Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 244 of 295
Found at i:83847587 original size:47 final size:47
Alignment explanation
Indices: 83847531--83847673 Score: 250
Period size: 47 Copynumber: 3.0 Consensus size: 47
83847521 AAAATTTTCT
* * *
83847531 TTAACTAAGTAACTTATTCGGAAATGTTAAGAGCAAATTTAACAAGC
1 TTAACTAAGTAACTTGTCCGGAAATATTAAGAGCAAATTTAACAAGC
83847578 TTAACTAAGTAACTTGTCCGGAAATATTAAGAGCAAATTTAACAAGC
1 TTAACTAAGTAACTTGTCCGGAAATATTAAGAGCAAATTTAACAAGC
*
83847625 TTAACTAAGTAACTTGTCCAGAAATATTAAGAGCAAATTTAACAAGC
1 TTAACTAAGTAACTTGTCCGGAAATATTAAGAGCAAATTTAACAAGC
83847672 TT
1 TT
83847674 TAAATTCAAC
Statistics
Matches: 92, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 92 1.00
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (47 bp):
TTAACTAAGTAACTTGTCCGGAAATATTAAGAGCAAATTTAACAAGC
Found at i:83852015 original size:41 final size:44
Alignment explanation
Indices: 83851897--83852030 Score: 134
Period size: 45 Copynumber: 3.1 Consensus size: 44
83851887 TAGGATTTTT
* *
83851897 TATATGTGTTCTCGTGTAAGACCAC-GTCTGGGACATTGGCATCGA
1 TATATGTGAT-TCGTGTAAGACC-CTGTCTGGGACATCGGCATCGA
* * *
83851942 TATATGTGGTTATGTGTAAGACCATGTCTGGGACATCGGCATCG-
1 TATATGTGATT-CGTGTAAGACCCTGTCTGGGACATCGGCATCGA
* *
83851986 TAT-T-TGATTCGTGTAAGACCCTGTTTGGGACAGT-GGCAACGA
1 TATATGTGATTCGTGTAAGACCCTGTCTGGGACA-TCGGCATCGA
83852028 TAT
1 TAT
83852031 TAAATAGCAT
Statistics
Matches: 76, Mismatches: 9, Indels: 11
0.79 0.09 0.11
Matches are distributed among these distances:
41 26 0.34
42 8 0.11
43 1 0.01
44 4 0.05
45 37 0.49
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.32
Consensus pattern (44 bp):
TATATGTGATTCGTGTAAGACCCTGTCTGGGACATCGGCATCGA
Found at i:83853302 original size:16 final size:18
Alignment explanation
Indices: 83853281--83853313 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
83853271 CATACAGGCT
83853281 CCAAAAT-ATAG-TAGTA
1 CCAAAATGATAGATAGTA
83853297 CCAAAATGATAGATAGT
1 CCAAAATGATAGATAGT
83853314 GTGACGAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 4 0.27
18 4 0.27
ACGTcount: A:0.48, C:0.12, G:0.15, T:0.24
Consensus pattern (18 bp):
CCAAAATGATAGATAGTA
Found at i:83853991 original size:44 final size:43
Alignment explanation
Indices: 83853855--83854017 Score: 152
Period size: 43 Copynumber: 3.7 Consensus size: 43
83853845 CCGGCATTTC
* * * *
83853855 GCCTGCTAGGCTTGAAGCCC-GATA-TCATTTCACCGGCATTATA
1 GCCTGCTAGGCTCGAAGCCCAAATAGT-ATCTCA-CAGCATTATA
* * * *
83853898 GCCTGCTACGCTCGATGGCCCGAATAGTATCTCACCAGCATT-TT
1 GCCTGCTAGGCTCGA-AGCCCAAATAGTATCTCA-CAGCATTATA
* *
83853942 TCCTGCTAGGCTCGAAGCCCAAATAGTATCTCACTGCCATTATA
1 GCCTGCTAGGCTCGAAGCCCAAATAGTATCTCACAG-CATTATA
*
83853986 GCCTGCTAGGCTCAAAGGCCCAAATAGTATCT
1 GCCTGCTAGGCTCGAA-GCCCAAATAGTATCT
83854018 TACCGGTATT
Statistics
Matches: 99, Mismatches: 15, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
42 2 0.02
43 33 0.33
44 33 0.33
45 30 0.30
46 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (43 bp):
GCCTGCTAGGCTCGAAGCCCAAATAGTATCTCACAGCATTATA
Found at i:83854016 original size:88 final size:87
Alignment explanation
Indices: 83853842--83854059 Score: 249
Period size: 88 Copynumber: 2.5 Consensus size: 87
83853832 CCAAATTCAT
* * * *
83853842 TCACCGGCATTTCGCCTGCTAGGCTTGAAGCCCGATA-TCATTTCACCGGCATTATAGCCTGCTA
1 TCACCGGCATTTCGCCTGCTAGGCTCGAAGCCCAATAGT-ATCTCACCGCCATTATAGCCTGCTA
* * *
83853906 CGCTCGATGGCCCGAATAGTATC
65 CGCTCAAAGGCCCAAATAGTATC
* ** *
83853929 TCACCAGCATTTTTCCTGCTAGGCTCGAAGCCCAAATAGTATCTCACTGCCATTATAGCCTGCTA
1 TCACCGGCATTTCGCCTGCTAGGCTCGAAGCCC-AATAGTATCTCACCGCCATTATAGCCTGCTA
*
83853994 GGCTCAAAGGCCCAAATAGTATC
65 CGCTCAAAGGCCCAAATAGTATC
* * * *
83854017 TTACCGGTATTTCGCCTGTTAGGCTCAAAGGCCCGAATAGTAT
1 TCACCGGCATTTCGCCTGCTAGGCTCGAA-GCCC-AATAGTAT
83854060 TGTATGATAT
Statistics
Matches: 108, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
87 29 0.27
88 66 0.61
89 13 0.12
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (87 bp):
TCACCGGCATTTCGCCTGCTAGGCTCGAAGCCCAATAGTATCTCACCGCCATTATAGCCTGCTAC
GCTCAAAGGCCCAAATAGTATC
Found at i:83854034 original size:44 final size:44
Alignment explanation
Indices: 83853800--83854059 Score: 210
Period size: 44 Copynumber: 6.0 Consensus size: 44
83853790 TTTTATCCAA
* * * **
83853800 TCACCGGCATTCAGCCTGCTAGGTTTAAAAACCCAAAT--TCAT-
1 TCACCGGCATTTAGCCTGCTAGGCTCAAAGGCCCAAATAGT-ATC
* ** * *
83853842 TCACCGGCATTTCGCCTGCTAGGCTTGAA-GCCC-GATA-TCATT
1 TCACCGGCATTTAGCCTGCTAGGCTCAAAGGCCCAAATAGT-ATC
* * * *
83853884 TCACCGGCATTATAGCCTGCTACGCTCGATGGCCCGAATAGTATC
1 TCACCGGCATT-TAGCCTGCTAGGCTCAAAGGCCCAAATAGTATC
* ** *
83853929 TCACCAGCATTTTTCCTGCTAGGCTCGAA-GCCCAAATAGTATC
1 TCACCGGCATTTAGCCTGCTAGGCTCAAAGGCCCAAATAGTATC
* *
83853972 TCACTGCCATTATAGCCTGCTAGGCTCAAAGGCCCAAATAGTATC
1 TCACCGGCATT-TAGCCTGCTAGGCTCAAAGGCCCAAATAGTATC
* * * * *
83854017 TTACCGGTATTTCGCCTGTTAGGCTCAAAGGCCCGAATAGTAT
1 TCACCGGCATTTAGCCTGCTAGGCTCAAAGGCCCAAATAGTAT
83854060 TGTATGATAT
Statistics
Matches: 179, Mismatches: 31, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
40 2 0.01
41 7 0.04
42 36 0.20
43 35 0.20
44 62 0.35
45 36 0.20
46 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (44 bp):
TCACCGGCATTTAGCCTGCTAGGCTCAAAGGCCCAAATAGTATC
Found at i:83854918 original size:47 final size:47
Alignment explanation
Indices: 83854862--83855004 Score: 250
Period size: 47 Copynumber: 3.0 Consensus size: 47
83854852 AAAATTTTCT
* * *
83854862 TTAACTAAGTAACTTATTCGGAAATGTTAAGAGCAAATTTAACAAGC
1 TTAACTAAGTAACTTGTCCGGAAATATTAAGAGCAAATTTAACAAGC
83854909 TTAACTAAGTAACTTGTCCGGAAATATTAAGAGCAAATTTAACAAGC
1 TTAACTAAGTAACTTGTCCGGAAATATTAAGAGCAAATTTAACAAGC
*
83854956 TTAACTAAGTAACTTGTCCAGAAATATTAAGAGCAAATTTAACAAGC
1 TTAACTAAGTAACTTGTCCGGAAATATTAAGAGCAAATTTAACAAGC
83855003 TT
1 TT
83855005 TAAATTCAAC
Statistics
Matches: 92, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 92 1.00
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (47 bp):
TTAACTAAGTAACTTGTCCGGAAATATTAAGAGCAAATTTAACAAGC
Found at i:83862288 original size:22 final size:22
Alignment explanation
Indices: 83862263--83862334 Score: 60
Period size: 22 Copynumber: 3.3 Consensus size: 22
83862253 ACTAAAAGAA
83862263 TCATATAGTTCATATACATTTC
1 TCATATAGTTCATATACATTTC
****
83862285 TCATAT--TTCCAATTATA-AAAAA
1 TCATATAGTT-C-A-TATACATTTC
83862307 TCATATAGTTCATATACATTTC
1 TCATATAGTTCATATACATTTC
83862329 TCATAT
1 TCATAT
83862335 TTCCAATTCA
Statistics
Matches: 36, Mismatches: 8, Indels: 12
0.64 0.14 0.21
Matches are distributed among these distances:
20 2 0.06
21 5 0.14
22 22 0.61
23 5 0.14
24 2 0.06
ACGTcount: A:0.38, C:0.17, G:0.03, T:0.43
Consensus pattern (22 bp):
TCATATAGTTCATATACATTTC
Found at i:83862310 original size:44 final size:46
Alignment explanation
Indices: 83862246--83862342 Score: 171
Period size: 44 Copynumber: 2.2 Consensus size: 46
83862236 ATGTTCCATA
*
83862246 TCCAAATACTAAAAGAATCATATAGTTCATATACATTTCTCATATT
1 TCCAATTACTAAAAGAATCATATAGTTCATATACATTTCTCATATT
83862292 TCCAATTA-TAAAA-AATCATATAGTTCATATACATTTCTCATATT
1 TCCAATTACTAAAAGAATCATATAGTTCATATACATTTCTCATATT
83862336 TCCAATT
1 TCCAATT
83862343 CATTTGCACA
Statistics
Matches: 50, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
44 38 0.76
45 5 0.10
46 7 0.14
ACGTcount: A:0.40, C:0.18, G:0.03, T:0.39
Consensus pattern (46 bp):
TCCAATTACTAAAAGAATCATATAGTTCATATACATTTCTCATATT
Found at i:83862475 original size:32 final size:32
Alignment explanation
Indices: 83862439--83862502 Score: 110
Period size: 32 Copynumber: 2.0 Consensus size: 32
83862429 TACTTTTCAA
83862439 ACGTACCTGAATTGCTATATATTCATTCTTTT
1 ACGTACCTGAATTGCTATATATTCATTCTTTT
* *
83862471 ACGTACTTGAATTGTTATATATTCATTCTTTT
1 ACGTACCTGAATTGCTATATATTCATTCTTTT
83862503 CTCTAAATGC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.25, C:0.16, G:0.09, T:0.50
Consensus pattern (32 bp):
ACGTACCTGAATTGCTATATATTCATTCTTTT
Found at i:83862688 original size:42 final size:43
Alignment explanation
Indices: 83862569--83862739 Score: 118
Period size: 43 Copynumber: 4.0 Consensus size: 43
83862559 AGCTCGTACA
** * *
83862569 ATGCCAACGTCCCAGACGTGGTCTTACA-TGTAACCAAATATCG
1 ATGCCAATATCCCAGACGTGGTCTTACACT-AAATCAAATATCG
* * *
83862612 ATGCCACTATCCCAGACAG-GATCTTACACGAAATCAAATA-CG
1 ATGCCAATATCCCAGAC-GTGGTCTTACACTAAATCAAATATCG
* * * *
83862654 ATGCTAATGT-CCAGACGTGGTCTTACACATAAATCATAA-GTCA
1 ATGCCAATATCCCAGACGTGGTCTTACAC-TAAATCA-AATATCG
** * * * *
83862697 ATGCCAACGTCCCAGACGTGATCATACACGAAATCACATATCG
1 ATGCCAATATCCCAGACGTGGTCTTACACTAAATCAAATATCG
83862740 GATCCTATGT
Statistics
Matches: 98, Mismatches: 22, Indels: 16
0.72 0.16 0.12
Matches are distributed among these distances:
40 1 0.01
41 15 0.15
42 16 0.16
43 49 0.50
44 17 0.17
ACGTcount: A:0.35, C:0.27, G:0.16, T:0.22
Consensus pattern (43 bp):
ATGCCAATATCCCAGACGTGGTCTTACACTAAATCAAATATCG
Found at i:83866742 original size:15 final size:15
Alignment explanation
Indices: 83866722--83866752 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
83866712 AAGCTCCAGT
83866722 GTTAGTTTAACCTGA
1 GTTAGTTTAACCTGA
83866737 GTTAGTTTAACCTGA
1 GTTAGTTTAACCTGA
83866752 G
1 G
83866753 CCGGGAAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (15 bp):
GTTAGTTTAACCTGA
Found at i:83869934 original size:48 final size:48
Alignment explanation
Indices: 83869818--83870132 Score: 300
Period size: 48 Copynumber: 6.5 Consensus size: 48
83869808 ATGAGATTCC
* * *
83869818 GTGTAAGACCATGTCTAGGACATGGCATCAGC-ATCCGAGATA-G-GTGCCT
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGAT---A-ATATGTGTGCCA
* *
83869867 GTGTAAGACCATGTTTGGGACATGGCATCGGCGATAATATGTATGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATAATATGTGTGCCA
* * *
83869915 GTGTAAGACCATGTCTGGGACATGGCAAT-GACGATGATATATGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGC-ATCGGCGATAATATGTGTGCCA
* * * * * *
83869963 GTGTAAGACCATGTTTGGGACATGGCATTCGACGATGATGTATGTGCTA
1 GTGTAAGACCATGTCTGGGACATGGCA-TCGGCGATAATATGTGTGCCA
* * * *
83870012 GTGTAAGACCATGTCTGGGACATGGCATCGGTGATGACATATGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATAATATGTGTGCCA
* * * * *
83870060 GTGTAAGATCATGTCTGGGACATGGCATCTGCGATGATTTGTG-GATTCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATAATATGTGTG--CCA
*
83870109 -TGTAAGACCATGTCGGGGACATGG
1 GTGTAAGACCATGTCTGGGACATGG
83870133 TATTGGTACT
Statistics
Matches: 230, Mismatches: 28, Indels: 17
0.84 0.10 0.06
Matches are distributed among these distances:
46 3 0.01
47 4 0.02
48 145 0.63
49 76 0.33
50 2 0.01
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.27
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGCGATAATATGTGTGCCA
Found at i:83870017 original size:97 final size:91
Alignment explanation
Indices: 83869818--83870132 Score: 335
Period size: 97 Copynumber: 3.3 Consensus size: 91
83869808 ATGAGATTCC
* * * * *
83869818 GTGTAAGACCATGTCTAGGACATGGCATCAGCATCCGAGATAGGTGCCTGTGTAAGACCATGTTT
1 GTGTAAGACCATGTCTGGGACATGGCATGAG-AT--GACATATGTGCCAGTGTAAGACCATGTTT
* * *
83869883 GGGACATGGCATCGGCGATAATATGTATGCCA
63 GGGACATGGCATC-GCGATGAT-T-TGTGCTA
*
83869915 GTGTAAGACCATGTCTGGGACATGGCAATGACGATGATATATGTGCCAGTGTAAGACCATGTTTG
1 GTGTAAGACCATGTCTGGGACATGGC-ATGA-GATGACATATGTGCCAGTGTAAGACCATGTTTG
83869980 GGACATGGCATTCGACGATGATGTATGTGCTA
64 GGACATGGCA-TCG-CGATGAT-T-TGTGCTA
* * *
83870012 GTGTAAGACCATGTCTGGGACATGGCATCGGTGATGACATATGTGCCAGTGTAAGATCATGTCTG
1 GTGTAAGACCATGTCTGGGACATGGCAT--GAGATGACATATGTGCCAGTGTAAGACCATGTTTG
*
83870077 GGACATGGCATCTGCGATGATTTGTGGATTCA
64 GGACATGGCATC-GCGATGATTTGT-G-CT-A
*
83870109 -TGTAAGACCATGTCGGGGACATGG
1 GTGTAAGACCATGTCTGGGACATGG
83870133 TATTGGTACT
Statistics
Matches: 192, Mismatches: 16, Indels: 21
0.84 0.07 0.09
Matches are distributed among these distances:
94 3 0.02
95 2 0.01
96 73 0.38
97 107 0.56
98 6 0.03
99 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.27
Consensus pattern (91 bp):
GTGTAAGACCATGTCTGGGACATGGCATGAGATGACATATGTGCCAGTGTAAGACCATGTTTGGG
ACATGGCATCGCGATGATTTGTGCTA
Found at i:83870113 original size:145 final size:144
Alignment explanation
Indices: 83869867--83870132 Score: 371
Period size: 145 Copynumber: 1.8 Consensus size: 144
83869857 ATAGGTGCCT
*
83869867 GTGTAAGACCATGTTTGGGACATGGCATCGGCGATAATATGTATGCCAGTGTAAGACCATGTCTG
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATAATATG-ATGCCAGTGTAAGACCATGTCTG
**
83869932 GGACATGGCAATGACGATGATATATGTGCCAGTGTAAGACCATGTTTGGGACATGGCATTCGACG
