Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 245 of 295
Found at i:84154139 original size:40 final size:40
Alignment explanation
Indices: 84154081--84154314 Score: 315
Period size: 40 Copynumber: 5.8 Consensus size: 40
84154071 TTTGGATGAT
* ** * *
84154081 AACCGGGCTAAGTCCCGAAGGCATCTGCACTAGTGACTAA
1 AACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* *
84154121 ATCCGGGCTAAGTTCCGAAGGCATTTGTGCGAGTTACTAA
1 AACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
*
84154161 AACCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTAA
1 AACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
*
84154201 AACTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
1 AACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* * **
84154241 ATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTCT
1 AACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* * * *
84154281 AATCGGGCTATGTCCCGAAGGAATTTGAGCGAGT
1 AACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
84154315 AGTTATATCC
Statistics
Matches: 171, Mismatches: 23, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 171 1.00
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
AACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:84157213 original size:3 final size:3
Alignment explanation
Indices: 84157205--84157241 Score: 51
Period size: 3 Copynumber: 12.7 Consensus size: 3
84157195 TTGTTTTGTT
84157205 TTA TTA TTA TTA TTTA TTA TTA TT- TTA TT- TTA TTA TT
1 TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TT
84157242 TTAGGATTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
2 4 0.13
3 24 0.77
4 3 0.10
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (3 bp):
TTA
Found at i:84157226 original size:16 final size:16
Alignment explanation
Indices: 84157205--84157241 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
84157195 TTGTTTTGTT
84157205 TTATTATTATTA-TTTA
1 TTATTATT-TTATTTTA
84157221 TTATTATTTTATTTTA
1 TTATTATTTTATTTTA
84157237 TTATT
1 TTATT
84157242 TTAGGATTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 3 0.15
16 17 0.85
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (16 bp):
TTATTATTTTATTTTA
Found at i:84157243 original size:13 final size:13
Alignment explanation
Indices: 84157198--84157244 Score: 58
Period size: 13 Copynumber: 3.4 Consensus size: 13
84157188 TTTTGTTTTG
*
84157198 TTTTGTTTTATTA
1 TTTTATTTTATTA
84157211 TTATTATTTATTATTA
1 TT-TTA-TT-TTATTA
84157227 TTTTATTTTATTA
1 TTTTATTTTATTA
84157240 TTTTA
1 TTTTA
84157245 GGATTAAGCT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
13 13 0.43
14 4 0.13
15 5 0.17
16 8 0.27
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.74
Consensus pattern (13 bp):
TTTTATTTTATTA
Found at i:84163596 original size:48 final size:48
Alignment explanation
Indices: 84163540--84163813 Score: 282
Period size: 48 Copynumber: 5.7 Consensus size: 48
84163530 AAGGGTGAAT
* * * *
84163540 TGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATGTCGA
1 TGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAA
* * * *
84163588 GGCCGATGCCATGTCCCAAACATGGTCTTACTCTAACTCTCATCTCAA
1 TGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAA
* ** * *
84163636 TGTCGATGCCATGTCCCTGACATGGTCTTACACTAGCGCACATATCAA
1 TGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAA
* ** * * *
84163684 TGCTGATGCCATACCCCAGACATGGTCTTACACTGGCTCTCAT-TACAT
1 TGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAT-CAA
* * * * *
84163732 TGCTGATGCCATGTTCCAAACATTGTCTTACACTGGCTCTCATATC-G
1 TGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAA
* *
84163779 TGGCCGATGCCATGTCCCAGACATGCTCTTACACT
1 T-GCCGATGCCATGTCCCAAACATGGTCTTACACT
84163814 GACAGACATA
Statistics
Matches: 187, Mismatches: 36, Indels: 6
0.82 0.16 0.03
Matches are distributed among these distances:
47 2 0.01
48 184 0.98
49 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.18, T:0.28
Consensus pattern (48 bp):
TGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAA
Found at i:84163814 original size:96 final size:96
Alignment explanation
Indices: 84163538--84163816 Score: 330
Period size: 96 Copynumber: 2.9 Consensus size: 96
84163528 AAAAGGGTGA
* * *
84163538 ATTGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATGTCGAGGCCGATGCCATGTC
1 ATTGCTGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCGTGGCCGATGCCATGTC
* * *
84163603 CCAAACATGGTCTTACTCTAACTCTCATCTC
66 CCAGACATGGTCTTACACTGACTCTCATCTC
* * ** * * * *
84163634 AATG-TCGATGCCATGTCCCTGACATGGTCTTACACTAGCGCACATATCAAT-GCTGATGCCATA
1 ATTGCT-GATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATC-GTGGCCGATGCCATG
* *
84163697 CCCCAGACATGGTCTTACACTGGCTCTCAT-TAC
64 TCCCAGACATGGTCTTACACTGACTCTCATCT-C
* * *
84163730 ATTGCTGATGCCATGTTCCAAACATTGTCTTACACTGGCTCTCATATCGTGGCCGATGCCATGTC
1 ATTGCTGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCGTGGCCGATGCCATGTC
*
84163795 CCAGACATGCTCTTACACTGAC
66 CCAGACATGGTCTTACACTGAC
84163817 AGACATATCA
Statistics
Matches: 148, Mismatches: 30, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
95 2 0.01
96 145 0.98
97 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (96 bp):
ATTGCTGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCGTGGCCGATGCCATGTC
CCAGACATGGTCTTACACTGACTCTCATCTC
Found at i:84195527 original size:46 final size:46
Alignment explanation
Indices: 84195474--84195583 Score: 143
Period size: 45 Copynumber: 2.4 Consensus size: 46
84195464 CTTTGGTTTT
* * * *
84195474 TCGAGTCTACAACAAATGCATGAGCTTAGAAACC-ATTTTTGTATTC
1 TCGAGTCTACAACATATGCAGGAGC-TAGAAACCTAATCTTGTATTC
* *
84195520 TCGAGTCTGCAACATAT-CAGGAGCTCGAAACCTAATCTTGTATTC
1 TCGAGTCTACAACATATGCAGGAGCTAGAAACCTAATCTTGTATTC
84195565 TCGAGTCTACAACATATGC
1 TCGAGTCTACAACATATGC
84195584 GCAAGCTCAG
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
44 7 0.13
45 32 0.58
46 16 0.29
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (46 bp):
TCGAGTCTACAACATATGCAGGAGCTAGAAACCTAATCTTGTATTC
Found at i:84203425 original size:28 final size:28
Alignment explanation
Indices: 84203400--84203611 Score: 228
Period size: 28 Copynumber: 7.6 Consensus size: 28
84203390 TTTAGCTCCG
*
84203400 CTTTATGCGAGCTCTCTATTTGGCTCTG
1 CTTTATGCGAGCTCTCTATTTGGCTCTA
* * * *
84203428 CTTTGTGTGAGCTCTCTATTTAGATCTA
1 CTTTATGCGAGCTCTCTATTTGGCTCTA
* * **
84203456 CTTTATGCAACCTCTCTATTTATCTCTA
1 CTTTATGCGAGCTCTCTATTTGGCTCTA
* * *
84203484 CTTTATACGAGCTCTCTATTTGGCTTTG
1 CTTTATGCGAGCTCTCTATTTGGCTCTA
* *
84203512 CTTTGTGTGAGCTCTCTATTTGGCTCTA
1 CTTTATGCGAGCTCTCTATTTGGCTCTA
* * * *
84203540 CTTTGTGTGAGCTTTCTATTTGGCTCTG
1 CTTTATGCGAGCTCTCTATTTGGCTCTA
* *
84203568 CTTTATGCGAGTTCTCTTTTTGG-TCTA
1 CTTTATGCGAGCTCTCTATTTGGCTCTA
*
84203595 CTCTATGCGAGCTCTCT
1 CTTTATGCGAGCTCTCT
84203612 GTTTAACTTT
Statistics
Matches: 151, Mismatches: 33, Indels: 1
0.82 0.18 0.01
Matches are distributed among these distances:
27 18 0.12
28 133 0.88
ACGTcount: A:0.13, C:0.23, G:0.18, T:0.46
Consensus pattern (28 bp):
CTTTATGCGAGCTCTCTATTTGGCTCTA
Found at i:84203558 original size:84 final size:84
Alignment explanation
Indices: 84203390--84203616 Score: 258
Period size: 84 Copynumber: 2.7 Consensus size: 84
84203380 AAGTAAATGT
**
84203390 TTTAGCTCCGCTTTATGCGAGCTCTCTATTTGGCTCTGCTTTGTGTGAGCTCTCTATTTAGATCT
1 TTTAGCTCTACTTTATGCGAGCTCTCTATTTGGCTCTGCTTTGTGTGAGCTCTCTATTTAGATCT
84203455 ACTTTATGCAACCTCTCTA
66 ACTTTATGCAACCTCTCTA
* * * * *
84203474 TTTATCTCTACTTTATACGAGCTCTCTATTTGGCTTTGCTTTGTGTGAGCTCTCTATTTGGCTCT
1 TTTAGCTCTACTTTATGCGAGCTCTCTATTTGGCTCTGCTTTGTGTGAGCTCTCTATTTAGATCT
* ** * *
84203539 ACTTTGTGTGAGCTTTCTA
66 ACTTTATGCAACCTCTCTA
* * * * * * * * *
84203558 TTTGGCTCTGCTTTATGCGAGTTCTCTTTTTGG-TCTACTCTATGCGAGCTCTCTGTTTA
1 TTTAGCTCTACTTTATGCGAGCTCTCTATTTGGCTCTGCTTTGTGTGAGCTCTCTATTTA
84203617 ACTTTGCCTT
Statistics
Matches: 118, Mismatches: 25, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
83 19 0.16
84 99 0.84
ACGTcount: A:0.13, C:0.22, G:0.18, T:0.46
Consensus pattern (84 bp):
TTTAGCTCTACTTTATGCGAGCTCTCTATTTGGCTCTGCTTTGTGTGAGCTCTCTATTTAGATCT
ACTTTATGCAACCTCTCTA
Found at i:84204344 original size:16 final size:18
Alignment explanation
Indices: 84204325--84204357 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
84204315 CATACGAATT
84204325 CCAAAAC-ATA-ATAGTA
1 CCAAAACGATAGATAGTA
84204341 CCAAAACGATAGATAGT
1 CCAAAACGATAGATAGT
84204358 GTGACGAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.52, C:0.18, G:0.12, T:0.18
Consensus pattern (18 bp):
CCAAAACGATAGATAGTA
Found at i:84204989 original size:43 final size:43
Alignment explanation
Indices: 84204936--84205040 Score: 192
Period size: 43 Copynumber: 2.4 Consensus size: 43
84204926 GCATTTCCCT
84204936 TGCTAGGCTCGAAGCCCGATATTATTTCACCGGCATTATAGCC
1 TGCTAGGCTCGAAGCCCGATATTATTTCACCGGCATTATAGCC
* *
84204979 TGCTAGGCTCGAGGCCCGATATTATTTTACCGGCATTATAGCC
1 TGCTAGGCTCGAAGCCCGATATTATTTCACCGGCATTATAGCC
84205022 TGCTAGGCTCGAAGCCCGA
1 TGCTAGGCTCGAAGCCCGA
84205041 ATTCATCATA
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.27
Consensus pattern (43 bp):
TGCTAGGCTCGAAGCCCGATATTATTTCACCGGCATTATAGCC
Found at i:84208239 original size:69 final size:69
Alignment explanation
Indices: 84208151--84208300 Score: 300
Period size: 69 Copynumber: 2.2 Consensus size: 69
84208141 TCTAAATTTC
84208151 TCGAAACACATAATCGATTTCTGAACCTCAAACAATCATTACTATCAATCAAAAACTCTGAATTC
1 TCGAAACACATAATCGATTTCTGAACCTCAAACAATCATTACTATCAATCAAAAACTCTGAATTC
84208216 TCTT
66 TCTT
84208220 TCGAAACACATAATCGATTTCTGAACCTCAAACAATCATTACTATCAATCAAAAACTCTGAATTC
1 TCGAAACACATAATCGATTTCTGAACCTCAAACAATCATTACTATCAATCAAAAACTCTGAATTC
84208285 TCTT
66 TCTT
84208289 TCGAAACACATA
1 TCGAAACACATA
84208301 GTGCTCATTT
Statistics
Matches: 81, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
69 81 1.00
ACGTcount: A:0.40, C:0.25, G:0.06, T:0.29
Consensus pattern (69 bp):
TCGAAACACATAATCGATTTCTGAACCTCAAACAATCATTACTATCAATCAAAAACTCTGAATTC
TCTT
Found at i:84211943 original size:16 final size:18
Alignment explanation
Indices: 84211924--84211956 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
84211914 CATACGAATT
84211924 CCAAAAC-ATA-ATAGTA
1 CCAAAACGATAGATAGTA
84211940 CCAAAACGATAGATAGT
1 CCAAAACGATAGATAGT
84211957 GTGACGAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.52, C:0.18, G:0.12, T:0.18
Consensus pattern (18 bp):
CCAAAACGATAGATAGTA
Found at i:84212582 original size:43 final size:43
Alignment explanation
Indices: 84212519--84212638 Score: 197
