Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 238 of 295
Found at i:82183238 original size:25 final size:24
Alignment explanation
Indices: 82183205--82183275 Score: 70
Period size: 25 Copynumber: 2.8 Consensus size: 24
82183195 ATTTTTCATA
* **
82183205 TATTGTTATTTATATTATTTTAACCT
1 TATT-TTATTTATA-TATTATAAAAT
82183231 TATTTTATATTATATATTATAAAAT
1 TATTTTAT-TTATATATTATAAAAT
*
82183256 TATTTTATTATAAATATTAT
1 TATTTTATT-TATATATTAT
82183276 TATATATATT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
24 1 0.03
25 29 0.74
26 9 0.23
ACGTcount: A:0.37, C:0.03, G:0.01, T:0.59
Consensus pattern (24 bp):
TATTTTATTTATATATTATAAAAT
Found at i:82183266 original size:16 final size:17
Alignment explanation
Indices: 82183245--82183276 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
82183235 TTATATTATA
82183245 TATTATAAA-ATTATTT
1 TATTATAAATATTATTT
82183261 TATTATAAATATTATT
1 TATTATAAATATTATT
82183277 ATATATATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
TATTATAAATATTATTT
Found at i:82183277 original size:12 final size:12
Alignment explanation
Indices: 82183260--82183290 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
82183250 TAAAATTATT
82183260 TTATTATAAATA
1 TTATTATAAATA
*
82183272 TTATTATATATA
1 TTATTATAAATA
82183284 TTATTAT
1 TTATTAT
82183291 TGTAGCACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (12 bp):
TTATTATAAATA
Found at i:82184239 original size:27 final size:28
Alignment explanation
Indices: 82184202--82184341 Score: 184
Period size: 27 Copynumber: 5.2 Consensus size: 28
82184192 AGCATGGCTG
* *
82184202 CCAGA-ACAGATA-ATGTGACAGAGTCA
1 CCAGATACAGATATATGTGGCAGAGCCA
82184228 CCAGATACAGATA-ATCGTGGCAGAGCCA
1 CCAGATACAGATATAT-GTGGCAGAGCCA
82184256 CCAGA-ACAGATATATGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
*
82184283 CCAGAT-CAGATATTTGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
* *
82184310 CCAGAT-CAGATATTTGTGGCATAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
82184337 CCAGA
1 CCAGA
82184342 ACGCTTCCTC
Statistics
Matches: 106, Mismatches: 4, Indels: 7
0.91 0.03 0.06
Matches are distributed among these distances:
26 5 0.05
27 84 0.79
28 17 0.16
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (28 bp):
CCAGATACAGATATATGTGGCAGAGCCA
Found at i:82185776 original size:26 final size:26
Alignment explanation
Indices: 82185740--82185875 Score: 218
Period size: 26 Copynumber: 5.2 Consensus size: 26
82185730 CATGAAATTC
*
82185740 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
* * *
82185766 TTATCATGAAACATCTACCCAACCCA
1 TTATCATGAAACATTTACCTAACCTA
*
82185792 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
*
82185818 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
82185844 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
82185870 TTATCA
1 TTATCA
82185876 ATTTGTATCA
Statistics
Matches: 103, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 103 1.00
ACGTcount: A:0.37, C:0.26, G:0.05, T:0.32
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCTA
Found at i:82186267 original size:20 final size:21
Alignment explanation
Indices: 82186244--82186288 Score: 51
Period size: 20 Copynumber: 2.2 Consensus size: 21
82186234 TCTCAAATTA
82186244 TTATTATT-TTAC-ATCATTTT
1 TTATTATTATTACTAT-ATTTT
82186264 TTA-TATTATTACTATATTTT
1 TTATTATTATTACTATATTTT
*
82186284 ATATT
1 TTATT
82186289 TACTAATTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 5
0.78 0.04 0.19
Matches are distributed among these distances:
19 4 0.19
20 14 0.67
21 3 0.14
ACGTcount: A:0.29, C:0.07, G:0.00, T:0.64
Consensus pattern (21 bp):
TTATTATTATTACTATATTTT
Found at i:82186563 original size:4 final size:4
Alignment explanation
Indices: 82186554--82186578 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
82186544 ACACATTTCA
82186554 TTAT TTAT TTAT TTAT TTAT TTAT T
1 TTAT TTAT TTAT TTAT TTAT TTAT T
82186579 ATATACTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTAT
Found at i:82192330 original size:14 final size:14
Alignment explanation
Indices: 82192325--82192372 Score: 55
Period size: 14 Copynumber: 3.5 Consensus size: 14
82192315 AAAAAAAGAG
82192325 AAAAAAA-AG-AAA
1 AAAAAAAGAGAAAA
*
82192337 AGAAAAAGAGAAAA
1 AAAAAAAGAGAAAA
*
82192351 AAATAAAGAGAAAA
1 AAAAAAAGAGAAAA
82192365 AAGAAAAA
1 AA-AAAAA
82192373 AAATGGAGAG
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
12 6 0.21
13 2 0.07
14 17 0.59
15 4 0.14
ACGTcount: A:0.83, C:0.00, G:0.15, T:0.02
Consensus pattern (14 bp):
AAAAAAAGAGAAAA
Found at i:82192373 original size:22 final size:21
Alignment explanation
Indices: 82192312--82192376 Score: 78
Period size: 21 Copynumber: 3.0 Consensus size: 21
82192302 TTCTATTTCA
* *
82192312 AAAAAAAAAAGAGAAAAAAAAG
1 AAAAGAAAAA-AGAAAAAAAAT
82192334 AAAAG-AAAAAGAGAAAAAAAT
1 AAAAGAAAAAAGA-AAAAAAAT
82192355 AAAGAGAAAAAAGAAAAAAAAT
1 AAA-AGAAAAAAGAAAAAAAAT
82192377 GGAGAGGCCA
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
20 3 0.08
21 14 0.37
22 14 0.37
23 7 0.18
ACGTcount: A:0.83, C:0.00, G:0.14, T:0.03
Consensus pattern (21 bp):
AAAAGAAAAAAGAAAAAAAAT
Found at i:82192382 original size:22 final size:23
Alignment explanation
Indices: 82192316--82192382 Score: 84
Period size: 22 Copynumber: 3.0 Consensus size: 23
82192306 ATTTCAAAAA
* *
82192316 AAAAAAGAGAAAAAAAAGAAAAG
1 AAAAAAGAGAAAAAAATGAAGAG
*
82192339 -AAAAAGAGAAAAAAATAAAGAG
1 AAAAAAGAGAAAAAAATGAAGAG
*
82192361 AAAAAAGA-AAAAAAATGGAGAG
1 AAAAAAGAGAAAAAAATGAAGAG
82192383 GCCAAGGTGA
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
22 31 0.82
23 7 0.18
ACGTcount: A:0.78, C:0.00, G:0.19, T:0.03
Consensus pattern (23 bp):
AAAAAAGAGAAAAAAATGAAGAG
Found at i:82193306 original size:44 final size:44
Alignment explanation
Indices: 82193253--82193434 Score: 167
Period size: 44 Copynumber: 4.1 Consensus size: 44
82193243 CAAAGAAACA
* * *
82193253 AGATTTGACATCCCTATGTTTATAGGGAACAGATCGAAGATAGT
1 AGATCTGACATCCCTGTGTTTATAGGGAACAGATTGAAGATAGT
* * * * *
82193297 AGATCTGACATTCCTGTGCTCTCT-GCGAAGCAGATTGAAGAT-TT
1 AGATCTGACATCCCTGTG-TTTATAGGGAA-CAGATTGAAGATAGT
* *
82193341 CAG--CATGGCATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGC
1 -AGATC-TGACATCCCTGTGTTTATAGGGAACAGA-TTGAAGATAGT
* * *
82193385 AGATTTGGCATCCCTGTGCTTATAGGGAACAGATTGAAGATAGT
1 AGATCTGACATCCCTGTGTTTATAGGGAACAGATTGAAGATAGT
82193429 AGATCT
1 AGATCT
82193435 AACCTTCAGA
Statistics
Matches: 109, Mismatches: 19, Indels: 20
0.74 0.13 0.14
Matches are distributed among these distances:
42 1 0.01
43 16 0.15
44 75 0.69
45 17 0.16
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (44 bp):
AGATCTGACATCCCTGTGTTTATAGGGAACAGATTGAAGATAGT
Found at i:82194017 original size:119 final size:119
Alignment explanation
Indices: 82193421--82194005 Score: 972
Period size: 119 Copynumber: 4.9 Consensus size: 119
82193411 GAACAGATTG
* *
82193421 AAGATAGTAGATCTAACCTTCAGATGTTTACACTGAAGCAGATCCAAGATGATTTGGCATTCTTG
1 AAGATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTG
* *
82193486 TGTTTACAAGGAACATATCGAGGACATAACAGATTTGACTCTCAGACGTTCTCA
66 TGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCA
82193540 AAGATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTG
1 AAGATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTG
82193605 TGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCA
66 TGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCA
* * * *
82193659 AATATAGAAGATCTAACCTTCAGATGTTTACACTGAAGCAGATCCAAGATGATTTGGTATTCTTG
1 AAGATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTG
* *
82193724 TGTTTACAAGAAACAAATCGCGGACATAGCAGATTTGACTCTCAGACGTTCTCA
66 TGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCA
* * *
82193778 AATATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGTCATTCTTT
1 AAGATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTG
*
82193843 TGTTTACAAGGAACAAATTGAGGACATAGCAGATTTGACTCTCAGACGTTCTCA
66 TGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCA
* * * *
82193897 AAGATAGCAGATCTAACCTTCAGATGTTTATGCTGAAGTAGATCCAAGATGGTTTGGCATCCTTG
1 AAGATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTG
* * * *
82193962 TGCTTACAAGGAACAAATTGAGGACATTGCAGATATGACTCTCA
66 TGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCA
82194006 AATATTCTCA
Statistics
Matches: 438, Mismatches: 28, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
119 438 1.00
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30
Consensus pattern (119 bp):
AAGATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTG
TGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCA
Found at i:82194080 original size:83 final size:83
Alignment explanation
Indices: 82193941--82194437 Score: 746
Period size: 83 Copynumber: 6.1 Consensus size: 83
82193931 GAAGTAGATC
*
82193941 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATTGAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
82194006 AATATTCTCAAACAGACT
66 AATATTCTCAAACAGACT
82194024 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
* * * *
82194089 AATGTTTTCAAATATACT
66 AATATTCTCAAACAGACT
* *
82194107 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACCTTGCAGACATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
82194172 AA-AGTTCTCAAACAGACT
66 AATA-TTCTCAAACAGACT
*
82194190 CAAGATGTTTTAGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTC
1 CAAGATGGTTT-GGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTC
*
82194255 AAATTTTCTCAAACAGACT
65 AAATATTCTCAAACAGACT
* *
82194274 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACCTTGCAGACATGA----C-
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
82194334 -----TCTCAAACAGACT
66 AATATTCTCAAACAGACT
* * *
82194347 CAAGATGGTTTAGGCATCCTTGTGCTTACAAGGAACAAGTCGAGGACCTTGCAGATATGATTCTC
1 CAAGATGGTTT-GGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTC
* *
82194412 AAATGTTCTCAAACAGATT
65 AAATATTCTCAAACAGACT
82194431 CAAGATG
1 CAAGATG
82194438 ATTTAACATC
Statistics
Matches: 379, Mismatches: 21, Indels: 27
0.89 0.05 0.06
Matches are distributed among these distances:
73 24 0.06
74 46 0.12
78 1 0.00
79 1 0.00
83 210 0.55
84 97 0.26
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (83 bp):
CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
AATATTCTCAAACAGACT
Found at i:82194292 original size:167 final size:166
Alignment explanation
Indices: 82193941--82194437 Score: 791
Period size: 167 Copynumber: 3.0 Consensus size: 166
82193931 GAAGTAGATC
* * *
82193941 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATTGAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACCTTGCAGACATGACTCTCA
82194006 AATATTCTCAAACAGACTCAAGATGGTTT-GGCATCCTTGTGCTTACAAGGAACAAATCGAGGAC
66 AA-ATTCTCAAACAGACTCAAGATGGTTTAGGCATCCTTGTGCTTACAAGGAACAAATCGAGGAC
* *
82194070 ATTGCAGATATGACTCTCAAATGTTT-TCAAATATACT
130 ATTGCAGATATGACTCTCAAAT-TTTCTCAAACAGACT
82194107 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACCTTGCAGACATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACCTTGCAGACATGACTCTCA
*
82194172 AAAGTTCTCAAACAGACTCAAGATGTTTTAGGCATCCTTGTGCTTACAAGGAACAAATCGAGGAC
66 AAA-TTCTCAAACAGACTCAAGATGGTTTAGGCATCCTTGTGCTTACAAGGAACAAATCGAGGAC
82194237 ATTGCAGATATGACTCTCAAATTTTCTCAAACAGACT
130 ATTGCAGATATGACTCTCAAATTTTCTCAAACAGACT
82194274 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACCTTGCAGACATGA----C-
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACCTTGCAGACATGACTCTCA
* *
82194334 ----TCTCAAACAGACTCAAGATGGTTTAGGCATCCTTGTGCTTACAAGGAACAAGTCGAGGACC
66 AAATTCTCAAACAGACTCAAGATGGTTTAGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACA
* * *
82194395 TTGCAGATATGATTCTCAAATGTTCTCAAACAGATT
131 TTGCAGATATGACTCTCAAATTTTCTCAAACAGACT
82194431 CAAGATG
1 CAAGATG
82194438 ATTTAACATC
Statistics
Matches: 316, Mismatches: 12, Indels: 15
0.92 0.03 0.04
Matches are distributed among these distances:
157 98 0.31
163 1 0.00
165 1 0.00
166 91 0.29
167 125 0.40
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (166 bp):
CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACCTTGCAGACATGACTCTCA
AAATTCTCAAACAGACTCAAGATGGTTTAGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACA
TTGCAGATATGACTCTCAAATTTTCTCAAACAGACT
Found at i:82194423 original size:74 final size:73
Alignment explanation
Indices: 82194261--82194414 Score: 272
Period size: 74 Copynumber: 2.1 Consensus size: 73
82194251 TCTCAAATTT
82194261 TCTCAAACAGACTCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACCTTGCA
1 TCTCAAACAGACTCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACCTTGCA
82194326 GACATGAC
66 GACATGAC
*
82194334 TCTCAAACAGACTCAAGATGGTTTAGGCATCCTTGTGCTTACAAGGAACAAGTCGAGGACCTTGC
1 TCTCAAACAGACTCAAGATGGTTT-GGCATCCTTGTGCTTACAAGGAACAAATCGAGGACCTTGC
* *
82194399 AGATATGAT
65 AGACATGAC
82194408 TCTCAAA
1 TCTCAAA
82194415 TGTTCTCAAA
Statistics
Matches: 77, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
73 24 0.31
74 53 0.69
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.25
Consensus pattern (73 bp):
TCTCAAACAGACTCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACCTTGCA
GACATGAC
Found at i:82196013 original size:25 final size:24
Alignment explanation
Indices: 82195980--82196075 Score: 75
Period size: 25 Copynumber: 3.7 Consensus size: 24
82195970 ATTTTTCATA
* **
82195980 TATTGTTATTTATATTATTTTAACCT
1 TATT-TTATTTATA-TATTATAAAAT
82196006 TATTTTATATTATATATTATAAAAT
1 TATTTTAT-TTATATATTATAAAAT
* *
82196031 TATTTTATTATAAATATTATTATATAT
1 TATTTTATT-TATATATTA-TA-AAAT
82196058 TATTATTATTTATTATAT
1 TATT-TTATTTA-TATAT
82196076 ATTATTTTTC
Statistics
Matches: 58, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
24 1 0.02
25 28 0.48
26 11 0.19
27 9 0.16
28 9 0.16
ACGTcount: A:0.36, C:0.02, G:0.01, T:0.60
Consensus pattern (24 bp):
TATTTTATTTATATATTATAAAAT
Found at i:82196021 original size:7 final size:7
Alignment explanation
Indices: 82196006--82196080 Score: 66
Period size: 7 Copynumber: 10.9 Consensus size: 7
82195996 ATTTTAACCT
*
82196006 TATTTTA
1 TATTATA
82196013 TATTATA
1 TATTATA
82196020 TATTATAA
1 TATTAT-A
* *
82196028 AATTATTT
1 TATTA-TA
82196036 TATTATA
1 TATTATA
*
82196043 -AATAT-
1 TATTATA
82196048 TATTATA
1 TATTATA
82196055 TATTAT-
1 TATTATA
*
82196061 TATTATT
1 TATTATA
82196068 TATTATA
1 TATTATA
82196075 TATTAT
1 TATTAT
82196081 TTTTCTCAAA
Statistics
Matches: 55, Mismatches: 8, Indels: 10
0.75 0.11 0.14
Matches are distributed among these distances:
6 14 0.25
7 31 0.56
8 9 0.16
9 1 0.02
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (7 bp):
TATTATA
Found at i:82196041 original size:16 final size:17
Alignment explanation
Indices: 82196020--82196083 Score: 66
Period size: 16 Copynumber: 4.1 Consensus size: 17
82196010 TTATATTATA
82196020 TATTATAAA-ATTATTT
1 TATTATAAATATTATTT
*
82196036 TATTATAAATATTATTA
1 TATTATAAATATTATTT
* *
82196053 TA-TATTATTATTA-TT
1 TATTATAAATATTATTT
82196068 TATTAT--ATATTATTT
1 TATTATAAATATTATTT
82196083 T
1 T
82196084 TCTCAAATTA
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
14 5 0.12
15 6 0.15
16 21 0.52
17 8 0.20
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (17 bp):
TATTATAAATATTATTT
Found at i:82196101 original size:3 final size:3
Alignment explanation
Indices: 82196029--82196081 Score: 54
Period size: 3 Copynumber: 17.0 Consensus size: 3
82196019 ATATTATAAA
* *
82196029 ATT ATT -TT ATT ATA AAT ATT ATT ATAT ATT ATT ATT ATTT ATT ATAT
1 ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT ATT ATT A-TT ATT AT-T
82196076 ATT ATT
1 ATT ATT
82196082 TTTCTCAAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
2 2 0.05
3 31 0.74
4 9 0.21
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:82196117 original size:20 final size:21
Alignment explanation
Indices: 82196094--82196138 Score: 51
Period size: 20 Copynumber: 2.2 Consensus size: 21
82196084 TCTCAAATTA
82196094 TTATTATT-TTAC-ATCATTTT
1 TTATTATTATTACTAT-ATTTT
82196114 TTA-TATTATTACTATATTTT
1 TTATTATTATTACTATATTTT
*
82196134 ATATT
1 TTATT
82196139 TACTAATTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 5
0.78 0.04 0.19
Matches are distributed among these distances:
19 4 0.19
20 14 0.67
21 3 0.14
ACGTcount: A:0.29, C:0.07, G:0.00, T:0.64
Consensus pattern (21 bp):
TTATTATTATTACTATATTTT
Found at i:82200175 original size:22 final size:22
Alignment explanation
Indices: 82200149--82200199 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
82200139 TGCATGTTCG
82200149 AACCTCTTCCATGCATTGTGCA
1 AACCTCTTCCATGCATTGTGCA
* * * *
82200171 AACCTCATCTATGCGTTGTGCG
1 AACCTCTTCCATGCATTGTGCA
82200193 AA-CTCTT
1 AACCTCTT
82200200 AGCATGAATA
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 4 0.17
22 20 0.83
ACGTcount: A:0.22, C:0.29, G:0.16, T:0.33
Consensus pattern (22 bp):
AACCTCTTCCATGCATTGTGCA
Found at i:82203463 original size:23 final size:23
Alignment explanation
Indices: 82203437--82203646 Score: 264
Period size: 23 Copynumber: 9.2 Consensus size: 23
82203427 CAAAGTGCCA
* * *
82203437 CACTGTAATATAGCCGAAGCTAT
1 CACTGTATTGTAGCCGAAGCTAC
** *
82203460 CACTGTAACGTAGCCCAAGCTAC
1 CACTGTATTGTAGCCGAAGCTAC
82203483 CACTGTATTGTAGCCGAAGCTAC
1 CACTGTATTGTAGCCGAAGCTAC
82203506 CACTGTATTGTAGCCGAAGCTAC
1 CACTGTATTGTAGCCGAAGCTAC
* *
82203529 CACTG-AGATGTAGCTGAAGCTAC
1 CACTGTA-TTGTAGCCGAAGCTAC
*
82203552 CACTGTATTGTAGTCGAAGCTAC
1 CACTGTATTGTAGCCGAAGCTAC
* * *
82203575 CACTG-AGATGTAGCTGAATCTAC
1 CACTGTA-TTGTAGCCGAAGCTAC
*
82203598 CACTATATTGTAGCCGAAGCTAC
1 CACTGTATTGTAGCCGAAGCTAC
82203621 CA-TGTATTGTAGCCGAAGCTAC
1 CACTGTATTGTAGCCGAAGCTAC
82203643 CACT
1 CACT
82203647 AAGATGTAGC
Statistics
Matches: 161, Mismatches: 21, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
22 23 0.14
23 136 0.84
24 2 0.01
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.25
Consensus pattern (23 bp):
CACTGTATTGTAGCCGAAGCTAC
Found at i:82208107 original size:19 final size:17
Alignment explanation
Indices: 82208083--82208117 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 17
82208073 TTTTTTAAAA
82208083 TAATTTATGAATTATTTAT
1 TAATTTAT--ATTATTTAT
82208102 TAATTTATATTATTTA
1 TAATTTATATTATTTA
82208118 AATTATTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.50
19 8 0.50
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (17 bp):
TAATTTATATTATTTAT
Found at i:82208122 original size:19 final size:20
Alignment explanation
Indices: 82208070--82208122 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 20
82208060 ACAATTCATG
* *
82208070 TAATTTTTTAAAATAATTTA
1 TAATTATTTAAATTAATTTA
82208090 TGAATTATTT--ATTAATTTA
1 T-AATTATTTAAATTAATTTA
82208109 T-ATTATTTAAATTA
1 TAATTATTTAAATTA
82208123 TTATTTTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
17 7 0.25
19 13 0.46
20 1 0.04
21 7 0.25
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.57
Consensus pattern (20 bp):
TAATTATTTAAATTAATTTA
Found at i:82209171 original size:19 final size:20
Alignment explanation
Indices: 82209126--82209171 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 20
82209116 AGTCAAGCTT
82209126 AATATTATTATATTATTAATA
1 AATATT-TTATATTATTAATA
* *
82209147 AA-ATTTTTTATTTTTAA-A
1 AATATTTTATATTATTAATA
82209165 AATATTT
1 AATATTT
82209172 AAAATTAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
18 3 0.14
19 14 0.64
20 3 0.14
21 2 0.09
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (20 bp):
AATATTTTATATTATTAATA
Found at i:82211323 original size:29 final size:30
Alignment explanation
Indices: 82211291--82211348 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 30
82211281 GTTGTAACTC
*
82211291 TTATAATTATAT-TTATTTTGAA-ATTTTTT
1 TTAT-ATTATATGTTATTATGAATATTTTTT
*
82211320 TTATATTTTATGTTATTATGAATATTTTT
1 TTATATTATATGTTATTATGAATATTTTT
82211349 CATAAACTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 6 0.24
29 13 0.52
30 6 0.24
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.66
Consensus pattern (30 bp):
TTATATTATATGTTATTATGAATATTTTTT
Found at i:82211493 original size:18 final size:18
Alignment explanation
Indices: 82211465--82211515 Score: 50
Period size: 21 Copynumber: 2.7 Consensus size: 18
82211455 AACCAGAAAC
*
82211465 TATTTAATTATTTTGTTT
1 TATTTATTTATTTTGTTT
*
82211483 TTTTTATTTATATAATTGTTT
1 TATTTATTTAT-T--TTGTTT
82211504 TATTT-TTTATTT
1 TATTTATTTATTT
82211516 ATAAAATTGG
Statistics
Matches: 27, Mismatches: 3, Indels: 7
0.73 0.08 0.19
Matches are distributed among these distances:
17 1 0.04
18 9 0.33
19 2 0.07
20 5 0.19
21 10 0.37
ACGTcount: A:0.22, C:0.00, G:0.04, T:0.75
Consensus pattern (18 bp):
TATTTATTTATTTTGTTT
Found at i:82214067 original size:27 final size:27
Alignment explanation
Indices: 82214036--82214213 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
82214026 TAAATTGTAC
*
82214036 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
82214063 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
82214089 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
82214117 GGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
82214144 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * *
82214172 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
82214199 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
82214214 GACTTAATAT
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 105 0.81
28 25 0.19
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:82214097 original size:54 final size:55
Alignment explanation
Indices: 82214036--82214213 Score: 227
Period size: 54 Copynumber: 3.3 Consensus size: 55
82214026 TAAATTGTAC
* **
82214036 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
* * ** *
82214091 -GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTGACTATG-T
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
* *
82214144 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGATTAT-AT
1 AGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
*
82214199 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
82214214 GACTTAATAT
Statistics
Matches: 106, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
53 1 0.01
54 60 0.57
55 45 0.42
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
Found at i:82221977 original size:27 final size:27
Alignment explanation
Indices: 82221947--82222122 Score: 192
Period size: 27 Copynumber: 6.5 Consensus size: 27
82221937 AAATTGTACA
*
82221947 GCACTAAGTGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGAATTGACTATGTT
* * *
82221974 GCACTAAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCGAATTGACTATGTT
* **
82222001 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTT
* *
82222028 GCACTAAGTGTGCGAGTTGACTATGTA
1 GCACTAAGTGTGCGAATTGACTATGTT
* *
82222055 GCACTAAGTGTGCGAGTTTGATTATG-T
1 GCACTAAGTGTGCGA-ATTGACTATGTT
* * * *
82222082 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAATTGACTATGTT
*
82222109 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
82222123 GACTTAATAT
Statistics
Matches: 127, Mismatches: 20, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
26 8 0.06
27 111 0.87
28 8 0.06
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTT
Found at i:82222007 original size:54 final size:54
Alignment explanation
Indices: 82221946--82222122 Score: 225
Period size: 54 Copynumber: 3.3 Consensus size: 54
82221936 TAAATTGTAC
**
82221946 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGATTTGACTATG-TGCACTAAGTGTGCGAGTTGAATATGAT
* * * *
82222001 -GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTGACTATG-T
1 AGCACTAAGTGTGCGATTTGACTATG-TGCACTAAGTGTGCGAGTTGAATATGAT
* *
82222054 AGCACTAAGTGTGCGAGTTTGATTATGTGCACTAAGTGTGCGAGTTGATTAT-AT
1 AGCACTAAGTGTGCGA-TTTGACTATGTGCACTAAGTGTGCGAGTTGAATATGAT
*
82222108 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
82222123 GACTTAATAT
Statistics
Matches: 106, Mismatches: 13, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
53 1 0.01
54 98 0.92
55 7 0.07
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.30
Consensus pattern (54 bp):
AGCACTAAGTGTGCGATTTGACTATGTGCACTAAGTGTGCGAGTTGAATATGAT
Found at i:82222085 original size:81 final size:81
Alignment explanation
Indices: 82221947--82222101 Score: 240
Period size: 81 Copynumber: 1.9 Consensus size: 81
82221937 AAATTGTACA
* *
82221947 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
82222012 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
** *
82222028 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATG-TGCACTAAGTG
1 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGA-AATGAATATGATGCACTAAGTG
*
82222092 TGCGAGTTGA
65 TGCGAATTGA
82222102 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
81 60 0.90
82 7 0.10
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:82222113 original size:81 final size:81
Alignment explanation
Indices: 82221943--82222122 Score: 236
Period size: 81 Copynumber: 2.2 Consensus size: 81
