Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 243 of 295
Found at i:83643602 original size:46 final size:46
Alignment explanation
Indices: 83643427--83643602 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 46
83643417 TGTAACCCGC
* * * * *
83643427 CCATAAGTGAACTCAGAATCAACTTAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
* * *
83643473 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACG-CTCG-CAT
*** *
83643521 --ATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
*
83643566 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
83643603 TGCCCAAACA
Statistics
Matches: 107, Mismatches: 18, Indels: 10
0.79 0.13 0.07
Matches are distributed among these distances:
45 2 0.02
46 69 0.64
47 34 0.32
48 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
Found at i:83643621 original size:46 final size:45
Alignment explanation
Indices: 83643478--83643621 Score: 141
Period size: 46 Copynumber: 3.1 Consensus size: 45
83643468 CGCATCCATA
* * *
83643478 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTATATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---ACATC-CT
* * * *
83643527 --CGAACTCGGACTCAACTCAACGAGTTCGGACGCTC-GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCC-T
83643570 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AACATCCT
83643617 AGTGA
1 AGTGA
83643622 CATGTCACTT
Statistics
Matches: 78, Mismatches: 11, Indels: 15
0.75 0.11 0.14
Matches are distributed among these distances:
42 1 0.01
43 4 0.05
46 37 0.47
47 31 0.40
48 5 0.06
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCCT
Found at i:83646251 original size:20 final size:20
Alignment explanation
Indices: 83646214--83646252 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
83646204 ATGTAGCATA
* *
83646214 AATGTTATTTTTAAGTTATT
1 AATGTTAATTATAAGTTATT
*
83646234 AATGTTAATTATATGTTAT
1 AATGTTAATTATAAGTTAT
83646253 GCTGATTTTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.33, C:0.00, G:0.10, T:0.56
Consensus pattern (20 bp):
AATGTTAATTATAAGTTATT
Found at i:83649350 original size:94 final size:94
Alignment explanation
Indices: 83649168--83649609 Score: 634
Period size: 94 Copynumber: 4.8 Consensus size: 94
83649158 ACTATAACCG
* * *
83649168 TATATGCTAATT-GAATTAAGTAAATTGCCTTATTATAATGAG-T--CA---ACA-TATGTGAGC
1 TATATGCT-ATTCGAAGTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGC
*
83649225 GGAATTAAACGTCACTTTGTGTGCAGATTT
65 GGAATTAAATGTCACTTTGTGTGCAGATTT
* * *
83649255 TATATGCTATTCGAAGTAAGTTAATTGCCTTATTATAATGAGTCAACATGGGCACTATGTGTGCG
1 TATATGCTATTCGAAGTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
83649320 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
* *
83649349 TATATGCTATTCGAAGTAAGTTAATTGCCTTATTATAATGAGTTAACATTGGCTCTATGTGTGCG
1 TATATGCTATTCGAAGTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
83649414 GAATTAAATGTCACTTTGTGTG-ATGATTT
66 GAATTAAATGTCACTTTGTGTGCA-GATTT
* * * *
83649443 TACATCCTATTCGAAGTAAGTAAATTACCTTATTATAATTAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTCGAAGTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
83649508 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
* *
83649537 TATATGCTATTC-AGAGTAAGTAAATTTCCTTATTATAATGAGTTAACATTGGCACTCTGTGTGC
1 TATATGCTATTCGA-AGTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGC
* *
83649601 AGATTTAAA
65 GGAATTAAA
83649610 AGTCGATGCA
Statistics
Matches: 322, Mismatches: 22, Indels: 15
0.90 0.06 0.04
Matches are distributed among these distances:
86 3 0.01
87 36 0.11
90 2 0.01
93 4 0.01
94 276 0.86
95 1 0.00
ACGTcount: A:0.31, C:0.12, G:0.19, T:0.38
Consensus pattern (94 bp):
TATATGCTATTCGAAGTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
GAATTAAATGTCACTTTGTGTGCAGATTT
Found at i:83649667 original size:24 final size:24
Alignment explanation
Indices: 83649635--83649698 Score: 85
Period size: 24 Copynumber: 2.7 Consensus size: 24
83649625 GAAAATTTCA
* *
83649635 GGCACTATGTGTGCG-GTTTAGTAT
1 GGCACTATGTGTGCGAGCTTAAT-T
83649659 GGCACTATGTGTGCGAGCTTAATT
1 GGCACTATGTGTGCGAGCTTAATT
*
83649683 AGCACTATGTGTGCGA
1 GGCACTATGTGTGCGA
83649699 ATTCGGGTGA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
24 31 0.86
25 5 0.14
ACGTcount: A:0.20, C:0.16, G:0.31, T:0.33
Consensus pattern (24 bp):
GGCACTATGTGTGCGAGCTTAATT
Found at i:83654800 original size:94 final size:94
Alignment explanation
Indices: 83654668--83654958 Score: 537
Period size: 94 Copynumber: 3.1 Consensus size: 94
83654658 TGAATCAACA
83654668 TATGTGTGCGGAATTAAATGTCACTTTGTGTGCAGATTTTATATGCTATTCGAAGTAAGTTAATT
1 TATGTGTGCGGAATTAAATGTCACTTTGTGTGCAGATTTTATATGCTATTCGAAGTAAGTTAATT
* * *
83654733 GCCATATTATAATGAGTCAACATGGGCAC
66 GCCTTATTATAATGAGTTAACATTGGCAC
83654762 TATGTGTGCGGAATTAAATGTCACTTTGTGTGCAGATTTTATATGCTATTCGAAGTAAGTTAATT
1 TATGTGTGCGGAATTAAATGTCACTTTGTGTGCAGATTTTATATGCTATTCGAAGTAAGTTAATT
*
83654827 GCCTTATTATAATTAGTTAACATTGGCAC
66 GCCTTATTATAATGAGTTAACATTGGCAC
*
83654856 TATGTGTGCGGAATTAAATGTCACTTTGTGTGCAGATTTTATATGCTATTCGAAGTAAGTAAATT
1 TATGTGTGCGGAATTAAATGTCACTTTGTGTGCAGATTTTATATGCTATTCGAAGTAAGTTAATT
83654921 GCCTTATTATAATGAGTTAACATTGGCAC
66 GCCTTATTATAATGAGTTAACATTGGCAC
83654950 TATGTGTGC
1 TATGTGTGC
83654959 ATATTTGAAT
Statistics
Matches: 191, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
94 191 1.00
ACGTcount: A:0.29, C:0.12, G:0.21, T:0.38
Consensus pattern (94 bp):
TATGTGTGCGGAATTAAATGTCACTTTGTGTGCAGATTTTATATGCTATTCGAAGTAAGTTAATT
GCCTTATTATAATGAGTTAACATTGGCAC
Found at i:83654971 original size:94 final size:94
Alignment explanation
Indices: 83654620--83654958 Score: 532
Period size: 94 Copynumber: 3.7 Consensus size: 94
83654610 ACTATAACCG
* * *
83654620 TATATGCTAATT-GAATTAAGTAAATTGCCTTATTATAATGA---ATCA---ACA-TATGTGTGC
1 TATATGCT-ATTCGAAGTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGC
83654677 GGAATTAAATGTCACTTTGTGTGCAGATTT
65 GGAATTAAATGTCACTTTGTGTGCAGATTT
* * * *
83654707 TATATGCTATTCGAAGTAAGTTAATTGCCATATTATAATGAGTCAACATGGGCACTATGTGTGCG
1 TATATGCTATTCGAAGTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
83654772 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
* *
83654801 TATATGCTATTCGAAGTAAGTTAATTGCCTTATTATAATTAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTCGAAGTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
83654866 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
83654895 TATATGCTATTCGAAGTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGC
1 TATATGCTATTCGAAGTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGC
83654959 ATATTTGAAT
Statistics
Matches: 233, Mismatches: 11, Indels: 9
0.92 0.04 0.04
Matches are distributed among these distances:
86 3 0.01
87 34 0.15
90 3 0.01
93 2 0.01
94 191 0.82
ACGTcount: A:0.31, C:0.12, G:0.19, T:0.38
Consensus pattern (94 bp):
TATATGCTATTCGAAGTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
GAATTAAATGTCACTTTGTGTGCAGATTT
Found at i:83655025 original size:24 final size:24
Alignment explanation
Indices: 83654993--83655056 Score: 85
Period size: 24 Copynumber: 2.7 Consensus size: 24
83654983 GAAAATTTCA
* *
83654993 GGCACTATGTGTGCG-GTTTAGTAT
1 GGCACTATGTGTGCGAGCTTAAT-T
83655017 GGCACTATGTGTGCGAGCTTAATT
1 GGCACTATGTGTGCGAGCTTAATT
*
83655041 AGCACTATGTGTGCGA
1 GGCACTATGTGTGCGA
83655057 ATTCGGGTGA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
24 31 0.86
25 5 0.14
ACGTcount: A:0.20, C:0.16, G:0.31, T:0.33
Consensus pattern (24 bp):
GGCACTATGTGTGCGAGCTTAATT
Found at i:83657434 original size:40 final size:40
Alignment explanation
Indices: 83657237--83657471 Score: 162
Period size: 39 Copynumber: 6.0 Consensus size: 40
83657227 ACTTGAAACC
* ** *
83657237 AATTACCAGCACA-AGCCTGCGGGAATTTAAACCCGG-TAT
1 AATT-CCAGCATATAGCCTGCGGGTCTTTAAGCCCGGATAT
* * * * *
83657276 AATACCAGC-TCGA-AGCCTACGGGACTTT-TGCCCGGACAT
1 AATTCCAGCAT--ATAGCCTGCGGGTCTTTAAGCCCGGATAT
* *** * * * *
83657315 ATTTCCAGCGCGTAGCCTGC-GGACCTTAAGTCCGGTTAT
1 AATTCCAGCATATAGCCTGCGGGTCTTTAAGCCCGGATAT
* * * * **
83657354 AATTCCAGCACATAGCCTGC-AGACCTTAAGTCTAGG-TAT
1 AATTCCAGCATATAGCCTGCGGGTCTTTAAG-CCCGGATAT
*
83657393 AATTCCAGCATATAGCCTGTGGGTCTTTAAGCCCGGATAT
1 AATTCCAGCATATAGCCTGCGGGTCTTTAAGCCCGGATAT
83657433 AATTCCAGCATATAGCCTGCGGGTCTTTAAGCCCGGATA
1 AATTCCAGCATATAGCCTGCGGGTCTTTAAGCCCGGATA
83657472 CACATCAAAT
Statistics
Matches: 155, Mismatches: 32, Indels: 17
0.76 0.16 0.08
Matches are distributed among these distances:
38 16 0.10
39 89 0.57
40 50 0.32
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
AATTCCAGCATATAGCCTGCGGGTCTTTAAGCCCGGATAT
Found at i:83673488 original size:50 final size:50
Alignment explanation
Indices: 83673413--83673649 Score: 239
Period size: 50 Copynumber: 4.7 Consensus size: 50
83673403 TGAGTACACG
* *
83673413 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCATACTGTTAAGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGACTGTTAAGTCACA
* * ** *
83673463 TGTGTAGTACTACGTGCAGGCTACTATGCGTACTCAATGACT-TCGA-TCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTAC-C-A-GACTGTTAAGTCACA
* * * * *
83673514 TGTGTAGTACTAAGTGCAAGCTACTATGTGTATCAGA-TGGTGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGACT-GTTAAGTCACA
* * * * *
83673564 TGTGTAGTACTAAATGCAGGCTACTACGTGTACCGGATTGTT-CGTCACA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGACTGTTAAGTCACA
* *
83673613 TGTGTAGTACTAAGTGCAGGCTACTATGCGTATCAGA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
83673650 TAGCTTCGGC
Statistics
Matches: 153, Mismatches: 27, Indels: 15
0.78 0.14 0.08
Matches are distributed among these distances:
47 1 0.01
48 2 0.01
49 39 0.25
50 71 0.46
51 34 0.22
52 3 0.02
53 3 0.02
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGACTGTTAAGTCACA
Found at i:83673584 original size:101 final size:97
Alignment explanation
Indices: 83673409--83673650 Score: 288
Period size: 101 Copynumber: 2.4 Consensus size: 97
83673399 ATTGTGAGTA
* * * *
83673409 CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCATACTGTTAAGTCGCATGTGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGA-TGTGAAGTCACATGTGTAGTACT
** *
83673474 ACGTGCAGGCTACTATGCGTACTC-AATGACTTCGAT
65 AAATGCAGGCTACTACGCGTAC-CGAATG--TTCG-T
* * *
83673510 CACGTGTGTAGTACTAAGTGCAAGCTACTATGTGTATCAGATGGTGAGGTCACGTGTGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGAT-GTGAAGTCACATGTGTAGTACT
* *
83673575 AAATGCAGGCTACTACGTGTACCGGATTGTTCGT
65 AAATGCAGGCTACTACGCGTACC-GAATGTTCGT
* *
83673609 CACATGTGTAGTACTAAGTGCAGGCTACTATGCGTATCAGAT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGAT
83673651 AGCTTCGGCT
Statistics
Matches: 123, Mismatches: 15, Indels: 8
0.84 0.10 0.05
Matches are distributed among these distances:
99 40 0.33
100 6 0.05
101 74 0.60
102 3 0.02
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (97 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGTGAAGTCACATGTGTAGTACTA
AATGCAGGCTACTACGCGTACCGAATGTTCGT
Found at i:83677436 original size:43 final size:45
Alignment explanation
Indices: 83677389--83677480 Score: 116
Period size: 45 Copynumber: 2.1 Consensus size: 45
83677379 GCCGATGTCA
* * *
83677389 CAGACATGGTCTTACTTG-TAAC-CACATATCAATGCCAACGTCT
1 CAGACATGGTCTTACATGAAAACACACATATCAATGCCAACGTCC
* * *
83677432 CAGACGTGGTCTTACATGAAAACACATATATCGATGCCAACGTCC
1 CAGACATGGTCTTACATGAAAACACACATATCAATGCCAACGTCC
83677477 CAGA
1 CAGA
83677481 TGTGTTCTTC
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
43 16 0.39
44 3 0.07
45 22 0.54
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.24
Consensus pattern (45 bp):
CAGACATGGTCTTACATGAAAACACACATATCAATGCCAACGTCC
Found at i:83677498 original size:45 final size:45
Alignment explanation
Indices: 83677414--83677505 Score: 130
Period size: 45 Copynumber: 2.0 Consensus size: 45
83677404 TTGTAACCAC
* *
83677414 ATATCAATGCCAACGTCTCAGACGTGGTCTTACATGAAAACACAT
1 ATATCAATGCCAACGTCCCAGACGTGGTCTTACACGAAAACACAT
* * * *
83677459 ATATCGATGCCAACGTCCCAGATGTGTTCTTCCACGAAAACACAT
1 ATATCAATGCCAACGTCCCAGACGTGGTCTTACACGAAAACACAT
83677504 AT
1 AT
83677506 CGGAATCCTA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.25
Consensus pattern (45 bp):
ATATCAATGCCAACGTCCCAGACGTGGTCTTACACGAAAACACAT
Found at i:83678663 original size:23 final size:23
Alignment explanation
Indices: 83678637--83678685 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
83678627 AAATTTACCC
*
83678637 ATGCATGAGTTTCTTTTATTTTG
1 ATGCATGAGTTGCTTTTATTTTG
83678660 ATGCATGAGTTGCTTTTATTTTG
1 ATGCATGAGTTGCTTTTATTTTG
83678683 ATG
1 ATG
83678686 GATTATGGAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.18, C:0.08, G:0.20, T:0.53
Consensus pattern (23 bp):
ATGCATGAGTTGCTTTTATTTTG
Found at i:83684958 original size:39 final size:39
Alignment explanation
Indices: 83684840--83685056 Score: 248
Period size: 40 Copynumber: 5.5 Consensus size: 39
83684830 TTGAATGCTG
* *
83684840 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGC-GAGT-ACTAAT
**
83684879 ATCCGGACTAAGAT-CCGAAGG--TTTGTGCGAGTACTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCCTTTGTGCGAGTACTAAT
83684917 TCCGGGTTAAG-CCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAG-TACTAAT
83684956 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAG-TACTAAT
* * ** *
83684996 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTTTAAAA
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGTACT-AAT
83685036 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
83685057 ATTGAATGAG
Statistics
Matches: 160, Mismatches: 9, Indels: 16
0.86 0.05 0.09
Matches are distributed among these distances:
36 7 0.04
37 12 0.08
38 15 0.09
39 27 0.17
40 98 0.61
41 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGTACTAAT
Found at i:83685080 original size:39 final size:38
Alignment explanation
Indices: 83684918--83685106 Score: 130
Period size: 40 Copynumber: 4.8 Consensus size: 38
83684908 AGTACTAATT
* ** * *
83684918 CCGGGTTAAG-CCCGAAGGCCTTTGTGCGAGATACTAATT
1 CCGGGTTAAGTCCCGAAGG-CATTGAACGAGTTACT-ATA
* ** * *
83684957 CCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAATT
1 CCGGGTTAAGTCCCGAAGG-CATTGAACGAGTTACT-ATA
** * *
83684997 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 CCGGGTTAAGTCCCGAAGGCATT-GAACGAGTTACT-ATA
*
83685036 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATGA
1 -CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTAT-A
* *
83685076 CCGGGCTATGTCCCGAAGGCACTTGAACGAG
1 CCGGGTTAAGTCCCGAAGGCA-TTGAACGAG
83685107 GAGCTATATC
Statistics
Matches: 131, Mismatches: 13, Indels: 11
0.85 0.08 0.07
Matches are distributed among these distances:
39 42 0.32
40 89 0.68
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (38 bp):
CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTATA
Found at i:83685080 original size:79 final size:80
Alignment explanation
Indices: 83684906--83685096 Score: 203
Period size: 79 Copynumber: 2.4 Consensus size: 80
83684896 AAGGTTTGTG
* * * *
83684906 CGAG-TACTAATTCCGGGTTAAG-CCCGAAGGCCTTTGTGCGAGATACTAATTCCGGGTTAAGTC
1 CGAGATACTAATACCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* **
83684969 CCGAAGGCCTTTGTG
66 CCGAAGGCCATTGAA
* **
83684984 CGAGATACTAATTCCGGGTTAAGTCCCGAAGGCATTCGTGCGAG-TTTTAAAATCCGGGTTAAGT
1 CGAGATACTAATACCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACT-AAATCCGGGTTAAGT
83685048 CCCGAAGG-CATTGAA
65 CCCGAAGGCCATTGAA
* * * *
83685063 TGAGTTACT-ATGACCGGGCTATGTCCCGAAGGCA
1 CGAGATACTAAT-ACCGGGTTAAGTCCCGAAGGCA
83685097 CTTGAACGAG
Statistics
Matches: 96, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
78 6 0.06
79 50 0.52
80 40 0.42
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
CGAGATACTAATACCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
CCGAAGGCCATTGAA
Found at i:83692837 original size:41 final size:39
Alignment explanation
Indices: 83692753--83692941 Score: 197
Period size: 38 Copynumber: 4.8 Consensus size: 39
83692743 ATTGATGCTG
*
83692753 TCCGGGCTAAGTCCGAAGG-CTTTGTGCTA-AGTGACT-AT
1 TCCGGGCTAAGTCCGAAGGCCTTTGTGCGAGA-T-ACTAAT
* *
83692791 ATCCGGACTAAGATCCAAAGGCCTTTGTGCGAAGATACTAAT
1 -TCCGGGCTAAG-TCCGAAGGCCTTTGTGCG-AGATACTAAT
* * *
83692833 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTATT
1 TCCGGGCTAAG-TCCGAAGGCCTTTGTGCGAGATACTAAT
* *
83692873 TCCGGGTTAAGCCCG-AGGCCTTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCGAAGGCCTTTGTGCGAGATACTAAT
* * *
83692911 TCCGGGTTAAGTCCGAAGGCGTTCGTGCGAG
1 TCCGGGCTAAGTCCGAAGGCCTTTGTGCGAG
83692942 TTTTAAAATC
Statistics
Matches: 131, Mismatches: 13, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
38 36 0.27
39 27 0.21
40 27 0.21
41 36 0.27
42 4 0.03
43 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCCTTTGTGCGAGATACTAAT
Found at i:83692901 original size:38 final size:39
Alignment explanation
Indices: 83692808--83692970 Score: 213
Period size: 38 Copynumber: 4.1 Consensus size: 39
83692798 CTAAGATCCA
83692808 AAGGCCTTTGTGCGAAGATACTAATTCCGGGTTAAGCCCCG
1 AAGGCCTTTGTGCG-AGATACTAATTCCGGGTTAAG-CCCG
*
83692849 AAGGCCTTTGTGCGAGATACTATTTCCGGGTTAAGCCCG
1 AAGGCCTTTGTGCGAGATACTAATTCCGGGTTAAGCCCG
*
83692888 -AGGCCTTTGTGCGAGATACTAATTCCGGGTTAAGTCCG
1 AAGGCCTTTGTGCGAGATACTAATTCCGGGTTAAGCCCG
* * ** *
83692926 AAGGCGTTCGTGCGAG-TTTTAAAATCCGGGTTAAGTCCCG
1 AAGGCCTTTGTGCGAGATACT-AATTCCGGGTTAAG-CCCG
83692966 AAGGC
1 AAGGC
83692971 ATTGAATGAG
Statistics
Matches: 110, Mismatches: 9, Indels: 7
0.87 0.07 0.06
Matches are distributed among these distances:
38 38 0.35
39 30 0.27
40 28 0.25
41 14 0.13
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (39 bp):
AAGGCCTTTGTGCGAGATACTAATTCCGGGTTAAGCCCG
Found at i:83692986 original size:78 final size:78
Alignment explanation
Indices: 83692823--83692986 Score: 172
Period size: 78 Copynumber: 2.1 Consensus size: 78
83692813 CTTTGTGCGA
* **
83692823 AGATACTAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTATTTCCGGGTTAAGCCCG
1 AGATACTAATTCCGGGTTAAGCCCCGAAGGCCTTCGTGCGAGATACTAAATCCGGGTTAAGCCCG
* **
83692888 AGGCCTTTGTGCG
66 AGGCCATTGAACG
* * **
83692901 AGATACTAATTCCGGGTTAAG-TCCGAAGGCGTTCGTGCGAG-TTTTAAAATCCGGGTTAAGTCC
1 AGATACTAATTCCGGGTTAAGCCCCGAAGGCCTTCGTGCGAGATACT-AAATCCGGGTTAAG-CC
*
83692964 CGAAGG-CATTGAATG
64 CG-AGGCCATTGAACG
*
83692979 AGTTACTA
1 AGATACTA
83692987 TGACCGGGCT
Statistics
Matches: 71, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
76 2 0.03
77 29 0.41
78 37 0.52
79 3 0.04
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (78 bp):
AGATACTAATTCCGGGTTAAGCCCCGAAGGCCTTCGTGCGAGATACTAAATCCGGGTTAAGCCCG
AGGCCATTGAACG
Found at i:83697370 original size:50 final size:49
Alignment explanation
Indices: 83697295--83697479 Score: 194
Period size: 50 Copynumber: 3.7 Consensus size: 49
83697285 GTAAATACAC
* * *
83697295 GTGTAGTACTAAGTGTAGGCTACTATGTGTATCATACGGTTAAGTCGCAT
1 GTGTAGTACTAAGTGCAGGCTACTATGTGTATCATAC-GTTAAGTCACGT
* *
83697345 GTGTAGTACTAAGTGTAGGCTACTATGTGTACTCAATGAC-TT-CGATCACGT
1 GTGTAGTACTAAGTGCAGGCTACTATGTGTA-TC-AT-ACGTTAAG-TCACGT
* * * * * *
83697396 GTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATGATGAGGTCACGT
1 GTGTAGTACTAAGTGCAGGCTACTATGTGTATCATACG-TTAAGTCACGT
*
83697446 GTGTAGTACTAAGTGCAGGCTACTATGCGTATCA
1 GTGTAGTACTAAGTGCAGGCTACTATGTGTATCA
83697480 GATAGCTTCG
Statistics
Matches: 115, Mismatches: 13, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
48 1 0.01
49 1 0.01
50 71 0.62
51 38 0.33
52 2 0.02
53 2 0.02
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (49 bp):
GTGTAGTACTAAGTGCAGGCTACTATGTGTATCATACGTTAAGTCACGT
Found at i:83697489 original size:101 final size:101
Alignment explanation
Indices: 83697295--83697476 Score: 256
Period size: 101 Copynumber: 1.8 Consensus size: 101
83697285 GTAAATACAC
* * * * * *
83697295 GTGTAGTACTAAGTGTAGGCTACTATGTGTATCATACGGTTAAGTCGCATGTGTAGTACTAAGTG
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGACGATGAAGTCACATGTGTAGTACTAAGTG
* *
83697360 TAGGCTACTATGTGTACTCAATGACTTCGATCACGT
66 CAGGCTACTATGCGTACTCAATGACTTCGATCACGT
* * * *
83697396 GTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATGATGAGGTCACGTGTGTAGTACTAAGTG
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGACGATGAAGTCACATGTGTAGTACTAAGTG
83697461 CAGGCTACTATGCGTA
66 CAGGCTACTATGCGTA
83697477 TCAGATAGCT
Statistics
Matches: 69, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
101 69 1.00
ACGTcount: A:0.26, C:0.15, G:0.27, T:0.32
Consensus pattern (101 bp):
GTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGACGATGAAGTCACATGTGTAGTACTAAGTG
CAGGCTACTATGCGTACTCAATGACTTCGATCACGT
Found at i:83701039 original size:31 final size:31
Alignment explanation
Indices: 83701001--83701060 Score: 120
Period size: 31 Copynumber: 1.9 Consensus size: 31
83700991 ATGGGAAATA
83701001 ACCTATCATGCATGAAACCAATGATATGATG
1 ACCTATCATGCATGAAACCAATGATATGATG
83701032 ACCTATCATGCATGAAACCAATGATATGA
1 ACCTATCATGCATGAAACCAATGATATGA
83701061 GGTTTTCATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.40, C:0.20, G:0.15, T:0.25
Consensus pattern (31 bp):
ACCTATCATGCATGAAACCAATGATATGATG
Found at i:83701046 original size:17 final size:16
Alignment explanation
Indices: 83701000--83701050 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
83700990 AATGGGAAAT
83701000 AACCTATCATGCATGA
1 AACCTATCATGCATGA
* *
83701016 AACCAATGAT--ATGA
1 AACCTATCATGCATGA
*
83701030 TGACCTATCATGCATGA
1 -AACCTATCATGCATGA
83701047 AACC
1 AACC
83701051 AATGATATGA
Statistics
Matches: 26, Mismatches: 6, Indels: 6
0.68 0.16 0.16
Matches are distributed among these distances:
14 4 0.15
15 7 0.27
16 11 0.42
17 4 0.15
ACGTcount: A:0.39, C:0.24, G:0.14, T:0.24
Consensus pattern (16 bp):
AACCTATCATGCATGA
Found at i:83701723 original size:15 final size:14
Alignment explanation
Indices: 83701699--83701728 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
83701689 AGGTGAGGGG
83701699 TGTTACCCAAAACA
1 TGTTACCCAAAACA
83701713 TGTTAACCCAAAACA
1 TGTT-ACCCAAAACA
83701728 T
1 T
83701729 ATCTTTCATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.43, C:0.27, G:0.07, T:0.23
Consensus pattern (14 bp):
TGTTACCCAAAACA
Found at i:83701789 original size:24 final size:25
Alignment explanation
Indices: 83701756--83701802 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
83701746 AACTAGCATC
*
83701756 ACATAGCTC-AAATATTCATCAATG
1 ACATAACTCAAAATATTCATCAATG
83701780 ACATAACTCAAAATATTCATCAA
1 ACATAACTCAAAATATTCATCAA
83701803 AATAAAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 8 0.38
25 13 0.62
ACGTcount: A:0.47, C:0.21, G:0.04, T:0.28
Consensus pattern (25 bp):
ACATAACTCAAAATATTCATCAATG
Found at i:83702025 original size:25 final size:26
Alignment explanation
Indices: 83701997--83702051 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 26
83701987 TTAATTTATG
83701997 TTATATT-ATAACATATATTAA-CATA
1 TTATATTAATAACATAT-TTAACCATA
* *
83702022 TTAT-TTAATTACATATTTAACCTTA
1 TTATATTAATAACATATTTAACCATA
83702047 TTATA
1 TTATA
83702052 AAATATGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
24 6 0.24
25 19 0.76
ACGTcount: A:0.42, C:0.09, G:0.00, T:0.49
Consensus pattern (26 bp):
TTATATTAATAACATATTTAACCATA
Found at i:83707674 original size:55 final size:55
Alignment explanation
Indices: 83707614--83707723 Score: 211
Period size: 55 Copynumber: 2.0 Consensus size: 55
83707604 TAAAAGTGTA
*
83707614 AATCTATGGGTTTTATTGTGAATTGTTGGTAATAATGGATTGTTTCTAGGTCCTT
1 AATCTATGGGTTTTATTGTGAATTGTTGGTAATAATGGATTGTTTCAAGGTCCTT
83707669 AATCTATGGGTTTTATTGTGAATTGTTGGTAATAATGGATTGTTTCAAGGTCCTT
1 AATCTATGGGTTTTATTGTGAATTGTTGGTAATAATGGATTGTTTCAAGGTCCTT
83707724 TATAACATTG
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 54 1.00
ACGTcount: A:0.23, C:0.07, G:0.24, T:0.46
Consensus pattern (55 bp):
AATCTATGGGTTTTATTGTGAATTGTTGGTAATAATGGATTGTTTCAAGGTCCTT
Found at i:83711410 original size:20 final size:20
Alignment explanation
Indices: 83711373--83711412 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
83711363 ATCTCAAACC
83711373 ACATAGTTCATATACATTTA
1 ACATAGTTCATATACATTTA
* * *
83711393 ACATATTTCCTATTCATTTA
1 ACATAGTTCATATACATTTA
83711413 CACTATAAAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.35, C:0.17, G:0.03, T:0.45
Consensus pattern (20 bp):
ACATAGTTCATATACATTTA
Found at i:83718731 original size:47 final size:47
Alignment explanation
Indices: 83718653--83719197 Score: 865
Period size: 47 Copynumber: 11.6 Consensus size: 47
83718643 CCCTTCGGGA
* * * * * *
83718653 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
83718700 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
83718747 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
83718794 CTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
83718841 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
83718890 CTTATCACATATATACACTTTCACATTCATCACATCGACTATTGGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
83718937 CTTATCACATATATACACTTTCACATTCATCACATCGCCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
83718984 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
83719031 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83719078 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83719125 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
83719172 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
83719198 CACAATTATC
Statistics
Matches: 460, Mismatches: 36, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
47 416 0.90
49 44 0.10
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:83723883 original size:43 final size:43
Alignment explanation
Indices: 83723820--83723960 Score: 135
Period size: 44 Copynumber: 3.3 Consensus size: 43
83723810 TCCTAGATGT
* * * *
83723820 GGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAAATAA
1 GGTCTTACACGAAATAAAATATCGATGCCACTGTCCCAAACAA
*
83723863 GGTCTTACACGAAATAAAATA-CGATGCCAAC-GTCCCAAACAT
1 GGTCTTACACGAAATAAAATATCGATGCC-ACTGTCCCAAACAA
* * * * **
83723905 GGTCTTACACGTAAATCATAA-GTCGATGCCAATGTCCCAGACGT
1 GGTCTTACACG-AAAT-AAAATATCGATGCCACTGTCCCAAACAA
