Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 239 of 295
Found at i:82411074 original size:54 final size:54
Alignment explanation
Indices: 82410905--82411171 Score: 189
Period size: 54 Copynumber: 4.9 Consensus size: 54
82410895 TATCCTACAA
* * * ** ** *
82410905 GGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTGAGGGTATTTCAGTAATTTTACAAACCAG
* * * * * * ** * *
82410959 TGGTATTTCT-ATAATTTTTAAAAAGTCAAGTGTATTTTTGTAATTTTATAAATCAG
1 GGGTATTT-TGGTAA-TTTTACAAACT-GAGGGTATTTCAGTAATTTTACAAACCAG
* *
82411015 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCAGTAATTTCACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACTGAGGGTATTTCAGTAATTTTACAAACCAG
* * * ** *
82411069 TGGTATTTTGGTAATTTTACAAGCT-AGGGCCATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTGAGGG-TATTTCAGTAATTTTACAAACCAG
* ** * *
82411123 GGGTATTTTGGTAATTCTATCTTACAG-GGGTATTTCAGTAATTTCACAA
1 GGGTATTTTGGTAATTTTA-CAAACTGAGGGTATTTCAGTAATTTTACAA
82411172 TCGAGGGTAA
Statistics
Matches: 163, Mismatches: 43, Indels: 14
0.74 0.20 0.06
Matches are distributed among these distances:
53 4 0.02
54 104 0.64
55 22 0.13
56 33 0.20
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAACTGAGGGTATTTCAGTAATTTTACAAACCAG
Found at i:82411103 original size:27 final size:27
Alignment explanation
Indices: 82410992--82411138 Score: 120
Period size: 27 Copynumber: 5.4 Consensus size: 27
82410982 AGTCAAGTGT
* * **
82410992 ATTTTTGTAATTTTATAAA-TCAGGGGT
1 ATTTTGGTAATTTTACAAACT-AGGGCC
* *
82411019 ATTTTGGTAATTTTACAAATTGAGGG-T
1 ATTTTGGTAATTTTACAAACT-AGGGCC
** * * *
82411046 ATTTCAGTAATTTCACAAACCAGTGG-T
1 ATTTTGGTAATTTTACAAACTAG-GGCC
*
82411073 ATTTTGGTAATTTTACAAGCTAGGGCC
1 ATTTTGGTAATTTTACAAACTAGGGCC
**
82411100 ATTTTGGTAATTTTACAAACTAGGGGT
1 ATTTTGGTAATTTTACAAACTAGGGCC
82411127 ATTTTGGTAATT
1 ATTTTGGTAATT
82411139 CTATCTTACA
Statistics
Matches: 100, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
26 4 0.04
27 91 0.91
28 5 0.05
ACGTcount: A:0.29, C:0.09, G:0.20, T:0.42
Consensus pattern (27 bp):
ATTTTGGTAATTTTACAAACTAGGGCC
Found at i:82411155 original size:81 final size:81
Alignment explanation
Indices: 82411019--82411171 Score: 177
Period size: 81 Copynumber: 1.9 Consensus size: 81
82411009 AATCAGGGGT
* * **
82411019 ATTTTGGTAATTTTACAAATTGAGGGTATTTCAGTAATTTCACAAACCAGTGGTATTTTGGTAAT
1 ATTTTGGTAATTTTACAAATAGAGGGTATTTCAGTAATTTCACAAACCAGGGGTATTTCAGTAAT
*
82411084 TTTACAAGCTAGGGCC
66 TTCACAAGCTAGGGCC
** **
82411100 ATTTTGGTAATTTTACAAACTAG-GGGTATTTTGGTAA-TTCTATCTTA-CAGGGGTATTTCAGT
1 ATTTTGGTAATTTTACAAA-TAGAGGGTATTTCAGTAATTTC-A-CAAACCAGGGGTATTTCAGT
82411162 AATTTCACAA
63 AATTTCACAA
82411172 TCGAGGGTAA
Statistics
Matches: 60, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
80 3 0.05
81 53 0.88
82 4 0.07
ACGTcount: A:0.29, C:0.12, G:0.19, T:0.40
Consensus pattern (81 bp):
ATTTTGGTAATTTTACAAATAGAGGGTATTTCAGTAATTTCACAAACCAGGGGTATTTCAGTAAT
TTCACAAGCTAGGGCC
Found at i:82411178 original size:27 final size:26
Alignment explanation
Indices: 82410990--82411178 Score: 105
Period size: 27 Copynumber: 7.0 Consensus size: 26
82410980 AAAGTCAAGT
* * *
82410990 GTATTTTTGTAATTTTATAAATCAGGG
1 GTATTTTGGTAATTTCA-CAATCAGGG
* *
82411017 GTATTTTGGTAATTTTACAAAT-TGAGG
1 GTATTTTGGTAATTTCAC-AATCAG-GG
** * *
82411044 GTATTTCAGTAATTTCACAAACCAGTG
1 GTATTTTGGTAATTTCAC-AATCAGGG
* *
82411071 GTATTTTGGTAATTTTACAAGCTAGGG
1 GTATTTTGGTAATTTCACAATC-AGGG
** * *
82411098 CCATTTTGGTAATTTTACAAACTAGGG
1 GTATTTTGGTAATTTCACAATC-AGGG
*
82411125 GTATTTTGGTAA-TTCTATC-TTACAGGG
1 GTATTTTGGTAATTTC-A-CAAT-CAGGG
**
82411152 GTATTTCAGTAATTTCACAATCGAGGG
1 GTATTTTGGTAATTTCACAATC-AGGG
82411179 TAAAACGGTA
Statistics
Matches: 127, Mismatches: 25, Indels: 20
0.74 0.15 0.12
Matches are distributed among these distances:
26 8 0.06
27 113 0.89
28 6 0.05
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.40
Consensus pattern (26 bp):
GTATTTTGGTAATTTCACAATCAGGG
Found at i:82411204 original size:27 final size:27
Alignment explanation
Indices: 82411170--82411341 Score: 231
Period size: 27 Copynumber: 6.4 Consensus size: 27
82411160 GTAATTTCAC
*
82411170 AATCGAGGGTAAAACGGTAATTTTTTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
*
82411197 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTTTGTA
82411224 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* * *
82411251 AATCGAGGGTAAAATGGT-ATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTGTA
*
82411277 AATTGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* * **
82411304 AATCGAGGGTGAAACGGTAATTCTACA
1 AATCGAGGGTAAAACGGTAATTTTGTA
82411331 AATCGAGGGTA
1 AATCGAGGGTA
82411342 TTTCAGTAAT
Statistics
Matches: 126, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
26 23 0.18
27 102 0.81
28 1 0.01
ACGTcount: A:0.37, C:0.08, G:0.26, T:0.30
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTTTGTA
Found at i:82411234 original size:80 final size:80
Alignment explanation
Indices: 82411158--82411341 Score: 237
Period size: 80 Copynumber: 2.3 Consensus size: 80
82411148 AGGGGTATTT
* * *
82411158 CAGTAA-TTT-CACAATCGAGGGTAAAACGGTAATTTTTTAAACTGAGGGTAAAATGGTAATTTT
1 CAGTAATTTTGCA-AATCGAGGGTAAAACGGT-ATTCTATAAACTGAGGGTAAAACGGTAATTTT
82411221 GTAAATCGAGGGTAAAA
64 GTAAATCGAGGGTAAAA
* * * *
82411238 CGGTAATTTTGTAAATCGAGGGTAAAATGGTATTCTATAAATTGAGGGTAAAACGGTAATTTTGT
1 CAGTAATTTTGCAAATCGAGGGTAAAACGGTATTCTATAAACTGAGGGTAAAACGGTAATTTTGT
*
82411303 AAATCGAGGGTGAAA
66 AAATCGAGGGTAAAA
* * *
82411318 CGGTAATTCTACAAATCGAGGGTA
1 CAGTAATTTTGCAAATCGAGGGTA
82411342 TTTCAGTAAT
Statistics
Matches: 91, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
80 70 0.77
81 20 0.22
82 1 0.01
ACGTcount: A:0.37, C:0.09, G:0.24, T:0.30
Consensus pattern (80 bp):
CAGTAATTTTGCAAATCGAGGGTAAAACGGTATTCTATAAACTGAGGGTAAAACGGTAATTTTGT
AAATCGAGGGTAAAA
Found at i:82411353 original size:54 final size:54
Alignment explanation
Indices: 82411170--82411341 Score: 258
Period size: 54 Copynumber: 3.2 Consensus size: 54
82411160 GTAATTTCAC
* * *
82411170 AATCGAGGGTAAAACGGTAATTTTTTAAA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTAAATC-GAGGGTAAAATGGTAATTCTATA
82411224 AATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATGGT-ATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATA
* * * *
82411277 AATTGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTGAAACGGTAATTCTACA
1 AATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATA
82411331 AATCGAGGGTA
1 AATCGAGGGTA
82411342 TTTCAGTAAT
Statistics
Matches: 108, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
53 48 0.44
54 59 0.55
55 1 0.01
ACGTcount: A:0.37, C:0.08, G:0.26, T:0.30
Consensus pattern (54 bp):
AATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATA
Found at i:82414898 original size:29 final size:30
Alignment explanation
Indices: 82414856--82414916 Score: 88
Period size: 29 Copynumber: 2.1 Consensus size: 30
82414846 CTTAACAAGA
82414856 AAATGCCTCTAAAATAATAA-AAAAATAAC
1 AAATGCCTCTAAAATAATAACAAAAATAAC
* * *
82414885 AAATGTCTTTAAAATAATAACAAAATTAAC
1 AAATGCCTCTAAAATAATAACAAAAATAAC
82414915 AA
1 AA
82414917 TAAAATAAGT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
29 18 0.64
30 10 0.36
ACGTcount: A:0.61, C:0.11, G:0.03, T:0.25
Consensus pattern (30 bp):
AAATGCCTCTAAAATAATAACAAAAATAAC
Found at i:82416348 original size:15 final size:15
Alignment explanation
Indices: 82416328--82416359 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
82416318 TTGATGTCAT
82416328 TAATAATTATATATA
1 TAATAATTATATATA
82416343 TAATAATTATATATA
1 TAATAATTATATATA
82416358 TA
1 TA
82416360 CTACGATACA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
TAATAATTATATATA
Found at i:82429143 original size:70 final size:72
Alignment explanation
Indices: 82429029--82429179 Score: 243
Period size: 71 Copynumber: 2.1 Consensus size: 72
82429019 GGGGAATCAT
* *
82429029 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTT-TCATTTCAAATATACAATG
1 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATACAATG
82429093 GATATCG
66 GATATCG
***
82429100 CACTTAGCAACCCCTC-GGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
1 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATACAATG
82429164 GATATCG
66 GATATCG
82429171 CACTTAGCA
1 CACTTAGCA
82429180 CCACCAATGA
Statistics
Matches: 74, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
70 28 0.38
71 46 0.62
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (72 bp):
CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATACAATG
GATATCG
Found at i:82429283 original size:104 final size:103
Alignment explanation
Indices: 82429099--82429321 Score: 367
Period size: 104 Copynumber: 2.2 Consensus size: 103
82429089 AATGGATATC
82429099 GCACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
1 GCACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
* *
82429164 GATATCGCACTTAGCACCACCAATGAACCGGGGAATCA
66 GATATCGCACATAGCACCACCAATAAACCGGGGAATCA
82429202 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTC-GGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
82429267 GGATCA-CGCACATAGCACCACCCATAAATCGGGGAATCA
65 GGAT-ATCGCACATAGCACCACCAATAAACCGGGGAATCA
**
82429306 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
82429322 TTTATATACA
Statistics
Matches: 112, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
103 17 0.15
104 94 0.84
105 1 0.01
ACGTcount: A:0.31, C:0.32, G:0.19, T:0.18
Consensus pattern (103 bp):
GCACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
GATATCGCACATAGCACCACCAATAAACCGGGGAATCA
Found at i:82429683 original size:29 final size:29
Alignment explanation
Indices: 82429650--82429713 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
82429640 TAATCCACCA
82429650 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
82429679 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
82429709 CCCAA
1 CCCAA
82429714 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:82429687 original size:30 final size:30
Alignment explanation
Indices: 82429657--82429713 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
82429647 CCACCCAACT
82429657 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
82429686 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
82429714 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:82443454 original size:101 final size:101
Alignment explanation
Indices: 82443274--82443480 Score: 260
Period size: 101 Copynumber: 2.0 Consensus size: 101
82443264 TAAATAGGAT
* * *
82443274 TAAGACCATAGCTGAAAGACGTTATAACATCAAGTGAAAGTCCACTGAGACAATAAACACGGGGT
1 TAAGACCATAGCTGAAAGACATTACAACATCAAGTGAAAGTCCACTGAGACAATAAACACAGGGT
* * *
82443339 AGTTCACTAGGATAGTAAGAACGGGGTTATATTGTG
66 AGTCCACTAGGATAGTAAAAACAGGGTTATATTGTG
** * *
82443375 TAAGACCATAGCTGAAAGACATTACAGA-ATCATA-TGAAAGT-CTGTCGGGACAATAAACACAT
1 TAAGACCATAGCTGAAAGACATTACA-ACATCA-AGTGAAAGTCCACT-GAGACAATAAACACAG
82443437 GGTAGTCCACT-GAGATAGTAAAAACAGGGTTATATTGTG
63 GGTAGTCCACTAG-GATAGTAAAAACAGGGTTATATTGTG
82443476 TAAGA
1 TAAGA
82443481 ATACAATTGA
Statistics
Matches: 92, Mismatches: 10, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
100 3 0.03
101 87 0.95
102 2 0.02
ACGTcount: A:0.39, C:0.14, G:0.23, T:0.23
Consensus pattern (101 bp):
TAAGACCATAGCTGAAAGACATTACAACATCAAGTGAAAGTCCACTGAGACAATAAACACAGGGT
AGTCCACTAGGATAGTAAAAACAGGGTTATATTGTG
Found at i:82443508 original size:101 final size:101
Alignment explanation
Indices: 82443322--82443544 Score: 247
Period size: 101 Copynumber: 2.2 Consensus size: 101
82443312 AGTCCACTGA
* * * * * * *
82443322 GACAATAAACACGGGGTAGTTCACTAGGATAGTAAGAACGGGGTTATATTGTGTAAGACCATAGC
1 GACAATAAACACAGGGTAGTCCACTAGGATAGTAAAAACAGGGTTATATTGTGTAAGAACACAAC
* *
82443387 TGAAAGACATTACAGAATCATATGAAAGTCTGT-CGG
66 TGAAAGACACTACAGAATCATATAAAAGTCT-TACGG
* *
82443423 GACAATAAACACATGGTAGTCCACT-GAGATAGTAAAAACAGGGTTATATTGTGTAAGAATACAA
1 GACAATAAACACAGGGTAGTCCACTAG-GATAGTAAAAACAGGGTTATATTGTGTAAGAACACAA
* *
82443487 TTGAAAGA-AGCTACCA-CATCATATAAAAGTCTTACGG
65 CTGAAAGACA-CTA-CAGAATCATATAAAAGTCTTACGG
* *
82443524 GACAAGAAACATAGGGTAGTC
1 GACAATAAACACAGGGTAGTC
82443545 TATCGAGACA
Statistics
Matches: 102, Mismatches: 16, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
100 3 0.03
101 97 0.95
102 2 0.02
ACGTcount: A:0.40, C:0.14, G:0.23, T:0.23
Consensus pattern (101 bp):
GACAATAAACACAGGGTAGTCCACTAGGATAGTAAAAACAGGGTTATATTGTGTAAGAACACAAC
TGAAAGACACTACAGAATCATATAAAAGTCTTACGG
Found at i:82444317 original size:71 final size:71
Alignment explanation
Indices: 82444201--82444344 Score: 252
Period size: 71 Copynumber: 2.0 Consensus size: 71
82444191 ACAGACATGT
* * *
82444201 CACACTTCCAAGCATGGTATTTTGAACAAGGTGGATTATAAGGAAGTAATTCGACCGCTATTCAT
1 CACACTTCCAAGCATGGTATTTTGAACAAGGTGGATTACAAGGAAGTAATTCAAACGCTATTCAT
82444266 CCCAAG
66 CCCAAG
*
82444272 CACACTTCCAAGCATGGTATTTTGAACAAGGTGGATTACAAGGAAGTAATTCAAATGCTATTCAT
1 CACACTTCCAAGCATGGTATTTTGAACAAGGTGGATTACAAGGAAGTAATTCAAACGCTATTCAT
82444337 CCCAAG
66 CCCAAG
82444343 CA
1 CA
82444345 GGACTTAATT
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
71 69 1.00
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (71 bp):
CACACTTCCAAGCATGGTATTTTGAACAAGGTGGATTACAAGGAAGTAATTCAAACGCTATTCAT
CCCAAG
Found at i:82446890 original size:57 final size:58
Alignment explanation
Indices: 82446814--82446929 Score: 150
Period size: 57 Copynumber: 2.0 Consensus size: 58
82446804 CATTTTCAAG
* *
82446814 TCATTTTCATTTTTAAGAAAA-C-TACATACATTTCCAAATGGTTT-T-ATTTCTCCATTT
1 TCATTATCATTTTGAAGAAAACCATA-AT-CATTTCCAAAT-GTTTCTCATTTCTCCATTT
*
82446871 TCATTATCATTTTGGAGAAAACCATAATCATTTCCAAATGTTTCTCATTTCTCCATTT
1 TCATTATCATTTTGAAGAAAACCATAATCATTTCCAAATGTTTCTCATTTCTCCATTT
82446929 T
1 T
82446930 TACCATTTCT
Statistics
Matches: 52, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
56 4 0.08
57 30 0.58
58 16 0.31
59 2 0.04
ACGTcount: A:0.29, C:0.19, G:0.06, T:0.46
Consensus pattern (58 bp):
TCATTATCATTTTGAAGAAAACCATAATCATTTCCAAATGTTTCTCATTTCTCCATTT
Found at i:82449850 original size:48 final size:48
Alignment explanation
Indices: 82449763--82449898 Score: 155
Period size: 48 Copynumber: 2.8 Consensus size: 48
82449753 TCTCATATCG