82221933 GATTAAATTG
* *
82221943 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
82222008 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
82222024 TGCGGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATG-TGCACTA
1 TACAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGA-AATGAATATGATGCACTA
* **
82222088 AGTGTGCGAGTTGATTA
65 AGTGTGCGAATTGACCA
* *
82222105 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
82222123 GACTTAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
81 77 0.92
82 7 0.08
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:82225178 original size:22 final size:22
Alignment explanation
Indices: 82225144--82225195 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
82225134 ATTGAACATG
* *
82225144 TGCA-TGTCCAAACCTCTTCCA
1 TGCATTGTGCAAACCTCATCCA
*
82225165 TGCATTGTGCAAACCTCATCTA
1 TGCATTGTGCAAACCTCATCCA
82225187 TGCATTGTG
1 TGCATTGTG
82225196 TGAACTGTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
21 4 0.15
22 23 0.85
ACGTcount: A:0.23, C:0.29, G:0.15, T:0.33
Consensus pattern (22 bp):
TGCATTGTGCAAACCTCATCCA
Found at i:82226297 original size:71 final size:71
Alignment explanation
Indices: 82226209--82226351 Score: 277
Period size: 71 Copynumber: 2.0 Consensus size: 71
82226199 TCTTGTGTTG
*
82226209 TGTACGTGTGTATTCACTGAGCTTTCGCAAGCTCTTCTCTTTTAGTAGTGGAAAAGTGATAATAG
1 TGTACGTGTGTATTCACTGAGCTTTCACAAGCTCTTCTCTTTTAGTAGTGGAAAAGTGATAATAG
82226274 TATGTA
66 TATGTA
82226280 TGTACGTGTGTATTCACTGAGCTTTCACAAGCTCTTCTCTTTTAGTAGTGGAAAAGTGATAATAG
1 TGTACGTGTGTATTCACTGAGCTTTCACAAGCTCTTCTCTTTTAGTAGTGGAAAAGTGATAATAG
82226345 TATGTA
66 TATGTA
82226351 T
1 T
82226352 TTTTAATAAA
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 71 1.00
ACGTcount: A:0.26, C:0.14, G:0.22, T:0.38
Consensus pattern (71 bp):
TGTACGTGTGTATTCACTGAGCTTTCACAAGCTCTTCTCTTTTAGTAGTGGAAAAGTGATAATAG
TATGTA
Found at i:82228007 original size:19 final size:19
Alignment explanation
Indices: 82227983--82228080 Score: 164
Period size: 19 Copynumber: 5.2 Consensus size: 19
82227973 AATCTTTAAG
82227983 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
82228002 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
82228021 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
82228038 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
82228057 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
82228078 GAT
1 GAT
82228081 CTTGTAATCT
Statistics
Matches: 75, Mismatches: 0, Indels: 6
0.93 0.00 0.07
Matches are distributed among these distances:
17 17 0.23
19 49 0.65
21 9 0.12
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:82228013 original size:36 final size:35
Alignment explanation
Indices: 82227973--82228080 Score: 112
Period size: 36 Copynumber: 2.9 Consensus size: 35
82227963 ATGGAAATAT
82227973 AATCTTTAAGGATATGCAATCTTAGATATGATATGC
1 AATCTTTAA-GATATGCAATCTTAGATATGATATGC
82228009 AATC-TT-AGATATGATACAATCTTAGATATGATATGC
1 AATCTTTAAGATATG---CAATCTTAGATATGATATGC
*
82228045 AATCTTAGATATGATATGCAATCTTGAAGATATGAT
1 AATCTT---TAAGATATGCAATCTT--AGATATGAT
82228081 CTTGTAATCT
Statistics
Matches: 61, Mismatches: 1, Indels: 16
0.78 0.01 0.21
Matches are distributed among these distances:
33 6 0.10
34 1 0.02
35 2 0.03
36 28 0.46
37 1 0.02
38 7 0.11
40 10 0.16
41 6 0.10
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (35 bp):
AATCTTTAAGATATGCAATCTTAGATATGATATGC
Found at i:82231103 original size:16 final size:14
Alignment explanation
Indices: 82231071--82231123 Score: 56
Period size: 14 Copynumber: 3.7 Consensus size: 14
82231061 ATCGATACCT
82231071 TTTGCATTCATGCA
1 TTTGCATTCATGCA
82231085 TTTGCATCTCATAGCA
1 TTTGCAT-TCAT-GCA
82231101 TTT-CATTGCAT-CA
1 TTTGCATT-CATGCA
*
82231114 TTTGGATTCA
1 TTTGCATTCA
82231124 AAATTATAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 9
0.77 0.02 0.20
Matches are distributed among these distances:
13 7 0.21
14 11 0.32
15 10 0.29
16 6 0.18
ACGTcount: A:0.23, C:0.21, G:0.13, T:0.43
Consensus pattern (14 bp):
TTTGCATTCATGCA
Found at i:82233653 original size:7 final size:7
Alignment explanation
Indices: 82233634--82233681 Score: 51
Period size: 7 Copynumber: 6.4 Consensus size: 7
82233624 AAAAAGAAGT
*
82233634 AAAAGAG
1 AAAAAAG
*
82233641 AAAAAAA
1 AAAAAAG
82233648 ATAAAAAG
1 A-AAAAAG
82233656 AAAAAAG
1 AAAAAAG
82233663 AGAAAAATG
1 A-AAAAA-G
82233672 AAAAAAG
1 AAAAAAG
82233679 AAA
1 AAA
82233682 CATGGAGAGG
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
7 17 0.49
8 16 0.46
9 2 0.06
ACGTcount: A:0.81, C:0.00, G:0.15, T:0.04
Consensus pattern (7 bp):
AAAAAAG
Found at i:82233669 original size:16 final size:15
Alignment explanation
Indices: 82233613--82233681 Score: 59
Period size: 16 Copynumber: 4.2 Consensus size: 15
82233603 TTCTATTTCA
82233613 AAAAAAAGGAAAAAAAG
1 AAAAAAA-G-AAAAAAG
82233630 AAGTAAAAGAGAAAAAA-
1 AA--AAAA-AGAAAAAAG
82233647 AATAAAAAGAAAAAAG
1 AA-AAAAAGAAAAAAG
*
82233663 AGAAAAATGAAAAAAG
1 A-AAAAAAGAAAAAAG
82233679 AAA
1 AAA
82233682 CATGGAGAGG
Statistics
Matches: 46, Mismatches: 1, Indels: 12
0.78 0.02 0.20
Matches are distributed among these distances:
15 10 0.22
16 19 0.41
17 5 0.11
18 6 0.13
19 5 0.11
20 1 0.02
ACGTcount: A:0.80, C:0.00, G:0.16, T:0.04
Consensus pattern (15 bp):
AAAAAAAGAAAAAAG
Found at i:82233676 original size:23 final size:23
Alignment explanation
Indices: 82233622--82233681 Score: 75
Period size: 24 Copynumber: 2.5 Consensus size: 23
82233612 AAAAAAAAGG
82233622 AAAAAAAGAAGTAAAAGAGAAAAAA
1 AAAAAAAGAA--AAAAGAGAAAAAA
*
82233647 AATAAAAAGAAAAAAGAGAAAAAT
1 AA-AAAAAGAAAAAAGAGAAAAAA
*
82233671 GAAAAAAGAAA
1 AAAAAAAGAAA
82233682 CATGGAGAGG
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
23 9 0.28
24 13 0.41
25 2 0.06
26 8 0.25
ACGTcount: A:0.80, C:0.00, G:0.15, T:0.05
Consensus pattern (23 bp):
AAAAAAAGAAAAAAGAGAAAAAA
Found at i:82234569 original size:44 final size:44
Alignment explanation
Indices: 82234515--82235015 Score: 391
Period size: 44 Copynumber: 11.5 Consensus size: 44
82234505 GGCAATGTAG
82234515 ATCGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAACAA
1 ATCGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAACAA
* * * * * *
82234559 ATCAAAGATAGCAGATCTGACA-CTCCTGTGCTTACAGCGAAGCAA
1 ATCGAAGATAGCAGATTTGGCATC-CCTGTGTTTATAGGGAA-CAA
***
82234604 ATCGAAGATTTTAGCA--TGGCATCCCTGTGTTTATAGGGAAC-A
1 ATCGAAGATAGCAG-ATTTGGCATCCCTGTGTTTATAGGGAACAA
** *
82234646 A--GTTG-T-TCAGCA--TGGCATCCCTGTGTTTATAGGGAACAA
1 ATCGAAGATAGCAG-ATTTGGCATCCCTGTGTTTATAGGGAACAA
* * *
82234685 GTTGAAGATAGTAGATTTGGCATCCCTGTGTTTATAGGGAACAA
1 ATCGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAACAA
* * * * * * *
82234729 ATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGCGAAGCAG
1 ATCGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAA-CAA
* **
82234774 ATCGAACATTTCAGCA--TGGCATCCCTGTGTTTATAGGGAACAA
1 ATCGAAGATAGCAG-ATTTGGCATCCCTGTGTTTATAGGGAACAA
* * *
82234817 GTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAAGGAACAA
1 ATCGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAACAA
* * * * * * *
82234861 ATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGCGAAGCAG
1 ATCGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAA-CAA
***
82234906 ATCGAAGATTTTAGCA--TGGCATCCCTGTGTTTATAGGGAACAA
1 ATCGAAGATAGCAG-ATTTGGCATCCCTGTGTTTATAGGGAACAA
* * * * * * * *
82234949 GTTGAAGATAGTAGATTTGGCATCCTTGTGCTTACAAGGAAAAA
1 ATCGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAACAA
*
82234993 ATCGAAGACATAGCTGATTTGGC
1 ATCGAAG--ATAGCAGATTTGGC
82235016 TTTCACGGTT
Statistics
Matches: 357, Mismatches: 79, Indels: 40
0.75 0.17 0.08
Matches are distributed among these distances:
38 30 0.08
39 2 0.01
40 2 0.01
41 2 0.01
42 6 0.02
43 27 0.08
44 233 0.65
45 40 0.11
46 15 0.04
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (44 bp):
ATCGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAACAA
Found at i:82234667 original size:38 final size:38
Alignment explanation
Indices: 82234616--82234688 Score: 146
Period size: 38 Copynumber: 1.9 Consensus size: 38
82234606 CGAAGATTTT
82234616 AGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGTTC
1 AGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGTTC
82234654 AGCATGGCATCCCTGTGTTTATAGGGAACAAGTTG
1 AGCATGGCATCCCTGTGTTTATAGGGAACAAGTTG
82234689 AAGATAGTAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (38 bp):
AGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGTTC
Found at i:82234800 original size:170 final size:172
Alignment explanation
Indices: 82234515--82234914 Score: 572
Period size: 170 Copynumber: 2.3 Consensus size: 172
82234505 GGCAATGTAG
*
82234515 ATCGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAACAAATCAAAGATAGCAGATCTGAC
1 ATCGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGAC
* *
82234580 ACTCCTGTGCTTACAGCGAAGCAAATCGAAGATTTTAGCATGGCATCCCTGTGTTTATAGGGAAC
66 ACTCCTGTGCTTACAGCGAAGCAAATCGAACATTTCAGCATGGCATCCCTGTGTTTATAGGGAAC
* *
82234645 AAGTT-GTTCAGC-A-TGGCATCCCTGTGTTTATAGGGAACAA
131 AAGTTAGAT-AGCAATTGGCATCCCTGTGTTTATAAGGAACAA
* * *
82234685 GTTGAAGATAGTAGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGAC
1 ATCGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGAC
* *
82234750 ATTCCTGTGCTTACAGCGAAGCAGATCGAACATTTCAGCATGGCATCCCTGTGTTTATAGGGAAC
66 ACTCCTGTGCTTACAGCGAAGCAAATCGAACATTTCAGCATGGCATCCCTGTGTTTATAGGGAAC
82234815 AAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAAGGAACAA
131 AAGTT--AGATAGCA-A-TTGGCATCCCTGTGTTTATAAGGAACAA
* * * * * * *
82234861 ATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGCGAAGCAGATCGAAGAT
1 ATCGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAA-CAAATCGAAGAT
82234915 TTTAGCATGG
Statistics
Matches: 202, Mismatches: 20, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
170 127 0.63
172 3 0.01
173 2 0.01
174 1 0.00
176 58 0.29
177 11 0.05
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (172 bp):
ATCGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGAC
ACTCCTGTGCTTACAGCGAAGCAAATCGAACATTTCAGCATGGCATCCCTGTGTTTATAGGGAAC
AAGTTAGATAGCAATTGGCATCCCTGTGTTTATAAGGAACAA
Found at i:82234810 original size:132 final size:132
Alignment explanation
Indices: 82234651--82235000 Score: 628
Period size: 132 Copynumber: 2.7 Consensus size: 132
82234641 GAACAAGTTG
82234651 TTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGTAGATTTGGCATCCCTGTGT
1 TTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGTAGATTTGGCATCCCTGTGT
*
82234716 TTATAGGGAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGCGAAGCAGATCGAAC
66 TTATAAGGAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGCGAAGCAGATCGAAC
82234781 AT
131 AT
*
82234783 TTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGT
1 TTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGTAGATTTGGCATCCCTGTGT
*
82234848 TTATAAGGAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGCGAAGCAGATCGAAG
66 TTATAAGGAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGCGAAGCAGATCGAAC
82234913 AT
131 AT
* * *
82234915 TTTAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGTAGATTTGGCATCCTTGTGC
1 TTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGTAGATTTGGCATCCCTGTGT
* *
82234980 TTACAAGGAAAAAATCGAAGA
66 TTATAAGGAACAAATCGAAGA
82235001 CATAGCTGAT
Statistics
Matches: 209, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
132 209 1.00
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.27
Consensus pattern (132 bp):
TTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGTAGATTTGGCATCCCTGTGT
TTATAAGGAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGCGAAGCAGATCGAAC
AT
Found at i:82235315 original size:206 final size:206
Alignment explanation
Indices: 82234962--82235695 Score: 1227
Period size: 206 Copynumber: 3.6 Consensus size: 206
82234952 GAAGATAGTA
* *
82234962 GATTTGGCATCCTTGTGCTTACAAGGAAAAAATCGAAGACATAGCTGATTTGGCTTTCACG-GTT
1 GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCT
* *
82235026 TACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCAAAGTTTGG
66 TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGG
*
82235091 CGTCTCCATATTCGACGGAGAGCAGAAACATAGCAGATCTGGCCTTCATATGTTTATACTGAAGC
131 CGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTGGCCTTCATATGTTTATACTGAAGC
82235156 AGATCCAAGGT
196 AGATCCAAGGT
* *
82235167 GATTTGGCATCATTGTGCTTACAAGGAACAAATCAAAGACATAGCTGATTTGGCTTTCACGTGCT