83723949 GGTCTTACACGA
1 GGTCTTACACGA
83723961 TAACACATAT
Statistics
Matches: 83, Mismatches: 10, Indels: 10
0.81 0.10 0.10
Matches are distributed among these distances:
42 27 0.33
43 26 0.31
44 30 0.36
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (43 bp):
GGTCTTACACGAAATAAAATATCGATGCCACTGTCCCAAACAA
Found at i:83723943 original size:44 final size:43
Alignment explanation
Indices: 83723819--83723959 Score: 162
Period size: 42 Copynumber: 3.3 Consensus size: 43
83723809 GTCCTAGATG
* * *
83723819 TGGTCTTACATGT-AATCAAATATCGATGCCACTGTCCCAAATA
1 TGGTCTTACACGTAAATCAAA-ATCGATGCCAATGTCCCAAACA
* *
83723862 AGGTCTTACACG-AAAT-AAAATACGATGCCAACGTCCCAAACA
1 TGGTCTTACACGTAAATCAAAAT-CGATGCCAATGTCCCAAACA
* * *
83723904 TGGTCTTACACGTAAATCATAAGTCGATGCCAATGTCCCAGACG
1 TGGTCTTACACGTAAATCA-AAATCGATGCCAATGTCCCAAACA
83723948 TGGTCTTACACG
1 TGGTCTTACACG
83723960 ATAACACATA
Statistics
Matches: 83, Mismatches: 10, Indels: 9
0.81 0.10 0.09
Matches are distributed among these distances:
41 2 0.02
42 31 0.37
43 17 0.20
44 30 0.36
45 3 0.04
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (43 bp):
TGGTCTTACACGTAAATCAAAATCGATGCCAATGTCCCAAACA
Found at i:83727125 original size:29 final size:29
Alignment explanation
Indices: 83727092--83727336 Score: 142
Period size: 29 Copynumber: 8.4 Consensus size: 29
83727082 ATCGGTGATC
83727092 ATCGAATATGAAAAGGGATGGTGACGACT
1 ATCGAATATGAAAAGGGATGGTGACGACT
* * *
83727121 ATCGAATATGAAAAGGGATAGCT-TCGGCT
1 ATCGAATATGAAAAGGGAT-GGTGACGACT
* * * *
83727150 TTCGATTATGAAAAGGGATGGTGACGCCC
1 ATCGAATATGAAAAGGGATGGTGACGACT
* * *
83727179 ATCGAATATGAGAAGGGATAGCT-TC-ATCT
1 ATCGAATATGAAAAGGGAT-GGTGACGA-CT
* * ** *
83727208 ATC-AGATATGAAAAGAGATAGCT-TTGGCT
1 ATCGA-ATATGAAAAGGGAT-GGTGACGACT
** * * * *
83727237 ATTTATTATGAAAAGTGATGGTGACAACC
1 ATCGAATATGAAAAGGGATGGTGACGACT
83727266 ATC-AACTATGAAAAGGGATGGTGACGACT
1 ATCGAA-TATGAAAAGGGATGGTGACGACT
* * ** * *
83727295 ATCGATTAATGAAAAGAGATGGTTTCAACC
1 ATCGAAT-ATGAAAAGGGATGGTGACGACT
83727325 ATCGAATATGAA
1 ATCGAATATGAA
83727337 CATGGACAGT
Statistics
Matches: 164, Mismatches: 41, Indels: 22
0.72 0.18 0.10
Matches are distributed among these distances:
28 6 0.04
29 129 0.79
30 29 0.18
ACGTcount: A:0.37, C:0.13, G:0.25, T:0.25
Consensus pattern (29 bp):
ATCGAATATGAAAAGGGATGGTGACGACT
Found at i:83727188 original size:58 final size:58
Alignment explanation
Indices: 83727093--83727203 Score: 186
Period size: 58 Copynumber: 1.9 Consensus size: 58
83727083 TCGGTGATCA
*
83727093 TCGAATATGAAAAGGGATGGTGACGACTATCGAATATGAAAAGGGATAGCTTCGGCTT
1 TCGAATATGAAAAGGGATGGTGACGACCATCGAATATGAAAAGGGATAGCTTCGGCTT
* * *
83727151 TCGATTATGAAAAGGGATGGTGACGCCCATCGAATATGAGAAGGGATAGCTTC
1 TCGAATATGAAAAGGGATGGTGACGACCATCGAATATGAAAAGGGATAGCTTC
83727204 ATCTATCAGA
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
58 49 1.00
ACGTcount: A:0.33, C:0.14, G:0.30, T:0.23
Consensus pattern (58 bp):
TCGAATATGAAAAGGGATGGTGACGACCATCGAATATGAAAAGGGATAGCTTCGGCTT
Found at i:83727218 original size:58 final size:57
Alignment explanation
Indices: 83727092--83727222 Score: 181
Period size: 58 Copynumber: 2.2 Consensus size: 57
83727082 ATCGGTGATC
* *
83727092 ATCGAATATGAAAAGGGATGGTGACGACTATCGAATATGAAAAGGGATAGCTTCGGCT
1 ATCG-ATATGAAAAGGGATGGTGACGACCATCGAATATGAAAAGGGATAGCTTCAGCT
* * * *
83727150 TTCGATTATGAAAAGGGATGGTGACGCCCATCGAATATGAGAAGGGATAGCTTCATCT
1 ATCGA-TATGAAAAGGGATGGTGACGACCATCGAATATGAAAAGGGATAGCTTCAGCT
83727208 ATCAGATATGAAAAG
1 ATC-GATATGAAAAG
83727223 AGATAGCTTT
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
57 1 0.02
58 61 0.95
59 2 0.03
ACGTcount: A:0.36, C:0.13, G:0.27, T:0.24
Consensus pattern (57 bp):
ATCGATATGAAAAGGGATGGTGACGACCATCGAATATGAAAAGGGATAGCTTCAGCT
Found at i:83727297 original size:87 final size:86
Alignment explanation
Indices: 83727091--83727314 Score: 267
Period size: 87 Copynumber: 2.6 Consensus size: 86
83727081 TATCGGTGAT
*
83727091 CATCGAATATGAAAAGGGATGGTGACGACTATCGAATATGAAAAGGGATAGCTTCGGCTTTCGAT
1 CATCGAATATGAAAAGGGATGGTGACGACTATCG-ATATGAAAAGAGATAGCTTCGGCTTTCGAT
**
83727156 TATGAAAAGGGATGGTGACGCC
65 TATGAAAAGGGATGGTGACAAC
* * * *
83727178 CATCGAATATGAGAAGGGATAGCT-TC-ATCTATCAGATATGAAAAGAGATAGCTTTGGCTATT-
1 CATCGAATATGAAAAGGGAT-GGTGACGA-CTATC-GATATGAAAAGAGATAGCTTCGGCT-TTC
* *
83727240 TATTATGAAAAGTGATGGTGACAAC
62 GATTATGAAAAGGGATGGTGACAAC
83727265 CATC-AACTATGAAAAGGGATGGTGACGACTATCGATTAATGAAAAGAGAT
1 CATCGAA-TATGAAAAGGGATGGTGACGACTATCGA-T-ATGAAAAGAGAT
83727315 GGTTTCAACC
Statistics
Matches: 116, Mismatches: 12, Indels: 17
0.80 0.08 0.12
Matches are distributed among these distances:
86 7 0.06
87 91 0.78
88 18 0.16
ACGTcount: A:0.37, C:0.12, G:0.26, T:0.25
Consensus pattern (86 bp):
CATCGAATATGAAAAGGGATGGTGACGACTATCGATATGAAAAGAGATAGCTTCGGCTTTCGATT
ATGAAAAGGGATGGTGACAAC
Found at i:83728277 original size:37 final size:37
Alignment explanation
Indices: 83728227--83728339 Score: 199
Period size: 37 Copynumber: 3.1 Consensus size: 37
83728217 CTTTAGCTCA
* *
83728227 GACAAAATCTCCACACGAAGTTATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
83728264 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
*
83728301 GACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
83728338 GA
1 GA
83728340 ATATATTTCC
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 73 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.22
Consensus pattern (37 bp):
GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
Found at i:83728540 original size:48 final size:48
Alignment explanation
Indices: 83728486--83728620 Score: 216
Period size: 48 Copynumber: 2.8 Consensus size: 48
83728476 GCACATCGCC
*
83728486 TACATATTTCACACTAGCCATTCGACTTTACCACATATACATACCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATACCTCA
* *
83728534 TACATATTTCGCACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATACCTCA
* * *
83728582 TACATATTTCACATTAGCCATTCGGCCTTATCACATATA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATA
83728621 TGCATGTTCA
Statistics
Matches: 80, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 80 1.00
ACGTcount: A:0.31, C:0.29, G:0.07, T:0.33
Consensus pattern (48 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATACCTCA
Found at i:83728655 original size:47 final size:47
Alignment explanation
Indices: 83728590--83728877 Score: 441
Period size: 47 Copynumber: 6.1 Consensus size: 47
83728580 CATACATATT
* * * *
83728590 TCACATTAGCCATTCGGCCTTATCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
*
83728637 TCATATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
* * * * *
83728684 TCACATTGGCCATTCGGCCTTCTAACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
* *
83728731 TCATATTGGCCATTCGGTCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
*
83728778 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACAGTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
* *
83728825 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
83728872 TCACAT
1 TCACAT
83728878 AAAATCCTAA
Statistics
Matches: 217, Mismatches: 24, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 217 1.00
ACGTcount: A:0.26, C:0.28, G:0.12, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
Found at i:83733292 original size:46 final size:44
Alignment explanation
Indices: 83733275--83733533 Score: 190
Period size: 37 Copynumber: 6.3 Consensus size: 44
83733265 GACAAGTGGA
* * * * *
83733275 AAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAA
1 AAGTGATAAGTGATAGCTT-AGCTACACTTATCTGATCAAGAGAC
* *
83733320 AAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC
1 AAGTGATAAGTGATAGCTT-AGCTACACTTATCTGATCAAGAGAC
83733365 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGAC
1 -AAGTGATAAGTGATAGC-TTAGCTACACTTATCTGATCAAGAGAC
* *
83733411 AAAGTGATAA--G-T-G----GCTACACTTATCTGATCAAGAAAA
1 -AAGTGATAAGTGATAGCTTAGCTACACTTATCTGATCAAGAGAC
*
83733448 AAGTGATAA--G-T-G----GCTACACTTATCTGATCAAGAAAC
1 AAGTGATAAGTGATAGCTTAGCTACACTTATCTGATCAAGAGAC
*
83733484 AAAGTGAT-AG-G-T-G----GCTACACTTATCTGATC-AGGGAC
1 -AAGTGATAAGTGATAGCTTAGCTACACTTATCTGATCAAGAGAC
83733520 AAGTGATAAGTGAT
1 AAGTGATAAGTGAT
83733534 CATACGTAAG
Statistics
Matches: 197, Mismatches: 10, Indels: 21
0.86 0.04 0.09
Matches are distributed among these distances:
35 7 0.04
36 42 0.21
37 50 0.25
38 1 0.01
42 1 0.01
43 1 0.01
44 1 0.01
45 42 0.21
46 50 0.25
47 2 0.01
ACGTcount: A:0.37, C:0.14, G:0.22, T:0.27
Consensus pattern (44 bp):
AAGTGATAAGTGATAGCTTAGCTACACTTATCTGATCAAGAGAC
Found at i:83733293 original size:52 final size:47
Alignment explanation
Indices: 83733208--83733423 Score: 244
Period size: 46 Copynumber: 4.6 Consensus size: 47
83733198 TTTGAGTACT
* * * *
83733208 TCTGATCAAGTGA-TAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGAGACAAAAGTGATAAGTGATAGCTTCAGCTACACTTA
* * * *
83733254 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTA
1 TCTGATCAAGAGAC-A----AAAGTGATAAGTGATAGCTTCAGCTACACTTA
* * *
83733306 TCTGATCAAGTG--AAAAGTGATAAGTGATAGCTTCGGCTATACTTA
1 TCTGATCAAGAGACAAAAGTGATAAGTGATAGCTTCAGCTACACTTA
*
83733351 TCTGATCAAGAGAC-AAAGTGATAAGTGATAGCTTTAGCTACACTTA
1 TCTGATCAAGAGACAAAAGTGATAAGTGATAGCTTCAGCTACACTTA
83733397 TCTGATCAAGAGAC-AAAGTGATAAGTG
1 TCTGATCAAGAGACAAAAGTGATAAGTG
83733424 GCTACACTTA
Statistics
Matches: 151, Mismatches: 11, Indels: 16
0.85 0.06 0.09
Matches are distributed among these distances:
45 42 0.28
46 69 0.46
49 1 0.01
52 39 0.26
ACGTcount: A:0.35, C:0.13, G:0.22, T:0.29
Consensus pattern (47 bp):
TCTGATCAAGAGACAAAAGTGATAAGTGATAGCTTCAGCTACACTTA
Found at i:83733316 original size:45 final size:46
Alignment explanation
Indices: 83733274--83733423 Score: 248
Period size: 46 Copynumber: 3.3 Consensus size: 46
83733264 TGACAAGTGG
* *
83733274 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGA-
1 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC
83733319 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC
1 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC
** *
83733365 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGAC
1 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC
83733411 AAAGTGATAAGTG
1 AAAGTGATAAGTG
83733424 GCTACACTTA
Statistics
Matches: 99, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
45 43 0.43
46 56 0.57
ACGTcount: A:0.37, C:0.13, G:0.21, T:0.29
Consensus pattern (46 bp):
AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC
Found at i:83733431 original size:37 final size:37
Alignment explanation
Indices: 83733387--83733531 Score: 233
Period size: 37 Copynumber: 4.0 Consensus size: 37
83733377 GATAGCTTTA
83733387 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
*
83733424 GCTACACTTATCTGATCAAGA-AAAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
* *
83733460 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
*
83733497 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
83733532 ATCATACGTA
Statistics
Matches: 101, Mismatches: 6, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
35 11 0.11
36 39 0.39
37 51 0.50
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
Found at i:83733498 original size:73 final size:72
Alignment explanation
Indices: 83733387--83733531 Score: 236
Period size: 73 Copynumber: 2.0 Consensus size: 72
83733377 GATAGCTTTA
*
83733387 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTGGCTACACTTATCTGATCAAGAAAAAAGT
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTATCTGATC-AGAAAAAAGT
83733452 GATAAGTG
65 GATAAGTG
* ** *
83733460 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTGGCTACACTTATCTGATCAGGGACAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTATCTGATCAGAAAAAAGTG
83733525 ATAAGTG
66 ATAAGTG
83733532 ATCATACGTA
Statistics
Matches: 67, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
72 15 0.22
73 52 0.78
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (72 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTATCTGATCAGAAAAAAGTG
ATAAGTG
Found at i:83734859 original size:48 final size:49
Alignment explanation
Indices: 83734786--83734928 Score: 218
Period size: 48 Copynumber: 2.9 Consensus size: 49
83734776 ATGTGAACAT
*
83734786 GTGATTATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
1 GTGA-TATGTGATTACGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
*
83734836 GTGATATGTGATT-CGTGTAAGACCATAGCTGGGCTATGGCATCGGTAT
1 GTGATATGTGATTACGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
* *
83734884 GTGA-ATTGTGATTACGTGTAAGACCATAGTTGGACTATGGCATCG
1 GTGATA-TGTGATTACGTGTAAGACCATAGCTGGGCTATGGCATCG
83734929 AGAAAATGAA
Statistics
Matches: 88, Mismatches: 3, Indels: 5
0.92 0.03 0.05
Matches are distributed among these distances:
47 1 0.01
48 45 0.51
49 38 0.43
50 4 0.05
ACGTcount: A:0.24, C:0.15, G:0.30, T:0.31
Consensus pattern (49 bp):
GTGATATGTGATTACGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
Found at i:83738158 original size:45 final size:46
Alignment explanation