Period size: 43 Copynumber: 2.8 Consensus size: 43
84212509 TCTAAATTCA
* *
84212519 TTCACCGACATT-TTGCCTGCTAGGCTCGAAGCCCGATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATATTAT
* *
84212561 TTCACCGGCATTATAGCCTGCTAGGCTCGAGGCTCGATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATATTAT
84212604 TTCACCGGCATTATAGCCTGCTAGGCTCGAAGCCC
1 TTCACCGGCATTATAGCCTGCTAGGCTCGAAGCCC
84212639 AAATTCATCA
Statistics
Matches: 71, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
42 11 0.15
43 60 0.85
ACGTcount: A:0.21, C:0.29, G:0.22, T:0.28
Consensus pattern (43 bp):
TTCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATATTAT
Found at i:84215097 original size:46 final size:46
Alignment explanation
Indices: 84215030--84215205 Score: 164
Period size: 46 Copynumber: 3.8 Consensus size: 46
84215020 TATTTGGGCA
* *
84215030 TCCGAACTCGTTTAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
84215076 TCCGAACTCGTTGAGTTGAGTCCAAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
84215121 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCAATTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
84215169 ACCGAGA-TCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGA-ACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
84215206 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 16, Indels: 20
0.74 0.11 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 58 0.56
47 27 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:84217264 original size:13 final size:13
Alignment explanation
Indices: 84217236--84217272 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
84217226 TGACATGATT
*
84217236 TGATGATGTTACTA
1 TGATGATG-GACTA
84217250 TGATGATGGACTA
1 TGATGATGGACTA
84217263 TGATGATGGA
1 TGATGATGGA
84217273 AGTTGTGTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 14 0.64
14 8 0.36
ACGTcount: A:0.30, C:0.05, G:0.30, T:0.35
Consensus pattern (13 bp):
TGATGATGGACTA
Found at i:84218180 original size:15 final size:15
Alignment explanation
Indices: 84218141--84218211 Score: 81
Period size: 15 Copynumber: 4.7 Consensus size: 15
84218131 GTATCTTGGG
*
84218141 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
84218156 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
* *
84218171 TTTCTTTATTCCGGG
1 TTTCTTTATTCTGGA
*
84218186 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
84218201 TTTCTTTATTC
1 TTTCTTTATTC
84218212 GGTTTTCCTG
Statistics
Matches: 45, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
14 2 0.04
15 41 0.91
16 2 0.04
ACGTcount: A:0.11, C:0.20, G:0.13, T:0.56
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:84218210 original size:30 final size:31
Alignment explanation
Indices: 84218132--84218211 Score: 94
Period size: 30 Copynumber: 2.6 Consensus size: 31
84218122 CATAGTATCG
* *
84218132 TATCTTGGGTTTCTTTA-TCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCCTGGATCTCTC
* *
84218162 TAT-TCTGGATTTCTTTATTCC-GGGTTTCTC
1 TATCT-TGGATTTCTTTATTCCTGGATCTCTC
84218192 TATCTTGGATTTCTTTATTC
1 TATCTTGGATTTCTTTATTC
84218212 GGTTTTCCTG
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
29 1 0.02
30 38 0.88
31 4 0.09
ACGTcount: A:0.11, C:0.19, G:0.15, T:0.55
Consensus pattern (31 bp):
TATCTTGGATTTCTTTATTCCTGGATCTCTC
Found at i:84220345 original size:27 final size:27
Alignment explanation
Indices: 84220315--84220492 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 27
84220305 ATATTGAGCC
* * *
84220315 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACACAATCAAAT
* **
84220342 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACACAATCAAAT
* * * *
84220369 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACACAATCA-AAT
** *** *
84220397 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACACAATCAAAT
* * **
84220424 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAAAT
* * * *
84220451 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTACACAATCAAAT
84220478 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
84220493 GTACAATTTA
Statistics
Matches: 123, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 23 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACACAATCAAAT
Found at i:84220408 original size:55 final size:55
Alignment explanation
Indices: 84220315--84220492 Score: 204
Period size: 54 Copynumber: 3.3 Consensus size: 55
84220305 ATATTGAGCC
* * *
84220315 CGCACACTCAGTGCTATACA-A-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAT-CATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
84220369 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * *
84220424 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
84220478 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
84220493 GTACAATTTA
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 56 0.54
55 45 0.43
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:84220454 original size:82 final size:81
Alignment explanation
Indices: 84220336--84220491 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
84220326 TGCTATACAA
* * *
84220336 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGCA
84220401 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
84220418 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCA
84220482 CACTTAGTGC
65 CACTTAGTGC
84220492 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:84228398 original size:27 final size:27
Alignment explanation
Indices: 84228368--84228545 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 27
84228358 ATATTGAGCC
* * *
84228368 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACACAATCAAAT
* **
84228395 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACACAATCAAAT
* * * *
84228422 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACACAATCA-AAT
** *** *
84228450 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACACAATCAAAT
* * **
84228477 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAAAT
* * * *
84228504 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTACACAATCAAAT
84228531 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
84228546 GTACAATTTA
Statistics
Matches: 123, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 23 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACACAATCAAAT
Found at i:84228461 original size:55 final size:55
Alignment explanation
Indices: 84228368--84228545 Score: 204
Period size: 54 Copynumber: 3.3 Consensus size: 55
84228358 ATATTGAGCC
* * *
84228368 CGCACACTCAGTGCTATACA-A-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAT-CATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
84228422 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * *
84228477 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
84228531 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
84228546 GTACAATTTA
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 56 0.54
55 45 0.43
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:84228507 original size:82 final size:81
Alignment explanation
Indices: 84228389--84228544 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
84228379 TGCTATACAA
* * *
84228389 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGCA
84228454 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
84228471 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCA
84228535 CACTTAGTGC
65 CACTTAGTGC
84228545 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:84231966 original size:46 final size:46
Alignment explanation
Indices: 84231913--84232073 Score: 150
Period size: 46 Copynumber: 3.5 Consensus size: 46
84231903 ACTGGAACAT
* *
84231913 TTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGCTGAG
1 TTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAGCTCGTTGAG
* * * *
84231959 TTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCTGAGCTCGTTGAG
1 TTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCCGAGCTCGTTGAG
* * * *
84232006 TTGAGTCCGAATTCACTTATGGATGCGAACGCCCGAGCTCGTTGAC
1 TTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAGCTCGTTGAG
*
84232052 TTGAGTCTGAGTTCACTTATGG
1 TTGAGTCCGAGTTCACTTATGG
84232074 GTGGGTTACA
Statistics
Matches: 90, Mismatches: 16, Indels: 18
0.73 0.13 0.15
Matches are distributed among these distances:
42 2 0.02
43 5 0.06
45 3 0.03
46 46 0.51
47 25 0.28
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAGCTCGTTGAG
Found at i:84235911 original size:250 final size:250
Alignment explanation
Indices: 84235470--84235972 Score: 934
Period size: 250 Copynumber: 2.0 Consensus size: 250
84235460 TCGACTTCGT
*
84235470 TTTTACGTCCTAGACGTCGAGGTAAGTTCATATGAATGTTTATCATATTAATGTTAATTACATTG
1 TTTTACGTCCTAGACGTCGAGGTAAGTTCATATGAATGGTTATCATATTAATGTTAATTACATTG
84235535 ATTGTTATTATGTTATTTATATCAAAAATGGAAAGATATATGAACTTATCAATGCTATGATGAAT
66 ATTGTTATTATGTTATTTATATCAAAAATGGAAAGATATATGAACTTATCAATGCTATGATGAAT
* * *
84235600 TGATAGATAATGAGTCCCGGTTGAACCTTAGGAATTCATTGGATACAAATGACATGTCATTGGGG
131 TGATAGATAATGACTCCCAGTTGAACCTTAGGAATTCATTGGATACAAATGACATGTCATTGGAG
84235665 ATTTTATGTTCCGGGTGTTGGTCTTGAATTTCCTACTAACGGCTAAGGTCCTGCA
196 ATTTTATGTTCCGGGTGTTGGTCTTGAATTTCCTACTAACGGCTAAGGTCCTGCA
84235720 TTTTACGTCCTAGACGTCGAGGTAAGTTCATATGAATGGTTATCATATTAATGTTAATTACATTG
1 TTTTACGTCCTAGACGTCGAGGTAAGTTCATATGAATGGTTATCATATTAATGTTAATTACATTG
**
84235785 ATTGTTATTATGTTATTTATATCTCAAATGGAAAGATATATGAACTTATCAATGCTATGATGAAT
66 ATTGTTATTATGTTATTTATATCAAAAATGGAAAGATATATGAACTTATCAATGCTATGATGAAT
84235850 TGATAGATAATGACTCCCAGTTGAACCTTAGGAATTCATTGGATACAAATGACATGTCATTGGAG
131 TGATAGATAATGACTCCCAGTTGAACCTTAGGAATTCATTGGATACAAATGACATGTCATTGGAG
* *
84235915 ATTTTATGTTTCGGGTGTTGGTCTTGAATTTCCTACTAACGGCTAAGGTCCTGTA
196 ATTTTATGTTCCGGGTGTTGGTCTTGAATTTCCTACTAACGGCTAAGGTCCTGCA
84235970 TTT
1 TTT
84235973 GTTGCGAATA
Statistics
Matches: 245, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
250 245 1.00
ACGTcount: A:0.30, C:0.13, G:0.19, T:0.38
Consensus pattern (250 bp):
TTTTACGTCCTAGACGTCGAGGTAAGTTCATATGAATGGTTATCATATTAATGTTAATTACATTG
ATTGTTATTATGTTATTTATATCAAAAATGGAAAGATATATGAACTTATCAATGCTATGATGAAT
TGATAGATAATGACTCCCAGTTGAACCTTAGGAATTCATTGGATACAAATGACATGTCATTGGAG
ATTTTATGTTCCGGGTGTTGGTCTTGAATTTCCTACTAACGGCTAAGGTCCTGCA
Found at i:84237133 original size:12 final size:12
Alignment explanation
Indices: 84237116--84237143 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
84237106 ATTTACATGT
84237116 CCTAACACACGG
1 CCTAACACACGG
84237128 CCTAACACACGG
1 CCTAACACACGG
84237140 CCTA
