Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 242 of 295
Found at i:83385058 original size:29 final size:29
Alignment explanation
Indices: 83385016--83385135 Score: 170
Period size: 29 Copynumber: 4.2 Consensus size: 29
83385006 GAAAGCATGT
83385016 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
83385045 ATATGAATGTGATTTGGGCCTAATAGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
83385074 ATACGAATGTTATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* * * *
83385103 ATTTGAATGAGA-TTGGGCCTAGTGGACC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
83385131 ATATG
1 ATATG
83385136 CGTGTATATA
Statistics
Matches: 80, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
28 18 0.22
29 62 0.77
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:83386288 original size:17 final size:18
Alignment explanation
Indices: 83386253--83386288 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
83386243 ATTCTATGGA
83386253 AAGGTTTTCAATGAAAAC
1 AAGGTTTTCAATGAAAAC
*
83386271 AAGGTTTTTAAT-AAAAC
1 AAGGTTTTCAATGAAAAC
83386288 A
1 A
83386289 CTTCAATGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.47, C:0.08, G:0.14, T:0.31
Consensus pattern (18 bp):
AAGGTTTTCAATGAAAAC
Found at i:83390696 original size:29 final size:29
Alignment explanation
Indices: 83390663--83390728 Score: 96
Period size: 29 Copynumber: 2.3 Consensus size: 29
83390653 ATTTCACTTC
* *
83390663 GGGCCATGCATATCGGATGATTTGGCTTT
1 GGGCCATGCATATCGGATAATTTAGCTTT
**
83390692 GGGCCATGTGTATCGGATAATTTAGCTTT
1 GGGCCATGCATATCGGATAATTTAGCTTT
83390721 GGGCCATG
1 GGGCCATG
83390729 ATAATATATC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.18, C:0.17, G:0.32, T:0.33
Consensus pattern (29 bp):
GGGCCATGCATATCGGATAATTTAGCTTT
Found at i:83395730 original size:79 final size:81
Alignment explanation
Indices: 83395628--83395812 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
83395618 GCTACTCATT
* *
83395628 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
83395691 GGATTTAGTAAC-TCGCA
64 GGATATAGTAACTTAGCA
* **
83395708 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
83395772 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
83395788 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
83395813 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:83395812 original size:40 final size:40
Alignment explanation
Indices: 83395628--83395812 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
83395618 GCTACTCATT
* *
83395628 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
83395668 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
83395708 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
83395747 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
83395788 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
83395813 CATCATTCAA
Statistics
Matches: 126, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.02
39 32 0.25
40 80 0.63
41 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:83400015 original size:43 final size:43
Alignment explanation
Indices: 83399965--83400165 Score: 244
Period size: 43 Copynumber: 4.7 Consensus size: 43
83399955 TGAGATTACA
* * *
83399965 TGTAAGACCATGTCTGGGACATTGGCATTG-TATTGTGATTGCG
1 TGTAAGACCATGTCTGGGACATTGGCATCGTTA-TATGATTTCG
** * *
83400008 CATAAGACCATTTCTGGGACATTGGCATCGTTATATGATTTTG
1 TGTAAGACCATGTCTGGGACATTGGCATCGTTATATGATTTCG
* * *
83400051 TGTAAGACCATGTCTGGGACATTGGCATTG-TATTGTGATTACG
1 TGTAAGACCATGTCTGGGACATTGGCATCGTTA-TATGATTTCG
* * *
83400094 TGTAAGACCATTTATGGGACATTGACATCGTTATATGATTTCG
1 TGTAAGACCATGTCTGGGACATTGGCATCGTTATATGATTTCG
*
83400137 TGTAAGACCATGTCTAGGACATTGGCATC
1 TGTAAGACCATGTCTGGGACATTGGCATC
83400166 AATATGTGAT
Statistics
Matches: 131, Mismatches: 24, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
42 2 0.02
43 125 0.95
44 4 0.03
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATTGGCATCGTTATATGATTTCG
Found at i:83400184 original size:43 final size:43
Alignment explanation
Indices: 83399958--83400190 Score: 227
Period size: 43 Copynumber: 5.4 Consensus size: 43
83399948 ACTAAGATGA
* *
83399958 GATTACATGTAAGACCATGTCTGGGACATTGGCAT-TGTATTGT
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGGTA-TGT
* ** * * *
83400001 GATTGCGCATAAGACCATTTCTGGGACATTGGCATCGTTATAT
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGGTATGT
** *
83400044 GATTTTGTGTAAGACCATGTCTGGGACATTGGCAT-TGTATTGT
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGGTA-TGT
* * * * *
83400087 GATTACGTGTAAGACCATTTATGGGACATTGACATCGTTATAT
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGGTATGT
* * **
83400130 GATTTCGTGTAAGACCATGTCTAGGACATTGGCATCAATATGT
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGGTATGT
* * *
83400173 GATAACATGTAAAACCAT
1 GATTACGTGTAAGACCAT
83400191 ATCTAGGATA
Statistics
Matches: 151, Mismatches: 36, Indels: 6
0.78 0.19 0.03
Matches are distributed among these distances:
42 2 0.01
43 145 0.96
44 4 0.03
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34
Consensus pattern (43 bp):
GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGGTATGT
Found at i:83400190 original size:86 final size:86
Alignment explanation
Indices: 83399965--83400164 Score: 337
Period size: 86 Copynumber: 2.3 Consensus size: 86
83399955 TGAGATTACA
* ** *
83399965 TGTAAGACCATGTCTGGGACATTGGCATTGTATTGTGATTGCGCATAAGACCATTTCTGGGACAT
1 TGTAAGACCATGTCTGGGACATTGGCATTGTATTGTGATTACGTGTAAGACCATTTATGGGACAT
* *
83400030 TGGCATCGTTATATGATTTTG
66 TGACATCGTTATATGATTTCG
83400051 TGTAAGACCATGTCTGGGACATTGGCATTGTATTGTGATTACGTGTAAGACCATTTATGGGACAT
1 TGTAAGACCATGTCTGGGACATTGGCATTGTATTGTGATTACGTGTAAGACCATTTATGGGACAT
83400116 TGACATCGTTATATGATTTCG
66 TGACATCGTTATATGATTTCG
*
83400137 TGTAAGACCATGTCTAGGACATTGGCAT
1 TGTAAGACCATGTCTGGGACATTGGCAT
83400165 CAATATGTGA
Statistics
Matches: 107, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
86 107 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (86 bp):
TGTAAGACCATGTCTGGGACATTGGCATTGTATTGTGATTACGTGTAAGACCATTTATGGGACAT
TGACATCGTTATATGATTTCG
Found at i:83400190 original size:129 final size:128
Alignment explanation
Indices: 83399958--83400211 Score: 285
Period size: 129 Copynumber: 2.0 Consensus size: 128
83399948 ACTAAGATGA
* * * * *
83399958 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATTGTGATTGCGCATAAGACCATTTCT
1 GATTACATGTAAGACCATGTATGGGACATTGACATCGTATTATGATTGCGCATAAGACCATGTCT
* ** **** * * *
83400023 GGGACATTGGCATCGTTATATGATTTTGTGTAAGACCATGTCTGGGACATTGGCATTGTATTGT
66 AGGACATTGGCATCAATATATGATAACATGTAAAACCATATCTAGGACA-TGGCATTGTATTGT
* * * **
83400087 GATTACGTGTAAGACCATTTATGGGACATTGACATCGT-TATATGATTTCGTGTAAGACCATGTC
1 GATTACATGTAAGACCATGTATGGGACATTGACATCGTAT-TATGATTGCGCATAAGACCATGTC
* *
83400151 TAGGACATTGGCATCAATATGTGATAACATGTAAAACCATATCTAGGATATGGCATTGTAT
65 TAGGACATTGGCATCAATATATGATAACATGTAAAACCATATCTAGGACATGGCATTGTAT
83400212 GAGTTATATG
Statistics
Matches: 102, Mismatches: 22, Indels: 3
0.80 0.17 0.02
Matches are distributed among these distances:
128 12 0.12
129 90 0.88
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34
Consensus pattern (128 bp):
GATTACATGTAAGACCATGTATGGGACATTGACATCGTATTATGATTGCGCATAAGACCATGTCT
AGGACATTGGCATCAATATATGATAACATGTAAAACCATATCTAGGACATGGCATTGTATTGT
Found at i:83401828 original size:40 final size:39
Alignment explanation
Indices: 83401784--83402005 Score: 266
Period size: 40 Copynumber: 5.6 Consensus size: 39
83401774 CCACTAGCTT
*
83401784 AAATGCCTTCGGGACTTAGCCCGATTATAGTAACTTGCAC
1 AAATGCCTTCGGGACTTAGCCCGA-TATAGTAACTCGCAC
* *
83401824 AAATGCCTTCGGGACTTAGCCCGGTATAATAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGATATAGTAACTCGCAC
* *
83401863 AAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCGCAC
1 AAATGCCTTCGGGACTTAGCCC-GATATAGTAACTCGCAC
* * *
83401903 AAACGCCTTCGGGACTTAGCCCGGATATAGTAGCTTGCAC
1 AAATGCCTTCGGGACTTAGCCC-GATATAGTAACTCGCAC
* * ** * *
83401943 GAATGCCTTCGGGACTTAGCCCGAAATTAGCCACTAGCTC
1 AAATGCCTTCGGGACTTAGCCCGATA-TAGTAACTCGCAC
83401983 AAATG-CTCTCGGGACTTAGCCCG
1 AAATGCCT-TCGGGACTTAGCCCG
83402006 GTTATCATCC
Statistics
Matches: 162, Mismatches: 17, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
39 40 0.25
40 122 0.75
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (39 bp):
AAATGCCTTCGGGACTTAGCCCGATATAGTAACTCGCAC
Found at i:83401881 original size:79 final size:78
Alignment explanation
Indices: 83401784--83402007 Score: 279
Period size: 79 Copynumber: 2.8 Consensus size: 78
83401774 CCACTAGCTT
*
83401784 AAATGCCTTCGGGACTTAGCCCGATTATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGT
1 AAATGCCTTCGGGACTTAGCCCGA-TATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGT
83401849 ATAATAACTCGCAC
65 ATAATAACTCGCAC
* * * *
83401863 AAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCGCACAAACGCCTTCGGGACTTAGCCCGGA
1 AAATGCCTTCGGGACTTAGCCC-GATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGG-
* * *
83401928 TATAGTAGCTTGCAC
64 TATAATAACTCGCAC
* * ** *
83401943 GAATGCCTTCGGGACTTAGCCCGAAATTAGCCACTAGCTCAAATG-CTCTCGGGACTTAGCCCGG
1 AAATGCCTTCGGGACTTAGCCCGATA-TAGTAACTAGCACAAATGCCT-TCGGGACTTAGCCCGG
83402007 T
64 T
83402008 TATCATCCGA
Statistics
Matches: 125, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
79 63 0.50
80 62 0.50
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (78 bp):
AAATGCCTTCGGGACTTAGCCCGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTA
TAATAACTCGCAC
Found at i:83404262 original size:21 final size:21
Alignment explanation
Indices: 83404238--83404282 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
83404228 AATGAAATGG
*
83404238 TTGTGAATGAGATAGCATATT
1 TTGTGAATGAAATAGCATATT
* * *
83404259 TTGTGTATTAAATGGCATATT
1 TTGTGAATGAAATAGCATATT
83404280 TTG
1 TTG
83404283 GTTGTTTAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.29, C:0.04, G:0.22, T:0.44
Consensus pattern (21 bp):
TTGTGAATGAAATAGCATATT
Found at i:83411624 original size:5 final size:5
Alignment explanation
Indices: 83411614--83411645 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
83411604 CAATTTGTGA
83411614 AAAAT AAAAT AAAAT -AAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
83411646 GAACACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:83411634 original size:14 final size:14
Alignment explanation
Indices: 83411615--83411645 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
83411605 AATTTGTGAA
83411615 AAATAAAATAAAAT
1 AAATAAAATAAAAT
83411629 AAATAAAATAAAAT
1 AAATAAAATAAAAT
83411643 AAA
1 AAA
83411646 GAACACACAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (14 bp):
AAATAAAATAAAAT
Found at i:83422786 original size:39 final size:39
Alignment explanation
Indices: 83422703--83422799 Score: 108
Period size: 39 Copynumber: 2.5 Consensus size: 39
83422693 TGAAACCAAT
*
83422703 TACCAGCAC-AAGCCTGCGGGAATTTAAACCCGATATAA
1 TACCAGCACGAAGCCTGCGGGAATTTAAACCCGACATAA
* * * *
83422741 TACCAGCTCGAAGCCTGCGGGACTTT-AGCCCGGACATAT
1 TACCAGCACGAAGCCTGCGGGAATTTAAACCC-GACATAA
* *
83422780 TTCCAGCACGTAGCCTGCGG
1 TACCAGCACGAAGCCTGCGG
83422800 ACCTTAAGTC
Statistics
Matches: 49, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
38 12 0.24
39 37 0.76
ACGTcount: A:0.27, C:0.30, G:0.24, T:0.20
Consensus pattern (39 bp):
TACCAGCACGAAGCCTGCGGGAATTTAAACCCGACATAA
Found at i:83422856 original size:39 final size:39
Alignment explanation
Indices: 83422770--83422856 Score: 120
Period size: 39 Copynumber: 2.2 Consensus size: 39
83422760 GGACTTTAGC
* * * *
83422770 CCGGACATATTTCCAGCACGTAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTACGGACCTTAAGT
**
83422809 CCAAATATAATTCCAGCACATAGCCTACGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTACGGACCTTAAGT
83422848 CCGGATATA
1 CCGGATATA
83422857 CATCACTGAA
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTACGGACCTTAAGT
Found at i:83428375 original size:27 final size:26
Alignment explanation
Indices: 83428329--83428380 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
83428319 CTTCAACACC
* * *
83428329 TAGGGGTATTTTGGTCATTTTCTCCTA
1 TAGGGGCATTTTGATAATTTT-TCCTA
83428356 TAGGGGCATTTTGATAATTTTTCCT
1 TAGGGGCATTTTGATAATTTTTCCT
83428381 TAATTATGGT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 4 0.18
27 18 0.82
ACGTcount: A:0.17, C:0.13, G:0.21, T:0.48
Consensus pattern (26 bp):
TAGGGGCATTTTGATAATTTTTCCTA
Found at i:83428707 original size:29 final size:29
Alignment explanation
Indices: 83428641--83428759 Score: 154
Period size: 29 Copynumber: 4.2 Consensus size: 29
83428631 TACATACATG
*
83428641 CATATGGCCCACTAGGCCCAA-TCTTATT
1 CATATGGCCCACTAGGCCCAATTCATATT
*
83428669 CAAATGGCCCATCT-GGCCCAATTCATATT
1 CATATGGCCCA-CTAGGCCCAATTCATATT
* *
83428698 CTTATGGCCCACTAGGCCCAATTCACATT
1 CATATGGCCCACTAGGCCCAATTCATATT
* *
83428727 CATATGGCCCATTAGGCCCAAATCATATT
1 CATATGGCCCACTAGGCCCAATTCATATT
83428756 -ATAT
1 CATAT
83428760 TCATGCTCAC
Statistics
Matches: 79, Mismatches: 9, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
28 23 0.29
29 56 0.71
ACGTcount: A:0.28, C:0.30, G:0.13, T:0.29
Consensus pattern (29 bp):
CATATGGCCCACTAGGCCCAATTCATATT
Found at i:83428995 original size:16 final size:16
Alignment explanation
Indices: 83428976--83429012 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
83428966 AAACTTTCAG
83428976 CTTTTCAGCATTTCGA
1 CTTTTCAGCATTTCGA
* *
83428992 CTTTTCGGCATTTCGG
1 CTTTTCAGCATTTCGA
83429008 CTTTT
1 CTTTT
83429013 ATCGATTCAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.11, C:0.24, G:0.16, T:0.49
Consensus pattern (16 bp):
CTTTTCAGCATTTCGA
Found at i:83431809 original size:21 final size:22
Alignment explanation
Indices: 83431765--83431811 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 22
83431755 ATTAATATTT
*
83431765 TAATATATTACATCATTAAATA
1 TAATATATTAAATCATTAAATA
* *
83431787 TAATATTTTAAAT-ATTTAATA
1 TAATATATTAAATCATTAAATA
83431808 TAAT
1 TAAT
83431812 TTAATATAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 11 0.50
22 11 0.50
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (22 bp):
TAATATATTAAATCATTAAATA
Found at i:83431818 original size:31 final size:30
Alignment explanation
Indices: 83431757--83431820 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 30
83431747 ATTGAATTAT
*
83431757 TAATATTTTAATATATTACATCATTAAATA
1 TAATATTTTAATATATTACATAATTAAATA
* *
83431787 TAATATTTTAA-ATATTTAATATAATTTAATA
1 TAATATTTTAATATA-TT-ACATAATTAAATA
83431818 TAA
1 TAA
83431821 AAATAATTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
29 3 0.10
30 13 0.45
31 13 0.45
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (30 bp):
TAATATTTTAATATATTACATAATTAAATA
Found at i:83432047 original size:16 final size:16
Alignment explanation
Indices: 83432026--83432056 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
83432016 TGAATTAATG
83432026 ATTACAAATCTATTCC
1 ATTACAAATCTATTCC
83432042 ATTACAAATCTATTC
1 ATTACAAATCTATTC
83432057 GATTTCAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.39, C:0.23, G:0.00, T:0.39
Consensus pattern (16 bp):
ATTACAAATCTATTCC
Found at i:83435160 original size:27 final size:28
Alignment explanation
Indices: 83435076--83435173 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
83435066 CATGAGATTG
* * * *
83435076 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
83435105 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
83435133 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
83435160 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
83435174 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:83435184 original size:27 final size:27
Alignment explanation
Indices: 83435104--83435186 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
83435094 TAAATTGTAC
* *
83435104 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
83435132 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
83435159 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
83435186 A
1 A
83435187 TTTTTAATCA
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:83435187 original size:29 final size:27
Alignment explanation
Indices: 83435076--83435187 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
83435066 CATGAGATTG
** * *
83435076 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
83435105 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
83435133 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
83435160 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
83435188 TTTTAATCAC
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:83443232 original size:27 final size:28
Alignment explanation
Indices: 83443148--83443245 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
83443138 CATGAGATTG
* * * *
83443148 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
83443177 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
83443205 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
83443232 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
83443246 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:83443256 original size:27 final size:27
Alignment explanation
Indices: 83443176--83443258 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
83443166 TAAATTGTAC
* *
83443176 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
83443204 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
83443231 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
83443258 A
1 A
83443259 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:83443259 original size:29 final size:27
Alignment explanation
Indices: 83443148--83443259 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
83443138 CATGAGATTG
** * *
83443148 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
83443177 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
83443205 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
83443232 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
83443260 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:83445398 original size:42 final size:41
Alignment explanation
Indices: 83445345--83445475 Score: 138
Period size: 45 Copynumber: 3.0 Consensus size: 41
83445335 AAAGTGCAAG
83445345 TTTATGGCTAGTGATTTTATCCGCGGCTAAGCTCCGAAGGCAT
1 TTTAT-GCTAGTGATTTTATCCGCGGCTAAGC-CCGAAGGCAT
83445388 TTTATGCTAGTGATTTTTATTCCGGCGGCTAAGACCCGAAGGCAT
1 TTTATGCTAGTGA-TTTTA-TCC-GCGGCTAAG-CCCGAAGGCAT
** * ** *
83445433 TTGGTGCGAGTTGATAGTATCCG-GGCTAAGACCGAAGGCAT
1 TTTATGCTAG-TGATTTTATCCGCGGCTAAGCCCGAAGGCAT
83445474 TT
1 TT
83445476 GTGCGAGTTG
Statistics
Matches: 77, Mismatches: 6, Indels: 12
0.81 0.06 0.13
Matches are distributed among these distances:
41 12 0.16
42 15 0.19
43 11 0.14
44 6 0.08
45 29 0.38
46 4 0.05
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.31
Consensus pattern (41 bp):
TTTATGCTAGTGATTTTATCCGCGGCTAAGCCCGAAGGCAT
Found at i:83445504 original size:40 final size:41
Alignment explanation
Indices: 83445414--83445493 Score: 119
Period size: 40 Copynumber: 2.0 Consensus size: 41
83445404 TTATTCCGGC
*
83445414 GGCTAAGACCCGAAGGCATTTGGTGCGAGTTGATAGTATCCG
1 GGCTAAGA-CCGAAGGCATTTGGTGCGAGTTGATAGTACCCG
*
83445456 GGCTAAGACCGAAGGCATTT-GTGCGAGTTGCTA-TACCC
1 GGCTAAGACCGAAGGCATTTGGTGCGAGTTGATAGTACCC
83445494 CGGTTTAAGA
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
39 4 0.11
40 12 0.33
41 12 0.33
42 8 0.22
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.24
Consensus pattern (41 bp):
GGCTAAGACCGAAGGCATTTGGTGCGAGTTGATAGTACCCG
Found at i:83453827 original size:40 final size:40
Alignment explanation
Indices: 83453759--83453940 Score: 219
Period size: 40 Copynumber: 4.6 Consensus size: 40
83453749 ATTTGAATGA
*
83453759 TATCCGGGCTAAG--TCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
*
83453797 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
* * *
83453837 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTT
* * * *
83453877 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTT
* *
83453917 TACCCGGGTTAAGACCCGAAGGCA
1 TATCCGGGCTAAGACCCGAAGGCA
83453941 ATTGTGTGTG
Statistics
Matches: 133, Mismatches: 7, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
38 13 0.10
40 117 0.88
41 3 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
Found at i:83453895 original size:80 final size:80
Alignment explanation
Indices: 83453758--83453967 Score: 232
Period size: 80 Copynumber: 2.7 Consensus size: 80
83453748 CATTTGAATG
* * * * *
83453758 ATATCCGGGCTAAG--TCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCA
* *
83453821 TTTATGCTAG-TGATT
66 TTTATGCGAGTTG-CT
*
83453836 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATTATATCCGGGCTAAGACCCGAAGGC
*
83453900 ATTTGTGCGAGTTGCT
65 ATTTATGCGAGTTGCT
* * * * * *
83453916 ATACCCGGGTTAAGACCCGAAGGCAATTGTGTGTGTGGTTATATCC-GGCTAA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTATATCCGGGCTAA
83453968 ATTCTGAAGA
Statistics
Matches: 111, Mismatches: 16, Indels: 9
0.82 0.12 0.07
Matches are distributed among these distances:
78 13 0.12
79 8 0.07
80 85 0.77
81 5 0.05
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.29
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCA
TTTATGCGAGTTGCT
Found at i:83458684 original size:16 final size:16
Alignment explanation
Indices: 83458656--83458688 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
83458646 AATAATATTA
83458656 AAAATTGTAATAAAAT
1 AAAATTGTAATAAAAT
83458672 AAAATATGT-ATAAAAT
1 AAAAT-TGTAATAAAAT
83458688 A
1 A
83458689 TAAAAGAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 13 0.81
17 3 0.19
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.30
Consensus pattern (16 bp):
AAAATTGTAATAAAAT
Found at i:83459758 original size:42 final size:44
Alignment explanation
Indices: 83459698--83459782 Score: 120
Period size: 42 Copynumber: 2.0 Consensus size: 44
83459688 GTCACTTTAA
* * *
83459698 TATTAAATTAATATAATATTTA-T-CAAGATAAATATTAAATCT
1 TATTAAAATAATAGAATATTTACTACAAGATAAACATTAAATCT
83459740 TATTAAAATAATAGAATATTTATCTACAAGATAAACATTAAAT
1 TATTAAAATAATAGAATATTTA-CTACAAGATAAACATTAAAT
83459783 TAAATTAAAG
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
42 20 0.54
44 1 0.03
45 16 0.43
ACGTcount: A:0.52, C:0.06, G:0.04, T:0.39
Consensus pattern (44 bp):
TATTAAAATAATAGAATATTTACTACAAGATAAACATTAAATCT
Found at i:83459790 original size:45 final size:42
Alignment explanation
Indices: 83459694--83459791 Score: 108
Period size: 45 Copynumber: 2.2 Consensus size: 42
83459684 CTTAGTCACT
* * *
83459694 TTAATATTAAATTAATATAATATTTATCAAGATAAATATTAAA
1 TTAA-ATTAAAATAATAGAATATTTATCAAGATAAACATTAAA
*
83459737 TCT-TATTAAAATAATAGAATATTTATCTACAAGATAAACATTAAA
1 T-TAAATTAAAATAATAGAATATTTA--T-CAAGATAAACATTAAA
83459782 TTAAATTAAA
1 TTAAATTAAA
83459792 GATTAAGATA
Statistics
Matches: 45, Mismatches: 5, Indels: 8
0.78 0.09 0.14
Matches are distributed among these distances:
42 19 0.42
43 1 0.02
44 3 0.07
45 22 0.49
ACGTcount: A:0.53, C:0.05, G:0.03, T:0.39
Consensus pattern (42 bp):
TTAAATTAAAATAATAGAATATTTATCAAGATAAACATTAAA
Found at i:83462395 original size:28 final size:28
Alignment explanation
Indices: 83462295--83462400 Score: 76
Period size: 28 Copynumber: 3.7 Consensus size: 28
83462285 ACTTGTAGTA
* * *
83462295 GGGCTACGGCCCAGATTGACATTGATAT
1 GGGCTAAGGCCCAGATTAATATTGATAT
*
83462323 GGGCT-AGGCCCAG-TATACT-TTGATACTGT
1 GGGCTAAGGCCCAGAT-TAATATTGATA---T
*
83462352 AAGGGCCTATGGCCCAGATTAATATTGATAT
1 --GGG-CTAAGGCCCAGATTAATATTGATAT
83462383 GGGCTAAGGCCCA-ATTAA
1 GGGCTAAGGCCCAGATTAA
83462401 CTCTGATTTC
Statistics
Matches: 61, Mismatches: 7, Indels: 21
0.69 0.08 0.24
Matches are distributed among these distances:
26 7 0.11
27 13 0.21
28 14 0.23
29 4 0.07
31 4 0.07
32 2 0.03
33 10 0.16
34 7 0.11
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.26
Consensus pattern (28 bp):
GGGCTAAGGCCCAGATTAATATTGATAT
Found at i:83465760 original size:41 final size:42
Alignment explanation
Indices: 83465658--83465806 Score: 198
Period size: 42 Copynumber: 3.6 Consensus size: 42
83465648 CATAATCGAT
**
83465658 ATCTCGCACACTAAGTGCTGTATATAGCCGAAGCTATCTCAA
1 ATCTCGCACACTAAGTGCCATATATAGCCGAAGCTATCTCAA
*
83465700 ATCTAGCACACTAAGTGCCATATATAGCCGAAGCTATCTC-A
1 ATCTCGCACACTAAGTGCCATATATAGCCGAAGCTATCTCAA
* * *
83465741 ATCTCGCACACTCAA-TGCCATATATAGACGAAGCTATGTCGA
1 ATCTCGCACACT-AAGTGCCATATATAGCCGAAGCTATCTCAA
*
83465783 A--TCGCACACTAAGTGCCACATATA
1 ATCTCGCACACTAAGTGCCATATATA
83465807 TAGTTGATTT
Statistics
Matches: 97, Mismatches: 7, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
39 2 0.02
40 19 0.20
41 35 0.36
42 41 0.42
ACGTcount: A:0.34, C:0.27, G:0.15, T:0.24
Consensus pattern (42 bp):
ATCTCGCACACTAAGTGCCATATATAGCCGAAGCTATCTCAA
Found at i:83470302 original size:27 final size:27
Alignment explanation
Indices: 83470272--83470476 Score: 205
Period size: 27 Copynumber: 7.6 Consensus size: 27
83470262 ATATTAAGTC
* *
83470272 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
83470299 CGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
*
83470327 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
** ** *
83470354 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
** **
83470381 CGCACACTTAGTGC-ATCATTTTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* ** *
83470408 CGCACACTTAGTGCAACATGGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
** *
83470435 CGCACACTTAGTGCTACATAGCCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
83470462 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
83470477 GTACAATTTA
Statistics
Matches: 155, Mismatches: 20, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
27 129 0.83
28 26 0.17
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:83470411 original size:54 final size:54
Alignment explanation
Indices: 83470272--83470475 Score: 257
Period size: 54 Copynumber: 3.8 Consensus size: 54
83470262 ATATTAAGTC
* * * **
83470272 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCACATGGTCAAA-T
* *
83470327 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCACATGGTCAAAT
** ** *
83470381 CGCACACTTAGTGC-ATCATTTTCATTTCGCACACTTAGTGCAACATGGTCAAAT
1 CGCACACTTAGTGCTA-CATAGTCAACTCGCACACTTAGTGCCACATGGTCAAAT
* *
83470435 CGCACACTTAGTGCTACATAGCCAAATCGCACACTTAGTGC
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGC
83470476 TGTACAATTT
Statistics
Matches: 128, Mismatches: 19, Indels: 5
0.84 0.12 0.03
Matches are distributed among these distances:
53 1 0.01
54 80 0.62
55 47 0.37
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCACATGGTCAAAT
Found at i:83470441 original size:81 final size:81
Alignment explanation
Indices: 83470326--83470475 Score: 228
Period size: 81 Copynumber: 1.9 Consensus size: 81
83470316 ATAATCAAAC
* * * * * *
83470326 TCGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCGCATGGTCAATTCGCACACTTA
1 TCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCCACATAGCCAAATCGCACACTTA
83470391 GTGCATCATTTTCATT
66 GTGCATCATTTTCATT
* *
83470407 TCGCACACTTAGTGCAACATGGTCAAATCGCACACTTAGTGCTACATAGCCAAATCGCACACTTA
1 TCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCCACATAGCCAAATCGCACACTTA
83470472 GTGC
66 GTGC
83470476 TGTACAATTT
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 61 1.00
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.27
Consensus pattern (81 bp):
TCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCCACATAGCCAAATCGCACACTTA
GTGCATCATTTTCATT
Found at i:83478183 original size:27 final size:27
Alignment explanation
Indices: 83478153--83478356 Score: 205
Period size: 27 Copynumber: 7.6 Consensus size: 27
83478143 ATATTAAGTC
* *
83478153 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
83478180 CGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
*
83478208 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
** ** *
83478235 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
83478262 CGCACACTTAGTGC-ATCAT-TTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* ** *
83478288 CGCACACTTAGTGCAACATGGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
** *
83478315 CGCACACTTAGTGCTACATAGCCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
83478342 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
83478357 GTACAATTTA
Statistics
Matches: 155, Mismatches: 18, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
26 22 0.14
27 108 0.70
28 25 0.16
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:83478308 original size:53 final size:54
Alignment explanation
Indices: 83478153--83478355 Score: 257
Period size: 53 Copynumber: 3.8 Consensus size: 54
83478143 ATATTAAGTC
* * * **
83478153 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCACATGGTCAAA-T
* *
83478208 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCACATGGTCAAAT
* ** *
83478262 CGCACACTTAGTGC-ATCAT-TTCATTTCGCACACTTAGTGCAACATGGTCAAAT
1 CGCACACTTAGTGCTA-CATAGTCAACTCGCACACTTAGTGCCACATGGTCAAAT
* *
83478315 CGCACACTTAGTGCTACATAGCCAAATCGCACACTTAGTGC
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGC
83478356 TGTACAATTT
Statistics
Matches: 128, Mismatches: 17, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
53 46 0.36
54 36 0.28
55 46 0.36
ACGTcount: A:0.30, C:0.30, G:0.15, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCACATGGTCAAAT
Found at i:83478321 original size:80 final size:80
Alignment explanation
Indices: 83478207--83478355 Score: 226
Period size: 80 Copynumber: 1.9 Consensus size: 80
83478197 ATAATCAAAC
* * * * * *
83478207 TCGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCGCATGGTCAATTCGCACACTTA
1 TCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCCACATAGCCAAATCGCACACTTA
83478272 GTGCATCATTTCATT
66 GTGCATCATTTCATT
* *
83478287 TCGCACACTTAGTGCAACATGGTCAAATCGCACACTTAGTGCTACATAGCCAAATCGCACACTTA
1 TCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCCACATAGCCAAATCGCACACTTA
83478352 GTGC
66 GTGC
83478356 TGTACAATTT
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
80 61 1.00
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.27
Consensus pattern (80 bp):
TCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCCACATAGCCAAATCGCACACTTA
GTGCATCATTTCATT
Found at i:83482126 original size:40 final size:42
Alignment explanation
Indices: 83482064--83482191 Score: 122
Period size: 42 Copynumber: 3.1 Consensus size: 42
83482054 ATGGCATTGA
* * **
83482064 CATCGATATGTGA-TCCTATGTAAGACCATATCT-GG-GTTGG
1 CATCGATATGTGATTTC-GTGTAAGACCATATCTAGGACATGG
*
83482104 CATCGATATGTGATTTCGTGTAAGACCATGTCTAGGACATGG
1 CATCGATATGTGATTTCGTGTAAGACCATATCTAGGACATGG
* * *
83482146 CATCGATATGAGACTTT-GTGTAAGACCAT-TGTTGGACTATGG
1 CATCGATATGTGA-TTTCGTGTAAGACCATATCTAGGAC-ATGG
83482188 CATC
1 CATC
83482192 AAGTAAATGA
Statistics
Matches: 75, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
40 27 0.36
41 10 0.13
42 35 0.47
43 3 0.04
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (42 bp):
CATCGATATGTGATTTCGTGTAAGACCATATCTAGGACATGG
Found at i:83482167 original size:42 final size:42
Alignment explanation
Indices: 83482101--83482191 Score: 125
Period size: 42 Copynumber: 2.2 Consensus size: 42
83482091 ATATCTGGGT
*
83482101 TGGCATCGATATGTGATTTCGTGTAAGACCA-TGTCTAGGAC-A
1 TGGCATCGATATGAGATTTCGTGTAAGACCATTGT-T-GGACTA
83482143 TGGCATCGATATGAGACTTT-GTGTAAGACCATTGTTGGACTA
1 TGGCATCGATATGAGA-TTTCGTGTAAGACCATTGTTGGACTA
83482185 TGGCATC
1 TGGCATC
83482192 AAGTAAATGA
Statistics
Matches: 45, Mismatches: 1, Indels: 6
0.87 0.02 0.12
Matches are distributed among these distances:
41 4 0.09
42 35 0.78
43 6 0.13
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.32
Consensus pattern (42 bp):
TGGCATCGATATGAGATTTCGTGTAAGACCATTGTTGGACTA
Found at i:83486988 original size:23 final size:23
Alignment explanation
Indices: 83486914--83486998 Score: 89
Period size: 24 Copynumber: 3.6 Consensus size: 23
83486904 TTTATTGCAA
* *
83486914 TATTGAGTGGCTAGGTCACAACGT
1 TATTGAGTGGCTTGG-CACAATGT
* * * *
83486938 TATTAAGTGGCTTGACCATAATGC
1 TATTGAGTGGCTTG-GCACAATGT
*
83486962 TATTGAGTGGTTTGGCACAATGT
1 TATTGAGTGGCTTGGCACAATGT
83486985 TATTGAGTGGCTTG
1 TATTGAGTGGCTTG
83486999 TCCACAACGT
Statistics
Matches: 48, Mismatches: 12, Indels: 3
0.76 0.19 0.05
Matches are distributed among these distances:
23 19 0.40
24 29 0.60
ACGTcount: A:0.24, C:0.13, G:0.28, T:0.35
Consensus pattern (23 bp):
TATTGAGTGGCTTGGCACAATGT
Found at i:83491975 original size:19 final size:19
Alignment explanation
Indices: 83491948--83491988 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
83491938 TTGAATTTGA
*
83491948 ATGTTTAGTTTTTCAATTG
1 ATGTGTAGTTTTTCAATTG
83491967 ATGTGTAGTTTTTCAATTG
1 ATGTGTAGTTTTTCAATTG
83491986 ATG
1 ATG
83491989 GATGGTATTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.22, C:0.05, G:0.20, T:0.54
Consensus pattern (19 bp):
ATGTGTAGTTTTTCAATTG
Found at i:83498632 original size:46 final size:45
Alignment explanation
Indices: 83498576--83498746 Score: 175
Period size: 46 Copynumber: 3.8 Consensus size: 45
83498566 TGGTTGAGCA
* *
83498576 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AACG
* * * * * *
83498622 TCTGAACTCGTTGAGTTGAGTCCGAGTTCA-TGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-A-ACG
* *
83498667 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AACG
* * *
83498713 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
83498747 GGGGCGGGTT
Statistics
Matches: 103, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
44 2 0.02
45 34 0.33
46 65 0.63
47 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.31
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACG
Found at i:83498728 original size:91 final size:91
Alignment explanation
Indices: 83498573--83498742 Score: 259
Period size: 91 Copynumber: 1.9 Consensus size: 91
83498563 GGATGGTTGA
* *** *
83498573 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACCCGAACTCGTTGAGT
83498638 TGAGTCCGAGTTCATGATGTAACTAG
66 TGAGTCCGAGTTCATGATGTAACTAG
* * *
83498664 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACACCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACCCGAACTCGTTGAGT
*
83498729 TGAGTCTGAGTTCA
66 TGAGTCCGAGTTCA
83498743 CTTAGGGGCG
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
91 70 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (91 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACCCGAACTCGTTGAGT
TGAGTCCGAGTTCATGATGTAACTAG
Found at i:83503175 original size:48 final size:48
Alignment explanation
Indices: 83503104--83503195 Score: 139
Period size: 48 Copynumber: 1.9 Consensus size: 48
83503094 CATAATGACA
* *
83503104 TGTAAAACCATGTCTGGGATATGGCATTGACATCGATATGTGATCCTT
1 TGTAAAACCATATCTGGGATATGGCATTGACATCGAAATGTGATCCTT
* * *
83503152 TGTAAGACCATATCTGGGATATGGTATTGGCATCGAAATGTGAT
1 TGTAAAACCATATCTGGGATATGGCATTGACATCGAAATGTGAT
83503196 TTCGTGCAAG
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 39 1.00
ACGTcount: A:0.28, C:0.14, G:0.25, T:0.33
Consensus pattern (48 bp):
TGTAAAACCATATCTGGGATATGGCATTGACATCGAAATGTGATCCTT
Found at i:83503207 original size:48 final size:47
Alignment explanation
Indices: 83503110--83503226 Score: 128
Period size: 48 Copynumber: 2.4 Consensus size: 47
83503100 GACATGTAAA
* * *
83503110 ACCATGTCTGGGATATGGCATTGACATCGATATGTGATCCTTTGTAAG
1 ACCATATCTGGGATATGGCATTGACATCGAAATGTGAT-CTTTGCAAG
* *
83503158 ACCATATCTGGGATATGGTATTGGCATCGAAATGTGAT-TTCGTGCAAG
1 ACCATATCTGGGATATGGCATTGACATCGAAATGTGATCTT--TGCAAG
* * *