1 GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCT
*
82235232 TACGAAGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGG
66 TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGG
*
82235297 CGTCTCCATATTCGACGGAGACCAGACACATAGCAGATCTGGCCTTCATATGTTTATACTGAAGC
131 CGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTGGCCTTCATATGTTTATACTGAAGC
82235362 AGATCCAAGGT
196 AGATCCAAGGT
82235373 GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCT
1 GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCT
*
82235438 TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGGACAAATCGAAGTTTGG
66 TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGG
* * ** * * *
82235503 CGTCTCCATATTCGACGGAGGGCAGACACATAGCAAATCTAACCTTCAGATGATTAGACTGAAGC
131 CGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTGGCCTTCATATGTTTATACTGAAGC
* *
82235568 GGATCCAAGAT
196 AGATCCAAGGT
* * * * * *
82235579 GGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGTTGATTTGGTTTTCGCGTGCT
1 GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCT
*
82235644 TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAAAACA
66 TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACA
82235696 GATCAAAGAT
Statistics
Matches: 497, Mismatches: 31, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
205 58 0.12
206 439 0.88
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (206 bp):
GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCT
TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGG
CGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTGGCCTTCATATGTTTATACTGAAGC
AGATCCAAGGT
Found at i:82236112 original size:19 final size:19
Alignment explanation
Indices: 82236088--82236185 Score: 137
Period size: 19 Copynumber: 5.2 Consensus size: 19
82236078 AATCTTTAAG
*
82236088 GATATGCAATCTTAGTTAT
1 GATATGCAATCTTAGATAT
82236107 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
82236126 GATA--CAATCTTATATAT
1 GATATGCAATCTTAGATAT
*
82236143 GATATGCAATCTTAGATAC
1 GATATGCAATCTTAGATAT
82236162 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
82236183 GAT
1 GAT
82236186 CTTGTAATAT
Statistics
Matches: 70, Mismatches: 5, Indels: 6
0.86 0.06 0.07
Matches are distributed among these distances:
17 16 0.23
19 46 0.66
21 8 0.11
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:82236134 original size:36 final size:37
Alignment explanation
Indices: 82236088--82236174 Score: 124
Period size: 36 Copynumber: 2.3 Consensus size: 37
82236078 AATCTTTAAG
*
82236088 GATATGCAATCTTAGT-TATGATATGCAATCTTAGATAT
1 GATA-GCAATCTTA-TATATGATATGCAATCTTAGATAC
82236126 GATA-CAATCTTATATATGATATGCAATCTTAGATAC
1 GATAGCAATCTTATATATGATATGCAATCTTAGATAC
82236162 GATATGCAATCTT
1 GATA-GCAATCTT
82236175 GAAGATATGA
Statistics
Matches: 45, Mismatches: 1, Indels: 6
0.87 0.02 0.12
Matches are distributed among these distances:
35 1 0.02
36 33 0.73
38 11 0.24
ACGTcount: A:0.36, C:0.13, G:0.14, T:0.38
Consensus pattern (37 bp):
GATAGCAATCTTATATATGATATGCAATCTTAGATAC
Found at i:82241921 original size:22 final size:22
Alignment explanation
Indices: 82241895--82241951 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
82241885 TGCATCTACG
*
82241895 AACCTCTTCCATGCATTGTGCA
1 AACCTCTTACATGCATTGTGCA
* * *
82241917 AACCTCATATATGCATTGTGCG
1 AACCTCTTACATGCATTGTGCA
82241939 AA-CTCTTAGCATG
1 AACCTCTTA-CATG
82241952 AATCTATGTC
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
21 5 0.18
22 23 0.82
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.32
Consensus pattern (22 bp):
AACCTCTTACATGCATTGTGCA
Found at i:82248342 original size:93 final size:90
Alignment explanation
Indices: 82248237--82248494 Score: 256
Period size: 90 Copynumber: 2.9 Consensus size: 90
82248227 TATGTGCGCC
* * *
82248237 AGTGTTAGACATGTCTAGGATATG-ATCAGCCAC-ATAATGAGAGCCAGTGTAAGACTATGTCTG
1 AGTGTAAGACATGTCTGGGATATGCATCAGCCACGA-AATGAGAGCCAATGTAAGAC-ATGTCTG
82248300 GGACATGGCATCGGC-ATTGAGACGAGTGCT
64 GGACAT-GCATCGGCTA-TGAGA--AGTGCT
* * * * ** *
82248330 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTTAGCCAATGTTAGACATGTCTGGG
1 AGTGTAAGACATGTCTGGGATATGCATCAGCCACGAAATGAGAGCCAATGTAAGACATGTCTGGG
* *
82248395 ACATGCGTCGGCTATGAGATGTGCT
66 ACATGCATCGGCTATGAGAAGTGCT
* * * * * * *
82248420 AGTGTAAGACATGTCTGGGATATGCGTCAGCTACGAGAT--GTGCTAGTATAAGACATGTCTGGG
1 AGTGTAAGACATGTCTGGGATATGCATCAGCCACGAAATGAGAGCCAATGTAAGACATGTCTGGG
82248483 ACATGCATCGGC
66 ACATGCATCGGC
82248495 ACAGTTACAT
Statistics
Matches: 138, Mismatches: 24, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
88 29 0.21
90 39 0.28
92 12 0.09
93 35 0.25
94 22 0.16
95 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (90 bp):
AGTGTAAGACATGTCTGGGATATGCATCAGCCACGAAATGAGAGCCAATGTAAGACATGTCTGGG
ACATGCATCGGCTATGAGAAGTGCT
Found at i:82248445 original size:44 final size:44
Alignment explanation
Indices: 82248282--82248494 Score: 243
Period size: 44 Copynumber: 4.7 Consensus size: 44
82248272 AATGAGAGCC
82248282 AGTGTAAGACTATGTCTGGGACATGGCATCGGCATTGA-GACGA-GTGCT
1 AGTGTAAGAC-ATGTCTGGGACAT-GCATCGGC--T-ACGA-GATGTGCT
*
82248330 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGTTAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGG-CTACGAGATG-T-GCT
* * * *
82248376 AATGTTAGACATGTCTGGGACATGCGTCGGCTATGAGATGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGTGCT
* * *
82248420 AGTGTAAGACATGTCTGGGATATGCGTCAGCTACGAGATGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGTGCT
*
82248464 AGTATAAGACATGTCTGGGACATGCATCGGC
1 AGTGTAAGACATGTCTGGGACATGCATCGGC
82248495 ACAGTTACAT
Statistics
Matches: 144, Mismatches: 15, Indels: 16
0.82 0.09 0.09
Matches are distributed among these distances:
43 2 0.01
44 71 0.49
45 5 0.03
46 42 0.29
47 14 0.10
48 10 0.07
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.26
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGTGCT
Found at i:82248457 original size:90 final size:90
Alignment explanation
Indices: 82248278--82248495 Score: 273
Period size: 90 Copynumber: 2.4 Consensus size: 90
82248268 ACATAATGAG
82248278 AGCCAGTGTAAGACTATGTCTGGGACATGGCATCGGCATTGAGACGAGTGCTAGTGTAAGACATG
1 AGCCAGTGTAAGAC-ATGTCTGGGACAT-GCATCGGCATTGAGAC-AGTGCTAGTGTAAGACATG
*
82248343 TCTGGGACATGCATCGGCCTCGAGATGTT
63 TCTGGGACATGCATCAGCCTCGAGATG-T
* * * *
82248372 AGCCAATGTTAGACATGTCTGGGACATGCGTCGGC-TATGAGA-TGTGCTAGTGTAAGACATGTC
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCAT-TGAGACAGTGCTAGTGTAAGACATGTC
* *
82248435 TGGGATATGCGTCAG-CTACGAGATGT
65 TGGGACATGCATCAGCCT-CGAGATGT
* *
82248461 -GCTAGTATAAGACATGTCTGGGACATGCATCGGCA
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCA
82248496 CAGTTACATG
Statistics
Matches: 109, Mismatches: 12, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
88 29 0.27
89 3 0.03
90 39 0.36
91 1 0.01
92 12 0.11
93 13 0.12
94 12 0.11
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.25
Consensus pattern (90 bp):
AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGACAGTGCTAGTGTAAGACATGTCT
GGGACATGCATCAGCCTCGAGATGT
Found at i:82248507 original size:90 final size:92
Alignment explanation
Indices: 82248286--82248531 Score: 263
Period size: 90 Copynumber: 2.7 Consensus size: 92
82248276 AGAGCCAGTG
* *
82248286 TAAGACTATGTCTGGGACATGGCATCGGCATTGAGACGA-GTGCTAGTGTAAGACATGTCTGGGA
1 TAAGAC-ATGTCTGGGACAT-GCATCGGCATAGTGAC-ATGTGCTAGTGTAAGACATGTCTGGGA
* *
82248350 CATGCATCGGCCTCGAGATGTTAGCCAATG
63 CATGCATCAGCCTCGAGATGTTAGCCAATA
* * * *
82248380 TTAGACATGTCTGGGACATGCGTCGGC-TA-TGAGATGTGCTAGTGTAAGACATGTCTGGGATAT
1 TAAGACATGTCTGGGACATGCATCGGCATAGTGACATGTGCTAGTGTAAGACATGTCTGGGACAT
* * *
82248443 GCGTCAG-CTACGAGATG-T-GCTAGTA
66 GCATCAGCCT-CGAGATGTTAGCCAATA
* * * *
82248468 TAAGACATGTCTGGGACATGCATCGGCACAGTTACATGTG-TCAGTATAAGACCTGTCTGGGACA
1 TAAGACATGTCTGGGACATGCATCGGCATAGTGACATGTGCT-AGTGTAAGACATGTCTGGGACA
82248532 CAGCATAGAC
Statistics
Matches: 128, Mismatches: 19, Indels: 14
0.80 0.12 0.09
Matches are distributed among these distances:
88 29 0.23
89 6 0.05
90 67 0.52
91 1 0.01
92 7 0.05
93 13 0.10
94 5 0.04
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (92 bp):
TAAGACATGTCTGGGACATGCATCGGCATAGTGACATGTGCTAGTGTAAGACATGTCTGGGACAT
GCATCAGCCTCGAGATGTTAGCCAATA
Found at i:82256100 original size:19 final size:17
Alignment explanation
Indices: 82256076--82256110 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 17
82256066 TTTTTTAAAA
82256076 TAATTTATGAATTATTTAT
1 TAATTTAT--ATTATTTAT
82256095 TAATTTATATTATTTA
1 TAATTTATATTATTTA
82256111 AATTATTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.50
19 8 0.50
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (17 bp):
TAATTTATATTATTTAT
Found at i:82256115 original size:19 final size:20
Alignment explanation
Indices: 82256069--82256115 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 20
82256059 GTGTAATTTT
*
82256069 TTTAAAATAATTTATGAATTA
1 TTTAAATTAATTTAT-AATTA
82256090 TTT--ATTAATTTAT-ATTA
1 TTTAAATTAATTTATAATTA
82256107 TTTAAATTA
1 TTTAAATTA
82256116 TTATTTTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
17 7 0.30
19 13 0.57
21 3 0.13
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (20 bp):
TTTAAATTAATTTATAATTA
Found at i:82257167 original size:16 final size:17
Alignment explanation
Indices: 82257128--82257178 Score: 50
Period size: 16 Copynumber: 3.0 Consensus size: 17
82257118 AGCTTATTAT
82257128 TATTATATTATTAATAAA
1 TATT-TATTATTAATAAA
* *
82257146 TTTTTATTTTTAA-AAA
1 TATTTATTATTAATAAA
**
82257162 TATTTAAAATTAATAAA
1 TATTTATTATTAATAAA
82257179 ATACTATAAT
Statistics
Matches: 26, Mismatches: 6, Indels: 3
0.74 0.17 0.09
Matches are distributed among these distances:
16 12 0.46
17 11 0.42
18 3 0.12
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
TATTTATTATTAATAAA
Found at i:82259218 original size:24 final size:23
Alignment explanation
Indices: 82259190--82259235 Score: 83
Period size: 24 Copynumber: 2.0 Consensus size: 23
82259180 ATTTAGTTAA
82259190 TTTGTTTTTTATTTATATAAATTT
1 TTTGTTTTTTATTTATA-AAATTT
82259214 TTTGTTTTTTATTTATAAAATT
1 TTTGTTTTTTATTTATAAAATT
82259236 GGCATAATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 5 0.23
24 17 0.77
ACGTcount: A:0.26, C:0.00, G:0.04, T:0.70
Consensus pattern (23 bp):
TTTGTTTTTTATTTATAAAATTT
Found at i:82261829 original size:22 final size:22
Alignment explanation
Indices: 82261800--82261849 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
82261790 AATTGAACAT
* *
82261800 ATGC-TTGTGCGAACCTCTTCC
1 ATGCATTGTGCAAACCTCATCC
*
82261821 ATGCATTGTGCAAACCTCATCT
1 ATGCATTGTGCAAACCTCATCC
82261843 ATGCATT
1 ATGCATT
82261850 CTACGAACTC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
21 4 0.16
22 21 0.84
ACGTcount: A:0.22, C:0.28, G:0.16, T:0.34
Consensus pattern (22 bp):
ATGCATTGTGCAAACCTCATCC
Found at i:82267817 original size:2 final size:2
Alignment explanation
Indices: 82267810--82267834 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
82267800 AAAGGAAAAT
82267810 TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG T
82267835 CATATTGGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:82268403 original size:39 final size:39
Alignment explanation
Indices: 82268305--82268566 Score: 314
Period size: 39 Copynumber: 6.7 Consensus size: 39
82268295 TTATTGAGGA
* * * *
82268305 TTATAACCGGGCTAAGACCCGCAGGCCTT-GTG-TGAGAT-
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTG-G-TG
*
82268343 TTATATCCGGGCTAAGGCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
82268382 TTATGTCCGGGCTAAGTCCCGAAGGCATTCATGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * **
82268421 TTATATCCGGGCTAAGTCCCAAAGGTATTCACGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * * * *
82268460 TTATATCTGGGTTAAGTTCTGAAGGTATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
82268499 TTATATCCAGGCTAAGTCCCGAAGGTATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
82268538 TTATATCCGGGCTATGTCCCGAAGGCATT
1 TTATATCCGGGCTAAGTCCCGAAGGCATT
82268567 TGTGTTGGAA
Statistics
Matches: 195, Mismatches: 26, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
38 26 0.13
39 167 0.86
40 2 0.01
ACGTcount: A:0.20, C:0.21, G:0.29, T:0.30
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:82274321 original size:6 final size:6
Alignment explanation
Indices: 82274297--82274344 Score: 62
Period size: 6 Copynumber: 8.2 Consensus size: 6
82274287 TTTTGAGTCC
* * *