1 CCTA
84237144 GCACGCGGGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.32, C:0.43, G:0.14, T:0.11
Consensus pattern (12 bp):
CCTAACACACGG
Found at i:84240836 original size:40 final size:40
Alignment explanation
Indices: 84240806--84240936 Score: 153
Period size: 40 Copynumber: 3.3 Consensus size: 40
84240796 GCTACTCGTT
*
84240806 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGTTATAGTAACTCGCA
*
84240846 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-TTATAGTAACTCGCA
* * * * *
84240886 CAAATGCCTTC-GG-CTTAGCCCAG-AATTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGTTA-TAGTAACTCGCA
84240924 CAAATGCCTTCGG
1 CAAATGCCTTCGG
84240937 ATCTTAGTCC
Statistics
Matches: 81, Mismatches: 6, Indels: 9
0.84 0.06 0.09
Matches are distributed among these distances:
38 30 0.37
39 3 0.04
40 46 0.57
41 2 0.02
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGTTATAGTAACTCGCA
Found at i:84240924 original size:38 final size:39
Alignment explanation
Indices: 84240834--84240942 Score: 157
Period size: 38 Copynumber: 2.8 Consensus size: 39
84240824 AGCCCGGTTA
* *
84240834 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATT
1 TAGTAACTCGCACAAATGCCTTC-GGACTTAACCCAGAAT
*
84240874 TAGTAACTCGCACAAATGCCTTCGG-CTTAGCCCAGAAT
1 TAGTAACTCGCACAAATGCCTTCGGACTTAACCCAGAAT
*
84240912 TAGTATCTCGCACAAATGCCTTCGGATCTTA
1 TAGTAACTCGCACAAATGCCTTCGGA-CTTA
84240943 GTCCGGATAT
Statistics
Matches: 63, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
38 34 0.54
39 2 0.03
40 27 0.43
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.27
Consensus pattern (39 bp):
TAGTAACTCGCACAAATGCCTTCGGACTTAACCCAGAAT
Found at i:84240949 original size:78 final size:80
Alignment explanation
Indices: 84240806--84240985 Score: 199
Period size: 78 Copynumber: 2.3 Consensus size: 80
84240796 GCTACTCGTT
* **
84240806 CAAATGCCTTCGGGACATAGCCC-GGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCAGAAT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* *
84240870 GATTTAGTAAC-TCGCA
64 GATATAGTAACTTAGCA
* **
84240886 CAAATGCCTTC-GG-CTTAGCCCAGAATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAA-GCCTTCGGGACTTAGCCCAGAATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
* *
84240948 GATATGGTCACTTAGCA
64 GATATAGTAACTTAGCA
84240965 CAAAGCCTTCGGGACTTAGCC
1 CAAAGCCTTCGGGACTTAGCC
84240986 GGACATCATT
Statistics
Matches: 85, Mismatches: 10, Indels: 10
0.81 0.10 0.10
Matches are distributed among these distances:
77 3 0.04
78 50 0.59
79 14 0.16
80 18 0.21
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCAGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TATAGTAACTTAGCA
Found at i:84261506 original size:46 final size:47
Alignment explanation
Indices: 84261394--84261517 Score: 144
Period size: 46 Copynumber: 2.6 Consensus size: 47
84261384 GCCATATTGT
*
84261394 GAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGAGAC
1 GAGAGCCAGTGTAAGA-CATGTCTAGGACATGGCATCAGCATTGAGAC
* * * * *
84261442 GAGTGCTAGTGTAAGACATGTCTTGGACAT-GCATCAGCCTTGGGAC
1 GAGAGCCAGTGTAAGACATGTCTAGGACATGGCATCAGCATTGAGAC
* *
84261488 GTA-AGCCAGTATAAGACATGTCTGGGACAT
1 G-AGAGCCAGTGTAAGACATGTCTAGGACAT
84261518 ACATTGGCTA
Statistics
Matches: 65, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
46 37 0.57
47 14 0.22
48 14 0.22
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (47 bp):
GAGAGCCAGTGTAAGACATGTCTAGGACATGGCATCAGCATTGAGAC
Found at i:84265241 original size:37 final size:37
Alignment explanation
Indices: 84265199--84265273 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
84265189 TGATGAGATT
84265199 ATGTATCGACTATAGATAGCTTAATAAGGTGATGGTG
1 ATGTATCGACTATAGATAGCTTAATAAGGTGATGGTG
84265236 ATGTATCGACTATAGATAGCTTAATAAGGTGATGGTG
1 ATGTATCGACTATAGATAGCTTAATAAGGTGATGGTG
84265273 A
1 A
84265274 AGAACAAATA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.33, C:0.08, G:0.27, T:0.32
Consensus pattern (37 bp):
ATGTATCGACTATAGATAGCTTAATAAGGTGATGGTG
Found at i:84269341 original size:49 final size:46
Alignment explanation
Indices: 84269033--84269343 Score: 165
Period size: 46 Copynumber: 6.7 Consensus size: 46
84269023 TGTGTGAGCT
* * ** *
84269033 AGTG-AAGACATGTCTGGGACAT-ACATCGACCACATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCG-CCTCAAGATGATAGCC
* ** * ** * *
84269078 AGTGTAAGACCATGTATGAAACATGGCATCGACATTGAGACGAGT-GCT
1 AGTGTAAGA-CATGTCTGGGACATGGCATCG-CCTCAAGATGA-TAGCC
* * * ** *
84269126 AGTGTAAGGCATGTCTAGGACAT-GCATCATCCTCGGGA-CATAAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATC-GCCTCAAGATGAT-AGCC
* * *
84269172 AGTATAAGACATGTCTGGGACAT-GCATCGGCTACAAGATG-T-GTC
1 AGTGTAAGACATGTCTGGGACATGGCATCGCCT-CAAGATGATAGCC
* * * * *
84269216 TGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-AGTTATGTGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGCCTCAAG--A--TGATAGCC
84269266 AGTGTAAGAC-TGTCTGGGACATGGCATCAGCCTCGAAGATGATAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATC-GCCTC-AAGATGATAGCC
*
84269313 AGTGTAAGACCATGTCTGGGATATGGCATCG
1 AGTGTAAGA-CATGTCTGGGACATGGCATCG
84269344 GCACTTTACC
Statistics
Matches: 199, Mismatches: 45, Indels: 41
0.70 0.16 0.14
Matches are distributed among these distances:
44 12 0.06
45 22 0.11
46 54 0.27
47 36 0.18
48 42 0.21
49 22 0.11
50 9 0.05
51 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGGCATCGCCTCAAGATGATAGCC
Found at i:84271866 original size:47 final size:47
Alignment explanation
Indices: 84271807--84271928 Score: 201
Period size: 47 Copynumber: 2.6 Consensus size: 47
84271797 GCATTGGCAC
*
84271807 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
84271854 TAAGACAAGGATACCATAG-AAGACCATGTTTGGAACATGACATTTGG
1 TAAGACAAGGATACCAT-GTAAGACCATGTTTGGAACATGACATTTGG
* *
84271901 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
84271929 CCAAGGCATG
Statistics
Matches: 70, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
46 1 0.01
47 68 0.97
48 1 0.01
ACGTcount: A:0.38, C:0.14, G:0.24, T:0.25
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
Found at i:84272036 original size:55 final size:54
Alignment explanation
Indices: 84271907--84272211 Score: 345
Period size: 55 Copynumber: 5.6 Consensus size: 54
84271897 TTGGTAAGAT
* * *
84271907 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAATGC-
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAA-GCA
* * * *
84271961 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTAATGAGTTACTATAACGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAA-GCA
* * *
84272017 AAGG-TCCCATGTAAGACCATGCCAATG-CATGACATTGGTGAGTT-TATAAAGC-
1 AAGGATACCATGTAAGACCATGCCAA-GACATGGCATTGATGAGTTCTAT-AAGCA
*
84272069 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAA-GCA
* * * * *
84272125 AAGG-TCCCATGTAAGACCATGCCAAGGCAAGGCATTGGTGAGTTC-ATAAGGA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGCA
*
84272177 AAGGATACCATGTAAGACCATGTCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCA
84272212 ATGGTAAGTT
Statistics
Matches: 213, Mismatches: 27, Indels: 23
0.81 0.10 0.09
Matches are distributed among these distances:
52 11 0.05
53 69 0.32
54 45 0.21
55 79 0.37
56 9 0.04
ACGTcount: A:0.36, C:0.18, G:0.23, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGCA
Found at i:84272222 original size:108 final size:108
Alignment explanation
Indices: 84271915--84272211 Score: 468
Period size: 108 Copynumber: 2.7 Consensus size: 108
84271905 ATAAGGATAT
* * * * *
84271915 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAATGCAAGGAAATCATGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAAGCAAGGATACCATGTAAGACC
*
84271980 ATGTCAAGACATGGCATTAATGAGTTACTATAACGCAAAGGTCC
65 ATGTCAAGACATGGCATTGATGAGTTACTATAACGCAAAGGTCC
* * *
84272024 CATGTAAGACCATGCCAATGCATGACATTGGTGAGTTTATAAAGCAAGGATACCATGTAAGACCA
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAAGCAAGGATACCATGTAAGACCA
*
84272089 TGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
66 TGTCAAGACATGGCATTGATGAGTTACTATAACGCAAAGGTCC
* * *
84272132 CATGTAAGACCATGCCAAGGCAAGGCATTGGTGAGTTCATAAGGAAAGGATACCATGTAAGACCA
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAAGCAAGGATACCATGTAAGACCA
84272197 TGTCAAGACATGGCA
66 TGTCAAGACATGGCA
84272212 ATGGTAAGTT
Statistics
Matches: 172, Mismatches: 16, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
108 139 0.81
109 33 0.19
ACGTcount: A:0.36, C:0.18, G:0.23, T:0.23
Consensus pattern (108 bp):
CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAAGCAAGGATACCATGTAAGACCA
TGTCAAGACATGGCATTGATGAGTTACTATAACGCAAAGGTCC
Found at i:84272233 original size:53 final size:53
Alignment explanation
Indices: 84271907--84272226 Score: 261
Period size: 53 Copynumber: 5.9 Consensus size: 53
84271897 TTGGTAAGAT
* * * * * * *
84271907 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAATGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-AAAAAGGA
* * * * * *
84271961 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTAATGAGTTACTATAACGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTA--A-AAAGGA
* * * * *
84272017 AAGG-TCCCATGTAAGACCATGCCAATG-CATGACATTGGTGAGTTTATAAA-GC
1 AAGGATACCATGTAAGACCATGCCAA-GACATGGCATTGATGAG-TTAAAAAGGA
* *
84272069 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTA--AAAAGG-A
* * * * * *
84272125 AAGG-TCCCATGTAAGACCATGCCAAGGCAAGGCATTGGTGAGTTCATAAGGA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTAAAAAGGA
* * * *
84272177 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTAAAAA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTAAAAA
84272227 AAAAAGGGTT
Statistics
Matches: 211, Mismatches: 43, Indels: 25
0.76 0.15 0.09
Matches are distributed among these distances:
52 13 0.06
53 77 0.36
54 42 0.20
55 66 0.31
56 13 0.06
ACGTcount: A:0.37, C:0.17, G:0.23, T:0.23
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTAAAAAGGA
Found at i:84277914 original size:38 final size:39
Alignment explanation
Indices: 84277836--84277916 Score: 103
Period size: 38 Copynumber: 2.1 Consensus size: 39
84277826 TGGTCCTGAA
* * *
84277836 TTGTTATGTATGTATGAAATGAATGTCTTTGGATTATGT
1 TTGTGATGTATGTATGAAATGAATGTATTAGGATTATGT
*
84277875 TTGTGATG-ATGTATGAAATGAATGTATTAAGG-TTTTGT
1 TTGTGATGTATGTATGAAATGAATGTATT-AGGATTATGT
84277913 TTGT
1 TTGT
84277917 AGGGTAATGC
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
38 28 0.76
39 9 0.24
ACGTcount: A:0.26, C:0.01, G:0.25, T:0.48
Consensus pattern (39 bp):
TTGTGATGTATGTATGAAATGAATGTATTAGGATTATGT
Found at i:84281575 original size:79 final size:81