* ** *
82449763 ATGCCATGTCCCAGACATAGTCTTACACAGAATCACATATCGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGAATCTCATATCGATGCCA
* * * *
82449811 ATGCCATGTCCCAAACATGGTCGTACATGGGATCTCATATCGATGCTA
1 ATGCCATGTCCCAGACATGGTCTTACATGGAATCTCATATCGATGCCA
* * * * *
82449859 ATGCGATGTCCTAGACAAGGTCTTTCATGGTATCTCATAT
1 ATGCCATGTCCCAGACATGGTCTTACATGGAATCTCATAT
82449899 AACTCCAATG
Statistics
Matches: 73, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
48 73 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACATGGAATCTCATATCGATGCCA
Found at i:82453475 original size:6 final size:6
Alignment explanation
Indices: 82453464--82453496 Score: 57
Period size: 6 Copynumber: 5.3 Consensus size: 6
82453454 AAGATAAAAG
82453464 AAAATA AAAATA AAAATA AAAATAA AAAATA AA
1 AAAATA AAAATA AAAATA AAAAT-A AAAATA AA
82453497 GTAGAATAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 20 0.77
7 6 0.23
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:82474313 original size:509 final size:511
Alignment explanation
Indices: 82473356--82474376 Score: 2019
Period size: 509 Copynumber: 2.0 Consensus size: 511
82473346 ATATCATTGA
82473356 AAAACCCTTTCCAATTTAAGTTCGTTGTGTGATTGTATTGATGATTTTAAAACATGTCATTCATT
1 AAAACCCTTTCCAATTTAAGTTCGTTGTGTGATTGTATTGATGATTTTAAAACATGTCATTCATT
82473421 TTTAACTTGCATCACAATCAAAAGGTATTTACTTTGAAAACTTTTTGAATGTCAAGATATCACTT
66 TTTAACTTGCATCACAATCAAAAGGTATTTACTTTGAAAACTTTTTGAATGTCAAGATATCACTT
82473486 TATAATGGAAGCTTTCTGAATCAATTGTGTTCTTGCGTTTACTTTGAAAAAACATTTTTTTTTAA
131 TATAATGGAAGCTTTCTGAATCAATTGTGTTCTTGCGTTTACTTTGAAAAAACATTTTTTTTTAA
82473551 TAAAAAAAACTTGATTTCCTAATACTAGCAGTTATAACCAAAGTAAATTAAAATCCCAAATTGAA
196 TAAAAAAAACTTGATTTCCTAATACTAGCAGTTATAACCAAAGTAAATTAAAATCCCAAATTGAA
*
82473616 AATAAAATCCAAATAGGCCTTATTACATTAAAAATACCCAAAATAAAATTACTTATAATTTAAAA
261 AATAAAATCCAAAGAGGCCTTATTACATTAAAAATACCCAAAATAAAATTACTTATAATTTAAAA
82473681 ATTAAATACGGAAGTACGTGCGATTGTGTGGCCACCATTGAGTTCATCACAGCACCGACCCGCCT
326 ATTAAATACGGAAGTACGTGCGATTGTGTGGCCACCATTGAGTTCATCACAGCACCGACCCGCCT
82473746 AAGACTAGAGATTACCTGTATAGATAAATAGATAGGTAAGTTATGAAAACATAGTGTGTAATCCC
391 AAGACTAGAGATTACCTGTATAGATAAATAGATAGGTAAGTTATGAAAACATAGTGTGTAATCCC
82473811 ATATCAAATAAACAAACAGTGAGTAAA-ACAG-TTGGGCCTAAGCCCAATCTAGTG
456 ATATCAAATAAACAAACAGTGAGTAAATACAGTTTGGGCCTAAGCCCAATCTAGTG
82473865 AAAACCCTTTCCAATTTAAGTTCGTTGTGTGATTGTATTGATGATTTTAAAACATGTCATTCATT
1 AAAACCCTTTCCAATTTAAGTTCGTTGTGTGATTGTATTGATGATTTTAAAACATGTCATTCATT
82473930 TTTAACTTGCATCACAATCAAAAGGTATTTACTTTGAAAACTTTTTGAATGTCAAGATATCACTT
66 TTTAACTTGCATCACAATCAAAAGGTATTTACTTTGAAAACTTTTTGAATGTCAAGATATCACTT
82473995 TATAATGGAAGCTTTCTGAATCAATTGTGTTCTTGCGTTTACTTTGAAAAAACATTTTTTTTTAA
131 TATAATGGAAGCTTTCTGAATCAATTGTGTTCTTGCGTTTACTTTGAAAAAACATTTTTTTTTAA
82474060 TAAAAAAAACTTGATTTCCTAATACTAGCAGTTATAACCAAAGTAAATTAAAATCCCAAATTGAA
196 TAAAAAAAACTTGATTTCCTAATACTAGCAGTTATAACCAAAGTAAATTAAAATCCCAAATTGAA
82474125 AATAAAATCCAAAGAGGCCTTATTACATTAAAAATACCCAAAATAAAATTACTTATAATTTAAAA
261 AATAAAATCCAAAGAGGCCTTATTACATTAAAAATACCCAAAATAAAATTACTTATAATTTAAAA
82474190 ATTAAATACGGAAGTACGTGCGATTGTGTGGCCACCATTGAGTTCATCACAGCACCGACCCGCCT
326 ATTAAATACGGAAGTACGTGCGATTGTGTGGCCACCATTGAGTTCATCACAGCACCGACCCGCCT
82474255 AAGACTAGAGATTACCTGTATAGATAAATAGATAGGTAAGTTATGAAAACATAGTGTGTAATCCC
391 AAGACTAGAGATTACCTGTATAGATAAATAGATAGGTAAGTTATGAAAACATAGTGTGTAATCCC
82474320 ATATCAAATAAACAAACAGTGAGTAAATACAGTTTGGGCCTAAGCCCAATCTAGTG
456 ATATCAAATAAACAAACAGTGAGTAAATACAGTTTGGGCCTAAGCCCAATCTAGTG
82474376 A
1 A
82474377 CGATTCAGTA
Statistics
Matches: 509, Mismatches: 1, Indels: 2
0.99 0.00 0.00
Matches are distributed among these distances:
509 481 0.94
510 4 0.01
511 24 0.05
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.32
Consensus pattern (511 bp):
AAAACCCTTTCCAATTTAAGTTCGTTGTGTGATTGTATTGATGATTTTAAAACATGTCATTCATT
TTTAACTTGCATCACAATCAAAAGGTATTTACTTTGAAAACTTTTTGAATGTCAAGATATCACTT
TATAATGGAAGCTTTCTGAATCAATTGTGTTCTTGCGTTTACTTTGAAAAAACATTTTTTTTTAA
TAAAAAAAACTTGATTTCCTAATACTAGCAGTTATAACCAAAGTAAATTAAAATCCCAAATTGAA
AATAAAATCCAAAGAGGCCTTATTACATTAAAAATACCCAAAATAAAATTACTTATAATTTAAAA
ATTAAATACGGAAGTACGTGCGATTGTGTGGCCACCATTGAGTTCATCACAGCACCGACCCGCCT
AAGACTAGAGATTACCTGTATAGATAAATAGATAGGTAAGTTATGAAAACATAGTGTGTAATCCC
ATATCAAATAAACAAACAGTGAGTAAATACAGTTTGGGCCTAAGCCCAATCTAGTG
Found at i:82474780 original size:27 final size:27
Alignment explanation
Indices: 82474750--82474835 Score: 131
Period size: 27 Copynumber: 3.2 Consensus size: 27
82474740 ATACATCTCA
82474750 TAGGGGCATAATAGTCATTTTATCACT
1 TAGGGGCATAATAGTCATTTTATCACT
*
82474777 TA-GGGCATAATAGTCATTTTATCACA
1 TAGGGGCATAATAGTCATTTTATCACT
*
82474803 CAGGGGCATAATAGTCATTTTATCGA-T
1 TAGGGGCATAATAGTCATTTTATC-ACT
82474830 TAGGGG
1 TAGGGG
82474836 TCCAGGTACA
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
26 24 0.45
27 28 0.53
28 1 0.02
ACGTcount: A:0.30, C:0.14, G:0.22, T:0.34
Consensus pattern (27 bp):
TAGGGGCATAATAGTCATTTTATCACT
Found at i:82474782 original size:26 final size:26
Alignment explanation
Indices: 82474753--82474834 Score: 121
Period size: 26 Copynumber: 3.1 Consensus size: 26
82474743 CATCTCATAG
82474753 GGGCATAATAGTCATTTTATCACTTA
1 GGGCATAATAGTCATTTTATCACTTA
**
82474779 GGGCATAATAGTCATTTTATCACACA
1 GGGCATAATAGTCATTTTATCACTTA
82474805 GGGGCATAATAGTCATTTTATCGA-TTA
1 -GGGCATAATAGTCATTTTATC-ACTTA
82474832 GGG
1 GGG
82474835 GTCCAGGTAC
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
26 27 0.54
27 22 0.44
28 1 0.02
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.34
Consensus pattern (26 bp):
GGGCATAATAGTCATTTTATCACTTA
Found at i:82479028 original size:39 final size:40
Alignment explanation
Indices: 82478982--82479078 Score: 142
Period size: 41 Copynumber: 2.4 Consensus size: 40
82478972 CATTTTTTAC
* * *
82478982 TAAAACGCTGCTAAAAA-AGGGCATTAGCGGCGCTTTCGG
1 TAAAACGCCGCTAAAAACAGAGCATTAGCGGCACTTTCGG
82479021 TAAAACGCCGCTAAAAACCAGAGCATTAGCGGCACTTTCGG
1 TAAAACGCCGCTAAAAA-CAGAGCATTAGCGGCACTTTCGG
*
82479062 TAAAACGCCACTAAAAA
1 TAAAACGCCGCTAAAAA
82479079 TCCCATAACC
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
39 16 0.31
41 36 0.69
ACGTcount: A:0.37, C:0.24, G:0.22, T:0.18
Consensus pattern (40 bp):
TAAAACGCCGCTAAAAACAGAGCATTAGCGGCACTTTCGG
Found at i:82479642 original size:186 final size:186
Alignment explanation
Indices: 82479294--82479667 Score: 732
Period size: 186 Copynumber: 2.0 Consensus size: 186
82479284 ATTATGATCG
82479294 TTAACTATGGTTTAAGGTTTAGGAGTTAACTAGTATTTGAAGGTTTAGGATGAATTCGGGGTTTA
1 TTAACTATGGTTTAAGGTTTAGGAGTTAACTAGTATTTGAAGGTTTAGGATGAATTCGGGGTTTA
82479359 TGGATTATGATTTAGGGTTTAAAGGTTAGGGTTAAAGTTTAGAATGGGGACAATTATTAACTTCT
66 TGGATTATGATTTAGGGTTTAAAGGTTAGGGTTAAAGTTTAGAATGGGGACAATTATTAACTTCT
82479424 TAAGAGATAATTTCCTTTCCAGATTCTACTTGGGATGCTATTAAGAAAGGGTGATT
131 TAAGAGATAATTTCCTTTCCAGATTCTACTTGGGATGCTATTAAGAAAGGGTGATT
82479480 TTAACTATGGTTTAAGGTTTAGGAGTTAACTAGTATTTGAAGGTTTAGGATGAATTCGGGGTTTA
1 TTAACTATGGTTTAAGGTTTAGGAGTTAACTAGTATTTGAAGGTTTAGGATGAATTCGGGGTTTA
82479545 TGGATTATGATTTAGGGTTTAAAGGTTAGGGTTAAAGTTTAGAAT-GGGACAATTATTAACTTCT
66 TGGATTATGATTTAGGGTTTAAAGGTTAGGGTTAAAGTTTAGAATGGGGACAATTATTAACTTCT
82479609 TAAGAGATAATTTCCTTTCCAGATTCTTACTTGGGATGCTATTAAGAAAGGGTGATT
131 TAAGAGATAATTTCCTTTCCAGATTC-TACTTGGGATGCTATTAAGAAAGGGTGATT
82479666 TT
1 TT
82479668 GAATGTGGAA
Statistics
Matches: 187, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
185 45 0.24
186 142 0.76
ACGTcount: A:0.29, C:0.07, G:0.25, T:0.39
Consensus pattern (186 bp):
TTAACTATGGTTTAAGGTTTAGGAGTTAACTAGTATTTGAAGGTTTAGGATGAATTCGGGGTTTA
TGGATTATGATTTAGGGTTTAAAGGTTAGGGTTAAAGTTTAGAATGGGGACAATTATTAACTTCT
TAAGAGATAATTTCCTTTCCAGATTCTACTTGGGATGCTATTAAGAAAGGGTGATT
Found at i:82483600 original size:47 final size:47
Alignment explanation
Indices: 82483463--82483775 Score: 428
Period size: 47 Copynumber: 6.6 Consensus size: 47
82483453 TATTTGAATA
82483463 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
82483512 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
82483561 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
82483608 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * * *
82483655 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGAAG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * * * *
82483702 GATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGAAG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
82483749 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
82483776 TCCCGAAGGG
Statistics
Matches: 251, Mismatches: 13, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
47 190 0.76
49 61 0.24
ACGTcount: A:0.33, C:0.09, G:0.31, T:0.27
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:82484032 original size:37 final size:37
Alignment explanation
Indices: 82483894--82484031 Score: 249
Period size: 37 Copynumber: 3.7 Consensus size: 37
82483884 CCGAGCTCTA
82483894 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
82483931 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
*
82483968 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
* *
82484005 AAGACCCGATAACTTCGTGTGGAGATT
1 AAGACCCGATGACTACGTGTGGAGATT
82484032 TCGTCTGAGC
Statistics
Matches: 98, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 98 1.00
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
Found at i:82485488 original size:9 final size:9
Alignment explanation
Indices: 82485474--82485541 Score: 57
Period size: 9 Copynumber: 7.6 Consensus size: 9
82485464 CCCAAGGTTA
*
82485474 TTGATGATT
1 TTGATGATG
*
82485483 TTGATGATC
1 TTGATGATG
*
82485492 TTAATGATG
1 TTGATGATG
*
82485501 ATGATGATG
1 TTGATGATG
*
82485510 ATGATGATG
1 TTGATGATG
82485519 TTGAT-ACTG
1 TTGATGA-TG
* *
82485528 ATGTTGATG
1 TTGATGATG
82485537 TTGAT
1 TTGAT
82485542 CTCGATGATT
Statistics
Matches: 47, Mismatches: 10, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
8 1 0.02
9 45 0.96
10 1 0.02
ACGTcount: A:0.26, C:0.03, G:0.26, T:0.44
Consensus pattern (9 bp):
TTGATGATG
Found at i:82485501 original size:3 final size:3
Alignment explanation
Indices: 82485495--82485541 Score: 51
Period size: 3 Copynumber: 15.7 Consensus size: 3
82485485 GATGATCTTA
* * *
82485495 ATG ATG ATG ATG ATG ATG ATG ATG TTG AT- ACTG ATG TTG ATG TTG
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG A-TG ATG ATG ATG ATG
82485540 AT
1 AT
82485542 CTCGATGATT
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
2 1 0.03
3 34 0.94
4 1 0.03
ACGTcount: A:0.28, C:0.02, G:0.30, T:0.40
Consensus pattern (3 bp):
ATG
Found at i:82485548 original size:18 final size:18
Alignment explanation
Indices: 82485495--82485550 Score: 62
Period size: 18 Copynumber: 3.1 Consensus size: 18
82485485 GATGATCTTA
*
82485495 ATGATGATGATGA-TGATG
1 ATGATGTTGAT-ACTGATG
82485513 ATGATGTTGATACTGATG
1 ATGATGTTGATACTGATG
*
82485531 TTGATGTTGAT-CTCGATG
1 ATGATGTTGATACT-GATG
82485549 AT
1 AT
82485551 TATACCCTTG
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
17 3 0.09
18 30 0.91
ACGTcount: A:0.27, C:0.05, G:0.29, T:0.39
Consensus pattern (18 bp):
ATGATGTTGATACTGATG
Found at i:82488015 original size:40 final size:40
Alignment explanation
Indices: 82487934--82488111 Score: 236
Period size: 40 Copynumber: 4.5 Consensus size: 40
82487924 CAACCAAGTA
* * *
82487934 CCTTCGGGATTTAG-CCGGACATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
82487973 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
82488013 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
** * * *
82488053 CCTTCGGGACTTAG-CTTGAAATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
82488093 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
82488112 TTATCATCCG
Statistics
Matches: 123, Mismatches: 12, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
39 18 0.15
40 103 0.84
41 2 0.02
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:82495312 original size:12 final size:12
Alignment explanation
Indices: 82495295--82495321 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
82495285 TGCCTTTTCC
82495295 AGAACAAGACTT
1 AGAACAAGACTT
82495307 AGAACAAGACTT
1 AGAACAAGACTT
82495319 AGA
1 AGA
82495322 TGAAAATATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.15, G:0.19, T:0.15
Consensus pattern (12 bp):
AGAACAAGACTT
Found at i:82496513 original size:17 final size:19
Alignment explanation
Indices: 82496491--82496528 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
82496481 ATCTGTCAAG
82496491 TATT-AATAA-ATTTTTAC
1 TATTAAATAATATTTTTAC
82496508 TATTAAATAATATTTTTAC
1 TATTAAATAATATTTTTAC
82496527 TA
1 TA
82496529 CTATATTGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 4 0.21
18 5 0.26
19 10 0.53
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (19 bp):
TATTAAATAATATTTTTAC
Found at i:82497113 original size:21 final size:21
Alignment explanation
Indices: 82497087--82497127 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
82497077 ACTTAGAGCG
82497087 GAGGCAGCAGCGAGGGAGGCT
1 GAGGCAGCAGCGAGGGAGGCT
82497108 GAGGCAGCAGCGAGGGAGGC
1 GAGGCAGCAGCGAGGGAGGC
82497128 GGAGCAGAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.24, C:0.20, G:0.54, T:0.02
Consensus pattern (21 bp):
GAGGCAGCAGCGAGGGAGGCT
Found at i:82497500 original size:43 final size:43
Alignment explanation
Indices: 82497428--82497663 Score: 260
Period size: 43 Copynumber: 5.5 Consensus size: 43
82497418 ACTGGGCAAA
* * * * *
82497428 TTAGCGGCGTTTTTTTACAAAAGCACCGCTAAAAGTACAGGTCT
1 TTAGCGGCG-TTTTTTATAAAAGCGCCGCTAAAGGTCCTGGTCT
* * *
82497472 ATAGCGGCGTTTTTTATAAAAGCGCCGCTAAAGTTCTTGGTCT
1 TTAGCGGCGTTTTTTATAAAAGCGCCGCTAAAGGTCCTGGTCT
* * * * *
82497515 ATAGCGGCGTTTTCTAAAAAAGCACCGCTAAAGGTTCTGGTCT
1 TTAGCGGCGTTTTTTATAAAAGCGCCGCTAAAGGTCCTGGTCT
* * *
82497558 TTGGCGGCG-CTTTTATAAAAAACGCCGCTAAAGGTCCTGGTCT
1 TTAGCGGCGTTTTTTAT-AAAAGCGCCGCTAAAGGTCCTGGTCT
* *
82497601 TTGGCGGCGTTTTTT-TAAGAGCGCCGCTAAAGGTCCTGGTCT
1 TTAGCGGCGTTTTTTATAAAAGCGCCGCTAAAGGTCCTGGTCT
* *
82497643 TTAGCGGTGTTTTTTAGAAAA
1 TTAGCGGCGTTTTTTATAAAA
82497664 AAACGCCGCG
Statistics
Matches: 160, Mismatches: 29, Indels: 7
0.82 0.15 0.04
Matches are distributed among these distances:
42 41 0.26
43 107 0.67
