Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 241 of 295
Found at i:83047621 original size:29 final size:28
Alignment explanation
Indices: 83047588--83047644 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 28
83047578 TACAGGGGTT
83047588 TTTACACGGCC-TAGCACAAGCCCGTGTCC
1 TTTACACGGCCAT-G-ACAAGCCCGTGTCC
* *
83047617 TTTACACTGCCATGACACGCCCGTGTCC
1 TTTACACGGCCATGACAAGCCCGTGTCC
83047645 GTGTGCAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 13 0.52
29 11 0.44
30 1 0.04
ACGTcount: A:0.19, C:0.39, G:0.19, T:0.23
Consensus pattern (28 bp):
TTTACACGGCCATGACAAGCCCGTGTCC
Found at i:83048712 original size:46 final size:44
Alignment explanation
Indices: 83048605--83048725 Score: 109
Period size: 46 Copynumber: 2.7 Consensus size: 44
83048595 AGTAAGGTGA
* *
83048605 CGATGCCATGTCCCAGACATGGTTTTACACTGACACATTTCATGGC
1 CGATG-CATATCCTAGACAT-GTTTTACACTGACACATTTCATGGC
* * * *
83048651 CGATGCATGTTCTAGACATGTTTTACACTGGCTTACATCTTGA-GGC
1 CGATGCATATCCTAGACATGTTTTACACTGAC--ACAT-TTCATGGC
* **
83048697 TGATGCATATCCTAGACATGCCTTACACT
1 CGATGCATATCCTAGACATGTTTTACACT
83048726 AGCGCTCGTC
Statistics
Matches: 63, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
44 12 0.19
45 12 0.19
46 36 0.57
47 3 0.05
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.31
Consensus pattern (44 bp):
CGATGCATATCCTAGACATGTTTTACACTGACACATTTCATGGC
Found at i:83048771 original size:48 final size:47
Alignment explanation
Indices: 83048698--83048822 Score: 116
Period size: 47 Copynumber: 2.7 Consensus size: 47
83048688 TCTTGAGGCT
* * * * *
83048698 GATGCATATCCTAGACATGCCTTACACTAGCGCTCGTC-TCAA-T-GCC
1 GATGCATGTCCCAAACATGTCTTACACTAGCACTC-TCAT-AAGTGGCC
83048744 GATGCCATGTCCCAAACATGGTCTTACACT-G-ACTCTCATAATGTGGCC
1 GATG-CATGTCCCAAACAT-GTCTTACACTAGCACTCTCATAA-GTGGCC
*
83048792 GATGCATGTCCCAGACATGTCTTACACTAGC
1 GATGCATGTCCCAAACATGTCTTACACTAGC
83048823 TCACACAAGT
Statistics
Matches: 65, Mismatches: 6, Indels: 14
0.76 0.07 0.16
Matches are distributed among these distances:
45 4 0.06
46 18 0.28
47 27 0.42
48 16 0.25
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.26
Consensus pattern (47 bp):
GATGCATGTCCCAAACATGTCTTACACTAGCACTCTCATAAGTGGCC
Found at i:83073112 original size:93 final size:93
Alignment explanation
Indices: 83072953--83073122 Score: 268
Period size: 93 Copynumber: 1.8 Consensus size: 93
83072943 ATGGTTGAGC
* * * **
83072953 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATGTTCGAACTCGTTGAGTTG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAGTTG
*
83073018 AGTCTGAGTTCGTGAAATGTAACTAGGA
66 AGTCCGAGTTCGTGAAATGTAACTAGGA
* *
83073046 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAGCTCGTTGAGTTG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAGTTG
83073111 AGTCCGAGTTCG
66 AGTCCGAGTTCG
83073123 CTTATGGGCG
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (93 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAGTTG
AGTCCGAGTTCGTGAAATGTAACTAGGA
Found at i:83073127 original size:46 final size:45
Alignment explanation
Indices: 83072954--83073129 Score: 176
Period size: 46 Copynumber: 3.8 Consensus size: 45
83072944 TGGTTGAGCA
* *
83072954 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAA-G
* * * * * *
83073000 TTCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGAAATGTAACTAGGAA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATG-GA-TACGAAG
*
83073047 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAA-G
* * *
83073093 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
83073130 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
44 5 0.05
45 2 0.02
46 65 0.61
47 29 0.27
48 2 0.02
49 4 0.04
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.31
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAAG
Found at i:83081476 original size:40 final size:40
Alignment explanation
Indices: 83081421--83081618 Score: 292
Period size: 40 Copynumber: 5.0 Consensus size: 40
83081411 CGGATGGTAA
*
83081421 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA-T
* *
83081461 CCGGGCTATGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA-T
* *
83081501 CCGGGCTAAGTCCCGAAAGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
*
83081541 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
* *
83081581 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAACTAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAT
83081619 GTTCGGCTAA
Statistics
Matches: 149, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
40 148 0.99
41 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
Found at i:83087954 original size:22 final size:23
Alignment explanation
Indices: 83087929--83087975 Score: 87
Period size: 22 Copynumber: 2.1 Consensus size: 23
83087919 TTTAAGATTC
83087929 AATGATTAAGCAC-CATTAGTCA
1 AATGATTAAGCACTCATTAGTCA
83087951 AATGATTAAGCACTCATTAGTCA
1 AATGATTAAGCACTCATTAGTCA
83087974 AA
1 AA
83087976 CATGAAAAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 13 0.54
23 11 0.46
ACGTcount: A:0.43, C:0.17, G:0.13, T:0.28
Consensus pattern (23 bp):
AATGATTAAGCACTCATTAGTCA
Found at i:83089226 original size:6 final size:6
Alignment explanation
Indices: 83089200--83089264 Score: 103
Period size: 6 Copynumber: 10.5 Consensus size: 6
83089190 ATAAGTCTTC
*
83089200 AAAAAT AAATAAG AGAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
1 AAAAAT AAA-AAT A-AAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
83089250 AAAAAT AAAAAT AAA
1 AAAAAT AAAAAT AAA
83089265 GGGACTCAAA
Statistics
Matches: 55, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
6 47 0.85
7 6 0.11
8 2 0.04
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (6 bp):
AAAAAT
Found at i:83090868 original size:4 final size:4
Alignment explanation
Indices: 83090848--83090894 Score: 51
Period size: 4 Copynumber: 11.8 Consensus size: 4
83090838 GAAAATTAAG
* * *
83090848 AAAT AAA- AAAG AAAT AAAT AAAT AAAA AAAT AAAT AACT GAAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT -AAAT AAA
83090895 ATGAAATTGT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
3 3 0.08
4 30 0.83
5 3 0.08
ACGTcount: A:0.77, C:0.02, G:0.04, T:0.17
Consensus pattern (4 bp):
AAAT
Found at i:83090877 original size:20 final size:21
Alignment explanation
Indices: 83090847--83090895 Score: 66
Period size: 20 Copynumber: 2.4 Consensus size: 21
83090837 AGAAAATTAA
83090847 GAAAT-AAAAAAGAAATAAAT
1 GAAATAAAAAAAGAAATAAAT
* *
83090867 -AAATAAAAAAATAAATAACT
1 GAAATAAAAAAAGAAATAAAT
83090887 GAAATAAAA
1 GAAATAAAA
83090896 TGAAATTGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 4 0.16
20 13 0.52
21 8 0.32
ACGTcount: A:0.76, C:0.02, G:0.06, T:0.16
Consensus pattern (21 bp):
GAAATAAAAAAAGAAATAAAT
Found at i:83091311 original size:42 final size:42
Alignment explanation
Indices: 83091233--83091365 Score: 133
Period size: 42 Copynumber: 3.2 Consensus size: 42
83091223 AGGGGCACGG
* * * * * *
83091233 CCGTATGAGGCCTGTGTTGGGCCACCCG-GCTATGCCACATAC
1 CCGTGTGAGGCCCGTGTTGGGCCACACGATC-GTGCCACACAC
* * *
83091275 TCGTGTGAGGCCCGTGTTGGGCCACACTATCGTGCCACACGC
1 CCGTGTGAGGCCCGTGTTGGGCCACACGATCGTGCCACACAC
** * *
83091317 CCGTGTGAGGCCTTTGTTGGGCCACACGGTCGTGCCACACGC
1 CCGTGTGAGGCCCGTGTTGGGCCACACGATCGTGCCACACAC
83091359 CCGTGTG
1 CCGTGTG
83091366 GCTCGCGTCT
Statistics
Matches: 76, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
42 75 0.99
43 1 0.01
ACGTcount: A:0.14, C:0.33, G:0.32, T:0.22
Consensus pattern (42 bp):
CCGTGTGAGGCCCGTGTTGGGCCACACGATCGTGCCACACAC
Found at i:83099145 original size:18 final size:18
Alignment explanation
Indices: 83099124--83099191 Score: 88
Period size: 18 Copynumber: 3.9 Consensus size: 18
83099114 GAAAAAGTCT
*
83099124 AGAAAAATACAAATAAAC
1 AGAAAAATAAAAATAAAC
*
83099142 AGAAAAATAAAAATAAAA
1 AGAAAAATAAAAATAAAC
*
83099160 ATAAAAATAAAAATAAAC
1 AGAAAAATAAAAATAAAC
83099178 -G-AAAAT-AAAATAAA
1 AGAAAAATAAAAATAAA
83099192 TGGACTCAAT
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
15 8 0.18
16 5 0.11
18 32 0.71
ACGTcount: A:0.78, C:0.04, G:0.04, T:0.13
Consensus pattern (18 bp):
AGAAAAATAAAAATAAAC
Found at i:83099191 original size:5 final size:6
Alignment explanation
Indices: 83099126--83099176 Score: 75
Period size: 6 Copynumber: 8.5 Consensus size: 6
83099116 AAAAGTCTAG
* * *
83099126 AAAAAT ACAAAT AAACAG AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
83099174 AAA
1 AAA
83099177 CGAAAATAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 39 1.00
ACGTcount: A:0.80, C:0.04, G:0.02, T:0.14
Consensus pattern (6 bp):
AAAAAT
Found at i:83104272 original size:24 final size:24
Alignment explanation
Indices: 83104243--83104298 Score: 103
Period size: 24 Copynumber: 2.3 Consensus size: 24
83104233 ATAAACTATC
*
83104243 TCATTTTGGGTATAAAAGAAACTT
1 TCATTTTGGGTATAAAAGAAACTG
83104267 TCATTTTGGGTATAAAAGAAACTG
1 TCATTTTGGGTATAAAAGAAACTG
83104291 TCATTTTG
1 TCATTTTG
83104299 ATATAATGGC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.34, C:0.09, G:0.18, T:0.39
Consensus pattern (24 bp):
TCATTTTGGGTATAAAAGAAACTG
Found at i:83104439 original size:49 final size:49
Alignment explanation
Indices: 83104386--83104486 Score: 202
Period size: 49 Copynumber: 2.1 Consensus size: 49
83104376 AGTGATAGCT
83104386 TGTATTAATGCATTTTTAGATGTACCCTATATGGCCTAACATGTTGATG
1 TGTATTAATGCATTTTTAGATGTACCCTATATGGCCTAACATGTTGATG
83104435 TGTATTAATGCATTTTTAGATGTACCCTATATGGCCTAACATGTTGATG
1 TGTATTAATGCATTTTTAGATGTACCCTATATGGCCTAACATGTTGATG
83104484 TGT
1 TGT
83104487 GGATGAAAGT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 52 1.00
ACGTcount: A:0.26, C:0.14, G:0.19, T:0.42
Consensus pattern (49 bp):
TGTATTAATGCATTTTTAGATGTACCCTATATGGCCTAACATGTTGATG
Found at i:83105581 original size:28 final size:28
Alignment explanation
Indices: 83105536--83105649 Score: 117
Period size: 28 Copynumber: 4.2 Consensus size: 28
83105526 AGCATGGCTG
*
83105536 CCAGA-ACAGAT-ATTGTGATAGAGTCA
1 CCAGATACAGATAATTGTGATAGAGCCA
*
83105562 CCAGATACAGATAATTGTGACAGAGCCA
1 CCAGATACAGATAATTGTGATAGAGCCA
* * * *
83105590 CCAGAAATAGATATTTGTGGTAGAGCCA
1 CCAGATACAGATAATTGTGATAGAGCCA
* * **
83105618 CCAGAT-CAGATATTTATGGCAGAGCCA
1 CCAGATACAGATAATTGTGATAGAGCCA
83105645 CCAGA
1 CCAGA
83105650 ACGCTTCCTC
Statistics
Matches: 75, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
26 5 0.07
27 29 0.39
28 41 0.55
ACGTcount: A:0.37, C:0.19, G:0.23, T:0.21
Consensus pattern (28 bp):
CCAGATACAGATAATTGTGATAGAGCCA
Found at i:83105641 original size:55 final size:55
Alignment explanation
Indices: 83105543--83105650 Score: 155
Period size: 55 Copynumber: 2.0 Consensus size: 55
83105533 CTGCCAGAAC
* *
83105543 AGATATTGTGATAGAGTCACCAGATACAGATAATTGTGACAGAGCCACCAGAAAT
1 AGATATTGTGATAGAGCCACCAGATACAGATAATTATGACAGAGCCACCAGAAAT
* * *
83105598 AGATATTTGTGGTAGAGCCACCAGAT-CAGATATTTATGGCAGAGCCACCAGAA
1 AGATA-TTGTGATAGAGCCACCAGATACAGATAATTATGACAGAGCCACCAGAA
83105651 CGCTTCCTCC
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
55 29 0.62
56 18 0.38
ACGTcount: A:0.37, C:0.18, G:0.23, T:0.22
Consensus pattern (55 bp):
AGATATTGTGATAGAGCCACCAGATACAGATAATTATGACAGAGCCACCAGAAAT
Found at i:83109743 original size:20 final size:20
Alignment explanation
Indices: 83109718--83109756 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
83109708 AATAGGGGTC
*
83109718 ACACACCCGTGTGGTTAGGG
1 ACACACCCGTGTGGGTAGGG
*
83109738 ACACACCTGTGTGGGTAGG
1 ACACACCCGTGTGGGTAGG
83109757 CCGTGTGGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.21, C:0.23, G:0.36, T:0.21
Consensus pattern (20 bp):
ACACACCCGTGTGGGTAGGG
Found at i:83111027 original size:43 final size:42
Alignment explanation
Indices: 83110967--83111075 Score: 148
Period size: 43 Copynumber: 2.6 Consensus size: 42