Alignment explanation
Indices: 84281439--84281621 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
84281429 TCGAATGATG
* *
84281439 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
84281503 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
84281518 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
84281580 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
84281598 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
84281622 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:84281637 original size:40 final size:40
Alignment explanation
Indices: 84281440--84281623 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
84281430 CGAATGATGT
* * * *
84281440 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
84281480 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
84281520 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
84281558 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
84281599 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
84281624 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 34 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:84281645 original size:79 final size:79
Alignment explanation
Indices: 84281492--84281656 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
84281482 GGACTAAGAT
* **
84281492 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
84281557 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
84281571 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
84281634 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
84281650 CCGAAGG
1 CCGAAGG
84281657 TACGTGATTC
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:84289705 original size:40 final size:41
Alignment explanation
Indices: 84289621--84289805 Score: 174
Period size: 40 Copynumber: 4.7 Consensus size: 41
84289611 TCGAATGATG
* * *
84289621 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGATCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
84289660 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAGATCCCGAAGGCATTTGTGCGAGTTACTAAT
*
84289701 TCCGGGCT-A-ATCCCGAAGGCATTGGTGCGAGTTACTAAAT
1 TCCGGGCTAAGATCCCGAAGGCATTTGTGCGAGTTACT-AAT
* *
84289741 T-CGGGTTAAG-TCCCGAAGGCATTTGTGTGAGTTACT-AT
1 TCCGGGCTAAGATCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
84289779 AACCGGGCTATG-TCCCGAAGGCATTTG
1 -TCCGGGCTAAGATCCCGAAGGCATTTG
84289806 AATGAGTAGC
Statistics
Matches: 122, Mismatches: 14, Indels: 18
0.79 0.09 0.12
Matches are distributed among these distances:
38 4 0.03
39 28 0.23
40 80 0.66
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (41 bp):
TCCGGGCTAAGATCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:84296151 original size:17 final size:18
Alignment explanation
Indices: 84296129--84296162 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
84296119 TGATTTAGGT
*
84296129 AAAGTG-ATGTATGAAGG
1 AAAGTGCATATATGAAGG
84296146 AAAGTGCATATATGAAG
1 AAAGTGCATATATGAAG
84296163 TTAACTAGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.44, C:0.03, G:0.29, T:0.24
Consensus pattern (18 bp):
AAAGTGCATATATGAAGG
Found at i:84304050 original size:26 final size:26
Alignment explanation
Indices: 84304021--84304186 Score: 81
Period size: 27 Copynumber: 6.2 Consensus size: 26
84304011 ATTACAATTT
**
84304021 TACCCTCGATTGAGAAATTACTGAAA
1 TACCCTCGATTGAGAAATTACCAAAA
* * *
84304047 TA-CCTCTATAGGGTAGAATTACCAAAA
1 TACCCTCGATTGAG-A-AATTACCAAAA
* *
84304074 TAACCCTAG-TTGTA-AAATTACTAAAA
1 T-ACCCTCGATTG-AGAAATTACCAAAA
* * * *
84304100 TACCACTGGTTTGTGAAATTACCGAAA
1 TACC-CTCGATTGAGAAATTACCAAAA
*
84304127 TACCCTCAATTTGTA-AAATTACCAAAA
1 TACCCTCGA-TTG-AGAAATTACCAAAA
* * *
84304154 TACCC-CTGATTTACAAAATTACAAAAA
1 TACCCTC-GATTGA-GAAATTACCAAAA
84304181 TACCCT
1 TACCCT
84304187 TGACTTTCTA
Statistics
Matches: 104, Mismatches: 22, Indels: 26
0.68 0.14 0.17
Matches are distributed among these distances:
25 12 0.12
26 22 0.21
27 64 0.62
28 3 0.03
29 3 0.03
ACGTcount: A:0.41, C:0.20, G:0.10, T:0.28
Consensus pattern (26 bp):
TACCCTCGATTGAGAAATTACCAAAA
Found at i:84304118 original size:80 final size:81
Alignment explanation
Indices: 84304034--84304184 Score: 189
Period size: 80 Copynumber: 1.9 Consensus size: 81
84304024 CCTCGATTGA
* * * ** *
84304034 GAAATTACTGAAATA-CCTCTATAGGGTAGAATTACCAAAATAACCCT-AGTTGTAAAATTACTA
1 GAAATTACCGAAATACCCTCAAT-GGGTAAAATTACCAAAATAACCCTGAGTTACAAAATTACAA
84304097 AAATACCACTGGTTTGT
65 AAATACCACTGGTTTGT
** * *
84304114 GAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACAAA
1 GAAATTACCGAAATACCCTCAATGGGTAAAATTACCAAAATAACCCTGAGTTACAAAATTACAAA
84304179 AATACC
66 AATACC
84304185 CTTGACTTTC
Statistics
Matches: 59, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
80 34 0.58
81 25 0.42
ACGTcount: A:0.43, C:0.19, G:0.10, T:0.28
Consensus pattern (81 bp):
GAAATTACCGAAATACCCTCAATGGGTAAAATTACCAAAATAACCCTGAGTTACAAAATTACAAA
AATACCACTGGTTTGT
Found at i:84304120 original size:27 final size:26
Alignment explanation
Indices: 84304063--84304186 Score: 124
Period size: 27 Copynumber: 4.7 Consensus size: 26
84304053 TATAGGGTAG
*
84304063 AATTACCAAAATAACCCT-AGTTGTAA
1 AATTACCAAAAT-ACCCTGATTTGTAA
* * *
84304089 AATTACTAAAATACCACTGGTTTGTGA
1 AATTACCAAAATACC-CTGATTTGTAA
* *
84304116 AATTACCGAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCCT-GATTTGTAA
**
84304143 AATTACCAAAATACCCCTGATTTACAA
1 AATTACCAAAATA-CCCTGATTTGTAA
*
84304170 AATTACAAAAATACCCT
1 AATTACCAAAATACCCT
84304187 TGACTTTCTA
Statistics
Matches: 80, Mismatches: 14, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
25 3 0.04
26 19 0.24
27 54 0.68
28 4 0.05
ACGTcount: A:0.44, C:0.21, G:0.07, T:0.28
Consensus pattern (26 bp):
AATTACCAAAATACCCTGATTTGTAA
Found at i:84304236 original size:27 final size:27
Alignment explanation
Indices: 84304197--84304248 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
84304187 TGACTTTCTA
84304197 AAAATTATAGAAATAACATTGGTTTAC
1 AAAATTATAGAAATAACATTGGTTTAC
* *
84304224 AAAATTACT-GAAATACCCTTGGTTT
1 AAAATTA-TAGAAATAACATTGGTTT
84304249 GTAGATTTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 21 0.95
28 1 0.05
ACGTcount: A:0.42, C:0.12, G:0.12, T:0.35
Consensus pattern (27 bp):
AAAATTATAGAAATAACATTGGTTTAC
Found at i:84304333 original size:27 final size:27
Alignment explanation
Indices: 84304303--84304362 Score: 70
Period size: 27 Copynumber: 2.2 Consensus size: 27
84304293 CCTATAATAA
84304303 GTAAAAAGA-CTGTAA-AGCCCCTGTATG
1 GTAAAAAGACCT-TAATA-CCCCTGTATG
**
84304330 GTAAAGTGACCTTAATACCCCTGTATG
1 GTAAAAAGACCTTAATACCCCTGTATG
84304357 GTAAAA
1 GTAAAA
84304363 TGTCGAATAT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
27 25 0.89
28 3 0.11
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.25
Consensus pattern (27 bp):
GTAAAAAGACCTTAATACCCCTGTATG
Found at i:84305207 original size:25 final size:25
Alignment explanation
Indices: 84305173--84305267 Score: 163
Period size: 25 Copynumber: 3.8 Consensus size: 25
84305163 AGGAAGTGCT
84305173 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
84305198 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
* * *
84305223 AAAAGGGCTTTGCCCCAATTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCG
84305248 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
84305268 ATTAAAAGAG
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 66 1.00
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:84305280 original size:24 final size:23
Alignment explanation
Indices: 84305173--84305294 Score: 109
Period size: 25 Copynumber: 5.0 Consensus size: 23
84305163 AGGAAGTGCT
*
84305173 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAG-TTA-TG
*
84305198 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAG-TTA-TG
* *
84305223 AAAAGGGCTTTGCCCCAATTTATCA
1 AAAAGGGCTTTGCCCC-AGTTAT-G
*
84305248 AAAAGGGCTTTGCCCCAGTTATT
1 AAAAGGGCTTTGCCCCAGTTATG
**
84305271 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAG-GGCTTTGCC-CCAGTTAT
84305295 ATGATAAAGC
Statistics
Matches: 86, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
23 5 0.06
24 12 0.14
25 68 0.79
26 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25
Consensus pattern (23 bp):
AAAAGGGCTTTGCCCCAGTTATG
Found at i:84305474 original size:42 final size:42
Alignment explanation
Indices: 84305415--84305506 Score: 175
Period size: 42 Copynumber: 2.2 Consensus size: 42
84305405 TAGTCTCCCC
*
84305415 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
84305457 AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
84305499 AAATGGGC
1 AAATGGGC
84305507 CTATGGGCCA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.28, C:0.12, G:0.22, T:0.38
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
Found at i:84308159 original size:56 final size:55
Alignment explanation
Indices: 84308091--84308217 Score: 141
Period size: 56 Copynumber: 2.3 Consensus size: 55
84308081 TACATGTAAT
*
84308091 CACATATTGATGCCACTGT-CCAAGACAG-GGTCTTACTCGCACACATATATCAGAAC
1 CACATATCGATGCCAC-GTACCAAG-C-GTGGTCTTACTCGCACACATATATCAGAAC
** * **
84308147 CACATATCGATGCCAACGTATTAAGCGTGGTCTTACTCGCATACATATATCAGAGT
1 CACATATCGATGCC-ACGTACCAAGCGTGGTCTTACTCGCACACATATATCAGAAC
*
84308203 CACATATCAATGCCA
1 CACATATCGATGCCA
84308218 TGGTCTTACT
Statistics
Matches: 61, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
55 2 0.03
56 54 0.89
57 5 0.08
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (55 bp):
CACATATCGATGCCACGTACCAAGCGTGGTCTTACTCGCACACATATATCAGAAC
Found at i:84312143 original size:23 final size:23
Alignment explanation
Indices: 84312090--84312160 Score: 119
Period size: 23 Copynumber: 3.1 Consensus size: 23
84312080 AGCTCACTAT
84312090 TTTCAGCTCG-TATGAGCTTATTG
1 TTTCAGCTCGATA-GAGCTTATTG
84312113 -TTCAGCTCGATAGAGCTTATTG
1 TTTCAGCTCGATAGAGCTTATTG
84312135 TTTCAGCTCGATAGAGCTTATTG
1 TTTCAGCTCGATAGAGCTTATTG
84312158 TTT
1 TTT
84312161 AGCAGCTCAG
Statistics
Matches: 46, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
22 19 0.41
23 27 0.59
ACGTcount: A:0.20, C:0.17, G:0.21, T:0.42
Consensus pattern (23 bp):
TTTCAGCTCGATAGAGCTTATTG
Found at i:84312700 original size:14 final size:14
Alignment explanation
Indices: 84312681--84312710 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
84312671 TAAAGAATGA
84312681 TAGTTATATTACTT
1 TAGTTATATTACTT
84312695 TAGTTATATTACTT
1 TAGTTATATTACTT
84312709 TA
1 TA
84312711 TATCATGATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.30, C:0.07, G:0.07, T:0.57