Indices: 83738116--83738265 Score: 248
Period size: 46 Copynumber: 3.3 Consensus size: 46
83738106 TGACAAGTGG
*
83738116 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGA-
1 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGAC
83738161 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGAC
1 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGAC
** * *
83738207 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGAC
1 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGAC
83738253 AAAGTGATAAGTG
1 AAAGTGATAAGTG
83738266 GCTACACTTA
Statistics
Matches: 99, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
45 44 0.44
46 55 0.56
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.29
Consensus pattern (46 bp):
AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGAC
Found at i:83738273 original size:37 final size:37
Alignment explanation
Indices: 83738229--83738373 Score: 233
Period size: 37 Copynumber: 4.0 Consensus size: 37
83738219 GATAGCTTTA
83738229 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
*
83738266 GCTACACTTATCTGATCAAGA-AAAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
* *
83738302 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
*
83738339 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
83738374 ATCATACGTA
Statistics
Matches: 101, Mismatches: 6, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
35 11 0.11
36 39 0.39
37 51 0.50
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
Found at i:83738340 original size:73 final size:72
Alignment explanation
Indices: 83738229--83738373 Score: 236
Period size: 73 Copynumber: 2.0 Consensus size: 72
83738219 GATAGCTTTA
*
83738229 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTGGCTACACTTATCTGATCAAGAAAAAAGT
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTATCTGATC-AGAAAAAAGT
83738294 GATAAGTG
65 GATAAGTG
* ** *
83738302 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTGGCTACACTTATCTGATCAGGGACAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTATCTGATCAGAAAAAAGTG
83738367 ATAAGTG
66 ATAAGTG
83738374 ATCATACGTA
Statistics
Matches: 67, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
72 15 0.22
73 52 0.78
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (72 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTATCTGATCAGAAAAAAGTG
ATAAGTG
Found at i:83739297 original size:47 final size:47
Alignment explanation
Indices: 83739221--83739958 Score: 1067
Period size: 47 Copynumber: 15.6 Consensus size: 47
83739211 CCCTTCGGAC
* * * * * * * *
83739221 TATCACATTTAGACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
*
83739268 TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
83739315 TATCACATATTATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATA-TATACACTTTCACATTCATCACATCGGCCATTAGGCCT
* *
83739363 TATCAC--ATATACACTTTCACATTCATCACACTCACATCGCTATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACA-T--C--GGCCATTAGGCCT
*
83739413 TATCACATATATAC-CTTTCACATTCATCACATCGGCTATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
83739459 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
* *
83739506 TA-CATATATATACACTTTCACATTCATCACATTGGCCATTA-GCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
* *
83739551 TATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCT
1 TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
*
83739600 TATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
*
83739647 TATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
* *
83739694 TATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCT
1 TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
*
83739743 TATCACATATATACAC-TTCACATTCATCACATCGGCTATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
*
83739789 TATCACATATATACACTTTCATATTCATCACATCGGCCA-TAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
* *
83739835 TATCACATATATATACACTTTCACATTCATCACATTGACCATTAGGCCT
1 TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
* *
83739884 TATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCT
1 TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
83739933 TATCACATATATACACTTTCACATTC
1 TATCACATATATACACTTTCACATTC
83739959 CAATGAATAA
Statistics
Matches: 638, Mismatches: 34, Indels: 38
0.90 0.05 0.05
Matches are distributed among these distances:
45 29 0.05
46 123 0.19
47 220 0.34
48 111 0.17
49 114 0.18
50 18 0.03
51 17 0.03
52 6 0.01
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
Found at i:83739708 original size:237 final size:236
Alignment explanation
Indices: 83739221--83739958 Score: 1100
Period size: 237 Copynumber: 3.1 Consensus size: 236
83739211 CCCTTCGGAC
* * * * *
83739221 TATCACATTTAGACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGT-CACATATATACACT
1 TATCACATATATACACTTTCACATTCATCACATTGGCCATTCGG-CCT-TACACATATATACACT
83739285 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT-TATACACTTTCACATTCATCACAT
64 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACAT
*
83739349 CGGCCATTAGGCCTTATCAC--ATATACACTTTCACATTCATCACACTCACATCGCTATTAGGCC
129 CGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA-T--C--GGCTATTAGGCC
83739412 TTATCACATATATAC-CTTTCACATTCATCACATCGGCTATTAGGCCT
189 TTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCT
* * *
83739459 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTACATATATATACACTTT
1 TATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTACACATATATACACTTT
* *
83739524 CACATTCATCACATTGGCCATTA-GCCTTATCACATATATATACACTTTCACATTCATCACATTG
66 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
*
83739588 GCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC
131 GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC
83739653 ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCT
196 ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCT
83739694 TATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 TATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTA-CACATATATACAC
* *
83739759 -TTCACATTCATCACATCGGCTATTAGGCCTTATCAC--ATATATACACTTTCATATTCATCACA
63 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
* * *
83739821 TCGGCCA-TAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGACCATTAGGCCTT
128 TCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTT
* * *
83739885 ATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCT
191 ATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCT
83739933 TATCACATATATACACTTTCACATTC
1 TATCACATATATACACTTTCACATTC
83739959 CAATGAATAA
Statistics
Matches: 461, Mismatches: 26, Indels: 27
0.90 0.05 0.05
Matches are distributed among these distances:
234 26 0.06
235 50 0.11
236 47 0.10
237 210 0.46
238 60 0.13
239 68 0.15
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (236 bp):
TATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTACACATATATACACTTT
CACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC
ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCT
Found at i:83739744 original size:284 final size:284
Alignment explanation
Indices: 83739221--83739958 Score: 1116
Period size: 284 Copynumber: 2.6 Consensus size: 284
83739211 CCCTTCGGAC
* * * * ** * *
83739221 TATCACATTTAGACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC--ATATATACAC
1 TATCACATATATACACTTTCACATTCATCACATTGGCCA-TTAGCCTTATCACATATATATACAC
*
83739284 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATTATACACTTTCACATTCATCACAT
65 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATA-TATACACTTTCACATTCATCACAT
83739349 CGGCCATTAGGCCTTATCAC--ATATACACTTTCACATTCATCACACTCACATCGCTATTAGGCC
129 CGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACACT-ACA-CGCTATTAGGCC
*
83739412 TTATCACATATATACCTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTT
192 TTATCACATATATACCTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC-T
83739477 TCACATTCATCACATCGGCCATTAGGCCT
256 TCACATTCATCACATCGGCCATTAGGCCT
*
83739506 TA-CATATATATACACTTTCACATTCATCACATTGGCCATTAGCCTTATCACATATATATACACT
1 TATCACATATATACACTTTCACATTCATCACATTGGCCATTAGCCTTATCACATATATATACACT
*
83739570 TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCG
66 TTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
* *
83739635 GCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACA-T-C-GGCTATTAGGCCTTAT
131 GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACACTACACGCTATTAGGCCTTAT
* *
83739697 CACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTC
196 CAC--ATATATAC-CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTC
*
83739762 ACATTCATCACATCGGCTATTAGGCCT
258 ACATTCATCACATCGGCCATTAGGCCT
* *
83739789 TATCACATATATACACTTTCATATTCATCACATCGGCCA-TAGGCCTTATCACATATATATACAC
1 TATCACATATATACACTTTCACATTCATCACATTGGCCATTA-GCCTTATCACATATATATACAC
*
83739853 TTTCACATTCATCACATTGACCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
65 TTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
* *
83739918 TTGGCCATTCGGCCTTATCACATATATACACTTTCACATTC
128 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTC
83739959 CAATGAATAA
Statistics
Matches: 417, Mismatches: 25, Indels: 21
0.90 0.05 0.05
Matches are distributed among these distances:
281 18 0.04
283 51 0.12
284 209 0.50
285 51 0.12
286 88 0.21
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (284 bp):
TATCACATATATACACTTTCACATTCATCACATTGGCCATTAGCCTTATCACATATATATACACT
TTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACACTACACGCTATTAGGCCTTAT
CACATATATACCTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTCACA
TTCATCACATCGGCCATTAGGCCT
Found at i:83740310 original size:75 final size:75
Alignment explanation
Indices: 83740225--83740375 Score: 302
Period size: 75 Copynumber: 2.0 Consensus size: 75
83740215 TCTTCCATCC
83740225 ATAAAATTTCCAGAATTTTAGGTTTGGTCAATCAATACCAGATTTTTCTTAAAGTTTCCCCTGTT
1 ATAAAATTTCCAGAATTTTAGGTTTGGTCAATCAATACCAGATTTTTCTTAAAGTTTCCCCTGTT
83740290 TCACTGTTTG
66 TCACTGTTTG
83740300 ATAAAATTTCCAGAATTTTAGGTTTGGTCAATCAATACCAGATTTTTCTTAAAGTTTCCCCTGTT
1 ATAAAATTTCCAGAATTTTAGGTTTGGTCAATCAATACCAGATTTTTCTTAAAGTTTCCCCTGTT
83740365 TCACTGTTTG
66 TCACTGTTTG
83740375 A
1 A
83740376 CTAATCTGAC
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
75 76 1.00
ACGTcount: A:0.27, C:0.17, G:0.13, T:0.42
Consensus pattern (75 bp):
ATAAAATTTCCAGAATTTTAGGTTTGGTCAATCAATACCAGATTTTTCTTAAAGTTTCCCCTGTT
TCACTGTTTG
Found at i:83740680 original size:64 final size:63
Alignment explanation
Indices: 83740546--83740672 Score: 245
Period size: 64 Copynumber: 2.0 Consensus size: 63
83740536 ACAGAACAGA
83740546 GGATTACAGTGTCATTCTGCACGTCTCACACAACTTTAAATATTTCATTATCGGAAATTAATT
1 GGATTACAGTGTCATTCTGCACGTCTCACACAACTTTAAATATTTCATTATCGGAAATTAATT
83740609 GGATTACAGTGTCATTCTGCACTGTCTCACACAACTTTAAATATTTCATTATCGGAAATTAATT
1 GGATTACAGTGTCATTCTGCAC-GTCTCACACAACTTTAAATATTTCATTATCGGAAATTAATT
83740673 TTCTTACACG
Statistics
Matches: 63, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
63 22 0.35
64 41 0.65
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.37
Consensus pattern (63 bp):
GGATTACAGTGTCATTCTGCACGTCTCACACAACTTTAAATATTTCATTATCGGAAATTAATT
Found at i:83741682 original size:13 final size:13
Alignment explanation
Indices: 83741664--83741688 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
83741654 TACTAAATTT
83741664 TCATGGATTCAAA
1 TCATGGATTCAAA
83741677 TCATGGATTCAA
1 TCATGGATTCAA
83741689 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAA
Found at i:83744965 original size:39 final size:39
Alignment explanation
Indices: 83744879--83745197 Score: 518
Period size: 39 Copynumber: 8.1 Consensus size: 39
83744869 CGAATACATG
83744879 TCACTAGCACGAATGCTCTTCGGGACTTAGTCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAG-CCGGATACA
* *
83744919 TCACTAGCACGAATGCTCTTCGGG-TTTAGCACGGATATA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGC-CGGATACA
* *
83744958 TCACTAGCACGAATGCTCTTCGGAACTTAGTCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCGGATACA
83744997 TCACTAGCAC-AATGCTCTTC-GGACTTAGTCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAG-CCGGATACA
*
83745035 TCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAG-CCGGATACA
83745075 TCACTAGCACGAATGCTCTTCGGGACTTAGCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCGGATACA
83745114 TCACTAGCACGAATGCTCTTCGGGACTTAGCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCGGATACA
*
83745153 TCACTAGCACGAATGCTCTTCGGGACTTAGTCCGGATATA
1 TCACTAGCACGAATGCTCTTCGGGACTTAG-CCGGATACA
83745193 TCACT
1 TCACT
83745198 CTCAATTCTC
Statistics
Matches: 261, Mismatches: 12, Indels: 12
0.92 0.04 0.04
Matches are distributed among these distances:
37 7 0.03
38 29 0.11
39 139 0.53
40 86 0.33
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
TCACTAGCACGAATGCTCTTCGGGACTTAGCCGGATACA
Found at i:83744973 original size:79 final size:80
Alignment explanation
Indices: 83744879--83745197 Score: 526
Period size: 79 Copynumber: 4.1 Consensus size: 80