65 GGACATGGCAATGACGATGATATATGTGCCAGTGTAAGACCATGTCGGGGACATGGCATTCGACG
83869997 ATGATGTATGTGCTA
130 ATGATGTATGTGCTA
* *
83870012 GTGTAAGACCATGTCTGGGACATGGCATCGGTGATGACATATG-TGCCAGTGTAAGATCATGTCT
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGAT-A-ATATGATGCCAGTGTAAGACCATGTCT
* *
83870076 GGGACATGGCATCTG-CGATGAT-T-TGTGGATTCA-TGTAAGACCATGTCGGGGACATGG
64 GGGACATGGCA-ATGACGATGATATATGT-G--CCAGTGTAAGACCATGTCGGGGACATGG
83870133 TATTGGTACT
Statistics
Matches: 108, Mismatches: 7, Indels: 12
0.85 0.06 0.09
Matches are distributed among these distances:
143 3 0.03
144 2 0.02
145 93 0.86
146 5 0.05
147 5 0.05
ACGTcount: A:0.26, C:0.16, G:0.31, T:0.27
Consensus pattern (144 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGCGATAATATGATGCCAGTGTAAGACCATGTCTGG
GACATGGCAATGACGATGATATATGTGCCAGTGTAAGACCATGTCGGGGACATGGCATTCGACGA
TGATGTATGTGCTA
Found at i:83871397 original size:33 final size:33
Alignment explanation
Indices: 83871360--83871429 Score: 140
Period size: 33 Copynumber: 2.1 Consensus size: 33
83871350 GGTAGATAAG
83871360 GAAGGGATTGGATTATTGCCTTTATGTTTTGAT
1 GAAGGGATTGGATTATTGCCTTTATGTTTTGAT
83871393 GAAGGGATTGGATTATTGCCTTTATGTTTTGAT
1 GAAGGGATTGGATTATTGCCTTTATGTTTTGAT
83871426 GAAG
1 GAAG
83871430 AATTGTTGAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.23, C:0.06, G:0.29, T:0.43
Consensus pattern (33 bp):
GAAGGGATTGGATTATTGCCTTTATGTTTTGAT
Found at i:83872625 original size:38 final size:36
Alignment explanation
Indices: 83872579--83872682 Score: 145
Period size: 38 Copynumber: 2.8 Consensus size: 36
83872569 AGGCTTAAAG
*
83872579 ATCCGCAGGCTATATGCTGGTATTATATCCGTGTTAA
1 ATCCGCAGGCT-TATGCTGGTATTATATCCGGGTTAA
*
83872616 ATCCTGCAGGCTTCGTGCTGGTATTATATCCGGGTTAA
1 ATCC-GCAGGCTT-ATGCTGGTATTATATCCGGGTTAA
83872654 ATCCCGCAGGCTTAGTGCTGGTATTATAT
1 AT-CCGCAGGCTTA-TGCTGGTATTATAT
83872683 TCGAGCTTAA
Statistics
Matches: 60, Mismatches: 3, Indels: 7
0.86 0.04 0.10
Matches are distributed among these distances:
37 5 0.08
38 53 0.88
39 2 0.03
ACGTcount: A:0.21, C:0.20, G:0.24, T:0.35
Consensus pattern (36 bp):
ATCCGCAGGCTTATGCTGGTATTATATCCGGGTTAA
Found at i:83880445 original size:49 final size:49
Alignment explanation
Indices: 83880373--83880560 Score: 234
Period size: 49 Copynumber: 3.8 Consensus size: 49
83880363 TGAGGTAACG
*
83880373 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
* ** * * * *
83880422 TGTGTAGTACTAAGTGCAGGCTACTATGCATACCCA-AAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCAGATAA-T-TGGTCGCA
* *
83880473 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGACGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
* *
83880522 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
83880561 GCTTCGGCTA
Statistics
Matches: 115, Mismatches: 20, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
49 72 0.63
50 7 0.06
51 36 0.31
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
Found at i:83880543 original size:100 final size:100
Alignment explanation
Indices: 83880370--83880555 Score: 336
Period size: 100 Copynumber: 1.9 Consensus size: 100
83880360 TTGTGAGGTA
* *
83880370 ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACTAA
1 ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGACGCATGTGTAGTACTAA
83880435 GTGCAGGCTACTATGCATACCCAAAAACTGTGATC
66 GTGCAGGCTACTATGCATACCCAAAAACTGTGATC
*
83880470 ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGACGCATGTGTAGTACTAA
1 ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGACGCATGTGTAGTACTAA
*
83880535 GTGCAGGCTACTATGCGTACC
66 GTGCAGGCTACTATGCATACC
83880556 AGATAGCTTC
Statistics
Matches: 82, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
100 82 1.00
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (100 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGACGCATGTGTAGTACTAA
GTGCAGGCTACTATGCATACCCAAAAACTGTGATC
Found at i:83883930 original size:49 final size:49
Alignment explanation
Indices: 83883877--83884058 Score: 238
Period size: 49 Copynumber: 3.7 Consensus size: 49
83883867 CTGGTACGCA
* *
83883877 TAGTAGGCTGCACATAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
* *
83883926 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
* * * * ** * *
83883975 TAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTAGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAATTATCCGGTACACG
83884026 TAGTAGCCTGCACTTAGTACTACACATGCGACC
1 TAGTAGCCTGCACTTAGTACTACACATGCGACC
83884059 TCACAATAGA
Statistics
Matches: 117, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
49 76 0.65
50 2 0.02
51 39 0.33
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
Found at i:83888517 original size:30 final size:30
Alignment explanation
Indices: 83888469--83888528 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
83888459 TTCTCGAGCC
83888469 TAGGGGAAAAAGTATAATTATGCAAAAGTT
1 TAGGGGAAAAAGTATAATTATGCAAAAGTT
* * *
83888499 TAGGGGCAAAAA-TGTAATTTTGCCAAAGTT
1 TAGGGG-AAAAAGTATAATTATGCAAAAGTT
83888529 CGTATTAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.42, C:0.07, G:0.23, T:0.28
Consensus pattern (30 bp):
TAGGGGAAAAAGTATAATTATGCAAAAGTT
Found at i:83903001 original size:46 final size:45
Alignment explanation
Indices: 83902895--83903112 Score: 174
Period size: 46 Copynumber: 4.7 Consensus size: 45
83902885 TATCTGTGCT
*
83902895 GATGCCATGTCCCAGACATCGTCTTACACT-GAC-ACATCTCGTA-GCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAG-CTTCATCTCG-AGGCC
* * *
83902941 GGTGCATGTTCCAGACATGTCTTACACTAGCTTACGTCTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTT-CATCTCGAGGCC
* * * * **
83902987 GATGCATATCCCAGACATGTCTTACACTAGCACTCGTCTCAATACC
1 GATGCATGTCCCAGACATGTCTTACACTAGC-TTCATCTCGAGGCC
* * * ** *
83903033 GATGCCATGTCCCCGACATGGTCTTACACTGGCTCTCATAAT-TTGGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCT-TCAT-CTCGAGGCC
83903081 GATGCATGTCCCAGACATGTCTTACACTAGCT
1 GATGCATGTCCCAGACATGTCTTACACTAGCT
83903113 CACACAAGTG
Statistics
Matches: 139, Mismatches: 24, Indels: 18
0.77 0.13 0.10
Matches are distributed among these distances:
44 11 0.08
45 15 0.11
46 66 0.47
47 26 0.19
48 20 0.14
49 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.28
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTTCATCTCGAGGCC
Found at i:83903535 original size:30 final size:30
Alignment explanation
Indices: 83903456--83903537 Score: 146
Period size: 30 Copynumber: 2.7 Consensus size: 30
83903446 TATCTTTGGT
*
83903456 AAAATGACCATTTTGCCCATAGACTTTAAC
1 AAAATGACCATTTTGCCCCTAGACTTTAAC
83903486 AAAATGACCATTTTGCCCCTAGACTTTAAC
1 AAAATGACCATTTTGCCCCTAGACTTTAAC
*
83903516 AAAATGACCATTTTACCCCTAG
1 AAAATGACCATTTTGCCCCTAG
83903538 GCCCGAAAAT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 50 1.00
ACGTcount: A:0.35, C:0.26, G:0.10, T:0.29
Consensus pattern (30 bp):
AAAATGACCATTTTGCCCCTAGACTTTAAC
Found at i:83910649 original size:49 final size:46
Alignment explanation
Indices: 83910577--83910695 Score: 145
Period size: 49 Copynumber: 2.6 Consensus size: 46
83910567 AAACATCGAC
* *
83910577 GCCATGTCCCAGACATGGTCTTACACAAGTATAGTATATCTGT-GCCGAT
1 GCCATGTCCCAGACATGGTCTTACAC-AG-ACA-CATAT-TGTAGCCGAT
* *
83910626 GCCATGTCCCAGACATGGTCTTACACTGACACATCTTGTAGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACAGACACATATTGTAGCCGAT
83910672 G-CATGTCCCAGACAT-GTCTTACAC
1 GCCATGTCCCAGACATGGTCTTACAC
83910696 TAGCTTACGT
Statistics
Matches: 65, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
44 9 0.14
45 17 0.26
46 10 0.15
47 2 0.03
48 1 0.02
49 26 0.40
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (46 bp):
GCCATGTCCCAGACATGGTCTTACACAGACACATATTGTAGCCGAT
Found at i:83910753 original size:46 final size:46
Alignment explanation
Indices: 83910620--83910839 Score: 182
Period size: 46 Copynumber: 4.7 Consensus size: 46
83910610 GTATATCTGT
* * *
83910620 GCCGATGCCATGTCCCAGACATGGTCTTACACT-G-ACACATCTTGTA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCGTCTCGTA
*
83910666 GCCGATGCATGTCCCAGACATGTCTTACACTAGC-TTACGTCTCG-A
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCACT-CGTCTCGTA
* * *
83910711 GGCTGATGCGTGTCCCAGACATGTCTTACACTAGCACTCGTCTCAATA
1 -GCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTC-GTA
* * * * * * *
83910759 -TCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAAT-GTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCGT-CTCGTA
* *
83910806 GCCGATGCATGTCCTAGACATGTCTTACCCTAGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC
83910840 TCACACAAGT
Statistics
Matches: 140, Mismatches: 23, Indels: 22
0.76 0.12 0.12
Matches are distributed among these distances:
44 10 0.07
45 16 0.11
46 65 0.46
47 26 0.19
48 22 0.16
49 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCGTA
Found at i:83921898 original size:43 final size:42
Alignment explanation
Indices: 83921851--83921983 Score: 110
Period size: 42 Copynumber: 3.1 Consensus size: 42
83921841 CCTTGATTAA
*
83921851 GATTTAAGTATAAGACCATGTCCGGGACATCGGCATTGTATCT
1 GATTTAAGTGTAAGACCATGTCCGGGACATCGGCATTGTAT-T
* * * ** *
83921894 GATTT-TGTGTAAGACCTTGTCTGGGACAAAGGCATCGATATT
1 GATTTAAGTGTAAGACCATGTCCGGGACATCGGCATTG-TATT
* * * *
83921936 GAATTACA-TGTAAGACCATGTCCGAGACGTCGGCGTTGTACTT
1 GATTTA-AGTGTAAGACCATGTCCGGGACATCGGCATTGTA-TT
83921979 G-TTTA
1 GATTTA
83921984 CGAGTATCTG
Statistics
Matches: 68, Mismatches: 18, Indels: 9
0.72 0.19 0.09
Matches are distributed among these distances:
42 35 0.51
43 33 0.49
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (42 bp):
GATTTAAGTGTAAGACCATGTCCGGGACATCGGCATTGTATT
Found at i:83949368 original size:13 final size:14
Alignment explanation
Indices: 83949343--83949371 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
83949333 TGATGAATTG
83949343 AATTAAACAATTAT
1 AATTAAACAATTAT
83949357 AATTAAAC-ATTAT
1 AATTAAACAATTAT
83949370 AA
1 AA
83949372 ATATTTAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACAATTAT
Found at i:83949575 original size:16 final size:17
Alignment explanation
Indices: 83949538--83949576 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
83949528 AAAATATTAT
*
83949538 TTAATATTAGAAAGTTA
1 TTAATATTAGAAAGTAA
*
83949555 TTAATATTTGAAAG-AA
1 TTAATATTAGAAAGTAA
83949571 TTAATA
1 TTAATA
83949577 AAATTTTAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 7 0.35
17 13 0.65
ACGTcount: A:0.49, C:0.00, G:0.10, T:0.41
Consensus pattern (17 bp):
TTAATATTAGAAAGTAA
Found at i:83954583 original size:17 final size:17
Alignment explanation
Indices: 83954561--83954687 Score: 98
Period size: 17 Copynumber: 7.4 Consensus size: 17
83954551 TATGATATGA
*
83954561 TATATATTTATGTAAAT
1 TATATATTTATGTAAGT
*
83954578 TATATATTTATCTAAGT
1 TATATATTTATGTAAGT
*
83954595 TATATAAGTTATGTAAGT
1 TATAT-ATTTATGTAAGT
* * *
83954613 TATGTAAATTATGATATA-A
1 TATAT-ATTTATG-TA-AGT
* *
83954632 AATATATTTAAGT-A-T
1 TATATATTTATGTAAGT
* *
83954647 TATGTAAGTTATGTAAGT
1 TATAT-ATTTATGTAAGT
83954665 TATATATTTATGTAAGT
1 TATATATTTATGTAAGT
83954682 TATATA
1 TATATA
83954688 AGTTATGTAC
Statistics
Matches: 86, Mismatches: 18, Indels: 12
0.74 0.16 0.10
Matches are distributed among these distances:
15 4 0.05
16 6 0.07
17 39 0.45
18 31 0.36
19 5 0.06
20 1 0.01
ACGTcount: A:0.40, C:0.01, G:0.11, T:0.48
Consensus pattern (17 bp):
TATATATTTATGTAAGT
Found at i:83954597 original size:9 final size:9
Alignment explanation
Indices: 83954541--83954720 Score: 69
Period size: 9 Copynumber: 19.4 Consensus size: 9
83954531 TATTTAAGTA
*
83954541 TTATGTAAG
1 TTATATAAG
*
83954550 TTATGATATG
1 TTAT-ATAAG
* *
83954560 ATATAT-AT
1 TTATATAAG
* *
83954568 TTATGTAAA
1 TTATATAAG
*
83954577 TTATAT-AT
1 TTATATAAG
*
83954585 TTATCTAAG
1 TTATATAAG
83954594 TTATATAAG
1 TTATATAAG
*
83954603 TTATGTAAG
1 TTATATAAG
* *
83954612 TTATGTAAAT
1 TTATAT-AAG
*
83954622 TATGATATAAAA
1 T-T-ATAT-AAG
*
83954634 TATATTTAAG
1 T-TATATAAG
*
83954644 TATTATGTAAG
1 --TTATATAAG
*
83954655 TTATGTAAG
1 TTATATAAG
*
83954664 TTATAT-AT
1 TTATATAAG
*
83954672 TTATGTAAG
1 TTATATAAG
83954681 TTATATAAG
1 TTATATAAG
* *
83954690 TTATGTACG
1 TTATATAAG
* *
83954699 TTTTGTAAG
1 TTATATAAG
*
83954708 TTATATAAA
1 TTATATAAG
83954717 TTAT
1 TTAT
83954721 GATATCAAAT
Statistics
Matches: 130, Mismatches: 32, Indels: 18
0.72 0.18 0.10
Matches are distributed among these distances:
8 16 0.12
9 82 0.63
10 11 0.08
11 11 0.08
12 10 0.08
ACGTcount: A:0.38, C:0.01, G:0.13, T:0.48