83503206 ACCATGTCTAGGACATGGCAT
1 ACCATATCTGGGATATGGCAT
83503227 CGATATAAGA
Statistics
Matches: 58, Mismatches: 9, Indels: 4
0.82 0.13 0.06
Matches are distributed among these distances:
46 2 0.03
48 56 0.97
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (47 bp):
ACCATATCTGGGATATGGCATTGACATCGAAATGTGATCTTTGCAAG
Found at i:83509238 original size:42 final size:43
Alignment explanation
Indices: 83509173--83509259 Score: 122
Period size: 42 Copynumber: 2.0 Consensus size: 43
83509163 AAATCATGCC
* *
83509173 ACTATTTTGATATTGAAAAATGATTTTCATGTTAAACATGCTG
1 ACTATGTTGATATTGAAAAATGATTTACATGTTAAACATGCTG
* * *
83509216 ACTATGTTGAT-TTTAAACATGATTTACATGTTAAGCATGCTG
1 ACTATGTTGATATTGAAAAATGATTTACATGTTAAACATGCTG
83509258 AC
1 AC
83509260 CTTGTAGATT
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
42 29 0.74
43 10 0.26
ACGTcount: A:0.33, C:0.11, G:0.15, T:0.40
Consensus pattern (43 bp):
ACTATGTTGATATTGAAAAATGATTTACATGTTAAACATGCTG
Found at i:83510887 original size:24 final size:24
Alignment explanation
Indices: 83510860--83510954 Score: 102
Period size: 24 Copynumber: 4.0 Consensus size: 24
83510850 TTTATTACAA
*
83510860 TATTGAGTGGCTAGGCCACAACGT
1 TATTGAGTGGCTTGGCCACAACGT
* * * * *
83510884 TATTAAGTGGCTTGACCATAATGC
1 TATTGAGTGGCTTGGCCACAACGT
* *
83510908 TATTGAGTGGTTTGG-CACAATGT
1 TATTGAGTGGCTTGGCCACAACGT
*
83510931 TATTGAGTGGCTTGTCCACAACGT
1 TATTGAGTGGCTTGGCCACAACGT
83510955 GAAGCTTGAT
Statistics
Matches: 56, Mismatches: 14, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
23 19 0.34
24 37 0.66
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (24 bp):
TATTGAGTGGCTTGGCCACAACGT
Found at i:83515712 original size:50 final size:50
Alignment explanation
Indices: 83515597--83516040 Score: 355
Period size: 50 Copynumber: 8.8 Consensus size: 50
83515587 GTGAGAACAT
* *** *
83515597 ATGTGTAGTACTATGTGCAGGCTACT-CTGTGTTTAAGATGGTTTTAGGTCAC
1 ATGTGTAGTACTAAGTGCAGGCTACTAC-GTGTACCAGATAG--TTAGGTCAC
* * * *
83515649 GTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGGTAGTTAGGTCGC
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCAC
* * * * *
83515699 ATGTGTAGTACTAAGTGCAGGCTACTATGCGTA-CACGACAACTTCA-ATCAC
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCA-GA-TAGTT-AGGTCAC
* * * * *
83515750 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATGGTTAGGTCAT
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCAC
* * **
83515800 ATGTGTAGTACTAAGTGTAGGCTACTACGTGTACGAGATAGTTAGGTCGT
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCAC
* * * * * * *
83515850 ATGTGTAGTACTAAGTGCAGGTTACTATGCGTACCCGACAACTTCA-ATCAC
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TAGTT-AGGTCAC
* * * * *
83515901 GTGTGTAGTGCTTAA-CGCAGGCTATTACGTGTATCAGATTA-TTAGGTCAC
1 ATGTGTAGTAC-TAAGTGCAGGCTACTACGTGTACCAGA-TAGTTAGGTCAC
* * *
83515951 GTGTGCAGTACTAAGTGCAGGCTACTACGTGTACTAGAT--TTCAGGTCAC
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT-AGGTCAC
* * **
83516000 ATGTGTAGTACTAAGTGCAGGCGACTATGCATACCAGATAG
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
83516041 CTTCGGTTAC
Statistics
Matches: 308, Mismatches: 70, Indels: 29
0.76 0.17 0.07
Matches are distributed among these distances:
48 2 0.01
49 47 0.15
50 152 0.49
51 68 0.22
52 38 0.12
53 1 0.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (50 bp):
ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCAC
Found at i:83515773 original size:101 final size:101
Alignment explanation
Indices: 83515645--83516029 Score: 297
Period size: 101 Copynumber: 3.8 Consensus size: 101
83515635 TGGTTTTAGG
* ** *
83515645 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGGTAGTTAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAGTTAGGTCACATGTGTAGTAC
83515710 TAAGTGCAGGCTACTATGCGTACACGACAACTTCAA
66 TAAGTGCAGGCTACTATGCGTACACGACAACTTCAA
* * *
83515746 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATGGTTAGGTCATATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAGTTAGGTCACATGTGTAGTAC
* * * * * *
83515811 TAAGTGTAGGCTACTACGTGTACGA-GA-TAGTT-AGG
66 TAAGTGCAGGCTACTATGCGTAC-ACGACAACTTCA-A
*** * * * * * * *
83515846 TCGTATGTGTAGTACTAAGTGCAGGTTACTATGCGTACCCGACA-ACTTCA-ATCACGTGTGTAG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CC-AAATAGTT-AGGTCACATGTGTAG
* * * * * ** *
83515909 TGCTTAA-CGCAGGCTATTACGTGTATCA-GATTA-TT-AGG
63 TAC-TAAGTGCAGGCTACTATGCGTA-CACGACAACTTCA-A
* * *
83515947 TCACGTGTGCAGTACTAAGTGCAGGCTACTACGTGTACTAGAT--TTCAGGTCACATGTGTAGTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAGTT-AGGTCACATGTGTAGTA
*
83516010 CTAAGTGCAGGCGACTATGC
65 CTAAGTGCAGGCTACTATGC
83516030 ATACCAGATA
Statistics
Matches: 226, Mismatches: 47, Indels: 24
0.76 0.16 0.08
Matches are distributed among these distances:
98 7 0.03
99 26 0.12
100 35 0.15
101 148 0.65
102 10 0.04
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (101 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAGTTAGGTCACATGTGTAGTAC
TAAGTGCAGGCTACTATGCGTACACGACAACTTCAA
Found at i:83515831 original size:26 final size:26
Alignment explanation
Indices: 83515752--83515832 Score: 73
Period size: 26 Copynumber: 3.2 Consensus size: 26
83515742 TCAATCACGT
*
83515752 GTGTAGTACTAAGTGCAGGCTACTAC
1 GTGTAGTACTAAGTGTAGGCTACTAC
* *
83515778 GTGTA-T-C-AAATGGTTAGG-T-CATAT
1 GTGTAGTACTAAGT-G-TAGGCTAC-TAC
83515802 GTGTAGTACTAAGTGTAGGCTACTAC
1 GTGTAGTACTAAGTGTAGGCTACTAC
83515828 GTGTA
1 GTGTA
83515833 CGAGATAGTT
Statistics
Matches: 42, Mismatches: 5, Indels: 16
0.67 0.08 0.25
Matches are distributed among these distances:
23 4 0.10
24 10 0.24
25 9 0.21
26 15 0.36
27 4 0.10
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.32
Consensus pattern (26 bp):
GTGTAGTACTAAGTGTAGGCTACTAC
Found at i:83515876 original size:151 final size:151
Alignment explanation
Indices: 83515598--83516029 Score: 595
Period size: 151 Copynumber: 2.9 Consensus size: 151
83515588 TGAGAACATA
* *
83515598 TGTGTAGTACTATGTGCAGGCTACT-CTGTGT-TTAAGATGGTTTTAGGTCACGTGTGTAGTACT
1 TGTGTAGTACTAAGTGCAGGCTACTAC-GTGTATCAA-ATGG--TTAGGTCACGTGTGTAGTACT
*
83515661 AAGTGTAGGCTACTACGTGTACCAGGTAGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
62 AAGTGTAGGCTACTACGTGTACCAGATAGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
83515726 TGCGTACACGACAACTTCAATCACG
127 TGCGTACACGACAACTTCAATCACG
**
83515751 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATGGTTAGGTCATATGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATGGTTAGGTCACGTGTGTAGTACTAAGT
* * *
83515816 GTAGGCTACTACGTGTACGAGATAGTTAGGTCGTATGTGTAGTACTAAGTGCAGGTTACTATGCG
66 GTAGGCTACTACGTGTACCAGATAGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCG
*
83515881 TACCCGACAACTTCAATCACG
131 TACACGACAACTTCAATCACG
* * * * ** *
83515902 TGTGTAGTGCTTAA-CGCAGGCTATTACGTGTATCAGATTATTAGGTCACGTGTGCAGTACTAAG
1 TGTGTAGTAC-TAAGTGCAGGCTACTACGTGTATCAAATGGTTAGGTCACGTGTGTAGTACTAAG
* * * *
83515966 TGCAGGCTACTACGTGTACTAGAT--TTCAGGTCACATGTGTAGTACTAAGTGCAGGCGACTATG
65 TGTAGGCTACTACGTGTACCAGATAGTT-AGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATG
83516029 C
129 C
83516030 ATACCAGATA
Statistics
Matches: 251, Mismatches: 24, Indels: 11
0.88 0.08 0.04
Matches are distributed among these distances:
149 2 0.01
150 33 0.13
151 177 0.71
152 3 0.01
153 32 0.13
154 4 0.02
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.31
Consensus pattern (151 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATGGTTAGGTCACGTGTGTAGTACTAAGT
GTAGGCTACTACGTGTACCAGATAGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCG
TACACGACAACTTCAATCACG
Found at i:83519437 original size:28 final size:28
Alignment explanation
Indices: 83519405--83519507 Score: 143
Period size: 28 Copynumber: 3.7 Consensus size: 28
83519395 ATTGCATGAC
* **
83519405 TATGAATGTGATTGGGTCTGACAGGCCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
*
83519433 TATGAAAGTGATTGGGCCTGATGGGCCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
*
83519461 TATGAATGTGATTGGGCCCGATGGGCCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
* *
83519489 TATGAATGAGATTTGGCCT
1 TATGAATGTGATTGGGCCT
83519508 AAAGGGGCCA
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 66 1.00
ACGTcount: A:0.24, C:0.15, G:0.33, T:0.28
Consensus pattern (28 bp):
TATGAATGTGATTGGGCCTGATGGGCCA
Found at i:83525799 original size:28 final size:28
Alignment explanation
Indices: 83525767--83525858 Score: 121
Period size: 28 Copynumber: 3.2 Consensus size: 28
83525757 ATTGCATAAC
*
83525767 TATGAAAGTGATTGGGCCTAATGGGCCA
1 TATGAATGTGATTGGGCCTAATGGGCCA
**
83525795 TATGAATGTGATTGGGCCCGATGGGCCA
1 TATGAATGTGATTGGGCCTAATGGGCCA
* *
83525823 TATGAATGAGATTGGGCCTAAAGGGGCCA
1 TATGAATGTGATTGGGCCT-AATGGGCCA
*
83525852 AATGAAT
1 TATGAAT
83525859 AAGTATGGAT
Statistics
Matches: 55, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
28 42 0.76
29 13 0.24
ACGTcount: A:0.29, C:0.14, G:0.33, T:0.24
Consensus pattern (28 bp):
TATGAATGTGATTGGGCCTAATGGGCCA
Found at i:83527125 original size:17 final size:18
Alignment explanation
Indices: 83527092--83527125 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
83527082 TTTAAAGAAG
83527092 GGTTTTCAATGAAAACAA
1 GGTTTTCAATGAAAACAA
83527110 GGTTTTCAAT-AAAACA
1 GGTTTTCAATGAAAACA
83527126 CTTCAATGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.44, C:0.12, G:0.15, T:0.29
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAA
Found at i:83528721 original size:40 final size:39
Alignment explanation
Indices: 83528585--83528740 Score: 170
Period size: 41 Copynumber: 3.8 Consensus size: 39
83528575 TTAATTATAT
** *
83528585 CCTAAATGGCACATACGTGCCCT-TATTTGTACATTGGTAC
1 CCTAAATTACACATACGTGCCCTGT-TTT-TACTTTGGTAC
* *
83528625 CCTTGAATTACACATACGTCGCCCTATTTTTACTTTGGTACC
1 CC-TAAATTACACATACGT-GCCCTGTTTTTACTTTGGTA-C
* *
83528667 CCTAAATTGCACATATGTGGCCCTGTTTTTACTTTGGTAC
1 CCTAAATTACACATACGT-GCCCTGTTTTTACTTTGGTAC
*
83528707 CCTAAATTACACATACGTGCCCTTGTTTGTACTT
1 CCTAAATTACACATACGTGCCC-TGTTTTTACTT
83528741 CAGTACCCCT
Statistics
Matches: 99, Mismatches: 12, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
39 4 0.04
40 29 0.29
41 54 0.55
42 11 0.11
43 1 0.01
ACGTcount: A:0.22, C:0.26, G:0.15, T:0.37
Consensus pattern (39 bp):
CCTAAATTACACATACGTGCCCTGTTTTTACTTTGGTAC
Found at i:83528747 original size:81 final size:82
Alignment explanation
Indices: 83528585--83528762 Score: 222
Period size: 81 Copynumber: 2.2 Consensus size: 82
83528575 TTAATTATAT
* *
83528585 CCTAAATGGCACATACGTGCCCTTATTTGTACATTGGTACCCTTGAATTACACATACGTCGCCCT
1 CCTAAATTGCACATACGTGCCCTTATTTGTACATTGGTACCCTTAAATTACACATACGTCGCCCT
**
83528650 ATTTTTACTTTGGTACC
66 ATTTTTACTTCAGTACC
* *
83528667 CCTAAATTGCACATATGTGGCCCTGT-TTT-TACTTTGGTACCC-TAAATTACACATACGT-GCC
1 CCTAAATTGCACATACGT-GCCCT-TATTTGTACATTGGTACCCTTAAATTACACATACGTCGCC
83528728 CT-TGTTTGTACTTCAGTACC
64 CTAT-TTT-TACTTCAGTACC
*
83528748 CCTAAAATGCACATA
1 CCTAAATTGCACATA
83528763 AATGCCCCTG
Statistics
Matches: 85, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
79 1 0.01
80 8 0.09
81 39 0.46
82 28 0.33
83 8 0.09
84 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.14, T:0.35
Consensus pattern (82 bp):
CCTAAATTGCACATACGTGCCCTTATTTGTACATTGGTACCCTTAAATTACACATACGTCGCCCT
ATTTTTACTTCAGTACC
Found at i:83528769 original size:41 final size:40
Alignment explanation
Indices: 83528585--83528803 Score: 156
Period size: 41 Copynumber: 5.4 Consensus size: 40
83528575 TTAATTATAT
* * * *
83528585 CCTAAATGGCACATACGTGCCCTTATTTGTACATT-GGTACC
1 CCTAAATTGCACATAAGTGCCC-TGTTTGTAC-TTCAGTACC
* * * * * * **
83528626 CTTGAATTACACATACGTCGCCCTATTTTTACTTTGGTACC
1 CCTAAATTGCACATAAGT-GCCCTGTTTGTACTTCAGTACC
* * **
83528667 CCTAAATTGCACATATGTGGCCCTGTTTTTACTTTGGTA-C
1 CCTAAATTGCACATAAGT-GCCCTGTTTGTACTTCAGTACC
* *
83528707 CCTAAATTACACATACGTGCCCTTGTTTGTACTTCAGTACC
1 CCTAAATTGCACATAAGTGCCC-TGTTTGTACTTCAGTACC