44 12 0.08
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.32
Consensus pattern (43 bp):
TTAGCGGCGTTTTTTATAAAAGCGCCGCTAAAGGTCCTGGTCT
Found at i:82498828 original size:56 final size:53
Alignment explanation
Indices: 82498696--82498891 Score: 175
Period size: 55 Copynumber: 3.6 Consensus size: 53
82498686 ATTAGGGTTT
* * * *
82498696 AAGGATACTATGTATGACCATGCCAAGGCATGGCAATT-AGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGC-ATTGA-TAA-G-TTCATAAGGC
*
82498751 AGGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTT-C-ATAAGGC
* ** * *
82498806 AAAAGG-T-CTCATGTAAGACCATGCCAAGGTATGGCATTGGTGAGTTCATAAGGC
1 --AAGGATAC-CATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCATAAGGC
**
82498860 AAGGATACCATGTAAGACCATGTTGAGACATG
1 AAGGATACCATGTAAGACCATGTCAAGACATG
82498892 CAAATTGTAA
Statistics
Matches: 116, Mismatches: 16, Indels: 20
0.76 0.11 0.13
Matches are distributed among these distances:
52 6 0.05
53 22 0.19
54 14 0.12
55 38 0.33
56 33 0.28
57 3 0.03
ACGTcount: A:0.34, C:0.16, G:0.26, T:0.24
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCATAAGGC
Found at i:82506435 original size:55 final size:52
Alignment explanation
Indices: 82506374--82506621 Score: 250
Period size: 55 Copynumber: 4.8 Consensus size: 52
82506364 ATTAGGGTTT
*
82506374 AAGGATACCATGTAAGACCATGTCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAA-GTTTCTAA--C
* *
82506429 AAGGATACCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTACCATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTT-TC-TAA--C
* * * *
82506484 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGAG--T-T--C
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTTTCTAAC
82506530 AAGGATACCATGTAAGACCATGTCAAGACATGGCAA-TGGTAAGTTTC-AA-
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTTTCTAAC
* * *
82506579 AAGGATACCACGTAAGACCATGACAAGTCATGGCAA-TGGTAAG
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAG
82506622 GTACCCGTGT
Statistics
Matches: 167, Mismatches: 16, Indels: 26
0.80 0.08 0.12
Matches are distributed among these distances:
45 4 0.02
46 33 0.20
47 1 0.01
48 1 0.01
49 40 0.24
50 1 0.01
53 3 0.02
54 8 0.05
55 72 0.43
56 4 0.02
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.21
Consensus pattern (52 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTTTCTAAC
Found at i:82506544 original size:46 final size:48
Alignment explanation
Indices: 82506483--82506621 Score: 176
Period size: 49 Copynumber: 2.9 Consensus size: 48
82506473 TACCATAAGG
* * * * *
82506483 CAAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAG-TT
1 CAAAGGATACCATGTAAGACCATGACAAGACATGGCAATGGTAAGTTT
*
82506529 C-AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTT
1 CAAAGGATACCATGTAAGACCATGACAAGACATGGCAATGGTAAGTTT
* *
82506576 CAAAAGGATACCACGTAAGACCATGACAAGTCATGGCAATGGTAAG
1 C-AAAGGATACCATGTAAGACCATGACAAGACATGGCAATGGTAAG
82506622 GTACCCGTGT
Statistics
Matches: 81, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
45 4 0.05
46 34 0.42
47 3 0.04
49 40 0.49
ACGTcount: A:0.35, C:0.19, G:0.25, T:0.20
Consensus pattern (48 bp):
CAAAGGATACCATGTAAGACCATGACAAGACATGGCAATGGTAAGTTT
Found at i:82517984 original size:11 final size:10
Alignment explanation
Indices: 82517969--82518027 Score: 57
Period size: 10 Copynumber: 5.7 Consensus size: 10
82517959 TGCAAAATAC
82517969 TTATTATATT
1 TTATTATATT
82517979 CTTATTAT-TT
1 -TTATTATATT
82517989 TATATTATATT
1 T-TATTATATT
**
82518000 TCCTTATATT
1 TTATTATATT
82518010 TTATTCATATT
1 TTATT-ATATT
*
82518021 ATATTAT
1 TTATTAT
82518028 TATATATAAC
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
9 1 0.03
10 20 0.50
11 19 0.47
ACGTcount: A:0.29, C:0.07, G:0.00, T:0.64
Consensus pattern (10 bp):
TTATTATATT
Found at i:82528583 original size:93 final size:93
Alignment explanation
Indices: 82528424--82528596 Score: 256
Period size: 93 Copynumber: 1.9 Consensus size: 93
82528414 CGCCCATAAG
* * * * * *
82528424 CGAACTCAGACTGAACTCAATGAGCTCGGGCGTTCACATCCATGAGTGAACTCAGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCAGACATTCACATCCATAAGTGAACTCAGACTCAACTCA
82528489 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* ** *
82528517 CGAACTCAGACTCAACTCAACGAGTTCAGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCAGACATTCACATCCATAAGTGAACTCAGACTCAACTCA
82528582 ACGAGTTCGGATGCC
66 ACGAGTTCGGATGCC
82528597 CAAACATCCT
Statistics
Matches: 70, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGCTCAGACATTCACATCCATAAGTGAACTCAGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:82528611 original size:46 final size:48
Alignment explanation
Indices: 82528417--82528605 Score: 160
Period size: 46 Copynumber: 4.0 Consensus size: 48
82528407 TGTAACCCGC
* * * * *
82528417 CCATAAGCGAACTCAGACTGAACTCAATGAGCTCGG--GCGT-TCACAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAT-ACAT
*
82528463 CCATGAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTA--TACAT
* * * * * *
82528513 -C-TCA-CGAACTCAGACTCAACTCAACGAGTTCAGA--CATTTGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTATACAT
* * *
82528556 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTATACAT
82528604 CC
1 CC
82528606 TAGTGACATG
Statistics
Matches: 112, Mismatches: 21, Indels: 18
0.74 0.14 0.12
Matches are distributed among these distances:
43 4 0.04
44 1 0.01
45 4 0.04
46 58 0.52
47 28 0.25
48 11 0.10
49 1 0.01
50 4 0.04
51 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.21
Consensus pattern (48 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTATACAT
Found at i:82533477 original size:206 final size:206
Alignment explanation
Indices: 82532596--82533445 Score: 1348
Period size: 206 Copynumber: 4.1 Consensus size: 206
82532586 GCAGATCTGG
*
82532596 CTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
1 CTGAAGC-AGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
*
82532661 GATTTAGCTTTCACGTGCTTACG-ATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTTA
65 GATTTAGCTTTCACGTGCTTACGCA-GAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTTA
*
82532725 GAGAACAAATCGAAGTTTGGAGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAACCT
129 GAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAACCT
82532790 TCAGATGATTAGA
194 TCAGATGATTAGA
*
82532803 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGA-AAATCAAAGACATAGCT
1 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGA-ACAAATCGAAGACATAGCT
** * *
82532867 GATTTAGCTTTTGCATTCTTACGCAGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTTAG
65 GATTTAGCTTTCACGTGCTTACGCAGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTTAG
82532932 AGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAACCTT
130 AGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAACCTT
82532997 CAGATGATTAGA
195 CAGATGATTAGA
* *
82533009 CTGAAGTAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
* * *
82533074 ATTTAGCTTTCGCGTTCTTACGCAGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGA
66 ATTTAGCTTTCACGTGCTTACGCAGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTTAGA
* * * * * * *
82533139 GAAAAAATCAAATTTTGGCATCTCCATATTCTACGGAGGGCAGACACATAGTAGATCTAACCTTC
131 GAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAACCTTC
82533204 AGATGATTAGA
196 AGATGATTAGA
* *
82533215 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCGG
1 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
*
82533280 ATTTAGCTTTCACGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATT-TTCAG
66 ATTTAGCTTTCACGTGCTTACGCAGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTT-AG
* * * *
82533344 AGAACAAATCGAAGTTTGGCGTCTCCATATTAGACGGAGGGCAGAGACATAGCAGATTTAACCTT
130 AGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAACCTT
82533409 CAGATGATTACG-
195 CAGATGATTA-GA
* * * *
82533421 CTGAAGGAAATCTAAGATGATTTGG
1 CTGAAGCAGATCCAAGATGGTTTGG
82533446 CATGTATGTA
Statistics
Matches: 598, Mismatches: 40, Indels: 11
0.92 0.06 0.02
Matches are distributed among these distances:
205 1 0.00
206 587 0.98
207 10 0.02
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (206 bp):
CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
ATTTAGCTTTCACGTGCTTACGCAGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTTAGA
GAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAACCTTC
AGATGATTAGA
Found at i:82535284 original size:12 final size:11
Alignment explanation
Indices: 82535269--82535342 Score: 58
Period size: 12 Copynumber: 6.4 Consensus size: 11
82535259 TTCCATTATT
82535269 TTTTATCATATA
1 TTTTAT-ATATA
*
82535281 TTTTATCTATA
1 TTTTATATATA
**
82535292 AATTATATAATA
1 TTTTATAT-ATA
* *
82535304 TTGTATATCTTA
1 TTTTATAT-ATA
*
82535316 TTTTATATATT
1 TTTTATATATA
82535327 TCTTTATATATA
1 T-TTTATATATA
82535339 TTTT
1 TTTT
82535343 TAAAAATTGT
Statistics
Matches: 47, Mismatches: 13, Indels: 5
0.72 0.20 0.08
Matches are distributed among these distances:
11 14 0.30
12 33 0.70
ACGTcount: A:0.32, C:0.05, G:0.01, T:0.61
Consensus pattern (11 bp):
TTTTATATATA
Found at i:82535775 original size:14 final size:14
Alignment explanation
Indices: 82535756--82535785 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
82535746 TCTATCTTTC
*
82535756 TTATATATTTTTTA
1 TTATATATTATTTA
82535770 TTATATATTATTTA
1 TTATATATTATTTA
82535784 TT
1 TT
82535786 TTGTACTAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (14 bp):
TTATATATTATTTA
Found at i:82535841 original size:11 final size:10
Alignment explanation
Indices: 82535826--82535884 Score: 57
Period size: 10 Copynumber: 5.7 Consensus size: 10
82535816 TGCAAAATAC
82535826 TTATTATATT
1 TTATTATATT
82535836 CTTATTAT-TT
1 -TTATTATATT
82535846 TATATTATATT
1 T-TATTATATT
**
82535857 TCCTTATATT
1 TTATTATATT
82535867 TTATTCATATT
1 TTATT-ATATT
*
82535878 ATATTAT
1 TTATTAT
82535885 TATATATAAC
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
9 1 0.03
10 20 0.50
11 19 0.47
ACGTcount: A:0.29, C:0.07, G:0.00, T:0.64
Consensus pattern (10 bp):
TTATTATATT
Found at i:82566911 original size:49 final size:50
Alignment explanation
Indices: 82566804--82566914 Score: 161
Period size: 49 Copynumber: 2.2 Consensus size: 50
82566794 CAGGTTTCTT
* * * *
82566804 ACACTAGCTTCAGACCAGGGTTGCTCAAATAAGCCAGTTCGATGTTGCTA
1 ACACTAGCTTCAAACCAAGGTTGCTCAAATAAGCCAGTTCAATGATGCTA
* *
82566854 ACACTAGCTTCAAACCAAGGTTGCTCAAA-GAGCTAGTTCAATGATGCTA
1 ACACTAGCTTCAAACCAAGGTTGCTCAAATAAGCCAGTTCAATGATGCTA
82566903 ACACTAGCTTCA
1 ACACTAGCTTCA
82566915 GAGAATCCGC
Statistics
Matches: 55, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
49 28 0.51
50 27 0.49
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.25
Consensus pattern (50 bp):
ACACTAGCTTCAAACCAAGGTTGCTCAAATAAGCCAGTTCAATGATGCTA
Found at i:82567812 original size:30 final size:30
Alignment explanation
Indices: 82567778--82567835 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
82567768 TTTTCAAGCA
* *
82567778 TAGGGGTAAAATGGTCATTTTGCCAAAGTC
1 TAGGGGCAAAATGGTCATTTTACCAAAGTC
82567808 TAGGGGCAAAATGGTCATTTTACCAAAG
1 TAGGGGCAAAATGGTCATTTTACCAAAG
82567836 ATATGAATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCATTTTACCAAAGTC
Found at i:82568222 original size:46 final size:46
Alignment explanation
Indices: 82568164--82568384 Score: 175
Period size: 46 Copynumber: 4.7 Consensus size: 46
82568154 ATTCCTGTGT
* *
82568164 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACATGATGA
*
82568210 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAG-CA-TTGA-GA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCACATGATGA
* ** * * * * *
82568255 CGGGGATTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCAAGACGTA
1 --GAG-CCAGTGTAAGACATGTCTGGGACATGCATCAGCCACATGATG-A
*
82568305 -AGCCAGTGTAAGACATGTCTGGGACATGCAT-AGGCTACGA-GATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCA-GCCAC-ATGATGA
* * *
82568350 TAGTCAATGTAAGACCATGTCTGGGACATGGCATC
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATC
82568385 GACCTGAGAG
Statistics
Matches: 139, Mismatches: 21, Indels: 27
0.74 0.11 0.14
Matches are distributed among these distances:
45 3 0.02
46 64 0.46
47 48 0.35
48 22 0.16
49 1 0.01
50 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.22
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACATGATGA
Found at i:82577393 original size:47 final size:47
Alignment explanation
Indices: 82577339--82578121 Score: 1359
Period size: 47 Copynumber: 16.5 Consensus size: 47
82577329 TTTGAATAAG
82577339 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
82577386 TGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAA
1 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
82577433 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
82577482 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
82577529 TGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAA
1 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
82577576 TGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAA
1 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
82577623 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
82577670 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
82577719 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
82577766 TGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAA
1 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* ** *
82577813 TGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGACCTGATTAA
1 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
82577860 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
82577907 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
82577956 TGTGAAAGTGTATATATGTGATACGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
82578003 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* * * * * * *
82578050 TGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGA
1 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
82578097 TGTGAAAGTGTATAAATGTGATAAG
1 TGTGAAAGTGTATATATGTGATAAG
82578122 TCCCGAATGG
Statistics
Matches: 706, Mismatches: 24, Indels: 12
0.95 0.03 0.02
Matches are distributed among these distances:
47 566 0.80
49 140 0.20
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.30