Consensus pattern (9 bp):
TTATATAAG
Found at i:83954672 original size:87 final size:90
Alignment explanation
Indices: 83954568--83954752 Score: 250
Period size: 96 Copynumber: 2.0 Consensus size: 90
83954558 TGATATATAT
*
83954568 TTATGTAAATTATATATTTATCTAAGTTATATAAG-T-TA-TGTAAGTTATGTAAATTATGATAT
1 TTATGTAAATTATATATTTATCTAAGTTATATAAGTTGTATTGTAAGTTATATAAATTATGATAT
83954630 AAAATATATTTAAGTATTATGTAAG
66 AAAATATATTTAAGTATTATGTAAG
* *
83954655 TTATGTAAGTTATATATTTATGTAAGTTATATAAGTTATGTACGTTTTGTAAGTTATATAAATTA
1 TTATGTAAATTATATATTTATCTAAGTTATATAAG-T-TGTA----TTGTAAGTTATATAAATTA
* *
83954720 TGATATCAAATATATTTATGTATTATGTAAG
60 TGATATAAAATATATTTAAGTATTATGTAAG
83954751 TT
1 TT
83954753 TTTTATTTCA
Statistics
Matches: 84, Mismatches: 5, Indels: 9
0.86 0.05 0.09
Matches are distributed among these distances:
87 33 0.39
90 1 0.01
91 2 0.02
96 48 0.57
ACGTcount: A:0.38, C:0.02, G:0.12, T:0.48
Consensus pattern (90 bp):
TTATGTAAATTATATATTTATCTAAGTTATATAAGTTGTATTGTAAGTTATATAAATTATGATAT
AAAATATATTTAAGTATTATGTAAG
Found at i:83954846 original size:15 final size:15
Alignment explanation
Indices: 83954826--83954881 Score: 71
Period size: 15 Copynumber: 3.8 Consensus size: 15
83954816 AAGTAGTGGT
83954826 ATTAAATAATATTTA
1 ATTAAATAATATTTA
83954841 ATTAAATAATATTT-
1 ATTAAATAATATTTA
*
83954855 A-TAAATATTATTTTA
1 ATTAAATAATA-TTTA
*
83954870 ATTAAGTAATAT
1 ATTAAATAATAT
83954882 ACATGTCGTT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
13 8 0.23
14 4 0.11
15 16 0.46
16 7 0.20
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (15 bp):
ATTAAATAATATTTA
Found at i:83954853 original size:25 final size:27
Alignment explanation
Indices: 83954828--83954882 Score: 67
Period size: 29 Copynumber: 2.0 Consensus size: 27
83954818 GTAGTGGTAT
83954828 TAAATAATA-TTTAATTAAATAATATTTA
1 TAAATAATATTTTAATTAAATAATA--TA
* *
83954856 TAAATATTATTTTAATTAAGTAATATA
1 TAAATAATATTTTAATTAAATAATATA
83954883 CATGTCGTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 2 0.08
28 8 0.33
29 14 0.58
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (27 bp):
TAAATAATATTTTAATTAAATAATATA
Found at i:83955990 original size:274 final size:274
Alignment explanation
Indices: 83955091--83956313 Score: 2234
Period size: 274 Copynumber: 4.5 Consensus size: 274
83955081 ATAAAACGGA
* *
83955091 GAATTTTTTAAGATTCATCATACGCGGCGTTGTTACACCTAGGGAGGATCCAATATATCTTGCAG
1 GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
83955156 CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAATA
66 CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAATA
*
83955221 TTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTGAATATAATAATATAAAAAA-AATCA
131 TTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTGAATATAATAATATAAAAAAGAATCG
* * *
83955285 TAGTTTAAATTTTATAAGTAAATTGGAAATAAATATTCAATAGTAAATGAGCTCGATAGAACATT
196 TAGTTTAATTTTTATAAGTAAATTAGAAATAAATATTCAATAGTAAATGAGCTCGATAGAACTTT
83955350 TTTCAAGTCTTTTT
261 TTTCAAGTCTTTTT
*
83955364 GAATTTTTTAAGATTCATCATACGTGGCATTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
1 GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
*
83955429 CTCGATATAAGGCAACTCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAATA
66 CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAATA
*
83955494 TTAAAATCAAACATTATTAATATAAAAAAATAGCAATTTGAATATAATAATATAAAAAAAGAATC
131 TTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTGAATATAATAATAT-AAAAAAGAATC
*
83955559 GTAGTTTAATTTTTATAAGTACATTAGAAATAAATATTCAATAGTAAATGAGCTCGATAGAACTT
195 GTAGTTTAATTTTTATAAGTAAATTAGAAATAAATATTCAATAGTAAATGAGCTCGATAGAACTT
83955624 TTTTCAAGTCTTTTT
260 TTTTCAAGTCTTTTT
* * *
83955639 TAATTTTTTGAGATTCATCATACGTGGCGGTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
1 GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
*
83955704 CTCGACATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAATA
66 CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAATA
83955769 TTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTGAATATAATAATATAAAAAAGAATCG
131 TTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTGAATATAATAATATAAAAAAGAATCG
*
83955834 TAGTTTAATTTTTATAAGTACATTAGAAATAAATATTCAATAGTAAATGAGCTCGATAGAACTTT
196 TAGTTTAATTTTTATAAGTAAATTAGAAATAAATATTCAATAGTAAATGAGCTCGATAGAACTTT
*
83955899 TTTCAAGTCTTTTC
261 TTTCAAGTCTTTTT
*
83955913 GAATTTTTTAAGATTCATCATACGGGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
1 GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
* * *
83955978 CTCCATATAAGGCAACCCATCAGGTTTCCAGCCTGTATACTTTGAATCTTTAAAATATTTAAATA
66 CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAATA
83956043 TTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTGAATATAATAATATAAAAAAGAATCG
131 TTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTGAATATAATAATATAAAAAAGAATCG
*
83956108 TAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAAATGAGCTCGATAGAACTTT
196 TAGTTTAATTTTTATAAGTAAATTAGAAATAAATATTCAATAGTAAATGAGCTCGATAGAACTTT
83956173 TTTCAAGTCTTTTT
261 TTTCAAGTCTTTTT
83956187 GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTA-GGAGGATCCATTATATCTTGCAG
1 GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
83956251 CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAA
66 CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAA
83956314 ATAAGGTTGG
Statistics
Matches: 915, Mismatches: 33, Indels: 4
0.96 0.03 0.00
Matches are distributed among these distances:
273 261 0.29
274 399 0.44
275 255 0.28
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.35
Consensus pattern (274 bp):
GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAATA
TTAAAATCAAACATTATTAATATAAAAAAATAGTAATTTGAATATAATAATATAAAAAAGAATCG
TAGTTTAATTTTTATAAGTAAATTAGAAATAAATATTCAATAGTAAATGAGCTCGATAGAACTTT
TTTCAAGTCTTTTT
Found at i:83956594 original size:15 final size:15
Alignment explanation
Indices: 83956574--83956602 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
83956564 AGAATTTTGA
83956574 AATAAAACGTACCTT
1 AATAAAACGTACCTT
83956589 AATAAAACGTACCT
1 AATAAAACGTACCT
83956603 GGTCTACTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.21, G:0.07, T:0.24
Consensus pattern (15 bp):
AATAAAACGTACCTT
Found at i:83957116 original size:183 final size:183
Alignment explanation
Indices: 83956803--83957171 Score: 666
Period size: 183 Copynumber: 2.0 Consensus size: 183
83956793 CCTAGAACAG
* *
83956803 ATGTCAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
1 ATGTAAGATTATAAGAGTAACACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
83956868 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGCTGCAGGAGG
66 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGCTGCAGGAGG
*
83956933 AGCAGGAAGCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
131 AGCAGGAAGCAGTAACTGAAACACATACAACATTAATTCACTAATACAGACAC
*
83956986 ATGTAAGATTATAAGAGTAACACCAAATATATTTCAGTTTAAGCAAATATGAAAACTTTATCTAT
1 ATGTAAGATTATAAGAGTAACACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
*
83957051 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
66 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGCTGCAGGAGG
* * *
83957116 AGTAGGAAGCAGTAACTGAAACATATACAACATTAATTCACTAATATAGACAC
131 AGCAGGAAGCAGTAACTGAAACACATACAACATTAATTCACTAATACAGACAC
83957169 ATG
1 ATG
83957172 GAACTATATC
Statistics
Matches: 178, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
183 178 1.00
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.27
Consensus pattern (183 bp):
ATGTAAGATTATAAGAGTAACACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGCTGCAGGAGG
AGCAGGAAGCAGTAACTGAAACACATACAACATTAATTCACTAATACAGACAC
Found at i:83957261 original size:14 final size:13
Alignment explanation
Indices: 83957242--83957271 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
83957232 CAATATAATT
83957242 TTACTTCATATATA
1 TTACTTCATATA-A
83957256 TTACTTCATATAA
1 TTACTTCATATAA
83957269 TTA
1 TTA
83957272 TTATAGTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.37, C:0.13, G:0.00, T:0.50
Consensus pattern (13 bp):
TTACTTCATATAA
Found at i:83962026 original size:40 final size:39
Alignment explanation
Indices: 83961921--83962045 Score: 115
Period size: 40 Copynumber: 3.1 Consensus size: 39
83961911 GGTGCCGTTT
* * *
83961921 TGCTCAACACTTTTGCGGCGTTTTTAGAAAAATGCCGCTAA
1 TGCTTAAC-CTTTTGCGGCG-TTTTACAAAAACGCCGCTAA
* * ** *
83961962 TACTTCACCCATTGCGGCACTTTTACAAAAACGCCGCTAA
1 TGCTTAACCTTTTGCGGC-GTTTTACAAAAACGCCGCTAA
* *
83962002 TGCTTGAACTTTTTGCGGCGTTTTACGAGAAACGCCGCTAA
1 TGCTT-AACCTTTTGCGGCGTTTTAC-AAAAACGCCGCTAA
83962043 TGC
1 TGC
83962046 CTCAATAGCT
Statistics
Matches: 66, Mismatches: 15, Indels: 6
0.76 0.17 0.07
Matches are distributed among these distances:
40 36 0.55
41 30 0.45
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.30
Consensus pattern (39 bp):
TGCTTAACCTTTTGCGGCGTTTTACAAAAACGCCGCTAA
Found at i:83962153 original size:154 final size:150
Alignment explanation
Indices: 83961909--83962317 Score: 399
Period size: 154 Copynumber: 2.6 Consensus size: 150
83961899 TAACTAATGG
* * * *
83961909 ACGGTGCCGTTTTGCTCAACACTTTTGCGGCGTTTTTAGAAAAATGCCGCTAATACTTCACCCAT
1 ACGGCGCCGTTTTGCTC-A-ACTTTTGCGGCGTTTTT-G-AAACTGCCGCTAATGCGTCA-CCAT
* ** * * * *
83961974 TGCGGCACTTTTACAAAAACGCCGCTAATGCTTGAACTTTTTGCGGCGTTTTACG-AGAAACGCC
61 TGCGGC-GTTTT-TTAAAACGCCGCTAATGCTTGAACTTATAGAGGCATTTTACGTA-AAACGCC
* *
83962038 GCTAATGCCTC-AATAGCTCACCTACAT
123 GCTAATGCCTCAAAGAGCTCACCAACAT
* *
83962065 ACGGCGCCGTTTTGCTCAATCTTTTGCGACGTTTGTTGAAACTGCTGCTAATGCGTCACCTATTG
1 ACGGCGCCGTTTTGCTCAA-CTTTTGCGGCGTTT-TTGAAACTGCCGCTAATGCGTCACC-ATTG
* **
83962130 CGGCGTTTTTGGTAAAACGCCGCTAATGCTTGAAGTTATAGAGGCATTTTTGGTAAAACGCCGCT
63 CGGCGTTTTT--TAAAACGCCGCTAATGCTTGAACTTATAGAGGCATTTTACGTAAAACGCCGCT
83962195 AATGCCTCAAAAGAGCTCACCAACAT
126 AATGCCTC-AAAGAGCTCACCAACAT
* * * * *
83962221 ACGGCACCGTTTTGCTCAACACTTTGCGGCGTTTTTTGACAACCGCCGCTAATGTGTCAGCCGTT
1 ACGGCGCCGTTTTGCTCAAC-TTTTGCGGCG-TTTTTGA-AACTGCCGCTAATGCGTCA-CCATT
* *
83962286 GCAGCGTTCTTTTATAAACGCCACTAATGCTT
62 GCGGCGTT-TTTTA-AAACGCCGCTAATGCTT
83962318 TATTTTTTGT
Statistics
Matches: 212, Mismatches: 27, Indels: 27
0.80 0.10 0.10
Matches are distributed among these distances:
153 6 0.03
154 76 0.36
155 17 0.08
156 64 0.30
157 44 0.21
158 5 0.02
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (150 bp):
ACGGCGCCGTTTTGCTCAACTTTTGCGGCGTTTTTGAAACTGCCGCTAATGCGTCACCATTGCGG
CGTTTTTTAAAACGCCGCTAATGCTTGAACTTATAGAGGCATTTTACGTAAAACGCCGCTAATGC
CTCAAAGAGCTCACCAACAT
Found at i:83962335 original size:156 final size:153
Alignment explanation
Indices: 83962031--83962317 Score: 373
Period size: 156 Copynumber: 1.8 Consensus size: 153
83962021 GTTTTACGAG
* * * *
83962031 AAACGCCGCTAATGCCTCAATAGCTCACCTACATACGGCGCCGTTTTGCTCAATCTTTTGCGACG
1 AAACGCCGCTAATGCCTCAAGAGCTCACCAACATACGGCACCGTTTTGCTCAATCCTTTGCGACG
* * * *
83962096 TTTGTTGAAACTGCTGCTAATGCGTCACCTATTGCGGCGTTTTTGGTAAAACGCCGCTAATGCTT
66 TTTGTTGAAACCGCCGCTAATGCGTCACCTATTGCAGCGTTTTT-GTAAAACGCCACTAATGCTT
83962161 GAAGTTATAGAGGCATTTTTGGTA
130 GAAGTTATAGAGGCATTTTTGGTA
83962185 AAACGCCGCTAATGCCTCAAAAGAGCTCACCAACATACGGCACCGTTTTGCTCAA-CACTTTGCG
1 AAACGCCGCTAATGCCTC--AAGAGCTCACCAACATACGGCACCGTTTTGCTCAATC-CTTTGCG
* * * *
83962249 GCGTTTTTTGACAACCGCCGCTAATGTGTCAGCC-GTTGCAGCGTTCTTT-TATAAACGCCACTA
63 ACGTTTGTTGA-AACCGCCGCTAATGCGTCA-CCTATTGCAGCGTT-TTTGTA-AAACGCCACTA
83962312 ATGCTT
124 ATGCTT
83962318 TATTTTTTGT
Statistics
Matches: 114, Mismatches: 12, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
154 18 0.16
155 1 0.01
156 49 0.43
157 41 0.36
158 5 0.04
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.30
Consensus pattern (153 bp):
AAACGCCGCTAATGCCTCAAGAGCTCACCAACATACGGCACCGTTTTGCTCAATCCTTTGCGACG
TTTGTTGAAACCGCCGCTAATGCGTCACCTATTGCAGCGTTTTTGTAAAACGCCACTAATGCTTG
AAGTTATAGAGGCATTTTTGGTA
Found at i:83962483 original size:12 final size:12
Alignment explanation
Indices: 83962466--83962490 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
83962456 TTTGTCCAAA
83962466 CGCCGCTAAAAG
1 CGCCGCTAAAAG
83962478 CGCCGCTAAAAG
1 CGCCGCTAAAAG
83962490 C
1 C
83962491 CTATTTTGCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.36, G:0.24, T:0.08
Consensus pattern (12 bp):
CGCCGCTAAAAG
Found at i:83970256 original size:19 final size:19
Alignment explanation
Indices: 83970219--83970256 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
83970209 ACCTGTCAGA