82274297 TTTTA- TTTTAC TATTAT TTTTAT TTTTAC TTTTAT TTTTAT TTTTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
82274344 T
1 T
82274345 CAAATTTTCT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
5 5 0.14
6 32 0.86
ACGTcount: A:0.19, C:0.04, G:0.00, T:0.77
Consensus pattern (6 bp):
TTTTAT
Found at i:82274325 original size:18 final size:18
Alignment explanation
Indices: 82274297--82274342 Score: 76
Period size: 18 Copynumber: 2.6 Consensus size: 18
82274287 TTTTGAGTCC
82274297 TTTTA-TTTTACTATTAT
1 TTTTATTTTTACTATTAT
*
82274314 TTTTATTTTTACTTTTAT
1 TTTTATTTTTACTATTAT
82274332 TTTTATTTTTA
1 TTTTATTTTTA
82274343 TTCAAATTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
17 5 0.19
18 22 0.81
ACGTcount: A:0.20, C:0.04, G:0.00, T:0.76
Consensus pattern (18 bp):
TTTTATTTTTACTATTAT
Found at i:82290744 original size:19 final size:19
Alignment explanation
Indices: 82290720--82290798 Score: 126
Period size: 19 Copynumber: 4.2 Consensus size: 19
82290710 AATCTTTAAG
82290720 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
82290739 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
82290758 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
82290775 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
82290796 GAT
1 GAT
82290799 CTTGTAATCT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.30
19 30 0.54
21 9 0.16
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:82290750 original size:36 final size:36
Alignment explanation
Indices: 82290710--82290797 Score: 119
Period size: 36 Copynumber: 2.4 Consensus size: 36
82290700 ATGGAAATAT
82290710 AATCTTTAAGGATATG-CAATCTTAGATATGATATGC
1 AATCTTTAA-GATATGACAATCTTAGATATGATATGC
82290746 AATC-TT-AGATATGATACAATCTTAGATATGATATGC
1 AATCTTTAAGATATG--ACAATCTTAGATATGATATGC
*
82290782 AATCTTGAAGATATGA
1 AATCTTTAAGATATGA
82290798 TCTTGTAATC
Statistics
Matches: 46, Mismatches: 1, Indels: 10
0.81 0.02 0.18
Matches are distributed among these distances:
33 6 0.13
34 1 0.02
35 2 0.04
36 29 0.63
37 1 0.02
38 7 0.15
ACGTcount: A:0.39, C:0.10, G:0.16, T:0.35
Consensus pattern (36 bp):
AATCTTTAAGATATGACAATCTTAGATATGATATGC
Found at i:82296374 original size:13 final size:12
Alignment explanation
Indices: 82296356--82296410 Score: 53
Period size: 11 Copynumber: 4.7 Consensus size: 12
82296346 CTTCTATTTC
82296356 AAAGAAAAGGAAA
1 AAAGAAAA-GAAA
82296369 AAAGAAAAG-AA
1 AAAGAAAAGAAA
*
82296380 AAAGAGAAA-AAT
1 AAAGA-AAAGAAA
*
82296392 ATA-AAAAGAAA
1 AAAGAAAAGAAA
82296403 AAAGAAAA
1 AAAGAAAA
82296411 AATGGAGAGC
Statistics
Matches: 34, Mismatches: 4, Indels: 9
0.72 0.09 0.19
Matches are distributed among these distances:
10 3 0.09
11 12 0.35
12 11 0.32
13 8 0.24
ACGTcount: A:0.80, C:0.00, G:0.16, T:0.04
Consensus pattern (12 bp):
AAAGAAAAGAAA
Found at i:82296387 original size:8 final size:7
Alignment explanation
Indices: 82296356--82296412 Score: 50
Period size: 7 Copynumber: 8.4 Consensus size: 7
82296346 CTTCTATTTC
82296356 AAAG-AA
1 AAAGAAA
*
82296362 AAGGAAA
1 AAAGAAA
82296369 AAAG--A
1 AAAGAAA
82296374 AAAGAAA
1 AAAGAAA
82296381 AAGAGAAA
1 AA-AGAAA
*
82296389 AATA-TAA
1 AA-AGAAA
82296396 AAAGAAA
1 AAAGAAA
82296403 AAAGAAA
1 AAAGAAA
82296410 AAA
1 AAA
82296413 TGGAGAGCCC
Statistics
Matches: 41, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
5 5 0.12
6 4 0.10
7 24 0.59
8 8 0.20
ACGTcount: A:0.81, C:0.00, G:0.16, T:0.04
Consensus pattern (7 bp):
AAAGAAA
Found at i:82296411 original size:13 final size:13
Alignment explanation
Indices: 82296356--82296412 Score: 62
Period size: 14 Copynumber: 4.2 Consensus size: 13
82296346 CTTCTATTTC
*
82296356 AAAGAAAAGGAAA
1 AAAGAAAAAGAAA
82296369 AAAG-AAAAGAAA
1 AAAGAAAAAGAAA
*
82296381 AAGAGAAAAATATAA
1 AA-AGAAAAAGA-AA
82296396 AAAGAAAAAAGAAA
1 AAAG-AAAAAGAAA
82296410 AAA
1 AAA
82296413 TGGAGAGCCC
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
12 9 0.24
13 6 0.16
14 12 0.32
15 10 0.27
ACGTcount: A:0.81, C:0.00, G:0.16, T:0.04
Consensus pattern (13 bp):
AAAGAAAAAGAAA
Found at i:82297509 original size:84 final size:84
Alignment explanation
Indices: 82297361--82297886 Score: 744
Period size: 84 Copynumber: 6.3 Consensus size: 84
82297351 AAATTCAGCA
* * *
82297361 CCTTAAT-CCCTAAGCAGTAGGGTAACAGGTTAAATTTGTAGATCTTATCTCCTTAAGTAGTAGT
1 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
* *
82297425 GAAGTAGATCGAAGACTCG
66 GGAGCAGATCGAAGACTCG
* *
82297444 CATTAATCCCCTAAGCAGTAAGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
1 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
82297509 GGAGCAGATCGAAGACTCG
66 GGAGCAGATCGAAGACTCG
* *
82297528 CCTTAATCCCCTAAGCGGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAAT
1 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
*
82297593 GGAGCAGATCGAAGACTCA
66 GGAGCAGATCGAAGACTCG
* * * *
82297612 CCTTAATCCCCAAAGCAGTAGGGTAATAGGTT-CA----CAGATCTTATCTCCCTAAGCAGTAGC
1 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
82297672 GGAGCAGATCGACGACGACTCG
66 GGAGCAGATCGA--A-GACTCG
* *
82297694 CCTTAATCCCCTAAGCAGTAGTGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGTAGTAGT
1 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
* *
82297759 GGAGCAGATTGAAGACCCG
66 GGAGCAGATCGAAGACTCG
* *
82297778 CCTTAATCCCCTAAGTAGTAGGGTAACAGGTTAAATTTGCAGATCTTA--TCCCTAAGCAGTAGC
1 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
*
82297841 GGAGCAGATCGAAGACAATGCA
66 GGAGCAGATCGAAGAC--T-CG
*
82297863 CCTTAACCCCCTAAGCAGTAGGGT
1 CCTTAATCCCCTAAGCAGTAGGGT
82297887 CCAAGATGAT
Statistics
Matches: 395, Mismatches: 36, Indels: 22
0.87 0.08 0.05
Matches are distributed among these distances:
79 36 0.09
81 1 0.00
82 62 0.16
83 8 0.02
84 229 0.58
85 24 0.06
87 35 0.09
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (84 bp):
CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAGT
GGAGCAGATCGAAGACTCG
Found at i:82297736 original size:166 final size:167
Alignment explanation
Indices: 82297361--82297886 Score: 726
Period size: 166 Copynumber: 3.1 Consensus size: 167
82297351 AAATTCAGCA
* *
82297361 CCTTAAT-CCCTAAGCAGTAGGGTAACAGGTTAAATTTGTAGATCTTATCTCCTTAAGTAGTAGT
1 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGTAGTAGT
* * * *
82297425 GAAGTAGATCGAAGACTCGCATTAATCCCCTAAGCAGTAAGGTAACAGGTTAAATTTGCAGATCT
66 GGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAA--T-CAGATCT
*
82297490 TATCTCCCTAAGCAGTAGTGGAGCAGATCGA-A-GACTCG
128 TATCTCCCTAAGCAGTAGCGGAGCAGATCGAGACGACTCG
* * *
82297528 CCTTAATCCCCTAAGCGGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAAT
1 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGTAGTAGT
* * * *
82297593 GGAGCAGATCGAAGACTCACCTTAATCCCCAAAGCAGTAGGGTAATAGGTT-CA-CAGATCTTAT
66 GGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATCAGATCTTAT
82297656 CTCCCTAAGCAGTAGCGGAGCAGATCGACGACGACTCG
131 CTCCCTAAGCAGTAGCGGAGCAGATCGA-GACGACTCG
*
82297694 CCTTAATCCCCTAAGCAGTAGTGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGTAGTAGT
1 CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGTAGTAGT
* * *
82297759 GGAGCAGATTGAAGACCCGCCTTAATCCCCTAAGTAGTAGGGTAACAGGTTAAATTTGCAGATCT
66 GGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAA--T-CAGATCT
* *
82297824 TA--TCCCTAAGCAGTAGCGGAGCAGATCGAAGAC-AATGCA
128 TATCTCCCTAAGCAGTAGCGGAGCAGATCG-AGACGACT-CG
*
82297863 CCTTAACCCCCTAAGCAGTAGGGT
1 CCTTAATCCCCTAAGCAGTAGGGT
82297887 CCAAGATGAT
Statistics
Matches: 319, Mismatches: 29, Indels: 20
0.87 0.08 0.05
Matches are distributed among these distances:
163 37 0.12
165 1 0.00
166 112 0.35
167 9 0.03
168 98 0.31
169 52 0.16
170 1 0.00
171 9 0.03
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (167 bp):
CCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGTAGTAGT
GGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATCAGATCTTAT
CTCCCTAAGCAGTAGCGGAGCAGATCGAGACGACTCG
Found at i:82297831 original size:41 final size:41
Alignment explanation
Indices: 82297702--82297839 Score: 111
Period size: 41 Copynumber: 3.3 Consensus size: 41
82297692 CGCCTTAATC
*
82297702 CCCTAAGCAGTAGTGTAACAGGTTAAATTTGCAGATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTA--T
* * * * *** * *
82297745 CCCTAAGTAGTAGTGG-AGCAGATTGAA-GACCCG-CCTTAAT
1 CCCTAAGCAGTAG-GGTAACAGGTTAAATTTGCAGATCTT-AT
*
82297785 CCCCTAAGTAGTAGGGTAACAGGTTAAATTTGCAGATCTTAT
1 -CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTAT
82297827 CCCTAAGCAGTAG
1 CCCTAAGCAGTAG
82297840 CGGAGCAGAT
Statistics
Matches: 70, Mismatches: 19, Indels: 14
0.68 0.18 0.14
Matches are distributed among these distances:
40 3 0.04
41 36 0.51
42 7 0.10
43 23 0.33
44 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (41 bp):
CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTAT
Found at i:82298685 original size:19 final size:19
Alignment explanation
Indices: 82298661--82298757 Score: 146
Period size: 19 Copynumber: 5.2 Consensus size: 19
82298651 AATCTTTAAG
*
82298661 GATATGCAATCTTAGATGT
1 GATATGCAATCTTAGATAT
82298680 GATATGCAATCTTAGA-AT
1 GATATGCAATCTTAGATAT
82298698 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
82298715 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
82298734 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
82298755 GAT
1 GAT
82298758 CTTATAATCT
Statistics
Matches: 72, Mismatches: 1, Indels: 8
0.89 0.01 0.10
Matches are distributed among these distances:
16 10 0.14
17 6 0.08
18 5 0.07
19 42 0.58
21 9 0.12
ACGTcount: A:0.37, C:0.10, G:0.18, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:82298707 original size:35 final size:37
Alignment explanation
Indices: 82298661--82298757 Score: 135
Period size: 35 Copynumber: 2.6 Consensus size: 37
82298651 AATCTTTAAG
*
82298661 GATATGCAATCTTAGATGTGATATGCAATCTTAGA-AT
1 GATA-GCAATCTTAGATATGATATGCAATCTTAGATAT
82298698 GATA-CAATCTTAGATATGATATGCAATCTTAGATAT
1 GATAGCAATCTTAGATATGATATGCAATCTTAGATAT
82298734 GATATGCAATCTTGAAGATATGAT
1 GATA-GCAATCTT--AGATATGAT
82298758 CTTATAATCT
Statistics
Matches: 54, Mismatches: 1, Indels: 7
0.87 0.02 0.11
Matches are distributed among these distances:
35 28 0.52
36 6 0.11
37 4 0.07
38 7 0.13
40 9 0.17
ACGTcount: A:0.37, C:0.10, G:0.18, T:0.35
Consensus pattern (37 bp):
GATAGCAATCTTAGATATGATATGCAATCTTAGATAT
Found at i:82300351 original size:16 final size:17
Alignment explanation
Indices: 82300312--82300362 Score: 50
Period size: 16 Copynumber: 3.0 Consensus size: 17
82300302 AGCTTAATAT
82300312 TATTATATTATTAATAAA
1 TATT-TATTATTAATAAA
* *
82300330 TTTTTATTTTTAA-AAA
1 TATTTATTATTAATAAA
**
82300346 TATTTAAAATTAATAAA
1 TATTTATTATTAATAAA
82300363 ATACTATAAT
Statistics
Matches: 26, Mismatches: 6, Indels: 3
0.74 0.17 0.09
Matches are distributed among these distances:
16 12 0.46
17 11 0.42
18 3 0.12
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
TATTTATTATTAATAAA
Found at i:82304565 original size:29 final size:28
Alignment explanation
Indices: 82304530--82304607 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
82304520 TCATGAGATT
82304530 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
82304560 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
82304587 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
82304608 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:82304873 original size:173 final size:174
Alignment explanation
Indices: 82304560--82304886 Score: 548
Period size: 173 Copynumber: 1.9 Consensus size: 174
82304550 AAATTGTACA
* * *
82304560 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTATGCGCGGTTGATTACTAAACACTATG
* * * *
82304625 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTATATAAATTATTTACATGAAGGGTGCGACTTTACCGAATCAA
82304690 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* * * *
82304734 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTATGCGTGGTTGATTACTAAACATTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTATGCGCGGTTGATTACTAAACACTATG
82304799 TGTGC-AACCCAATATATATTTTATATAAATTATTTACATGAAGGGTGCGACTTTACCGAATCAA
66 TGTGCGAACCCAATATATATTTTATATAAATTATTTACATGAAGGGTGCGACTTTACCGAATCAA
82304863 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
82304887 ACCTTGAGTT
Statistics
Matches: 142, Mismatches: 11, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
173 79 0.56
174 63 0.44
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTATGCGCGGTTGATTACTAAACACTATG
TGTGCGAACCCAATATATATTTTATATAAATTATTTACATGAAGGGTGCGACTTTACCGAATCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:82309399 original size:40 final size:40