* * *
83528748 CCTAAAATGCACATAAATGCCCCTGGTTGTACTTCTA-TACC
1 CCTAAATTGCACATAAGTG-CCCTGTTTGTACTTC-AGTACC
*
83528789 CCTGAATTGCACATA
1 CCTAAATTGCACATA
83528804 CGTTCCCATG
Statistics
Matches: 149, Mismatches: 23, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
39 4 0.03
40 32 0.21
41 105 0.70
42 8 0.05
ACGTcount: A:0.25, C:0.27, G:0.14, T:0.34
Consensus pattern (40 bp):
CCTAAATTGCACATAAGTGCCCTGTTTGTACTTCAGTACC
Found at i:83528772 original size:81 final size:80
Alignment explanation
Indices: 83528611--83528816 Score: 218
Period size: 81 Copynumber: 2.5 Consensus size: 80
83528601 GTGCCCTTAT
* ** *
83528611 TTGTACATTGGTACCCTTGAATTACACATACGTCGCCCTAT-TTTTACTTTGGTACCCCTAAATT
1 TTGTACTTTGGTACCC-TGAATTACACATACGT-GCCCT-TGTTTTACTTCAGTACCCCTAAAAT
** * *
83528675 GCACATATGTGGCCCTGT
63 GCACATAAATGCCCCTGG
* *
83528693 TTTTACTTTGGTACCCTAAATTACACATACGTGCCCTTGTTTGTACTTCAGTACCCCTAAAATGC
1 TTGTACTTTGGTACCCTGAATTACACATACGTGCCCTTGTTT-TACTTCAGTACCCCTAAAATGC
83528758 ACATAAATGCCCCTGG
65 ACATAAATGCCCCTGG
* * * *
83528774 TTGTACTTCT-ATACCCCTGAATTGCACATACGTTCCCATGTTT
1 TTGTACTT-TGGTA-CCCTGAATTACACATACGTGCCCTTGTTT
83528817 ACACTCTGGT
Statistics
Matches: 104, Mismatches: 16, Indels: 8
0.81 0.12 0.06
Matches are distributed among these distances:
79 1 0.01
80 8 0.08
81 55 0.53
82 40 0.38
ACGTcount: A:0.23, C:0.27, G:0.14, T:0.36
Consensus pattern (80 bp):
TTGTACTTTGGTACCCTGAATTACACATACGTGCCCTTGTTTTACTTCAGTACCCCTAAAATGCA
CATAAATGCCCCTGG
Found at i:83531032 original size:40 final size:40
Alignment explanation
Indices: 83530955--83531170 Score: 269
Period size: 40 Copynumber: 5.5 Consensus size: 40
83530945 AAACCAAGTA
** *
83530955 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
83530994 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
83531034 CCTTCGGGACTTAGCCCGGTTATAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
83531074 CCTTCGTGACTTAGCCCGGATATAATAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
83531114 CCTTCAGG-CTTAGCCC-GAAATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
83531153 CCTTCGGGACTTAGCCCG
1 CCTTCGGGACTTAGCCCG
83531171 ATTATCATCC
Statistics
Matches: 156, Mismatches: 16, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
38 3 0.02
39 42 0.27
40 111 0.71
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:83539099 original size:40 final size:40
Alignment explanation
Indices: 83539039--83539249 Score: 250
Period size: 40 Copynumber: 5.3 Consensus size: 40
83539029 CCTTCGGGGT
* * *
83539039 TTAG-CCGGATATAGCT-ACTCGCTCAAATGCATTCGAGAC
1 TTAGCCCGGTTATAG-TAACTCGCACAAATGCCTTCGAGAC
*
83539078 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGTGAC
1 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGAGAC
* *
83539118 TTAGCCCGGTTATAATAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGAGAC
* * *
83539158 TTAGCCCGGATATAATAACTCGCACAATTGCCTTCGAG-C
1 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGAGAC
* * * * *
83539197 TTAACCCGG-AATTAGTCACTAGCACAAATGCCTTCGGGAC
1 TTAGCCCGGTTA-TAGTAACTCGCACAAATGCCTTCGAGAC
83539237 TTAGCCCGGTTAT
1 TTAGCCCGGTTAT
83539250 CATCCGAATT
Statistics
Matches: 149, Mismatches: 18, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
38 1 0.01
39 35 0.23
40 112 0.75
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGAGAC
Found at i:83539240 original size:119 final size:119
Alignment explanation
Indices: 83539029--83539249 Score: 295
Period size: 119 Copynumber: 1.9 Consensus size: 119
83539019 AAACCAAGTA
** * * * *
83539029 CCTTCGGGGTTTAGCCGGATATAGCTACTCGCTCAAATGCATTCGAGACTTAGCCCGGTTATAGT
1 CCTTCGGGACTTAGCCGGATATAGATACTCGCACAAATGCATTCGAGACTTAACCCGGATATAGT
* *
83539094 AACTCGCACAAATGCCTTCGTGACTTAGCCCGGTTATAATAACTCGCACAAATG
66 AACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAATAACTCGCACAAATG
* *
83539148 CCTTCGGGACTTAGCCCGGATATA-ATAACTCGCACAATTGCCTTCGAG-CTTAACCCGGA-ATT
1 CCTTCGGGACTTAG-CCGGATATAGAT-ACTCGCACAAATGCATTCGAGACTTAACCCGGATA-T
*
83539210 AGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
63 AGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
83539250 CATCCGAATT
Statistics
Matches: 88, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
118 1 0.01
119 60 0.68
120 27 0.31
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (119 bp):
CCTTCGGGACTTAGCCGGATATAGATACTCGCACAAATGCATTCGAGACTTAACCCGGATATAGT
AACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAATAACTCGCACAAATG
Found at i:83543167 original size:41 final size:42
Alignment explanation
Indices: 83543101--83543195 Score: 122
Period size: 41 Copynumber: 2.3 Consensus size: 42
83543091 CAAATCACTG
* * *
83543101 GCATTTAGCCTGCTAGGTTTTAAACCCGAGT-TCA-TTCACCA
1 GCATTTAGCCTGCTAAGCTTGAAACCCGA-TATCATTTCACCA
*
83543142 GCATTTCGCCTGCTAAGCTTGAAACCCGATATCATTTCACCA
1 GCATTTAGCCTGCTAAGCTTGAAACCCGATATCATTTCACCA
83543184 GCATTATAGCCT
1 GCATT-TAGCCT
83543196 ACTAGGCTCG
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
40 1 0.02
41 28 0.61
42 12 0.26
43 5 0.11
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.31
Consensus pattern (42 bp):
GCATTTAGCCTGCTAAGCTTGAAACCCGATATCATTTCACCA
Found at i:83555802 original size:45 final size:45
Alignment explanation
Indices: 83555707--83555803 Score: 104
Period size: 45 Copynumber: 2.2 Consensus size: 45
83555697 TACATGTAAG
* * * * ** *
83555707 CACATATATTGATGCCAACATCTCAGATGTGGTCTTAGATGAAAG
1 CACATATATCGATGCCAACATCCCAGACGTGGTCTTACACAAAAA
* * *
83555752 TACATATATCGATGCCAACGTCCCAGACGTGTTCTTACACAAAAA
1 CACATATATCGATGCCAACATCCCAGACGTGGTCTTACACAAAAA
83555797 CACATAT
1 CACATAT
83555804 CAGACTCCTA
Statistics
Matches: 41, Mismatches: 11, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (45 bp):
CACATATATCGATGCCAACATCCCAGACGTGGTCTTACACAAAAA
Found at i:83556669 original size:27 final size:27
Alignment explanation
Indices: 83556631--83556772 Score: 196
Period size: 27 Copynumber: 5.3 Consensus size: 27
83556621 TGTAGACTAG
* *
83556631 AATTACTAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCCTGATTTGTAA
83556658 AATTACCAAAATA-CCCTAGATTTGTAA
1 AATTACCAAAATACCCCT-GATTTGTAA
*
83556685 AATTACCAAAATACCCCTGATTTGTGA
1 AATTACCAAAATACCCCTGATTTGTAA
* *
83556712 AATTACCAAAATACCCTTGACTTGTAA
1 AATTACCAAAATACCCCTGATTTGTAA
* * *
83556739 AATTACCAAAGTACCCCTGATTTATAG
1 AATTACCAAAATACCCCTGATTTGTAA
83556766 AATTACC
1 AATTACC
83556773 GTTTTACCCT
Statistics
Matches: 102, Mismatches: 11, Indels: 4
0.87 0.09 0.03
Matches are distributed among these distances:
26 4 0.04
27 94 0.92
28 4 0.04
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGATTTGTAA
Found at i:83556823 original size:27 final size:27
Alignment explanation
Indices: 83556800--83556907 Score: 144
Period size: 27 Copynumber: 4.0 Consensus size: 27
83556790 CAAAATTATT
* * * *
83556800 GAAATACCCTTATAGGGTAGAATTACT
1 GAAATACCCCTGTAGGATAGAATTACC
83556827 GAAATACCCCTGTAGGATAGAATTACC
1 GAAATACCCCTGTAGGATAGAATTACC
* * * *
83556854 GAAATACCCTTGTAGGGTAGAAATATC
1 GAAATACCCCTGTAGGATAGAATTACC
83556881 GAAATACCCCTGTAGGATAGAATTACC
1 GAAATACCCCTGTAGGATAGAATTACC
83556908 AAGATGCCCT
Statistics
Matches: 69, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 69 1.00
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.25
Consensus pattern (27 bp):
GAAATACCCCTGTAGGATAGAATTACC
Found at i:83556918 original size:54 final size:54
Alignment explanation
Indices: 83556800--83556930 Score: 187
Period size: 54 Copynumber: 2.4 Consensus size: 54
83556790 CAAAATTATT
* *
83556800 GAAATACCCTTATAGGGTAGAATTACTGAAATACCCCTGTAGGATAGAATTACC
1 GAAATACCCTTGTAGGGTAGAAATACTGAAATACCCCTGTAGGATAGAATTACC
83556854 GAAATACCCTTGTAGGGTAGAAATA-TCGAAATACCCCTGTAGGATAGAATTACC
1 GAAATACCCTTGTAGGGTAGAAATACT-GAAATACCCCTGTAGGATAGAATTACC
* *
83556908 -AAGATGCCCTTGTGGGGTA-AAAT
1 GAA-ATACCCTTGTAGGGTAGAAAT
83556931 TACAATTTTT
Statistics
Matches: 71, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
53 7 0.10
54 64 0.90
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.25
Consensus pattern (54 bp):
GAAATACCCTTGTAGGGTAGAAATACTGAAATACCCCTGTAGGATAGAATTACC
Found at i:83557499 original size:22 final size:22
Alignment explanation
Indices: 83557447--83557511 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
83557437 GCCAATTATT
* *
83557447 CTGATTATGGCTTTGCGCCAAC
1 CTGATTATGGCTCTGTGCCAAC
* *
83557469 CT-ACATATGACTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
83557491 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
83557512 ATGTATTTGC
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
21 1 0.03
22 32 0.94
23 1 0.03
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.31
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:83557700 original size:27 final size:27
Alignment explanation
Indices: 83557670--83557770 Score: 105
Period size: 27 Copynumber: 3.7 Consensus size: 27
83557660 ATTCTGTTAA
* * *
83557670 GTGGCTTTTCCACATTATCTATTTCTG
1 GTGGCTATGCCACAATATCTATTTCTG
*
83557697 GTGGCTATGCCACAAATATCTA-TTCCG
1 GTGGCTATGCCAC-AATATCTATTTCTG
* *
83557724 GTGGCTCTGCCACAATATCTATATCTG
1 GTGGCTATGCCACAATATCTATTTCTG
* * *
83557751 GTGACTCTGTCACAATATCT
1 GTGGCTATGCCACAATATCT
83557771 GTTCCGACAG
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
26 8 0.13
27 48 0.76
28 7 0.11
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.37
Consensus pattern (27 bp):
GTGGCTATGCCACAATATCTATTTCTG
Found at i:83557728 original size:54 final size:53
Alignment explanation
Indices: 83557670--83557776 Score: 133
Period size: 54 Copynumber: 2.0 Consensus size: 53
83557660 ATTCTGTTAA
* * * * *
83557670 GTGGCTTTTCCACATTATCTATTTCTGGTGGCTATGCCACAAATATCTATTCCG
1 GTGGCTCTGCCACAATATCTATATCTGGTGACTATGCCAC-AATATCTATTCCG
* * *
83557724 GTGGCTCTGCCACAATATCTATATCTGGTGACTCTGTCACAATATCTGTTCCG
1 GTGGCTCTGCCACAATATCTATATCTGGTGACTATGCCACAATATCTATTCCG
83557777 ACAGCCATGT
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
53 12 0.27
54 33 0.73
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (53 bp):
GTGGCTCTGCCACAATATCTATATCTGGTGACTATGCCACAATATCTATTCCG
Found at i:83557959 original size:12 final size:12
Alignment explanation
Indices: 83557942--83557979 Score: 67
Period size: 12 Copynumber: 3.2 Consensus size: 12
83557932 ATTCGGTCAC
83557942 CTAATTTTGATT
1 CTAATTTTGATT
83557954 CTAATTTTGATT
1 CTAATTTTGATT
*
83557966 CTGATTTTGATT
1 CTAATTTTGATT
83557978 CT
1 CT
83557980 GTTACCTGAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.21, C:0.11, G:0.11, T:0.58
Consensus pattern (12 bp):
CTAATTTTGATT
Found at i:83557995 original size:25 final size:24
Alignment explanation
Indices: 83557965--83558030 Score: 78
Period size: 25 Copynumber: 2.7 Consensus size: 24
83557955 TAATTTTGAT
* *
83557965 TCTGATTTTGATTCTGTTACCTGA
1 TCTGATTCTGATTCTGTCACCTGA
* *
83557989 TACTGATTCTGATTTTGTCACCTAA
1 T-CTGATTCTGATTCTGTCACCTGA
83558014 CTCTGATTCTGATTCTG
1 -TCTGATTCTGATTCTG
83558031 ATTCTAATTC
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
24 1 0.03
25 33 0.94
26 1 0.03
ACGTcount: A:0.18, C:0.20, G:0.15, T:0.47
Consensus pattern (24 bp):
TCTGATTCTGATTCTGTCACCTGA
Found at i:83557999 original size:31 final size:31
Alignment explanation
Indices: 83557961--83558064 Score: 113
Period size: 31 Copynumber: 3.4 Consensus size: 31
83557951 ATTCTAATTT
83557961 TGATTCTGATTTTGATTCTGTTACCTGATAC
1 TGATTCTGATTTTGATTCTGTTACCTGATAC
** * *
83557992 TGATTCTGATTTTG--TCACCTAACTCTGATTC
1 TGATTCTGATTTTGATTC-TGTTAC-CTGATAC
* *
83558023 TGATTCTGATTCTAATTCTGTTACCTGATAC
1 TGATTCTGATTTTGATTCTGTTACCTGATAC
*
83558054 TAATTCTGATT
1 TGATTCTGATT
83558065 CTATCACCTA
Statistics
Matches: 58, Mismatches: 11, Indels: 8
0.75 0.14 0.10
Matches are distributed among these distances:
29 2 0.03
30 3 0.05
31 48 0.83
32 3 0.05
33 2 0.03
ACGTcount: A:0.21, C:0.18, G:0.13, T:0.47