*
83970219 AGAAAATAAATGAAGAATT
1 AGAAAATAAATGAAAAATT
83970238 AGAAAATAAAAT-AAAAATT
1 AGAAAAT-AAATGAAAAATT
83970257 TAAATTGCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.68, C:0.00, G:0.11, T:0.21
Consensus pattern (19 bp):
AGAAAATAAATGAAAAATT
Found at i:83982248 original size:56 final size:56
Alignment explanation
Indices: 83982149--83982262 Score: 156
Period size: 56 Copynumber: 2.0 Consensus size: 56
83982139 AAGACCATGG
* *
83982149 TTTTCATATATCTGTGCGAGTAAGACCACGTTTAATACATTGGCATTGATATGTGA
1 TTTTCATATATCTGTGCGAGTAAGACCACGTTTAAGACATTGGCATCGATATGTGA
* * * ** *
83982205 TTTTTATATATGTGTGTGAGTAAGACCACGTTTGGGACGTTGGCATCGATATGTGA
1 TTTTCATATATCTGTGCGAGTAAGACCACGTTTAAGACATTGGCATCGATATGTGA
83982261 TT
1 TT
83982263 ACATGTAAGA
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
56 50 1.00
ACGTcount: A:0.25, C:0.12, G:0.24, T:0.39
Consensus pattern (56 bp):
TTTTCATATATCTGTGCGAGTAAGACCACGTTTAAGACATTGGCATCGATATGTGA
Found at i:83997517 original size:42 final size:43
Alignment explanation
Indices: 83997409--83997548 Score: 151
Period size: 44 Copynumber: 3.3 Consensus size: 43
83997399 TATGTGCTTT
* *
83997409 CGTGTAAGACCTTGTCTGGGACATTGGAATCGACT-TATGATTTA
1 CGTGTAAGACCTTGTCTGGGACATTGGCATC-A-TATTTGATTTA
* *
83997453 CATGTAAGACCATGTCTGGGACATTGGCATCATATTTGATTT-
1 CGTGTAAGACCTTGTCTGGGACATTGGCATCATATTTGATTTA
* * * * *
83997495 TGTGTAAAACCTTGTCTAGGACAATGGCATTGATATTTGA-TTA
1 CGTGTAAGACCTTGTCTGGGACATTGGCA-TCATATTTGATTTA
83997538 CGTGTAAGACC
1 CGTGTAAGACC
83997549 ACATTTGGGA
Statistics
Matches: 80, Mismatches: 13, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
42 26 0.32
43 26 0.32
44 28 0.35
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.34
Consensus pattern (43 bp):
CGTGTAAGACCTTGTCTGGGACATTGGCATCATATTTGATTTA
Found at i:83997544 original size:43 final size:43
Alignment explanation
Indices: 83997409--83997548 Score: 149
Period size: 42 Copynumber: 3.3 Consensus size: 43
83997399 TATGTGCTTT
* * *
83997409 CGTGTAAGACCTTGTCTGGGACATTGGAATCGACT-TATGATTTA
1 CGTGTAAGACCTTGTCTGGGACATTGGCATTGA-TATTTGA-TTA
* * * *
83997453 CATGTAAGACCATGTCTGGGACATTGGCA-TCATATTTGATTT
1 CGTGTAAGACCTTGTCTGGGACATTGGCATTGATATTTGATTA
* * * *
83997495 TGTGTAAAACCTTGTCTAGGACAATGGCATTGATATTTGATTA
1 CGTGTAAGACCTTGTCTGGGACATTGGCATTGATATTTGATTA
83997538 CGTGTAAGACC
1 CGTGTAAGACC
83997549 ACATTTGGGA
Statistics
Matches: 77, Mismatches: 17, Indels: 5
0.78 0.17 0.05
Matches are distributed among these distances:
42 26 0.34
43 25 0.32
44 26 0.34
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.34
Consensus pattern (43 bp):
CGTGTAAGACCTTGTCTGGGACATTGGCATTGATATTTGATTA
Found at i:83999482 original size:8 final size:8
Alignment explanation
Indices: 83999469--83999493 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
83999459 ATTAGGGACT
83999469 AAAATGTG
1 AAAATGTG
83999477 AAAATGTG
1 AAAATGTG
83999485 AAAATGTG
1 AAAATGTG
83999493 A
1 A
83999494 GGGTTAATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.24, T:0.24
Consensus pattern (8 bp):
AAAATGTG
Found at i:84001564 original size:42 final size:41
Alignment explanation
Indices: 84001459--84001606 Score: 128
Period size: 41 Copynumber: 3.6 Consensus size: 41
84001449 TCCGACTCTT
* *
84001459 AGCACCGGCTCAAAAGCCCTTC-AAGACCAAG-CTCGGATTA-G
1 AGCACTGGCTCAAAAGCCCTTCGAA-ACTAAGTC-CGG-TTATG
* *
84001500 A-CTACTGGCTC-GAAGACCCTTCGGAACTAAGTCCGGTTATG
1 AGC-ACTGGCTCAAAAG-CCCTTCGAAACTAAGTCCGGTTATG
* * *
84001541 A-CTCTGGCTCTAAAAAGCCCTTCGAAACTAAGTTCGGTTATT
1 AGCACTGGCTC--AAAAGCCCTTCGAAACTAAGTCCGGTTATG
84001583 AGCACTGGCTCAAAAGCCCTTCGA
1 AGCACTGGCTCAAAAGCCCTTCGA
84001607 GACCAAGCTC
Statistics
Matches: 88, Mismatches: 10, Indels: 18
0.76 0.09 0.16
Matches are distributed among these distances:
40 14 0.16
41 38 0.43
42 25 0.28
43 11 0.12
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (41 bp):
AGCACTGGCTCAAAAGCCCTTCGAAACTAAGTCCGGTTATG
Found at i:84007493 original size:53 final size:53
Alignment explanation
Indices: 84007337--84007502 Score: 221
Period size: 53 Copynumber: 3.1 Consensus size: 53
84007327 GACGAAAAAT
* **
84007337 ATGTGATAAGTGTG-C-CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCA
1 ATGTGATAA-TGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
84007389 ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
1 ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
* * *
84007442 ATGTGATAATGTGATTCCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGA
1 ATGTGATAATGTGACTCCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A
84007496 TATGTGA
1 -ATGTGA
84007503 ACCGTGTAAG
Statistics
Matches: 103, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
51 4 0.04
52 11 0.11
53 81 0.79
54 1 0.01
55 6 0.06
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (53 bp):
ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
Found at i:84015002 original size:53 final size:53
Alignment explanation
Indices: 84014846--84015011 Score: 221
Period size: 53 Copynumber: 3.1 Consensus size: 53
84014836 GACGAAAAAT
* **
84014846 ATGTGATAAGTGTG-C-CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCA
1 ATGTGATAA-TGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
84014898 ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
1 ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
* * *
84014951 ATGTGATAATGTGATTCCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGA
1 ATGTGATAATGTGACTCCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A
84015005 TATGTGA
1 -ATGTGA
84015012 ACCGTGTAAG
Statistics
Matches: 103, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
51 4 0.04
52 11 0.11
53 81 0.79
54 1 0.01
55 6 0.06
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (53 bp):
ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
Found at i:84017271 original size:43 final size:43
Alignment explanation
Indices: 84017117--84017263 Score: 167
Period size: 43 Copynumber: 3.4 Consensus size: 43
84017107 CATCAAGATG
* **
84017117 TGATTACATGTAAGACCATGTCTGGGACATTGGTATTTAT-TGA
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGATAT-A
* *
84017160 -GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTA-A
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGATATA
* **
84017201 TCGATTTCATGTAAGACCCGGTCTGGGACAGTT-GCATCGATATA
1 T-GATTACATGTAAGACCATGTCTGGGACA-TTGGCATCGATATA
84017245 TGATTACATGTAAGACCAT
1 TGATTACATGTAAGACCAT
84017264 ATTTGGGATA
Statistics
Matches: 86, Mismatches: 13, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
41 1 0.01
42 34 0.40
43 47 0.55
44 4 0.05
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32
Consensus pattern (43 bp):
TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGATATA
Found at i:84021160 original size:33 final size:33
Alignment explanation
Indices: 84021106--84021190 Score: 143
Period size: 33 Copynumber: 2.6 Consensus size: 33
84021096 ATGATTGATA
* *
84021106 ATGAGATGACATCTTGCATTCACGTATGTTACC
1 ATGATATGACATCCTGCATTCACGTATGTTACC
*
84021139 ATGATATGACATCCTGTATTCACGTATGTTACC
1 ATGATATGACATCCTGCATTCACGTATGTTACC
84021172 ATGATATGACATCCTGCAT
1 ATGATATGACATCCTGCAT
84021191 GGGCTTAGGA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 48 1.00
ACGTcount: A:0.28, C:0.21, G:0.16, T:0.34
Consensus pattern (33 bp):
ATGATATGACATCCTGCATTCACGTATGTTACC
Found at i:84023998 original size:46 final size:46
Alignment explanation
Indices: 84023944--84024119 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
84023934 TGGTTGAGCA
84023944 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *** * *
84023990 TCCAAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAATG
* *
84024037 TCCGAGCTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
84024083 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
84024120 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 67 0.63
47 30 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:84024100 original size:93 final size:93
Alignment explanation
Indices: 84023941--84024111 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
84023931 GGATGGTTGA
*
84023941 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCAAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCAAACTCGTTGAGT
84024006 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * * *
84024034 GCATCCGAGCTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCAAACTCGTTGAGT
84024099 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
84024112 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCAAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:84029393 original size:33 final size:32
Alignment explanation
Indices: 84029347--84029408 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 32
84029337 TATCTGCATT
*
84029347 TGATATTGATTCTGTTAATGGGCTAAGGCCAGC
1 TGATACTGATTCTG-TAATGGGCTAAGGCCAGC
* * *
84029380 TGATACTGTTTCTGTGATGGGCTCAGGCC
1 TGATACTGATTCTGTAATGGGCTAAGGCC
84029409 TAGTCTATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
32 13 0.52
33 12 0.48
ACGTcount: A:0.19, C:0.18, G:0.29, T:0.34
Consensus pattern (32 bp):
TGATACTGATTCTGTAATGGGCTAAGGCCAGC
Found at i:84041274 original size:27 final size:27
Alignment explanation
Indices: 84041244--84041430 Score: 189
Period size: 27 Copynumber: 7.0 Consensus size: 27
84041234 CCCTAGGGGG
* *
84041244 AAAATGGTAATTTTATAAATCGAGGTT
1 AAAATGGTAATTCTATAAATCGAGGGT
*
84041271 AAAATGATAATTCTATAAATCGAGGGT
1 AAAATGGTAATTCTATAAATCGAGGGT
** * * ** *
84041298 AAAACAGAAATTCTGTAAATTAAAGGT
1 AAAATGGTAATTCTATAAATCGAGGGT
** * *
84041325 AAAATAATAATTTTGTAAATCGAGGGT
1 AAAATGGTAATTCTATAAATCGAGGGT
*
84041352 AAAATAGTAATTCTATAAATCGAGGGT
1 AAAATGGTAATTCTATAAATCGAGGGT
* * *
84041379 AAAACGGTAATTTTGTAAATCGAGGGT
1 AAAATGGTAATTCTATAAATCGAGGGT
84041406 -AAATCGGTAATTCTATAAATC-AGGG
1 AAAAT-GGTAATTCTATAAATCGAGGG
84041431 GTACTTTGGT
Statistics
Matches: 131, Mismatches: 28, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
26 7 0.05
27 124 0.95
ACGTcount: A:0.43, C:0.07, G:0.19, T:0.30
Consensus pattern (27 bp):
AAAATGGTAATTCTATAAATCGAGGGT
Found at i:84041433 original size:81 final size:81
Alignment explanation
Indices: 84041244--84041430 Score: 236
Period size: 81 Copynumber: 2.3 Consensus size: 81
84041234 CCCTAGGGGG
*
84041244 AAAATGGTAATTTTATAAATCGAGGTTAAAATGATAATTCTATAAATCGAGGGTAAAACAGAAAT
1 AAAATGGTAATTTTATAAATCGAGGGTAAAATGATAATTCTATAAATCGAGGGTAAAACAGAAAT
*
84041309 TCTGTAAATTAAAGGT
66 TCTGTAAATCAAAGGT
** * * *
84041325 AAAATAATAATTTTGTAAATCGAGGGTAAAAT-AGTAATTCTATAAATCGAGGGTAAAACGGTAA
1 AAAATGGTAATTTTATAAATCGAGGGTAAAATGA-TAATTCTATAAATCGAGGGTAAAACAGAAA
* * *
84041389 TTTTGTAAATCGAGGGT
65 TTCTGTAAATCAAAGGT
*
84041406 -AAATCGGTAATTCTATAAATC-AGGG
1 AAAAT-GGTAATTTTATAAATCGAGGG
84041431 GTACTTTGGT
Statistics
Matches: 90, Mismatches: 14, Indels: 5
0.83 0.13 0.05
Matches are distributed among these distances:
80 9 0.10
81 81 0.90
ACGTcount: A:0.43, C:0.07, G:0.19, T:0.30
Consensus pattern (81 bp):
AAAATGGTAATTTTATAAATCGAGGGTAAAATGATAATTCTATAAATCGAGGGTAAAACAGAAAT
TCTGTAAATCAAAGGT
Found at i:84041456 original size:54 final size:53
Alignment explanation
Indices: 84041245--84041460 Score: 155
Period size: 54 Copynumber: 4.0 Consensus size: 53
84041235 CCTAGGGGGA
* * * * * * *
84041245 AAATGGTAATTTTATAAATCGAGGTTAAAATGATAATTCTATAAATCGAGGGT
1 AAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGT
* * * ** * *** **
84041298 AAAACAGAAATTCTGTAAATTAAAGGTAAAATAATAATTTTGTAAATCGAGGGT
1 -AAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGT
**
84041352 AAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGT
1 -AAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGT
* **** *
84041406 AAATCGGTAATTCTATAAATC-AGGGGTACTTTGGTAATTTTACAAGTCGAGGGT
1 AAAT-AGTAATTCTATAAATCGA-GGGTAAAACGGTAATTTTACAAATCGAGGGT
84041460 A
1 A
84041461 TTTCAATAAT
Statistics
Matches: 131, Mismatches: 29, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
53 5 0.04
54 126 0.96
ACGTcount: A:0.41, C:0.07, G:0.20, T:0.31
Consensus pattern (53 bp):
AAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGT
Found at i:84041471 original size:81 final size:80
Alignment explanation
Indices: 84041386--84041614 Score: 219
Period size: 81 Copynumber: 2.8 Consensus size: 80
84041376 GGTAAAACGG
* * * *
84041386 TAATTTTGTAAATCGAGGGTAAATCGGTAATTCTATAAATCAGGGGTACTTTGGTAATTTTACAA