Consensus pattern (47 bp):
TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
Found at i:82577688 original size:190 final size:188
Alignment explanation
Indices: 82577339--82578121 Score: 1377
Period size: 190 Copynumber: 4.1 Consensus size: 188
82577329 TTTGAATAAG
82577339 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
82577404 TGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG
66 TGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGG
82577469 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
129 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
82577529 TGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
82577594 TGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
66 TGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
82577659 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
131 GATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
82577719 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
*
82577784 TGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCC
66 TGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
** *
82577849 GACCTGATTAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
131 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
82577907 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
82577972 TGTGATACGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
64 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
* * * * * * *
82578037 CCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGA
129 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
82578097 TGTGAAAGTGTATAAATGTGATAAG
1 TGTGAAAGTGTATATATGTGATAAG
82578122 TCCCGAATGG
Statistics
Matches: 569, Mismatches: 20, Indels: 10
0.95 0.03 0.02
Matches are distributed among these distances:
188 108 0.19
190 461 0.81
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.30
Consensus pattern (188 bp):
TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
TGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
Found at i:82577754 original size:237 final size:237
Alignment explanation
Indices: 82577339--82578121 Score: 1422
Period size: 237 Copynumber: 3.3 Consensus size: 237
82577329 TTTGAATAAG
* *
82577339 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATATG
*
82577404 TGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG
66 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG
82577469 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
131 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
82577534 AAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAA
196 AAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAA
*
82577576 TGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATATG
82577641 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG
66 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG
82577706 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
131 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
82577771 AAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAA
196 AAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAA
* *
82577813 TGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGACCTGATTAATGTGAAAGTGTATATATG
1 TGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATATG
82577878 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG
66 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG
*
82577943 CCGATGTGATGAATGTGAAAGTGTATATATGTGATACGGCCTAATGGCCGATGTGATGAATGTGA
131 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
*
82578008 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
196 AAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAA
* * * * * * * *
82578050 TGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATG
1 TGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATATG
82578115 TGATAAG
66 TGATAAG
82578122 TCCCGAATGG
Statistics
Matches: 529, Mismatches: 17, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
237 529 1.00
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.30
Consensus pattern (237 bp):
TGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATATG
TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG
CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
AAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAA
Found at i:82578378 original size:37 final size:37
Alignment explanation
Indices: 82578244--82578377 Score: 232
Period size: 37 Copynumber: 3.6 Consensus size: 37
82578234 GCTTTAAACT
82578244 CCCGATGACTACGTGTGGAGATTATGTCCGGGTAAGA
1 CCCGATGACTACGTGTGGAGATTATGTCCGGGTAAGA
82578281 CCCGATGACTACGTGTGGAGATTATGTCCGGGTAAGA
1 CCCGATGACTACGTGTGGAGATTATGTCCGGGTAAGA
*
82578318 CCCGATGACTACGTGTGGAGATTTTGTCCGGGTAAGA
1 CCCGATGACTACGTGTGGAGATTATGTCCGGGTAAGA
* * *
82578355 CCCGATAACTTCATGTGGAGATT
1 CCCGATGACTACGTGTGGAGATT
82578378 TCGTCTGAGC
Statistics
Matches: 93, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 93 1.00
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
CCCGATGACTACGTGTGGAGATTATGTCCGGGTAAGA
Found at i:82580009 original size:40 final size:40
Alignment explanation
Indices: 82579668--82579997 Score: 500
Period size: 40 Copynumber: 8.2 Consensus size: 40
82579658 GGGCTAAATC
82579668 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
1 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
*
82579708 CTGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
1 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
*
82579748 CCGAAGAGCATTCGTGCTAGTGATGTATTCGGACTAAGTT
1 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
* *
82579788 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTC
1 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
82579828 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
1 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
82579868 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
1 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
* * ***
82579908 CCGAAGAGCATTCGTGCTAGTGATATATCTGTG-CTAAACC
1 CCGAAGAGCATTCGTGCTAGTGATGTATCCG-GACTAAGTT
* * * * * * *
82579948 CCGAAGAGCATTTGTGCTGGTGTTATATCCGGGCTAGGTC
1 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
82579988 CCGAAGAGCA
1 CCGAAGAGCA
82579998 ATCATGCTGG
Statistics
Matches: 268, Mismatches: 20, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
39 1 0.00
40 266 0.99
41 1 0.00
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
Found at i:82583113 original size:32 final size:32
Alignment explanation
Indices: 82583072--82583137 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
82583062 TAAGTGATTA
82583072 AACGTTGAGTAAATTCAATCATAATAGGACAT
1 AACGTTGAGTAAATTCAATCATAATAGGACAT
82583104 AACGTTGAGTAAATTCAATCATAATAGGACAT
1 AACGTTGAGTAAATTCAATCATAATAGGACAT
82583136 AA
1 AA
82583138 TGAGTTGATT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.45, C:0.12, G:0.15, T:0.27
Consensus pattern (32 bp):
AACGTTGAGTAAATTCAATCATAATAGGACAT
Found at i:82584083 original size:47 final size:47
Alignment explanation
Indices: 82584030--82584436 Score: 688
Period size: 47 Copynumber: 8.6 Consensus size: 47
82584020 TATTTGAATA
82584030 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
82584077 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
82584124 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
82584173 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
82584220 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
82584267 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
82584316 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
82584363 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
82584410 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
82584437 TCCCGAATGG
Statistics
Matches: 342, Mismatches: 14, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
47 249 0.73
49 93 0.27
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:82584156 original size:96 final size:94
Alignment explanation
Indices: 82584030--82584436 Score: 688
Period size: 96 Copynumber: 4.3 Consensus size: 94
82584020 TATTTGAATA
82584030 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
82584095 TGTGATAAGGCCTAATAGCCGATGTGATG
66 TGTGATAAGGCCTAATAGCCGATGTGATG
82584124 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
82584189 TATGTGATAAGGCCTAATAGCCGATGTGATG
64 TATGTGATAAGGCCTAATAGCCGATGTGATG
82584220 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
*
82584285 TATGTGATAAGGCCTAATGGCCGATGTGATG
64 TATGTGATAAGGCCTAATAGCCGATGTGATG
82584316 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * * * * * *
82584381 TGTGACAGGGCCGAGTGGCCAACGTGATG
66 TGTGATAAGGCCTAATAGCCGATGTGATG
* *
82584410 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
82584437 TCCCGAATGG
Statistics
Matches: 300, Mismatches: 9, Indels: 8
0.95 0.03 0.03
Matches are distributed among these distances:
94 113 0.38
96 187 0.62
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (94 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATAGCCGATGTGATG
Found at i:82584194 original size:143 final size:143
Alignment explanation
Indices: 82584030--82584436 Score: 719
Period size: 143 Copynumber: 2.9 Consensus size: 143
82584020 TATTTGAATA
82584030 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
82584095 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
66 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
82584160 GGCCGATGTGATG
131 GGCCGATGTGATG
*
82584173 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
82584238 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
66 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
82584303 GGCCGATGTGATG
131 GGCCGATGTGATG
82584316 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * * * * * *
82584381 TGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
66 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
82584437 TCCCGAATGG
Statistics
Matches: 254, Mismatches: 10, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
141 10 0.04
142 1 0.00
143 243 0.96
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (143 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
GGCCGATGTGATG
Found at i:82584693 original size:37 final size:37
Alignment explanation
Indices: 82584555--82584692 Score: 231
Period size: 37 Copynumber: 3.7 Consensus size: 37
82584545 CTGAGCTCTA
82584555 AAGACCCGATGACTACATGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACATGTGGAGATTATGTCCGGGT
*
82584592 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACATGTGGAGATTATGTCCGGGT
* *
82584629 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACATGTGGAGATTATGTCCGGGT
* *
82584666 AAGACCCGATAACTTCATGTGGAGATT
1 AAGACCCGATGACTACATGTGGAGATT
82584693 TCGTCTGAGC
Statistics
Matches: 96, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 96 1.00
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATGACTACATGTGGAGATTATGTCCGGGT
Found at i:82586692 original size:47 final size:46
Alignment explanation
Indices: 82586631--82586859 Score: 212
Period size: 47 Copynumber: 4.9 Consensus size: 46
82586621 GTCAATCCTG
*
82586631 TGTGAGCTAGTGTAAGACATGTCTGGGACATGGCATCGACAATGAGA
1 TGTGAGCCAGTGTAAGACATGTCTGGGACATGGCATCGAC-ATGAGA
* * ** * * *
82586678 TGGGGGTTAGTGTAAGACATGTCTAGGACAT-GCATCGGCCTCGAGA
1 TGTGAGCCAGTGTAAGACATGTCTGGGACATGGCATCGACAT-GAGA
* * * * *
82586724 CGTAAGCCAGTGTAAGACATGTCTAGGACAT-GCATCGGCTACGAGA
1 TGTGAGCCAGTGTAAGACATGTCTGGGACATGGCATCGAC-ATGAGA
* * *
82586770 TGAT-AGTCAGTGTAAGACCATGCCTGGGACATGGCATCGACTTGAGA
1 TG-TGAGCCAGTGTAAGA-CATGTCTGGGACATGGCATCGACATGAGA
* * *
82586817 TATGAGCCAGTGTAAGACCTTATCTGGGACATGGCATCGACAT
1 TGTGAGCCAGTGTAAGA-CATGTCTGGGACATGGCATCGACAT
82586860 TTTACCCACG
Statistics
Matches: 149, Mismatches: 27, Indels: 12
0.79 0.14 0.06
Matches are distributed among these distances:
45 1 0.01
46 62 0.42
47 79 0.53
48 7 0.05
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (46 bp):
TGTGAGCCAGTGTAAGACATGTCTGGGACATGGCATCGACATGAGA
Found at i:82586738 original size:46 final size:45
Alignment explanation
Indices: 82586686--82586834 Score: 174
Period size: 46 Copynumber: 3.2 Consensus size: 45
82586676 GATGGGGGTT
*
82586686 AGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGACGTAAGCC
1 AGTGTAAGACATGTCTAGGACATGCATCGG-CTCGAGATGTAAGCC
*
82586732 AGTGTAAGACATGTCTAGGACATGCATCGGCTACGAGATG-ATAGTC
1 AGTGTAAGACATGTCTAGGACATGCATCGGCT-CGAGATGTA-AGCC
* * * * * *
82586778 AGTGTAAGACCATGCCTGGGACATGGCATCGACTTGAGATATGAGCC
1 AGTGTAAGA-CATGTCTAGGACAT-GCATCGGCTCGAGATGTAAGCC
82586825 AGTGTAAGAC
1 AGTGTAAGAC
82586835 CTTATCTGGG
Statistics
Matches: 89, Mismatches: 9, Indels: 10
0.82 0.08 0.09
Matches are distributed among these distances:
45 3 0.03
46 49 0.55
47 29 0.33
48 8 0.09
ACGTcount: A:0.30, C:0.20, G:0.29, T:0.21
Consensus pattern (45 bp):
AGTGTAAGACATGTCTAGGACATGCATCGGCTCGAGATGTAAGCC
Found at i:82586800 original size:93 final size:93
Alignment explanation
Indices: 82586639--82586858 Score: 237
Period size: 93 Copynumber: 2.4 Consensus size: 93
82586629 TGTGTGAGCT
* * * * * *
82586639 AGTGTAAGACATGTCTGGGACATGGCATCGACAATGAGATGGGGGTTAGTGTAAGACATGTCTAG
1 AGTGTAAGACATGTCTAGGACATGGCATCGACAACGAGATGAGAGTCAGTGTAAGACATGCCTAG
* *
82586704 GACAT-GCATCGGCCTCGAGACGTAAGCC
66 GACATGGCATC-GACTCGAGACATAAGCC
* * * *
82586732 AGTGTAAGACATGTCTAGGACAT-GCATCGGCTACGAGATGATAGTCAGTGTAAGACCATGCCTG
1 AGTGTAAGACATGTCTAGGACATGGCATCGACAACGAGATGAGAGTCAGTGTAAGA-CATGCCTA
* * *
82586796 GGACATGGCATCGACTTGAGATATGAGCC
65 GGACATGGCATCGACTCGAGACATAAGCC
* * *
82586825 AGTGTAAGACCTTATCTGGGACATGGCATCGACA
1 AGTGTAAGA-CATGTCTAGGACATGGCATCGACA
82586859 TTTTACCCAC
Statistics
Matches: 103, Mismatches: 20, Indels: 6
0.80 0.16 0.05
Matches are distributed among these distances:
92 25 0.24
93 55 0.53
94 16 0.16
95 7 0.07
ACGTcount: A:0.29, C:0.19, G:0.30, T:0.22
Consensus pattern (93 bp):
AGTGTAAGACATGTCTAGGACATGGCATCGACAACGAGATGAGAGTCAGTGTAAGACATGCCTAG
GACATGGCATCGACTCGAGACATAAGCC
Found at i:82593806 original size:13 final size:14
Alignment explanation
Indices: 82593776--82593817 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