Alignment explanation
Indices: 82309316--82309408 Score: 143
Period size: 40 Copynumber: 2.3 Consensus size: 40
82309306 TCAGAGCTTG
82309316 GTTTCGAAGGGCCTTTGAGCCAGTGCTAATAACCGAACTTA
1 GTTTCGAAGGG-CTTTGAGCCAGTGCTAATAACCGAACTTA
* *
82309357 GTTTCGAAGGGCTTTAGAGCCAGTG-TCATAACCGGACTTA
1 GTTTCGAAGGGCTTT-GAGCCAGTGCTAATAACCGAACTTA
82309397 GTTTCGAAGGGC
1 GTTTCGAAGGGC
82309409 CTTCGAACCT
Statistics
Matches: 49, Mismatches: 2, Indels: 3
0.91 0.04 0.06
Matches are distributed among these distances:
40 29 0.59
41 20 0.41
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
GTTTCGAAGGGCTTTGAGCCAGTGCTAATAACCGAACTTA
Found at i:82317952 original size:41 final size:41
Alignment explanation
Indices: 82317785--82317962 Score: 148
Period size: 41 Copynumber: 4.4 Consensus size: 41
82317775 TTAAATCCGA
*
82317785 GCTTGGTTTCGAAGGGCCTTTGAGCCAGTGCTAATAA-CTGA
1 GCTTGGTTTCGAAGGGCCTTTGAGCCAGTGCTAATAATC-GG
* * * * *
82317826 ACTTAGTTTCGAAGGG-CTTTAGAGCCAGTG-TCATAACCAG
1 GCTTGGTTTCGAAGGGCCTTT-GAGCCAGTGCTAATAATCGG
* * * * * * *
82317866 ACTTAGTTCCAAAGGGCCTTCGAGCCAGTGGT-CTAATCGG
1 GCTTGGTTTCGAAGGGCCTTTGAGCCAGTGCTAATAATCGG
* * *
82317906 AGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAAGAATCGG
1 -GCTTGGTTTCGAAGGGCCTTTGAGCCAGTGCTAATAATCGG
*
82317948 GCTTGATTTCGAAGG
1 GCTTGGTTTCGAAGG
82317963 ATGTTTGTGC
Statistics
Matches: 108, Mismatches: 23, Indels: 12
0.76 0.16 0.08
Matches are distributed among these distances:
40 37 0.34
41 65 0.60
42 6 0.06
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (41 bp):
GCTTGGTTTCGAAGGGCCTTTGAGCCAGTGCTAATAATCGG
Found at i:82324945 original size:79 final size:80
Alignment explanation
Indices: 82324808--82324993 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 80
82324798 TTTGAATGAT
* *
82324808 TTCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCAT
1 TTCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAA
82324872 TTGTGCGAGATACTAA
66 TTGTGCGAGATACT-A
* * ** **
82324888 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCA
1 TTCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
82324950 ATTGTGCGAGTTACTA
65 ATTGTGCGAGATACTA
* *
82324966 TAACCGGGCTATGTCCCGAAGGCATTTG
1 T-TCCGGGCTAAGTCCCGAAGGCATTTG
82324994 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 33 0.36
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
TTCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAA
TTGTGCGAGATACTA
Found at i:82325007 original size:40 final size:40
Alignment explanation
Indices: 82324810--82324993 Score: 198
Period size: 40 Copynumber: 4.6 Consensus size: 40
82324800 TGAATGATTT
* * * *
82324810 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
82324850 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
82324890 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTATTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
82324928 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
82324969 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
82324994 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 15, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
39 34 0.28
40 78 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:82325015 original size:79 final size:79
Alignment explanation
Indices: 82324862--82325026 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
82324852 GGACTAAGAT
* * ** *
82324862 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTATTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
82324927 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
82324941 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
82325004 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
82325020 CCGAAGG
1 CCGAAGG
82325027 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 24 0.33
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:82333625 original size:16 final size:17
Alignment explanation
Indices: 82333586--82333641 Score: 51
Period size: 16 Copynumber: 3.2 Consensus size: 17
82333576 AGCTTAATAT
82333586 TATTATATTATTAATAAA
1 TATT-TATTATTAATAAA
* *
82333604 TTTTTATTTTTAA-AAA
1 TATTTATTATTAATAAA
**
82333620 TATTTAAAATTAATAAAA
1 TATTTATTATTAAT-AAA
82333638 TATT
1 TATT
82333642 ATAATTTTCA
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
16 12 0.40
17 8 0.27
18 10 0.33
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (17 bp):
TATTTATTATTAATAAA
Found at i:82336652 original size:26 final size:27
Alignment explanation
Indices: 82336623--82336675 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
82336613 GCCCCCTAAC
82336623 TGAT-AAATGACTATTATGCCCCTATG
1 TGATAAAATGACTATTATGCCCCTATG
* *
82336649 TGATAAAATGACTGTTATGCCCTTATG
1 TGATAAAATGACTATTATGCCCCTATG
82336676 AATTGTATGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 4 0.17
27 20 0.83
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36
Consensus pattern (27 bp):
TGATAAAATGACTATTATGCCCCTATG
Found at i:82337062 original size:40 final size:40
Alignment explanation
Indices: 82337007--82337122 Score: 133
Period size: 40 Copynumber: 2.9 Consensus size: 40
82336997 TTTTTCATAC
**
82337007 AGATCGAGCATTAGCGGTGTTTTTTGAAAAACGCCACTAT
1 AGATCGAGCATTAGCGACGTTTTTTGAAAAACGCCACTAT
* * * * *
82337047 AGATCGAGCATTAGCGACGTTTCTTCATAAACGTCGCTAT
1 AGATCGAGCATTAGCGACGTTTTTTGAAAAACGCCACTAT
* * * *
82337087 AGGTCGACCATTAGCGACGCTTTCTGAAAAACGCCA
1 AGATCGAGCATTAGCGACGTTTTTTGAAAAACGCCA
82337123 AAAGTTAAGC
Statistics
Matches: 60, Mismatches: 16, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (40 bp):
AGATCGAGCATTAGCGACGTTTTTTGAAAAACGCCACTAT
Found at i:82337220 original size:40 final size:40
Alignment explanation
Indices: 82337165--82337273 Score: 137
Period size: 40 Copynumber: 2.7 Consensus size: 40
82337155 AGGTTTAGTG
*
82337165 GCATTAGCGGCGCTTTTTGGAAAACGCCAATACAGGTCGA
1 GCATTAGCGGCGCTTTTTGAAAAACGCCAATACAGGTCGA
* ** * *
82337205 GCATTAGTGGCGCTTTTTGAAAAACGCCGCTATAGGTTGA
1 GCATTAGCGGCGCTTTTTGAAAAACGCCAATACAGGTCGA
* * *
82337245 CCATTAGCAGTGCTTTTTGAAAAACGCCA
1 GCATTAGCGGCGCTTTTTGAAAAACGCCA
82337274 CAAAAAAATT
Statistics
Matches: 58, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 58 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.27
Consensus pattern (40 bp):
GCATTAGCGGCGCTTTTTGAAAAACGCCAATACAGGTCGA
Found at i:82337375 original size:35 final size:35
Alignment explanation
Indices: 82337333--82337401 Score: 102
Period size: 35 Copynumber: 2.0 Consensus size: 35
82337323 TTAGCGGCAC
** * *
82337333 TTTTGAAAAATGCCTCTGTAGATTGAGCATTAGCT
1 TTTTGAAAAACACCGCTATAGATTGAGCATTAGCT
82337368 TTTTGAAAAACACCGCTATAGATTGAGCATTAGC
1 TTTTGAAAAACACCGCTATAGATTGAGCATTAGC
82337402 GACGCTTTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33
Consensus pattern (35 bp):
TTTTGAAAAACACCGCTATAGATTGAGCATTAGCT
Found at i:82337843 original size:7 final size:7
Alignment explanation
Indices: 82337786--82337924 Score: 82
Period size: 7 Copynumber: 19.6 Consensus size: 7
82337776 GAGTTACTAT
82337786 TTTATGG
1 TTTATGG
*
82337793 TTTATTG
1 TTTATGG
*
82337800 ATTATGG
1 TTTATGG
*
82337807 ATTATGGG
1 TTTAT-GG
*
82337815 TTTAAGG
1 TTTATGG
*
82337822 ATTATGG
1 TTTATGG
82337829 TTTATGG
1 TTTATGG
82337836 TTTATGG
1 TTTATGG
*
82337843 TTTAAGG
1 TTTATGG
* *
82337850 GTTAGGG
1 TTTATGG
*
82337857 TTTAAGG
1 TTTATGG
82337864 TTTA-GG
1 TTTATGG
*
82337870 TGTTAGGG
1 T-TTATGG
* *
82337878 GTTAAGG
1 TTTATGG
* *
82337885 GTTAGGGG
1 TTTA-TGG
*
82337893 TTTAGGG
1 TTTATGG
*
82337900 TTTATGT
1 TTTATGG
*
82337907 TTTATGA
1 TTTATGG
*
82337914 TTTAAGG
1 TTTATGG
82337921 TTTA
1 TTTA
82337925 GGGGATAGGA
Statistics
Matches: 106, Mismatches: 22, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
6 3 0.03
7 91 0.86
8 12 0.11
ACGTcount: A:0.21, C:0.00, G:0.32, T:0.47
Consensus pattern (7 bp):
TTTATGG
Found at i:82338339 original size:40 final size:40
Alignment explanation
Indices: 82338295--82338378 Score: 116
Period size: 40 Copynumber: 2.1 Consensus size: 40
82338285 AAAATTATAA
* * *
82338295 AAAAGTAAAGCATTAGC-AGCATTTATGATAAAAACGCTGC
1 AAAAGGAAAGCAATAGCGA-CATTTATGATAAAAACGCCGC
*
82338335 AAAAGGCAAGCAATAGCGACATTTATGATAAAAACGCCGC
1 AAAAGGAAAGCAATAGCGACATTTATGATAAAAACGCCGC
82338375 AAAA
1 AAAA
82338379 AATTAATTTA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
40 38 0.97
41 1 0.03
ACGTcount: A:0.48, C:0.17, G:0.18, T:0.18
Consensus pattern (40 bp):
AAAAGGAAAGCAATAGCGACATTTATGATAAAAACGCCGC
Found at i:82345273 original size:29 final size:28
Alignment explanation
Indices: 82345237--82345314 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
82345227 TCATGAGATT
82345237 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
82345267 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
82345294 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
82345315 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:82345589 original size:173 final size:174
Alignment explanation
Indices: 82345267--82345593 Score: 557
Period size: 173 Copynumber: 1.9 Consensus size: 174
82345257 AAATTGTACA
* *
82345267 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
* *
82345332 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCAACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCAACTTTACCGAGTCAA
82345397 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* * * *
82345441 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGTGGTTGATTACTAAACATTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
* *
82345506 TGTGC-AACCCAGTATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCAACTTTACCGAGTCAA
82345570 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
82345594 ACCTTGAGTT
Statistics
Matches: 143, Mismatches: 10, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
173 79 0.55
174 64 0.45
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCAACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:82353432 original size:29 final size:28
Alignment explanation
Indices: 82353396--82353473 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
82353386 TCATGAGATT
82353396 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
82353426 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
82353453 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
82353474 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:82353747 original size:173 final size:174
Alignment explanation
Indices: 82353426--82353752 Score: 566
Period size: 173 Copynumber: 1.9 Consensus size: 174
82353416 AAATTGTACA
* *
82353426 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
* *
82353491 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
82353556 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* * * *
82353600 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGTGGTTGATTACTAAACATTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
*
82353665 TGTGC-AACCCAGTATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
82353729 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
82353753 ACCTTGAGTT
Statistics
Matches: 144, Mismatches: 9, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
173 80 0.56
174 64 0.44
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:82359349 original size:43 final size:43
Alignment explanation
Indices: 82359301--82359391 Score: 119
Period size: 43 Copynumber: 2.1 Consensus size: 43
82359291 ATAATTTTTT
* *
82359301 TAAAGGTAATATTTTTTAGCGGCGTTTGTGAGAAAAGCGCCGC
1 TAAAGGTAATATTCTTTAGCGGCGTTTGTGAGAAAAGCGCAGC
* * * * *
82359344 TAAAGGTCATGTTCTTTAGCGTCGTTTTTGGGAAAAGCGCAGC
1 TAAAGGTAATATTCTTTAGCGGCGTTTGTGAGAAAAGCGCAGC
82359387 TAAAG
1 TAAAG
82359392 ATCATGTTCT
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (43 bp):
TAAAGGTAATATTCTTTAGCGGCGTTTGTGAGAAAAGCGCAGC
Found at i:82359397 original size:43 final size:43
Alignment explanation
Indices: 82359315--82359406 Score: 130
Period size: 43 Copynumber: 2.1 Consensus size: 43
82359305 GGTAATATTT
* *
82359315 TTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCATGTTC
1 TTTAGCGGCGTTTGTGAGAAAAGCGCAGCTAAAGATCATGTTC
* * *
82359358 TTTAGCGTCGTTTTTGGGAAAAGCGCAGCTAAAGATCATGTTC
1 TTTAGCGGCGTTTGTGAGAAAAGCGCAGCTAAAGATCATGTTC
*
82359401 TATAGC
1 TTTAGC
82359407 AGCTTTTTTT
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.30
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGAGAAAAGCGCAGCTAAAGATCATGTTC