1 TAATTTTGTAAATCAAGGGTAATTCGGTAATT-TACAAATCAGGGGTATTTTGGTAATTTTACAA
*
84041451 GTCGA-GGGTATTTCAA
65 -ACGAGGGGTATTTCAA
** ** * * *
84041467 TAATTTTACAGGTCAAGGGTATTTCAGTAATTTCACAAATCAAGGGTATTTTGGTAATTTTACAA
1 TAATTTTGTAAATCAAGGGTAATTCGGTAATTT-ACAAATCAGGGGTATTTTGGTAATTTTACAA
* ***
84041532 ACTAGGGGTATTTTGG
65 ACGAGGGGTATTTCAA
* * * *
84041548 TAATTTTGTAAACCAAGGGT-ATTCTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATA
1 TAATTTTGTAAATCAAGGGTAATTC-GGTAA-TTTACAAATCAGGGGTATTTTGGTAATTTTACA
84041612 AAC
64 AAC
84041615 CAAGAGTATT
Statistics
Matches: 117, Mismatches: 27, Indels: 8
0.77 0.18 0.05
Matches are distributed among these distances:
80 6 0.05
81 108 0.92
82 3 0.03
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (80 bp):
TAATTTTGTAAATCAAGGGTAATTCGGTAATTTACAAATCAGGGGTATTTTGGTAATTTTACAAA
CGAGGGGTATTTCAA
Found at i:84041668 original size:27 final size:27
Alignment explanation
Indices: 84041411--84041661 Score: 234
Period size: 27 Copynumber: 9.3 Consensus size: 27
84041401 AGGGTAAATC
* * * *
84041411 GGTAATTCTATAAATCAGGGGTACTTT
1 GGTAATTTTACAAACCAGGGGTATTTT
** *
84041438 GGTAATTTTACAAGTC-GAGGGTATTTC
1 GGTAATTTTACAAACCAG-GGGTATTTT
** *** * *
84041465 AATAATTTTACAGGTCAAGGGTATTTC
1 GGTAATTTTACAAACCAGGGGTATTTT
* * * *
84041492 AGTAATTTCACAAATCAAGGGTATTTT
1 GGTAATTTTACAAACCAGGGGTATTTT
*
84041519 GGTAATTTTACAAACTAGGGGTATTTT
1 GGTAATTTTACAAACCAGGGGTATTTT
** * *
84041546 GGTAATTTTGTAAACCAAGGGTATTCT
1 GGTAATTTTACAAACCAGGGGTATTTT
84041573 GGTAATTTTACAAACCAGGGGTATTTT
1 GGTAATTTTACAAACCAGGGGTATTTT
* * * *
84041600 GGTGATTTTATAAACCAAGAGTATTTT
1 GGTAATTTTACAAACCAGGGGTATTTT
*
84041627 AGTAATTTTACAAACCAGGGGTATTTT
1 GGTAATTTTACAAACCAGGGGTATTTT
84041654 GGTAATTT
1 GGTAATTT
84041662 GGTAAACTAA
Statistics
Matches: 184, Mismatches: 38, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
26 1 0.01
27 183 0.99
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (27 bp):
GGTAATTTTACAAACCAGGGGTATTTT
Found at i:84043630 original size:6 final size:6
Alignment explanation
Indices: 84043612--84043699 Score: 92
Period size: 6 Copynumber: 14.3 Consensus size: 6
84043602 AAGAAACATT
84043612 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAGGA GA-CAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCA-GA -ATCAGA ATCAGA
* *
84043661 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
84043700 GTGAATACAA
Statistics
Matches: 70, Mismatches: 4, Indels: 16
0.78 0.04 0.18
Matches are distributed among these distances:
5 4 0.06
6 56 0.80
7 8 0.11
8 2 0.03
ACGTcount: A:0.49, C:0.16, G:0.18, T:0.17
Consensus pattern (6 bp):
ATCAGA
Found at i:84043659 original size:31 final size:31
Alignment explanation
Indices: 84043621--84043699 Score: 124
Period size: 31 Copynumber: 2.5 Consensus size: 31
84043611 TATCAGAACT
84043621 AGAATCAGAATCAGAATCAGAATCAGG-AGAC
1 AGAATCAGAATCAGAATCAGAATCAGGTA-AC
*
84043652 AGAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
84043683 AGAATCAAAATCAGAAT
1 AGAATCAGAATCAGAAT
84043700 GTGAATACAA
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
31 44 0.98
32 1 0.02
ACGTcount: A:0.49, C:0.15, G:0.19, T:0.16
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:84044325 original size:81 final size:81
Alignment explanation
Indices: 84044213--84044452 Score: 345
Period size: 81 Copynumber: 3.0 Consensus size: 81
84044203 AACACCCTAG
* * * *
84044213 GGGTAAAATAATAATTTTATAAATTGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAATAG
1 GGGTAAAACAATAATTTTATAAATTGAGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAATGG
84044278 TAATTCTATAAATCGA
66 TAATTCTATAAATCGA
** * * * *
84044294 GGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATAGTAATTTTGTAAATCAAGGGTAAAATGG
1 GGGTAAAACAATAATTTTATAAATTGAGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAATGG
*
84044359 TAATTCTGTAAATCGA
66 TAATTCTATAAATCGA
* * * *
84044375 GGGTAAAATAATAATTCTATAAATTGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAATTGG
1 GGGTAAAACAATAATTTTATAAATTGAGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAATGG
84044440 TAATTCTATAAAT
66 TAATTCTATAAAT
84044453 TAGGGGTACT
Statistics
Matches: 137, Mismatches: 22, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
81 137 1.00
ACGTcount: A:0.42, C:0.06, G:0.20, T:0.32
Consensus pattern (81 bp):
GGGTAAAACAATAATTTTATAAATTGAGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAATGG
TAATTCTATAAATCGA
Found at i:84044460 original size:27 final size:27
Alignment explanation
Indices: 84044213--84044452 Score: 291
Period size: 27 Copynumber: 8.9 Consensus size: 27
84044203 AACACCCTAG
* * *
84044213 GGGTAAAATAATAATTTTATAAATTGA
1 GGGTAAAATAGTAATTCTATAAATCGA
*
84044240 GGGTAAAACAGTAATTCTATAAATCGA
1 GGGTAAAATAGTAATTCTATAAATCGA
84044267 GGGTAAAATAGTAATTCTATAAATCGA
1 GGGTAAAATAGTAATTCTATAAATCGA
** * *
84044294 GGGTAAAACGGTAATTTTGTAAATCGA
1 GGGTAAAATAGTAATTCTATAAATCGA
* * *
84044321 GGGTAAAATAGTAATTTTGTAAATCAA
1 GGGTAAAATAGTAATTCTATAAATCGA
* *
84044348 GGGTAAAATGGTAATTCTGTAAATCGA
1 GGGTAAAATAGTAATTCTATAAATCGA
* *
84044375 GGGTAAAATAATAATTCTATAAATTGA
1 GGGTAAAATAGTAATTCTATAAATCGA
** * *
84044402 GGGTAAAACGGTAATTTTGTAAATCGA
1 GGGTAAAATAGTAATTCTATAAATCGA
* *
84044429 GGGTAAATTGGTAATTCTATAAAT
1 GGGTAAAATAGTAATTCTATAAAT
84044453 TAGGGGTACT
Statistics
Matches: 184, Mismatches: 29, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 184 1.00
ACGTcount: A:0.42, C:0.06, G:0.20, T:0.32
Consensus pattern (27 bp):
GGGTAAAATAGTAATTCTATAAATCGA
Found at i:84044460 original size:54 final size:54
Alignment explanation
Indices: 84044213--84044457 Score: 348
Period size: 54 Copynumber: 4.6 Consensus size: 54
84044203 AACACCCTAG
* * * *
84044213 GGGTAAAATAATAATTTTATAAATTGAGGGTAAAACAGTAATTCTATAAATCGA
1 GGGTAAAATAGTAATTCTATAAATTGAGGGTAAAACGGTAATTCTGTAAATCGA
* *
84044267 GGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGA
1 GGGTAAAATAGTAATTCTATAAATTGAGGGTAAAACGGTAATTCTGTAAATCGA
* * ** *
84044321 GGGTAAAATAGTAATTTTGTAAATCAAGGGTAAAATGGTAATTCTGTAAATCGA
1 GGGTAAAATAGTAATTCTATAAATTGAGGGTAAAACGGTAATTCTGTAAATCGA
* *
84044375 GGGTAAAATAATAATTCTATAAATTGAGGGTAAAACGGTAATTTTGTAAATCGA
1 GGGTAAAATAGTAATTCTATAAATTGAGGGTAAAACGGTAATTCTGTAAATCGA
* *
84044429 GGGTAAATTGGTAATTCTATAAATT-AGGG
1 GGGTAAAATAGTAATTCTATAAATTGAGGG
84044458 GTACTTTGGT
Statistics
Matches: 170, Mismatches: 21, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
53 4 0.02
54 166 0.98
ACGTcount: A:0.42, C:0.06, G:0.21, T:0.31
Consensus pattern (54 bp):
GGGTAAAATAGTAATTCTATAAATTGAGGGTAAAACGGTAATTCTGTAAATCGA
Found at i:84044497 original size:27 final size:27
Alignment explanation
Indices: 84044467--84044531 Score: 94
Period size: 27 Copynumber: 2.4 Consensus size: 27
84044457 GGTACTTTGG
84044467 TAATTTTACAAGTCGAGCGTATTTCAA
1 TAATTTTACAAGTCGAGCGTATTTCAA
* * *
84044494 TAATTTTACAGGTCGAGGGTATTTCAG
1 TAATTTTACAAGTCGAGCGTATTTCAA
*
84044521 TAATTTCACAA
1 TAATTTTACAA
84044532 ATCAGGGGTA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37
Consensus pattern (27 bp):
TAATTTTACAAGTCGAGCGTATTTCAA
Found at i:84044676 original size:81 final size:81
Alignment explanation
Indices: 84044454--84044688 Score: 238
Period size: 81 Copynumber: 2.9 Consensus size: 81
84044444 TCTATAAATT
* * * * * *** *
84044454 AGGGGTACTTTGGTAATTTTACAAGTCG-AGCGTATTTCAATAATTTTACAGGTCGAGGGTATTT
1 AGGGGTATTTTGGTAATTTTACAA-ACGAAGAGTATTTTAGTAATTTTACAAACCAAGGGTATTT
** *
84044518 CAGTAATTTCACAAATC
65 TGGTAATTTCACAAACC
* * * * ** *
84044535 AGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTTGTAATTTTGTAAACTAAGGGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAACGAAGAGTATTTTAGTAATTTTACAAACCAAGGGTATTTT
*
84044600 GGTAATTTTACAAACC
66 GGTAATTTCACAAACC
* * * *
84044616 ATGGGTATTTTGGTGATTTTATAAACGAAGAGTATTTTAGTAATTTTACAAACCAGGGGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAACGAAGAGTATTTTAGTAATTTTACAAACCAAGGGTATTTT
84044681 GGTAATTT
66 GGTAATTT
84044689 GGTAAACTAA
Statistics
Matches: 123, Mismatches: 30, Indels: 2
0.79 0.19 0.01
Matches are distributed among these distances:
80 1 0.01
81 122 0.99
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTTTACAAACGAAGAGTATTTTAGTAATTTTACAAACCAAGGGTATTTT
GGTAATTTCACAAACC
Found at i:84044695 original size:27 final size:27
Alignment explanation
Indices: 84044510--84044688 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
84044500 TACAGGTCGA
** * *
84044510 GGGTATTTCAGTAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
84044537 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* ** * *
84044564 GGGTATTTTTGTAATTTTGTAAACTAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
84044591 GGGTATTTTGGTAATTTTACAAACCAT
1 GGGTATTTTGGTAATTTTACAAACCAG
* * * *
84044618 GGGTATTTTGGTGATTTTATAAACGAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
84044645 GAGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
84044672 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
84044689 GGTAAACTAA
Statistics
Matches: 126, Mismatches: 26, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 126 1.00
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:84044695 original size:54 final size:54
Alignment explanation
Indices: 84044539--84044704 Score: 244
Period size: 54 Copynumber: 3.1 Consensus size: 54
84044529 CAAATCAGGG
* * *
84044539 GTATTTTGGTAATTTTACAAACTAGGGGTATTTTTGTAATTTTGTAAACTAAGG
1 GTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACTAAGA
* * * *
84044593 GTATTTTGGTAATTTTACAAACCATGGGTATTTTGGTGATTTTATAAACGAAGA
1 GTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACTAAGA
* *
84044647 GTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTGGTAAACTAA-A
1 GTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACTAAGA
84044700 GTATT
1 GTATT
84044705 CTAAACAGGG
Statistics
Matches: 99, Mismatches: 13, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
53 6 0.06
54 93 0.94
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.42
Consensus pattern (54 bp):
GTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACTAAGA
Found at i:84046973 original size:47 final size:47
Alignment explanation
Indices: 84046915--84047264 Score: 583
Period size: 47 Copynumber: 7.4 Consensus size: 47
84046905 CAGCCAAGAC
* *
84046915 AGTGTATATATGTGATAGGGCCTAATGGTCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
84046962 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
84047009 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
84047056 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
84047105 AGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
84047152 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * *
84047199 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
84047246 AGTGTATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
84047265 TCCCGAAGGG
Statistics
Matches: 287, Mismatches: 14, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
47 240 0.84
49 47 0.16
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:84047171 original size:143 final size:141
Alignment explanation
Indices: 84046915--84047264 Score: 592
Period size: 143 Copynumber: 2.5 Consensus size: 141
84046905 CAGCCAAGAC
*
84046915 AGTGTATATATGTGATAGGGCCTAATGGTCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 AGTGTATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
84046980 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
66 GGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
84047045 ATGAATGTGAA
131 ATGAATGTGAA
*
84047056 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
1 AGTG--TATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
84047121 AAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
64 AAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
84047186 TGATGAATGTGAA
129 TGATGAATGTGAA
* * * * * * *
84047199 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAA
1 AGTGTATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
84047264 G
66 G
84047265 TCCCGAAGGG
Statistics
Matches: 196, Mismatches: 11, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
141 58 0.30
143 138 0.70
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (141 bp):
AGTGTATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
GGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
ATGAATGTGAA
Found at i:84047433 original size:37 final size:37
Alignment explanation
Indices: 84047383--84047498 Score: 171