83110957 CATACCAACA
* *
83110967 CCATATCCCATATATGGTCTTACATAGA-ATCTCATATCAATG
1 CCATAGCCCAGATATGGTCTTACAT-GACATCTCATATCAATG
* *
83111009 CCAATAGCCTAGTTATGGTCTTACATGACATCTCATATCAATG
1 CC-ATAGCCCAGATATGGTCTTACATGACATCTCATATCAATG
*
83111052 CCATATCCCAGATATGGTCTTACA
1 CCATAGCCCAGATATGGTCTTACA
83111076 AGTAACCTTT
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
42 23 0.40
43 35 0.60
ACGTcount: A:0.31, C:0.25, G:0.12, T:0.32
Consensus pattern (42 bp):
CCATAGCCCAGATATGGTCTTACATGACATCTCATATCAATG
Found at i:83114686 original size:22 final size:22
Alignment explanation
Indices: 83114658--83114700 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
83114648 TGTGTATGTG
*
83114658 CAAACCTCTTCTATGCATTGTA
1 CAAACCTCATCTATGCATTGTA
83114680 CAAACCTCATCTATGCATTGT
1 CAAACCTCATCTATGCATTGT
83114701 GCGAACTCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.28, C:0.28, G:0.09, T:0.35
Consensus pattern (22 bp):
CAAACCTCATCTATGCATTGTA
Found at i:83120620 original size:27 final size:27
Alignment explanation
Indices: 83120590--83120643 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
83120580 TATGAATGTG
83120590 AATGCTTGAGTAATTAAATGTTCCATT
1 AATGCTTGAGTAATTAAATGTTCCATT
83120617 AATGCTTGAGTAATTAAATGTTCCATT
1 AATGCTTGAGTAATTAAATGTTCCATT
83120644 TTGTATGCCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.33, C:0.11, G:0.15, T:0.41
Consensus pattern (27 bp):
AATGCTTGAGTAATTAAATGTTCCATT
Found at i:83125237 original size:46 final size:46
Alignment explanation
Indices: 83125187--83125359 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
83125177 TGGTTGAGCA
83125187 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
83125233 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
83125278 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
83125326 CCCGAGCTTGTTGAGTTGAGTCCGAGTTCGCTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
83125360 AGGGCGGGTT
Statistics
Matches: 106, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 58 0.55
47 29 0.27
48 2 0.02
50 5 0.05
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:83125343 original size:93 final size:93
Alignment explanation
Indices: 83125184--83125355 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
83125174 GGATGGTTGA
* *
83125184 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGCCCGAACTCGTTGAGT
83125249 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
83125277 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGCCCGAGCTTGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGCCCGAACTCGTTGAGT
83125342 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
83125356 CTTAAGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:83136088 original size:5 final size:5
Alignment explanation
Indices: 83136078--83136102 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
83136068 TAATGCTTAC
83136078 TCCTT TCCTT TCCTT TCCTT TCCTT
1 TCCTT TCCTT TCCTT TCCTT TCCTT
83136103 ATAGTGTCGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.00, C:0.40, G:0.00, T:0.60
Consensus pattern (5 bp):
TCCTT
Found at i:83139803 original size:64 final size:64
Alignment explanation
Indices: 83139698--83139904 Score: 195
Period size: 67 Copynumber: 3.1 Consensus size: 64
83139688 CATCATGTGT
* *
83139698 ACAAGAAAGCTACGAGACATTATAATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATG
1 ACAAGAGAGCTACGAG--A-TA-AATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATG
83139763 TAG
62 TAG
* * * * * * *
83139766 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGAGATAAATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGT
83139831 AG
63 AG
* * * *
83139833 ACAAGAGAGCTACGAGATAAACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCTTGT-G
1 ACAAGAGAGCTACGAGATAAA-TGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG
83139895 TACAAGAGAG
1 -ACAAGAGAG
83139905 TCGAACTATA
Statistics
Matches: 114, Mismatches: 20, Indels: 15
0.77 0.13 0.10
Matches are distributed among these distances:
62 1 0.01
63 17 0.15
64 25 0.22
65 2 0.02
66 22 0.19
67 31 0.27
68 16 0.14
ACGTcount: A:0.31, C:0.17, G:0.29, T:0.23
Consensus pattern (64 bp):
ACAAGAGAGCTACGAGATAAATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG
Found at i:83140282 original size:28 final size:29
Alignment explanation
Indices: 83140195--83140332 Score: 112
Period size: 28 Copynumber: 5.0 Consensus size: 29
83140185 TCGACCAAAC
83140195 GAATGACACTTAGTGTGC-AAGACATCCGA
1 GAATGACACTTAGTGTGCGAA-ACATCCGA
** ** *
83140224 -AATGACAC--AGTGTATGAAGTAT-TGA
1 GAATGACACTTAGTGTGCGAAACATCCGA
83140249 TG-ATGACACTTAGTGTGCGAAACATCCGA
1 -GAATGACACTTAGTGTGCGAAACATCCGA
**
83140278 -AATGACACTTAGTGTGCGAAGTAT-CGA
1 GAATGACACTTAGTGTGCGAAACATCCGA
* * *
83140305 GGATGGCATTTAGTGTGCGAAACATCCG
1 GAATGACACTTAGTGTGCGAAACATCCG
83140333 GTATAGCACT
Statistics
Matches: 83, Mismatches: 17, Indels: 18
0.70 0.14 0.15
Matches are distributed among these distances:
25 2 0.02
26 14 0.17
27 5 0.06
28 58 0.70
29 4 0.05
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.25
Consensus pattern (29 bp):
GAATGACACTTAGTGTGCGAAACATCCGA
Found at i:83140345 original size:28 final size:27
Alignment explanation
Indices: 83140255--83140345 Score: 85
Period size: 28 Copynumber: 3.3 Consensus size: 27
83140245 TTGATGATGA
*
83140255 CACTTAGTGTGCGAAACATCCGAAATG
1 CACTTAGTGTGCGAAACATCCGGAATG
** *
83140282 ACACTTAGTGTGCGAAGTAT-CGAGGATGG
1 -CACTTAGTGTGCGAAACATCCG-GAAT-G
* *
83140311 CATTTAGTGTGCGAAACATCCGGTATAG
1 CACTTAGTGTGCGAAACATCCGGAAT-G
83140339 CACTTAG
1 CACTTAG
83140346 CGTGTAAGAC
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
27 2 0.04
28 45 0.90
29 3 0.06
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (27 bp):
CACTTAGTGTGCGAAACATCCGGAATG
Found at i:83140345 original size:56 final size:56
Alignment explanation
Indices: 83140197--83140332 Score: 188
Period size: 56 Copynumber: 2.5 Consensus size: 56
83140187 GACCAAACGA
** * *
83140197 ATGACACTTAGTGTGC-AAGACATCCGAAATGACAC--AGTGTATGAAGTATTGATG
1 ATGACACTTAGTGTGCGAA-ACATCCGAAATGACACTTAGTGTGCGAAGTATCGAGG
83140251 ATGACACTTAGTGTGCGAAACATCCGAAATGACACTTAGTGTGCGAAGTATCGAGG
1 ATGACACTTAGTGTGCGAAACATCCGAAATGACACTTAGTGTGCGAAGTATCGAGG
* *
83140307 ATGGCATTTAGTGTGCGAAACATCCG
1 ATGACACTTAGTGTGCGAAACATCCG
83140333 GTATAGCACT
Statistics
Matches: 73, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
54 32 0.44
55 2 0.03
56 39 0.53
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (56 bp):
ATGACACTTAGTGTGCGAAACATCCGAAATGACACTTAGTGTGCGAAGTATCGAGG
Found at i:83149783 original size:27 final size:27
Alignment explanation
Indices: 83149772--83149947 Score: 237
Period size: 27 Copynumber: 6.5 Consensus size: 27
83149762 AGAATTATCA
* * *
83149772 TTTTACCCTCGATTTATAGAATTAACG
1 TTTTACCCTCGATTTACAAAATTACCG
*
83149799 TTTCACCCTCGATTTACAAAATTACCG
1 TTTTACCCTCGATTTACAAAATTACCG
* * * *
83149826 TTTTACCCTCAATTTATAGAATTACCA
1 TTTTACCCTCGATTTACAAAATTACCG
* *
83149853 TTTTACCCTCAATTTACAAAATTATCG
1 TTTTACCCTCGATTTACAAAATTACCG
*
83149880 TTTTACCCTCGATTTACAAAATTACCA
1 TTTTACCCTCGATTTACAAAATTACCG
83149907 TTTTACCCTC-AGTTTACAAAATTACCG
1 TTTTACCCTCGA-TTTACAAAATTACCG
83149934 TTTTACCCTCGATT
1 TTTTACCCTCGATT
83149948 GTGAAATTAC
Statistics
Matches: 130, Mismatches: 17, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
26 1 0.01
27 128 0.98
28 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.06, T:0.39
Consensus pattern (27 bp):
TTTTACCCTCGATTTACAAAATTACCG
Found at i:83149835 original size:54 final size:53
Alignment explanation
Indices: 83149772--83149947 Score: 262
Period size: 54 Copynumber: 3.3 Consensus size: 53
83149762 AGAATTATCA
* * *
83149772 TTTTACCCTCGATTTATAGAATTAACGTTTCACCCTCGATTTACAAAATTACCG
1 TTTTACCCTCGATTTATAGAATTACCATTTTACCCTC-ATTTACAAAATTACCG
* *
83149826 TTTTACCCTCAATTTATAGAATTACCATTTTACCCTCAATTTACAAAATTATCG
1 TTTTACCCTCGATTTATAGAATTACCATTTTACCCTC-ATTTACAAAATTACCG
* *
83149880 TTTTACCCTCGATTTACAAAATTACCATTTTACCCTCAGTTTACAAAATTACCG
1 TTTTACCCTCGATTTATAGAATTACCATTTTACCCTCA-TTTACAAAATTACCG
83149934 TTTTACCCTCGATT
1 TTTTACCCTCGATT
83149948 GTGAAATTAC
Statistics
Matches: 111, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
53 1 0.01
54 110 0.99
ACGTcount: A:0.30, C:0.24, G:0.06, T:0.39
Consensus pattern (53 bp):
TTTTACCCTCGATTTATAGAATTACCATTTTACCCTCATTTACAAAATTACCG
Found at i:83149868 original size:81 final size:81
Alignment explanation
Indices: 83149756--83149943 Score: 268
Period size: 81 Copynumber: 2.3 Consensus size: 81
83149746 AATGCCTTCG
* * * * *
83149756 ATTTGTAGAATTATCATTTTACCCTCGATTTATAGAATTAACGTTTCACCCTCGATTTACAAAAT
1 ATTTATAGAATTACCATTTTACCCTCAATTTACAAAATTAACGTTTCACCCTCGATTTACAAAAT
*
83149821 TACCGTTTTACCCTCA
66 TACCATTTTACCCTCA
* *
83149837 ATTTATAGAATTACCATTTTACCCTCAATTTACAAAATTATCGTTTTACCCTCGATTTACAAAAT
1 ATTTATAGAATTACCATTTTACCCTCAATTTACAAAATTAACGTTTCACCCTCGATTTACAAAAT
83149902 TACCATTTTACCCTCA
66 TACCATTTTACCCTCA
* * * *
83149918 GTTTACAAAATTACCGTTTTACCCTC
1 ATTTATAGAATTACCATTTTACCCTC
83149944 GATTGTGAAA
Statistics
Matches: 95, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
81 95 1.00
ACGTcount: A:0.31, C:0.23, G:0.06, T:0.39
Consensus pattern (81 bp):
ATTTATAGAATTACCATTTTACCCTCAATTTACAAAATTAACGTTTCACCCTCGATTTACAAAAT
TACCATTTTACCCTCA
Found at i:83150009 original size:27 final size:27
Alignment explanation
Indices: 83149979--83150102 Score: 169
Period size: 27 Copynumber: 4.6 Consensus size: 27
83149969 TGTAGGATAG
*
83149979 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAATTTGTAA
83150006 AATTACCAAAATACCCCTAATTTGTAA
1 AATTACCAAAATACCCCTAATTTGTAA
* * * *
83150033 AATTACCGAAATACCACTAGTTTGTGA
1 AATTACCAAAATACCCCTAATTTGTAA
**
83150060 AATTACCAAAATACCCCTAATTTACAA
1 AATTACCAAAATACCCCTAATTTGTAA
83150087 AATTA-CAGAAATACCC
1 AATTACCA-AAATACCC
83150103 TTGACTTTCT
Statistics
Matches: 85, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
26 2 0.02
27 83 0.98
ACGTcount: A:0.44, C:0.23, G:0.06, T:0.27
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAATTTGTAA
Found at i:83150018 original size:54 final size:54
Alignment explanation
Indices: 83149946--83150080 Score: 164
Period size: 54 Copynumber: 2.5 Consensus size: 54
83149936 TTACCCTCGA
** * * * *
83149946 TTGTGAAATTACTGAAATACCTCT-GTAGGATAGAATTACCAAAATACCCCTAGT
1 TTGTGAAATTACCAAAATACCCCTAATAGG-TAAAATTACCAAAATACCACTAGT
* ** *
83150000 TTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTACCGAAATACCACTAGT
1 TTGTGAAATTACCAAAATACCCCTAATAGGTAAAATTACCAAAATACCACTAGT
83150054 TTGTGAAATTACCAAAATACCCCTAAT
1 TTGTGAAATTACCAAAATACCCCTAAT
83150081 TTACAAAATT
Statistics
Matches: 69, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
54 67 0.97
55 2 0.03
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.30
Consensus pattern (54 bp):
TTGTGAAATTACCAAAATACCCCTAATAGGTAAAATTACCAAAATACCACTAGT
Found at i:83150081 original size:54 final size:54
Alignment explanation
Indices: 83149979--83150185 Score: 195
Period size: 54 Copynumber: 3.8 Consensus size: 54
83149969 TGTAGGATAG
* * **
83149979 AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAATTTGTAA
1 AATTACCGAAATACCACTAGTTTGTAAAATTACCAAAATACCCCTAATTTACAA
*
83150033 AATTACCGAAATACCACTAGTTTGTGAAATTACCAAAATACCCCTAATTTACAA
1 AATTACCGAAATACCACTAGTTTGTAAAATTACCAAAATACCCCTAATTTACAA
* * * * ** **
83150087 AATTACAGAAATACC-CTTGACTTTCTAAAAATTA-TAGAAATACCATTGGTTTACAA
1 AATTACCGAAATACCAC-T-AGTTTGT-AAAATTACCA-AAATACCCCTAATTTACAA
* * * *
83150143 AATTACTGAAATACC-CTTAGTTTGTAGATTTACCAAAACACCC
1 AATTACCGAAATACCAC-TAGTTTGTAAAATTACCAAAATACCC
83150186 TTGTAGGATG
Statistics
Matches: 126, Mismatches: 22, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
53 1 0.01
54 75 0.60
55 12 0.10
56 38 0.30