Found at i:82364986 original size:48 final size:48
Alignment explanation
Indices: 82364819--82365058 Score: 213
Period size: 48 Copynumber: 5.1 Consensus size: 48
82364809 CTCACACATA
* * * *
82364819 TCATAT-AATGCCAATGTCA-GATCCCATATATGGTCTTACATGGGATC
1 TCATATCAATGCCAATGCCATG-TCCCAGACATGGTCTTATATGGGATC
** * * * * * * *
82364866 TCA-ACTCGGTGCCGATGCCATATCCCAGATATGGCCTTATTTAGGACC
1 TCATA-TCAATGCCAATGCCATGTCCCAGACATGGTCTTATATGGGATC
* *
82364914 TCATA-CGATGCC-ATGCCATGTCCCAGACATGGTCTTATACGGGATC
1 TCATATCAATGCCAATGCCATGTCCCAGACATGGTCTTATATGGGATC
* * * * *
82364960 TCATAAT-GATGCTAATGCCATGTCCCAAACATGGTTTTATATAGGATC
1 TCAT-ATCAATGCCAATGCCATGTCCCAGACATGGTCTTATATGGGATC
* *
82365008 TCATGTCAATGCCGATGCCATGTCCCAGACATGGTCTTATATGGGATC
1 TCATATCAATGCCAATGCCATGTCCCAGACATGGTCTTATATGGGATC
82365056 TCA
1 TCA
82365059 ATAACCCTAA
Statistics
Matches: 154, Mismatches: 31, Indels: 15
0.77 0.16 0.08
Matches are distributed among these distances:
46 32 0.21
47 17 0.11
48 104 0.68
49 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.30
Consensus pattern (48 bp):
TCATATCAATGCCAATGCCATGTCCCAGACATGGTCTTATATGGGATC
Found at i:82368921 original size:33 final size:33
Alignment explanation
Indices: 82368875--82368939 Score: 103
Period size: 33 Copynumber: 2.0 Consensus size: 33
82368865 TCCCCCATTA
*
82368875 CTTGATCCACTCCTCAAAACTCTCCTCCAATCC
1 CTTGATCCACTCCTCAAAACTCTCCTCAAATCC
* *
82368908 CTTGATTCGCTCCTCAAAACTCTCCTCAAATC
1 CTTGATCCACTCCTCAAAACTCTCCTCAAATC
82368940 TCTCAACCAT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.25, C:0.42, G:0.05, T:0.29
Consensus pattern (33 bp):
CTTGATCCACTCCTCAAAACTCTCCTCAAATCC
Found at i:82373187 original size:50 final size:50
Alignment explanation
Indices: 82373110--82373548 Score: 451
Period size: 50 Copynumber: 8.7 Consensus size: 50
82373100 ACCGAAGCTC
* * *
82373110 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
* * * *
82373160 TTTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGAGCTAACCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
** * * *
82373210 TC-GGATACATGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGCTA
1 TCTGG-TACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-CAA
* * *
82373261 TCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATC-CGACCTAACAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACA-CGTGACCTAACAA
*
82373311 TCTGGTACACGA-AGTAGCCTGCACTTAGTACTACACACGTGACCTAACCA
1 TCTGGTACAC-ATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
* * * * * *
82373361 TC-GAATACACGTAGTAGCCTGTACTTAGTACTACACACGTGATCGAAGCTA
1 TCTG-GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-CAA
* ** * * *
82373412 TCGGGTATGCATAGTAG-CTGCACTTAGTACTACACATGCGACCTAAAAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
**
82373461 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATATGACCTAA-AA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
* *
82373510 -CTGTCTTAATCACATAGTAGCCTGCACATAGTACTACAC
1 TCTG--GT-A-CACATAGTAGCCTGCACTTAGTACTACAC
82373549 TTGTGTTCTC
Statistics
Matches: 327, Mismatches: 47, Indels: 28
0.81 0.12 0.07
Matches are distributed among these distances:
48 3 0.01
49 21 0.06
50 218 0.67
51 53 0.16
52 32 0.10
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (50 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
Found at i:82373376 original size:151 final size:151
Alignment explanation
Indices: 82373102--82373548 Score: 675
Period size: 151 Copynumber: 3.0 Consensus size: 151
82373092 CCCTTGTAAC
* * *
82373102 CGAAGCTCTCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATTTGGTA
1 CGAAGCTATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTA
* * * *
82373167 CACGTAGTAGCCTGCACTTAGTACTACACACGTGAGCTAACCATCGGATACATGTAGTAGCCTGC
66 CACGAAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCGAATACACGTAGTAGCCTGC
82373232 ACTTAGTACTACACACGTGAT
131 ACTTAGTACTACACACGTGAT
*
82373253 CGAAGCTATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATCCGACCTAACAATCTGGTA
1 CGAAGCTATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTA
*
82373318 CACGAAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCGAATACACGTAGTAGCCTGT
66 CACGAAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCGAATACACGTAGTAGCCTGC
82373383 ACTTAGTACTACACACGTGAT
131 ACTTAGTACTACACACGTGAT
* *
82373404 CGAAGCTATCGGGTATGCATAGTAG-CTGCACTTAGTACTACACATGCGACCTAAAAATCTGGTA
1 CGAAGCTATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTA
** ** * *
82373468 CAC-ATAGTAGCCTGCACTTAGTACTACACATATGACCTAAAACTGTCTTAAT-CACATAGTAGC
66 CACGA-AGTAGCCTGCACTTAGTACTACACACGTGACCT--AACCATC-GAATACACGTAGTAGC
*
82373531 CTGCACATAGTACTACAC
127 CTGCACTTAGTACTACAC
82373549 TTGTGTTCTC
Statistics
Matches: 272, Mismatches: 20, Indels: 7
0.91 0.07 0.02
Matches are distributed among these distances:
149 1 0.00
150 71 0.26
151 166 0.61
152 31 0.11
153 3 0.01
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (151 bp):
CGAAGCTATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTA
CACGAAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCGAATACACGTAGTAGCCTGC
ACTTAGTACTACACACGTGAT
Found at i:82381737 original size:22 final size:23
Alignment explanation
Indices: 82381696--82381738 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
82381686 TTTAATTATT
*
82381696 ATTTTTTCATTTATCTAAATTTG
1 ATTTTTTCATTTATCAAAATTTG
*
82381719 ATTTTTTTATTTAT-AAAATT
1 ATTTTTTCATTTATCAAAATT
82381739 GGCATAATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 5 0.28
23 13 0.72
ACGTcount: A:0.30, C:0.05, G:0.02, T:0.63
Consensus pattern (23 bp):
ATTTTTTCATTTATCAAAATTTG
Found at i:82391426 original size:15 final size:15
Alignment explanation
Indices: 82391401--82391433 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
82391391 AACCACTTAC
82391401 ATGTAGAACTGTT-T
1 ATGTAGAACTGTTAT
82391415 ATGTACGAACTGTTAT
1 ATGTA-GAACTGTTAT
82391431 ATG
1 ATG
82391434 CGATCTATCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 5 0.29
15 8 0.47
16 4 0.24
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.39
Consensus pattern (15 bp):
ATGTAGAACTGTTAT
Found at i:82392568 original size:27 final size:27
Alignment explanation
Indices: 82392516--82392569 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
82392506 GAAACAGTGT
* *
82392516 GGGCTTGAGCCCATTTCAGTAACAGTA
1 GGGCTTAAGCCCATTACAGTAACAGTA
82392543 GGGCTTAAGCCCATTACAG-AATCAGTA
1 GGGCTTAAGCCCATTACAGTAA-CAGTA
82392570 CAGTATGCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 2 0.08
27 22 0.92
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (27 bp):
GGGCTTAAGCCCATTACAGTAACAGTA
Found at i:82398308 original size:49 final size:49
Alignment explanation
Indices: 82398134--82399253 Score: 1879
Period size: 49 Copynumber: 23.3 Consensus size: 49
82398124 CCCTTCGGGA
* * * * * *
82398134 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
82398181 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82398228 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82398275 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82398324 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
82398371 CTTATCACATATATATACGCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
82398420 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82398467 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
82398516 CTTATCAC--ATATATACACTTTCACATTCATCATATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
82398563 CTTATCACATATATATACACTTTCAGATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
82398612 CTTATCACATATATATACACTTTCACATTCATCACATCGGCGATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
82398661 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
82398710 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGA
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
82398759 CTTATTACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
82398808 CTTATCAC--ATATATACATTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
82398855 CTTATCGC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82398902 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
82398951 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82399000 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
82399047 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82399094 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82399143 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82399190 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82399239 CTTATCACATATATA
1 CTTATCACATATATA
82399254 CACTGTCTTG
Statistics
Matches: 1022, Mismatches: 35, Indels: 30
0.94 0.03 0.03
Matches are distributed among these distances:
46 1 0.00
47 454 0.44
49 567 0.55
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:82398331 original size:96 final size:96
Alignment explanation
Indices: 82398134--82399253 Score: 1878
Period size: 96 Copynumber: 11.6 Consensus size: 96
82398124 CCCTTCGGGA
* * * * * * * * *
82398134 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGACCCTGTCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
82398197 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
82398228 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
82398293 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
82398324 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
82398389 GCTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
82398420 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
82398485 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
82398516 CTTATCACATATATACACTTTCACATTCATCATATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
82398581 ACTTTCAGATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
82398612 CTTATCACATATATATACACTTTCACATTCATCACATCGGCGATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
*
82398677 ACACTTTCACATTCATCACATCGGCTATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
82398710 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGACTTATTACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
*
82398775 ACACTTTCACATTCATCACATCGGCTATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
* *
82398808 CTTATCACATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCGC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
82398871 ACTTTCACATTCATCACATCGGCTATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
82398902 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
*
82398967 ACACTTTCACATTCATCACATCGGCTATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
82399000 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
82399063 ACTTTCACATTCATCACATCGGCTATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
82399094 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
82399157 ACACTTTCACATTCATCACATCGGCCATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
82399190 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
82399254 CACTGTCTTG
Statistics
Matches: 984, Mismatches: 30, Indels: 20
0.95 0.03 0.02
Matches are distributed among these distances:
94 140 0.14
96 605 0.61
98 239 0.24
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:82402855 original size:34 final size:34
Alignment explanation
Indices: 82402817--82402882 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 34
82402807 AGTAGTAAAC
* *
82402817 AATATGCTCATAATGGTTCGATTTAGTAGCAATT
1 AATATGCTCATAATAGTTCAATTTAGTAGCAATT
* * *
82402851 AATATGCTTATGATAGTTCAATTTGGTAGCAA
1 AATATGCTCATAATAGTTCAATTTAGTAGCAA
82402883 AAATTATGGT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.33, C:0.11, G:0.18, T:0.38
Consensus pattern (34 bp):
AATATGCTCATAATAGTTCAATTTAGTAGCAATT
Found at i:82404761 original size:42 final size:42
Alignment explanation
Indices: 82404714--82404805 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
82404704 TAGCTCTTAG
* ** *
82404714 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
82404756 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
82404798 GCCCATTT
1 GCCCATTT
82404806 GGAGAGACTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:82404995 original size:26 final size:26
Alignment explanation
Indices: 82404950--82405047 Score: 153
Period size: 26 Copynumber: 3.8 Consensus size: 26
82404940 CCTCTTTAAT
82404950 AACTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
**
82404975 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