Period size: 37 Copynumber: 3.1 Consensus size: 37
84047373 CCGAGCTCTA
84047383 AAGACCCGATGACTATGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATGACTATGTGTGGGGATTTTGTCCGGGT
* *
84047420 AAGACCCGATGACTACGTGTGGGAATTTTGTCCGGGT
1 AAGACCCGATGACTATGTGTGGGGATTTTGTCCGGGT
* * *
84047457 AAGACCCGATAACT-TCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTAT-GTGTGGGGATTTTGTCCGGGT
84047494 AAGAC
1 AAGAC
84047499 TTCGTAATAA
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
37 71 1.00
ACGTcount: A:0.23, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
AAGACCCGATGACTATGTGTGGGGATTTTGTCCGGGT
Found at i:84050828 original size:31 final size:31
Alignment explanation
Indices: 84050793--84050868 Score: 93
Period size: 31 Copynumber: 2.5 Consensus size: 31
84050783 AAGAAACATT
*
84050793 ATCAGAA-CTAGAATTAGAATCAGG-AGACAGA
1 ATCAGAATC-AGAATCAGAATCAGGTA-ACAGA
*
84050824 ATCAGAATCAGAATCAGTATCAGGTAACAGA
1 ATCAGAATCAGAATCAGAATCAGGTAACAGA
*
84050855 ATCAAAATCAGAAT
1 ATCAGAATCAGAAT
84050869 GTGAATGCAA
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
31 38 0.95
32 2 0.05
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.18
Consensus pattern (31 bp):
ATCAGAATCAGAATCAGAATCAGGTAACAGA
Found at i:84050829 original size:6 final size:6
Alignment explanation
Indices: 84050793--84050868 Score: 59
Period size: 6 Copynumber: 12.3 Consensus size: 6
84050783 AAGAAACATT
* *
84050793 ATCAGA A-CTAGA ATTAGA ATCAGGA GA-CAGA ATCAGA ATCAGA ATCAGT
1 ATCAGA ATC-AGA ATCAGA ATCA-GA -ATCAGA ATCAGA ATCAGA ATCAGA
*
84050842 ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCA-G-A ATCAGA ATCAGA ATCAGA AT
84050869 GTGAATGCAA
Statistics
Matches: 56, Mismatches: 6, Indels: 16
0.72 0.08 0.21
Matches are distributed among these distances:
5 4 0.07
6 43 0.77
7 7 0.12
8 2 0.04
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:84051035 original size:27 final size:26
Alignment explanation
Indices: 84050987--84051046 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
84050977 ACGAGGTTGC
*
84050987 CAGATATTGTGACAAAGTCACCAGATA
1 CAGATATTGTGACAAAGCCACCAGA-A
* * *
84051014 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACAAAGCCACCAGAA
84051040 CAGATAT
1 CAGATAT
84051047 ATTTATATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACAAAGCCACCAGAA
Found at i:84052015 original size:27 final size:27
Alignment explanation
Indices: 84051768--84052007 Score: 282
Period size: 27 Copynumber: 8.9 Consensus size: 27
84051758 AACACCCTAG
*
84051768 GGGTAAAATGGTAATTTTATAAATCGA
1 GGGTAAAACGGTAATTTTATAAATCGA
* * *
84051795 GGGTAAAATGGTAATTCTGTAAATCGA
1 GGGTAAAACGGTAATTTTATAAATCGA
** *
84051822 GGGTAAAATAGTAATTCTATAAATCGA
1 GGGTAAAACGGTAATTTTATAAATCGA
* * *
84051849 GGGAAAAACAGTAATTTTGTAAATCGA
1 GGGTAAAACGGTAATTTTATAAATCGA
* * *
84051876 GGATAAAACAGTAATTTTGTAAATCGA
1 GGGTAAAACGGTAATTTTATAAATCGA
* * *
84051903 GGGTAAAATGGTAATTCTATAAATCGC
1 GGGTAAAACGGTAATTTTATAAATCGA
**
84051930 GGGTAAAACAATAATTTTATAAATCGA
1 GGGTAAAACGGTAATTTTATAAATCGA
* *
84051957 GGGTAAAACGGTAATTTTGTAAATAGA
1 GGGTAAAACGGTAATTTTATAAATCGA
* *
84051984 AGGTAAAACGGTAATTCTATAAAT
1 GGGTAAAACGGTAATTTTATAAAT
84052008 TAGGGGTACT
Statistics
Matches: 185, Mismatches: 28, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 185 1.00
ACGTcount: A:0.42, C:0.07, G:0.21, T:0.30
Consensus pattern (27 bp):
GGGTAAAACGGTAATTTTATAAATCGA
Found at i:84052023 original size:27 final size:27
Alignment explanation
Indices: 84051993--84052242 Score: 245
Period size: 27 Copynumber: 9.3 Consensus size: 27
84051983 AAGGTAAAAC
* * * *
84051993 GGTAATTCTATAAATTAGGGGTACTTT
1 GGTAATTTTACAAACTAGGGGTATTTT
* *
84052020 GGTAATTTTAC-AAGTTGAGGGTATTTT
1 GGTAATTTTACAAACTAG-GGGTATTTT
** ** *
84052047 AATAATTTTAC-AGGTCGAGGGTATTTT
1 GGTAATTTTACAAACTAG-GGGTATTTT
* * * *
84052074 AGTAATTTCACAAATTAAGGGTATTTT
1 GGTAATTTTACAAACTAGGGGTATTTT
84052101 GGTAATTTTACAAACTAGGGGTATTTT
1 GGTAATTTTACAAACTAGGGGTATTTT
** * *
84052128 GGTAATTTTGTAAACCAAGGGTATTTT
1 GGTAATTTTACAAACTAGGGGTATTTT
84052155 GGTAATTTTACAAACTAGGGGTATTTT
1 GGTAATTTTACAAACTAGGGGTATTTT
* * * *
84052182 GGTGATTTTATAAACCAAGGGTATTTT
1 GGTAATTTTACAAACTAGGGGTATTTT
*
84052209 AGTAATTTTACAAACTA-GGGTATTTT
1 GGTAATTTTACAAACTAGGGGTATTTT
84052235 GGTAATTT
1 GGTAATTT
84052243 GGTAAACTGA
Statistics
Matches: 185, Mismatches: 36, Indels: 5
0.82 0.16 0.02
Matches are distributed among these distances:
26 20 0.11
27 163 0.88
28 2 0.01
ACGTcount: A:0.30, C:0.07, G:0.21, T:0.42
Consensus pattern (27 bp):
GGTAATTTTACAAACTAGGGGTATTTT
Found at i:84052042 original size:81 final size:81
Alignment explanation
Indices: 84051768--84052007 Score: 354
Period size: 81 Copynumber: 3.0 Consensus size: 81
84051758 AACACCCTAG
** * * *
84051768 GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAATAG
1 GGGTAAAACAGTAATTTTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATGG
84051833 TAATTCTATAAATCGA
66 TAATTCTATAAATCGA
* * * *
84051849 GGGAAAAACAGTAATTTTGTAAATCGAGGATAAAACAGTAATTTTGTAAATCGAGGGTAAAATGG
1 GGGTAAAACAGTAATTTTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATGG
*
84051914 TAATTCTATAAATCGC
66 TAATTCTATAAATCGA
* * * *
84051930 GGGTAAAACAATAATTTTATAAATCGAGGGTAAAACGGTAATTTTGTAAATAGAAGGTAAAACGG
1 GGGTAAAACAGTAATTTTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATGG
84051995 TAATTCTATAAAT
66 TAATTCTATAAAT
84052008 TAGGGGTACT
Statistics
Matches: 141, Mismatches: 18, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
81 141 1.00
ACGTcount: A:0.42, C:0.07, G:0.21, T:0.30
Consensus pattern (81 bp):
GGGTAAAACAGTAATTTTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATGG
TAATTCTATAAATCGA
Found at i:84054228 original size:6 final size:6
Alignment explanation
Indices: 84054210--84054297 Score: 56
Period size: 6 Copynumber: 14.3 Consensus size: 6
84054200 AAGAAACATT
* *
84054210 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAG- GTGACAAA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * * *
84054259 ATCAGA ATTAGT ATCAGGTA A-CAGA ATCAAA ATCTGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
84054298 GTGAATGCAA
Statistics
Matches: 63, Mismatches: 11, Indels: 16
0.70 0.12 0.18
Matches are distributed among these distances:
5 4 0.06
6 51 0.81
7 6 0.10
8 2 0.03
ACGTcount: A:0.48, C:0.15, G:0.17, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:84054231 original size:18 final size:18
Alignment explanation
Indices: 84054210--84054297 Score: 56
Period size: 19 Copynumber: 4.8 Consensus size: 18
84054200 AAGAAACATT
84054210 ATCAGAA-CTAGAATCAGA
1 ATCAGAATC-AGAATCAGA
84054228 ATCAGAATCAGAATCAG-
1 ATCAGAATCAGAATCAGA
* *
84054245 GTGACAAAATCAGAATCAGA
1 AT--CAGAATCAGAATCAGA
* *
84054265 ATTAGTATCAGGTAA-CAGA
1 ATCAGAATCA-G-AATCAGA
* *
84054284 ATCAAAATCTGAAT
1 ATCAGAATCAGAAT
84054298 GTGAATGCAA
Statistics
Matches: 53, Mismatches: 10, Indels: 14
0.69 0.13 0.18
Matches are distributed among these distances:
17 3 0.06
18 21 0.40
19 26 0.49
20 3 0.06
ACGTcount: A:0.48, C:0.15, G:0.17, T:0.20
Consensus pattern (18 bp):
ATCAGAATCAGAATCAGA
Found at i:84054259 original size:31 final size:31
Alignment explanation
Indices: 84054221--84054297 Score: 100
Period size: 31 Copynumber: 2.5 Consensus size: 31
84054211 TCAGAACTAG
*
84054221 AATCAGAATCAGAATCAGAATCAGGTGACAA
1 AATCAGAATCAGAATCAGAATCAGGTAACAA
* * *
84054252 AATCAGAATCAGAATTAGTATCAGGTAACAG
1 AATCAGAATCAGAATCAGAATCAGGTAACAA
* *
84054283 AATCAAAATCTGAAT
1 AATCAGAATCAGAAT
84054298 GTGAATGCAA
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.48, C:0.14, G:0.17, T:0.21
Consensus pattern (31 bp):
AATCAGAATCAGAATCAGAATCAGGTAACAA
Found at i:84054462 original size:27 final size:26
Alignment explanation
Indices: 84054416--84054475 Score: 84
Period size: 27 Copynumber: 2.3 Consensus size: 26
84054406 ACGAGGCTGC
84054416 CAGATATTGTGACAAAGTCACCAGATA
1 CAGATATTGTGACAAAGTCACCAGA-A
* * *
84054443 CAGATATTGTGGCTAGGTCACCAGAA
1 CAGATATTGTGACAAAGTCACCAGAA
84054469 CAGATAT
1 CAGATAT
84054476 ATTTATATAT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 8 0.27
27 22 0.73
ACGTcount: A:0.37, C:0.18, G:0.22, T:0.23
Consensus pattern (26 bp):
CAGATATTGTGACAAAGTCACCAGAA
Found at i:84054977 original size:27 final size:27
Alignment explanation
Indices: 84054811--84054970 Score: 203
Period size: 27 Copynumber: 5.9 Consensus size: 27
84054801 TAACACCTAG
* * *
84054811 GGGTAAAATGGTAATTTTATAAATCAA
1 GGGTAAAACGGTAATTCTATAAATCGA
* *
84054838 GGTTAAAACGATAATTCTATAAATCGA
1 GGGTAAAACGGTAATTCTATAAATCGA
*
84054865 GGGTAAAACGGTAATTCTACAAATCGA
1 GGGTAAAACGGTAATTCTATAAATCGA
** * * *
84054892 GGGTAAAATAGTAATTTTGTAAATCAA
1 GGGTAAAACGGTAATTCTATAAATCGA
*
84054919 GGGTAAAACGGTAATTCTTTAAATCGA
1 GGGTAAAACGGTAATTCTATAAATCGA
*
84054946 GGGTAAATCGGTAATTCTATAAATC
1 GGGTAAAACGGTAATTCTATAAATC
84054971 AGTGGTACTT
Statistics
Matches: 112, Mismatches: 21, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 112 1.00
ACGTcount: A:0.41, C:0.09, G:0.19, T:0.30
Consensus pattern (27 bp):
GGGTAAAACGGTAATTCTATAAATCGA
Found at i:84054990 original size:81 final size:81
Alignment explanation
Indices: 84054811--84054970 Score: 257
Period size: 81 Copynumber: 2.0 Consensus size: 81
84054801 TAACACCTAG
*
84054811 GGGTAAAATGGTAATTTTATAAATCAAGGTTAAAACGATAATTCTATAAATCGAGGGTAAAACGG
1 GGGTAAAATGGTAATTTTATAAATCAAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACGG
84054876 TAATTCTACAAATCGA
66 TAATTCTACAAATCGA
* * * * *
84054892 GGGTAAAATAGTAATTTTGTAAATCAAGGGTAAAACGGTAATTCTTTAAATCGAGGGTAAATCGG
1 GGGTAAAATGGTAATTTTATAAATCAAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACGG
*
84054957 TAATTCTATAAATC
66 TAATTCTACAAATC
84054971 AGTGGTACTT
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
81 72 1.00
ACGTcount: A:0.41, C:0.09, G:0.19, T:0.30
Consensus pattern (81 bp):
GGGTAAAATGGTAATTTTATAAATCAAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACGG
TAATTCTACAAATCGA
Found at i:84055076 original size:27 final size:27
Alignment explanation
Indices: 84054955--84055204 Score: 220
Period size: 27 Copynumber: 9.3 Consensus size: 27
84054945 AGGGTAAATC
* * *
84054955 GGTAATTCTATAAATC-AGTGGTACTTT
1 GGTAATTTTACAAATCAAG-GGTATTTT
* *
84054982 GGTAATTTTACAAGTCGAA-GGTATTTC
1 GGTAATTTTACAAATC-AAGGGTATTTT
** * * *
84055009 AATAATTTTACAAGTCGAGGGTATTTC
1 GGTAATTTTACAAATCAAGGGTATTTT
* *
84055036 AGTAATTTCACAAATCAAGGGTATTTT
1 GGTAATTTTACAAATCAAGGGTATTTT
* * *
84055063 GGTAATTCTACAAACCAGGGGTATTTT
1 GGTAATTTTACAAATCAAGGGTATTTT
** *
84055090 GGTAATTTTGTAAACCAAGGGTATTTT
1 GGTAATTTTACAAATCAAGGGTATTTT
* * *
84055117 GATAATTTTACAAACCAGGGGTATTTT
1 GGTAATTTTACAAATCAAGGGTATTTT
* *
84055144 GGTGATTTTATAAA-CTAAGGGTATTTT
1 GGTAATTTTACAAATC-AAGGGTATTTT
* *
84055171 AGTAATTTTACAAA-CCAGGGTATTTT
1 GGTAATTTTACAAATCAAGGGTATTTT
84055197 GGTAATTT
1 GGTAATTT
84055205 GGTACATTAA
Statistics
Matches: 184, Mismatches: 35, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
26 19 0.10
27 164 0.89
29 1 0.01
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
GGTAATTTTACAAATCAAGGGTATTTT
Found at i:84058379 original size:27 final size:26
Alignment explanation
Indices: 84058331--84058382 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
84058321 GCGAGGCTGC
*
84058331 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
84058357 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
84058383 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:84059068 original size:27 final size:26
Alignment explanation
Indices: 84059022--84059140 Score: 123
Period size: 27 Copynumber: 4.4 Consensus size: 26
84059012 GGGGCAAAAT
* * * *
84059022 GGTAATTTTACCCCACAAGGATATCTC
1 GGTAATTCTA-CCTACAAGGGTATTTC
*
84059049 GGTGATTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACC-TACAAGGGTATTTC
* *
84059076 GGTATTTCTACCCTACAAGGGTATTTT
1 GGTAATTCTA-CCTACAAGGGTATTTC
84059103 GGTAATTCTATCCTAC-AGAGGTATTTC
1 GGTAATTCTA-CCTACAAG-GGTATTTC
84059130 GGTAATTCTAC
1 GGTAATTCTAC
84059141 TTATCCACTT
Statistics
Matches: 78, Mismatches: 11, Indels: 7
0.81 0.11 0.07
Matches are distributed among these distances:
26 5 0.06
27 71 0.91
28 2 0.03
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.36
Consensus pattern (26 bp):
GGTAATTCTACCTACAAGGGTATTTC
Found at i:84059094 original size:54 final size:54
Alignment explanation
Indices: 84059026--84059140 Score: 137