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.30
Consensus pattern (54 bp):
AATTACCGAAATACCACTAGTTTGTAAAATTACCAAAATACCCCTAATTTACAA
Found at i:83150153 original size:27 final size:28
Alignment explanation
Indices: 83150080--83150157 Score: 81
Period size: 29 Copynumber: 2.8 Consensus size: 28
83150070 ATACCCCTAA
* *
83150080 TTTACAAAATTACAGAAATACCCTTGAC
1 TTTACAAAATTACTGAAATACCATTGAC
*
83150108 TTT-CTAAAAATTA-TAGAAATACCATTG-G
1 TTTAC--AAAATTACT-GAAATACCATTGAC
83150136 TTTACAAAATTACTGAAATACC
1 TTTACAAAATTACTGAAATACC
83150158 CTTAGTTTGT
Statistics
Matches: 42, Mismatches: 3, Indels: 11
0.75 0.05 0.20
Matches are distributed among these distances:
27 16 0.38
28 7 0.17
29 19 0.45
ACGTcount: A:0.44, C:0.17, G:0.08, T:0.32
Consensus pattern (28 bp):
TTTACAAAATTACTGAAATACCATTGAC
Found at i:83150165 original size:27 final size:27
Alignment explanation
Indices: 83149979--83150166 Score: 144
Period size: 27 Copynumber: 6.9 Consensus size: 27
83149969 TGTAGGATAG
* *
83149979 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCGAAATACCCCTAGTTTGCAA
* * *
83150006 AATTACCAAAATACCCCTAATTTGTAA
1 AATTACCGAAATACCCCTAGTTTGCAA
* **
83150033 AATTACCGAAATACCACTAGTTTGTGA
1 AATTACCGAAATACCCCTAGTTTGCAA
* * *
83150060 AATTACCAAAATACCCCTAATTTACAA
1 AATTACCGAAATACCCCTAGTTTGCAA
* * *
83150087 AATTACAGAAATACCCTTGACTTT-CTAAA
1 AATTACCGAAATACCCCT-AGTTTGC--AA
** ** * *
83150116 AATTATAGAAATACCATTGGTTTACAA
1 AATTACCGAAATACCCCTAGTTTGCAA
* *
83150143 AATTACTGAAATACCCTTAGTTTG
1 AATTACCGAAATACCCCTAGTTTG
83150167 TAGATTTACC
Statistics
Matches: 133, Mismatches: 24, Indels: 8
0.81 0.15 0.05
Matches are distributed among these distances:
27 107 0.80
28 7 0.05
29 19 0.14
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (27 bp):
AATTACCGAAATACCCCTAGTTTGCAA
Found at i:83150249 original size:27 final size:27
Alignment explanation
Indices: 83150206--83150279 Score: 71
Period size: 27 Copynumber: 2.7 Consensus size: 27
83150196 AGATGACTAA
*
83150206 AATACCCCTAATA-GGTAAAAAGACCGT
1 AATACCCCT-GTAGGGTAAAAAGACCGT
**
83150233 AA-AGCCCCTGTAGGGTAAACTGACCGT
1 AATA-CCCCTGTAGGGTAAAAAGACCGT
* *
83150260 AATACCCTTGTATGGTAAAA
1 AATACCCCTGTAGGGTAAAA
83150280 TGACGAATAT
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
26 3 0.08
27 34 0.89
28 1 0.03
ACGTcount: A:0.38, C:0.22, G:0.19, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAAAGACCGT
Found at i:83150283 original size:27 final size:27
Alignment explanation
Indices: 83150219--83150283 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
83150209 ACCCCTAATA
*
83150219 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* * *
83150246 GGTAAACTGACCGTAATA-CCCTTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
83150273 GGTAAAATGAC
1 GGTAAAATGAC
83150284 GAATATGCCC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:83151168 original size:24 final size:25
Alignment explanation
Indices: 83151092--83151161 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
83151082 AGGAAGTGCT
* * * * *
83151092 AAAATGGCTATGCTCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATCA
83151117 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
83151142 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
83151162 ATTAAAAGAG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:83151174 original size:24 final size:25
Alignment explanation
Indices: 83151097--83151174 Score: 81
Period size: 25 Copynumber: 3.2 Consensus size: 25
83151087 GTGCTAAAAT
* * *
83151097 GGCTATGCTCCAGTTTACCGAAAAG-
1 GGCTTTGCCCCAGTTTATC-AAAAGA
83151122 GGCTTTGCCCCAGTTTATCAAAA-A
1 GGCTTTGCCCCAGTTTATCAAAAGA
*
83151146 GGGCTTTGCCCCAG-TTATTAAAAGA
1 -GGCTTTGCCCCAGTTTATCAAAAGA
83151171 GGCT
1 GGCT
83151175 AGGCCTCCAA
Statistics
Matches: 46, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
24 16 0.35
25 30 0.65
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (25 bp):
GGCTTTGCCCCAGTTTATCAAAAGA
Found at i:83151428 original size:31 final size:31
Alignment explanation
Indices: 83151379--83151454 Score: 136
Period size: 31 Copynumber: 2.5 Consensus size: 31
83151369 CGCTTACAGT
83151379 AAAGGCTTCGG-CCAGTGATATGATTTATAA
1 AAAGGCTTCGGCCCAGTGATATGATTTATAA
*
83151409 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATAA
83151440 AAAGGCTTCGGCCCA
1 AAAGGCTTCGGCCCA
83151455 ATCAAAAAGG
Statistics
Matches: 44, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
30 11 0.25
31 33 0.75
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.26
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATAA
Found at i:83151491 original size:24 final size:24
Alignment explanation
Indices: 83151459--83151505 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
83151449 GGCCCAATCA
**
83151459 AAAAGGGCTTTGCC-CCAGTTATT
1 AAAAGGGCTAGGCCTCCAGTTATT
83151482 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAG-GGCTAGGCCTCCAGTTAT
83151506 ATGATAAAGC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 5 0.25
24 7 0.35
25 8 0.40
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTAGGCCTCCAGTTATT
Found at i:83151746 original size:31 final size:31
Alignment explanation
Indices: 83151697--83151779 Score: 134
Period size: 31 Copynumber: 2.7 Consensus size: 31
83151687 CGCTTACAGT
83151697 AAAGGCTTCGG-CCAGTGATATGATTTATAA
1 AAAGGCTTCGGCCCAGTGATATGATTTATAA
*
83151727 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATAA
*
83151758 AAAGGCTTCGGCCTAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
83151780 TCGAGACTGA
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
30 16 0.32
31 34 0.68
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATAA
Found at i:83155978 original size:13 final size:12
Alignment explanation
Indices: 83155954--83155987 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
83155944 TATTAATTTG
* *
83155954 TATTATTTAAAT
1 TATTTTTTAAAA
83155966 TATTTTTTAAAA
1 TATTTTTTAAAA
83155978 TATTTTTTAA
1 TATTTTTTAA
83155988 TTAGTGGCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (12 bp):
TATTTTTTAAAA
Found at i:83158364 original size:41 final size:41
Alignment explanation
Indices: 83158314--83158394 Score: 153
Period size: 41 Copynumber: 2.0 Consensus size: 41
83158304 TTTTTAAAAA
*
83158314 CTCCAATCCCATAATCATTAATGATAAAAGAGGGAAAAACT
1 CTCCAATCCCATAATCATTAAAGATAAAAGAGGGAAAAACT
83158355 CTCCAATCCCATAATCATTAAAGATAAAAGAGGGAAAAAC
1 CTCCAATCCCATAATCATTAAAGATAAAAGAGGGAAAAAC
83158395 AAAGTGAATG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.48, C:0.20, G:0.12, T:0.20
Consensus pattern (41 bp):
CTCCAATCCCATAATCATTAAAGATAAAAGAGGGAAAAACT
Found at i:83159829 original size:16 final size:17
Alignment explanation
Indices: 83159790--83159845 Score: 51
Period size: 16 Copynumber: 3.2 Consensus size: 17
83159780 AGCTTAATAT
83159790 TATTATATTATTAATAAA
1 TATT-TATTATTAATAAA
* *
83159808 TTTTTATTTTTAA-AAA
1 TATTTATTATTAATAAA
**
83159824 TATTTAAAATTAATAAAA
1 TATTTATTATTAAT-AAA
83159842 TATT
1 TATT
83159846 ATAATTTTCA
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
16 12 0.40
17 8 0.27
18 10 0.33
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (17 bp):
TATTTATTATTAATAAA
Found at i:83162344 original size:32 final size:32
Alignment explanation
Indices: 83162305--83162369 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
83162295 ATATTAAAAT
83162305 TAAAAATCTAAAAATTTAATATAATAATTTTA
1 TAAAAATCTAAAAATTTAATATAATAATTTTA
83162337 TAAAAATCTAAAAATTTAATATAATAATTTTA
1 TAAAAATCTAAAAATTTAATATAATAATTTTA
83162369 T
1 T
83162370 CTTTTTTTAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (32 bp):
TAAAAATCTAAAAATTTAATATAATAATTTTA
Found at i:83167300 original size:22 final size:22
Alignment explanation
Indices: 83167275--83167316 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
83167265 TGTATGTGCG
*
83167275 AACCTCTTCTATGCATTGTGTA
1 AACCTCATCTATGCATTGTGTA
*
83167297 AACCTCATCTATGCGTTGTG
1 AACCTCATCTATGCATTGTG
83167317 CGAACTCTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.21, C:0.24, G:0.17, T:0.38
Consensus pattern (22 bp):
AACCTCATCTATGCATTGTGTA
Found at i:83171904 original size:42 final size:43
Alignment explanation
Indices: 83171806--83171911 Score: 121
Period size: 42 Copynumber: 2.5 Consensus size: 43
83171796 TTAGGGTTAC
* *
83171806 TAAGAC-TACATGTAAGACCATATCTAGGATATGACATCAATA
1 TAAGACTTTCATGTAAGACCATATCTAGGATAAGACATCAATA
* * * *
83171848 TGAGACTTT-GTGTAAGACCATATCTAGGATACAGA-ATCGATG
1 TAAGACTTTCATGTAAGACCATATCTAGGATA-AGACATCAATA
83171890 TAAGA-TTTCATGTAAGACCATA
1 TAAGACTTTCATGTAAGACCATA
83171912 GCTGGGCTAT
Statistics
Matches: 53, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
41 3 0.06
42 47 0.89
43 3 0.06
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (43 bp):
TAAGACTTTCATGTAAGACCATATCTAGGATAAGACATCAATA
Found at i:83177528 original size:93 final size:93
Alignment explanation
Indices: 83177416--83177681 Score: 460
Period size: 93 Copynumber: 2.9 Consensus size: 93
83177406 CACCCATAAG
* * *
83177416 CGAACTTGGACTCAACTCAACGAGCTCAGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCA
1 CGAACTTGGACTCAACTCAACGAGTTCAGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
83177481 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
83177509 CGAACTTGGACTCAACTCAACGAGTTCAGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTTGGACTCAACTCAACGAGTTCAGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
83177574 ATGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
* * *
83177602 CGAACTCGAACTCAACTCAACTAGTTCAGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTTGGACTCAACTCAACGAGTTCAGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
83177667 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
83177682 CAAATATCCG
Statistics
Matches: 164, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 164 1.00
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.22
Consensus pattern (93 bp):
CGAACTTGGACTCAACTCAACGAGTTCAGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:83177530 original size:47 final size:47
Alignment explanation
Indices: 83177463--83177622 Score: 168
Period size: 47 Copynumber: 3.4 Consensus size: 47
83177453 ATCCATAAGT
*
83177463 GAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
* * * * * *
83177510 GAACTTGGACTCAACTCAACGAGTTC--A-GAC--GTTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT-C-TCA-C
*
83177556 GAACTCGGACTCAACTCAATGAGCTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
*
83177603 GAACTCGAACTCAACTCAAC
1 GAACTCGGACTCAACTCAAC
83177623 TAGTTCAGAC
Statistics
Matches: 88, Mismatches: 16, Indels: 18
0.72 0.13 0.15
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
44 3 0.03
45 3 0.03
46 23 0.26
47 41 0.47
48 3 0.03
49 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.31, C:0.30, G:0.17, T:0.22
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:83177674 original size:46 final size:46
Alignment explanation
Indices: 83177409--83177671 Score: 218
Period size: 46 Copynumber: 5.7 Consensus size: 46
83177399 TGTAACCCAC
* *
83177409 CCATAAGCGAACTTGGACTCAACTCAACGAGCTCAGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGACGTTCGCAT
* * * *
83177455 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTC--A-GAC--GTTCGCAT
* * *
83177505 -C-TCA-CGAACTTGGACTCAACTCAACGAGTTCAGACGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGACGTTCGCAT
* * * *
83177548 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTC--A-GAC--GTTCGCAT
* * * *
83177598 -C-TCA-CGAACTCGAACTCAACTCAACTAGTTCAGACGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGACGTTCGCAT
*
83177641 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGCGAACTCGGACTCAACTCAACGAG
83177672 TTCGGATGCC
Statistics
Matches: 168, Mismatches: 31, Indels: 36