Consensus pattern (14 bp):
TAGTTATATTACTT
Found at i:84320636 original size:45 final size:45
Alignment explanation
Indices: 84320586--84320672 Score: 129
Period size: 45 Copynumber: 1.9 Consensus size: 45
84320576 CCAAAACAGG
* * *
84320586 TGTCACATATATCACGAACTCAGACCATAACTCAATGAGTTCGGA
1 TGTCACATATATCACGAAATCAAACCACAACTCAATGAGTTCGGA
* *
84320631 TGTCACATATATCATGAAATCAAACCACAACTGAATGAGTTC
1 TGTCACATATATCACGAAATCAAACCACAACTCAATGAGTTC
84320673 AGATTACAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.38, C:0.23, G:0.14, T:0.25
Consensus pattern (45 bp):
TGTCACATATATCACGAAATCAAACCACAACTCAATGAGTTCGGA
Found at i:84323661 original size:68 final size:67
Alignment explanation
Indices: 84323589--84323738 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
84323579 CATCATGTGT
* * * *
84323589 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
84323651 ATGTAG
62 ATGTAG
** * *
84323657 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
84323722 AG
66 AG
84323724 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
84323739 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:84323694 original size:64 final size:64
Alignment explanation
Indices: 84323613--84323796 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
84323603 AGACATTATG
* *
84323613 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
84323677 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
84323742 AA
63 AA
* * * *
84323744 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
84323797 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:84334044 original size:46 final size:44
Alignment explanation
Indices: 84333977--84334146 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 44
84333967 AACCCGCCCC
*
84333977 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGC-TT-GCATCCA
* * *
84334023 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG-TTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-CTTGCATCCA
* * *
84334069 TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTGCATCCA
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGC-TTGCATCCA
84334114 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
84334147 ATGCTCAACC
Statistics
Matches: 105, Mismatches: 12, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 31 0.30
46 63 0.60
47 3 0.03
48 2 0.02
49 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.22
Consensus pattern (44 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCTTGCATCCA
Found at i:84334138 original size:91 final size:92
Alignment explanation
Indices: 84333982--84334150 Score: 304
Period size: 91 Copynumber: 1.8 Consensus size: 92
84333972 GCCCCTAAGT
* *
84333982 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
84334047 CGAGTTCGGATGCCTAGTTACATTCAC
66 CGAGTTCGGATGCCTAGTTACATTCAC
*
84334074 GAACTCGGACTCAACTCAACGAGTTCGGACATT-GCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
84334138 CGAGTTCGGATGC
66 CGAGTTCGGATGC
84334151 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
91 44 0.59
92 30 0.41
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTCAC
Found at i:84334592 original size:30 final size:30
Alignment explanation
Indices: 84334558--84334617 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
84334548 ATTTAATACG
84334558 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
84334588 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
84334618 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:84341649 original size:93 final size:93
Alignment explanation
Indices: 84341541--84341711 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
84341531 GACCCTAAGT
* *
84341541 GAACTCGGACTCAACTCAACGAGCTC-GAGCGTTCGCATCCATAAGTGAACTCAAACTCAACTCA
1 GAACTCAGACTCAACTCAACGAGCTCGGA-CATTCGCATCCATAAGTGAACTCAAACTCAACTCA
*
84341605 ATGAGTTCGGATGCATAGTTACATTTCAC
65 ACGAGTTCGGATGCATAGTTACATTTCAC
* * **
84341634 GAACTCAGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAAACTCAACTCAA
84341699 CGAGTTCGGATGC
66 CGAGTTCGGATGC
84341712 TTAACCATCC
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
93 68 0.97
94 2 0.03
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAAACTCAACTCAA
CGAGTTCGGATGCATAGTTACATTTCAC
Found at i:84341699 original size:46 final size:47
Alignment explanation
Indices: 84341536--84341708 Score: 185
Period size: 46 Copynumber: 3.7 Consensus size: 47
84341526 AACCCGACCC
* * * *
84341536 TAAGTGAACTCGGACTCAACTCAACGAGCTC-GAGCGTTCGCATCCA
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGAGCATTTGCATCCA
* * * *
84341582 TAAGTGAACTCAAACTCAACTCAATGAGTTCGGATGCATAGTTACAT--T
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGA-GCAT--TTGCATCCA
* *
84341630 TCA-CGAACTCAGACTCAACTCAACGAGTTCGGA-CATTTGCATCCA
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGAGCATTTGCATCCA
*
84341675 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
84341709 TGCTTAACCA
Statistics
Matches: 103, Mismatches: 17, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
43 5 0.05
45 5 0.05
46 55 0.53
47 29 0.28
48 5 0.05
50 4 0.04
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.23
Consensus pattern (47 bp):
TAAGTGAACTCAGACTCAACTCAACGAGTTCGGAGCATTTGCATCCA
Found at i:84342169 original size:30 final size:30
Alignment explanation
Indices: 84342135--84342194 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
84342125 ATTTAATACG
84342135 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
84342165 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
84342195 GGCTCAGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:84348425 original size:20 final size:20
Alignment explanation
Indices: 84348400--84348446 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
84348390 GATTTGATAT
84348400 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGATATGC
84348420 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
84348440 ACATGAT
1 ACATGAT
84348447 GTATTCATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 24 0.92
21 2 0.08
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:84348560 original size:25 final size:25
Alignment explanation
Indices: 84348532--84348600 Score: 88
Period size: 25 Copynumber: 2.8 Consensus size: 25
84348522 ATGGCCTTTG
84348532 CCCAGTTTATTAAAAGGGCTTTTTC
1 CCCAGTTTATTAAAAGGGCTTTTTC
* **
84348557 CCCAGTTTATCAAAA-GATTTTTTC
1 CCCAGTTTATTAAAAGGGCTTTTTC
84348581 CCCAG-TTATTAAAAGAGGCT
1 CCCAGTTTATTAAAAG-GGCT
84348601 AGGCCTCCAA
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
23 8 0.22
24 12 0.33
25 16 0.44
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.36
Consensus pattern (25 bp):
CCCAGTTTATTAAAAGGGCTTTTTC
Found at i:84348843 original size:31 final size:31
Alignment explanation
Indices: 84348808--84348897 Score: 101
Period size: 38 Copynumber: 2.7 Consensus size: 31
84348798 CGTTTACAGT
84348808 AAAGGCTTCGGCCCAGTCATATA-AAATATGA
1 AAAGGCTTCGGCCCAGT-ATATAGAAATATGA
84348839 AAAGGCTTCGGCCCAGTGTTATGAAATATGAAATATGA
1 AAAGGCTTCGGCCCA--G-TAT---ATA-GAAATATGA
84348877 AAAGGCTTCGGCCCAGTATAT
1 AAAGGCTTCGGCCCAGTATAT
84348898 GCTGAGATGG
Statistics
Matches: 51, Mismatches: 0, Indels: 15
0.77 0.00 0.23
Matches are distributed among these distances:
31 15 0.29
32 2 0.04
33 3 0.06
34 1 0.02
35 3 0.06
36 4 0.08
38 23 0.45
ACGTcount: A:0.36, C:0.18, G:0.22, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTATATAGAAATATGA
Found at i:84356712 original size:24 final size:25
Alignment explanation
Indices: 84356623--84356713 Score: 116
Period size: 25 Copynumber: 3.7 Consensus size: 25
84356613 AGGAAATGCA
* * *
84356623 AAAAGGGC-TATGCCCTAGTTTACC
1 AAAAGGGCTTTTGCCCCAGTTTATC
*
84356647 GAAAAGGGCTTTTG-CCCAGTTTATT
1 -AAAAGGGCTTTTGCCCCAGTTTATC
84356672 AAAAGGGCTTTTGCCCCAGTTTATC
1 AAAAGGGCTTTTGCCCCAGTTTATC
84356697 AAAAGGG-TTTTGCCCCA
1 AAAAGGGCTTTTGCCCCA
84356714 ATTATTGAAA
Statistics
Matches: 59, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
24 23 0.39
25 33 0.56
26 3 0.05
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (25 bp):
AAAAGGGCTTTTGCCCCAGTTTATC
Found at i:84356973 original size:31 final size:31
Alignment explanation
Indices: 84356938--84357001 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
84356928 CGTTTACAGT
84356938 AAAGGCTTCGGCCCAGTCATATGAAATATGA
1 AAAGGCTTCGGCCCAGTCATATGAAATATGA
**
84356969 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTCATATGAAATATGA
84357000 AA
1 AA
84357002 TATGAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTCATATGAAATATGA
Found at i:84360778 original size:23 final size:23
Alignment explanation
Indices: 84360728--84360837 Score: 125
Period size: 23 Copynumber: 4.8 Consensus size: 23
84360718 CCGATATATC
* *
84360728 AGCTCGAGAGAGCTTACTGGTTTC
1 AGCTCGATAGAGCTTACT-GTTTA
*
84360752 AGCTTGATAGAGCTTACTGTTTA
1 AGCTCGATAGAGCTTACTGTTTA
* *
84360775 AGCTCG-TATGAGCTTATTGTTCA
1 AGCTCGATA-GAGCTTACTGTTTA
*
84360798 A-CTCGATAGAGCTTACTGTTTT
1 AGCTCGATAGAGCTTACTGTTTA
*
84360820 AGCTCAATAGAGCTTACT
1 AGCTCGATAGAGCTTACT
84360838 ATTCAGTAGC
Statistics
Matches: 73, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
22 18 0.25
23 39 0.53
24 16 0.22
ACGTcount: A:0.25, C:0.18, G:0.22, T:0.35
Consensus pattern (23 bp):
AGCTCGATAGAGCTTACTGTTTA
Found at i:84365364 original size:21 final size:22
Alignment explanation
Indices: 84365339--84365381 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
84365329 TTTTCACTCT
* *
84365339 CCTTTGCTTTT-CATTTTTTCC
1 CCTTTCCTTTTCCAATTTTTCC
84365360 CCTTTCCTTTTCCAATTTTTCC
1 CCTTTCCTTTTCCAATTTTTCC
84365382 TTTTGAGAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.07, C:0.33, G:0.02, T:0.58
Consensus pattern (22 bp):
CCTTTCCTTTTCCAATTTTTCC
Found at i:84369393 original size:40 final size:40
Alignment explanation
Indices: 84369336--84369449 Score: 167
Period size: 39 Copynumber: 2.9 Consensus size: 40
84369326 GCACACTAAT
*
84369336 CCGAAGCTATCTCAAATCACACACTAAGTGCCGTACATAG
1 CCGAAGCTATCTCAAATCACACACTAAGTGCCATACATAG
* *
84369376 CCGAAGCTATCTTAAATCACACACT-AGTGCCATATATAG
1 CCGAAGCTATCTCAAATCACACACTAAGTGCCATACATAG
* * *
84369415 CTGAAGCTATCTCGAATCGCACACTAAGTGCCATA
1 CCGAAGCTATCTCAAATCACACACTAAGTGCCATA
84369450 TATAACTGAA
Statistics
Matches: 66, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
39 33 0.50
40 33 0.50
ACGTcount: A:0.34, C:0.28, G:0.15, T:0.23
Consensus pattern (40 bp):
CCGAAGCTATCTCAAATCACACACTAAGTGCCATACATAG
Found at i:84369459 original size:40 final size:40