83744869 CGAATACATG
83744879 TCACTAGCACGAATGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGG-
1 TCACTAGCACGAATGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGGA
* *
83744943 TTTAG-CACGGATATA
66 CTTAGTC-CGGATACA
*
83744958 TCACTAGCACGAATGCTCTTCGGAACTTAGT-CGGATACATCACTAGCAC-AATGCTCTTC-GGA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGGA
83745020 CTTAGTCCGGATACA
66 CTTAGTCCGGATACA
* *
83745035 TCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGGA
83745100 CTTAG-CCGGATACA
66 CTTAGTCCGGATACA
83745114 TCACTAGCACGAATGCTCTTCGGGACTTAG-CCGGATACATCACTAGCACGAATGCTCTTCGGGA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGGA
*
83745178 CTTAGTCCGGATATA
66 CTTAGTCCGGATACA
83745193 TCACT
1 TCACT
83745198 CTCAATTCTC
Statistics
Matches: 226, Mismatches: 8, Indels: 12
0.92 0.03 0.05
Matches are distributed among these distances:
76 2 0.01
77 49 0.22
78 76 0.34
79 91 0.40
80 8 0.04
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (80 bp):
TCACTAGCACGAATGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGGA
CTTAGTCCGGATACA
Found at i:83746521 original size:37 final size:37
Alignment explanation
Indices: 83746462--83746570 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
83746452 AGCTCAGACG
* *
83746462 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
83746499 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
83746536 TAATCGCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
83746571 ATATATTTCC
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.27, C:0.31, G:0.20, T:0.22
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:83746709 original size:47 final size:47
Alignment explanation
Indices: 83746650--83746887 Score: 365
Period size: 47 Copynumber: 5.1 Consensus size: 47
83746640 CATACATATT
* *
83746650 TCACATTAGCCATTCGGCCTTATCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
83746697 TCATATTGGCCATTCGG-CTTATCACACATATGCATGCTCACA-TCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
83746742 -CACATTGGCCATTCGGCCTTCTCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
83746788 TCATATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
83746835 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACGTTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
83746882 TCACAT
1 TCACAT
83746888 AAAATCCTAA
Statistics
Matches: 171, Mismatches: 17, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
44 15 0.09
45 24 0.14
46 25 0.15
47 107 0.63
ACGTcount: A:0.26, C:0.28, G:0.13, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:83746759 original size:91 final size:94
Alignment explanation
Indices: 83746650--83746884 Score: 404
Period size: 91 Copynumber: 2.5 Consensus size: 94
83746640 CATACATATT
*
83746650 TCACATTAGCCATTCGGCCTTATCACATATATGCATGTTCATATTCATCATATTGGCCATTCGG-
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCATCATATTGGCCATTCGGC
83746714 CTTATCACACATATGCATGCTCACA-TCA
66 CTTATCACACATATGCATGCTCACATTCA
*
83746742 -CACATTGGCCATTCGGCCTTCTCACATATATGCATGTTCATATTCATCATATTGGCCATTCGGC
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCATCATATTGGCCATTCGGC
*
83746806 CTTATCACACATATGCATGTTCACATTCA
66 CTTATCACACATATGCATGCTCACATTCA
**
83746835 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACGTTCATCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCATCA
83746885 CATAAAATCC
Statistics
Matches: 134, Mismatches: 6, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
91 61 0.46
92 24 0.18
93 3 0.02
94 46 0.34
ACGTcount: A:0.26, C:0.28, G:0.13, T:0.34
Consensus pattern (94 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCATCATATTGGCCATTCGGC
CTTATCACACATATGCATGCTCACATTCA
Found at i:83756883 original size:40 final size:40
Alignment explanation
Indices: 83756789--83756933 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
83756779 TACTCGAATG
*
83756789 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* * *
83756830 ACATCCGGACTAAGAT-CTGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
83756870 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
83756910 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
83756934 CTTGTGCGAG
Statistics
Matches: 90, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 1 0.01
40 61 0.68
41 27 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:83763039 original size:24 final size:24
Alignment explanation
Indices: 83763007--83763067 Score: 79
Period size: 24 Copynumber: 2.5 Consensus size: 24
83762997 AAAATCCAAT
* * *
83763007 GCACTATGTGTGCG-GTTTACTATG
1 GCACTATGTGTGCGAGTGTAATA-A
83763031 GCACTATGTGTGCGAGTGTAATAA
1 GCACTATGTGTGCGAGTGTAATAA
83763055 GCACTATGTGTGC
1 GCACTATGTGTGC
83763068 AAATTCGGTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
24 27 0.82
25 6 0.18
ACGTcount: A:0.21, C:0.16, G:0.30, T:0.33
Consensus pattern (24 bp):
GCACTATGTGTGCGAGTGTAATAA
Found at i:83763576 original size:24 final size:24
Alignment explanation
Indices: 83763549--83763596 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
83763539 TGAGGGATTG
83763549 AAAATGCTATTAAAATCTTGACTA
1 AAAATGCTATTAAAATCTTGACTA
83763573 AAAATGCTATTAAAATCTTGACTA
1 AAAATGCTATTAAAATCTTGACTA
83763597 TGTATTTTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.46, C:0.12, G:0.08, T:0.33
Consensus pattern (24 bp):
AAAATGCTATTAAAATCTTGACTA
Found at i:83772824 original size:27 final size:27
Alignment explanation
Indices: 83772783--83772951 Score: 148
Period size: 27 Copynumber: 6.3 Consensus size: 27
83772773 TGGGCCATAG
*
83772783 GGTAAAATGATCGAAATACCCCCGTAA
1 GGTAAAATGAACGAAATACCCCCGTAA
*
83772810 GGTAAAATGAACGAAATACCCCTGTAA
1 GGTAAAATGAACGAAATACCCCCGTAA
* * * *
83772837 GGTAAAATGATCGAAATA-CTCCATAG
1 GGTAAAATGAACGAAATACCCCCGTAA
* * *
83772863 GGTAAAATG-ACAAAAATACCCCCATAG
1 GGTAAAATGAAC-GAAATACCCCCGTAA
* * *
83772890 GGTAAAATGACCGAAATA-TCCCGATAG
1 GGTAAAATGAACGAAATACCCCCG-TAA
* *
83772917 GGTAAAATG-ACTGTAATACCCCTGTAA
1 GGTAAAATGAAC-GAAATACCCCCGTAA
*
83772944 GATAAAAT
1 GGTAAAAT
83772952 TATTATTTTG
Statistics
Matches: 116, Mismatches: 20, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
25 1 0.01
26 22 0.19
27 89 0.77
28 4 0.03
ACGTcount: A:0.43, C:0.18, G:0.18, T:0.20
Consensus pattern (27 bp):
GGTAAAATGAACGAAATACCCCCGTAA
Found at i:83772935 original size:80 final size:80
Alignment explanation
Indices: 83772777--83772926 Score: 214
Period size: 80 Copynumber: 1.9 Consensus size: 80
83772767 CCATTCTGGG
* *
83772777 CCATAGGGTAAAATGATCGAAATACCCCCGTAAGGTAAAATGAACGAAATACCCCTGTAAGGTAA
1 CCATAGGGTAAAATGATCAAAATACCCCCATAAGGTAAAATGAACGAAATACCCCTGTAAGGTAA
83772842 AATGATCGAAATACT
66 AATGATCGAAATACT
* * * *
83772857 CCATAGGGTAAAATGA-CAAAAATACCCCCATAGGGTAAAATGACCGAAATATCCC-GATAGGGT
1 CCATAGGGTAAAATGATC-AAAATACCCCCATAAGGTAAAATGAACGAAATACCCCTG-TAAGGT
83772920 AAAATGA
64 AAAATGA
83772927 CTGTAATACC
Statistics
Matches: 62, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
79 2 0.03
80 60 0.97
ACGTcount: A:0.43, C:0.19, G:0.19, T:0.19
Consensus pattern (80 bp):
CCATAGGGTAAAATGATCAAAATACCCCCATAAGGTAAAATGAACGAAATACCCCTGTAAGGTAA
AATGATCGAAATACT
Found at i:83772950 original size:54 final size:52
Alignment explanation
Indices: 83772783--83772951 Score: 189
Period size: 54 Copynumber: 3.2 Consensus size: 52
83772773 TGGGCCATAG
*
83772783 GGTAAAATGATCGAAATACCCCCG-TAAGGTAAAATGAACGAAATACCCCTGTAA
1 GGTAAAATGATCGAAATA--CCCGATAGGGTAAAATG-ACGAAATACCCCTGTAA
* ** *
83772837 GGTAAAATGATCGAAATACTCC-ATAGGGTAAAATGACAAAAATACCCCCATAG
1 GGTAAAATGATCGAAATAC-CCGATAGGGTAAAATGAC-GAAATACCCCTGTAA
* *
83772890 GGTAAAATGACCGAAATATCCCGATAGGGTAAAATGACTGTAATACCCCTGTAA
1 GGTAAAATGATCGAAATA-CCCGATAGGGTAAAATGAC-GAAATACCCCTGTAA
*
83772944 GATAAAAT
1 GGTAAAAT
83772952 TATTATTTTG
Statistics
Matches: 97, Mismatches: 13, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
52 3 0.03
53 43 0.44
54 51 0.53
ACGTcount: A:0.43, C:0.18, G:0.18, T:0.20
Consensus pattern (52 bp):
GGTAAAATGATCGAAATACCCGATAGGGTAAAATGACGAAATACCCCTGTAA
Found at i:83772986 original size:27 final size:27
Alignment explanation
Indices: 83772956--83773050 Score: 70
Period size: 27 Copynumber: 3.5 Consensus size: 27
83772946 TAAAATTATT
83772956 ATTTTGCCCATATGGGTTAAAATGACG
1 ATTTTGCCCATATGGGTTAAAATGACG
** *
83772983 ATTTTG-CCATTAT-TATGTAAAATCACG
1 ATTTTGCCCA-TATGGGT-TAAAATGACG
* * *
83773010 GTTTTGCCCTTATGAGG-TAAAATGACT
1 ATTTTGCCCATATG-GGTTAAAATGACG
* *
83773037 ATTTTACCCTTATG
1 ATTTTGCCCATATG
83773051 TGGTAGGATG
Statistics
Matches: 52, Mismatches: 11, Indels: 10
0.71 0.15 0.14
Matches are distributed among these distances:
26 4 0.08
27 46 0.88
28 2 0.04
ACGTcount: A:0.28, C:0.16, G:0.17, T:0.39
Consensus pattern (27 bp):
ATTTTGCCCATATGGGTTAAAATGACG
Found at i:83773055 original size:27 final size:27
Alignment explanation
Indices: 83773011--83773078 Score: 84
Period size: 27 Copynumber: 2.6 Consensus size: 27
83773001 AAAATCACGG
* *
83773011 TTTTGCCCTTATGAGGTAAAATGACTA
1 TTTTACCCTTATGTGGTAAAATGACTA
**
83773038 TTTTACCCTTATGTGGTAGGATGACTA
1 TTTTACCCTTATGTGGTAAAATGACTA
*
83773065 TTTTTCCC-TATGTG
1 TTTTACCCTTATGTG
83773079 ATGTATGTTT
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
26 6 0.17
27 30 0.83
ACGTcount: A:0.22, C:0.16, G:0.19, T:0.43
Consensus pattern (27 bp):
TTTTACCCTTATGTGGTAAAATGACTA
Found at i:83773428 original size:18 final size:18
Alignment explanation
Indices: 83773402--83773456 Score: 58
Period size: 18 Copynumber: 3.1 Consensus size: 18
83773392 GGACTTGCAT
83773402 ACTGTTTACTATTACTGC
1 ACTGTTTACTATTACTGC
* * *
83773420 ACTGGTTACTGTGACTGTC
1 ACTGTTTACTATTACTG-C
*
83773439 -CTATTTACTATTACTGC
1 ACTGTTTACTATTACTGC
83773456 A
1 A
83773457 ATGGGCCAAG
Statistics
Matches: 28, Mismatches: 7, Indels: 4
0.72 0.18 0.10
Matches are distributed among these distances:
17 1 0.04
18 26 0.93
19 1 0.04
ACGTcount: A:0.22, C:0.22, G:0.15, T:0.42
Consensus pattern (18 bp):
ACTGTTTACTATTACTGC
Found at i:83776404 original size:27 final size:27
Alignment explanation
Indices: 83776256--83776429 Score: 179
Period size: 27 Copynumber: 6.4 Consensus size: 27
83776246 TGGGCTAGAA
* *
83776256 GGTAGAATGACCGAAATAGCCCCC-TAG
1 GGTAAAATGACTGAAATA-CCCCCGTAG
* *
83776283 GGTAAAATGACTGACATACCCCCATAG
1 GGTAAAATGACTGAAATACCCCCGTAG
* *
83776310 GGTAAATTGACTGAAATACCCCAGTAG
1 GGTAAAATGACTGAAATACCCCCGTAG
* *
83776337 GGTAAGATGACTGAAATACCCCCATAG
1 GGTAAAATGACTGAAATACCCCCGTAG
* * **
83776364 GGTGAAATGACTGTAATACCCTTGTAG
1 GGTAAAATGACTGAAATACCCCCGTAG
** ** *
83776391 GGTAAAATGACTGTGATACCCTTGTAA
1 GGTAAAATGACTGAAATACCCCCGTAG
83776418 GGTAAAATGACT
1 GGTAAAATGACT
83776430 ATTTTGCCCT
Statistics
Matches: 126, Mismatches: 20, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
26 5 0.04
27 121 0.96
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (27 bp):
GGTAAAATGACTGAAATACCCCCGTAG
Found at i:83776410 original size:81 final size:81
Alignment explanation
Indices: 83776254--83776429 Score: 203
Period size: 81 Copynumber: 2.2 Consensus size: 81
83776244 ATTGGGCTAG
* * *
83776254 AAGGTAGAATGACCGAAATAGCCCCCTAGGGTAAAATGACTGACATACCCCCATAGGGTAAATTG
1 AAGGTAAAATGACTGAAATAGCCCCCTAGGGTAAAATGACTGACATACCCCCATAGGGTAAAATG
83776319 ACTGAAATACCCCAGT
66 ACTGAAATACCCCAGT
* * * ***
83776335 AGGGTAAGATGACTGAAATA-CCCCCATAGGGTGAAATGACTGTA-ATACCCTTGTAGGGTAAAA
1 AAGGTAAAATGACTGAAATAGCCCCC-TAGGGTAAAATGACTG-ACATACCCCCATAGGGTAAAA
** **
83776398 TGACTGTGATACCCTTGT
64 TGACTGAAATACCCCAGT
83776416 AAGGTAAAATGACT
1 AAGGTAAAATGACT
83776430 ATTTTGCCCT
Statistics
Matches: 78, Mismatches: 15, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
80 5 0.06
81 72 0.92
82 1 0.01
ACGTcount: A:0.36, C:0.19, G:0.23, T:0.22
Consensus pattern (81 bp):
AAGGTAAAATGACTGAAATAGCCCCCTAGGGTAAAATGACTGACATACCCCCATAGGGTAAAATG
ACTGAAATACCCCAGT
Found at i:83776439 original size:27 final size:27
Alignment explanation
Indices: 83776382--83776545 Score: 154
Period size: 27 Copynumber: 6.1 Consensus size: 27
83776372 GACTGTAATA
* * * ** *
83776382 CCCTTGTAGGGTAAAATGACTGTGATA
1 CCCTTATATGGTAAAATGACTATTTTG
* *
83776409 CCCTTGTAAGGTAAAATGACTATTTTG
1 CCCTTATATGGTAAAATGACTATTTTG
* *
83776436 CCCTTATATGTTAAAATGACGATTTTG
1 CCCTTATATGGTAAAATGACTATTTTG
*
83776463 CCCTTATGTGGTAAAATGAC-AGTTTTG
1 CCCTTATATGGTAAAATGACTA-TTTTG
83776490 CCCTTATGA-GGT-AAATGACTATTTTG
1 CCCTTAT-ATGGTAAAATGACTATTTTG
* * **
83776516 CTCTTATGTGGTAGGATGACTATTTTG
1 CCCTTATATGGTAAAATGACTATTTTG
83776543 CCC
1 CCC
83776546 CTATGTGATG
Statistics
Matches: 115, Mismatches: 17, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
26 22 0.19
27 93 0.81
ACGTcount: A:0.26, C:0.16, G:0.21, T:0.37
Consensus pattern (27 bp):
CCCTTATATGGTAAAATGACTATTTTG
Found at i:83776526 original size:53 final size:55
Alignment explanation
Indices: 83776418--83776550 Score: 175
Period size: 53 Copynumber: 2.5 Consensus size: 55
83776408 ACCCTTGTAA
*
83776418 GGTAAAATGACTATTTTGCCCTTAT-ATGTTAAAATGACGATTTTGCCCTTATGT
1 GGTAAAATGACTATTTTGCCCTTATGATGGTAAAATGACGATTTTGCCCTTATGT