0.71 0.13 0.15
Matches are distributed among these distances:
42 6 0.04
43 6 0.04
44 6 0.04
45 6 0.04
46 75 0.45
47 45 0.27
48 6 0.04
49 6 0.04
50 6 0.04
51 6 0.04
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGACGTTCGCAT
Found at i:83181051 original size:56 final size:56
Alignment explanation
Indices: 83180965--83181097 Score: 221
Period size: 56 Copynumber: 2.4 Consensus size: 56
83180955 ATGGCATTGA
* *
83180965 TATATGTGTGTGAGTAAGACTACGTTTAATACATTGGCATCGATATGTGATTCTGT
1 TATATGTGTGTGAGTAAGACCACATTTAATACATTGGCATCGATATGTGATTCTGT
* * *
83181021 TATATGTGTGCGAGTAAGACCACATTTAATACGTTGGCATCGATATGTGATTTTGT
1 TATATGTGTGTGAGTAAGACCACATTTAATACATTGGCATCGATATGTGATTCTGT
83181077 TATATGTGTGTGAGTAAGACC
1 TATATGTGTGTGAGTAAGACC
83181098 TTATCTGGGA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
56 71 1.00
ACGTcount: A:0.27, C:0.11, G:0.24, T:0.38
Consensus pattern (56 bp):
TATATGTGTGTGAGTAAGACCACATTTAATACATTGGCATCGATATGTGATTCTGT
Found at i:83181115 original size:56 final size:56
Alignment explanation
Indices: 83180965--83181128 Score: 184
Period size: 56 Copynumber: 2.9 Consensus size: 56
83180955 ATGGCATTGA
* * * * * *
83180965 TATATGTGTGTGAGTAAGACTACGTTTAATACATTGGCATCGATATGTGATTCTGT
1 TATATGTGTGCGAGTAAGACCACATCTAAGACAATGGCATCGATATGTGATTCTGT
* * ** *
83181021 TATATGTGTGCGAGTAAGACCACATTTAATACGTTGGCATCGATATGTGATTTTGT
1 TATATGTGTGCGAGTAAGACCACATCTAAGACAATGGCATCGATATGTGATTCTGT
* ** **
83181077 TATATGTGTGTGAGTAAGACCTTATCTGGGACAATGGCATCGATATGTGATT
1 TATATGTGTGCGAGTAAGACCACATCTAAGACAATGGCATCGATATGTGATT
83181129 ACATGTAAGA
Statistics
Matches: 94, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
56 94 1.00
ACGTcount: A:0.27, C:0.12, G:0.24, T:0.37
Consensus pattern (56 bp):
TATATGTGTGCGAGTAAGACCACATCTAAGACAATGGCATCGATATGTGATTCTGT
Found at i:83183895 original size:37 final size:37
Alignment explanation
Indices: 83183842--83183993 Score: 173
Period size: 37 Copynumber: 4.1 Consensus size: 37
83183832 TAATACTCGA
*
83183842 TTGAGC-TTACTT-AGTATATCAGTAAATAACACTCAG
1 TTGAGCTTTA-TTCAGTATATCAGTAGATAACACTCAG
* * * *
83183878 TTTAGCTTTATTCAGTATATTAGTAGATATCACTCGG
1 TTGAGCTTTATTCAGTATATCAGTAGATAACACTCAG
* * * *
83183915 TTGAGCTTTATTTAGTATATTAGTAGATATCGCTCAG
1 TTGAGCTTTATTCAGTATATCAGTAGATAACACTCAG
* * *
83183952 TTGAGCTTTAGTCGGTATATCAGTAGGTAACACTCAG
1 TTGAGCTTTATTCAGTATATCAGTAGATAACACTCAG
83183989 TTGAG
1 TTGAG
83183994 TAACACTCAG
Statistics
Matches: 98, Mismatches: 16, Indels: 3
0.84 0.14 0.03
Matches are distributed among these distances:
36 7 0.07
37 91 0.93
ACGTcount: A:0.29, C:0.14, G:0.19, T:0.38
Consensus pattern (37 bp):
TTGAGCTTTATTCAGTATATCAGTAGATAACACTCAG
Found at i:83183959 original size:74 final size:73
Alignment explanation
Indices: 83183830--83183993 Score: 193
Period size: 74 Copynumber: 2.2 Consensus size: 73
83183820 ACATTTAATG
* * * *
83183830 GATAATACTCGATTGAGCTTACTTAGTATATCAGTAAATAACACTCAGTTTAGCTTTATTCAGTA
1 GATAACACTCGGTTGAGCTTACTTAGTATATCAGTAAATAACACTCAGTTGAGCTTTAGTCAGTA
*
83183895 TATTAGTA
66 TATCAGTA
* * * * * * *
83183903 GATATCACTCGGTTGAGCTTTATTTAGTATATTAGTAGATATCGCTCAGTTGAGCTTTAGTCGGT
1 GATAACACTCGGTTGAGC-TTACTTAGTATATCAGTAAATAACACTCAGTTGAGCTTTAGTCAGT
83183968 ATATCAGTA
65 ATATCAGTA
* *
83183977 GGTAACACTCAGTTGAG
1 GATAACACTCGGTTGAG
83183994 TAACACTCAG
Statistics
Matches: 75, Mismatches: 15, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
73 15 0.20
74 60 0.80
ACGTcount: A:0.30, C:0.14, G:0.19, T:0.37
Consensus pattern (73 bp):
GATAACACTCGGTTGAGCTTACTTAGTATATCAGTAAATAACACTCAGTTGAGCTTTAGTCAGTA
TATCAGTA
Found at i:83184127 original size:17 final size:17
Alignment explanation
Indices: 83184105--83184140 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
83184095 CATTTTTGTT
83184105 CCTGTAACACCCCAAAC
1 CCTGTAACACCCCAAAC
*
83184122 CCTGTAACACCCCGAAC
1 CCTGTAACACCCCAAAC
83184139 CC
1 CC
83184141 GAAACCGACA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.31, C:0.50, G:0.08, T:0.11
Consensus pattern (17 bp):
CCTGTAACACCCCAAAC
Found at i:83185504 original size:27 final size:27
Alignment explanation
Indices: 83185474--83185651 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 27
83185464 ATATTGAGCC
* * *
83185474 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACACAATCAAAT
* **
83185501 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACACAATCAAAT
* * * *
83185528 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACACAATCA-AAT
** *** *
83185556 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACACAATCAAAT
* * **
83185583 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAAAT
* * * *
83185610 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTACACAATCAAAT
83185637 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
83185652 GTACAATTTA
Statistics
Matches: 123, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 23 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACACAATCAAAT
Found at i:83185567 original size:55 final size:55
Alignment explanation
Indices: 83185474--83185651 Score: 204
Period size: 54 Copynumber: 3.3 Consensus size: 55
83185464 ATATTGAGCC
* * *
83185474 CGCACACTCAGTGCTATACA-A-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAT-CATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
83185528 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * *
83185583 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
83185637 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
83185652 GTACAATTTA
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 56 0.54
55 45 0.43
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:83185613 original size:82 final size:81
Alignment explanation
Indices: 83185495--83185650 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
83185485 TGCTATACAA
* * *
83185495 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGCA
83185560 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
83185577 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCA
83185641 CACTTAGTGC
65 CACTTAGTGC
83185651 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:83193571 original size:27 final size:27
Alignment explanation
Indices: 83193541--83193718 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 27
83193531 ATATTGAGCC
* * *
83193541 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACACAATCAAAT
* **
83193568 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACACAATCAAAT
* * * *
83193595 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACACAATCA-AAT
** *** *
83193623 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACACAATCAAAT
* * **
83193650 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAAAT
* * * *
83193677 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTACACAATCAAAT
83193704 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
83193719 GTACAATTTA
Statistics
Matches: 123, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 23 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACACAATCAAAT
Found at i:83193634 original size:55 final size:55
Alignment explanation
Indices: 83193541--83193718 Score: 204
Period size: 54 Copynumber: 3.3 Consensus size: 55
83193531 ATATTGAGCC
* * *
83193541 CGCACACTCAGTGCTATACA-A-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAT-CATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
83193595 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * *
83193650 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
83193704 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
83193719 GTACAATTTA
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 56 0.54
55 45 0.43
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:83193680 original size:82 final size:81
Alignment explanation
Indices: 83193562--83193717 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
83193552 TGCTATACAA
* * *
83193562 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGCA
83193627 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
83193644 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCA
83193708 CACTTAGTGC
65 CACTTAGTGC
83193718 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:83196656 original size:29 final size:30
Alignment explanation
Indices: 83196590--83196708 Score: 124
Period size: 29 Copynumber: 4.2 Consensus size: 30
83196580 TACATACATG
* *
83196590 CATATGGCCCA-CTAGGCCCGA-TCTTATT
1 CATATGGCCCATCTAGGCCCAATTCATATT
* *
83196618 CAAATGGCCCATCT-GGCCCAGTTCATATT
1 CATATGGCCCATCTAGGCCCAATTCATATT
* *
83196647 CTTATGGCCCA-CTAGGCCCAATTCACATT
1 CATATGGCCCATCTAGGCCCAATTCATATT
* *
83196676 CATATGTCCCAT-TAGGCCCAAATCATATT
1 CATATGGCCCATCTAGGCCCAATTCATATT
83196705 -ATAT
1 CATAT
83196709 TCATGCTCAC
Statistics
Matches: 75, Mismatches: 12, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
28 21 0.28
29 54 0.72
ACGTcount: A:0.26, C:0.30, G:0.14, T:0.29
Consensus pattern (30 bp):
CATATGGCCCATCTAGGCCCAATTCATATT
Found at i:83196702 original size:58 final size:57
Alignment explanation
Indices: 83196592--83196704 Score: 138
Period size: 58 Copynumber: 2.0 Consensus size: 57
83196582 CATACATGCA
* ** **
83196592 TATGGCCCACTAGGCCCGATCTTATTCAAATGGCCCATCTGGCCCAGTTCATATTCT
1 TATGGCCCACTAGGCCCAATCACATTCAAATGGCCCATCTGGCCCAAATCATATTCT
* *
83196649 TATGGCCCACTAGGCCCAATTCACATTCATATGTCCCAT-TAGGCCCAAATCATATT
1 TATGGCCCACTAGGCCCAA-TCACATTCAAATGGCCCATCT-GGCCCAAATCATATT
83196705 ATATTCATGC
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
57 19 0.40
58 28 0.60
ACGTcount: A:0.25, C:0.31, G:0.15, T:0.29
Consensus pattern (57 bp):
TATGGCCCACTAGGCCCAATCACATTCAAATGGCCCATCTGGCCCAAATCATATTCT
Found at i:83196944 original size:16 final size:16
Alignment explanation
Indices: 83196923--83196977 Score: 83
Period size: 16 Copynumber: 3.4 Consensus size: 16
83196913 CCAAACTTTC
*
83196923 GGCTTTTCGACATTTT
1 GGCTTTTCGGCATTTT
*
83196939 GGCTTTTCGGCATTTC
1 GGCTTTTCGGCATTTT
*
83196955 GGCATTTCGGCATTTT
1 GGCTTTTCGGCATTTT
83196971 GGCTTTT
1 GGCTTTT
83196978 ATCGATTCAT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.09, C:0.20, G:0.24, T:0.47
Consensus pattern (16 bp):
GGCTTTTCGGCATTTT
Found at i:83196956 original size:8 final size:8
Alignment explanation
Indices: 83196919--83196969 Score: 66
Period size: 8 Copynumber: 6.4 Consensus size: 8
83196909 GTAGCCAAAC
*
83196919 TTTCGGCT
1 TTTCGGCA
*
83196927 TTTCGACA
1 TTTCGGCA
* *
83196935 TTTTGGCT
1 TTTCGGCA
83196943 TTTCGGCA
1 TTTCGGCA
83196951 TTTCGGCA
1 TTTCGGCA
83196959 TTTCGGCA
1 TTTCGGCA
83196967 TTT
1 TTT
83196970 TGGCTTTTAT
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
8 36 1.00
ACGTcount: A:0.10, C:0.22, G:0.22, T:0.47
Consensus pattern (8 bp):
TTTCGGCA
Found at i:83202478 original size:27 final size:27
Alignment explanation
Indices: 83202447--83202611 Score: 212
Period size: 27 Copynumber: 6.1 Consensus size: 27
83202437 GATGGCTACT
* *
83202447 AGATACAGATAATGTGACAGAGTCACC
1 AGATACAGATAATGTGGCAGAGCCACC
83202474 AGATACAGATAATTGTGGCAGAGCCACC
1 AGATACAGATAA-TGTGGCAGAGCCACC
83202502 AGA-ACAGATATATGTGGCAGAGCCACC
1 AGATACAGATA-ATGTGGCAGAGCCACC
*
83202529 AGAT-CAGATAATCGTGGCATAGCCACC
1 AGATACAGATAAT-GTGGCAGAGCCACC
*
83202556 AGA-ATAGATATATGTGGCAGAGCCACC
1 AGATACAGATA-ATGTGGCAGAGCCACC
*
83202583 AGAT-CAGATAATTGTGGCATAGCCACC
1 AGATACAGATAA-TGTGGCAGAGCCACC
83202610 AG
1 AG
83202612 GATGCTTCCT
Statistics
Matches: 123, Mismatches: 7, Indels: 16
0.84 0.05 0.11
Matches are distributed among these distances:
26 3 0.02
27 101 0.82
28 19 0.15
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.18
Consensus pattern (27 bp):
AGATACAGATAATGTGGCAGAGCCACC
Found at i:83202510 original size:54 final size:54
Alignment explanation