Consensus pattern (31 bp):
TGATTCTGATTTTGATTCTGTTACCTGATAC
Found at i:83558002 original size:6 final size:6
Alignment explanation
Indices: 83557949--83558161 Score: 141
Period size: 6 Copynumber: 34.7 Consensus size: 6
83557939 CACCTAATTT
* * * *
83557949 TGATTC TAATTT TGATTC TGATTT TGATTC TG-TTACC TGATAC TGATTC
1 TGATTC TGATTC TGATTC TGATTC TGATTC TGATT--C TGATTC TGATTC
* * * * *
83557998 TGATTT TG-TCACC TAACTC TGATTC TGATTC TGATTC TAATTC TG-TTACC
1 TGATTC TGAT--TC TGATTC TGATTC TGATTC TGATTC TGATTC TGATT--C
* * * *
83558048 TGATAC TAATTC TGATTC T-ATCACC TAATTC TGATTC TGATTC TGATTC
1 TGATTC TGATTC TGATTC TGAT--TC TGATTC TGATTC TGATTC TGATTC
* * *
83558097 TGATTC TGATTC TGATTC TG-TTACC TGATTC TGATTT TGATTC TCATTT
1 TGATTC TGATTC TGATTC TGATT--C TGATTC TGATTC TGATTC TGATTC
83558146 TGATTC T-AGTTC TGAT
1 TGATTC TGA-TTC TGAT
83558162 AATGTTTCTT
Statistics
Matches: 159, Mismatches: 31, Indels: 34
0.71 0.14 0.15
Matches are distributed among these distances:
5 10 0.06
6 130 0.82
7 13 0.08
8 6 0.04
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.49
Consensus pattern (6 bp):
TGATTC
Found at i:83558002 original size:37 final size:37
Alignment explanation
Indices: 83557985--83558177 Score: 155
Period size: 37 Copynumber: 5.2 Consensus size: 37
83557975 ATTCTGTTAC
* * * *
83557985 CTGATACTGATTCTGATTTTGTCACCTAACT-CTGATT
1 CTGATTCTGATTCTGATTCTGTTACCTGA-TACTGATT
* *
83558022 CTGATTCTGATTCTAATTCTGTTACCTGATACTAATT
1 CTGATTCTGATTCTGATTCTGTTACCTGATACTGATT
* * *
83558059 CTGATTCT-ATCACCTAATTCTGATT--CTGATTCTGATT
1 CTGATTCTGAT--TCTGATTCTG-TTACCTGATACTGATT
*
83558096 CTGATTCTGATTCTGATTCTGTTACCTGATTCTGATT
1 CTGATTCTGATTCTGATTCTGTTACCTGATACTGATT
* * * * *
83558133 TTGATTCTCATTTTGATTCTAGTT--CTGATAATGTTT
1 CTGATTCTGATTCTGATTCT-GTTACCTGATACTGATT
*
83558169 CTTATTCTG
1 CTGATTCTG
83558178 TAATGGGCTA
Statistics
Matches: 128, Mismatches: 20, Indels: 17
0.78 0.12 0.10
Matches are distributed among these distances:
35 2 0.02
36 26 0.20
37 84 0.66
38 14 0.11
39 2 0.02
ACGTcount: A:0.20, C:0.19, G:0.13, T:0.48
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCTGTTACCTGATACTGATT
Found at i:83558009 original size:68 final size:66
Alignment explanation
Indices: 83557895--83558132 Score: 272
Period size: 68 Copynumber: 3.6 Consensus size: 66
83557885 TTGCATTCAC
* * * * *
83557895 ATTCTGGTTCTGATTCTGTTACCTGATACAGATTCTAATTCGGTCACCTAATTTTGATTCTAATT
1 ATTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTCACCTAATTCTGATTCT-A-T
83557960 TTG
64 TTG
* * *
83557963 ATTCTGATTTTGATTCTGTTACCTGATACTGATTCTGATTTTGTCACCTAACTCTGATTC----T
1 ATTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTCACCTAATTCTGATTCTATTT
83558024 G
66 G
* * *
83558025 ATTCTGATTCTAATTCTGTTACCTGATACTAATTCTGATTCTATCACCTAATTCTGATTCTGATT
1 ATTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTCACCTAATTCTGATTCT-ATT
83558090 CTG
65 -TG
*
83558093 ATTCTGATTCTGATTCTGATT--CTGTTACCTGATTCTGATT
1 ATTCTGATTCTGATTCTG-TTACCTGATA-CTGATTCTGATT
83558133 TTGATTCTCA
Statistics
Matches: 145, Mismatches: 17, Indels: 16
0.81 0.10 0.09
Matches are distributed among these distances:
62 56 0.39
67 5 0.03
68 82 0.57
69 2 0.01
ACGTcount: A:0.21, C:0.19, G:0.13, T:0.47
Consensus pattern (66 bp):
ATTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTCACCTAATTCTGATTCTATTT
G
Found at i:83558050 original size:25 final size:25
Alignment explanation
Indices: 83558022--83558140 Score: 152
Period size: 25 Copynumber: 4.8 Consensus size: 25
83558012 AACTCTGATT
*
83558022 CTGATTCTGATTCTAATTCTGTTAC
1 CTGATTCTGATTCTGATTCTGTTAC
* * * *
83558047 CTGATACTAATTCTGATTCTATCAC
1 CTGATTCTGATTCTGATTCTGTTAC
*
83558072 CTAATTCTGATTCTGATTCTGATT--
1 CTGATTCTGATTCTGATTCTG-TTAC
83558096 CTGATTCTGATTCTGATTCTGTTAC
1 CTGATTCTGATTCTGATTCTGTTAC
*
83558121 CTGATTCTGATTTTGATTCT
1 CTGATTCTGATTCTGATTCT
83558141 CATTTTGATT
Statistics
Matches: 79, Mismatches: 12, Indels: 6
0.81 0.12 0.06
Matches are distributed among these distances:
23 2 0.03
24 20 0.25
25 56 0.71
26 1 0.01
ACGTcount: A:0.20, C:0.19, G:0.13, T:0.48
Consensus pattern (25 bp):
CTGATTCTGATTCTGATTCTGTTAC
Found at i:83558060 original size:62 final size:62
Alignment explanation
Indices: 83557895--83558104 Score: 242
Period size: 62 Copynumber: 3.3 Consensus size: 62
83557885 TTGCATTCAC
* * ** * *
83557895 ATTCTGGTTCTGATTCTGTTACCTGATAC-AGATTCTAATTCGGTCACCTAATTTTGATTCTAAT
1 ATTCTGATTCTGATTCTGTTACCTGATACTA-ATTCTGATTCTATCACCTAACTCTGATTC----
83557959 TTTG
61 --TG
* * * *
83557963 ATTCTGATTTTGATTCTGTTACCTGATACTGATTCTGATTTTGTCACCTAACTCTGATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTAATTCTGATTCTATCACCTAACTCTGATTCTG
* *
83558025 ATTCTGATTCTAATTCTGTTACCTGATACTAATTCTGATTCTATCACCTAATTCTGATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTAATTCTGATTCTATCACCTAACTCTGATTCTG
83558087 ATTCTGATTCTGATTCTG
1 ATTCTGATTCTGATTCTG
83558105 ATTCTGATTC
Statistics
Matches: 126, Mismatches: 15, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
62 75 0.60
68 51 0.40
ACGTcount: A:0.21, C:0.19, G:0.13, T:0.46
Consensus pattern (62 bp):
ATTCTGATTCTGATTCTGTTACCTGATACTAATTCTGATTCTATCACCTAACTCTGATTCTG
Found at i:83558082 original size:31 final size:31
Alignment explanation
Indices: 83557985--83558097 Score: 106
Period size: 31 Copynumber: 3.6 Consensus size: 31
83557975 ATTCTGTTAC
* * *
83557985 CTGATACTGATTCTGATTTTGTCACCTAACT
1 CTGATACTGATTCTGATTCTATCACCTAATT
* * *
83558016 CTGATTCTGATTCTGATTCTA--ATTCT-GTT
1 CTGATACTGATTCTGATTCTATCA-CCTAATT
*
83558045 ACCTGATACTAATTCTGATTCTATCACCTAATT
1 --CTGATACTGATTCTGATTCTATCACCTAATT
*
83558078 CTGATTCTGATTCTGATTCT
1 CTGATACTGATTCTGATTCT
83558098 GATTCTGATT
Statistics
Matches: 64, Mismatches: 12, Indels: 12
0.73 0.14 0.14
Matches are distributed among these distances:
29 2 0.03
30 2 0.03
31 55 0.86
32 2 0.03
33 3 0.05
ACGTcount: A:0.22, C:0.21, G:0.12, T:0.45
Consensus pattern (31 bp):
CTGATACTGATTCTGATTCTATCACCTAATT
Found at i:83558128 original size:49 final size:48
Alignment explanation
Indices: 83558022--83558161 Score: 156
Period size: 49 Copynumber: 2.8 Consensus size: 48
83558012 AACTCTGATT
* *
83558022 CTGATTCTGATTCTAATTCTG-TTACCTGATACTAATTCTGATTCTATCAC
1 CTGATTCTGATTCTGATTCTGATT--CTGATTCT-ATTCTGATTCTATCAC
* * *
83558072 CTAATTCTGATTCTGATTCTGATTCTGATTCTGATTCTGATTCTGTTAC
1 CTGATTCTGATTCTGATTCTGATTCTGATTCT-ATTCTGATTCTATCAC
* * *
83558121 CTGATTCTGATTTTGATTCTCATTTTGATTCTAGTTCTGAT
1 CTGATTCTGATTCTGATTCTGATTCTGATTCTA-TTCTGAT
83558162 AATGTTTCTT
Statistics
Matches: 78, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
48 1 0.01
49 56 0.72
50 19 0.24
51 2 0.03
ACGTcount: A:0.20, C:0.19, G:0.13, T:0.49
Consensus pattern (48 bp):
CTGATTCTGATTCTGATTCTGATTCTGATTCTATTCTGATTCTATCAC
Found at i:83561314 original size:27 final size:26
Alignment explanation
Indices: 83561270--83561321 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
83561260 CTCGCTACAA
*
83561270 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
83561297 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
83561322 GTAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:83570858 original size:30 final size:30
Alignment explanation
Indices: 83570824--83570884 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
83570814 TCCTTAACTC
83570824 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
83570854 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
83570884 A
1 A
83570885 GGCTCGGAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:83572359 original size:67 final size:68
Alignment explanation
Indices: 83572251--83572392 Score: 187
Period size: 67 Copynumber: 2.1 Consensus size: 68
83572241 GGAGAAGCAT
* * *
83572251 TCTGGAAGCCTCACTGCAATATGGTGGCCTCGCCAC-ATATATCTGTTCTGGTGGCTTCGTCACA
1 TCTGGAAGCCTCACTGCAATATGGTGGCCTCGCCACAATATATCTGTTCTGGTGGCCTAGCCACA
83572315 ATA
66 ATA
* * * *
83572318 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATATATATCTGTTCTGGTGGCCTAGCC
1 TCTGGAAGCCTCACTGCAATATGGTGGCCTCGCCAC--A-ATATATCTGTTCTGGTGGCCTAGCC
83572383 ACAATA
63 ACAATA
83572389 TCTG
1 TCTG
83572393 TATCTGGTGA
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
67 32 0.50
71 32 0.50
ACGTcount: A:0.20, C:0.27, G:0.23, T:0.30
Consensus pattern (68 bp):
TCTGGAAGCCTCACTGCAATATGGTGGCCTCGCCACAATATATCTGTTCTGGTGGCCTAGCCACA
ATA
Found at i:83575293 original size:48 final size:48
Alignment explanation
Indices: 83575233--83575561 Score: 595
Period size: 48 Copynumber: 6.8 Consensus size: 48
83575223 TATATGTGTA
* *
83575233 TGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATG
1 TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATG
*
83575281 TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATTTATATGTG
1 TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA--TG
83575331 TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATG
1 TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATG
*
83575379 TGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATATG
1 TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATG
83575427 TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATG
1 TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATG
83575475 TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATG
1 TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATG
*
83575523 TGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAGAT
1 TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGAT
83575562 GTGTGTATAT
Statistics
Matches: 272, Mismatches: 7, Indels: 4
0.96 0.02 0.01
Matches are distributed among these distances:
48 225 0.83
50 47 0.17
ACGTcount: A:0.34, C:0.06, G:0.29, T:0.31
Consensus pattern (48 bp):
TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATG
Found at i:83575571 original size:146 final size:145
Alignment explanation
Indices: 83575233--83575561 Score: 606
Period size: 146 Copynumber: 2.3 Consensus size: 145
83575223 TATATGTGTA
*
83575233 TGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGC
1 TGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGC
*
83575298 TAGTGTGAAATATGTATGAGATATTTATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGT
66 TAGTGTGAAATATGTATGAGATATGTATA-GTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGT
83575363 ATGAGATATGTATATG
130 ATGAGATATGTATATG
83575379 TGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGC
1 TGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGC
83575444 TAGTGTGAAATATGTATGAGATATGTATA-TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
66 TAGTGTGAAATATGTATGAGATATGTATAGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
83575508 TGAGATATGTATATG
131 TGAGATATGTATATG
* *
83575523 TGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAGAT
1 TGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGAT
83575562 GTGTGTATAT
Statistics
Matches: 179, Mismatches: 4, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
144 87 0.49
146 92 0.51
ACGTcount: A:0.34, C:0.06, G:0.29, T:0.31
Consensus pattern (145 bp):
TGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGC
TAGTGTGAAATATGTATGAGATATGTATAGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
TGAGATATGTATATG
Found at i:83575752 original size:37 final size:37
Alignment explanation
Indices: 83575702--83575804 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
83575692 GGAAATATAT
*
83575702 TCCGGTTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
83575739 TCCGGGTAAGACCCGATGACTACATGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
83575776 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
83575805 GGACTATTCA
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:83576885 original size:27 final size:27
Alignment explanation
Indices: 83576863--83577005 Score: 135