Alignment explanation
Indices: 84369338--84369459 Score: 174
Period size: 40 Copynumber: 3.1 Consensus size: 40
84369328 ACACTAATCC
* * *
84369338 GAAGCTATCTCAAATCACACACTAAGTGCCGTACATAGCC
1 GAAGCTATCTCAAATCACACACTAAGTGCCATATATAGCT
*
84369378 GAAGCTATCTTAAATCACACACT-AGTGCCATATATAGCT
1 GAAGCTATCTCAAATCACACACTAAGTGCCATATATAGCT
* * *
84369417 GAAGCTATCTCGAATCGCACACTAAGTGCCATATATAACT
1 GAAGCTATCTCAAATCACACACTAAGTGCCATATATAGCT
84369457 GAA
1 GAA
84369460 TTGTCATCAA
Statistics
Matches: 73, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
39 33 0.45
40 40 0.55
ACGTcount: A:0.36, C:0.25, G:0.15, T:0.24
Consensus pattern (40 bp):
GAAGCTATCTCAAATCACACACTAAGTGCCATATATAGCT
Found at i:84379363 original size:67 final size:68
Alignment explanation
Indices: 84379289--84379439 Score: 177
Period size: 67 Copynumber: 2.2 Consensus size: 68
84379279 CATCATGTGT
* * *
84379289 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACA-TG-TGTACACCA
1 ACAAGAGAGCTACAAGACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAGTGAAGGACACCA
84379351 TGTAG
64 TGTAG
** * *
84379356 ACAAGAGAGCTAC--GGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCAT
1 ACAAGAGAGCTACAAGACATATATGTAGCTAGGTCGCATGCGTGGATACA-GTGAAGGACACCAT
84379419 GTAG
65 GTAG
84379423 ACAAGAGAGCTACAAGA
1 ACAAGAGAGCTACAAGA
84379440 TAAATTGGCT
Statistics
Matches: 70, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
63 20 0.29
64 7 0.10
65 2 0.03
66 2 0.03
67 38 0.54
69 1 0.01
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (68 bp):
ACAAGAGAGCTACAAGACATATATGTAGCTAGGTCGCATGCGTGGATACAGTGAAGGACACCATG
TAG
Found at i:84382515 original size:43 final size:43
Alignment explanation
Indices: 84382371--84382537 Score: 137
Period size: 43 Copynumber: 3.9 Consensus size: 43
84382361 GGTTACCGAG
* *
84382371 ATGTGATTACATGTAACACCATGTCTGGGACATTA-GCATTG-T
1 ATGTGATTACATGTAAGACCATGTCTGGGACA-TAGGCATCGAT
* * * * *
84382413 ATTGTAATTACGTGTAAGACCATGTCTAGGACATTGGAATC-ATT
1 A-TGTGATTACATGTAAGACCATGTCTGGGACATAGGCATCGA-T
* * * *
84382457 ATTTGATTTCGTGTAAGACCCTGTCTGGGACATAGGCATCGAT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATAGGCATCGAT
* * *
84382500 ATGTGATAACATGTAAGGA-CATATCTGGGATAT-GGCAT
1 ATGTGATTACATGTAA-GACCATGTCTGGGACATAGGCAT
84382538 TGTACGAGCT
Statistics
Matches: 98, Mismatches: 21, Indels: 12
0.75 0.16 0.09
Matches are distributed among these distances:
42 7 0.07
43 86 0.88
44 5 0.05
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.32
Consensus pattern (43 bp):
ATGTGATTACATGTAAGACCATGTCTGGGACATAGGCATCGAT
Found at i:84387218 original size:16 final size:15
Alignment explanation
Indices: 84387180--84387218 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
84387170 CTAGGCTTGC
84387180 GTGAAATTAATTTTT
1 GTGAAATTAATTTTT
*
84387195 GTGTAAATTGTATTTTT
1 GTG-AAATT-AATTTTT
84387212 GTGAAAT
1 GTGAAAT
84387219 ACGGACTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
15 3 0.14
16 9 0.43
17 9 0.43
ACGTcount: A:0.31, C:0.00, G:0.18, T:0.51
Consensus pattern (15 bp):
GTGAAATTAATTTTT
Found at i:84387622 original size:40 final size:39
Alignment explanation
Indices: 84387536--84387628 Score: 100
Period size: 40 Copynumber: 2.3 Consensus size: 39
84387526 TGATTATGTT
84387536 TGGCACTTAGTGTGCGTTTCAAAATAGCTTCGGCTATAAA
1 TGGCACTTAGTGTGCGTTT-AAAATAGCTTCGGCTATAAA
* * *
84387576 TAGCACTTAGTGTGCGAATTT-GAATAGCTTTGGCTATATAA
1 TGGCACTTAGTGTGCG--TTTAAAATAGCTTCGGCTATA-AA
*
84387617 -GGCACTAAGTGT
1 TGGCACTTAGTGT
84387629 ACGATACTGA
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
40 40 0.89
41 2 0.04
42 3 0.07
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.33
Consensus pattern (39 bp):
TGGCACTTAGTGTGCGTTTAAAATAGCTTCGGCTATAAA
Found at i:84391663 original size:79 final size:81
Alignment explanation
Indices: 84391527--84391711 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
84391517 TTGAATGATG
* *
84391527 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
84391591 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
84391606 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
84391668 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
84391686 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
84391712 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:84391725 original size:40 final size:40
Alignment explanation
Indices: 84391528--84391711 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
84391518 TGAATGATGT
* * * *
84391528 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
84391568 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
84391608 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
84391646 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
84391687 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
84391712 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:84391733 original size:79 final size:79
Alignment explanation
Indices: 84391580--84391744 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
84391570 GGACTAAGAT
* * **
84391580 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
84391645 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
84391659 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
84391722 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
84391738 CCGAAGG
1 CCGAAGG
84391745 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:84400327 original size:79 final size:82
Alignment explanation
Indices: 84400216--84400400 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
84400206 GCTACTCGTT
* * *
84400216 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
84400279 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
84400296 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
84400359 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
84400376 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
84400401 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:84400400 original size:40 final size:40
Alignment explanation
Indices: 84400197--84400400 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
84400187 CGGAATTTAA
** *
84400197 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
84400237 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
84400277 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
84400316 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
84400356 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
84400396 CCGGA
1 CCGGA
84400401 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:84403256 original size:53 final size:53
Alignment explanation
Indices: 84403189--84403395 Score: 153
Period size: 53 Copynumber: 3.8 Consensus size: 53
84403179 TTCCTTTTTA
* * *
84403189 AACTTACCATTGCCATGACTTGACATGGTCTTACGTGGTATCCTTGCCTTATG
1 AACTCACCATTGCCATGACTTGACATGGTCTTACATGGGATCCTTGCCTTATG
* * * *
84403242 AACTCACCGTTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATCG
1 AACTCACCATTGCCATGACTTGACATGGTCTTACATGGGATCCTTGCCTTAT-G
** * * * * * * *** * *
84403296 TAGTTTATCAATGCCATGTCTAGACATGGTCTTATATGATTTCCTTGCCTTGTAA
1 -AACTCACCATTGCCATGACTTGACATGGTCTTACATGGGATCCTTGCCTTAT-G
* * * * * *
84403351 AACTTACCAATGCCATGCCTTGCCATGGTCTTACTTGGTATCCTT
1 AACTCACCATTGCCATGACTTGACATGGTCTTACATGGGATCCTT
84403396 AAACCCTAAT
Statistics
Matches: 118, Mismatches: 34, Indels: 3
0.76 0.22 0.02
Matches are distributed among these distances:
53 45 0.38
54 36 0.31
55 37 0.31
ACGTcount: A:0.20, C:0.25, G:0.18, T:0.37
Consensus pattern (53 bp):
AACTCACCATTGCCATGACTTGACATGGTCTTACATGGGATCCTTGCCTTATG
Found at i:84405423 original size:55 final size:53
Alignment explanation
Indices: 84405300--84405485 Score: 196
Period size: 55 Copynumber: 3.5 Consensus size: 53
84405290 TTACCATTGC
* * *
84405300 CATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GAACTCACCAATG-
1 CATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAGAACTCATCAATGT
* * *
84405352 CTATGCCTTGGCATGGTCTTACATGGGACCTTTTCCTTATAGTAACTCATCAATGT
1 C-ATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTATAG-AACTCATCAATGT
* * * * * *
84405408 CATGTCTTGACATGGTTTTACATGATTTCATTGCCTTATAGAACTTATCAATGT
1 CATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTATAGAACTCATCAATGT
*
84405462 CATGCCTTGGCATGGTCTTACATG
1 CATGCCTTGACATGGTCTTACATG
84405486 ATATCCTTAT
Statistics
Matches: 110, Mismatches: 18, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
52 3 0.03
53 30 0.27
54 34 0.31
55 41 0.37
56 2 0.02
ACGTcount: A:0.22, C:0.22, G:0.18, T:0.38
Consensus pattern (53 bp):
CATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAGAACTCATCAATGT
Found at i:84405483 original size:54 final size:54
Alignment explanation
Indices: 84405286--84405490 Score: 198
Period size: 53 Copynumber: 3.8 Consensus size: 54
84405276 TTTCCTTTTT
* * * * * * *
84405286 GAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-
1 GAACTCACCAATGTCATGCCTTGACATGGTCTTACATGATATCATTGCCTTATA
* ** * * *
84405339 GAACTCACCAATG-CTATGCCTTGGCATGGTCTTACATGGGACCTTTTCCTTATA
1 GAACTCACCAATGTC-ATGCCTTGACATGGTCTTACATGATATCATTGCCTTATA
* * * *
84405393 GTAACTCATCAATGTCATGTCTTGACATGGTTTTACATGATTTCATTGCCTTATA
1 G-AACTCACCAATGTCATGCCTTGACATGGTCTTACATGATATCATTGCCTTATA
* * *
84405448 GAACTTATCAATGTCATGCCTTGGCATGGTCTTACATGATATC
1 GAACTCACCAATGTCATGCCTTGACATGGTCTTACATGATATC
84405491 CTTATCTTAC
Statistics
Matches: 124, Mismatches: 24, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
52 1 0.01
53 42 0.34
54 38 0.31
55 42 0.34
56 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.18, T:0.37
Consensus pattern (54 bp):
GAACTCACCAATGTCATGCCTTGACATGGTCTTACATGATATCATTGCCTTATA
Found at i:84409974 original size:14 final size:14
Alignment explanation
Indices: 84409955--84409984 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
84409945 GCCTTTAACT
84409955 TGTCAAAACTCTGC
1 TGTCAAAACTCTGC
84409969 TGTCAAAACTCTGC
1 TGTCAAAACTCTGC
84409983 TG
1 TG
84409985 ACACTTTTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.30
Consensus pattern (14 bp):
TGTCAAAACTCTGC
Found at i:84424522 original size:42 final size:43
Alignment explanation
Indices: 84424472--84424576 Score: 124
Period size: 42 Copynumber: 2.5 Consensus size: 43
84424462 TGAGATCTAT
** *
84424472 GTGTAAGACCATGTCTGGGACATCGGCATCG-TATCTG-ATTTC
1 GTGTAAGACCATGTCTGGGACAGAGGCATCGATA-CTGAATTAC
* *
84424514 GTGTAAGACCCTGTCTGGGACAGAGGCATTGATACTGAATTAC
1 GTGTAAGACCATGTCTGGGACAGAGGCATCGATACTGAATTAC
* *
84424557 ATGTAAGACCACGTCTGGGA