Indices: 83202451--83202611 Score: 261
Period size: 54 Copynumber: 3.0 Consensus size: 54
83202441 GCTACTAGAT
* * *
83202451 ACAGATA-ATGTGACAGAGTCACCAGATACAGATAATTGTGGCAGAGCCACCAGA
1 ACAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCACCAGA
*
83202505 ACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCATAGCCACCAGA
1 ACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGA
*
83202559 ATAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAG
1 ACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAG
83202612 GATGCTTCCT
Statistics
Matches: 100, Mismatches: 6, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
54 82 0.82
55 18 0.18
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (54 bp):
ACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGA
Found at i:83206338 original size:12 final size:12
Alignment explanation
Indices: 83206321--83206347 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
83206311 CTAGCACCTT
83206321 AGGGTATCTCGG
1 AGGGTATCTCGG
83206333 AGGGTATCTCGG
1 AGGGTATCTCGG
83206345 AGG
1 AGG
83206348 TCTACCTCGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.19, C:0.15, G:0.44, T:0.22
Consensus pattern (12 bp):
AGGGTATCTCGG
Found at i:83212237 original size:30 final size:30
Alignment explanation
Indices: 83212201--83212257 Score: 105
Period size: 30 Copynumber: 1.9 Consensus size: 30
83212191 GTTGTCATCA
*
83212201 CAAGTATTTTTACCATTAATTTAACCTTAT
1 CAAGTATTTTTACCATTAATTCAACCTTAT
83212231 CAAGTATTTTTACCATTAATTCAACCT
1 CAAGTATTTTTACCATTAATTCAACCT
83212258 CATACTTTGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.19, G:0.04, T:0.44
Consensus pattern (30 bp):
CAAGTATTTTTACCATTAATTCAACCTTAT
Found at i:83213138 original size:20 final size:21
Alignment explanation
Indices: 83213115--83213154 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
83213105 AGGAAAAATC
*
83213115 AAAA-TGATTTAGGATAGACT
1 AAAAGTGATTTAAGATAGACT
*
83213135 AAAAGTGGTTTAAGATAGAC
1 AAAAGTGATTTAAGATAGAC
83213155 AGAAATCATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.45, C:0.05, G:0.23, T:0.28
Consensus pattern (21 bp):
AAAAGTGATTTAAGATAGACT
Found at i:83217174 original size:22 final size:22
Alignment explanation
Indices: 83217138--83217198 Score: 81
Period size: 22 Copynumber: 2.9 Consensus size: 22
83217128 GATTCATGCT
83217138 AAGA-GTTCGCACAATGCATAG
1 AAGAGGTTCGCACAATGCATAG
* * *
83217159 ATGAGGTTTGCACAATGCATGG
1 AAGAGGTTCGCACAATGCATAG
83217181 AAGAGGTTCGCAC-ATGCA
1 AAGAGGTTCGCACAATGCA
83217199 CATGTTCAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
21 8 0.24
22 26 0.76
ACGTcount: A:0.33, C:0.18, G:0.28, T:0.21
Consensus pattern (22 bp):
AAGAGGTTCGCACAATGCATAG
Found at i:83220052 original size:19 final size:19
Alignment explanation
Indices: 83220025--83220061 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
83220015 TTATTATGCC
* *
83220025 AATTTTATAAATAAAAAAA
1 AATTATATAAACAAAAAAA
83220044 AATTATATAAACAAAAAA
1 AATTATATAAACAAAAAA
83220062 CAAAATAATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (19 bp):
AATTATATAAACAAAAAAA
Found at i:83220074 original size:20 final size:20
Alignment explanation
Indices: 83220037--83220074 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
83220027 TTTTATAAAT
*
83220037 AAAAAAAAATTATATAAACA
1 AAAAAAAAATAATATAAACA
83220057 AAAAACAAAATAAT-TAAA
1 AAAAA-AAAATAATATAAA
83220075 TATTATTTGG
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 9 0.56
21 7 0.44
ACGTcount: A:0.76, C:0.05, G:0.00, T:0.18
Consensus pattern (20 bp):
AAAAAAAAATAATATAAACA
Found at i:83239600 original size:44 final size:43
Alignment explanation
Indices: 83239542--83239641 Score: 164
Period size: 44 Copynumber: 2.3 Consensus size: 43
83239532 ATCGCATTTA
83239542 ATTTCGTGTAAGACCACGTCTGGGACGTTGGAATCGACTTGAG
1 ATTTCGTGTAAGACCACGTCTGGGACGTTGGAATCGACTTGAG
* *
83239585 ATTTACGTGTAAGACCACGTCTGGGACGTTGGCATCGATTTGAG
1 ATTT-CGTGTAAGACCACGTCTGGGACGTTGGAATCGACTTGAG
*
83239629 ATATCGTGTAAGA
1 ATTTCGTGTAAGA
83239642 TAGTGTCTGG
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
43 13 0.25
44 40 0.75
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (43 bp):
ATTTCGTGTAAGACCACGTCTGGGACGTTGGAATCGACTTGAG
Found at i:83239651 original size:43 final size:43
Alignment explanation
Indices: 83239485--83239751 Score: 215
Period size: 43 Copynumber: 6.2 Consensus size: 43
83239475 TACGTAATAC
* * * *
83239485 TGGCATAGATTAGAGATTACGTATAAGACCATGGT-TGGGACAT
1 TGGCATCGATTTGAGATTACGTGTAAGACTAT-GTCTGGGACAT
** * * * *
83239528 TGTAATCGCATTT-A-ATTTCGTGTAAGACCACGTCTGGGACGT
1 TGGCATCG-ATTTGAGATTACGTGTAAGACTATGTCTGGGACAT
* * * * *
83239570 TGGAATCGACTTGAGATTTACGTGTAAGACCACGTCTGGGACGT
1 TGGCATCGATTTGAGA-TTACGTGTAAGACTATGTCTGGGACAT
*
83239614 TGGCATCGATTTGAGA-TATCGTGTAAGA-TAGTGTCTGGGACAC
1 TGGCATCGATTTGAGATTA-CGTGTAAGACTA-TGTCTGGGACAT
* * *
83239657 TGGCATCGATTAGAGATTACATATAAGACTATGTCTGGGACAT
1 TGGCATCGATTTGAGATTACGTGTAAGACTATGTCTGGGACAT
* * * * *
83239700 TGGCATCG-TAT-ATGATTTCGTGTAAGACTCTGTCTAGGACAG
1 TGGCATCGATTTGA-GATTACGTGTAAGACTATGTCTGGGACAT
83239742 TGGCATCGAT
1 TGGCATCGAT
83239752 AATTCATTAC
Statistics
Matches: 184, Mismatches: 29, Indels: 22
0.78 0.12 0.09
Matches are distributed among these distances:
41 6 0.03
42 64 0.35
43 67 0.36
44 47 0.26
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (43 bp):
TGGCATCGATTTGAGATTACGTGTAAGACTATGTCTGGGACAT
Found at i:83239761 original size:85 final size:86
Alignment explanation
Indices: 83239594--83239795 Score: 212
Period size: 85 Copynumber: 2.4 Consensus size: 86
83239584 GATTTACGTG
* * * * *
83239594 TAAGACCACGTCTGGGACGTTGGCATCG-ATTTGAGATATCGTGTAAGATAGTGTCTGGGACACT
1 TAAGACCATGTCTGGGACATTGGCATCGTATAT-AGATATCGTGTAAGATACTGTCTAGGACACT
* * *
83239658 GGCATCGATTAGAGATTACATA
65 GGCATCGATAAGACATTACACA
* * *
83239680 TAAGACTATGTCTGGGACATTGGCATCGTATAT-GATTTCGTGTAAGACT-CTGTCTAGGACAGT
1 TAAGACCATGTCTGGGACATTGGCATCGTATATAGATATCGTGTAAGA-TACTGTCTAGGACACT
** *
83239743 GGCATCGATAATTCATTACACG
65 GGCATCGATAAGACATTACACA
* * *
83239765 TAAGACCATATCTGGGTCATTGGCATTGTAT
1 TAAGACCATGTCTGGGACATTGGCATCGTAT
83239796 GAGCTTTCAG
Statistics
Matches: 96, Mismatches: 18, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
85 67 0.70
86 26 0.27
87 3 0.03
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (86 bp):
TAAGACCATGTCTGGGACATTGGCATCGTATATAGATATCGTGTAAGATACTGTCTAGGACACTG
GCATCGATAAGACATTACACA
Found at i:83242131 original size:410 final size:410
Alignment explanation
Indices: 83241366--83242172 Score: 1175
Period size: 410 Copynumber: 2.0 Consensus size: 410
83241356 TGGCCATTTT
* *
83241366 GAAGGGTACACGGGCTAGATACACGGGTGTATGGTCGGGTCTATGACCCAAGTCAGTTTTGACCA
1 GAAGGGTACACGGGCTAGACACACGGGTGTATGGTCGGCTCTATGACCCAAGTCAGTTTTGACCA
*
83241431 CGATGAAGACACACGGGCGTGTCTTGTGGCCGTGTGGTTAAGTTAGTATGTATGATTATGCTCTG
66 CGATGAAGACACACGGGCGTGTCTTGTGGCCGTGTGGTTAAGTCAGTATGTATGATTATGCTCTG
** * *** * * * * *
83241496 TTTGGCCATGGCTCAGACACACGGGCGTGTCTAATGTTGTGTTAGGTACACGGCCTGTTCACGTG
131 TTTGGCCACAGCTCAGACACACGGGCATGTCTAATGCCATGTGAGGCACACGACCTATTCACGCG
* * *
83241561 GGCATGTGACCTCTGTAACTTTGAAAAATGTTTAAATTTTGAAAAATTCTGTCTGAGCTCGGTTT
196 GGCATGTGACCTCTGTAACTTCGAAAAATGTTTAAATTTCGAAAAATTCTGTATGAGCTCGGTTT
*
83241626 AGTCCAAACCCCTTTCTAAAGTATGATTAAGGTTTCGAAGACCTATATGAGGGACTTTATAATGA
261 AGTCCAAACCCCTTTCTAAAGTATGATTAAGGTTTCGAAGACCTATATAAGGGACTTTATAATGA
* * * *
83241691 TGTTTGACTATATTGTAGATAATATTATTAAATTGTTTGTAAAATATTCCGATTTGTCCGGTAAT
326 TGTTTGACTATATTGTAGATAATATTATTAAATTGTTCGTAAAATATTCCAATTTGTCCAGTAAC
83241756 GCCTTTATAATGTGTGGCTC
391 GCCTTTATAATGTGTGGCTC
* * * * * * *
83241776 GAAGGGTACACGGGGTAGACATACGGGTGTGTGGTCGGC-CTTGTGACCCAAGTTATTTTTGACT
1 GAAGGGTACACGGGCTAGACACACGGGTGTATGGTCGGCTC-TATGACCCAAGTCAGTTTTGACC
** * *
83241840 GTGTTGAAGACACACGGGCGTGTCTTGTGGCCGTGTGGTTAAGTCAGTATGTATGCTTATGCTCT
65 ACGATGAAGACACACGGGCGTGTCTTGTGGCCGTGTGGTTAAGTCAGTATGTATGATTATGCTCT
* * *
83241905 GTTTTGCCACAGCTCAGATACACGGGCATGTCTAATGCCATGTGAGGCATACGACCTATTCACGC
130 GTTTGGCCACAGCTCAGACACACGGGCATGTCTAATGCCATGTGAGGCACACGACCTATTCACGC
** * * *
83241970 GGGTGTGTGACCTCTGTAACTTCGGAAAATGTTTAAATTTCGAAAAATTTTGTATGAGCTTGGTT
195 GGGCATGTGACCTCTGTAACTTCGAAAAATGTTTAAATTTCGAAAAATTCTGTATGAGCTCGGTT
***
83242035 TAGTCCCGGCCCCTTTCTAAAGTATGATTAAGGTTTCGAAGACCTATATAAGGGACTTTATAATG
260 TAGTCCAAACCCCTTTCTAAAGTATGATTAAGGTTTCGAAGACCTATATAAGGGACTTTATAATG
* * *
83242100 ATGTTTGACTATATTGTATATAATGTTATTAAATTGTTCGTAAAATATTTCAATTTGTCCAGTAA
325 ATGTTTGACTATATTGTAGATAATATTATTAAATTGTTCGTAAAATATTCCAATTTGTCCAGTAA
83242165 CGCCTTTA
390 CGCCTTTA
83242173 ACCTTAGTCT
Statistics
Matches: 349, Mismatches: 47, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
409 1 0.00
410 348 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.34
Consensus pattern (410 bp):
GAAGGGTACACGGGCTAGACACACGGGTGTATGGTCGGCTCTATGACCCAAGTCAGTTTTGACCA
CGATGAAGACACACGGGCGTGTCTTGTGGCCGTGTGGTTAAGTCAGTATGTATGATTATGCTCTG
TTTGGCCACAGCTCAGACACACGGGCATGTCTAATGCCATGTGAGGCACACGACCTATTCACGCG
GGCATGTGACCTCTGTAACTTCGAAAAATGTTTAAATTTCGAAAAATTCTGTATGAGCTCGGTTT
AGTCCAAACCCCTTTCTAAAGTATGATTAAGGTTTCGAAGACCTATATAAGGGACTTTATAATGA
TGTTTGACTATATTGTAGATAATATTATTAAATTGTTCGTAAAATATTCCAATTTGTCCAGTAAC
GCCTTTATAATGTGTGGCTC
Found at i:83246686 original size:43 final size:43
Alignment explanation
Indices: 83246638--83246860 Score: 172
Period size: 43 Copynumber: 5.2 Consensus size: 43
83246628 TACAGAATAC
* * *
83246638 TGGCATCGATTAGAGATTACGTATAAGACCATGCCTGAGACAT
1 TGGCATCGATTAGAGATTACGTGTAAGACCATGTCTGGGACAT
** **
83246681 TGGCATCGTATTTA-ATTTTA--TGTAAGACCACATCTGGGA-AGT
1 TGGCATCG-A-TTAGAGATTACGTGTAAGACCATGTCTGGGACA-T
* * * **
83246723 TGGCATCGACTT-GAAATTTACGTGTAAGATCACGTCTGGGATGT
1 TGGCATCGA-TTAGAGA-TTACGTGTAAGACCATGTCTGGGACAT
* *
83246767 TGGCATCGATTTGAGA-TATCGTGTAAGA-CAGTGTCTGGGACAC
1 TGGCATCGATTAGAGATTA-CGTGTAAGACCA-TGTCTGGGACAT
* * *
83246810 TGGCATCGATTAGAGATTACGTATAAGACCATGTATAGGACAT
1 TGGCATCGATTAGAGATTACGTGTAAGACCATGTCTGGGACAT
*
83246853 TGACATCG
1 TGGCATCG
83246861 TATATGATTT
Statistics
Matches: 143, Mismatches: 24, Indels: 26
0.74 0.12 0.13
Matches are distributed among these distances:
41 5 0.03
42 30 0.21
43 66 0.46
44 39 0.27
45 3 0.02
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (43 bp):
TGGCATCGATTAGAGATTACGTGTAAGACCATGTCTGGGACAT
Found at i:83246726 original size:42 final size:42
Alignment explanation
Indices: 83246680--83246778 Score: 119
Period size: 44 Copynumber: 2.3 Consensus size: 42
83246670 GCCTGAGACA
*
83246680 TTGGCATCGTATTTAATTTTA-TGTAAGACCACATCTGGGAAG
1 TTGGCATCG-ATTTAAATTTACTGTAAGACCACATCTGGGAAG
* * * *
83246722 TTGGCATCGACTTGAAATTTACGTGTAAGATCACGTCTGGGATG
1 TTGGCATCGA-TTTAAATTTAC-TGTAAGACCACATCTGGGAAG
83246766 TTGGCATCGATTT
1 TTGGCATCGATTT
83246779 GAGATATCGT
Statistics
Matches: 48, Mismatches: 6, Indels: 5
0.81 0.10 0.08
Matches are distributed among these distances:
41 1 0.02
42 17 0.35
43 2 0.04
44 28 0.58
ACGTcount: A:0.25, C:0.15, G:0.24, T:0.35
Consensus pattern (42 bp):
TTGGCATCGATTTAAATTTACTGTAAGACCACATCTGGGAAG
Found at i:83246761 original size:44 final size:43
Alignment explanation
Indices: 83246701--83246795 Score: 127
Period size: 44 Copynumber: 2.2 Consensus size: 43
83246691 TTTAATTTTA
*
83246701 TGTAAGACCACATCTGGGAAGTTGGCATCGACTTGAAATTTACG
1 TGTAAGACCACATCTGGGAAGTTGGCATCGACTTGAAATAT-CG
* * * * *
83246745 TGTAAGATCACGTCTGGGATGTTGGCATCGATTTGAGATATCG
1 TGTAAGACCACATCTGGGAAGTTGGCATCGACTTGAAATATCG
83246788 TGTAAGAC
1 TGTAAGAC
83246796 AGTGTCTGGG
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
43 9 0.20
44 35 0.80
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (43 bp):
TGTAAGACCACATCTGGGAAGTTGGCATCGACTTGAAATATCG
Found at i:83253533 original size:29 final size:29