82593766 TGTATATTAA
82593776 TATTAAAATGAATT
1 TATTAAAATGAATT
*
82593790 TATTAAAAT-ATTT
1 TATTAAAATGAATT
*
82593803 TATTTAAAATTAATT
1 TA-TTAAAATGAATT
82593818 AGCTACCATT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 5 0.21
14 16 0.67
15 3 0.12
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (14 bp):
TATTAAAATGAATT
Found at i:82594632 original size:36 final size:36
Alignment explanation
Indices: 82594592--82594663 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
82594582 CAAAAACACT
*
82594592 TCAAATCATCCCAGATATCAAGAAATCATATTGTTA
1 TCAAATCATCCCAAATATCAAGAAATCATATTGTTA
82594628 TCAAATCATCCCAAATATCAAGAAATCATATTGTTA
1 TCAAATCATCCCAAATATCAAGAAATCATATTGTTA
82594664 AGTTCCAATT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.43, C:0.19, G:0.07, T:0.31
Consensus pattern (36 bp):
TCAAATCATCCCAAATATCAAGAAATCATATTGTTA
Found at i:82596401 original size:27 final size:27
Alignment explanation
Indices: 82596371--82596573 Score: 232
Period size: 27 Copynumber: 7.6 Consensus size: 27
82596361 ATATTGAGTC
* * *
82596371 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAAAT
*
82596398 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAAAT
*
82596425 CGCACACTTAGTGCTACAT-ATCAATCT
1 CGCACACTTAGTGCTACATAATCAA-AT
* ** *
82596452 CGCACACTTAGTGCCACATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAAAT
* **
82596479 CGCACACTTAGTGC-ATCAT-TTCATTT
1 CGCACACTTAGTGCTA-CATAATCAAAT
* *
82596505 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAAAT
*
82596532 CGCACACTTAGTGCTACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAAAT
82596559 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
82596574 GTACAATTTA
Statistics
Matches: 156, Mismatches: 15, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
26 28 0.18
27 124 0.79
28 4 0.03
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAAAT
Found at i:82596538 original size:80 final size:80
Alignment explanation
Indices: 82596371--82596572 Score: 237
Period size: 80 Copynumber: 2.5 Consensus size: 80
82596361 ATATTGAGTC
* * * * * * * **
82596371 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGC-TACGTAATCAAATCGCACACTTA
1 CGCACACTTAGTGCCACATAGTCAAATCGCACACTTAGTGCAT-CAT-TTCATTTCGCACACTTA
* *
82596435 GTGCTACATATCAATCT
64 GTGCAACATATCAATAT
* *
82596452 CGCACACTTAGTGCCACATGGTCAATTCGCACACTTAGTGCATCATTTCATTTCGCACACTTAGT
1 CGCACACTTAGTGCCACATAGTCAAATCGCACACTTAGTGCATCATTTCATTTCGCACACTTAGT
82596517 GCAACATAGTCAA-AT
66 GCAACATA-TCAATAT
*
82596532 CGCACACTTAGTGCTACATAGTCAAATCGCACACTTAGTGC
1 CGCACACTTAGTGCCACATAGTCAAATCGCACACTTAGTGC
82596573 TGTACAATTT
Statistics
Matches: 104, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
80 62 0.60
81 41 0.39
82 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.27
Consensus pattern (80 bp):
CGCACACTTAGTGCCACATAGTCAAATCGCACACTTAGTGCATCATTTCATTTCGCACACTTAGT
GCAACATATCAATAT
Found at i:82607998 original size:27 final size:27
Alignment explanation
Indices: 82607968--82608174 Score: 231
Period size: 27 Copynumber: 7.7 Consensus size: 27
82607958 ATATTGAGTC
* * *
82607968 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAAAT
*
82607995 CGCACACTTAGTGCTACGTAATC--AT
1 CGCACACTTAGTGCTACATAATCAAAT
*
82608020 CGCACACTTAGTGCTACATAATCAATCT
1 CGCACACTTAGTGCTACATAATCAA-AT
* ** *
82608048 CGCACACTTAGTGCCACATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAAAT
** **
82608075 CGCACACTTAGTGC-ATCATTTTCATTT
1 CGCACACTTAGTGCTA-CATAATCAAAT
*
82608102 CGCACACTTAGTGCAACATAATCAAAT
1 CGCACACTTAGTGCTACATAATCAAAT
*
82608129 CGCACACTTAGTGCTACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAAAT
82608156 CGCACACTTAGTGCGTACA
1 CGCACACTTAGTGC-TACA
82608175 ATTTACTCCC
Statistics
Matches: 155, Mismatches: 19, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
25 23 0.15
26 1 0.01
27 103 0.66
28 28 0.18
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAAAT
Found at i:82613157 original size:40 final size:40
Alignment explanation
Indices: 82613105--82613288 Score: 178
Period size: 40 Copynumber: 4.6 Consensus size: 40
82613095 TAACTCATTC
* *
82613105 AATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAGAAACTCGCACA
* *
82613145 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAGAAACTCGCACA
* * *
82613185 AAGGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAGAAACTCGCACA
* ** ** *
82613225 AAGGCCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAGAAAC-TCGCACA
*
82613266 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
82613289 CAGCATTCAA
Statistics
Matches: 127, Mismatches: 11, Indels: 11
0.85 0.07 0.07
Matches are distributed among these distances:
39 8 0.06
40 108 0.85
41 11 0.09
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAGAAACTCGCACA
Found at i:82613221 original size:80 final size:80
Alignment explanation
Indices: 82613108--82613288 Score: 201
Period size: 80 Copynumber: 2.3 Consensus size: 80
82613098 CTCATTCAAT
* * *
82613108 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAAGGCCTTC-GGATCTTAACCCGGATA-
*
82613171 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
* * **
82613187 GGCCTTCGGGACTTAACCCGGA-ATTAGTATCTCGCACAAAGGCCTTCGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTA-AAACTCGCACAAAGGCCTTCGGATCTTAACCCGGATA
82613251 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
82613268 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
82613289 CAGCATTCAA
Statistics
Matches: 87, Mismatches: 9, Indels: 10
0.82 0.08 0.09
Matches are distributed among these distances:
79 6 0.07
80 70 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAAGGCCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:82620973 original size:39 final size:40
Alignment explanation
Indices: 82620896--82621042 Score: 120
Period size: 40 Copynumber: 3.7 Consensus size: 40
82620886 TAGCTCCTCG
* * *
82620896 TTCAAGTGCCTTCGGGACATAGCCCGG-TTATAGTAACTCA
1 TTCAA-TGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
* *
82620936 TTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCG
1 TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** * * * *
82620975 CACGAATGCCTTCGGGACTTAACCCGGAAT-TAGTATCTCG
1 TTC-AATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** *
82621015 CACAAAGGCCTTCGGGACTTAACCCGGA
1 TTC-AATGCCTTCGGGACTTAACCCGGA
82621043 ATTAATAACT
Statistics
Matches: 92, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
39 27 0.29
40 65 0.71
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
Found at i:82621001 original size:79 final size:80
Alignment explanation
Indices: 82620902--82621120 Score: 193
Period size: 79 Copynumber: 2.8 Consensus size: 80
82620892 CTCGTTCAAG
* * ** * *
82620902 TGCCTTCGGGACATAGCCCGG-TTATAGTAACTCATTC-AATGCCTTCGGGACTTAACCCGGATT
1 TGCCTTCGGGACATAACCCGGAAT-TAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGA-A
82620965 TTAA-AACTCGCACGAA
64 TTAATAACTCGCACGAA
* * *
82620981 TGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAGGCCTTCGGGACTTAACCCGGAATT
1 TGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATT
82621046 AATAACTCGCAC-AA
66 AATAACTCGCACGAA
* * ** * * *
82621060 -ACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGA-CATAACCCGGAAT-TAGTAACTCA-CACAAAGGCCTTCGGGACTTAACCCGGA
82621121 CAGCATTCAA
Statistics
Matches: 117, Mismatches: 17, Indels: 13
0.80 0.12 0.09
Matches are distributed among these distances:
77 5 0.04
78 39 0.33
79 40 0.34
80 33 0.28
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (80 bp):
TGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATT
AATAACTCGCACGAA
Found at i:82621080 original size:38 final size:39
Alignment explanation
Indices: 82620942--82621120 Score: 186
Period size: 40 Copynumber: 4.5 Consensus size: 39
82620932 CTCATTCAAT
* *
82620942 GCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACGAAT
1 GCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCAC-AAA
* *
82620982 GCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAA
1 GCCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAA
82621021 GGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAA
1 -GCCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAA
** * * *
82621061 -CCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACAAA
1 GCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACAAA
*
82621100 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
82621121 CAGCATTCAA
Statistics
Matches: 119, Mismatches: 12, Indels: 15
0.82 0.08 0.10
Matches are distributed among these distances:
37 5 0.04
38 18 0.15
39 13 0.11
40 80 0.67
41 3 0.03
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.23
Consensus pattern (39 bp):
GCCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAA
Found at i:82621119 original size:78 final size:80
Alignment explanation
Indices: 82620942--82621120 Score: 210
Period size: 78 Copynumber: 2.3 Consensus size: 80
82620932 CTCATTCAAT
* *
82620942 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGACTTAACCCGGAATTA
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACGAATACCTTCGGGACTTAACCCGGAATTA
*
82621007 GTATCTCGCACAAAG
66 GTATCTAGCACAAAG
**
82621022 GCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCAC-AA-ACCTTC-GGATCTTAGTCCGG-AT
1 GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACGAATACCTTCGGGA-CTTAACCCGGAAT
82621082 ATAGTCA-CTTAGCACAAA-
64 -TAGT-ATC-TAGCACAAAG
*
82621100 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
82621121 CAGCATTCAA
Statistics
Matches: 88, Mismatches: 6, Indels: 12
0.83 0.06 0.11
Matches are distributed among these distances:
77 5 0.06
78 38 0.43
79 15 0.17
80 30 0.34
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.23
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACGAATACCTTCGGGACTTAACCCGGAATTA
GTATCTAGCACAAAG
Found at i:82626240 original size:21 final size:21
Alignment explanation
Indices: 82626214--82626257 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
82626204 ACATTATGAA
82626214 AGCTAGTGTAAGACCATGTCT
1 AGCTAGTGTAAGACCATGTCT
82626235 AGCTAGTGTAAGACCATGTCT
1 AGCTAGTGTAAGACCATGTCT
82626256 AG
1 AG
82626258 GATATGGCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (21 bp):
AGCTAGTGTAAGACCATGTCT
Found at i:82626277 original size:69 final size:66
Alignment explanation
Indices: 82626168--82626302 Score: 189
Period size: 69 Copynumber: 2.0 Consensus size: 66
82626158 CACTCGTGTG
* *
82626168 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAAAGCTAGTGTAAGACCATGT
1 AGCTAGTGTAAGACATGTCTAGGACATGCATCGGCCACATTACGAAAGCTAGTGTAAGA-CATGT
82626233 CT
65 CT
* ***
82626235 AGCTAGTGTAAGACCATGTCTAGGATATGGCATCGGCCACATTACGAGTTCTAGTGTAAGACATG
1 AGCTAGTGTAAGA-CATGTCTAGGACAT-GCATCGGCCACATTACGAAAGCTAGTGTAAGACATG
82626300 TCT
64 TCT
82626303 GGGACATGCA
Statistics
Matches: 60, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
67 13 0.22
68 19 0.32
69 28 0.47
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (66 bp):
AGCTAGTGTAAGACATGTCTAGGACATGCATCGGCCACATTACGAAAGCTAGTGTAAGACATGTC
T
Found at i:82626344 original size:46 final size:44
Alignment explanation
Indices: 82626287--82626409 Score: 149
Period size: 46 Copynumber: 2.7 Consensus size: 44
82626277 TACGAGTTCT
*
82626287 AGTGTAAGACATGTCTGGGACATGCATTGGCCT-CGAGACGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGG-CTACGAGACGT--GCC
* * * *
82626333 AGTGTAAGACATGTCTGAGACATGCATCGGCTATGAGATGTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGACGTGCC
82626377 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
82626410 ACAGATATGC
Statistics
Matches: 68, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
44 11 0.16
45 15 0.22
46 42 0.62
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.24
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGACGTGCC
Found at i:82627149 original size:25 final size:25
Alignment explanation
Indices: 82627121--82627172 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
82627111 TGTGTAAGTA
82627121 AGGGTGGCAAAGAGGCTTGGTAAAT
1 AGGGTGGCAAAGAGGCTTGGTAAAT
82627146 AGGGTGGCAAAGAGGCTTGGTAAAT
1 AGGGTGGCAAAGAGGCTTGGTAAAT
82627171 AG
1 AG
82627173 CATTATATCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.33, C:0.08, G:0.40, T:0.19
Consensus pattern (25 bp):
AGGGTGGCAAAGAGGCTTGGTAAAT
Found at i:82638145 original size:13 final size:13
Alignment explanation
Indices: 82638127--82638153 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
82638117 CCTAGCCCTA
82638127 TTTTTTATGTTTT
1 TTTTTTATGTTTT
82638140 TTTTTTATGTTTT
1 TTTTTTATGTTTT
82638153 T
1 T
82638154 GAGATTCTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.07, C:0.00, G:0.07, T:0.85
Consensus pattern (13 bp):
TTTTTTATGTTTT
Found at i:82641279 original size:48 final size:48
Alignment explanation
Indices: 82641078--82641306 Score: 170
Period size: 48 Copynumber: 4.8 Consensus size: 48
82641068 GATATGTGTG
* * * *
82641078 ATCCCATGTAAGACCATGTCTGGGACATGGCATTAGCATCGAAATATG
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTA
* *
82641126 ATCCCATGTAAGACCATGTCTGGGACATGGCATTCGTATC-ACTATG-A
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGA-TATGTA
* * * * * * *
82641173 GA-CATCGTGTATGACCACAG-CTGGG-C-T---ATCGGCTTCGATATGCATG
1 -ATC-CCATGTAAGACCA-TGTCTGGGACATGGCATTGGCATCGATATG--TA
*
82641219 ATCCCATGTAAGACCATGTCTGGGACATAGCATTGGCATCGATATGTA
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTA
* * * * *
82641267 ATCCTATGTAAGACCATATTTGGGATATGGCTTTGGCATC
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATC
82641307 CTATTACGTG
Statistics
Matches: 139, Mismatches: 27, Indels: 30
0.71 0.14 0.15
Matches are distributed among these distances:
43 9 0.06
44 2 0.01
45 16 0.12
46 3 0.02
47 4 0.03
48 91 0.65
49 1 0.01
50 13 0.09
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (48 bp):
ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTA
Found at i:82644179 original size:47 final size:48
Alignment explanation
Indices: 82644083--82644182 Score: 130
Period size: 48 Copynumber: 2.1 Consensus size: 48
82644073 TCCTATGCTG
* *
82644083 ACCACAACATAAGAAACACTTCACTAACTCATTATGTGGTTTCCCATT
1 ACCATAACATAAGAAACACTTCACTAACTCATTATGAGGTTTCCCATT