Period size: 54 Copynumber: 2.1 Consensus size: 54
84059016 CAAAATGGTA
*
84059026 ATTT-TACCCCACAAGGATATCTCGGTGATTCTA-CCTTACA-AGGGTATTTCGGT
1 ATTTCTACCCCACAAGGATATCTCGGTAATTCTATCC-TACAGA-GGTATTTCGGT
* * * *
84059079 ATTTCTACCCTACAAGGGTATTTTGGTAATTCTATCCTACAGAGGTATTTCGGT
1 ATTTCTACCCCACAAGGATATCTCGGTAATTCTATCCTACAGAGGTATTTCGGT
*
84059133 AATTCTAC
1 ATTTCTAC
84059141 TTATCCACTT
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
53 4 0.08
54 46 0.87
55 3 0.06
ACGTcount: A:0.25, C:0.21, G:0.17, T:0.37
Consensus pattern (54 bp):
ATTTCTACCCCACAAGGATATCTCGGTAATTCTATCCTACAGAGGTATTTCGGT
Found at i:84062892 original size:19 final size:18
Alignment explanation
Indices: 84062868--84063023 Score: 60
Period size: 19 Copynumber: 8.8 Consensus size: 18
84062858 AAAGAATTAT
*
84062868 TTTTATAATTTTTAATAAC
1 TTTTATAATTTTTAA-AAA
*
84062887 TTTTATATTTTTTAAAAA
1 TTTTATAATTTTTAAAAA
* * *
84062905 TTATGATAATTTTT-ATAT
1 TT-TTATAATTTTTAAAAA
* *
84062923 TTTTATCA-TTTTATATAA
1 TTTTATAATTTTTA-AAAA
* *
84062941 TTTCATATAATTTTT-TATA
1 TTT--TATAATTTTTAAAAA
*
84062960 TTTTAT-ATATTT--AAA
1 TTTTATAATTTTTAAAAA
* ***
84062975 TTTT-TAGTTTTT-ATTT
1 TTTTATAATTTTTAAAAA
*
84062991 TTTTATAATTTTTATAATA
1 TTTTATAATTTTTA-AAAA
84063010 TTTTAT-ATTTTTAA
1 TTTTATAATTTTTAA
84063024 CATTTTTCTA
Statistics
Matches: 103, Mismatches: 23, Indels: 24
0.69 0.15 0.16
Matches are distributed among these distances:
14 1 0.01
15 10 0.10
16 13 0.13
17 15 0.15
18 21 0.20
19 35 0.34
20 4 0.04
21 4 0.04
ACGTcount: A:0.33, C:0.02, G:0.01, T:0.64
Consensus pattern (18 bp):
TTTTATAATTTTTAAAAA
Found at i:84062926 original size:8 final size:8
Alignment explanation
Indices: 84062913--84063022 Score: 80
Period size: 8 Copynumber: 12.9 Consensus size: 8
84062903 AATTATGATA
84062913 ATTTTTAT
1 ATTTTTAT
84062921 ATTTTTAT
1 ATTTTTAT
84062929 CATTTTATAT
1 -ATTTT-TAT
*
84062939 AATTTCATAT
1 -ATTT-TTAT
84062949 AATTTTT-T
1 -ATTTTTAT
84062957 ATATTTTAT
1 AT-TTTTAT
* *
84062966 ATATTTAA
1 ATTTTTAT
84062974 ATTTTTA-
1 ATTTTTAT
*
84062981 GTTTTTAT
1 ATTTTTAT
*
84062989 TTTTTTAT
1 ATTTTTAT
84062997 AATTTTTAT
1 -ATTTTTAT
84063006 AATATTTTAT
1 -AT-TTTTAT
84063016 ATTTTTA
1 ATTTTTA
84063023 ACATTTTTCT
Statistics
Matches: 85, Mismatches: 9, Indels: 16
0.77 0.08 0.15
Matches are distributed among these distances:
7 8 0.09
8 35 0.41
9 21 0.25
10 21 0.25
ACGTcount: A:0.30, C:0.02, G:0.01, T:0.67
Consensus pattern (8 bp):
ATTTTTAT
Found at i:84062936 original size:28 final size:27
Alignment explanation
Indices: 84062865--84063022 Score: 92
Period size: 28 Copynumber: 5.6 Consensus size: 27
84062855 ACAAAAGAAT
*
84062865 TATTTTTATAATTTT-TAATAACTTTTA
1 TATTTTTATAATTTTAT-ATAATTTTTA
**
84062892 TATTTTT-TAAAAATTATGATAATTTTTA
1 TATTTTTAT-AATTTTAT-ATAATTTTTA
* *
84062920 TATTTTTATCATTTTATATAATTTCATA
1 TATTTTTATAATTTTATATAATTT-TTA
*
84062948 TAATTTTTTATATTTTATATATTTAAATTTTTA
1 T-A-TTTTTATAATTT-TATA--T-AATTTTTA
* *
84062981 -GTTTTTAT--TTTTTTATAATTTTTA
1 TATTTTTATAATTTTATATAATTTTTA
*
84063005 TAATATTTTATATTTTTA
1 T-AT-TTTTATAATTTTA
84063023 ACATTTTTCT
Statistics
Matches: 101, Mismatches: 15, Indels: 28
0.70 0.10 0.19
Matches are distributed among these distances:
24 8 0.08
25 1 0.01
26 2 0.02
27 27 0.27
28 28 0.28
29 6 0.06
30 17 0.17
31 4 0.04
33 3 0.03
34 5 0.05
ACGTcount: A:0.32, C:0.02, G:0.01, T:0.65
Consensus pattern (27 bp):
TATTTTTATAATTTTATATAATTTTTA
Found at i:84062986 original size:23 final size:24
Alignment explanation
Indices: 84062916--84063019 Score: 81
Period size: 23 Copynumber: 4.1 Consensus size: 24
84062906 TATGATAATT
84062916 TTTAT-ATTTTTATCATTTTATATAA
1 TTTATAATTTTTAT-ATTTTATAT-A
84062941 TTTCATATAATTTTTTATATTTTATATA
1 -TT--TATAA-TTTTTATATTTTATATA
* *
84062969 TTTA-AATTTTTAGT-TTTTATTTT
1 TTTATAATTTTTA-TATTTTATATA
84062992 TTTATAATTTTTATAATATTT-TATA
1 TTTATAATTTTTAT-AT-TTTATATA
84063017 TTT
1 TTT
84063020 TTAACATTTT
Statistics
Matches: 65, Mismatches: 4, Indels: 19
0.74 0.05 0.22
Matches are distributed among these distances:
23 18 0.28
24 11 0.17
25 8 0.12
26 5 0.08
27 2 0.03
28 4 0.06
29 10 0.15
30 7 0.11
ACGTcount: A:0.30, C:0.02, G:0.01, T:0.67
Consensus pattern (24 bp):
TTTATAATTTTTATATTTTATATA
Found at i:84063012 original size:11 final size:9
Alignment explanation
Indices: 84062866--84063022 Score: 107
Period size: 9 Copynumber: 17.8 Consensus size: 9
84062856 CAAAAGAATT
84062866 ATTTTTATA
1 ATTTTTATA
84062875 ATTTTTAATA
1 ATTTTT-ATA
*
84062885 ACTTTTATA
1 ATTTTTATA
* *
84062894 TTTTTTAAAA
1 ATTTTT-ATA
* *
84062904 ATTATGATA
1 ATTTTTATA
84062913 ATTTTTAT-
1 ATTTTTATA
*
84062921 ATTTTTATC
1 ATTTTTATA
84062930 ATTTTATATA
1 ATTTT-TATA
*
84062940 ATTTCATATA
1 ATTT-TTATA
84062950 ATTTTT-T-
1 ATTTTTATA
84062957 ATATTTTAT-
1 AT-TTTTATA
*
84062966 ATATTTA-A
1 ATTTTTATA
84062974 A-TTTT-TA
1 ATTTTTATA
*
84062981 GTTTTTAT-
1 ATTTTTATA
*
84062989 TTTTTTATA
1 ATTTTTATA
84062998 ATTTTTATA
1 ATTTTTATA
84063007 ATATTTTAT-
1 AT-TTTTATA
84063016 ATTTTTA
1 ATTTTTA
84063023 ACATTTTTCT
Statistics
Matches: 117, Mismatches: 18, Indels: 27
0.72 0.11 0.17
Matches are distributed among these distances:
7 6 0.05
8 34 0.29
9 43 0.37
10 34 0.29
ACGTcount: A:0.32, C:0.02, G:0.01, T:0.64
Consensus pattern (9 bp):
ATTTTTATA
Found at i:84063029 original size:38 final size:37
Alignment explanation
Indices: 84062987--84063088 Score: 98
Period size: 38 Copynumber: 2.7 Consensus size: 37
84062977 TTTAGTTTTT
84062987 ATTTTTTTATAATTTTTATAATATTTTATATTTTT-AAC
1 ATTTTTTTATAATTTTTATAA-ATTTTA-ATTTTTCAAC
* * * * * *
84063025 ATTTTTCTATTATTTTTTTCAATTTTAATTTTTCTAT
1 ATTTTTTTATAATTTTTATAAATTTTAATTTTTCAAC
*
84063062 AGTTTTCTTTATAAATTTTATAAATTT
1 A-TTTT-TTTATAATTTTTATAAATTT
84063089 CTAAATTTGT
Statistics
Matches: 50, Mismatches: 11, Indels: 5
0.76 0.17 0.08
Matches are distributed among these distances:
36 6 0.12
37 8 0.16
38 21 0.42
39 15 0.30
ACGTcount: A:0.28, C:0.05, G:0.01, T:0.66
Consensus pattern (37 bp):
ATTTTTTTATAATTTTTATAAATTTTAATTTTTCAAC
Found at i:84063042 original size:50 final size:48
Alignment explanation
Indices: 84062946--84063043 Score: 119
Period size: 50 Copynumber: 2.0 Consensus size: 48
84062936 TATAATTTCA
* *
84062946 TATAATTTTTTATATTTTATATATTTAAATTTTTAGTTTTTATTTTTT
1 TATAATTTTTTATATTTTATATATTTAAATTTTTACTTTATATTTTTT
* *
84062994 TATAATTTTTATAATATTTTATATTTTTAACATTTTT-CTAT-TATTTTTT
1 TATAATTTTT-T-ATATTTTATATATTTAA-ATTTTTACTTTATATTTTTT
84063043 T
1 T
84063044 CAATTTTAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
48 10 0.23
49 10 0.23
50 18 0.41
51 6 0.14
ACGTcount: A:0.28, C:0.02, G:0.01, T:0.69
Consensus pattern (48 bp):
TATAATTTTTTATATTTTATATATTTAAATTTTTACTTTATATTTTTT
Found at i:84063808 original size:16 final size:17
Alignment explanation
Indices: 84063777--84063809 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
84063767 TAATATTTTA
84063777 AAAATATTAATTTAATAT
1 AAAATATT-ATTTAATAT
84063795 AAAATATT-TTTAATA
1 AAAATATTATTTAATA
84063810 CTATAATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
18 8 0.53
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (17 bp):
AAAATATTATTTAATAT
Found at i:84063891 original size:5 final size:5
Alignment explanation
Indices: 84063881--84063918 Score: 76
Period size: 5 Copynumber: 7.6 Consensus size: 5
84063871 AACTTCAAAG
84063881 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATA
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATA
84063919 TAACTATTAC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 33 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
ATAAT
Found at i:84063932 original size:27 final size:27
Alignment explanation
Indices: 84063882--84063979 Score: 75
Period size: 24 Copynumber: 3.7 Consensus size: 27
84063872 ACTTCAAAGA
84063882 TAATATAATATAATATA-ATA-TAATA-
1 TAATATAATATAATATATA-ACTAATAC
*
84063907 TAATATAATAT-ATAACTATTACTAATAC
1 TAATATAATATAAT-A-TATAACTAATAC
* * *
84063935 ATAAAATAATATAATATATAAGTATTAC
1 -TAATATAATATAATATATAACTAATAC
84063963 T-A-A-AATATAATATATAA
1 TAATATAATATAATATATAA
84063980 TTATTATTAT
Statistics
Matches: 61, Mismatches: 5, Indels: 15
0.75 0.06 0.19
Matches are distributed among these distances:
24 16 0.26
25 13 0.21
26 4 0.07
27 6 0.10
28 9 0.15
29 11 0.18
30 2 0.03
ACGTcount: A:0.57, C:0.04, G:0.01, T:0.38
Consensus pattern (27 bp):
TAATATAATATAATATATAACTAATAC
Found at i:84063949 original size:34 final size:33
Alignment explanation
Indices: 84063897--84064000 Score: 112
Period size: 34 Copynumber: 3.3 Consensus size: 33
84063887 TAATATAATA
*
84063897 TAAT-ATAATATAATATAATATATAACTATTAC
1 TAATAATAAAATAATATAATATATAACTATTAC
*
84063929 TAATACATAAAATAATATAATATATAAGTATTAC
1 TAATA-ATAAAATAATATAATATATAACTATTAC
* * *
84063963 TAA-AATATAAT-ATATAAT-TATTATTATTAC
1 TAATAATAAAATAATATAATATATAACTATTAC
84063993 -AAT-ATAAA
1 TAATAATAAA
84064001 TTATAACAAA
Statistics
Matches: 63, Mismatches: 6, Indels: 9
0.81 0.08 0.12
Matches are distributed among these distances:
29 6 0.10
30 10 0.16
31 7 0.11
32 10 0.16
33 1 0.02
34 29 0.46
ACGTcount: A:0.55, C:0.05, G:0.01, T:0.39
Consensus pattern (33 bp):
TAATAATAAAATAATATAATATATAACTATTAC
Found at i:84074969 original size:13 final size:14
Alignment explanation
Indices: 84074951--84074983 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
84074941 ATTTTATATT
84074951 ATATTAGTTTA-TA
1 ATATTAGTTTACTA
84074964 ATATTAGTTTACTA
1 ATATTAGTTTACTA
84074978 A-ATTAG
1 ATATTAG
84074984 CCTTAATGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 16 0.84
14 3 0.16
ACGTcount: A:0.39, C:0.03, G:0.09, T:0.48
Consensus pattern (14 bp):
ATATTAGTTTACTA
Found at i:84076593 original size:33 final size:33
Alignment explanation
Indices: 84076556--84076623 Score: 127
Period size: 33 Copynumber: 2.1 Consensus size: 33
84076546 TATATTGTTC
*
84076556 ACTAGTGGATACATACACATTTGGCGAATACTT
1 ACTAGTGGATACATACACATTTGGCAAATACTT
84076589 ACTAGTGGATACATACACATTTGGCAAATACTT
1 ACTAGTGGATACATACACATTTGGCAAATACTT
84076622 AC
1 AC
84076624 GCAAATCTGA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.29
Consensus pattern (33 bp):
ACTAGTGGATACATACACATTTGGCAAATACTT
Found at i:84079129 original size:47 final size:48
Alignment explanation
Indices: 84079048--84079256 Score: 170
Period size: 46 Copynumber: 4.5 Consensus size: 48
84079038 GCAGATGCCG
* * *
84079048 TGTCCCAGACACGGTCTTACACTGGCTTAT-ATCTC-AAGTCGAAGCCA
1 TGTCCCAGACATGGTCTTACACAGGC-TATCATCTCGAAGCCGAAGCCA
* * *
84079095 TGTCCTAGACATGGTCTTACACAGACTATCATCTCGTAGCCG-A-CACA
1 TGTCCCAGACATGGTCTTACACAGGCTATCATCTCGAAGCCGAAGC-CA
* * * * *
84079142 TGTCCCAAACAT-GTCTTACACTGGCT-TACGTCTCGAGGCCGATG-CA
1 TGTCCCAGACATGGTCTTACACAGGCTAT-CATCTCGAAGCCGAAGCCA
* *
84079188 TGTCCCAGACAT-GTCTTACACTA-GC-ACTCGTCTC-AATGCCGATGCCA
1 TGTCCCAGACATGGTCTTACAC-AGGCTA-TCATCTCGAA-GCCGAAGCCA
84079235 TGTCCCAGACATGGTCTTACAC
1 TGTCCCAGACATGGTCTTACAC
84079257 TAGCTCTCAC
Statistics
Matches: 133, Mismatches: 17, Indels: 23
0.77 0.10 0.13
Matches are distributed among these distances:
45 2 0.02
46 63 0.47
47 55 0.41
48 13 0.10
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (48 bp):
TGTCCCAGACATGGTCTTACACAGGCTATCATCTCGAAGCCGAAGCCA
Found at i:84080770 original size:30 final size:30
Alignment explanation
Indices: 84080734--84080794 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
84080724 CTCTTCGATT
84080734 TTTAGATTGTACATGAAACCAAGATAGTTA
1 TTTAGATTGTACATGAAACCAAGATAGTTA
84080764 TTTAGATTGTACATGAAACCAAGATAGTTA
1 TTTAGATTGTACATGAAACCAAGATAGTTA
84080794 T
1 T
84080795 CTCTCCCCCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.39, C:0.10, G:0.16, T:0.34
Consensus pattern (30 bp):
TTTAGATTGTACATGAAACCAAGATAGTTA
Found at i:84086271 original size:43 final size:42
Alignment explanation
Indices: 84086224--84086380 Score: 151
Period size: 43 Copynumber: 3.7 Consensus size: 42
84086214 TATGTGTTTT
*
84086224 CGTGTAAGACCATGTCTAGGACGTTGGCATCGATCTGTGATTA
1 CGTGTAAGACCATGTCTGGGACGTTGGCATCGAT-TGTGATTA
* **
84086267 CGTGTAAGACCATGTCTGGGACATTGATATCGTATT-TGATT-
1 CGTGTAAGACCATGTCTGGGACGTTGGCATCG-ATTGTGATTA
* * * *
84086308 CGTGTAAGACCCTATCTTGGACAG-TGGCATCGATATGAGA-TA
1 CGTGTAAGACCATGTCTGGGAC-GTTGGCATCGAT-TGTGATTA
* *
84086350 GCATGTAAGACCACGTCTGGGACGTTGGCAT
1 -CGTGTAAGACCATGTCTGGGACGTTGGCAT
84086381 TGTTGATATA
Statistics
Matches: 91, Mismatches: 16, Indels: 14
0.75 0.13 0.12
Matches are distributed among these distances:
40 2 0.02
41 27 0.30
42 8 0.09
43 52 0.57
44 2 0.02
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (42 bp):
CGTGTAAGACCATGTCTGGGACGTTGGCATCGATTGTGATTA
Found at i:84091305 original size:47 final size:47
Alignment explanation
Indices: 84091254--84091358 Score: 192
Period size: 47 Copynumber: 2.2 Consensus size: 47
84091244 TAGTATTAAT
*
84091254 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
84091301 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
84091348 AATGTGATAAG
1 TATGTGATAAG
84091359 TCCCGAAGGG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 56 1.00
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
Found at i:84093399 original size:38 final size:38
Alignment explanation
Indices: 84093297--84093401 Score: 115
Period size: 38 Copynumber: 2.8 Consensus size: 38
84093287 AATCCGAGTT
* * * *
84093297 TAAAGACCCGCTGACTATATGTAGAGATTATGTCCGGG
1 TAAAGACCCGATGGCTATATATAGAGATTATGTCCGGA
* *
84093335 TAAAGACCCGATGGCTATGTACAGAGATTATGTCCGGA
1 TAAAGACCCGATGGCTATATATAGAGATTATGTCCGGA
*
84093373 TTAAGACCC-ACTGGCT-TCATATAGAGATT
1 TAAAGACCCGA-TGGCTAT-ATATAGAGATT
84093402 TCATCTGAGC
Statistics
Matches: 56, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
37 2 0.04
38 54 0.96
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (38 bp):
TAAAGACCCGATGGCTATATATAGAGATTATGTCCGGA
Found at i:84093485 original size:40 final size:40
Alignment explanation
Indices: 84093429--84093702 Score: 462
Period size: 40 Copynumber: 6.9 Consensus size: 40
84093419 CTCGACGATG
* * **
84093429 ATCCGGGCTAAGTCCCGAAAGGCATTCGTGTTGGTGTTAT
1 ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
84093469 ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
1 ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
*
84093509 ATCCGGGCT-AATCCCGAAGGGCATTCATGCC-GTGTTAT
1 ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
84093547 ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
1 ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
84093587 ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
1 ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
* *
84093627 ATCCGGGCTAAATCCCGAAGGGTATTCGTGCCGATGTTAT
1 ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
*
84093667 ATCCGGGCTAAGTCCCGAAGGGCATTCGTGCCGGTG
1 ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTG
84093703 ATGTGTATTC
Statistics
Matches: 221, Mismatches: 11, Indels: 4
0.94 0.05 0.02
Matches are distributed among these distances:
38 16 0.07
39 42 0.19
40 163 0.74
ACGTcount: A:0.20, C:0.24, G:0.30, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
Found at i:84093637 original size:118 final size:120
Alignment explanation
Indices: 84093429--84093702 Score: 480
Period size: 118 Copynumber: 2.3 Consensus size: 120
84093419 CTCGACGATG
* **
84093429 ATCCGGGCTAAGTCCCGAAAGGCATTCGTGTTGGTGTTATATCCGGGCTAAATCCCGAAGGGCAT
1 ATCCGGGCTAAGTCCCGAAGGGCATTCGTGCCGGTGTTATATCCGGGCTAAATCCCGAAGGGCAT
84093494 TCGTGCCGGTGTTATATCCGGGCT-AATCCCGAAGGGCATTCATGCCG-TGTTAT
66 TCGTGCCGGTGTTATATCCGGGCTAAATCCCGAAGGGCATTCATGCCGATGTTAT
*
84093547 ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTATATCCGGGCTAAATCCCGAAGGGCAT
1 ATCCGGGCTAAGTCCCGAAGGGCATTCGTGCCGGTGTTATATCCGGGCTAAATCCCGAAGGGCAT
* *
84093612 TCGTGCCGGTGTTATATCCGGGCTAAATCCCGAAGGGTATTCGTGCCGATGTTAT
66 TCGTGCCGGTGTTATATCCGGGCTAAATCCCGAAGGGCATTCATGCCGATGTTAT
84093667 ATCCGGGCTAAGTCCCGAAGGGCATTCGTGCCGGTG
1 ATCCGGGCTAAGTCCCGAAGGGCATTCGTGCCGGTG
84093703 ATGTGTATTC
Statistics
Matches: 147, Mismatches: 7, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
118 85 0.58
119 21 0.14
120 41 0.28
ACGTcount: A:0.20, C:0.24, G:0.30, T:0.26
Consensus pattern (120 bp):
ATCCGGGCTAAGTCCCGAAGGGCATTCGTGCCGGTGTTATATCCGGGCTAAATCCCGAAGGGCAT
TCGTGCCGGTGTTATATCCGGGCTAAATCCCGAAGGGCATTCATGCCGATGTTAT
Found at i:84098152 original size:47 final size:47
Alignment explanation
Indices: 84098101--84098205 Score: 192
Period size: 47 Copynumber: 2.2 Consensus size: 47
84098091 TAGTATTAAT
*
84098101 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
84098148 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
84098195 AATGTGATAAG
1 TATGTGATAAG
84098206 TCCCGAAGGG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 56 1.00
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
Found at i:84103226 original size:49 final size:49
Alignment explanation
Indices: 84103070--84103238 Score: 248
Period size: 49 Copynumber: 3.4 Consensus size: 49
84103060 ATACTCAGTT
84103070 GCCTGCACTTAGTACTACACATGCGACCAATTATCCGATACACGTAGTA
1 GCCTGCACTTAGTACTACACATGCGACCAATTATCCGATACACGTAGTA
* * * ** *
84103119 GCTTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTA
1 GCCTGCACTTAGTACTACACATGCGACC-AATTATCCGATACACGTAGTA
* *
84103169 GCCTGCACTTAGTATTACACATGCGACCAATTATCCGGTACACGTAGTA
1 GCCTGCACTTAGTACTACACATGCGACCAATTATCCGATACACGTAGTA
*
84103218 GCCAGCACTTAGTACTACACA
1 GCCTGCACTTAGTACTACACA
84103239 CGTGACCTCA
Statistics
Matches: 103, Mismatches: 16, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
49 61 0.59
50 42 0.41
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (49 bp):
GCCTGCACTTAGTACTACACATGCGACCAATTATCCGATACACGTAGTA
Found at i:84103522 original size:27 final size:27
Alignment explanation
Indices: 84103492--84103545 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
84103482 TCATACAACC
* *
84103492 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
84103519 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
84103546 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:84106844 original size:40 final size:40
Alignment explanation
Indices: 84106798--84106898 Score: 166
Period size: 40 Copynumber: 2.5 Consensus size: 40
84106788 TCTCGCATAT
*
84106798 TAAGTGCCATATATAGCTGAAGCTATCCCAAATCGCACAC
1 TAAGTGCCATATATAGCCGAAGCTATCCCAAATCGCACAC
* *
84106838 TAAGTGCCATATATAGCCGAAGCTATCTCGAATCGCACAC
1 TAAGTGCCATATATAGCCGAAGCTATCCCAAATCGCACAC
*
84106878 TAAGTGCCATATATAGTCGAA
1 TAAGTGCCATATATAGCCGAA
84106899 TTGTTTTCAA
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 57 1.00
ACGTcount: A:0.35, C:0.25, G:0.17, T:0.24
Consensus pattern (40 bp):
TAAGTGCCATATATAGCCGAAGCTATCCCAAATCGCACAC
Found at i:84107369 original size:21 final size:20
Alignment explanation
Indices: 84107345--84107383 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
84107335 AAACTTGTAT
84107345 ATCTATCAACAAACATTCATA
1 ATCTATCAACAAAC-TTCATA
*
84107366 ATCTATCAAGAAACTTCA
1 ATCTATCAACAAACTTCA
84107384 AAATACACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.46, C:0.23, G:0.03, T:0.28
Consensus pattern (20 bp):
ATCTATCAACAAACTTCATA
Found at i:84116260 original size:48 final size:48
Alignment explanation
Indices: 84116189--84116867 Score: 1126
Period size: 48 Copynumber: 14.0 Consensus size: 48
84116179 CAAGATAAAT
* *
84116189 ATATGTATATGTGGTAAAGCCGAATCGATAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
84116237 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAG
* *
84116287 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAG
* *
84116337 ATATATATATGTGGTAAAGCCGAATGGTTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
84116385 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
84116433 ATATGTATATGTGGTGAAGCCGAATGGTTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
84116481 ATATGTATATGTGGTGAAGCCGAATGGTTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
84116529 ATATGTATATGTGGTGAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
84116577 ATATGTATATGTGGTGAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
84116625 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
84116673 ATATGTAT-TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
84116720 ATATGTATATGTGGTAAAGCCAAATGGCTAATGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAG
*
84116770 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
84116818 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
84116866 AT
1 AT
84116868 GTGTGTACAT
Statistics
Matches: 604, Mismatches: 22, Indels: 10
0.95 0.03 0.02
Matches are distributed among these distances:
47 47 0.08
48 415 0.69
49 8 0.01
50 134 0.22
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.32
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:84117153 original size:37 final size:37
Alignment explanation
Indices: 84117008--84117152 Score: 245
Period size: 37 Copynumber: 3.9 Consensus size: 37
84116998 GGAAATATAT
84117008 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
84117045 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATA
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
84117082 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
84117119 TCCGGGTAAGACCCGATAACTTCATGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
84117153 TCATCTGAGC
Statistics
Matches: 102, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 102 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:84136214 original size:15 final size:14
Alignment explanation
Indices: 84136194--84136229 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
84136184 AGCATGTTTA
84136194 ATCTGATAATTCTGT
1 ATCTGAT-ATTCTGT
*
84136209 ATCTGATTTTCTGT
1 ATCTGATATTCTGT
84136223 ATCTGAT
1 ATCTGAT
84136230 TTGGGATGGG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 13 0.65
15 7 0.35
ACGTcount: A:0.22, C:0.14, G:0.14, T:0.50
Consensus pattern (14 bp):
ATCTGATATTCTGT
Found at i:84136222 original size:14 final size:14
Alignment explanation
Indices: 84136203--84136231 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
84136193 AATCTGATAA
84136203 TTCTGTATCTGATT
1 TTCTGTATCTGATT
84136217 TTCTGTATCTGATT
1 TTCTGTATCTGATT
84136231 T
1 T
84136232 GGGATGGGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.14, T:0.59
Consensus pattern (14 bp):
TTCTGTATCTGATT
Found at i:84137637 original size:13 final size:13
Alignment explanation
Indices: 84137619--84137644 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
84137609 ATATTATAAT
84137619 TATTTTATGTTAA
1 TATTTTATGTTAA
84137632 TATTTTATGTTAA
1 TATTTTATGTTAA
84137645 AAATAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:84139067 original size:40 final size:40
Alignment explanation
Indices: 84139019--84139184 Score: 262
Period size: 40 Copynumber: 4.2 Consensus size: 40
84139009 GGACTAAGAT
84139019 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
* *
84139059 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTATGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
*
84139099 CCGAAGGCATTTGTGCTAGTTACTATATCTGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
* * * *
84139139 CCGATGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
84139178 CCGAAGG
1 CCGAAGG
84139185 TACTTGGGTT
Statistics
Matches: 115, Mismatches: 11, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
39 14 0.12
40 101 0.88
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.30
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
Found at i:84145697 original size:13 final size:13
Alignment explanation
Indices: 84145679--84145704 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
84145669 ATATTATAAT
84145679 TATTTTATGTTAA
1 TATTTTATGTTAA
84145692 TATTTTATGTTAA
1 TATTTTATGTTAA
84145705 AAATAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:84147126 original size:40 final size:40
Alignment explanation
Indices: 84147078--84147363 Score: 457
Period size: 40 Copynumber: 7.2 Consensus size: 40
84147068 GGACTAAGAT
84147078 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
*
84147118 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
* *
84147158 CCGAAGGCATTTGTGCTAGTTATTATATCTGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
* *
84147198 CCGAAGGCATTTGTGCTAGTGACTATATTCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
* * *
84147238 CCGAAGGCATTTGTTCTAGTGACTATATCCAGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
*
84147278 CCGAAGGCATCTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
* * *
84147318 CCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
84147357 CCGAAGG
1 CCGAAGG
84147364 TACTTGGGTT
Statistics
Matches: 227, Mismatches: 19, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
39 15 0.07
40 212 0.93
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.29
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
Done.