Alignment explanation
Indices: 83253499--83253559 Score: 113
Period size: 29 Copynumber: 2.1 Consensus size: 29
83253489 AGTGTGATTC
83253499 TGAATTTCGAGTTGATGTTGATGATTGTT
1 TGAATTTCGAGTTGATGTTGATGATTGTT
*
83253528 TGAATTTTGAGTTGATGTTGATGATTGTT
1 TGAATTTCGAGTTGATGTTGATGATTGTT
83253557 TGA
1 TGA
83253560 GATTCAGAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.21, C:0.02, G:0.28, T:0.49
Consensus pattern (29 bp):
TGAATTTCGAGTTGATGTTGATGATTGTT
Found at i:83263188 original size:48 final size:47
Alignment explanation
Indices: 83263085--83263296 Score: 189
Period size: 46 Copynumber: 4.5 Consensus size: 47
83263075 TATGTTTGCT
* * * *
83263085 AGTGTAAGACTTGTATAGGACATGCATCGGCCAC-A-TTATGAGAGCC
1 AGTGTAAGACATGTCTAGGACATGCATCGACCACGAGATAT-AGAGCC
* *
83263131 AGTGTAAGACATGTCTAGGACATGCATCGACCTCGAGATATACCAGCC
1 AGTGTAAGACATGTCTAGGACATGCATCGACCACGAGATATA-GAGCC
* * * ** *
83263179 AGTGTAAGACATGTCTGGGACATGCATC-AACATTGAGA-CGAGAGCT
1 AGTGTAAGACATGTCTAGGACATGCATCGACCA-CGAGATATAGAGCC
* * * * *
83263225 GGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGATATACAAGCT
1 AGTGTAAGACATGTCTAGGACATGCATCGACCACGAGATATA-GAGCC
* *
83263273 AGTGTAAAACCTGTCTAGGACATG
1 AGTGTAAGACATGTCTAGGACATG
83263297 GCGTCAGCTT
Statistics
Matches: 134, Mismatches: 25, Indels: 12
0.78 0.15 0.07
Matches are distributed among these distances:
46 64 0.48
47 8 0.06
48 62 0.46
ACGTcount: A:0.31, C:0.20, G:0.26, T:0.22
Consensus pattern (47 bp):
AGTGTAAGACATGTCTAGGACATGCATCGACCACGAGATATAGAGCC
Found at i:83263419 original size:49 final size:49
Alignment explanation
Indices: 83263314--83263443 Score: 138
Period size: 49 Copynumber: 2.7 Consensus size: 49
83263304 CTTGTTGTGT
* * *
83263314 GTCAGTGTAGGACTTGTCTGGGACATGGCATCGACACCATTAGATGAGA
1 GTCAGTGTAAGACTTGTCTGGGACATGGCATCGACACCAGTAGATGAAA
* * * *
83263363 G-CTAGTGTAAGACTTGTATGGGACATGGCATCGGC-CTCGGTATATGAAA
1 GTC-AGTGTAAGACTTGTCTGGGACATGGCATCGACAC-CAGTAGATGAAA
* * *
83263412 GTCAGTGTAAGACCTATCTGAGACATGGCATC
1 GTCAGTGTAAGACTTGTCTGGGACATGGCATC
83263444 AACTTTGATG
Statistics
Matches: 67, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
48 2 0.03
49 64 0.96
50 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.25
Consensus pattern (49 bp):
GTCAGTGTAAGACTTGTCTGGGACATGGCATCGACACCAGTAGATGAAA
Found at i:83263419 original size:142 final size:138
Alignment explanation
Indices: 83263178--83263486 Score: 331
Period size: 142 Copynumber: 2.2 Consensus size: 138
83263168 ATATACCAGC
* *
83263178 CAGTGTAAGACATGTCTGGGACATGCATCAACATTGAGACGAGAGCTGGTGTAAGACATGTCTGG
1 CAGTGTAAGACATGTCTGGGACATGCATCAACATTGAGACGAGAGCTAGTGTAAGACATGTATGG
*
83263243 GACATGCATCGGCCACGAGATATACAAGCTAGTGTAAAACCTGTCT-AGGACATGGCGTCAGCTT
66 GACATGCATCGGCCACGAGATATACAAGCTAGTGTAAAACCTATCTGA-GACATGGCGTCAGCTT
83263307 GTTGTGTGT
130 GTTGTGTGT
* * * *
83263316 CAGTGTAGGACTTGTCTGGGACATGGCATCGACACCATT-AGATGAGAGCTAGTGTAAGACTTGT
1 CAGTGTAAGACATGTCTGGGACAT-GCATC-A-A-CATTGAGACGAGAGCTAGTGTAAGACATGT
* * *
83263380 ATGGGACATGGCATCGGCCTCG-GTATATGA-AAG-TCAGTGTAAGACCTATCTGAGACATGGCA
62 ATGGGACAT-GCATCGGCCACGAG-ATAT-ACAAGCT-AGTGTAAAACCTATCTGAGACATGGCG
* * *
83263442 TCAACTTTGATGTGCTAGC
123 TCAGC-TTGTTGTG-T-GT
* *
83263461 CAGTGTAAGACCATGTTTAGGACATG
1 CAGTGTAAGA-CATGTCTGGGACATG
83263487 GCGTCGGCAT
Statistics
Matches: 141, Mismatches: 17, Indels: 19
0.80 0.10 0.11
Matches are distributed among these distances:
138 22 0.16
139 5 0.04
140 1 0.01
141 33 0.23
142 48 0.34
143 9 0.06
144 1 0.01
145 11 0.08
146 11 0.08
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (138 bp):
CAGTGTAAGACATGTCTGGGACATGCATCAACATTGAGACGAGAGCTAGTGTAAGACATGTATGG
GACATGCATCGGCCACGAGATATACAAGCTAGTGTAAAACCTATCTGAGACATGGCGTCAGCTTG
TTGTGTGT
Found at i:83284160 original size:28 final size:27
Alignment explanation
Indices: 83284097--83284165 Score: 111
Period size: 27 Copynumber: 2.5 Consensus size: 27
83284087 ATATTAAGTC
* *
83284097 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCAATATAATCAACT
83284124 CGCACACTTAGTGCAATATAATCAAACT
1 CGCACACTTAGTGCAATATAATC-AACT
83284152 CGCACACTTAGTGC
1 CGCACACTTAGTGC
83284166 TGTACAATTT
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.54
28 18 0.46
ACGTcount: A:0.33, C:0.29, G:0.13, T:0.25
Consensus pattern (27 bp):
CGCACACTTAGTGCAATATAATCAACT
Found at i:83284189 original size:29 final size:28
Alignment explanation
Indices: 83284096--83284191 Score: 95
Period size: 28 Copynumber: 3.4 Consensus size: 28
83284086 TATATTAAGT
* * *
83284096 CCGCACACTCAGTGCTATATAATC-AAC
1 CCGCACACTTAGTGCAATACAATCAAAC
* *
83284123 TCGCACACTTAGTGCAATATAATCAAAC
1 CCGCACACTTAGTGCAATACAATCAAAC
* ** *
83284151 TCGCACACTTAGTGCTGTACAATTTAAAC
1 CCGCACACTTAGTGCAATACAA-TCAAAC
83284180 CCGCACACTTAG
1 CCGCACACTTAG
83284192 CGCCAATCTC
Statistics
Matches: 59, Mismatches: 8, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
27 21 0.36
28 22 0.37
29 16 0.27
ACGTcount: A:0.33, C:0.29, G:0.12, T:0.25
Consensus pattern (28 bp):
CCGCACACTTAGTGCAATACAATCAAAC
Found at i:83294251 original size:79 final size:82
Alignment explanation
Indices: 83294140--83294324 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
83294130 GCTACTCGTT
* *
83294140 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
83294203 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
83294220 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
83294283 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
83294300 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
83294325 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:83294324 original size:40 final size:40
Alignment explanation
Indices: 83294121--83294324 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
83294111 CGGAATTTAA
** *
83294121 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
83294161 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
83294201 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
83294240 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
83294280 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
83294320 CCGGA
1 CCGGA
83294325 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:83309846 original size:40 final size:40
Alignment explanation
Indices: 83309694--83309839 Score: 172
Period size: 40 Copynumber: 3.6 Consensus size: 40
83309684 TTGAATGATG
* * * *
83309694 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
83309734 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
83309774 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
83309815 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
83309840 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
39 1 0.01
40 80 0.88
41 10 0.11
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:83309846 original size:80 final size:80
Alignment explanation
Indices: 83309694--83309872 Score: 186
Period size: 80 Copynumber: 2.2 Consensus size: 80
83309684 TTGAATGATG
* * *
83309694 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
**
83309759 GTGCGAGTTA-CTAAA
66 GAACGAG-TAGCTAAA
* * * * *
83309774 TCCGGGTTAAGTCCCGAAGGCAATTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-ATTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCAT
*
83309837 TTGAACGAGTAGCTATA
64 TTGAACGAGTAGCTAAA
* *
83309854 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
83309873 TACGTGAATT
Statistics
Matches: 83, Mismatches: 13, Indels: 7
0.81 0.13 0.07
Matches are distributed among these distances:
79 17 0.20
80 60 0.72
81 6 0.07
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
GAACGAGTAGCTAAA
Found at i:83313815 original size:40 final size:40
Alignment explanation
Indices: 83313715--83313935 Score: 276
Period size: 40 Copynumber: 5.5 Consensus size: 40
83313705 ACCCAAGTAT
* *
83313715 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
83313754 CTT-GGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
83313793 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAATTGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
83313833 CTTCGGGACTTAGCCC-GAGTATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGA-TATAGTC-ACTA---GCACAAATGC
*
83313876 CTTCGGGACTTAG-CCGGATATAGTAACT-GCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
83313914 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
83313936 CATCCGAATA
Statistics
Matches: 160, Mismatches: 11, Indels: 22
0.83 0.06 0.11
Matches are distributed among these distances:
38 30 0.19
39 38 0.24
40 58 0.36
42 10 0.06
43 24 0.15
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:83321912 original size:40 final size:40
Alignment explanation
Indices: 83321835--83322055 Score: 274
Period size: 40 Copynumber: 5.5 Consensus size: 40
83321825 ACCCAAGTAT
* *
83321835 CTTCGGGATTTAG-CC-GATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
83321873 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
83321913 CTTCGGGACTTAGCCCGGATATAGTCACTAGCAC-AATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
83321952 CTTCGGGACTTAGCCCGG-TATAG-CAACTGCTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-A---CTAGCACAAATGC
* *
83321994 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
83322034 CTTTGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
83322056 CATCCGAATA
Statistics
Matches: 162, Mismatches: 11, Indels: 18
0.85 0.06 0.09
Matches are distributed among these distances:
37 1 0.01
38 17 0.10
39 25 0.15
40 83 0.51
41 7 0.04
42 23 0.14
43 6 0.04
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:83322010 original size:81 final size:80
Alignment explanation
Indices: 83321835--83322055 Score: 274
Period size: 81 Copynumber: 2.8 Consensus size: 80
83321825 ACCCAAGTAT
* * *
83321835 CTTCGGGATTTAG-CC-GATATAG-CAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
**
83321897 TCACTAGCATGAATGC
65 TCACTAGCACAAATGC
83321913 CTTCGGGACTTAGCCCGGATATAGTCACTAGCAC-AATGCCTTCGGGACTTAGCCCGG-TATAG-
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
*
83321975 CAACTGCTCGCACAAATGC
66 C-A---CTAGCACAAATGC
* * *
83321994 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTTGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
83322056 CATCCGAATA
Statistics
Matches: 125, Mismatches: 9, Indels: 13
0.85 0.06 0.09
Matches are distributed among these distances:
77 1 0.01
78 18 0.14
79 24 0.19
80 14 0.11
81 43 0.34
82 22 0.18
83 3 0.02
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.25
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:83323999 original size:43 final size:43
Alignment explanation
Indices: 83323921--83324053 Score: 137
Period size: 43 Copynumber: 3.1 Consensus size: 43
83323911 AAACACATAT
* * * * *
83323921 ATCACATA-CAATGCC-ATATCCCAGATATGGTCTTACATGTT
1 ATCACATATCGATGCCAATGTCCCAAACATGGTCTTACATGTA
** *
83323962 ATCACATATCGATGCCCCTGTCCCAAACA-GGTGCTTACACGTA
1 ATCACATATCGATGCCAATGTCCCAAACATGGT-CTTACATGTA
* * *
83324005 ATCTCATATCGATGCCAATGTCCCAGACATGGTCTTACATGAA
1 ATCACATATCGATGCCAATGTCCCAAACATGGTCTTACATGTA
83324048 ATCACA
1 ATCACA
83324054 CCTCGGAAGT
Statistics
Matches: 74, Mismatches: 14, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
41 8 0.11
42 9 0.12
43 54 0.73
44 3 0.04
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.27
Consensus pattern (43 bp):
ATCACATATCGATGCCAATGTCCCAAACATGGTCTTACATGTA
Found at i:83324229 original size:22 final size:21
Alignment explanation
Indices: 83324189--83324229 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
83324179 AGCAACATAT
*
83324189 ATAAATATACAATTCAATTCG
1 ATAAATATACAATTAAATTCG
*
83324210 ATAATATATACATTTAAATT
1 ATAA-ATATACAATTAAATT
83324230 TAAAAGCATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.49, C:0.10, G:0.02, T:0.39