** ** *
82644131 ACCATAACATAAGAAGTACTTCACTTTC-CATTATGAGGTTTCCTATT
1 ACCATAACATAAGAAACACTTCACTAACTCATTATGAGGTTTCCCATT
82644178 ACCAT
1 ACCAT
82644183 CATTTCTACC
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
47 22 0.49
48 23 0.51
ACGTcount: A:0.34, C:0.25, G:0.09, T:0.32
Consensus pattern (48 bp):
ACCATAACATAAGAAACACTTCACTAACTCATTATGAGGTTTCCCATT
Found at i:82647729 original size:56 final size:58
Alignment explanation
Indices: 82647625--82647739 Score: 155
Period size: 56 Copynumber: 2.0 Consensus size: 58
82647615 ATAGAAATGG
*
82647625 TGAAAATAGAGAAATAGGAAACATTTGGAAATGAAAGTGGTTTTCTCCAAAAT-AAAAT
1 TGAAAATAGAGAAATA-GAAACATTTGGAAATGAAAGTGATTTTCTCCAAAATGAAAAT
* **
82647683 TGAAAATGGAGAAAT-GAAGACATTTGG-AATGAGTGTGATTTTCTCCAAAATGAAAAT
1 TGAAAATAGAGAAATAGAA-ACATTTGGAAATGAAAGTGATTTTCTCCAAAATGAAAAT
82647740 AAAAAATGAC
Statistics
Matches: 51, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
56 24 0.47
57 13 0.25
58 14 0.27
ACGTcount: A:0.45, C:0.07, G:0.21, T:0.27
Consensus pattern (58 bp):
TGAAAATAGAGAAATAGAAACATTTGGAAATGAAAGTGATTTTCTCCAAAATGAAAAT
Found at i:82658544 original size:43 final size:42
Alignment explanation
Indices: 82658433--82658544 Score: 97
Period size: 41 Copynumber: 2.7 Consensus size: 42
82658423 GATATTCACG
* * *
82658433 TGTAAGACCATGTCTGGGACATCT-GCATCGTATCTGATTTCG
1 TGTAAGACCATGTCTGGGACGT-TGGCATCGTATCTGATTACA
* * * *
82658475 T-TAAGACCTTGTCTAGGATAG-AGGCATCG-ATACTGAATTACA
1 TGTAAGACCATGTCTGGGA-CGTTGGCATCGTAT-CTG-ATTACA
82658517 TGTAAGACCATGTCTGGGACGTTGGCAT
1 TGTAAGACCATGTCTGGGACGTTGGCAT
82658545 TGTACACGTT
Statistics
Matches: 53, Mismatches: 11, Indels: 11
0.71 0.15 0.15
Matches are distributed among these distances:
40 2 0.04
41 24 0.45
42 7 0.13
43 20 0.38
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACGTTGGCATCGTATCTGATTACA
Found at i:82666918 original size:52 final size:52
Alignment explanation
Indices: 82666835--82666938 Score: 190
Period size: 52 Copynumber: 2.0 Consensus size: 52
82666825 CAATGATTAC
**
82666835 CTATGTATTAATATTATGTGATATCTGTGATTCCTTATTGATCTGAAATGTT
1 CTATGTATTAATATTATGTGATATCACTGATTCCTTATTGATCTGAAATGTT
82666887 CTATGTATTAATATTATGTGATATCACTGATTCCTTATTGATCTGAAATGTT
1 CTATGTATTAATATTATGTGATATCACTGATTCCTTATTGATCTGAAATGTT
82666939 TTGTCTATCT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 50 1.00
ACGTcount: A:0.28, C:0.11, G:0.14, T:0.47
Consensus pattern (52 bp):
CTATGTATTAATATTATGTGATATCACTGATTCCTTATTGATCTGAAATGTT
Found at i:82668784 original size:46 final size:45
Alignment explanation
Indices: 82668687--82668856 Score: 193
Period size: 46 Copynumber: 3.7 Consensus size: 45
82668677 ATTGTGAGCT
* * *
82668687 AGTGTAAGACATGTCTGGGACATAGCATCGGCATTGAGACGAGTGCT
1 AGTGTAAGACATGTCTGGGACATAGCATCGGCCTCGAGAC-A-TGCC
*
82668734 AGTGTAAGACATGTCTGGGATAT-GCATCGGCCTCGAGACATAAGCC
1 AGTGTAAGACATGTCTGGGACATAGCATCGGCCTCGAGACAT--GCC
* * *
82668780 AGTGTAAGACATGTCTGGGACA-CGCATCGG-CTACGAGACGTGTC
1 AGTGTAAGACATGTCTGGGACATAGCATCGGCCT-CGAGACATGCC
*
82668824 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACATAGCATCGGC
82668857 ATAGATATGC
Statistics
Matches: 108, Mismatches: 8, Indels: 14
0.83 0.06 0.11
Matches are distributed among these distances:
44 12 0.11
45 16 0.15
46 58 0.54
47 22 0.20
ACGTcount: A:0.26, C:0.21, G:0.31, T:0.22
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATAGCATCGGCCTCGAGACATGCC
Found at i:82668856 original size:92 final size:93
Alignment explanation
Indices: 82668687--82668856 Score: 249
Period size: 92 Copynumber: 1.8 Consensus size: 93
82668677 ATTGTGAGCT
*
82668687 AGTGTAAGACATGTCTGGGACATAGCATCGGCATTGAGACGAGTGCTAGTGTAAGACATGTCTGG
1 AGTGTAAGACATGTCTGGGACATAGCATCGGCATCGAGACGAGTGCTAGTGTAAGACATGTCTGG
*
82668752 GATATGCATCGGCCTCGAGACATAAGCC
66 GACATGCATCGGCCTCGAGACATAAGCC
* *
82668780 AGTGTAAGACATGTCTGGGACA-CGCATCGGC-TACGAGACGTGT-C-AGTGTAAGACCATGTCT
1 AGTGTAAGACATGTCTGGGACATAGCATCGGCAT-CGAGACGAGTGCTAGTGTAAGA-CATGTCT
82668841 GGGACATGGCATCGGC
64 GGGACAT-GCATCGGC
82668857 ATAGATATGC
Statistics
Matches: 70, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
90 9 0.13
91 15 0.21
92 24 0.34
93 22 0.31
ACGTcount: A:0.26, C:0.21, G:0.31, T:0.22
Consensus pattern (93 bp):
AGTGTAAGACATGTCTGGGACATAGCATCGGCATCGAGACGAGTGCTAGTGTAAGACATGTCTGG
GACATGCATCGGCCTCGAGACATAAGCC
Found at i:82672750 original size:11 final size:11
Alignment explanation
Indices: 82672734--82672764 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
82672724 TTCTAGAATA
82672734 ATGAAATAAGC
1 ATGAAATAAGC
82672745 ATGAAATAAGC
1 ATGAAATAAGC
82672756 ATGAAATAA
1 ATGAAATAA
82672765 CATATGCGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.58, C:0.06, G:0.16, T:0.19
Consensus pattern (11 bp):
ATGAAATAAGC
Found at i:82673172 original size:13 final size:13
Alignment explanation
Indices: 82673144--82673181 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
82673134 AGACCAATTT
82673144 AAAAAATAAAATA
1 AAAAAATAAAATA
82673157 AAAACAATAAAA-A
1 AAAA-AATAAAATA
82673170 AAAGAAATAAAA
1 AAA-AAATAAAA
82673182 CAGAAAGCTA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 15 0.65
14 8 0.35
ACGTcount: A:0.84, C:0.03, G:0.03, T:0.11
Consensus pattern (13 bp):
AAAAAATAAAATA
Found at i:82676130 original size:5 final size:5
Alignment explanation
Indices: 82676115--82676157 Score: 63
Period size: 5 Copynumber: 8.8 Consensus size: 5
82676105 TAGTTTTAAG
82676115 TTTTA -TTTA TTTTA TTTTA TTGTT- TTTTA TTTTA TTTTA TTTT
1 TTTTA TTTTA TTTTA TTTTA TT-TTA TTTTA TTTTA TTTTA TTTT
82676158 CCAGATTGAT
Statistics
Matches: 35, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
4 6 0.17
5 27 0.77
6 2 0.06
ACGTcount: A:0.16, C:0.00, G:0.02, T:0.81
Consensus pattern (5 bp):
TTTTA
Found at i:82676813 original size:6 final size:6
Alignment explanation
Indices: 82676802--82676841 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
82676792 GAATAAAAAC
* * *
82676802 AATAAA AATAAA AGTACA AATAAA AACAAA AATAAA AATA
1 AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AATA
82676842 TATGAAACAT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.78, C:0.05, G:0.03, T:0.15
Consensus pattern (6 bp):
AATAAA
Found at i:82682090 original size:93 final size:93
Alignment explanation
Indices: 82681977--82682149 Score: 292
Period size: 93 Copynumber: 1.9 Consensus size: 93
82681967 CGCCCATAAG
** * *
82681977 CGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAGTGAACTGGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
82682042 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
*
82682070 CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
82682135 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
82682150 CAAATATCCC
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.30, G:0.23, T:0.20
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:82682145 original size:46 final size:46
Alignment explanation
Indices: 82681970--82682148 Score: 211
Period size: 46 Copynumber: 3.9 Consensus size: 46
82681960 TGTAACCCGC
* *
82681970 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATGCTCGCAT
* * *
82682016 CCATAAGTGAACTGGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATG-CTCG---CAT
* * *
82682066 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATGCTCGCAT
* *
82682109 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATGC
82682149 CCAAATATCC
Statistics
Matches: 112, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 70 0.62
47 30 0.27
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATGCTCGCAT
Found at i:82682796 original size:152 final size:144
Alignment explanation
Indices: 82682522--82682869 Score: 480
Period size: 152 Copynumber: 2.4 Consensus size: 144
82682512 ATTTAAAATA
* **
82682522 TTGAAAACAGAAATTGAAATTACCTCAGCGTGACCCGAGGCTCAACTCATTTCTCACAATATAAG
1 TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCACAATATAAG
*
82682587 TTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCA
66 TTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCGCA
*
82682652 ATATGAGTTGATTTTT
131 ATATGAGTTGA--ATT
* * * * *
82682668 TTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
1 TTGAAA-ACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCACAATATAA
* * * *
82682733 GTTGATTTTTTTTTTGACAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCCACTCACCT
65 GTTGA-----ATTTTGAAAACAGAAATTGAAATTACCTCAGCATGTCCCGAGGCTCAACTCACCT
82682798 CTCGCAATATGAGTTGAATT
125 CTCGCAATATGAGTTGAATT
* *
82682818 TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGTTCAACTTATTT
1 TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTT
82682870 TGAACAGAAA
Statistics
Matches: 177, Mismatches: 19, Indels: 9
0.86 0.09 0.04
Matches are distributed among these distances:
146 6 0.03
147 55 0.31
149 41 0.23
150 8 0.05
152 67 0.38
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.31
Consensus pattern (144 bp):
TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCACAATATAAG
TTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCGCA
ATATGAGTTGAATT
Found at i:82682857 original size:72 final size:73
Alignment explanation
Indices: 82682522--82682864 Score: 438
Period size: 72 Copynumber: 4.6 Consensus size: 73
82682512 ATTTAAAATA
* * ** * *
82682522 TTGAAAACAGAAATTGAAATTACCTCAGCGTGACCCGAGGCTCAACTCATTTCTCACAATATAAG
1 TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
82682587 TTGA-ATT
66 TTGATATT
*
82682594 TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
82682659 TTGATTTTT
66 TTGA-TATT
* * * * **
82682668 TTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
1 TTGAAA-ACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
82682733 GTTGATTTTTTTT
65 GTTGA----TATT
* * *
82682746 TTGACAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCCACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
82682811 TTGA-ATT
66 TTGATATT
* *
82682818 TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGTTCAACT
1 TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACT
82682865 TATTTTGAAC
Statistics
Matches: 239, Mismatches: 26, Indels: 12
0.86 0.09 0.04
Matches are distributed among these distances:
72 108 0.45
74 8 0.03
75 56 0.23
77 57 0.24
78 10 0.04
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (73 bp):
TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATATT
Found at i:82682880 original size:49 final size:49
Alignment explanation
Indices: 82682823--82682918 Score: 156
Period size: 49 Copynumber: 2.0 Consensus size: 49
82682813 GAATTTTGAA
* * *
82682823 AACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGTTCAACTTATTTTG
1 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTTG
*
82682872 AACAGAAATTGAAATTACTTCAACGTGTCTTGAGGCTCAACTCATTT
1 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
82682919 CTCGCAATAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
49 43 1.00
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Consensus pattern (49 bp):
AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTTG
Found at i:82682915 original size:121 final size:121
Alignment explanation
Indices: 82682751--82682990 Score: 390
Period size: 121 Copynumber: 2.0 Consensus size: 121
82682741 TTTTTTTGAC
* *
82682751 AACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCCACTCACCTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAATTACCTCAACATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA
* * *
82682816 TTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGTTCAACTTATTTTG
66 TTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTTG
* * * **
82682872 AACAGAAATTGAAATTACTTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAATTACCTCAACATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA
82682937 TTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
66 TTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
82682991 CTCACAATAT
Statistics
Matches: 109, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
121 109 1.00
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.31
Consensus pattern (121 bp):
AACAGAAATTGAAATTACCTCAACATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA
TTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTTG
Found at i:82682952 original size:72 final size:72
Alignment explanation
Indices: 82682872--82683012 Score: 264
Period size: 72 Copynumber: 2.0 Consensus size: 72
82682862 ACTTATTTTG
* *
82682872 AACAGAAATTGAAATTACTTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGAA
82682937 TTTTGAA
66 TTTTGAA
82682944 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGAA
1 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGAA
82683009 TTTT
66 TTTT
82683013 TTTTTTGAAA
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
72 67 1.00
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33
Consensus pattern (72 bp):
AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGAA
TTTTGAA
Found at i:82683082 original size:81 final size:76
Alignment explanation
Indices: 82682872--82683092 Score: 238
Period size: 72 Copynumber: 2.9 Consensus size: 76
82682862 ACTTATTTTG
* * * *
82682872 AACAGAAATTGAAATTACTTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAAATACCTCAACGTGACTCGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
82682937 ----TTTTGAA
66 TTTTTTTTGAA
* * * *
82682944 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGAA
1 AACAGAAATTGAAAATACCTCAACGTGACTCGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
82683009 TTTTTTTTTTGAA
66 --TTTTTTTTGAA
* ** *
82683022 AGACAGAAATTGAAAATACCTCAGCATGTGAAC-CGAGGCTCAACTCACCTCTCGCAATATGAGC
1 A-ACAGAAATTGAAAATACCTCA--ACGTG-ACTCGAGGCTCAACTCATTTCTCGCAATATGAGT
82683086 TG-ATTTT
62 TGAATTTT
82683093 GAAAAAGTAG
Statistics
Matches: 129, Mismatches: 10, Indels: 14
0.84 0.07 0.09
Matches are distributed among these distances:
72 63 0.49
78 12 0.09
79 20 0.16
80 1 0.01
81 32 0.25
82 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (76 bp):
AACAGAAATTGAAAATACCTCAACGTGACTCGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
TTTTTTTTGAA
Found at i:82683161 original size:54 final size:55
Alignment explanation
Indices: 82683061--82683166 Score: 144