* *
83776472 GGTAAAATGAC-AGTTTTGCCCTTATGA-GGT-AAATGACTATTTTGCTCTTATGT
1 GGTAAAATGACTA-TTTTGCCCTTATGATGGTAAAATGACGATTTTGCCCTTATGT
** *
83776525 GGTAGGATGACTATTTTGCCCCTATG
1 GGTAAAATGACTATTTTGCCCTTATG
83776551 TGATGTATGT
Statistics
Matches: 70, Mismatches: 6, Indels: 7
0.84 0.07 0.08
Matches are distributed among these distances:
53 43 0.61
54 26 0.37
55 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.20, T:0.39
Consensus pattern (55 bp):
GGTAAAATGACTATTTTGCCCTTATGATGGTAAAATGACGATTTTGCCCTTATGT
Found at i:83776550 original size:27 final size:27
Alignment explanation
Indices: 83776418--83776552 Score: 175
Period size: 27 Copynumber: 5.0 Consensus size: 27
83776408 ACCCTTGTAA
*
83776418 GGTAAAATGACTATTTTGCCCTTATAT
1 GGTAAAATGACTATTTTGCCCTTATGT
* *
83776445 GTTAAAATGACGATTTTGCCCTTATGT
1 GGTAAAATGACTATTTTGCCCTTATGT
*
83776472 GGTAAAATGAC-AGTTTTGCCCTTATGA
1 GGTAAAATGACTA-TTTTGCCCTTATGT
*
83776499 GGT-AAATGACTATTTTGCTCTTATGT
1 GGTAAAATGACTATTTTGCCCTTATGT
** *
83776525 GGTAGGATGACTATTTTGCCCCTATGT
1 GGTAAAATGACTATTTTGCCCTTATGT
83776552 G
1 G
83776553 ATGTATGTTT
Statistics
Matches: 94, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
26 23 0.24
27 71 0.76
ACGTcount: A:0.25, C:0.15, G:0.21, T:0.39
Consensus pattern (27 bp):
GGTAAAATGACTATTTTGCCCTTATGT
Found at i:83779487 original size:18 final size:18
Alignment explanation
Indices: 83779434--83779489 Score: 85
Period size: 18 Copynumber: 3.1 Consensus size: 18
83779424 ACTTGCATAC
*
83779434 TGTTTACTGTTACTGCAC
1 TGTTTACTGTTACTGCAA
* *
83779452 TGATTACTGTGACTGCAA
1 TGTTTACTGTTACTGCAA
83779470 TGTTTACTGTTACTGCAA
1 TGTTTACTGTTACTGCAA
83779488 TG
1 TG
83779490 GGCCAAGGCC
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 33 1.00
ACGTcount: A:0.21, C:0.18, G:0.20, T:0.41
Consensus pattern (18 bp):
TGTTTACTGTTACTGCAA
Found at i:83781331 original size:20 final size:20
Alignment explanation
Indices: 83781306--83781360 Score: 101
Period size: 20 Copynumber: 2.8 Consensus size: 20
83781296 TATAATCGAC
83781306 ACGAAGCCCACAATATCAAT
1 ACGAAGCCCACAATATCAAT
*
83781326 ACGAAGCCCACAATATCGAT
1 ACGAAGCCCACAATATCAAT
83781346 ACGAAGCCCACAATA
1 ACGAAGCCCACAATA
83781361 ACGGCACACA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.44, C:0.31, G:0.13, T:0.13
Consensus pattern (20 bp):
ACGAAGCCCACAATATCAAT
Found at i:83783270 original size:39 final size:39
Alignment explanation
Indices: 83783213--83783505 Score: 408
Period size: 39 Copynumber: 7.3 Consensus size: 39
83783203 CAGGACTTTA
* * *
83783213 AGCCCGAATATAATACCAGCACGAATGCCTTCGGGGCTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
83783252 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
* *
83783291 AGCCCGGATATAACACCTAACACCAGCACGAATGCCTTTGGGGCTT
1 AGCCCGG--AT---A--TAACACCAGCACGAATGCCTTCGGGACTT
*
83783337 AGCCCGGATATAACACCAGCACGAATGCCTTCGAGACTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
* *
83783376 AGCTCGGATATAACACCAGCACAAATGCCTTCGGGACTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
* * *
83783415 AGCCCGGATATAACACCAACACAAAAGCCTTCAGGG-CTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTC-GGGACTT
83783454 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
83783493 AGCCCGGATATAA
1 AGCCCGGATATAA
83783506 TTCTCCATTA
Statistics
Matches: 228, Mismatches: 17, Indels: 18
0.87 0.06 0.07
Matches are distributed among these distances:
38 3 0.01
39 182 0.80
40 3 0.01
41 3 0.01
44 3 0.01
46 34 0.15
ACGTcount: A:0.30, C:0.30, G:0.22, T:0.18
Consensus pattern (39 bp):
AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
Found at i:83789407 original size:39 final size:39
Alignment explanation
Indices: 83789353--83789631 Score: 452
Period size: 39 Copynumber: 7.2 Consensus size: 39
83789343 TTAAGCCTGA
* * *
83789353 ATATAATATCAGCACGAATGCCTTCGGGGCTTAGCCCGG
1 ATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGG
*
83789392 ATATAACACCAGCACGAATGCCTTCGGGACTTAGCCTGG
1 ATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGG
83789431 ATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGG
1 ATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGG
* *
83789470 ATATAACACCAGCACAAATGCCTTCAGGG-CTTAGCCCAG
1 ATATAACACCAGCACGAATGCCTTC-GGGACTTAGCCCGG
*
83789509 ATATAACACCAGCACGAATGCCTTCGGGACTTAGCTCGG
1 ATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGG
* *
83789548 ATATAACACCAGCACGAATGACTTCGGGACTTCGCCCGG
1 ATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGG
*
83789587 ATATAACACCAGCACAAATGCCTTCGGGACTTAGCCCGG
1 ATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGG
83789626 ATATAA
1 ATATAA
83789632 TTCTCCATTA
Statistics
Matches: 222, Mismatches: 16, Indels: 4
0.92 0.07 0.02
Matches are distributed among these distances:
38 3 0.01
39 216 0.97
40 3 0.01
ACGTcount: A:0.30, C:0.29, G:0.22, T:0.20
Consensus pattern (39 bp):
ATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGG
Found at i:83792436 original size:27 final size:27
Alignment explanation
Indices: 83792398--83792651 Score: 260
Period size: 27 Copynumber: 9.4 Consensus size: 27
83792388 TTAGTTTATC
83792398 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * ** * *
83792425 TAATCAATAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
83792452 AAATTACCAAAATGCCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
83792479 AAATTACCAAAATACCCTTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
83792506 AAATTACCAAAATACCCTTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
83792533 AAATTATCAAAATACCCCTAATTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
83792560 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
* ***
83792587 AAATTACAAAAATA-CCCTCGACCTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
** **
83792614 AAATTATTAAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
83792641 AAATTACCAAA
1 AAATTACCAAA
83792652 GTACGCTTGA
Statistics
Matches: 195, Mismatches: 31, Indels: 2
0.86 0.14 0.01
Matches are distributed among these distances:
26 4 0.02
27 191 0.98
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:83792734 original size:27 final size:27
Alignment explanation
Indices: 83792696--83792917 Score: 239
Period size: 27 Copynumber: 8.3 Consensus size: 27
83792686 CGATTTACAA
* * *
83792696 AATTACCAAAATATCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
83792723 AAATACCAAAATGCCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
83792750 AATTACCGAAATACCCCTCTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
83792777 AATTATCGCAATACCACTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
83792804 AATTACCGAAATACCACTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
83792831 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * *
83792858 AATTACTAAAATACCCCTGTAGAGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
83792885 AATTACCGAGATA-CCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
83792911 AATTACC
1 AATTACC
83792918 ATTTTGCCCC
Statistics
Matches: 164, Mismatches: 31, Indels: 1
0.84 0.16 0.01
Matches are distributed among these distances:
26 15 0.09
27 149 0.91
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:83793611 original size:26 final size:27
Alignment explanation
Indices: 83793567--83793640 Score: 87
Period size: 27 Copynumber: 2.8 Consensus size: 27
83793557 ATTCTGTTAA
* *
83793567 GTGGCTTTGCCACATTATCTGT-TCTG
1 GTGGCTCTGCCACAATATCTGTATCTG
*
83793593 GTGGCTCTGCTACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTATCTG
* * *
83793620 GTGACTCTGTCATAATATCTG
1 GTGGCTCTGCCACAATATCTG
83793641 ATAACTTAGC
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
26 19 0.47
27 21 0.52
ACGTcount: A:0.18, C:0.22, G:0.22, T:0.39
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTATCTG
Found at i:83793815 original size:6 final size:6
Alignment explanation
Indices: 83793800--83793909 Score: 66
Period size: 6 Copynumber: 17.8 Consensus size: 6
83793790 ATTCTGTTAC
* * *
83793800 CTGATA CTGATT CTGATT TTGATT CTG-TT ACCTGATA CTGATT CTG-TT
1 CTGATT CTGATT CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT
* * * *
83793848 ACCTGATA CTGATT CTGATT CTG-TCA CTTAATT CTGATT TTGATT CTGATT
1 --CTGATT CTGATT CTGATT CTGAT-T C-TGATT CTGATT CTGATT CTGATT
83793899 CT-AGTT CTGAT
1 CTGA-TT CTGAT
83793910 AATGTTTCTT
Statistics
Matches: 80, Mismatches: 13, Indels: 22
0.70 0.11 0.19
Matches are distributed among these distances:
5 6 0.08
6 62 0.77
7 9 0.11
8 3 0.04
ACGTcount: A:0.20, C:0.17, G:0.15, T:0.47
Consensus pattern (6 bp):
CTGATT
Found at i:83793828 original size:31 final size:32
Alignment explanation
Indices: 83793777--83793845 Score: 122
Period size: 31 Copynumber: 2.2 Consensus size: 32
83793767 TTGCATTCAC
*
83793777 ATTCTGATTTTTTATTCTGTTACCTGATACTG
1 ATTCTGATTTTTGATTCTGTTACCTGATACTG
83793809 ATTCTGA-TTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTTGATTCTGTTACCTGATACTG
83793840 ATTCTG
1 ATTCTG
83793846 TTACCTGATA
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
31 29 0.81
32 7 0.19
ACGTcount: A:0.19, C:0.16, G:0.14, T:0.51
Consensus pattern (32 bp):
ATTCTGATTTTTGATTCTGTTACCTGATACTG
Found at i:83793840 original size:25 final size:25
Alignment explanation
Indices: 83793806--83793895 Score: 84
Period size: 25 Copynumber: 3.8 Consensus size: 25
83793796 TTACCTGATA
*
83793806 CTGATTCTGATTTTGATTCTGTTAC
1 CTGATACTGATTTTGATTCTGTTAC
83793831 CTGATAC------TGATTCTGTTAC
1 CTGATACTGATTTTGATTCTGTTAC
* *
83793850 CTGATACTGATTCTGATTCTGTCAC
1 CTGATACTGATTTTGATTCTGTTAC
* * *
83793875 TTAATTCTGATTTTGATTCTG
1 CTGATACTGATTTTGATTCTG
83793896 ATTCTAGTTC
Statistics
Matches: 53, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
19 19 0.36
25 34 0.64
ACGTcount: A:0.19, C:0.18, G:0.16, T:0.48
Consensus pattern (25 bp):
CTGATACTGATTTTGATTCTGTTAC
Found at i:83793841 original size:19 final size:19
Alignment explanation
Indices: 83793819--83793864 Score: 92
Period size: 19 Copynumber: 2.4 Consensus size: 19
83793809 ATTCTGATTT
83793819 TGATTCTGTTACCTGATAC
1 TGATTCTGTTACCTGATAC
83793838 TGATTCTGTTACCTGATAC
1 TGATTCTGTTACCTGATAC
83793857 TGATTCTG
1 TGATTCTG
83793865 ATTCTGTCAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.20, C:0.20, G:0.17, T:0.43
Consensus pattern (19 bp):
TGATTCTGTTACCTGATAC
Found at i:83793892 original size:50 final size:51
Alignment explanation
Indices: 83793777--83793895 Score: 136
Period size: 50 Copynumber: 2.4 Consensus size: 51
83793767 TTGCATTCAC
* * * *
83793777 ATTCTGATTTTTTATTCTGTTACCTGATACTGATTCTGATTTTGATTCTGTT
1 ATTCTGA-TTTTGATTCTGTTACCTGATACTGATTCTGATTCTGATACTGTA
* **
83793829 A-CCTGATACTGATTCTGTTACCTGATACTGATTCTGATTCTG-TCACT-TA
1 ATTCTGATTTTGATTCTGTTACCTGATACTGATTCTGATTCTGAT-ACTGTA
83793878 ATTCTGATTTTGATTCTG
1 ATTCTGATTTTGATTCTG
83793896 ATTCTAGTTC
Statistics
Matches: 55, Mismatches: 10, Indels: 6
0.77 0.14 0.08
Matches are distributed among these distances:
49 3 0.05
50 47 0.85
51 4 0.07
52 1 0.02
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.50
Consensus pattern (51 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTGATTCTGATTCTGATACTGTA
Found at i:83795879 original size:27 final size:27
Alignment explanation
Indices: 83795848--83796033 Score: 221
Period size: 27 Copynumber: 6.9 Consensus size: 27
83795838 GAATACTTTA
*
83795848 GTTTGTCAAATTACCAAAATACCCCTG
1 GTTTGTAAAATTACCAAAATACCCCTG
* * ** *
83795875 GTTTGTATAATCAAAAAAATACCCTTG
1 GTTTGTAAAATTACCAAAATACCCCTG
*
83795902 GTTTGTAAAATTACCAAAATACCCCTA
1 GTTTGTAAAATTACCAAAATACCCCTG
* *
83795929 GTTTGTAAAATTACCAAAATACCCTTA
1 GTTTGTAAAATTACCAAAATACCCCTG
*
83795956 GTTTGTAAAATTACAAAAATACCCC-G
1 GTTTGTAAAATTACCAAAATACCCCTG
*
83795982 AGTTTGTAAAATTACCAAAATACCCCTC
1 -GTTTGTAAAATTACCAAAATACCCCTG
* * **
83796010 ATTTGTGAAATTACTGAAATACCC
1 GTTTGTAAAATTACCAAAATACCC
83796034 TCGACCTGTA
Statistics
Matches: 135, Mismatches: 22, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
27 135 1.00
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (27 bp):
GTTTGTAAAATTACCAAAATACCCCTG
Found at i:83795987 original size:81 final size:81
Alignment explanation
Indices: 83795846--83796034 Score: 256
Period size: 81 Copynumber: 2.3 Consensus size: 81
83795836 TAGAATACTT
* * * * *
83795846 TAGTTTGTCAAATTACCAAAATACCCCTGGTTTGTATAATCAAAAAAATACCCTTGGTTTGTAAA
1 TAGTTTGTAAAATTACCAAAATACCCTTAGTTTGTAAAATCAAAAAAATACCCTCGGTTTGTAAA
83795911 ATTACCAAAATACCCC
66 ATTACCAAAATACCCC
* *
83795927 TAGTTTGTAAAATTACCAAAATACCCTTAGTTTGTAAAATTACAAAAATACCC-CGAGTTTGTAA
1 TAGTTTGTAAAATTACCAAAATACCCTTAGTTTGTAAAATCAAAAAAATACCCTCG-GTTTGTAA
83795991 AATTACCAAAATACCCC
65 AATTACCAAAATACCCC
* **
83796008 TCA-TTTGTGAAATTACTGAAATACCCT
1 T-AGTTTGTAAAATTACCAAAATACCCT
83796035 CGACCTGTAA
Statistics
Matches: 96, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
80 1 0.01
81 94 0.98
82 1 0.01
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (81 bp):
TAGTTTGTAAAATTACCAAAATACCCTTAGTTTGTAAAATCAAAAAAATACCCTCGGTTTGTAAA
