-TATAAATAATATATGTACATAACTTTGCA
1 GTTTTATATTATATGAATGCATGCG--AAGGTTATATATAAAAAATATATGTACATAACTTTGCA
82168273 TTAAAAGG
64 TTAAAAGG
* * ** * *
82168281 GTTTTGTATTATATGTATGCATGCGTGGGTTATAATATAAAAAATATATTTACATACCTTTGCAT
1 GTTTTATATTATATGAATGCATGCGAAGGTTAT-ATATAAAAAATATATGTACATAACTTTGCAT
82168346 TAAAA
65 TAAAA
82168351 ATTTTTGTTC
Statistics
Matches: 58, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
70 12 0.21
71 2 0.03
72 44 0.76
ACGTcount: A:0.38, C:0.09, G:0.14, T:0.39
Consensus pattern (71 bp):
GTTTTATATTATATGAATGCATGCGAAGGTTATATATAAAAAATATATGTACATAACTTTGCATT
AAAAGG
Found at i:82170918 original size:26 final size:26
Alignment explanation
Indices: 82170880--82170961 Score: 137
Period size: 26 Copynumber: 3.2 Consensus size: 26
82170870 TGATACAAAT
*
82170880 TGATAATGAGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
82170906 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
82170932 TGATAATGGGTTAGGTAAATGCTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
82170958 TGAT
1 TGAT
82170962 GGGAATTTCA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.32, C:0.07, G:0.26, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:82172480 original size:26 final size:26
Alignment explanation
Indices: 82172451--82172502 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
82172441 TACAGTTTTA
82172451 CCCTAGTAGTTAAATT-ACCGAAATAC
1 CCCTAG-AGTTAAATTGACCGAAATAC
* *
82172477 CCCTAGGGTTAAATTGACCTAAATAC
1 CCCTAGAGTTAAATTGACCGAAATAC
82172503 ATGTTTGACT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 8 0.35
26 15 0.65
ACGTcount: A:0.37, C:0.23, G:0.13, T:0.27
Consensus pattern (26 bp):
CCCTAGAGTTAAATTGACCGAAATAC
Found at i:82175533 original size:11 final size:11
Alignment explanation
Indices: 82175517--82175548 Score: 50
Period size: 10 Copynumber: 3.1 Consensus size: 11
82175507 TCATAAACAT
82175517 ATAAAATATAA
1 ATAAAATATAA
82175528 ATAAAATA-AA
1 ATAAAATATAA
82175538 ATAAAA-ATAA
1 ATAAAATATAA
82175548 A
1 A
82175549 GATATTTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
9 1 0.05
10 11 0.55
11 8 0.40
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (11 bp):
ATAAAATATAA
Found at i:82175536 original size:16 final size:16
Alignment explanation
Indices: 82175517--82175548 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
82175507 TCATAAACAT
*
82175517 ATAAAATATAAATAAA
1 ATAAAATAAAAATAAA
82175533 ATAAAATAAAAATAAA
1 ATAAAATAAAAATAAA
82175549 GATATTTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (16 bp):
ATAAAATAAAAATAAA
Found at i:82175867 original size:65 final size:68
Alignment explanation
Indices: 82175798--82175927 Score: 160
Period size: 68 Copynumber: 2.0 Consensus size: 68
82175788 TTGGTAAAAT
* *
82175798 ATATAACATATAATAAAAT-T-TATAA-ACAAAATATAATAATATA-AATAATATGATAGATAAT
1 ATAT-ACATATAATAAAATGTATATAATACAAAATATAATAATATATAATAATATAATAAATAAT
82175859 AATA
65 AATA
* * * * *
82175863 ATATATATATAGTAAAATGTATGTAATATAATATATAATAATATATAATAATATAATAAATAATA
1 ATATACATATAATAAAATGTATATAATACAAAATATAATAATATATAATAATATAATAAATAATA
82175928 TACAAAGATA
Statistics
Matches: 54, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
64 12 0.22
65 5 0.09
66 4 0.07
67 16 0.30
68 17 0.31
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (68 bp):
ATATACATATAATAAAATGTATATAATACAAAATATAATAATATATAATAATATAATAAATAATA
ATA
Found at i:82175905 original size:10 final size:10
Alignment explanation
Indices: 82175890--82175929 Score: 62
Period size: 10 Copynumber: 3.8 Consensus size: 10
82175880 TGTATGTAAT
82175890 ATAATATATA
1 ATAATATATA
82175900 ATAATATATA
1 ATAATATATA
82175910 ATAATATAATAA
1 ATAATAT-AT-A
82175922 ATAATATA
1 ATAATATA
82175930 CAAAGATAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
10 17 0.61
11 3 0.11
12 8 0.29
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (10 bp):
ATAATATATA
Found at i:82175938 original size:25 final size:25
Alignment explanation
Indices: 82175886--82175938 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
82175876 AAAATGTATG
* * *
82175886 TAATATAATATATAATAATATATAA
1 TAATATAATAAATAATAATACAAAA
82175911 TAATATAATAAATAAT-ATACAAAGA
1 TAATATAATAAATAATAATACAAA-A
82175936 TAA
1 TAA
82175939 ATACTATATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (25 bp):
TAATATAATAAATAATAATACAAAA
Found at i:82179423 original size:16 final size:17
Alignment explanation
Indices: 82179384--82179434 Score: 50
Period size: 16 Copynumber: 3.0 Consensus size: 17
82179374 AGGTTAATAT
82179384 TATTATATTATTAATAAA
1 TATT-TATTATTAATAAA
* *
82179402 TTTTTATTTTTAA-AAA
1 TATTTATTATTAATAAA
**
82179418 TATTTAAAATTAATAAA
1 TATTTATTATTAATAAA
82179435 ATACTATAAT
Statistics
Matches: 26, Mismatches: 6, Indels: 3
0.74 0.17 0.09
Matches are distributed among these distances:
16 12 0.46
17 11 0.42
18 3 0.12
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
TATTTATTATTAATAAA
Done.