1 GTGTAAGACCATGTCTGGGA
84424577 TGTCGGTATT
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
42 30 0.57
43 23 0.43
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.27
Consensus pattern (43 bp):
GTGTAAGACCATGTCTGGGACAGAGGCATCGATACTGAATTAC
Found at i:84437608 original size:36 final size:37
Alignment explanation
Indices: 84437547--84437625 Score: 99
Period size: 36 Copynumber: 2.2 Consensus size: 37
84437537 CTTATTACGA
* *
84437547 AGTCTTACCCGGACATAATCTCCACACGAAGTTATCG
1 AGTCTTACCCGGACAAAATCTCCACACGAAGTCATCG
* *
84437584 GGTCTTA-CCGGACAAAAT-TCCCACACGTAGTCATCG
1 AGTCTTACCCGGACAAAATCT-CCACACGAAGTCATCG
84437620 AGTCTT
1 AGTCTT
84437626 TAGAGCTCGG
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
35 1 0.03
36 29 0.81
37 6 0.17
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (37 bp):
AGTCTTACCCGGACAAAATCTCCACACGAAGTCATCG
Found at i:84437830 original size:47 final size:47
Alignment explanation
Indices: 84437743--84438277 Score: 883
Period size: 47 Copynumber: 11.4 Consensus size: 47
84437733 CCCTTTGGGA
* * * * * * *
84437743 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
84437790 CCTGTCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84437837 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
84437884 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
84437931 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
84437978 CTTATCACATATATACACTCTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
84438025 CTTATCACACATATACACTTTCACATTCATCACAT-GGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
84438071 CTTATCACACATATACAATTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
84438118 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84438165 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84438212 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84438259 CTTATCACATATATACACT
1 CTTATCACATATATACACT
84438278 GTCTTGGCTG
Statistics
Matches: 462, Mismatches: 25, Indels: 2
0.94 0.05 0.00
Matches are distributed among these distances:
46 45 0.10
47 417 0.90
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:84438153 original size:234 final size:235
Alignment explanation
Indices: 84437743--84438277 Score: 883
Period size: 234 Copynumber: 2.3 Consensus size: 235
84437733 CCCTTTGGGA
* * * * * * * * * * * *
84437743 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCATATATATACAC
1 CTTATCACATATATACACTCTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACAC
* *
84437808 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACAATTTCACATTCATCACATC
*
84437873 GGCCATTAGGCCTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCA
131 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCA
*
84437938 CATATATACACTTTCACATTCATCACATCGGCTATTAGGC
196 CATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
84437978 CTTATCACATATATACACTCTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACAC
1 CTTATCACATATATACACTCTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACAC
*
84438043 TTTCACATTCATCACAT-GGCTATTAGGCCTTATCACACATATACAATTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACAATTTCACATTCATCACATC
84438107 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCA
131 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCA
84438172 CATATATACACTTTCACATTCATCACATCGGCCATTAGGC
196 CATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
84438212 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTCTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACAC
84438277 T
66 T
84438278 GTCTTGGCTG
Statistics
Matches: 279, Mismatches: 21, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
234 210 0.75
235 69 0.25
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (235 bp):
CTTATCACATATATACACTCTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACAATTTCACATTCATCACATC
GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCA
CATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:84441805 original size:34 final size:33
Alignment explanation
Indices: 84441739--84441813 Score: 105
Period size: 34 Copynumber: 2.2 Consensus size: 33
84441729 ATATCAGTCG
84441739 CAGTATCAGTGTGGGCCTTAACCCAATACAGTAA
1 CAGTATCAGTGTGGGCCTTAACCCAATACAGT-A
* * * *
84441773 TAGTATCAGTGTGGGCCTTAGCCCATTTCAGTA
1 CAGTATCAGTGTGGGCCTTAACCCAATACAGTA
84441806 CAGTATCA
1 CAGTATCA
84441814 AAAATGCATA
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
33 8 0.22
34 28 0.78
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (33 bp):
CAGTATCAGTGTGGGCCTTAACCCAATACAGTA
Found at i:84443233 original size:18 final size:20
Alignment explanation
Indices: 84443193--84443236 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
84443183 CAAAACACAA
*
84443193 AGAAGGAAAACAAAATTGAG
1 AGAAGGAAAACAAAAGTGAG
*
84443213 AGAAGGAAGA-AAAAGTG-G
1 AGAAGGAAAACAAAAGTGAG
84443231 AGAAGG
1 AGAAGG
84443237 GACCAAAAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 7 0.32
19 6 0.27
20 9 0.41
ACGTcount: A:0.57, C:0.02, G:0.34, T:0.07
Consensus pattern (20 bp):
AGAAGGAAAACAAAAGTGAG
Found at i:84448077 original size:29 final size:30
Alignment explanation
Indices: 84448021--84448126 Score: 114
Period size: 29 Copynumber: 3.7 Consensus size: 30
84448011 ACATACATGT
* *
84448021 ATATGGCCTA-CTAGGCCCAATCT-TATTC
1 ATATGGCCCATCTAGGCCCAATTTATATTC
* *
84448049 AAATGGGCCATCT-GGCCCAATTTATATTC
1 ATATGGCCCATCTAGGCCCAATTTATATTC
* * *
84448078 TTATGGCCCA-CTAGGCCCAATTCACATTC
1 ATATGGCCCATCTAGGCCCAATTTATATTC
84448107 ATATGGCCCAT-TAGGCCCAA
1 ATATGGCCCATCTAGGCCCAA
84448127 ATCATATTAT
Statistics
Matches: 64, Mismatches: 10, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
28 18 0.28
29 46 0.72
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.28
Consensus pattern (30 bp):
ATATGGCCCATCTAGGCCCAATTTATATTC
Found at i:84449595 original size:16 final size:16
Alignment explanation
Indices: 84449574--84449605 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
84449564 AAAATTCAAA
*
84449574 ATTTTGGGATTTTTGG
1 ATTTTGAGATTTTTGG
84449590 ATTTTGAGATTTTTGG
1 ATTTTGAGATTTTTGG
84449606 GGCATTACAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.16, C:0.00, G:0.28, T:0.56
Consensus pattern (16 bp):
ATTTTGAGATTTTTGG
Found at i:84449916 original size:18 final size:19
Alignment explanation
Indices: 84449890--84449930 Score: 50
Period size: 18 Copynumber: 2.2 Consensus size: 19
84449880 GGCCTCTCAG
84449890 CGGTAGCTG-ATCACC-CCT
1 CGGTAGCTGTA-CACCACCT
*
84449908 CGGTGGCTGTACACCACCT
1 CGGTAGCTGTACACCACCT
84449927 CGGT
1 CGGT
84449931 CCACGACTGG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.15, C:0.37, G:0.27, T:0.22
Consensus pattern (19 bp):
CGGTAGCTGTACACCACCT
Found at i:84466255 original size:40 final size:40
Alignment explanation
Indices: 84466161--84466305 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
84466151 TACTCGAATG
*
84466161 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
84466202 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
84466242 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
84466282 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
84466306 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:84474291 original size:40 final size:40
Alignment explanation
Indices: 84474197--84474341 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
84474187 TACTCGAATG
*
84474197 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
84474238 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
84474278 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
84474318 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
84474342 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:84476833 original size:28 final size:29
Alignment explanation
Indices: 84476718--84476831 Score: 167
Period size: 29 Copynumber: 4.0 Consensus size: 29
84476708 GCAGAACTAT
*
84476718 GAATATGATTTGGGCCTAATGGGCCATAC
1 GAATGTGATTTGGGCCTAATGGGCCATAC
*
84476747 GAATGTGATTTGGGCCTAATGTGCCATAC
1 GAATGTGATTTGGGCCTAATGGGCCATAC
*
84476776 GAATGTGATTTGGGCCTAATGGGCCATAT
1 GAATGTGATTTGGGCCTAATGGGCCATAC
** *
84476805 GAATGACA-TTGGGCCTAGTGGGCCATA
1 GAATGTGATTTGGGCCTAATGGGCCATA
84476832 TGCAAGTATG
Statistics
Matches: 78, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
28 18 0.23
29 60 0.77
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (29 bp):
GAATGTGATTTGGGCCTAATGGGCCATAC
Found at i:84480211 original size:40 final size:40
Alignment explanation
Indices: 84480165--84480309 Score: 137
Period size: 40 Copynumber: 3.6 Consensus size: 40
84480155 CTTGCACAAG
* * *
84480165 GCCTTCGGGTCTTAACTCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAACCCGGATATAGTCACTAGCACAAAT
* * *
84480205 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAACCCGGATATAGTCACTAGCACAAAT
* ** * * * *
84480245 GCCTTCGGATCTTAGTCCGGATGTAGTCGCTTAGGACAAAA
1 GCCTTCGGGTCTTAACCCGGATATAGTCAC-TAGCACAAAT
* * *
84480286 GCCTTCGAGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAACCCGGATAT
84480310 CATTCGAGTA
Statistics
Matches: 87, Mismatches: 17, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
40 60 0.69
41 27 0.31
ACGTcount: A:0.24, C:0.25, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAACCCGGATATAGTCACTAGCACAAAT
Found at i:84480300 original size:41 final size:39
Alignment explanation
Indices: 84480182--84480309 Score: 148
Period size: 40 Copynumber: 3.2 Consensus size: 39
84480172 GGTCTTAACT
* * * *
84480182 CGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGCC
1 CGGATATAGTCGCTAGCACAAAAGCCTTC-GGACTTAGCC
* *
84480222 CGGATATAGTCGCTAGCACAAATGCCTTCGGATCTTAGTC
1 CGGATATAGTCGCTAGCACAAAAGCCTTCGGA-CTTAGCC
* *
84480262 CGGATGTAGTCGCTTAGGACAAAAGCCTTCGAGACTTAGCC
1 CGGATATAGTCGC-TAGCACAAAAGCCTTCG-GACTTAGCC
84480303 CGGATAT
1 CGGATAT
84480310 CATTCGAGTA
Statistics
Matches: 76, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
39 3 0.04
40 44 0.58
41 27 0.36
42 2 0.03
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (39 bp):
CGGATATAGTCGCTAGCACAAAAGCCTTCGGACTTAGCC
Found at i:84490978 original size:29 final size:29
Alignment explanation
Indices: 84490882--84490967 Score: 154
Period size: 29 Copynumber: 3.0 Consensus size: 29
84490872 GCATGACTAT
*
84490882 GAATGTGATTTGGGCCTAATGGGTCATAC
1 GAATGTGATTTGGGCCTAATGGGCCATAC
*
84490911 GAATGTGATTTGGGCCTAATGAGCCATAC
1 GAATGTGATTTGGGCCTAATGGGCCATAC
84490940 GAATGTGATTTGGGCCTAATGGGCCATA
1 GAATGTGATTTGGGCCTAATGGGCCATA
84490968 TAAATGAGAT