Consensus pattern (21 bp):
ATAAATATACAATTAAATTCG
Found at i:83331082 original size:25 final size:25
Alignment explanation
Indices: 83331049--83331123 Score: 73
Period size: 25 Copynumber: 3.0 Consensus size: 25
83331039 GTTGTAACAT
*
83331049 ATTTTAATGCTTTGATATTACATGA
1 ATTTAAATGCTTTGATATTACATGA
*
83331074 ATTTAAATGCTTT-ATTGTTATCATGA
1 ATTTAAATGCTTTGA-TATTA-CATGA
* * *
83331100 A-TTATATGCCTTGATATTTCATGA
1 ATTTAAATGCTTTGATATTACATGA
83331124 GTATATGATT
Statistics
Matches: 41, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
24 6 0.15
25 28 0.68
26 7 0.17
ACGTcount: A:0.31, C:0.09, G:0.12, T:0.48
Consensus pattern (25 bp):
ATTTAAATGCTTTGATATTACATGA
Found at i:83332203 original size:20 final size:20
Alignment explanation
Indices: 83332155--83332204 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
83332145 TGGTTGCTTG
*
83332155 TGGATGATGAGCTTGATGAA
1 TGGATTATGAGCTTGATGAA
* *
83332175 TGG-TATATGTGCTTGATGGA
1 TGGAT-TATGAGCTTGATGAA
83332195 TGGATTATGA
1 TGGATTATGA
83332205 CCAATAGGTG
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
19 1 0.04
20 22 0.92
21 1 0.04
ACGTcount: A:0.26, C:0.04, G:0.34, T:0.36
Consensus pattern (20 bp):
TGGATTATGAGCTTGATGAA
Found at i:83336470 original size:18 final size:19
Alignment explanation
Indices: 83336441--83336476 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
83336431 GGGGCTTGAA
83336441 CTTTTTGATCTTTGAATTC
1 CTTTTTGATCTTTGAATTC
83336460 CTTTTTG-TCTTTGAATT
1 CTTTTTGATCTTTGAATT
83336477 TAAGGTATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.14, C:0.14, G:0.11, T:0.61
Consensus pattern (19 bp):
CTTTTTGATCTTTGAATTC
Found at i:83337030 original size:17 final size:17
Alignment explanation
Indices: 83337005--83337039 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
83336995 TTATTATGCC
*
83337005 AATTTTATAAAGAAAAA
1 AATTATATAAAGAAAAA
*
83337022 AATTATATAAATAAAAA
1 AATTATATAAAGAAAAA
83337039 A
1 A
83337040 TAAAATAATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.29
Consensus pattern (17 bp):
AATTATATAAAGAAAAA
Found at i:83337044 original size:21 final size:20
Alignment explanation
Indices: 83337011--83337054 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 20
83337001 TGCCAATTTT
*
83337011 ATAAAGAAAAAAATTATATAA
1 ATAAAGAAAAAAATAAT-TAA
83337032 ATAAA-AAATAAAATAATTAA
1 ATAAAGAAA-AAAATAATTAA
83337052 ATA
1 ATA
83337055 GTATCAGGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 9 0.43
21 12 0.57
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.25
Consensus pattern (20 bp):
ATAAAGAAAAAAATAATTAA
Found at i:83341540 original size:28 final size:29
Alignment explanation
Indices: 83341401--83341575 Score: 246
Period size: 29 Copynumber: 6.1 Consensus size: 29
83341391 GAATGTATGT
*
83341401 ATATGAATGTGATTTGGGCTTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
** *
83341430 ATATGAATGTGATTTGCACCTAATGGACC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
83341459 ATACGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* * *
83341488 TTACGAATTTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
83341517 ATATGAATATG-TTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
83341545 ATATGAATGAGA-TTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
83341573 ATA
1 ATA
83341576 AGCATGTATG
Statistics
Matches: 130, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
28 45 0.35
29 85 0.65
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:83346799 original size:23 final size:22
Alignment explanation
Indices: 83346773--83346818 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 22
83346763 TGTGATGACG
83346773 TTATCTT-ATAAATATGTATGAAT
1 TTATCTTGA-AAATATGT-TGAAT
83346796 TTATCTTGAAAATATGTTGAAT
1 TTATCTTGAAAATATGTTGAAT
83346818 T
1 T
83346819 GGTTTGGTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 6 0.27
23 15 0.68
24 1 0.05
ACGTcount: A:0.37, C:0.04, G:0.11, T:0.48
Consensus pattern (22 bp):
TTATCTTGAAAATATGTTGAAT
Found at i:83348746 original size:16 final size:16
Alignment explanation
Indices: 83348711--83348748 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
83348701 GTAGATCGAC
*
83348711 AAAAGCCAAAATACTA
1 AAAAGCCAAAATACCA
*
83348727 AAAAGCCAAAATACCG
1 AAAAGCCAAAATACCA
83348743 AAAAGC
1 AAAAGC
83348749 TGAAAGTTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.61, C:0.21, G:0.11, T:0.08
Consensus pattern (16 bp):
AAAAGCCAAAATACCA
Found at i:83351704 original size:47 final size:47
Alignment explanation
Indices: 83351641--83352067 Score: 674
Period size: 47 Copynumber: 9.1 Consensus size: 47
83351631 GAAATGATAG
*
83351641 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
83351688 TAAGGCCTAATAGCCGATGTGATGAATGCGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
83351735 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
83351782 TAAGGCCTAATAGCCGATGTGATGAATGCGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
83351829 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
83351876 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
83351923 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
83351970 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*** * * * * * * *
83352017 CGGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
83352064 TAAG
1 TAAG
83352068 TCCCGAAGGG
Statistics
Matches: 348, Mismatches: 32, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 348 1.00
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:83352039 original size:141 final size:141
Alignment explanation
Indices: 83351641--83352774 Score: 776
Period size: 141 Copynumber: 7.7 Consensus size: 141
83351631 GAAATGATAG
* *
83351641 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
* *
83351706 GTGATGAATGCGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
66 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
83351771 TATATGTGTGA
131 TATATATGTGA
* * *
83351782 TAAGGCCTAATAGCCGATGTGATGAATGCGAAAGTGTATATATGTAATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
*
83351847 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
66 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
83351912 TATATATGTAA
131 TATATATGTGA
83351923 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
*** * * * * *
83351988 GTGATGAATGTGAAAGTGTATATATGTGACGGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTG
66 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
83352053 CATAAATGTGA
131 TATATATGTGA
* * * * *** **
83352064 TAAGTCCCGAA-GGGC-AT-T-ATAAACTTGTTTTAGTTGCTCATAAGCTAT-TGATTAAACCCA
1 TAAG-GCCTAATGGCCGATGTGATGAA--TGTGAAAG-TG-T-AT-A--TATGTGA-TAAGGCC-
* * ** * * * ***
83352124 TACTTGAATTCTAAATCGTGAT--AT-TGTAAGTTTATGAGTAT-TCGAATATGAAATGATAGTA
55 TA-ATG---GC-CGAT-GTGATGAATGTGAAAGTGTAT-A-TATGT-G-ATAAGGCCT-A-A-T-
*
83352185 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
106 -GG--------CCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
83352230 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
83352295 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
66 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
83352360 TATATATGTGA
131 TATATATGTGA
*** * * * * * * * * * *
83352371 CGGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGATAAGTCCCGAA-GGGC-A
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG-GCCTAATGGCCGA
* *** ** * * **
83352434 T-T-ATAAACTTGTTTTAGTTGCTCATAAGCTAT-TGATTAAACCCATACTTGAATTCTAAATCG
65 TGTGATGAA--TGTGAAAG-TG-T-AT-A--TATGTGA-TAAGGCC-TA-ATG---GC-CGAT-G
* *
83352496 TGAT--AT-TGTAAGTTTATGAGTAT-TCGAA
114 TGATGAATGTGAAAGTGTAT-A-TATGT-G-A
* *** *
83352524 TATGAAATGATAGTAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA-GTGTGATAAGG
1 TAAGGCCT-A-A-T--GG--------CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
*
83352588 CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGAT
53 CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
83352653 GAATGTGAAAGTGTATATATTTGA
118 GAATGTGAAAGTGTATATATGTGA
*** * * * *
83352677 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACGGGGCCGAGTGGCCAAC
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
* * *
83352742 GTGATGGATGTGAAAGTGCATAAATGTGATAAG
66 GTGATGAATGTGAAAGTGTATATATGTGATAAG
83352775 TCCCGAAGGG
Statistics
Matches: 760, Mismatches: 146, Indels: 174
0.70 0.14 0.16
Matches are distributed among these distances:
138 8 0.01
139 2 0.00
140 41 0.05
141 389 0.51
142 10 0.01
143 4 0.01
144 2 0.00
145 6 0.01
146 16 0.02
147 4 0.01
148 6 0.01
149 2 0.00
150 19 0.03
151 12 0.02
152 14 0.02
153 25 0.03
154 18 0.02
155 11 0.01
156 16 0.02
157 9 0.01
158 6 0.01
159 4 0.01
160 10 0.01
161 10 0.01
162 3 0.00
163 3 0.00
164 7 0.01
165 19 0.03
166 67 0.09
167 8 0.01
168 5 0.01
169 4 0.01
ACGTcount: A:0.32, C:0.10, G:0.28, T:0.30
Consensus pattern (141 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
TATATATGTGA
Found at i:83352242 original size:47 final size:47
Alignment explanation
Indices: 83352183--83352421 Score: 370
Period size: 47 Copynumber: 5.1 Consensus size: 47
83352173 GAAATGATAG
*
83352183 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
83352230 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
83352277 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
83352324 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*** * * * * * * *
83352371 CGGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
83352418 TAAG
1 TAAG
83352422 TCCCGAAGGG
Statistics
Matches: 176, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 176 1.00
ACGTcount: A:0.31, C:0.10, G:0.31, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:83352344 original size:94 final size:94
Alignment explanation
Indices: 83352183--83352774 Score: 412
Period size: 94 Copynumber: 6.0 Consensus size: 94
83352173 GAAATGATAG
*
83352183 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
*
83352248 GTGATGAATGTGAAAGTGTATATATGTAA
66 GTGATGAATGTGAAAGTGTATATATGTGA
83352277 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
83352342 GTGATGAATGTGAAAGTGTATATATGTGA
66 GTGATGAATGTGAAAGTGTATATATGTGA
*** * * * * * * * * * *
83352371 CGGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGATAAGTCCCGAA-GGGC-A
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG-GCCTAATGGCCGA
* ***
83352434 T-T-ATAAACTTGTTTTAGTTGCTCATAAGCTAT-TGA
65 TGTGATGAA--TGTGAAAG-TG-T-AT-A--TATGTGA
** * * ** * * * **
83352469 TTAAACCCATACTTGAATTCTAAATCGTGAT--AT-TGTAAGTTTATGAGTAT-TCGAATATGAA
1 -TAAGGCC-TA-ATG---GC-CGAT-GTGATGAATGTGAAAGTGTAT-A-TATGT-G-ATAAGGC
* *
83352530 ATGATAGTAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA-GTGTGA
54 CT-A-A-T--GGCC--------GATGTGATGAATGTGAAAGTGTATATATGTGA
*
83352583 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
*
83352648 GTGATGAATGTGAAAGTGTATATATTTGA
66 GTGATGAATGTGAAAGTGTATATATGTGA
*** * * * *
83352677 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACGGGGCCGAGTGGCCAAC
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
* * *
83352742 GTGATGGATGTGAAAGTGCATAAATGTGA
66 GTGATGAATGTGAAAGTGTATATATGTGA
83352771 TAAG
1 TAAG
83352775 TCCCGAAGGG
Statistics
Matches: 383, Mismatches: 71, Indels: 88
0.71 0.13 0.16
Matches are distributed among these distances:
91 4 0.01
92 1 0.00
93 32 0.08
94 228 0.60
95 5 0.01
96 2 0.01
97 1 0.00
98 3 0.01
99 5 0.01
100 1 0.00
101 6 0.02
103 9 0.02
104 6 0.02
105 6 0.02
106 20 0.05
107 6 0.02
108 5 0.01
109 9 0.02
111 5 0.01
112 2 0.01
113 6 0.02
114 3 0.01
116 1 0.00
117 2 0.01
118 1 0.00
119 2 0.01
120 7 0.02
121 1 0.00
122 4 0.01
ACGTcount: A:0.32, C:0.10, G:0.29, T:0.29
Consensus pattern (94 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATGTGA
Found at i:83352353 original size:354 final size:354
Alignment explanation