Period size: 27 Copynumber: 5.3 Consensus size: 27
83576853 AGAATTACTG
*
83576863 AAATACCCTTGGTTTACAAAATTACCA
1 AAATACCCTTGGTTTATAAAATTACCA
* * * *
83576890 AAATACTCATAGTTTGTAAAATTACCA
1 AAATACCCTTGGTTTATAAAATTACCA
*
83576917 AAATA-CCTTAGGTTTGTAAAATTACCA
1 AAATACCCTT-GGTTTATAAAATTACCA
* * * *
83576944 AAATACCTTTGATTTATGAAATTACCG
1 AAATACCCTTGGTTTATAAAATTACCA
* ** *
83576971 AAATACCCTCGACTTGTAAAATTACCA
1 AAATACCCTTGGTTTATAAAATTACCA
*
83576998 AAGTACCC
1 AAATACCC
83577006 CCAATTTATA
Statistics
Matches: 94, Mismatches: 20, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
26 2 0.02
27 89 0.95
28 3 0.03
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATACCCTTGGTTTATAAAATTACCA
Found at i:83577036 original size:54 final size:54
Alignment explanation
Indices: 83576880--83577024 Score: 130
Period size: 54 Copynumber: 2.7 Consensus size: 54
83576870 CTTGGTTTAC
* ** * * * * * * **
83576880 AAAATTACCAAAATACTCATAGTTTGTAAAATTACCAAAATACCTTAGGTTTGT
1 AAAATTACCAAAATACCCCCAATTTATGAAATTACCGAAATACCCTCGACTTGT
****
83576934 AAAATTACCAAAATACCTTTGATTTATGAAATTACCGAAATACCCTCGACTTGT
1 AAAATTACCAAAATACCCCCAATTTATGAAATTACCGAAATACCCTCGACTTGT
*
83576988 AAAATTACCAAAGTACCCCCAATTTAT-AGAATTACCG
1 AAAATTACCAAAATACCCCCAATTTATGA-AATTACCG
83577025 TTTTACCCTC
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
53 1 0.01
54 72 0.99
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.30
Consensus pattern (54 bp):
AAAATTACCAAAATACCCCCAATTTATGAAATTACCGAAATACCCTCGACTTGT
Found at i:83577074 original size:27 final size:27
Alignment explanation
Indices: 83577051--83577185 Score: 173
Period size: 27 Copynumber: 5.0 Consensus size: 27
83577041 CAAAATTATT
* *
83577051 GAAATACCCTTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
*
83577078 GAAATACCCCTGTAGGGTAGAATTATC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
83577105 GAAATACCCTTGTAGGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
83577132 GAAATACCCCTGTAGGGTAGAATTGCC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
83577159 -AAGATACCCTTGTGGGGTAAAATTACC
1 GAA-ATACCCCTGTAGGGTAGAATTACC
83577186 ATTTTGCCCT
Statistics
Matches: 94, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
26 2 0.02
27 92 0.98
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.25
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACC
Found at i:83577147 original size:54 final size:54
Alignment explanation
Indices: 83577044--83577181 Score: 199
Period size: 54 Copynumber: 2.6 Consensus size: 54
83577034 CGATTTACAA
* * *
83577044 AATTATTGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAG
83577098 AATTATCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAG
* * *
83577152 AATT-GCCAAGATACCCTTGTGGGGTA-AAAT
1 AATTATCGAA-ATACCCTTGTAGGGTAGAAAT
83577182 TACCATTTTG
Statistics
Matches: 77, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
53 7 0.09
54 70 0.91
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.27
Consensus pattern (54 bp):
AATTATCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAG
Found at i:83577750 original size:22 final size:22
Alignment explanation
Indices: 83577698--83577762 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
83577688 GCCAATTATT
* *
83577698 CTGATTATGGCTTTGCGCCAAC
1 CTGATTATGGCTCTGTGCCAAC
* *
83577720 CT-ACATATGACTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
83577742 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
83577763 ATGTATTTGC
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
21 1 0.03
22 32 0.94
23 1 0.03
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.31
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:83577916 original size:216 final size:217
Alignment explanation
Indices: 83577534--83577930 Score: 559
Period size: 216 Copynumber: 1.8 Consensus size: 217
83577524 TGTTACCGAA
83577534 GGCTGTGTGACAAACGTATTTGCCTAAGGCTATGTGCCAATATATGATTATTGACGACTCTGTGT
1 GGCTGTGTGACAAACGTATTTGCCTAAGGCTATGTGCCAATATATGATTATTGACGACTCTGTGT
* * *
83577599 CGATCATGTTTACTCAAGGCTGTGTGCCGACTATATTACCGTCGCTGATGGCTATGTGCCTAACA
66 CGATCATATTTACTCAAGGCTGTGTGCCGACTATATTACCGTAGCTGATGACTATGTGCCTAACA
* *
83577664 TGATACAGCTACCGATGGCTTAAAGCCAATTATTCTGATT-A-TGGCTTTGCGCCAACCTACATA
131 TAATACAGCTACCGATGGCTTAAAGCCAAGTATTCTG-TTAAGTGGCTTTGCGCCAACCTACATA
83577727 TGACTCTGTGCCAACCTGATTAT
195 TGACTCTGTGCCAACCTGATTAT
* * *
83577750 GGCTGTGTGCCAAATGTATTTGCCTAAGGCTATGTGCCAATATATGGTTATTGACGACTCTGTGT
1 GGCTGTGTGACAAACGTATTTGCCTAAGGCTATGTGCCAATATATGATTATTGACGACTCTGTGT
* * * * *
83577815 CGATCATATTTAC-CTAGGGCTGTGTGCCGATTATGTTACTC-TAGTTGATGACTATGTGCGTAA
66 CGATCATATTTACTC-AAGGCTGTGTGCCGACTATATTAC-CGTAGCTGATGACTATGTGCCTAA
* * * *** *
83577878 CATAATGCAGTTATCGATGGCTTTGTGCCACGTATTCTGTTAAGTGGCTTTGC
129 CATAATACAGCTACCGATGGCTTAAAGCCAAGTATTCTGTTAAGTGGCTTTGC
83577931 CACATTATCT
Statistics
Matches: 157, Mismatches: 20, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
215 3 0.02
216 144 0.92
217 10 0.06
ACGTcount: A:0.23, C:0.20, G:0.23, T:0.34
Consensus pattern (217 bp):
GGCTGTGTGACAAACGTATTTGCCTAAGGCTATGTGCCAATATATGATTATTGACGACTCTGTGT
CGATCATATTTACTCAAGGCTGTGTGCCGACTATATTACCGTAGCTGATGACTATGTGCCTAACA
TAATACAGCTACCGATGGCTTAAAGCCAAGTATTCTGTTAAGTGGCTTTGCGCCAACCTACATAT
GACTCTGTGCCAACCTGATTAT
Found at i:83577951 original size:27 final size:27
Alignment explanation
Indices: 83577921--83578021 Score: 105
Period size: 27 Copynumber: 3.7 Consensus size: 27
83577911 ATTCTGTTAA
* *
83577921 GTGGCTTTGCCACATTATCTATTTCTG
1 GTGGCTATGCCACAATATCTATTTCTG
*
83577948 GTGGCTATGCCAAAAATATCTA-TTCTG
1 GTGGCTATGCC-ACAATATCTATTTCTG
* * *
83577975 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTATGCCACAATATCTATTTCTG
* * *
83578002 GTGACTCTGTCACAATATCT
1 GTGGCTATGCCACAATATCT
83578022 GTTCCGACAG
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
26 8 0.13
27 47 0.75
28 8 0.13
ACGTcount: A:0.22, C:0.23, G:0.19, T:0.37
Consensus pattern (27 bp):
GTGGCTATGCCACAATATCTATTTCTG
Found at i:83578203 original size:37 final size:37
Alignment explanation
Indices: 83578146--83578354 Score: 147
Period size: 37 Copynumber: 5.6 Consensus size: 37
83578136 TTGCATTCAC
* * *
83578146 ATTCTGGTTCTGATTTTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGATTCTGTCACCTAATACTG
* * * *
83578183 ATTTTGATTCTGGTTCTGATTTTGTTACCTAATACTG
1 ATTCTGATTCTGATTCTGATTCTGTCACCTAATACTG
* * * *
83578220 ATTCTGATTCTGATTCTGATTCTATTACTTGATACTG
1 ATTCTGATTCTGATTCTGATTCTGTCACCTAATACTG
* * * * *
83578257 ATTCTGATTCTG-TCACCTAATTCTG--ATTCTGATTCT-
1 ATTCTGATTCTGAT--TCTGATTCTGTCA-CCTAATACTG
* * **
83578293 ATTACCTGATACTGATTCTGATTCTGTCACCTGATTTTG
1 ATT--CTGATTCTGATTCTGATTCTGTCACCTAATACTG
* *
83578332 ATTCTGATTCTCATTTTGATTCT
1 ATTCTGATTCTGATTCTGATTCT
83578355 AGTTCTGCTA
Statistics
Matches: 136, Mismatches: 27, Indels: 18
0.75 0.15 0.10
Matches are distributed among these distances:
36 5 0.04
37 104 0.76
38 22 0.16
39 5 0.04
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.49
Consensus pattern (37 bp):
ATTCTGATTCTGATTCTGATTCTGTCACCTAATACTG
Found at i:83578228 original size:6 final size:6
Alignment explanation
Indices: 83578217--83578354 Score: 104
Period size: 6 Copynumber: 22.3 Consensus size: 6
83578207 TTACCTAATA
*
83578217 CTGATT CTGATT CTGATT CTGATT CT-ATT ACTTGATA CTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT -C-TGATT CTGATT CTGATT
* * *
83578266 CTG-TCAC CTAATT CTGATT CTGATT CT-ATT ACCTGATA CTGATT CTGATT
1 CTGAT--T CTGATT CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT
* * * *
83578316 CTG-TCAC CTGATT TTGATT CTGATT CTCATT TTGATT CT
1 CTGAT--T CTGATT CTGATT CTGATT CTGATT CTGATT CT
83578355 AGTTCTGCTA
Statistics
Matches: 104, Mismatches: 16, Indels: 24
0.72 0.11 0.17
Matches are distributed among these distances:
5 8 0.08
6 81 0.78
7 9 0.09
8 6 0.06
ACGTcount: A:0.20, C:0.20, G:0.13, T:0.48
Consensus pattern (6 bp):
CTGATT
Found at i:83578252 original size:25 final size:25
Alignment explanation
Indices: 83578223--83578342 Score: 159
Period size: 25 Copynumber: 4.8 Consensus size: 25
83578213 AATACTGATT
83578223 CTGATTCTGATTCTGATTCTATTAC
1 CTGATTCTGATTCTGATTCTATTAC
* * * *
83578248 TTGATACTGATTCTGATTCTGTCAC
1 CTGATTCTGATTCTGATTCTATTAC
*
83578273 CTAATTCTGATTCTGATTCTATTAC
1 CTGATTCTGATTCTGATTCTATTAC
* * *
83578298 CTGATACTGATTCTGATTCTGTCAC
1 CTGATTCTGATTCTGATTCTATTAC
*
83578323 CTGATTTTGATTCTGATTCT
1 CTGATTCTGATTCTGATTCT
83578343 CATTTTGATT
Statistics
Matches: 80, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 80 1.00
ACGTcount: A:0.20, C:0.20, G:0.13, T:0.47
Consensus pattern (25 bp):
CTGATTCTGATTCTGATTCTATTAC
Found at i:83578284 original size:50 final size:50
Alignment explanation
Indices: 83578226--83578342 Score: 207
Period size: 50 Copynumber: 2.3 Consensus size: 50
83578216 ACTGATTCTG
*
83578226 ATTCTGATTCTGATTCTATTACTTGATACTGATTCTGATTCTGTCACCTA
1 ATTCTGATTCTGATTCTATTACCTGATACTGATTCTGATTCTGTCACCTA
*
83578276 ATTCTGATTCTGATTCTATTACCTGATACTGATTCTGATTCTGTCACCTG
1 ATTCTGATTCTGATTCTATTACCTGATACTGATTCTGATTCTGTCACCTA
*
83578326 ATTTTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
83578343 CATTTTGATT
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 64 1.00
ACGTcount: A:0.21, C:0.20, G:0.13, T:0.47
Consensus pattern (50 bp):
ATTCTGATTCTGATTCTATTACCTGATACTGATTCTGATTCTGTCACCTA
Found at i:83578342 original size:31 final size:30
Alignment explanation
Indices: 83578187--83578318 Score: 110
Period size: 31 Copynumber: 4.3 Consensus size: 30
83578177 ATTCTGATTT
* * *
83578187 TGATTCTGGTTCTGATTTTGTTACCTAATAC
1 TGATTCTGATTCTGATTCTG-TACCTAATTC
*
83578218 TGATTCTGATTCTGATTCTG-ATTCT-ATTAC
1 TGATTCTGATTCTGATTCTGTA-CCTAATT-C
*
83578248 TTGATACTGATTCTGATTCTGTCACCTAATTC
1 -TGATTCTGATTCTGATTCTGT-ACCTAATTC
*
83578280 TGATTCTGATTCT-ATTACCTGATA-CTGATTC
1 TGATTCTGATTCTGATT--CTG-TACCTAATTC
83578311 TGATTCTG
1 TGATTCTG
83578319 TCACCTGATT
Statistics
Matches: 84, Mismatches: 8, Indels: 18
0.76 0.07 0.16
Matches are distributed among these distances:
29 3 0.04
30 6 0.07
31 63 0.75
32 7 0.08
33 5 0.06
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.47
Consensus pattern (30 bp):
TGATTCTGATTCTGATTCTGTACCTAATTC
Found at i:83587832 original size:13 final size:14
Alignment explanation
Indices: 83587816--83587851 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
83587806 CAATCTCATA
83587816 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
83587829 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
83587842 TCTC-ATTTCA
1 TCTCAATTTCA
83587852 TTCCAATAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:83587841 original size:18 final size:19
Alignment explanation
Indices: 83587803--83587843 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
83587793 TGGTTCATGT
83587803 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
83587822 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
83587840 TTTC
1 TTTC
83587844 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:83588036 original size:23 final size:21
Alignment explanation
Indices: 83588005--83588089 Score: 89
Period size: 21 Copynumber: 4.0 Consensus size: 21
83587995 CCTGATCAGT
83588005 ATACGACACATAAAGTGCCTG
1 ATACGACACATAAAGTGCCTG
* ** *
83588026 ATACGATACACGAGGTGCCTG
1 ATACGACACATAAAGTGCCTG
** *
83588047 ATACGACACACGAGGTGCCTG
1 ATACGACACATAAAGTGCCTG
83588068 AAATACGACACATAAAGTGCCT
1 --ATACGACACATAAAGTGCCT
83588090 AATCGATAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
21 37 0.69
23 17 0.31
ACGTcount: A:0.35, C:0.25, G:0.22, T:0.18
Consensus pattern (21 bp):
ATACGACACATAAAGTGCCTG
Found at i:83588486 original size:15 final size:15
Alignment explanation
Indices: 83588461--83588518 Score: 80
Period size: 15 Copynumber: 3.8 Consensus size: 15
83588451 TCATGTATAT
*
83588461 TATATAATTCAATTAA
1 TATA-AATTCAATCAA