ATTACCAAAATACCCC
Found at i:83796044 original size:81 final size:82
Alignment explanation
Indices: 83795846--83796087 Score: 244
Period size: 81 Copynumber: 3.0 Consensus size: 82
83795836 TAGAATACTT
* ** * * * *
83795846 TAGTTTGTCAAATTACCAAAATACCCCTG-GTTTGTATAATCAAAAAAATACCCTTG-GTTTGTA
1 TAGTTTGTAAAATTACCAAAATA-CCCTGAGCCTGTAAAATTACAAAAATACCCTCGAGTTTGTA
83795909 AAATTACCAAAATACCCC
65 AAATTACCAAAATACCCC
* **
83795927 TAGTTTGTAAAATTACCAAAATACCCTTAGTTTGTAAAATTACAAAAATACCC-CGAGTTTGTAA
1 TAGTTTGTAAAATTACCAAAATACCCTGAGCCTGTAAAATTACAAAAATACCCTCGAGTTTGTAA
83795991 AATTACCAAAATACCCC
66 AATTACCAAAATACCCC
* ** *** * *
83796008 TCA-TTTGTGAAATTACTGAAATACCCTCGA-CCTGTAAAATTATTGATATACCCTCGA-CTTGT
1 T-AGTTTGTAAAATTACCAAAATACCCT-GAGCCTGTAAAATTACAAAAATACCCTCGAGTTTGT
*
83796070 AAAATTACCAAAGTACCC
64 AAAATTACCAAAATACCC
83796088 TTGATTTACA
Statistics
Matches: 138, Mismatches: 18, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
80 5 0.04
81 128 0.93
82 5 0.04
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (82 bp):
TAGTTTGTAAAATTACCAAAATACCCTGAGCCTGTAAAATTACAAAAATACCCTCGAGTTTGTAA
AATTACCAAAATACCCC
Found at i:83796047 original size:27 final size:27
Alignment explanation
Indices: 83795890--83796088 Score: 145
Period size: 27 Copynumber: 7.4 Consensus size: 27
83795880 TATAATCAAA
* ** *
83795890 AAAATACCCTTGGTTTGTAAAATTACC
1 AAAATACCCTCGACTTGTAAAATTACT
* * *
83795917 AAAATACCC-CTAGTTTGTAAAATTACC
1 AAAATACCCTCGA-CTTGTAAAATTACT
* * *
83795944 AAAATACCCT-TAGTTTGTAAAATTACA
1 AAAATACCCTCGA-CTTGTAAAATTACT
* *
83795971 AAAATACCC-CGAGTTTGTAAAATTACC
1 AAAATACCCTCGA-CTTGTAAAATTACT
* *
83795998 AAAATACCCCTC-ATTTGTGAAATTACT
1 AAAATA-CCCTCGACTTGTAAAATTACT
* * *
83796025 GAAATACCCTCGACCTGTAAAATTATT
1 AAAATACCCTCGACTTGTAAAATTACT
* * *
83796052 GATATACCCTCGACTTGTAAAATTACC
1 AAAATACCCTCGACTTGTAAAATTACT
*
83796079 AAAGTACCCT
1 AAAATACCCT
83796089 TGATTTACAG
Statistics
Matches: 146, Mismatches: 20, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
26 5 0.03
27 136 0.93
28 4 0.03
29 1 0.01
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.30
Consensus pattern (27 bp):
AAAATACCCTCGACTTGTAAAATTACT
Found at i:83796102 original size:27 final size:27
Alignment explanation
Indices: 83796070--83796144 Score: 96
Period size: 27 Copynumber: 2.8 Consensus size: 27
83796060 CTCGACTTGT
*
83796070 AAAATTACCAAAGTACCCTTGATTTAC
1 AAAATTACCAAAATACCCTTGATTTAC
* * ***
83796097 AGAATTATCATTTTACCCTTGATTTAC
1 AAAATTACCAAAATACCCTTGATTTAC
83796124 AAAATTACCAAAATACCCTTG
1 AAAATTACCAAAATACCCTTG
83796145 TAGGGTAGAA
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.39, C:0.21, G:0.07, T:0.33
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTTGATTTAC
Found at i:83796301 original size:27 final size:27
Alignment explanation
Indices: 83796126--83796302 Score: 246
Period size: 27 Copynumber: 6.6 Consensus size: 27
83796116 TGATTTACAA
* *
83796126 AATTACCAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
83796153 AAATACCAAAATACTCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
83796180 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
83796207 AATTACCGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
83796234 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
83796261 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
83796288 AATTACCGAGATACC
1 AATTACCGAAATACC
83796303 TTGTGGAGTA
Statistics
Matches: 132, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 132 1.00
ACGTcount: A:0.36, C:0.21, G:0.20, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:83796807 original size:22 final size:21
Alignment explanation
Indices: 83796747--83796811 Score: 58
Period size: 22 Copynumber: 3.0 Consensus size: 21
83796737 TTAAAGCCTT
* *
83796747 CTGATTATGGCTTTGTGTCAAC
1 CTGA-TATGGCTCTGTGCCAAC
* *
83796769 CTACATATTGCTCTGTGCCAAC
1 CT-GATATGGCTCTGTGCCAAC
*
83796791 CTGATGATGGCTGTGTGCCAA
1 CTGAT-ATGGCTCTGTGCCAA
83796812 ACGTATTTGC
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
21 2 0.06
22 31 0.91
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (21 bp):
CTGATATGGCTCTGTGCCAAC
Found at i:83797014 original size:26 final size:27
Alignment explanation
Indices: 83796970--83797043 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
83796960 ATTCTATTAA
* * *
83796970 GTGGCTTTGCCACATTATCTGT-TCTG
1 GTGGCTCTGCTACAATATCTGTATCTG
83796996 GTGGCTCTGCTACAATATCTGTATCTG
1 GTGGCTCTGCTACAATATCTGTATCTG
*
83797023 GTGACTCTG-TCACAATATCTG
1 GTGGCTCTGCT-ACAATATCTG
83797044 ATAACTTAGC
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
26 20 0.48
27 22 0.52
ACGTcount: A:0.18, C:0.23, G:0.22, T:0.38
Consensus pattern (27 bp):
GTGGCTCTGCTACAATATCTGTATCTG
Found at i:83797219 original size:6 final size:6
Alignment explanation
Indices: 83797180--83797330 Score: 89
Period size: 6 Copynumber: 24.3 Consensus size: 6
83797170 TTGCATTCAC
* *
83797180 ATTCTG ATTTTTG ATTCTG -TTACCTG ATAT-TG ATTCTG ATTTTG ATTCT-
1 ATTCTG A-TTCTG ATTCTG ATT--CTG AT-TCTG ATTCTG ATTCTG ATTCTG
* * * *
83797229 ATTACCTG ATACTG ATTCTC ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
* *
83797280 ATTCTG ATTCTG -TCACTTG ATTCTG ATTTTG ATTCTG ATTCT- AGTTCTG
1 ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG
83797329 AT
1 AT
83797331 AATGTTTCTT
Statistics
Matches: 112, Mismatches: 16, Indels: 34
0.69 0.10 0.21
Matches are distributed among these distances:
5 10 0.09
6 79 0.71
7 17 0.15
8 5 0.04
9 1 0.01
ACGTcount: A:0.19, C:0.16, G:0.15, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:83797226 original size:31 final size:31
Alignment explanation
Indices: 83797180--83797321 Score: 194
Period size: 31 Copynumber: 4.5 Consensus size: 31
83797170 TTGCATTCAC
*
83797180 ATTCTGATTTTTGATTCTGTTACCTGATATTG
1 ATTCTGA-TTTTGATTCTGTTACCTGATACTG
*
83797212 ATTCTGATTTTGATTCTATTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
*
83797243 ATTCTCATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
* * * *
83797274 ATTCTGATTCTGATTCTGTCACTTGATTCTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
* *
83797305 ATTTTGATTCTGATTCT
1 ATTCTGATTTTGATTCT
83797322 AGTTCTGATA
Statistics
Matches: 100, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
31 93 0.93
32 7 0.07
ACGTcount: A:0.19, C:0.16, G:0.14, T:0.51
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:83797306 original size:62 final size:62
Alignment explanation
Indices: 83797188--83797346 Score: 187
Period size: 62 Copynumber: 2.6 Consensus size: 62
83797178 ACATTCTGAT
* * *
83797188 TTTTGATTCTGTTACCTGATATTGATTCTGATTTTGATTCTATTACCTGATACTGATTCTCA
1 TTTTGATTCTGTTACCTGATAATGATTCTGATTCTGATTCTATCACCTGATACTGATTCTCA
* * * * * *
83797250 TTTTGATTCTGTTACCTGATACTGATTCTGATTCTGATTCTGTCACTTGATTCTGATTTTGA
1 TTTTGATTCTGTTACCTGATAATGATTCTGATTCTGATTCTATCACCTGATACTGATTCTCA
* * *
83797312 TTCTGATTCTAGTT--CTGATAATGTTTCTTATTCTG
1 TTTTGATTCT-GTTACCTGATAATGATTCTGATTCTG
83797347 TAATGGGTTA
Statistics
Matches: 84, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
61 18 0.21
62 63 0.75
63 3 0.04
ACGTcount: A:0.19, C:0.16, G:0.14, T:0.51
Consensus pattern (62 bp):
TTTTGATTCTGTTACCTGATAATGATTCTGATTCTGATTCTATCACCTGATACTGATTCTCA
Found at i:83800597 original size:16 final size:16
Alignment explanation
Indices: 83800576--83800606 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
83800566 ATCCCAACCC
*
83800576 ATGCAACATGTCATGT
1 ATGCAAAATGTCATGT
83800592 ATGCAAAATGTCATG
1 ATGCAAAATGTCATG
83800607 ACCATATTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.29
Consensus pattern (16 bp):
ATGCAAAATGTCATGT
Found at i:83802795 original size:24 final size:24
Alignment explanation
Indices: 83802768--83802817 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
83802758 AAGAAAGATT
83802768 ATCAGAACTAGAATCAAAATGAGA
1 ATCAGAACTAGAATCAAAATGAGA
* * *
83802792 ATCAGAATTAGAATCAGAATGTGA
1 ATCAGAACTAGAATCAAAATGAGA
83802816 AT
1 AT
83802818 GCAATCCCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.50, C:0.10, G:0.18, T:0.22
Consensus pattern (24 bp):
ATCAGAACTAGAATCAAAATGAGA
Found at i:83802811 original size:12 final size:12
Alignment explanation
Indices: 83802768--83802811 Score: 61
Period size: 12 Copynumber: 3.7 Consensus size: 12
83802758 AAGAAAGATT
*
83802768 ATCAGAACTAGA
1 ATCAGAATTAGA
* *
83802780 ATCAAAATGAGA
1 ATCAGAATTAGA
83802792 ATCAGAATTAGA
1 ATCAGAATTAGA
83802804 ATCAGAAT
1 ATCAGAAT
83802812 GTGAATGCAA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.52, C:0.11, G:0.16, T:0.20
Consensus pattern (12 bp):
ATCAGAATTAGA
Found at i:83805927 original size:16 final size:16
Alignment explanation
Indices: 83805906--83805936 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
83805896 ATCCCAACCC
*
83805906 ATGCAACATGTCATGT
1 ATGCAAAATGTCATGT
83805922 ATGCAAAATGTCATG
1 ATGCAAAATGTCATG
83805937 CCCATATTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.29
Consensus pattern (16 bp):
ATGCAAAATGTCATGT
Found at i:83808118 original size:24 final size:24
Alignment explanation
Indices: 83808091--83808140 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
83808081 AAGAAAGATT
83808091 ATCAGAACTAGAATCAAAATGAGA
1 ATCAGAACTAGAATCAAAATGAGA
* * *
83808115 ATCAGAATTAGAATCAGAATGTGA
1 ATCAGAACTAGAATCAAAATGAGA
83808139 AT
1 AT
83808141 GCAATCCCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.50, C:0.10, G:0.18, T:0.22
Consensus pattern (24 bp):
ATCAGAACTAGAATCAAAATGAGA
Found at i:83808134 original size:12 final size:12
Alignment explanation
Indices: 83808091--83808134 Score: 61
Period size: 12 Copynumber: 3.7 Consensus size: 12
83808081 AAGAAAGATT
*
83808091 ATCAGAACTAGA
1 ATCAGAATTAGA
* *
83808103 ATCAAAATGAGA
1 ATCAGAATTAGA
83808115 ATCAGAATTAGA
1 ATCAGAATTAGA
83808127 ATCAGAAT
1 ATCAGAAT
83808135 GTGAATGCAA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.52, C:0.11, G:0.16, T:0.20
Consensus pattern (12 bp):
ATCAGAATTAGA
Found at i:83811070 original size:20 final size:20
Alignment explanation
Indices: 83811025--83811070 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
83811015 TAATCGGCAG
* *
83811025 AAAGCCCACAATATCGATAC
1 AAAGCCCACAATAACGACAC
*
83811045 AAAGCCCACAATAACGGCAC
1 AAAGCCCACAATAACGACAC
*
83811065 ACAGCC
1 AAAGCC
83811071 TTCGGTAACA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.43, C:0.35, G:0.13, T:0.09
Consensus pattern (20 bp):
AAAGCCCACAATAACGACAC
Found at i:83814961 original size:10 final size:10
Alignment explanation
Indices: 83814946--83814971 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
83814936 CTTCTACGAC
83814946 AAAACAGCCT
1 AAAACAGCCT
83814956 AAAACAGCCT
1 AAAACAGCCT
83814966 AAAACA
1 AAAACA
83814972 TTTTATGCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.58, C:0.27, G:0.08, T:0.08
Consensus pattern (10 bp):
AAAACAGCCT
Found at i:83816658 original size:47 final size:47
Alignment explanation
Indices: 83816580--83817112 Score: 931
Period size: 47 Copynumber: 11.3 Consensus size: 47
83816570 CCCTTCGGGA
* * * * * *
83816580 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
83816627 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
83816674 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
83816721 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
83816768 CTTATCACATATATACACTTTCAGATTCATCACATCGACTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83816815 CTTATCACATATATACACTTTCACATTCATCAACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATC-ACATCGGCCATTAGGC
83816863 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83816910 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83816957 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83817004 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83817051 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83817098 CTTATCACATATATA
1 CTTATCACATATATA
83817113 TACATTCAAC
Statistics
Matches: 463, Mismatches: 22, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
47 418 0.90
48 45 0.10
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:83817087 original size:283 final size:283
Alignment explanation
Indices: 83816580--83817112 Score: 940
Period size: 283 Copynumber: 1.9 Consensus size: 283
83816570 CCCTTCGGGA
* * * * *
83816580 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
83816645 TTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACATC
* *
83816710 GGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCA
131 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
* *
83816775 CATATATACACTTTCAGATTCATCACATCGACTATTAGGCCTTATCACATATATACACTTTCACA
196 CATATATACACTTTCACATTCATCACATCGACCATTAGGCCTTATCACATATATACACTTTCACA
83816840 TTCATCAACATCGGCCATTAGGC
261 TTCATCAACATCGGCCATTAGGC
* * *
83816863 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
*
83816928 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACATC
83816993 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