**
82405001 AACAAGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
82405027 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
82405048 GCACTTCCTC
Statistics
Matches: 64, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
25 10 0.16
26 54 0.84
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAATA
Found at i:82405911 original size:27 final size:27
Alignment explanation
Indices: 82405849--82405926 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
82405839 GGGCATATTC
82405849 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
82405876 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
* *
82405903 GTCTTTTTACC-TATTAGGGGTATT
1 GTCATTTTACCATA-CAGGGGTATT
82405927 TTAGTCCTTT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
26 3 0.07
27 39 0.91
28 1 0.02
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.37
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:82405997 original size:27 final size:27
Alignment explanation
Indices: 82405971--82406100 Score: 109
Period size: 27 Copynumber: 4.7 Consensus size: 27
82405961 ATCTACAAAC
* *
82405971 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTCAGTAATTTTATAAAT
* *
82405998 CAATGGTATTTCTA-TAATTTTTAAAAAGT
1 CAAGGGTATTTC-AGTAA-TTTTATAAA-T
* **
82406027 CAAGTGTATTTTTGTAATTTTATAAAT
1 CAAGGGTATTTCAGTAATTTTATAAAT
* ** *
82406054 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTCAGTAATTTTATAAAT
**
82406081 TGAGGGTATTTCAGTAATTT
1 CAAGGGTATTTCAGTAATTT
82406101 CACAAACCAG
Statistics
Matches: 81, Mismatches: 18, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
27 53 0.65
28 16 0.20
29 12 0.15
ACGTcount: A:0.32, C:0.07, G:0.17, T:0.44
Consensus pattern (27 bp):
CAAGGGTATTTCAGTAATTTTATAAAT
Found at i:82406116 original size:54 final size:54
Alignment explanation
Indices: 82405947--82406213 Score: 189
Period size: 54 Copynumber: 4.9 Consensus size: 54
82405937 TATCCTACAA
* * * ** ** *
82405947 GGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTGAGGGTATTTCAGTAATTTTACAAACCAG
* * * * * * ** * *
82406001 TGGTATTTCT-ATAATTTTTAAAAAGTCAAGTGTATTTTTGTAATTTTATAAATCAG
1 GGGTATTT-TGGTAA-TTTTACAAACT-GAGGGTATTTCAGTAATTTTACAAACCAG
* *
82406057 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCAGTAATTTCACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACTGAGGGTATTTCAGTAATTTTACAAACCAG
* * * ** *
82406111 TGGTATTTTGGTAATTTTACAAGCT-AGGGCCATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTGAGGG-TATTTCAGTAATTTTACAAACCAG
* ** * *
82406165 GGGTATTTTGGTAATTCTATCTTACAG-GGGTATTTCAGTAATTTCACAA
1 GGGTATTTTGGTAATTTTA-CAAACTGAGGGTATTTCAGTAATTTTACAA
82406214 TCGAGGGTAA
Statistics
Matches: 163, Mismatches: 43, Indels: 14
0.74 0.20 0.06
Matches are distributed among these distances:
53 4 0.02
54 104 0.64
55 22 0.13
56 33 0.20
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAACTGAGGGTATTTCAGTAATTTTACAAACCAG
Found at i:82406145 original size:27 final size:27
Alignment explanation
Indices: 82406034--82406180 Score: 120
Period size: 27 Copynumber: 5.4 Consensus size: 27
82406024 AGTCAAGTGT
* * **
82406034 ATTTTTGTAATTTTATAAA-TCAGGGGT
1 ATTTTGGTAATTTTACAAACT-AGGGCC
* *
82406061 ATTTTGGTAATTTTACAAATTGAGGG-T
1 ATTTTGGTAATTTTACAAACT-AGGGCC
** * * *
82406088 ATTTCAGTAATTTCACAAACCAGTGG-T
1 ATTTTGGTAATTTTACAAACTAG-GGCC
*
82406115 ATTTTGGTAATTTTACAAGCTAGGGCC
1 ATTTTGGTAATTTTACAAACTAGGGCC
**
82406142 ATTTTGGTAATTTTACAAACTAGGGGT
1 ATTTTGGTAATTTTACAAACTAGGGCC
82406169 ATTTTGGTAATT
1 ATTTTGGTAATT
82406181 CTATCTTACA
Statistics
Matches: 100, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
26 4 0.04
27 91 0.91
28 5 0.05
ACGTcount: A:0.29, C:0.09, G:0.20, T:0.42
Consensus pattern (27 bp):
ATTTTGGTAATTTTACAAACTAGGGCC
Found at i:82406197 original size:81 final size:81
Alignment explanation
Indices: 82406061--82406213 Score: 177
Period size: 81 Copynumber: 1.9 Consensus size: 81
82406051 AATCAGGGGT
* * **
82406061 ATTTTGGTAATTTTACAAATTGAGGGTATTTCAGTAATTTCACAAACCAGTGGTATTTTGGTAAT
1 ATTTTGGTAATTTTACAAATAGAGGGTATTTCAGTAATTTCACAAACCAGGGGTATTTCAGTAAT
*
82406126 TTTACAAGCTAGGGCC
66 TTCACAAGCTAGGGCC
** **
82406142 ATTTTGGTAATTTTACAAACTAG-GGGTATTTTGGTAA-TTCTATCTTA-CAGGGGTATTTCAGT
1 ATTTTGGTAATTTTACAAA-TAGAGGGTATTTCAGTAATTTC-A-CAAACCAGGGGTATTTCAGT
82406204 AATTTCACAA
63 AATTTCACAA
82406214 TCGAGGGTAA
Statistics
Matches: 60, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
80 3 0.05
81 53 0.88
82 4 0.07
ACGTcount: A:0.29, C:0.12, G:0.19, T:0.40
Consensus pattern (81 bp):
ATTTTGGTAATTTTACAAATAGAGGGTATTTCAGTAATTTCACAAACCAGGGGTATTTCAGTAAT
TTCACAAGCTAGGGCC
Found at i:82406220 original size:27 final size:26
Alignment explanation
Indices: 82406032--82406220 Score: 105
Period size: 27 Copynumber: 7.0 Consensus size: 26
82406022 AAAGTCAAGT
* * *
82406032 GTATTTTTGTAATTTTATAAATCAGGG
1 GTATTTTGGTAATTTCA-CAATCAGGG
* *
82406059 GTATTTTGGTAATTTTACAAAT-TGAGG
1 GTATTTTGGTAATTTCAC-AATCAG-GG
** * *
82406086 GTATTTCAGTAATTTCACAAACCAGTG
1 GTATTTTGGTAATTTCAC-AATCAGGG
* *
82406113 GTATTTTGGTAATTTTACAAGCTAGGG
1 GTATTTTGGTAATTTCACAATC-AGGG
** * *
82406140 CCATTTTGGTAATTTTACAAACTAGGG
1 GTATTTTGGTAATTTCACAATC-AGGG
*
82406167 GTATTTTGGTAA-TTCTATC-TTACAGGG
1 GTATTTTGGTAATTTC-A-CAAT-CAGGG
**
82406194 GTATTTCAGTAATTTCACAATCGAGGG
1 GTATTTTGGTAATTTCACAATC-AGGG
82406221 TAAAACGGTA
Statistics
Matches: 127, Mismatches: 25, Indels: 20
0.74 0.15 0.12
Matches are distributed among these distances:
26 8 0.06
27 113 0.89
28 6 0.05
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.40
Consensus pattern (26 bp):
GTATTTTGGTAATTTCACAATCAGGG
Found at i:82406246 original size:27 final size:27
Alignment explanation
Indices: 82406212--82406384 Score: 231
Period size: 27 Copynumber: 6.4 Consensus size: 27
82406202 GTAATTTCAC
*
82406212 AATCGAGGGTAAAACGGTAATTTTTTA
1 AATCGAGGGTAAAACGGTAATTTTATA
* *
82406239 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTTTATA
*
82406266 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTATA
* *
82406293 AATTGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTATA
* *
82406320 AATCGAGGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTATA
* * *
82406347 AATCGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAACGGTAATTTTATA
82406374 AATCGAGGGTA
1 AATCGAGGGTA
82406385 TTTCAGTAAT
Statistics
Matches: 129, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
26 1 0.01
27 127 0.98
28 1 0.01
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTTTATA
Found at i:82406284 original size:54 final size:53
Alignment explanation
Indices: 82406212--82406384 Score: 256
Period size: 54 Copynumber: 3.2 Consensus size: 53
82406202 GTAATTTCAC
* *
82406212 AATCGAGGGTAAAACGGTAATTTTTTAAACTGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTATAAA-TGAGGGTAAAATGGTAATTTTGTA
*
82406266 AATCGAGGGTAAAACGGTAATTCTATAAATTGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTATAAA-TGAGGGTAAAATGGTAATTTTGTA
* * **
82406320 AATCGAGGGTGAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAACGGTAATTCTATAAAT-GAGGGTAAAATGGTAATTTTGTA
82406374 AATCGAGGGTA
1 AATCGAGGGTA
82406385 TTTCAGTAAT
Statistics
Matches: 108, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
53 1 0.01
54 107 0.99
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.29
Consensus pattern (53 bp):
AATCGAGGGTAAAACGGTAATTCTATAAATGAGGGTAAAATGGTAATTTTGTA
Found at i:82406328 original size:81 final size:81
Alignment explanation
Indices: 82406212--82406384 Score: 258
Period size: 81 Copynumber: 2.1 Consensus size: 81
82406202 GTAATTTCAC
* * * *
82406212 AATCGAGGGTAAAACGGTAATTTTTTAAACTGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTA
1 AATCGAGGGTAAAACGGTAATTTTGTAAACTGAGGGTAAAACGGTAATTCTATAAATCGAGGGTA
*
82406277 AAACGGTAATTCTATA
66 AAACGGTAATTCTACA
* *
82406293 AATTGAGGGTAAAACGGTAATTTTGTAAA-TCGAGGGTGAAACGGTAATTCTATAAATCGAGGGT
1 AATCGAGGGTAAAACGGTAATTTTGTAAACT-GAGGGTAAAACGGTAATTCTATAAATCGAGGGT
*
82406357 AAAATGGTAATTCTACA
65 AAAACGGTAATTCTACA
82406374 AATCGAGGGTA
1 AATCGAGGGTA
82406385 TTTCAGTAAT
Statistics
Matches: 82, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
80 1 0.01
81 81 0.99
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.29
Consensus pattern (81 bp):
AATCGAGGGTAAAACGGTAATTTTGTAAACTGAGGGTAAAACGGTAATTCTATAAATCGAGGGTA
AAACGGTAATTCTACA
Found at i:82406394 original size:81 final size:81
Alignment explanation
Indices: 82406212--82406404 Score: 244
Period size: 81 Copynumber: 2.4 Consensus size: 81
82406202 GTAATTTCAC
* * * * *
82406212 AATCGAGGGTAAAACGGTAATTTTTTAAACTGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTA
1 AATCGAGGGTAAAACAGTAATTTTGTAAACTGAGGGTAAAACGGTAATTCTATAAATCGAGGGTA
*
82406277 AAACGGTAATTCTATA
66 AAACGGTAATTCTACA
* * *
82406293 AATTGAGGGTAAAACGGTAATTTTGTAAA-TCGAGGGTGAAACGGTAATTCTATAAATCGAGGGT
1 AATCGAGGGTAAAACAGTAATTTTGTAAACT-GAGGGTAAAACGGTAATTCTATAAATCGAGGGT
*
82406357 AAAATGGTAATTCTACA
65 AAAACGGTAATTCTACA
*** *
82406374 AATCGAGGGTATTTCAGTAATTTGGTAAACT
1 AATCGAGGGTAAAACAGTAATTTTGTAAACT
82406405 AAAGTATTCT
Statistics
Matches: 96, Mismatches: 14, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
80 1 0.01
81 94 0.98
82 1 0.01
ACGTcount: A:0.37, C:0.08, G:0.24, T:0.31
Consensus pattern (81 bp):
AATCGAGGGTAAAACAGTAATTTTGTAAACTGAGGGTAAAACGGTAATTCTATAAATCGAGGGTA
AAACGGTAATTCTACA
Found at i:82407817 original size:34 final size:34
Alignment explanation
Indices: 82407779--82407844 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 34
82407769 AGTAGTAAAC
* *
82407779 AATATGCTCATAATGGTTCGATTTAGTAGCAATT
1 AATATGCTCATAATAGTTCAATTTAGTAGCAATT
* * *
82407813 AATATGCTTATGATAGTTCAATTTGGTAGCAA
1 AATATGCTCATAATAGTTCAATTTAGTAGCAA
82407845 AAATTATGGT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.33, C:0.11, G:0.18, T:0.38
Consensus pattern (34 bp):
AATATGCTCATAATAGTTCAATTTAGTAGCAATT
Found at i:82409723 original size:42 final size:42
Alignment explanation
Indices: 82409676--82409767 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
82409666 TAGCTCTTAG
* ** *
82409676 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
82409718 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
82409760 GCCCATTT
1 GCCCATTT
82409768 GGAGAGACTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:82409956 original size:26 final size:26
Alignment explanation
Indices: 82409911--82410007 Score: 153
Period size: 25 Copynumber: 3.8 Consensus size: 26
82409901 CCTCTTTAAT
82409911 AACTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
**
82409936 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
*
82409962 AAC-AGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
82409987 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
82410008 GCACTTCCTC
Statistics
Matches: 64, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
25 32 0.50
26 32 0.50
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.26
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAATA
Found at i:82410869 original size:27 final size:26
Alignment explanation
Indices: 82410808--82410871 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 26
82410798 GGGCATATTC
82410808 GTCATTTTACCATACAGGGTATTACG
1 GTCATTTTACCATACAGGGTATTACG
* *
82410834 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACA-GGG-TATTACG
*
82410861 GTCTTTTTACC
1 GTCATTTTACC
82410872 TATTAGGGGT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
26 14 0.44
27 17 0.53
28 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.19, T:0.36
Consensus pattern (26 bp):
GTCATTTTACCATACAGGGTATTACG
Found at i:82410955 original size:27 final size:27
Alignment explanation
Indices: 82410929--82411058 Score: 109
Period size: 27 Copynumber: 4.7 Consensus size: 27
82410919 ATCTACAAAC
* *
82410929 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTCAGTAATTTTATAAAT
* *
82410956 CAATGGTATTTCTA-TAATTTTTAAAAAGT
1 CAAGGGTATTTC-AGTAA-TTTTATAAA-T
* **
82410985 CAAGTGTATTTTTGTAATTTTATAAAT
1 CAAGGGTATTTCAGTAATTTTATAAAT
* ** *
82411012 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTCAGTAATTTTATAAAT
**
82411039 TGAGGGTATTTCAGTAATTT
1 CAAGGGTATTTCAGTAATTT
82411059 CACAAACCAG
Statistics
Matches: 81, Mismatches: 18, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
27 53 0.65
28 16 0.20
29 12 0.15
ACGTcount: A:0.32, C:0.07, G:0.17, T:0.44
Consensus pattern (27 bp):
CAAGGGTATTTCAGTAATTTTATAAAT
Done.