83588477 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* *
83588492 AATAATTTCAATCAA
1 TATAAATTCAATCAA
83588507 TATAAATTCAAT
1 TATAAATTCAAT
83588519 AAATTCATCG
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
15 33 0.89
16 4 0.11
ACGTcount: A:0.52, C:0.10, G:0.00, T:0.38
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:83590372 original size:34 final size:33
Alignment explanation
Indices: 83590329--83590398 Score: 115
Period size: 34 Copynumber: 2.1 Consensus size: 33
83590319 AGTGGTAATA
83590329 CAGTGTGGGCCTTAGCCC-ATTACAGTACTAGTAT
1 CAGTGTGGGCCTTAGCCCAATT-CAGTA-TAGTAT
83590363 CAGTGTGGGCCTTAGCCCAATTCAGTATAGTAT
1 CAGTGTGGGCCTTAGCCCAATTCAGTATAGTAT
83590396 CAG
1 CAG
83590399 AGATGCAAAC
Statistics
Matches: 35, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
33 9 0.26
34 23 0.66
35 3 0.09
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.29
Consensus pattern (33 bp):
CAGTGTGGGCCTTAGCCCAATTCAGTATAGTAT
Found at i:83592229 original size:24 final size:24
Alignment explanation
Indices: 83592197--83592285 Score: 128
Period size: 24 Copynumber: 3.7 Consensus size: 24
83592187 TTACTCATTC
83592197 GCACACATAGTGCCGCGTTTCCTT
1 GCACACATAGTGCCGCGTTTCCTT
83592221 GCACACATAGTGCCGCGTTTCCTT
1 GCACACATAGTGCCGCGTTTCCTT
*
83592245 GCACACATAGTGCCATGTAGTTT--TT
1 GCACACATAGTGCC--G-CGTTTCCTT
83592270 GCACACATAGTGCCGC
1 GCACACATAGTGCCGC
83592286 ATAACCTCAC
Statistics
Matches: 60, Mismatches: 2, Indels: 8
0.86 0.03 0.11
Matches are distributed among these distances:
23 1 0.02
24 38 0.63
25 16 0.27
26 1 0.02
27 4 0.07
ACGTcount: A:0.20, C:0.30, G:0.21, T:0.28
Consensus pattern (24 bp):
GCACACATAGTGCCGCGTTTCCTT
Found at i:83603900 original size:50 final size:50
Alignment explanation
Indices: 83603763--83603929 Score: 194
Period size: 50 Copynumber: 3.4 Consensus size: 50
83603753 CACGCGATCA
* * * * *
83603763 ATCTTGTATATTTGGCTATAAAGGTATTCACAAATGTGATATTATATTTG
1 ATCTTGTATATTCGGCCATATAGGTATGCACATATGTGATATTATATTTG
* * *
83603813 AAT-TTGTATA-TCGGCCATATAAGTAAGCACATATGTGATGTTATATTTG
1 -ATCTTGTATATTCGGCCATATAGGTATGCACATATGTGATATTATATTTG
* * * *
83603862 ATCTTGCATATTTGGCCACATAGGTATGCATATATGTGATATTATATTTG
1 ATCTTGTATATTCGGCCATATAGGTATGCACATATGTGATATTATATTTG
*
83603912 ATTTTGTATATTCGGCCA
1 ATCTTGTATATTCGGCCA
83603930 AATGAGTGAT
Statistics
Matches: 96, Mismatches: 18, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
48 2 0.02
49 37 0.39
50 55 0.57
51 2 0.02
ACGTcount: A:0.30, C:0.11, G:0.17, T:0.42
Consensus pattern (50 bp):
ATCTTGTATATTCGGCCATATAGGTATGCACATATGTGATATTATATTTG
Found at i:83617357 original size:50 final size:50
Alignment explanation
Indices: 83617293--83617547 Score: 262
Period size: 50 Copynumber: 5.1 Consensus size: 50
83617283 TTGAATTTTT
* * * *
83617293 GGCCACATACGTATGTACATATATGATGTTATATTGGATCTTGAATATTC
1 GGCCACATAGGTATGCACATATGTGATGTTATATTGGATCTTGTATATTC
* *
83617343 GGCCACATAGGTATGTACATATGTGATGTTATATTGGATCTTGTATATTT
1 GGCCACATAGGTATGCACATATGTGATGTTATATTGGATCTTGTATATTC
* * * * * * *
83617393 GGCTATAAAGGTATGCA-AAATTATGATATTATATTTGAAT-TTGTATATTC
1 GGCCACATAGGTATGCACATA-TGTGATGTTATA-TTGGATCTTGTATATTC
** * * * * * *
83617443 ATCCATATAAGTAAGCACATATGTGATGTTATATTTGATCTTGCATATTT
1 GGCCACATAGGTATGCACATATGTGATGTTATATTGGATCTTGTATATTC
* * *
83617493 GGCCACATAGGTATGCATATATGTGATATTATATTTGATCTTGTATATTC
1 GGCCACATAGGTATGCACATATGTGATGTTATATTGGATCTTGTATATTC
83617543 GGCCA
1 GGCCA
83617548 AATGAGTGAT
Statistics
Matches: 166, Mismatches: 35, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
49 6 0.04
50 153 0.92
51 7 0.04
ACGTcount: A:0.30, C:0.11, G:0.18, T:0.40
Consensus pattern (50 bp):
GGCCACATAGGTATGCACATATGTGATGTTATATTGGATCTTGTATATTC
Found at i:83617463 original size:100 final size:100
Alignment explanation
Indices: 83617290--83617542 Score: 294
Period size: 100 Copynumber: 2.5 Consensus size: 100
83617280 TCCTTGAATT
* * * * * * * ** * *
83617290 TTTGGCCACATACGTATGTACATATATGATGTTATATTGGATCTTGAATATTCGGCCACATAGGT
1 TTTGGCCACAAAGGTATGCAAATATATGATATTATATTTGATCTTGTATATTCATCCATATAAGT
* * *
83617355 ATGTACATATGTGATGTTATATTGGATCTTGTATA
66 AAGCACATATGTGATGTTATATTGGATCTTGCATA
* *
83617390 TTTGGCTATAAAGGTATGCAAA-ATTATGATATTATATTTGAAT-TTGTATATTCATCCATATAA
1 TTTGGCCACAAAGGTATGCAAATA-TATGATATTATATTTG-ATCTTGTATATTCATCCATATAA
*
83617453 GTAAGCACATATGTGATGTTATATTTGATCTTGCATA
64 GTAAGCACATATGTGATGTTATATTGGATCTTGCATA
* * *
83617490 TTTGGCCACATAGGTATGCATATATGTGATATTATATTTGATCTTGTATATTC
1 TTTGGCCACAAAGGTATGCAAATATATGATATTATATTTGATCTTGTATATTC
83617543 GGCCAAATGA
Statistics
Matches: 127, Mismatches: 22, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
99 3 0.02
100 121 0.95
101 3 0.02
ACGTcount: A:0.30, C:0.11, G:0.17, T:0.42
Consensus pattern (100 bp):
TTTGGCCACAAAGGTATGCAAATATATGATATTATATTTGATCTTGTATATTCATCCATATAAGT
AAGCACATATGTGATGTTATATTGGATCTTGCATA
Found at i:83625431 original size:50 final size:50
Alignment explanation
Indices: 83625356--83625581 Score: 262
Period size: 50 Copynumber: 4.5 Consensus size: 50
83625346 TGAGTACACG
*
83625356 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACC-ATACAGTTAAGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAATA-AGTTAGGTCGCA
* * * * * *
83625406 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAATAACTTCGATCGCG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CAATAAGTTAGGTCGCA
* * * * *
83625457 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGAT-GGTGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCA-ATAAGTTAGGTCGCA
* *
83625507 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAAT--TTTTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACC-AATAAGTTAGGTCGCA
83625556 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
83625582 TGCGTATCAG
Statistics
Matches: 150, Mismatches: 22, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
49 32 0.21
50 74 0.49
51 41 0.27
52 3 0.02
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAATAAGTTAGGTCGCA
Found at i:83625529 original size:101 final size:99
Alignment explanation
Indices: 83625354--83625595 Score: 306
Period size: 101 Copynumber: 2.4 Consensus size: 99
83625344 TGTGAGTACA
* * * * *
83625354 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACAGTTAAGTCGCATGTGTAGTACTAA
1 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGTGAAGTCACATGTGTAGTACTAA
*
83625419 GTGCAGGCTACTATGCGTACTC-AATAACTTCGATCG
66 GTGCAGGCTACTACGCGTAC-CGAAT--CTTCGATCG
* * *
83625455 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGTCACGTGTGTAGTACTAA
1 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGTGAAGTCACATGTGTAGTACTAA
* * * *
83625520 GTGCAGGCTACTACGTGTACCGAATTTTTGGTCG
66 GTGCAGGCTACTACGCGTACCGAATCTTCGATCG
* * *
83625554 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTATCAGATAG
1 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAG
83625596 CTTCGGCTAT
Statistics
Matches: 123, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
99 44 0.36
100 1 0.01
101 78 0.63
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (99 bp):
CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGTGAAGTCACATGTGTAGTACTAA
GTGCAGGCTACTACGCGTACCGAATCTTCGATCG
Found at i:83630030 original size:39 final size:39
Alignment explanation
Indices: 83629987--83630114 Score: 184
Period size: 39 Copynumber: 3.3 Consensus size: 39
83629977 TTCCAGCGGG
* * *
83629987 TAGCCTGCGGACCTTAAGTCCGGTTATAATTCTAGCACA
1 TAGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCATA
*
83630026 TAGCCTGCGGACCTTAAGTCCGGGTATAATTCCAGCATA
1 TAGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCATA
* * *
83630065 TAGCCTGCAGGTCTTTAAGCCCGGATATAATTCCAGCATA
1 TAGCCTGC-GGACCTTAAGTCCGGATATAATTCCAGCATA
83630105 TAGCCTGCGG
1 TAGCCTGCGG
83630115 GTCTTTAAGC
Statistics
Matches: 81, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
39 46 0.57
40 35 0.43
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.27
Consensus pattern (39 bp):
TAGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCATA
Found at i:83630094 original size:40 final size:39
Alignment explanation
Indices: 83629987--83630131 Score: 182
Period size: 40 Copynumber: 3.7 Consensus size: 39
83629977 TTCCAGCGGG
* * * *
83629987 TAGCCTGCGGACCTTAAGTCCGGTTATAATTCTAGCACA
1 TAGCCTGCGGACCTTAAGCCCGGATATAATTCCAGCATA
* *
83630026 TAGCCTGCGGACCTTAAGTCCGGGTATAATTCCAGCATA
1 TAGCCTGCGGACCTTAAGCCCGGATATAATTCCAGCATA
* *
83630065 TAGCCTGCAGGTCTTTAAGCCCGGATATAATTCCAGCATA
1 TAGCCTGC-GGACCTTAAGCCCGGATATAATTCCAGCATA
* *
83630105 TAGCCTGCGGGTCTTTAAGCCCGGATA
1 TAGCCTGC-GGACCTTAAGCCCGGATA
83630132 CACATCAACT
Statistics
Matches: 97, Mismatches: 8, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
39 44 0.45
40 53 0.55
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.27
Consensus pattern (39 bp):
TAGCCTGCGGACCTTAAGCCCGGATATAATTCCAGCATA
Found at i:83637895 original size:93 final size:93
Alignment explanation
Indices: 83637782--83637953 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
83637772 GCCCATAAGT
* * *
83637782 GAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTTAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
83637847 CGAGCTCGGATGCCTAGTTATATCTCTC
66 CGAGCTCGGATGCCTAGTTATATCTCTC
* *
83637875 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
83637940 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
83637954 CAAACATCTT
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTATATCTCTC
Found at i:83637949 original size:46 final size:46
Alignment explanation
Indices: 83637774--83637949 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 46
83637764 TGTAACCCGC
* * *
83637774 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
* * * *
83637820 CCATAAGTGAACTCGGACTCAACTTAACGAGCTCGGATGCCTAGTTAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACG-CTCG-CAT
*** *
83637868 --ATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
*
83637913 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
83637950 TGCCCAAACA
Statistics
Matches: 107, Mismatches: 18, Indels: 10
0.79 0.13 0.07
Matches are distributed among these distances:
45 2 0.02
46 70 0.65
47 33 0.31
48 2 0.02
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
Found at i:83637968 original size:46 final size:45
Alignment explanation
Indices: 83637825--83637968 Score: 123
Period size: 46 Copynumber: 3.1 Consensus size: 45
83637815 CGCATCCATA
* * * *
83637825 AGTGAACTCGGACTCAACTTAACGAGCTCGGATGCCTAGTTATATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---ACATCT-T
* * * * *
83637874 --CGAACTCGGACTCAACTCAACGAGTTCGGACGCTC-GCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACAT-C-TT
83637918 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCTT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AACATCTT
83637964 AGTGA
1 AGTGA
83637969 CATGTCACTT
Statistics
Matches: 75, Mismatches: 14, Indels: 15
0.72 0.13 0.14
Matches are distributed among these distances:
43 2 0.03
44 1 0.01
45 1 0.01
46 38 0.51
47 30 0.40
48 3 0.04
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCTT
Found at i:83643594 original size:93 final size:93
Alignment explanation
Indices: 83643435--83643606 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
83643425 GCCCATAAGT
* * *
83643435 GAACTCAGAATCAACTTAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGAATCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
83643500 CGAGCTCGGATGCCTAGTTATATCTCTC
66 CGAGCTCGGATGCCTAGTTATATCTCTC
* * *
83643528 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGAATCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
83643593 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
83643607 CAAACATCCT
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCAGAATCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTATATCTCTC
Done.