Period size: 54 Copynumber: 1.9 Consensus size: 55
82683051 GAACCGAGGC
* *
82683061 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGCAGAAATTGAAAAGGT
* * *
82683115 TCAACCCACCTCTCGCAATATGAGTTGATTCTTG-AACAGCATAAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAAAAAGCAGAAATTGAAAA
82683167 CAGAAATTGA
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
54 38 0.84
55 7 0.16
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.27
Consensus pattern (55 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGCAGAAATTGAAAAGGT
Found at i:82683227 original size:140 final size:140
Alignment explanation
Indices: 82683017--82683644 Score: 1132
Period size: 140 Copynumber: 4.5 Consensus size: 140
82683007 AATTTTTTTT
82683017 TTGAAAGACAGAAATTGAAAATACCTCAGCATGTGAACC-GAGGCTCAACTCACCTCTCGCAATA
1 TTGAAA-ACAGAAATTGAAAATACCTCAGC--GTG-ACCTGAGGCTCAACTCACCTCTCGCAATA
82683081 TGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTC
62 TGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTC
* *
82683146 TTGAACAGCATAAA
127 TTGAACAACGTAAA
82683160 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
* *
82683225 CTGATTTTGAAAAGGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
82683290 ACAACGTAAA
131 ACAACGTAAA
* *
82683300 TTGAAAACAGAAATTGAAAATACCTTAGCGTGACCTGAGGCTCAACTCACCTTTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
82683365 CTGATTTGGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
82683430 ACAACGTAAA
131 ACAACGTAAA
*
82683440 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCACAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
82683505 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
82683570 ACAACGTAAA
131 ACAACGTAAA
*
82683580 TTGAAAACAGAAATTGAAAATACCTCAACGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
82683645 TTGAAATTAA
Statistics
Matches: 469, Mismatches: 15, Indels: 5
0.96 0.03 0.01
Matches are distributed among these distances:
139 3 0.01
140 437 0.93
142 23 0.05
143 6 0.01
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.25
Consensus pattern (140 bp):
TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
ACAACGTAAA
Found at i:82683301 original size:54 final size:54
Alignment explanation
Indices: 82683201--82683306 Score: 135
Period size: 54 Copynumber: 1.9 Consensus size: 54
82683191 GACCTGAGGC
* *
82683201 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAGGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAACGTA-AAATTGAAAAGGT
* *
82683255 TCAACCCACTTCTCGCAATATGAGTTGATTCTTGAACAACGT-AAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAA-AACGTAAAATTGAAAA
82683307 CAGAAATTGA
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
54 32 0.71
55 9 0.20
56 4 0.09
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.28
Consensus pattern (54 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAACGTAAAATTGAAAAGGT
Found at i:82683441 original size:54 final size:54
Alignment explanation
Indices: 82683341--82683446 Score: 126
Period size: 54 Copynumber: 1.9 Consensus size: 54
82683331 GACCTGAGGC
* *
82683341 TCAACTCACCTTTCGCAATATGAGCTGATTTGGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTGGAAAAAGTA-AAATTGAAAAGGT
* * *
82683395 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGT-AAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TGGAA-AAAGTAAAATTGAAAA
82683447 CAGAAATTGA
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
54 32 0.73
55 8 0.18
56 4 0.09
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.27
Consensus pattern (54 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTGGAAAAAGTAAAATTGAAAAGGT
Found at i:82683581 original size:54 final size:54
Alignment explanation
Indices: 82683481--82683586 Score: 135
Period size: 54 Copynumber: 1.9 Consensus size: 54
82683471 GACCTGAGGC
*
82683481 TCAACTCACCTCTCACAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCACAATATGAGCTGATTTTGAAAAAGTA-AAATTGAAAAGGT
* * *
82683535 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGT-AAATTGAAAA
1 TCAACCCACCTCTCACAATATGAGCTGATT-TTGAA-AAAGTAAAATTGAAAA
82683587 CAGAAATTGA
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
54 32 0.71
55 9 0.20
56 4 0.09
ACGTcount: A:0.39, C:0.20, G:0.14, T:0.27
Consensus pattern (54 bp):
TCAACCCACCTCTCACAATATGAGCTGATTTTGAAAAAGTAAAATTGAAAAGGT
Found at i:82683670 original size:72 final size:71
Alignment explanation
Indices: 82683577--82683742 Score: 226
Period size: 72 Copynumber: 2.3 Consensus size: 71
82683567 TGAACAACGT
* * * *
82683577 AAATTGAAAACAGAAATTGAAAATACCTCAACGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTAAAAACAAAAATTGAAAATACCTCAACGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
82683642 GAGTTG
66 GAGTTG
* * *
82683648 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTTACCTCTAGCAATA
1 AAATTAAAA-ACAAAAATTGAAAATACCTCAACGTGACCCGAGGCTCAACTCACCTCTAGCAATA
82683713 TGAGTTG
65 TGAGTTG
**
82683720 ATTTTGAAAAACAAAAATT-AAAA
1 AAATT-AAAAACAAAAATTGAAAA
82683743 GGCTTAACTC
Statistics
Matches: 84, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
71 12 0.14
72 68 0.81
73 4 0.05
ACGTcount: A:0.42, C:0.20, G:0.14, T:0.23
Consensus pattern (71 bp):
AAATTAAAAACAAAAATTGAAAATACCTCAACGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
GAGTTG
Found at i:82683837 original size:122 final size:124
Alignment explanation
Indices: 82683617--82683863 Score: 383
Period size: 122 Copynumber: 2.0 Consensus size: 124
82683607 ACGTGACCTG
* *
82683617 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTAAAAATACCTCAGCG
*
82683682 TGCCCCGAGGCTCAACTTACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAA
66 TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTG-AAAACAAAAATTAAA
* * * *
82683742 AGGCTTAACTCACCTCTCGCAATATGAG-T-CAATTTAAA-ACATAAACTAAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTAAAAATACCTCAGCG
* *
82683804 TGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAA
66 TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAAAAATTAAA
82683863 A
1 A
82683864 ATACCTCAAC
Statistics
Matches: 113, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
121 16 0.14
122 62 0.55
123 7 0.06
124 1 0.01
125 27 0.24
ACGTcount: A:0.39, C:0.22, G:0.14, T:0.25
Consensus pattern (124 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTAAAAATACCTCAGCG
TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAAAAATTAAA
Found at i:82683885 original size:71 final size:70
Alignment explanation
Indices: 82683742--82683916 Score: 228
Period size: 71 Copynumber: 2.5 Consensus size: 70
82683732 AAAAATTAAA
* * * * * *
82683742 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTTAAAACATAAACTAAAAATACCTCAGCGTG
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAACTAAAAATACCTCAACGTG
82683806 CCCCG
66 CCCCG
*
82683811 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT-AAAACAAAAACTAAAAATACCTCAACGT
* **
82683876 GTCTTG
65 GCCCCG
82683882 AGGCTCAACTCA-TCTCTCGCAATATGAGTTGATTT
1 AGGCTCAACTCACT-TCTCGCAATATGAGTTGATTT
82683917 CCCTTGAAAA
Statistics
Matches: 93, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
69 26 0.28
70 6 0.06
71 61 0.66
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.28
Consensus pattern (70 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAACTAAAAATACCTCAACGTG
CCCCG
Found at i:82694675 original size:30 final size:29
Alignment explanation
Indices: 82694632--82694732 Score: 157
Period size: 30 Copynumber: 3.4 Consensus size: 29
82694622 TGTAGGTACA
82694632 AGTGGTGGTGGAGCAAGTGTGGCTAGTGG
1 AGTGGTGGTGGAGCAAGTGTGGCTAGTGG
*
82694661 AGTAGGTAGTGGAGCAAGTGTGGCTAGTGG
1 AGT-GGTGGTGGAGCAAGTGTGGCTAGTGG
*
82694691 AGGTTGTGGTGGAGCAAGTGTGGCTAGTGG
1 A-GTGGTGGTGGAGCAAGTGTGGCTAGTGG
82694721 AGTTGGTGGTGG
1 AG-TGGTGGTGG
82694733 CAAAGGCTAA
Statistics
Matches: 65, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
29 4 0.06
30 59 0.91
31 2 0.03
ACGTcount: A:0.18, C:0.06, G:0.50, T:0.26
Consensus pattern (29 bp):
AGTGGTGGTGGAGCAAGTGTGGCTAGTGG
Found at i:82695289 original size:21 final size:21
Alignment explanation
Indices: 82695260--82695299 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
82695250 ATCCTCGATC
82695260 AGCTCCACTGCAACTTCAATT
1 AGCTCCACTGCAACTTCAATT
* *
82695281 AGCTTCACTGTAACTTCAA
1 AGCTCCACTGCAACTTCAA
82695300 GGATATAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.30, C:0.30, G:0.10, T:0.30
Consensus pattern (21 bp):
AGCTCCACTGCAACTTCAATT
Found at i:82695755 original size:92 final size:90
Alignment explanation
Indices: 82695413--82695953 Score: 477
Period size: 90 Copynumber: 6.0 Consensus size: 90
82695403 ACTAGACATT
* * * * *
82695413 AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCC-AAGGCTCAACTCACTTCTCGCAATATGA
1 AAAAAAAGAAATTGAAAATACCTCA--ACGTGTGCCTGAGGCTCAACTCACCTCTCGCAATATGA
82695477 GTTGA--TTTTT-A-AAACA-AAATTTG
64 GTTGATTTTTTTGACAAACATAAA-TTG
* * ** **** * * *
82695500 TAAAACAGATTTTGAAAATACCTCGGTATGTAACCCGAGGCTCAACTCACCTCTCGTAATATGAG
1 AAAAAAAGAAATTGAAAATACCTCAACGTGT-GCCTGAGGCTCAACTCACCTCTCGCAATATGAG
* *
82695565 TTGA--TTTTTG-CAAAGTATAAATTT
65 TTGATTTTTTTGACAAA-CATAAATTG
**
82695589 AAAAAAA-ATCAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATG
1 AAAAAAAGA--AATTGAAAATACCTCAACGTGTG-CCTGAGGCTCAACTCACCTCTCGCAATATG
82695653 AGTTGATTTTTTTGACAAACATAAATTG
63 AGTTGATTTTTTTGACAAACATAAATTG
* *
82695681 AAAAAAAAGAAATTGAAAATACCTCAACGTGT-CCTGATGCTGAACTCACCTCTCGCAATATGAG
1 -AAAAAAAGAAATTGAAAATACCTCAACGTGTGCCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
82695745 TTGATTTTTTTGGAAAAACA-AAATTTG
65 TTGATTTTTTT-GACAAACATAAA-TTG
* * * ** * *
82695772 AAAAACAGAATTTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCACCACTCGCAATATGAG
1 AAAAAAAGAAATTGAAAATACCTCAACGTGTGCCT-GAGGCTCAACTCACCTCTCGCAATATGAG
* *
82695837 CTGATTTTTTTGA-AACACAGAAATTG
65 TTGATTTTTTTGACAA-ACATAAATTG
* * * * * * *
82695863 AAGAACAGAAATAGAAAACACCTC-A-GCGT-CTTGAGGTTCAACTCACCTCTCGCAATATGAGT
1 AAAAAAAGAAATTGAAAATACCTCAACGTGTGCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
*
82695925 TGATTTTTTTGA-AAGACAGAAATTG
66 TGATTTTTTTGACAA-ACATAAATTG
82695950 AAAA
1 AAAA
82695954 TACCTCAACG
Statistics
Matches: 379, Mismatches: 55, Indels: 40
0.80 0.12 0.08
Matches are distributed among these distances:
85 2 0.01
86 2 0.01
87 108 0.28
88 5 0.01
89 11 0.03
90 129 0.34
91 39 0.10
92 71 0.19
93 11 0.03
94 1 0.00
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.28
Consensus pattern (90 bp):
AAAAAAAGAAATTGAAAATACCTCAACGTGTGCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTTTGACAAACATAAATTG
Found at i:82695789 original size:13 final size:14
Alignment explanation
Indices: 82695757--82695789 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
82695747 GATTTTTTTG
82695757 GAAAAACAAAATTT
1 GAAAAACAAAATTT
*
82695771 GAAAAACAGAATTT
1 GAAAAACAAAATTT
82695785 GAAAA
1 GAAAA
82695790 TACCTCAGCG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.64, C:0.06, G:0.12, T:0.18
Consensus pattern (14 bp):
GAAAAACAAAATTT
Found at i:82695815 original size:182 final size:176
Alignment explanation
Indices: 82695413--82697185 Score: 749
Period size: 146 Copynumber: 10.5 Consensus size: 176
82695403 ACTAGACATT
* ** *
82695413 AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACTTCTCGCAATATGAG
1 AAAAACAG-AATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
* ** * *
82695478 TTGA--TTTTT-AAAACAAAATTTGTAAAACAGATTTTGAAAATACCTCGGTATGTAACCCGAGG
65 TTGATTTTTTTGAAAACAAAA-TTGAAAAACAGAAATTGAAAATACCTCAG--TGT--CCTGAGG
* * * * *
82695540 CTCAACTCACCTCTCGTAATATGAGTTGA--TTTTTGCAAAGTA-TAAATTTA
125 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGGAAA-AACAAAATTTG
* * * *
82695590 AAAAAAATCAATTGAAAATACCTCGGCGTGTGA-CCTGAGGCTCAACTCACCTCTCGCAATATGA
1 AAAAACA-GAATTGAAAATACCTCAGCGTGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATGA
* *
82695654 GTTGATTTTTTTGACAAACATAAATTGAAAAAAAAGAAATTGAAAATACCTCAACGTGTCCTGAT
64 GTTGATTTTTTTGA-AAACA-AAATTG-AAAAACAGAAATTGAAAATACCTC-A-GTGTCCTGAG
*
82695719 GCTGAACTCACCTCTCGCAATATGAGTTGATTTTTTTGGAAAAACAAAATTTG
124 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGGAAAAACAAAATTTG
* *
82695772 AAAAACAGAATTTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCACCACTCGCAATATGAG
1 AAAAACAGAA-TTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
* * * * * * *
82695837 CTGATTTTTTTGAAACACAGAAATTGAAGAACAGAAATAGAAAACACCTCAGCGTCTTGAGGTTC
65 TTGATTTTTTTGAAA-ACA-AAATTGAAAAACAGAAATTGAAAATACCTCAGTGTCCTGAGGCTC
*
82695902 AACTCACCTCTCGCAATATGAGTTGATTTTTTT-GAAAGAC---A---G
128 AACTCACCTCTCGCAATATGAGTTGATTTTTTTGGAAAAACAAAATTTG
* ** *
82695944 ------A-AATTGAAAATACCTCAACGTGT---CTTGAGGCTCAACTCACTTCTCGCAATATGAG
1 AAAAACAGAATTGAAAATACCTCAGCGTGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGAG
* * * *
82695999 TTGA--TTTTTG---AC---------AAACAAAAATTGAAATTACCTCAGTGTCTTGAGGTTCAA
65 TTGATTTTTTTGAAAACAAAATTGAAAAACAGAAATTGAAAATACCTCAGTGTCCTGAGGCTCAA
* *
82696050 CTCACCTCTCGCAATATGAGCTGATTTTTTT-GAAAGAC---A---G
130 CTCACCTCTCGCAATATGAGTTGATTTTTTTGGAAAAACAAAATTTG
* ** *
82696090 ------A-AATTGAAAATACCTCAACGTGT---CTTGAGGCGCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAATTGAAAATACCTCAGCGTGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGAG
* *
82696145 TT-A-ATTTTTG---AC---------AAACAAAAATT-AAAATTACCTCAGCGTGTCCTGAGGCT
65 TTGATTTTTTTGAAAACAAAATTGAAAAACAGAAATTGAAAA-TACCTCA--GTGTCCTGAGGCT
*
82696195 CAACTCACCTATCGCAATATGAGTTGATTTTTTT-GAAAAACAGAAA-TTG
127 CAACTCACCTCTCGCAATATGAGTTGATTTTTTTGGAAAAACA-AAATTTG
* * * * * *
82696244 -AAAATAGAAATGGAAAACACCTCAGCGTCT-TG---AGGTTCAACTCACCTCTCGCAATATGAG
1 AAAAACAG-AATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
* * * **
82696304 CTGATTTTTTTGAAACACATAAATTAAAAAAAATTAAAAACAGAATTTGAAAGGACCTCAACGTG
65 TTGATTTTTTTGAAA-ACA-AAA-T--------TGAAAAACAGAAATTGAAAATACCTC-A-GTG
* * * *
82696369 TGGCCCGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTCTTTT-GAAAAGC---A---G
117 T--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGGAAAAACAAAATTTG
* * *
82696424 ------A-AATTGAAAATACCTCAGCATGT--CCCGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAAACAGAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGT
* * *
82696480 TGATTTTTTTG--------A-T-AAAAATAGAATTTGAAAATATCTCAGCGTGTCCTGAGGCTCA
66 TGATTTTTTTGAAAACAAAATTGAAAAACAGAAATTGAAAATACCTCA--GTGTCCTGAGGCTCA
82696535 ACTCACCTCTCGCAATATGAGTTGA--TTTTT-G----AC---A----
129 ACTCACCTCTCGCAATATGAGTTGATTTTTTTGGAAAAACAAAATTTG
* * * * * *
82696569 AACAA-A-AATTGAAATTACCTCAGCGTCT-TG---AGGTTCAACTCACCTCTCGCAATATGAGC
1 AAAAACAGAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGT
*
82696628 TGATTTTTTTG------AAA--G----ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCA
66 TGATTTTTTTGAAAACAAAATTGAAAAACAGAAATTGAAAATACCTC-A-GTGTCCTGAGGCTCA
* * **
82696681 ACTCACTTCTCGCAATATGAGTTGATTTTTTTTG--AAACATAAATTAA
129 ACTCACCTCTCGCAATATGAGTTGATTTTTTTGGAAAAACA-AAATTTG
* * * *
82696728 AAAAACAAAAATTGAGAATACCTCAGCATGT---CCTGAGGCTCAACTCACCTCTCGCAATATGA
1 AAAAAC-AGAATTGAAAATACCTCAGCGTGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATGA
**
82696790 GTTGATTTGAAAAGTAGAATTTGTAAGGCAAAAATTGAAAAACAGAAATTGAAAATACCTCAGCG
64 GTTGATTT------T----TTTG-AAAAC-AAAATTGAAAAACAGAAATTGAAAATACCTCA--G
* ** *
82696855 TATCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGCA
115 TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT------TTG-GA--AAAA-CA
82696920 GAAA-TTG
170 -AAATTTG
* * ** * *
82696927 AAAAACAGAAATTAAAAATACCTC-G-GCGTGCCCCGAGGCTCAGCTCACCTCTCGCAATATGAG
1 AAAAACAG-AATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
* *
82696990 TTGA--TTTTTG-----AAAA--G-----CATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTC
65 TTGATTTTTTTGAAAACAAAATTGAAAAACAGAAATTGAAAATACCTCA--GTGTCCTGAGGCTC
* *
82697041 AACTCACCTCTCGCAATATGGGTTGATTTTTTT-GAAAAGCATAAA-TTG
128 AACTCACCTCTCGCAATATGAGTTGATTTTTTTGGAAAAACA-AAATTTG
* * *
82697089 AAAAAAAAGGAAATTGAAAATACCTCAGCGTGTGA-CCTGAGGCCCAACTCACCTCTCGCAATAT
1 -AAAAACA-G-AATTGAAAATACCTCAGCGTGTGAGCC-AAGGCTCAACTCACCTCTCGCAATAT
82697153 GAGTTGA-TTTTTTGAAAGACAGAAA-T-AAAAACA
62 GAGTTGATTTTTTTGAAA-ACA-AAATTGAAAAACA
82697186 TCAAAATACC
Statistics
Matches: 1295, Mismatches: 142, Indels: 316
0.74 0.08 0.18
Matches are distributed among these distances:
145 4 0.00
146 211 0.16
147 1 0.00
148 92 0.07
149 1 0.00
150 26 0.02
151 2 0.00
152 35 0.03
153 1 0.00
154 26 0.02
155 2 0.00
156 2 0.00
159 32 0.02
160 7 0.01
161 25 0.02
162 55 0.04
163 9 0.01
164 68 0.05
165 9 0.01
166 36 0.03
167 6 0.00
170 1 0.00
172 1 0.00
173 82 0.06
174 7 0.01
175 40 0.03
176 2 0.00
177 57 0.04
178 7 0.01
179 49 0.04
180 39 0.03
181 33 0.03
182 120 0.09
183 1 0.00
184 21 0.02
185 4 0.00
186 45 0.03
187 5 0.00
188 63 0.05
191 1 0.00
197 3 0.00
198 2 0.00
199 55 0.04
200 7 0.01
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.28
Consensus pattern (176 bp):
AAAAACAGAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTTTGAAAACAAAATTGAAAAACAGAAATTGAAAATACCTCAGTGTCCTGAGGCTCAAC
TCACCTCTCGCAATATGAGTTGATTTTTTTGGAAAAACAAAATTTG
Found at i:82695990 original size:75 final size:74
Alignment explanation
Indices: 82695860--82696730 Score: 597
Period size: 73 Copynumber: 11.3 Consensus size: 74
82695850 AACACAGAAA
* * * *
82695860 TTGAAGAACAGAAATAGAAAACACCTC-A-GCGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAA-AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
82695923 GTTGATTTTT
65 GTTGATTTTT
*
82695933 TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACTTCTCGCAATATGA
1 TTGAAA-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
82695998 GTTGA--TTT
65 GTTGATTTTT
* * *
82696006 TTGACAAACAAAAATTGAAATTACCTC-A-GTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGA-AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
82696069 GCTGATTTTT
65 GTTGATTTTT
*
82696079 TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCGCAACTCACCTCTCGCAATATGA
1 TTGAAA-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
82696144 GTT-A-ATTT
65 GTTGATTTTT
* * * *
82696152 TTGACAAACAAAAATT-AAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCAATATG
1 TTGA-AAACAGAAATTGAAAA-TACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
82696216 AGTTGATTTTT
64 AGTTGATTTTT
** * * *
82696227 TTGAAAAACAGAAATTGAAAATAGAAATGGAAAACACCTCAGCGTCTTGAGGTTCAACTCACCTC
1 TTG-AAAACAGAAATTGAAAAT--ACCT------CA--AC-GTGTCTTGAGGCTCAACTCACCTC
*
82696292 TCGCAATATGAGCTGATTTTT
54 TCGCAATATGAGTTGATTTTT
* * * ** * **
82696313 TTGAAACACATAAATTAAAAAAAATTAAAAACAGAAT-TTGAAAGGACCTCAACGTGTGGC-CCG
1 TTGAAA-ACAGAAATTGAAAATACCT--CAAC-GTGTCTTG--AGG--CTCAAC---T--CACC-
*** * **** ***
82696376 AGGCTCAACTCACCTCTTGCAATATGAG
52 TCTCGCAA-T-ATGAGTTG--AT-TTTT
** * * * **
82696404 TTG-ATTCTTTTGAAAAGCAGAAATTGAAAATACCTCAGCATGTCCCGAGGCTCAACTCACCTCT
1 TTGAAAAC---AGAAA--------TTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
82696468 CGCAATATGAGTTGATTTTT
55 CGCAATATGAGTTGATTTTT
* * * * *
82696488 TTGATAAAAATAGAATTTGAAAATATCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATAT
1 TTG---AAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATAT
82696553 GAGTTGA--TTT
63 GAGTTGATTTTT
* * * *
82696563 TTGACAAACAAAAATTGAAATTACCTC-A-GCGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGA-AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
82696626 GCTGATTTTT
65 GTTGATTTTT
*
82696636 TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACTTCTCGCAATATGA
1 TTGAAA-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
82696701 GTTGATTTTTT
65 GTTGA-TTTTT
* *
82696712 TTG-AAACATAAATTAAAAA
1 TTGAAAACAGAAATTGAAAA
82696731 AACAAAAATT
Statistics
Matches: 628, Mismatches: 104, Indels: 131
0.73 0.12 0.15
Matches are distributed among these distances:
71 73 0.12
72 11 0.02
73 173 0.28
74 21 0.03
75 133 0.21
76 13 0.02
77 58 0.09
78 4 0.01
79 3 0.00
80 3 0.00
81 5 0.01
83 2 0.00
84 8 0.01
85 11 0.02
86 60 0.10
87 5 0.01
88 5 0.01
89 6 0.01
90 5 0.01
91 5 0.01
92 3 0.00
94 6 0.01
96 3 0.00
97 1 0.00
98 3 0.00
100 8 0.01
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (74 bp):
TTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTT
Found at i:82696285 original size:86 final size:87
Alignment explanation
Indices: 82696174--82696333 Score: 241
Period size: 86 Copynumber: 1.8 Consensus size: 87
82696164 AATTAAAATT
*
82696174 ACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCAATATGAGTTGATTTTTTTGAAAAACAGA
1 ACCTCAGCG-GTCCTGAGGCTCAACTCACCTATCGCAATATGAGCTGATTTTTTTGAAAAACAGA
*
82696239 AATTGAAAATAGAAATGGAAAAC
65 AATTAAAAATAGAAATGGAAAAC
* * * * *
82696262 ACCTCAGC-GTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAACACATAA
1 ACCTCAGCGGTCCTGAGGCTCAACTCACCTATCGCAATATGAGCTGATTTTTTTGAAAAACAGAA
82696326 ATTAAAAA
66 ATTAAAAA
82696334 AAATTAAAAA
Statistics
Matches: 65, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
86 57 0.88
88 8 0.12
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.28
Consensus pattern (87 bp):
ACCTCAGCGGTCCTGAGGCTCAACTCACCTATCGCAATATGAGCTGATTTTTTTGAAAAACAGAA
ATTAAAAATAGAAATGGAAAAC
Found at i:82696554 original size:77 final size:77
Alignment explanation
Indices: 82696338--82696712 Score: 455
Period size: 75 Copynumber: 5.0 Consensus size: 77
82696328 TAAAAAAAAT
* ** * * *
82696338 TAAAAACAGAATTTGAAAGGACCTCAACGTGTGGCCCGAGGCTCAACTCACCTCTTGCAATATGA
1 TAAAAACAGAAATTGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGA
*
82696403 GTTGATTCTTTTG-
64 GTTGATTTTTTTGA
* * *
82696416 -AAAAGCAGAAATTGAAAATACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
1 TAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
82696480 TGATTTTTTTGA
66 TGATTTTTTTGA
* * *
82696492 TAAAAATAGAATTTGAAAATATCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 TAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
82696557 TGA--TTTTTG-
66 TGATTTTTTTGA
* * * * * *
82696566 -ACAAACAAAAATTGAAATTACCTCAGC--GTCTTGAGGTTCAACTCACCTCTCGCAATATGAGC
1 TAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
82696628 TGATTTTTTTG-
66 TGATTTTTTTGA
* * * *
82696639 -AAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACTTCTCGCAATATGAGT
1 TAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
82696703 TGATTTTTTT
66 TGATTTTTTT
82696713 TGAAACATAA
Statistics
Matches: 260, Mismatches: 31, Indels: 15
0.85 0.10 0.05
Matches are distributed among these distances:
71 35 0.13
73 49 0.19
75 90 0.35
77 86 0.33
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.30
Consensus pattern (77 bp):
TAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTTTGA
Found at i:82696935 original size:14 final size:13
Alignment explanation
Indices: 82696900--82696944 Score: 72
Period size: 13 Copynumber: 3.4 Consensus size: 13
82696890 TTGATTTTTG
82696900 AAAAACAGAAATT
1 AAAAACAGAAATT
*
82696913 AAAAGCAGAAATT
1 AAAAACAGAAATT
82696926 GAAAAACAGAAATT
1 -AAAAACAGAAATT
82696940 AAAAA
1 AAAAA
82696945 TACCTCGGCG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
13 17 0.59
14 12 0.41
ACGTcount: A:0.69, C:0.07, G:0.11, T:0.13
Consensus pattern (13 bp):
AAAAACAGAAATT
Found at i:82696974 original size:100 final size:101
Alignment explanation
Indices: 82696728--82697016 Score: 413
Period size: 100 Copynumber: 2.9 Consensus size: 101
82696718 CATAAATTAA
* * *
82696728 AAAAACAAAAATTGAGAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * * *
82696793 GA--TTTGAAAAGTAGAATTTGTAAGGCAAAAATTG
66 GATTTTTGAAAAGCAGAAATTGAAAAGCAAAAATTG
*
82696827 AAAAACAGAAATTGAAAATACCTCAGCGTATCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* *
82696892 GATTTTTGAAAAACAGAAATT-AAAAGCAGAAATTG
66 GATTTTTGAAAAGCAGAAATTGAAAAGCAAAAATTG
* * * * *
82696927 AAAAACAGAAATTAAAAATACCTCGGCGTGCCCCGAGGCTCAGCTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
82696992 GATTTTTGAAAAGCATAAATTGAAA
66 GATTTTTGAAAAGCAGAAATTGAAA
82697017 TTACCTCAGC
Statistics
Matches: 169, Mismatches: 18, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
99 63 0.37
100 89 0.53
101 17 0.10
ACGTcount: A:0.40, C:0.19, G:0.17, T:0.24
Consensus pattern (101 bp):
AAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTGAAAAGCAGAAATTGAAAAGCAAAAATTG
Found at i:82697022 original size:73 final size:74
Alignment explanation
Indices: 82696924--82697092 Score: 241
Period size: 73 Copynumber: 2.3 Consensus size: 74
82696914 AAAGCAGAAA
* * * * *
82696924 TTGAAAAACAGAAATTAAAAATACCTCGGCGTGCCCCGAGGCTCAGCTCACCTCTCGCAATATGA
1 TTGAAAAGCATAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGA
82696989 GTTGA-TTT
66 GTTGATTTT
* * * *
82696997 TTGAAAAGCATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGG
1 TTGAAAAGCATAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGA
82697062 GTTGATTTTT
66 GTTGA-TTTT
82697072 TTGAAAAGCATAAATTGAAAA
1 TTGAAAAGCATAAATTGAAAA
82697093 AAAAGGAAAT
Statistics
Matches: 84, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
73 61 0.73
75 23 0.27
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28
Consensus pattern (74 bp):
TTGAAAAGCATAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTT
Found at i:82698058 original size:16 final size:16
Alignment explanation
Indices: 82698037--82698069 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
82698027 GATCCCTCTC
82698037 TCTTTTTT-TTTTCTTT
1 TCTTTTTTCTTTT-TTT
82698053 TCTTTTTTCTTTTTTT
1 TCTTTTTTCTTTTTTT
82698069 T
1 T
82698070 AAGGTGCCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (16 bp):
TCTTTTTTCTTTTTTT
Found at i:82698060 original size:12 final size:11
Alignment explanation
Indices: 82698037--82698069 Score: 57
Period size: 12 Copynumber: 2.9 Consensus size: 11
82698027 GATCCCTCTC
82698037 TCTTTTTTTTT
1 TCTTTTTTTTT
82698048 TCTTTTCTTTTT
1 TCTTTT-TTTTT
82698060 TCTTTTTTTT
1 TCTTTTTTTT
82698070 AAGGTGCCCT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 10 0.48
12 11 0.52
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (11 bp):
TCTTTTTTTTT
Found at i:82704438 original size:10 final size:10
Alignment explanation
Indices: 82704423--82704450 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
82704413 ACTAGCAATA
82704423 GTAATAATTT
1 GTAATAATTT
82704433 GTAATAATTT
1 GTAATAATTT
82704443 GTAATAAT
1 GTAATAAT
82704451 AATATATACA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.43, C:0.00, G:0.11, T:0.46
Consensus pattern (10 bp):
GTAATAATTT
Found at i:82705912 original size:29 final size:29
Alignment explanation
Indices: 82705879--82705937 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
82705869 CTAAGTATAC
82705879 ACAACCTAATGAATGGATGCTTTTAAGCT
1 ACAACCTAATGAATGGATGCTTTTAAGCT
82705908 ACAACCTAATGAATGGATGCTTTTAAGCT
1 ACAACCTAATGAATGGATGCTTTTAAGCT
82705937 A
1 A
82705938 ACTCAAAGTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.31
Consensus pattern (29 bp):
ACAACCTAATGAATGGATGCTTTTAAGCT
Found at i:82712747 original size:26 final size:26
Alignment explanation
Indices: 82712718--82712825 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
82712708 TGATACAAAT
82712718 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
82712744 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
82712770 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
82712796 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
82712822 TGAT
1 TGAT
82712826 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:82716349 original size:64 final size:63
Alignment explanation
Indices: 82716272--82716452 Score: 168
Period size: 67 Copynumber: 2.8 Consensus size: 63
82716262 CATTATAATG
* *** **
82716272 TAGCTAGGTCGCATGGTTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATATATT
1 TAGCTAGGTCGCATGGTTGGTACTATGTGTACACCATGTAGACAAGAGAGCTAAAAGATA-AAC
* * *
82716336 TAGCTAGGTCGCAT-GTGTGGTTCTAGGTGAAGGACACCATGTAGACAAGAGAGCTAAAAGATAA
1 TAGCTAGGTCGCATGGT-TGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTAAAAGATAA
82716400 AC
62 AC
* * * * *
82716402 TGGCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 TAGCTAGGTCGCATGGTTGGTACTATGTGTACACCATGTAG-ACAAGAGAGC
82716453 CGAACTATAT
Statistics
Matches: 94, Mismatches: 17, Indels: 13
0.76 0.14 0.10
Matches are distributed among these distances:
62 1 0.01
63 21 0.22
64 21 0.22
66 22 0.23
67 29 0.31
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (63 bp):
TAGCTAGGTCGCATGGTTGGTACTATGTGTACACCATGTAGACAAGAGAGCTAAAAGATAAAC
Done.