131 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
*
83817058 CATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
196 CATATATACACTTTCACATTCATCACATCGACCATTAGGCCTTATCACATATATA
83817113 TACATTCAAC
Statistics
Matches: 236, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
283 236 1.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (283 bp):
CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
CATATATACACTTTCACATTCATCACATCGACCATTAGGCCTTATCACATATATACACTTTCACA
TTCATCAACATCGGCCATTAGGC
Found at i:83820773 original size:39 final size:40
Alignment explanation
Indices: 83820628--83820853 Score: 323
Period size: 40 Copynumber: 5.7 Consensus size: 40
83820618 CCAGCATGAT
* * * *
83820628 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** * * *
83820668 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
83820708 TGCTCTTTGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
83820748 TGCTCTTC-GGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
83820787 TGCTCTTC-GGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
83820826 TGCTCTTCGGGACTTAGCCCGGAT-CATC
1 TGCTCTTCGGGACTTAGCCCGGATACATC
83820854 GTCGAGACCT
Statistics
Matches: 167, Mismatches: 18, Indels: 3
0.89 0.10 0.02
Matches are distributed among these distances:
39 80 0.48
40 87 0.52
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:83820793 original size:79 final size:79
Alignment explanation
Indices: 83820628--83820853 Score: 321
Period size: 79 Copynumber: 2.9 Consensus size: 79
83820618 CCAGCATGAT
* * * * ** *
83820628 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATA
1 TGCTCTTC-GGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
*
83820693 TATCACTAGCACAAA
65 CATCACTAGCACAAA
* *
83820708 TGCTCTTTGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTC-GGACTTAGCCCGGATA
1 TGCTCTTCGG-ACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
*
83820772 CATCACTAGCACGAA
65 CATCACTAGCACAAA
83820787 TGCTCTTCGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT-C
1 TGCTCTTCGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAC
83820851 ATC
66 ATC
83820854 GTCGAGACCT
Statistics
Matches: 131, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
78 40 0.31
79 52 0.40
80 39 0.30
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (79 bp):
TGCTCTTCGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAC
ATCACTAGCACAAA
Found at i:83820954 original size:37 final size:37
Alignment explanation
Indices: 83820907--83820980 Score: 105
Period size: 37 Copynumber: 2.0 Consensus size: 37
83820897 GAATTTTAAT
*
83820907 CCGGACATAATCTCTGT-ACATAGCCATCGGGTCTTTA
1 CCGGACATAATCTCT-TCACATAGCCAGCGGGTCTTTA
* *
83820944 CCGGACATAATCTCTTCATATAGTCAGCGGGTCTTTA
1 CCGGACATAATCTCTTCACATAGCCAGCGGGTCTTTA
83820981 AACTCGGATT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
36 1 0.03
37 32 0.97
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.31
Consensus pattern (37 bp):
CCGGACATAATCTCTTCACATAGCCAGCGGGTCTTTA
Found at i:83823176 original size:47 final size:47
Alignment explanation
Indices: 83823098--83823677 Score: 1009
Period size: 47 Copynumber: 12.3 Consensus size: 47
83823088 CCCTTCGGGA
* * * * * *
83823098 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
83823145 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
83823192 CTCATCACATATATACACTTTCACATTCATCACATCGG-CATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83823238 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
83823285 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83823334 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83823381 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
83823428 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83823475 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83823522 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
83823569 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83823616 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83823663 CTTATCACATATATA
1 CTTATCACATATATA
83823678 TACATTCAGA
Statistics
Matches: 508, Mismatches: 22, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
46 45 0.09
47 418 0.82
49 45 0.09
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:83832016 original size:49 final size:48
Alignment explanation
Indices: 83831961--83832188 Score: 240
Period size: 49 Copynumber: 4.6 Consensus size: 48
83831951 TACGCATAGC
* *
83831961 AGCCTGCACTCAGTACTACACATGCGACCAATTATCCAGTACACGTAGT
1 AGCCTGCACTTAGTACTACACACGCGACCAATTAT-CAGTACACGTAGT
* ** *
83832010 AGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGT
1 AGCCTGCACTTAGTACTACACACGCGACC-AATTATCAG-TACACGTAGT
* * * * * *
83832060 AGCCTGCACTCAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAGT
1 AGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATC-AGTACACGTAGT
* *
83832111 AGCCTGCACTTAGTACCACACATGCGACCAATTATCAGGTACACGTAGT
1 AGCCTGCACTTAGTACTACACACGCGACCAATTATCA-GTACACGTAGT
* * *
83832160 AGCCTACACTTAATACTACACACGTGACC
1 AGCCTGCACTTAGTACTACACACGCGACC
83832189 TCACAATAGA
Statistics
Matches: 147, Mismatches: 26, Indels: 12
0.79 0.14 0.06
Matches are distributed among these distances:
49 66 0.45
50 45 0.31
51 35 0.24
52 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (48 bp):
AGCCTGCACTTAGTACTACACACGCGACCAATTATCAGTACACGTAGT
Found at i:83833910 original size:15 final size:17
Alignment explanation
Indices: 83833892--83833923 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
83833882 TAGCATAATT
83833892 TACCAAA-TCA-ATTCA
1 TACCAAAGTCACATTCA
83833907 TACCAAAGTCACATTCA
1 TACCAAAGTCACATTCA
83833924 CAAGTATCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.44, C:0.28, G:0.03, T:0.25
Consensus pattern (17 bp):
TACCAAAGTCACATTCA
Found at i:83837459 original size:28 final size:27
Alignment explanation
Indices: 83837391--83837482 Score: 100
Period size: 28 Copynumber: 3.4 Consensus size: 27
83837381 GATATGACAT
* *
83837391 TGTGCTAAGTGAAATAAGACCATGGCA
1 TGTGCTAAGTGAAATAAGTCCATGGAA
*
83837418 --T-CTAAGTGAAATAAGTCCACGGTAA
1 TGTGCTAAGTGAAATAAGTCCATGG-AA
*
83837443 TGTGCTAAGTGAAATAAGTCCATGGCAT
1 TGTGCTAAGTGAAATAAGTCCATGG-AA
*
83837471 TGTGCTACGTGA
1 TGTGCTAAGTGA
83837483 GAAATTTCCC
Statistics
Matches: 54, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
24 19 0.35
25 2 0.04
27 1 0.02
28 32 0.59
ACGTcount: A:0.34, C:0.15, G:0.25, T:0.26
Consensus pattern (27 bp):
TGTGCTAAGTGAAATAAGTCCATGGAA
Found at i:83837582 original size:51 final size:50
Alignment explanation
Indices: 83837506--83837652 Score: 213
Period size: 51 Copynumber: 2.9 Consensus size: 50
83837496 TGAACCTTAG
* *
83837506 GAATAAACTAGCTTTGGACAGAAGTGTGGTACTATGTGAAGGCCACTTTGT
1 GAATAAA-TAGCTTTGGATACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* *
83837557 GAATATAATAGCTTTGGATACAAGTGTGGTACTGTGTGAAAGCCACTTTGT
1 GAATA-AATAGCTTTGGATACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* *
83837608 GAATAAAATAGCTTTGGCTACAAGGGTGGTACTATGTGAAGGCCA
1 GAAT-AAATAGCTTTGGATACAAGTGTGGTACTATGTGAAGGCCA
83837653 TCATGTATCC
Statistics
Matches: 86, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
51 83 0.97
52 3 0.03
ACGTcount: A:0.31, C:0.13, G:0.27, T:0.29
Consensus pattern (50 bp):
GAATAAATAGCTTTGGATACAAGTGTGGTACTATGTGAAGGCCACTTTGT
Found at i:83841599 original size:48 final size:48
Alignment explanation
Indices: 83841479--83841794 Score: 345
Period size: 48 Copynumber: 6.6 Consensus size: 48
83841469 TGAGATTCCA
* * * * **
83841479 TGTAAGACCATGTCAGGGACATGGCATCAGC-ATCCGAGATAGGTGCTTG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGAT--GATATATGTGCCAG
* * * * * *
83841528 TGTAAGACCATGTCAGGGACATGGCATCGGCGTTAATATGTATGCCAA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCAG
*
83841576 TGTAAGACCATGTCTGGGACATGGCAAT-GACGATGATATATGTGCCAG
1 TGTAAGACCATGTCTGGGACATGGC-ATCGGCGATGATATATGTGCCAG
* *
83841624 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATGTATGTGGCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCAG
* * * *
83841672 TGTAAGATCATGTCCGGGACATGGCATCGACAATGATATATGTGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCAG
* * *
83841720 TGTAAGACCATGTCTTGGACATGGCATCAGCGATGATATATG-GATTCA-
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTG--CCAG
83841768 TGTAAGACCATGT-TGGGGACATGGCAT
1 TGTAAGACCATGTCT-GGGACATGGCAT
83841795 TGGTACTTTA
Statistics
Matches: 227, Mismatches: 34, Indels: 13
0.83 0.12 0.05
Matches are distributed among these distances:
47 4 0.02
48 188 0.83
49 34 0.15
50 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCAG
Found at i:83844684 original size:41 final size:44
Alignment explanation
Indices: 83844566--83844699 Score: 134
Period size: 45 Copynumber: 3.1 Consensus size: 44
83844556 TAGGATTTTT
* *
83844566 TATATGTGTTCTCGTGTAAGACCAC-GTCTGGGACATTGGCATCGA
1 TATATGTGAT-TCGTGTAAGACC-CTGTCTGGGACATCGGCATCGA
* * *
83844611 TATATGTGGTTATGTGTAAGACCATGTCTGGGACATCGGCATCG-
1 TATATGTGATT-CGTGTAAGACCCTGTCTGGGACATCGGCATCGA
* *
83844655 TAT-T-TGATTCGTGTAAGACCCTGTTTGGGACAGT-GGCAACGA
1 TATATGTGATTCGTGTAAGACCCTGTCTGGGACA-TCGGCATCGA
83844697 TAT
1 TAT
83844700 TAAATAGCAT
Statistics
Matches: 76, Mismatches: 9, Indels: 11
0.79 0.09 0.11
Matches are distributed among these distances:
41 26 0.34
42 8 0.11
43 1 0.01
44 4 0.05
45 37 0.49
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.32
Consensus pattern (44 bp):
TATATGTGATTCGTGTAAGACCCTGTCTGGGACATCGGCATCGA
Found at i:83845971 original size:16 final size:18
Alignment explanation
Indices: 83845950--83845982 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
83845940 CATACAGGCT
83845950 CCAAAAT-ATAG-TAGTA
1 CCAAAATGATAGATAGTA
83845966 CCAAAATGATAGATAGT
1 CCAAAATGATAGATAGT
83845983 GTGACGAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 4 0.27
18 4 0.27
ACGTcount: A:0.48, C:0.12, G:0.15, T:0.24
Consensus pattern (18 bp):
CCAAAATGATAGATAGTA
Found at i:83846660 original size:44 final size:43
Alignment explanation
Indices: 83846524--83846686 Score: 152
Period size: 43 Copynumber: 3.7 Consensus size: 43
83846514 CCGGCATTTC
* * * *
83846524 GCCTGCTAGGCTTGAAGCCC-GATA-TCATTTCACCGGCATTATA
1 GCCTGCTAGGCTCGAAGCCCAAATAGT-ATCTCA-CAGCATTATA
* * * *
83846567 GCCTGCTACGCTCGATGGCCCGAATAGTATCTCACCAGCATT-TT
1 GCCTGCTAGGCTCGA-AGCCCAAATAGTATCTCA-CAGCATTATA
* *
83846611 TCCTGCTAGGCTCGAAGCCCAAATAGTATCTCACTGCCATTATA
1 GCCTGCTAGGCTCGAAGCCCAAATAGTATCTCACAG-CATTATA
*
83846655 GCCTGCTAGGCTCAAAGGCCCAAATAGTATCT
1 GCCTGCTAGGCTCGAA-GCCCAAATAGTATCT
83846687 TACCGGTATT
Statistics
Matches: 99, Mismatches: 15, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
42 2 0.02
43 33 0.33
44 33 0.33
45 30 0.30
46 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (43 bp):
GCCTGCTAGGCTCGAAGCCCAAATAGTATCTCACAGCATTATA
Found at i:83846685 original size:88 final size:87
Alignment explanation
Indices: 83846511--83846728 Score: 249
Period size: 88 Copynumber: 2.5 Consensus size: 87
83846501 CCAAATTCAT
* * * *
83846511 TCACCGGCATTTCGCCTGCTAGGCTTGAAGCCCGATA-TCATTTCACCGGCATTATAGCCTGCTA
1 TCACCGGCATTTCGCCTGCTAGGCTCGAAGCCCAATAGT-ATCTCACCGCCATTATAGCCTGCTA
* * *
83846575 CGCTCGATGGCCCGAATAGTATC
65 CGCTCAAAGGCCCAAATAGTATC
* ** *
83846598 TCACCAGCATTTTTCCTGCTAGGCTCGAAGCCCAAATAGTATCTCACTGCCATTATAGCCTGCTA
1 TCACCGGCATTTCGCCTGCTAGGCTCGAAGCCC-AATAGTATCTCACCGCCATTATAGCCTGCTA
*
83846663 GGCTCAAAGGCCCAAATAGTATC
65 CGCTCAAAGGCCCAAATAGTATC
* * * *
83846686 TTACCGGTATTTCGCCTGTTAGGCTCAAAGGCCCGAATAGTAT
1 TCACCGGCATTTCGCCTGCTAGGCTCGAA-GCCC-AATAGTAT
83846729 TGTATGATAT
Statistics
Matches: 108, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
87 29 0.27
88 66 0.61
89 13 0.12
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (87 bp):
TCACCGGCATTTCGCCTGCTAGGCTCGAAGCCCAATAGTATCTCACCGCCATTATAGCCTGCTAC
GCTCAAAGGCCCAAATAGTATC
Found at i:83846703 original size:44 final size:44
Alignment explanation
Indices: 83846469--83846728 Score: 210
Period size: 44 Copynumber: 6.0 Consensus size: 44
83846459 TTTTATCCAA
* * * **
83846469 TCACCGGCATTCAGCCTGCTAGGTTTAAAAACCCAAAT--TCAT-
1 TCACCGGCATTTAGCCTGCTAGGCTCAAAGGCCCAAATAGT-ATC
* ** * *
83846511 TCACCGGCATTTCGCCTGCTAGGCTTGAA-GCCC-GATA-TCATT
1 TCACCGGCATTTAGCCTGCTAGGCTCAAAGGCCCAAATAGT-ATC
* * * *
83846553 TCACCGGCATTATAGCCTGCTACGCTCGATGGCCCGAATAGTATC
1 TCACCGGCATT-TAGCCTGCTAGGCTCAAAGGCCCAAATAGTATC
* ** *
83846598 TCACCAGCATTTTTCCTGCTAGGCTCGAA-GCCCAAATAGTATC
1 TCACCGGCATTTAGCCTGCTAGGCTCAAAGGCCCAAATAGTATC
* *
83846641 TCACTGCCATTATAGCCTGCTAGGCTCAAAGGCCCAAATAGTATC
1 TCACCGGCATT-TAGCCTGCTAGGCTCAAAGGCCCAAATAGTATC
* * * * *
83846686 TTACCGGTATTTCGCCTGTTAGGCTCAAAGGCCCGAATAGTAT
1 TCACCGGCATTTAGCCTGCTAGGCTCAAAGGCCCAAATAGTAT
83846729 TGTATGATAT
Statistics
Matches: 179, Mismatches: 31, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
40 2 0.01
41 7 0.04
42 36 0.20
43 35 0.20
44 62 0.35
45 36 0.20
46 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (44 bp):
TCACCGGCATTTAGCCTGCTAGGCTCAAAGGCCCAAATAGTATC
Done.