Indices: 83351829--83352788 Score: 1886
Period size: 354 Copynumber: 2.7 Consensus size: 354
83351819 ATATATGTAA
* *
83351829 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGAT
83351894 GTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
66 GTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
83351959 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACGGGGCC
131 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACGGGGCC
83352024 GAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGATAAGTCCCGAAGGGCATTATAAACT
196 GAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGATAAGTCCCGAAGGGCATTATAAACT
83352089 TGTTTTAGTTGCTCATAAGCTATTGATTAAACCCATACTTGAATTCTAAATCGTGATATTGTAAG
261 TGTTTTAGTTGCTCATAAGCTATTGATTAAACCCATACTTGAATTCTAAATCGTGATATTGTAAG
83352154 TTTATGAGTATTCGAATATGAAATGATAG
326 TTTATGAGTATTCGAATATGAAATGATAG
83352183 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGAT
83352248 GTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
66 GTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
83352313 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACGGGGCC
131 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACGGGGCC
83352378 GAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGATAAGTCCCGAAGGGCATTATAAACT
196 GAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGATAAGTCCCGAAGGGCATTATAAACT
83352443 TGTTTTAGTTGCTCATAAGCTATTGATTAAACCCATACTTGAATTCTAAATCGTGATATTGTAAG
261 TGTTTTAGTTGCTCATAAGCTATTGATTAAACCCATACTTGAATTCTAAATCGTGATATTGTAAG
83352508 TTTATGAGTATTCGAATATGAAATGATAG
326 TTTATGAGTATTCGAATATGAAATGATAG
83352537 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA-GTGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGAT
83352601 GTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
66 GTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
83352666 TATATATTTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACGGGGCC
131 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACGGGGCC
83352731 GAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGATAAGTCCCGAAGGGCATT
196 GAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGATAAGTCCCGAAGGGCATT
83352789 TGTGTCAGTA
Statistics
Matches: 603, Mismatches: 3, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
353 211 0.35
354 392 0.65
ACGTcount: A:0.32, C:0.11, G:0.28, T:0.30
Consensus pattern (354 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACGGGGCC
GAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGATAAGTCCCGAAGGGCATTATAAACT
TGTTTTAGTTGCTCATAAGCTATTGATTAAACCCATACTTGAATTCTAAATCGTGATATTGTAAG
TTTATGAGTATTCGAATATGAAATGATAG
Found at i:83352651 original size:47 final size:47
Alignment explanation
Indices: 83352537--83352774 Score: 352
Period size: 47 Copynumber: 5.1 Consensus size: 47
83352527 GAAATGATAG
*
83352537 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA-GTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
83352583 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
83352630 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATTTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
83352677 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*** * * * * * * *
83352724 CGGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
83352771 TAAG
1 TAAG
83352775 TCCCGAAGGG
Statistics
Matches: 173, Mismatches: 18, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
46 40 0.23
47 133 0.77
ACGTcount: A:0.32, C:0.10, G:0.31, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:83363791 original size:15 final size:15
Alignment explanation
Indices: 83363771--83363835 Score: 73
Period size: 15 Copynumber: 4.4 Consensus size: 15
83363761 GTATCTTGGG
83363771 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
83363786 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
83363801 TTT-TTCTA-TCTTGGA
1 TTTCTT-TATTC-TGGA
*
83363816 TTTCTTTATT-TGGT
1 TTTCTTTATTCTGGA
83363830 TTTCTT
1 TTTCTT
83363836 GTTATCTTTA
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
14 13 0.30
15 27 0.63
16 3 0.07
ACGTcount: A:0.09, C:0.12, G:0.14, T:0.65
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:83363802 original size:30 final size:30
Alignment explanation
Indices: 83363766--83363835 Score: 92
Period size: 30 Copynumber: 2.4 Consensus size: 30
83363756 GCATTGTATC
83363766 TTGGGTTTCTT-TAT-TCTGGATTTCTTTAT
1 TTGGGTTTCTTCTATCT-TGGATTTCTTTAT
83363795 TCTGGGTTT-TTCTATCTTGGATTTCTTTAT
1 T-TGGGTTTCTTCTATCTTGGATTTCTTTAT
*
83363825 TTGGTTTTCTT
1 TTGGGTTTCTT
83363836 GTTATCTTTA
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
29 9 0.25
30 26 0.72
31 1 0.03
ACGTcount: A:0.09, C:0.11, G:0.17, T:0.63
Consensus pattern (30 bp):
TTGGGTTTCTTCTATCTTGGATTTCTTTAT
Found at i:83366100 original size:49 final size:51
Alignment explanation
Indices: 83365972--83366100 Score: 145
Period size: 51 Copynumber: 2.6 Consensus size: 51
83365962 TTGTGAGGTT
** *
83365972 GCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGAAAACTGTGATC
1 GCATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGAAAACTGTGATC
* * * ** *
83366023 ACGTGTGTACTACTAAGTGCAGGCTACTACATGTACCAGACTA-T-TGGTC
1 GCATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGAAAACTGTGATC
* *
83366072 GCATGTGTAGTACTTAGTGCAGGATACTA
1 GCATGTGTAGTACTAAGTGCAGGCTACTA
83366101 TGCGTACCAG
Statistics
Matches: 64, Mismatches: 14, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
49 28 0.44
50 1 0.02
51 35 0.55
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (51 bp):
GCATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGAAAACTGTGATC
Found at i:83366108 original size:49 final size:51
Alignment explanation
Indices: 83365972--83366111 Score: 158
Period size: 49 Copynumber: 2.8 Consensus size: 51
83365962 TTGTGAGGTT
*
83365972 GCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGAAAACTGTGATC
1 GCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGAAAACTGTGATC
* * * ** ** *
83366023 ACGTGTGTACTACTAAGTGCAGGCTACTACATGTACCAGACTA-T-TGGTC
1 GCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGAAAACTGTGATC
* * *
83366072 GCATGTGTAGTACTTAGTGCAGGATACTATGCGTACCAGA
1 GCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
83366112 TAGCTTCGGC
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
49 36 0.50
50 1 0.01
51 35 0.49
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (51 bp):
GCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGAAAACTGTGATC
Found at i:83377231 original size:40 final size:40
Alignment explanation
Indices: 83377172--83377415 Score: 211
Period size: 40 Copynumber: 6.2 Consensus size: 40
83377162 ATGATAACCA
* * *
83377172 GGCTAAGTCTCG-AGAGCATTTGAGCTAGTGGCTAAT-TCCG
1 GGCTAAGTCCCGAAG-GCATTTGTGCGAGT-GCTAATATCCG
* * *
83377212 GGCTAAGTCTCGAAGGCATTCGTGCGAGCTACT-ATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAG-TGCTAATATCCG
* *
83377252 GGCTAAGTCCCGAAGGCGTTTGTGCGA--GCTATTATATCCA
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTGCTA--ATATCCG
*
83377292 GGCTAAGTCCCGAAGGCATTTGTGCGAGT--TATTATACCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTGCTAATAT-CCG
* * * *
83377331 GGCTAAGTCCCGAAGGGATTTGTGCAAGTTACT-ATAACCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAG-TGCTAATATCCG
* *
83377371 GGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCT-ATATCC-
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGT-GCTAATATCCG
83377410 GGCTAA
1 GGCTAA
83377416 ACTCTGAAGG
Statistics
Matches: 170, Mismatches: 21, Indels: 27
0.78 0.10 0.12
Matches are distributed among these distances:
37 2 0.01
38 3 0.02
39 37 0.22
40 122 0.72
41 5 0.03
42 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTGCTAATATCCG
Found at i:83377425 original size:79 final size:79
Alignment explanation
Indices: 83377209--83377415 Score: 258
Period size: 79 Copynumber: 2.6 Consensus size: 79
83377199 GTGGCTAATT
* *
83377209 CCGGGCTAAGTCTCGAAGGCATTCGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCGTTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCCGGGCTAAGTCCCGAAGGCGTTTG
* * *
83377274 TGCGAGCTATTATAT
65 TGCAAGCTACTATAA
* *
83377289 CCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-CCGGGCTAAGTCCCGAAGG-GATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCCGGGCTAAGTCCCGAAGGCG-TTT
*
83377352 GTGCAAGTTACTATAA
64 GTGCAAGCTACTATAA
* * *
83377368 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCC-GGCTAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATATCCGGGCTAA
83377416 ACTCTGAAGG
Statistics
Matches: 110, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
78 2 0.02
79 72 0.65
80 36 0.33
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATATCCGGGCTAAGTCCCGAAGGCGTTTGT
GCAAGCTACTATAA
Found at i:83384131 original size:40 final size:40
Alignment explanation
Indices: 83384048--83384271 Score: 240
Period size: 40 Copynumber: 5.6 Consensus size: 40
83384038 CGGATGATAA
* * *
83384048 CCGGGCTAAGTCCCG-AGAGCATTTGAGCTAG-TGGCTA-ATT
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGCAAGCT-ACTATA-T
** * * *
83384088 CCGGGCTAAGTTTCAAAGGCATTCGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGCTACTATAT
* *
83384128 CCGGGCTAAGTCCCGAAGGCGTTTGTGCAAGCTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGCTACTATAT
* * * *
83384168 CCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGCTACTATAT
* *
83384207 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGCTACTATAT
*
83384247 CCGGGCTAAATCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
83384272 AGCTAGTGGC
Statistics
Matches: 158, Mismatches: 22, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
39 36 0.23
40 118 0.75
41 4 0.03
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGCTACTATAT
Found at i:83384232 original size:79 final size:80
Alignment explanation
Indices: 83384103--83384271 Score: 250
Period size: 79 Copynumber: 2.1 Consensus size: 80
83384093 CTAAGTTTCA
* * * *
83384103 AAGGCATTCGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCGTTTGTGCAAGCTATTATAT
1 AAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGCTACTATAA
*
83384168 CCAGGCTAAGTCCCG
66 CCAGGCTAAATCCCG
* * *
83384183 AAGGCATTTGTGCGAGTTATTATA-CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAA
1 AAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGCTACTATAA
*
83384247 CCGGGCTAAATCCCG
66 CCAGGCTAAATCCCG
83384262 AAGGCATTTG
1 AAGGCATTTG
83384272 AGCTAGTGGC
Statistics
Matches: 80, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
79 59 0.74
80 21 0.26
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (80 bp):
AAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGCTACTATAA
CCAGGCTAAATCCCG
Found at i:83384302 original size:79 final size:79
Alignment explanation
Indices: 83384103--83384304 Score: 194
Period size: 79 Copynumber: 2.5 Consensus size: 79
83384093 CTAAGTTTCA
* * * * * *
83384103 AAGGCATTCGTGCGAGCT-ACTATATCCGGGCTAAGTCCCGAAGGCGTTTGTGCAAGCTATTATA
1 AAGGCATTTGAGCGAG-TGACTATA-CCGGACTAACTCCCGAAGGCATTTGTGCAAGCTACTATA
* *
83384167 TCCAGGCTAAGTCCCG
64 ACCAGGCTAAATCCCG
* * * * * *
83384183 AAGGCATTTGTGCGAGTTATTATACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAAC
1 AAGGCATTTGAGCGAGTGACTATACCGGACTAACTCCCGAAGGCATTTGTGCAAGCTACTATAAC
*
83384248 CGGGCTAAATCCCG
66 CAGGCTAAATCCCG
* *
83384262 AAGGCATTTGAGCTAGTGGCTATATCC-GACTAAACT-CCGAAGG
1 AAGGCATTTGAGCGAGTGACTATA-CCGGACT-AACTCCCGAAGG
83384305 TACTTGGTTT
Statistics
Matches: 104, Mismatches: 15, Indels: 7
0.83 0.12 0.06
Matches are distributed among these distances:
79 79 0.76
80 25 0.24
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (79 bp):
AAGGCATTTGAGCGAGTGACTATACCGGACTAACTCCCGAAGGCATTTGTGCAAGCTACTATAAC
CAGGCTAAATCCCG
Done.