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 54 1.00
ACGTcount: A:0.26, C:0.15, G:0.30, T:0.29
Consensus pattern (29 bp):
GAATGTGATTTGGGCCTAATGGGCCATAC
Found at i:84492156 original size:17 final size:18
Alignment explanation
Indices: 84492123--84492156 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
84492113 TCTAAGGAAG
84492123 GGTTTTCAATGAAAACAA
1 GGTTTTCAATGAAAACAA
*
84492141 GGTTTTCGAT-AAAACA
1 GGTTTTCAATGAAAACA
84492157 CTTCAATGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.29
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAA
Found at i:84495623 original size:45 final size:45
Alignment explanation
Indices: 84495559--84495647 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
84495549 CAAATACCAT
*
84495559 AGCCAATAACTCTTTCTCAATAGTCATGAAATTCAGCTGTGCATC
1 AGCCAATAACTCTTTCTCAATAGTCATGAAATTCAGCTGGGCATC
*
84495604 AGCCAATAACTCTTTCTCAATAGTCATGTAATTCAGCTGGGCAT
1 AGCCAATAACTCTTTCTCAATAGTCATGAAATTCAGCTGGGCAT
84495648 TTATCATGGT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.31
Consensus pattern (45 bp):
AGCCAATAACTCTTTCTCAATAGTCATGAAATTCAGCTGGGCATC
Found at i:84497510 original size:44 final size:43
Alignment explanation
Indices: 84497460--84497609 Score: 146
Period size: 44 Copynumber: 3.5 Consensus size: 43
84497450 TGAATTATCA
84497460 TGTAAGACCATGTCCGGGACACAGGCATTGAATTGAAATTTACG
1 TGTAAGACCATGTCCGGGACACAGGCATTGAATTG-AATTTACG
* * *
84497504 TGTAAGACCATGACCGGGACATC-GACATTGTATCT-AATTT-CG
1 TGTAAGACCATGTCCGGGACA-CAGGCATTGAAT-TGAATTTACG
* * * * * * *
84497546 TATAAGACCCTGTCTGGGACAGAGGCATCGATACTGAA-TTACA
1 TGTAAGACCATGTCCGGGACACAGGCATTGA-ATTGAATTTACG
84497589 TGTAAGACCATGTCCGGGACA
1 TGTAAGACCATGTCCGGGACA
84497610 TTGGCATTAT
Statistics
Matches: 84, Mismatches: 16, Indels: 13
0.74 0.14 0.12
Matches are distributed among these distances:
42 27 0.32
43 27 0.32
44 28 0.33
45 2 0.02
ACGTcount: A:0.31, C:0.21, G:0.24, T:0.25
Consensus pattern (43 bp):
TGTAAGACCATGTCCGGGACACAGGCATTGAATTGAATTTACG
Found at i:84497616 original size:43 final size:43
Alignment explanation
Indices: 84497443--84497621 Score: 161
Period size: 43 Copynumber: 4.2 Consensus size: 43
84497433 ACGTTGGTAT
*
84497443 ATTGAT-CTGAATTATCATGTAAGACCATGTCCGGGACACAGGC
1 ATTGATACTGAATTA-CATGTAAGACCATGTCCGGGACATAGGC
* * * * *
84497486 ATTGA-ATTGAAATTTACGTGTAAGACCATGACCGGGACATCGAC
1 ATTGATACTG-AA-TTACATGTAAGACCATGTCCGGGACATAGGC
* * * * * *
84497530 ATTG-TATCT-AATTTCGTATAAGACCCTGTCTGGGACAGAGGC
1 ATTGATA-CTGAATTACATGTAAGACCATGTCCGGGACATAGGC
* *
84497572 ATCGATACTGAATTACATGTAAGACCATGTCCGGGACATTGGC
1 ATTGATACTGAATTACATGTAAGACCATGTCCGGGACATAGGC
84497615 ATT-ATAC
1 ATTGATAC
84497622 CCGTTTATGA
Statistics
Matches: 105, Mismatches: 24, Indels: 15
0.73 0.17 0.10
Matches are distributed among these distances:
42 32 0.30
43 39 0.37
44 30 0.29
45 4 0.04
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (43 bp):
ATTGATACTGAATTACATGTAAGACCATGTCCGGGACATAGGC
Found at i:84504283 original size:42 final size:43
Alignment explanation
Indices: 84504157--84504318 Score: 143
Period size: 44 Copynumber: 3.7 Consensus size: 43
84504147 GTTGGTATTG
* * * *
84504157 ATCTGAATTATCGTGTAAGACCGTGTCTGGAACACAGGTATCAA
1 ATCTGAATT-TCGTGTAAGACCATGTCTGGGACACAGGCATCAT
*
84504201 AT-TGAAATTTACGTGTAAGACCATGTCCGGGACATC-GGCATCAT
1 ATCTG-AATTT-CGTGTAAGACCATGTCTGGGACA-CAGGCATCAT
* * *
84504245 ATCT-AATTTCGTATAAGACCCTGTCTGGGACAGAGGCATCGAT
1 ATCTGAATTTCGTGTAAGACCATGTCTGGGACACAGGCATC-AT
* * * *
84504288 AT-TGAATTACATGTAAGACCACGTCCGGGAC
1 ATCTGAATTTCGTGTAAGACCATGTCTGGGAC
84504319 GTTGGCATTA
Statistics
Matches: 96, Mismatches: 15, Indels: 15
0.76 0.12 0.12
Matches are distributed among these distances:
42 27 0.28
43 33 0.34
44 34 0.35
45 2 0.02
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (43 bp):
ATCTGAATTTCGTGTAAGACCATGTCTGGGACACAGGCATCAT
Found at i:84504318 original size:43 final size:42
Alignment explanation
Indices: 84504209--84504318 Score: 116
Period size: 42 Copynumber: 2.6 Consensus size: 42
84504199 AAATTGAAAT
* **
84504209 TTACGTGTAAGACCATGTCCGGGACATCGGCATCATATCTAA
1 TTACGTGTAAGACCACGTCCGGGACAGAGGCATCATATCTAA
* * *
84504251 TTTCGTATAAGACC-CTGTCTGGGACAGAGGCATCGATAT-TGAA
1 TTACGTGTAAGACCAC-GTCCGGGACAGAGGCATC-ATATCT-AA
*
84504294 TTACATGTAAGACCACGTCCGGGAC
1 TTACGTGTAAGACCACGTCCGGGAC
84504319 GTTGGCATTA
Statistics
Matches: 54, Mismatches: 10, Indels: 7
0.76 0.14 0.10
Matches are distributed among these distances:
42 28 0.52
43 25 0.46
44 1 0.02
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.25
Consensus pattern (42 bp):
TTACGTGTAAGACCACGTCCGGGACAGAGGCATCATATCTAA
Found at i:84504326 original size:43 final size:42
Alignment explanation
Indices: 84504209--84504326 Score: 107
Period size: 43 Copynumber: 2.8 Consensus size: 42
84504199 AAATTGAAAT
* * *
84504209 TTACGTGTAAGACCATGTCCGGGACATCGGCATCATATCTAA
1 TTACGTGTAAGACCACGTCCGGGACGTAGGCATCATATCTAA
* * *
84504251 TTTCGTATAAGACC-CTGTCTGGGACAG-AGGCATCGATAT-TGAA
1 TTACGTGTAAGACCAC-GTCCGGGAC-GTAGGCATC-ATATCT-AA
* *
84504294 TTACATGTAAGACCACGTCCGGGACGTTGGCAT
1 TTACGTGTAAGACCACGTCCGGGACGTAGGCAT
84504327 TATACCCGTT
Statistics
Matches: 59, Mismatches: 11, Indels: 11
0.73 0.14 0.14
Matches are distributed among these distances:
42 28 0.47
43 30 0.51
44 1 0.02
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.26
Consensus pattern (42 bp):
TTACGTGTAAGACCACGTCCGGGACGTAGGCATCATATCTAA
Found at i:84508202 original size:12 final size:12
Alignment explanation
Indices: 84508168--84508194 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
84508158 TGGATTATTA
84508168 TTGATATATAAT
1 TTGATATATAAT
84508180 TTGATATATAAT
1 TTGATATATAAT
84508192 TTG
1 TTG
84508195 TTGTATAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.37, C:0.00, G:0.11, T:0.52
Consensus pattern (12 bp):
TTGATATATAAT
Found at i:84516795 original size:15 final size:16
Alignment explanation
Indices: 84516759--84516788 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
84516749 ACATATCATT
84516759 TATTTCATTATATCAA
1 TATTTCATTATATCAA
84516775 TATTTCA-TATATCA
1 TATTTCATTATATCA
84516789 TAGTTTCCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.37, C:0.13, G:0.00, T:0.50
Consensus pattern (16 bp):
TATTTCATTATATCAA
Found at i:84523190 original size:9 final size:9
Alignment explanation
Indices: 84523176--84523203 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
84523166 CTTACCTTCT
84523176 TTTCTCTCC
1 TTTCTCTCC
84523185 TTTCTCTCC
1 TTTCTCTCC
84523194 TTTCTCTCC
1 TTTCTCTCC
84523203 T
1 T
84523204 CAGTAGCTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.00, C:0.43, G:0.00, T:0.57
Consensus pattern (9 bp):
TTTCTCTCC
Found at i:84527031 original size:15 final size:15
Alignment explanation
Indices: 84526999--84527027 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
84526989 ATTTTATATG
84526999 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
84527014 TTTATT-TGTGTGAA
1 TTTATTATGTGTGAA
84527028 ATTTTCGTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.24, C:0.00, G:0.21, T:0.55
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:84528226 original size:56 final size:54
Alignment explanation
Indices: 84528160--84528325 Score: 237
Period size: 56 Copynumber: 3.0 Consensus size: 54
84528150 GACCATGGCA
84528160 TCGATATATGTGTGCGAGTAAGACCACGTTTTATACGTTGGCATCGATATGTGAC
1 TCGATATATGTGTGCGAGTAAGACCACGTTTTATA-GTTGGCATCGATATGTGAC
*
84528215 TTCGATATATGTGTGCGATTAAGACCACGTTTTATATGTTGGCATCGATATGTGAC
1 -TCGATATATGTGTGCGAGTAAGACCACGTTTTATA-GTTGGCATCGATATGTGAC
*
84528271 TCAGATATATGTGTGCGAGTAAGACC-CTGTTTGGGATAG-TGGCATCGATATGTGA
1 TC-GATATATGTGTGCGAGTAAGACCAC-GTTT--TATAGTTGGCATCGATATGTGA
84528326 TTACATGTAA
Statistics
Matches: 102, Mismatches: 4, Indels: 8
0.89 0.04 0.07
Matches are distributed among these distances:
55 3 0.03
56 95 0.93
57 1 0.01
58 3 0.03
ACGTcount: A:0.25, C:0.14, G:0.27, T:0.34
Consensus pattern (54 bp):
TCGATATATGTGTGCGAGTAAGACCACGTTTTATAGTTGGCATCGATATGTGAC
Found at i:84529117 original size:24 final size:24
Alignment explanation
Indices: 84529089--84529140 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
84529079 TATCAACCAA
84529089 ACATTTATGTTAACCAAGTGAAAC
1 ACATTTATGTTAACCAAGTGAAAC
84529113 ACATTTATGTTAACCAAGTGAAAC
1 ACATTTATGTTAACCAAGTGAAAC
84529137 ACAT
1 ACAT
84529141 ATAGTAACTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.42, C:0.17, G:0.12, T:0.29
Consensus pattern (24 bp):
ACATTTATGTTAACCAAGTGAAAC
Found at i:84529817 original size:40 final size:40
Alignment explanation
Indices: 84529732--84529959 Score: 307
Period size: 40 Copynumber: 5.7 Consensus size: 40
84529722 TCCAAACACA
* * * *
84529732 AATGCCTTCGGGACTTAGCTCGGATATAAC-ACCAGTACG
1 AATGCCTTAGGGACTTAACCCGGATATAACAACCAGCACG
* ** **
84529771 AGTGCCTTAGAAACTTGGCCCGGATATAACAACCAGCACG
1 AATGCCTTAGGGACTTAACCCGGATATAACAACCAGCACG
*
84529811 AATGCCTTCA-GGACTTAGCCCGGATATAACAACCAGCACG
1 AATGCCTT-AGGGACTTAACCCGGATATAACAACCAGCACG
*
84529851 AATGCCTTCGGGACTTAACCCGGATATAACAACCAGCACG
1 AATGCCTTAGGGACTTAACCCGGATATAACAACCAGCACG
*
84529891 AATGCCTTTGGGACTTAACCCGGATATAACAACCAGCACG
1 AATGCCTTAGGGACTTAACCCGGATATAACAACCAGCACG
* *
84529931 AAAGCCTTCGGGACTTAACCCGGATATAA
1 AATGCCTTAGGGACTTAACCCGGATATAA
84529960 TCCTCAATTA
Statistics
Matches: 170, Mismatches: 16, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
39 24 0.14
40 145 0.85
41 1 0.01
ACGTcount: A:0.32, C:0.28, G:0.21, T:0.19
Consensus pattern (40 bp):
AATGCCTTAGGGACTTAACCCGGATATAACAACCAGCACG
Found at i:84529886 original size:80 final size:80
Alignment explanation
Indices: 84529732--84529959 Score: 341
Period size: 80 Copynumber: 2.9 Consensus size: 80
84529722 TCCAAACACA
* * * * ** **
84529732 AATGCCTTCGGGACTTAGCTCGGATATAAC-ACCAGTACGAGTGCCTTAGAAACTTGGCCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGATATAACAACCAGCACGAATGCCTTCGGGACTTAACCCGGAT
84529796 ATAACAACCAGCACG
66 ATAACAACCAGCACG
*
84529811 AATGCCTTCAGGACTTAGCCCGGATATAACAACCAGCACGAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGATATAACAACCAGCACGAATGCCTTCGGGACTTAACCCGGAT
84529876 ATAACAACCAGCACG
66 ATAACAACCAGCACG
* * *
84529891 AATGCCTTTGGGACTTAACCCGGATATAACAACCAGCACGAAAGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGATATAACAACCAGCACGAATGCCTTCGGGACTTAACCCGGAT
84529956 ATAA
66 ATAA
84529960 TCCTCAATTA
Statistics
Matches: 135, Mismatches: 13, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
79 28 0.21
80 107 0.79
ACGTcount: A:0.32, C:0.28, G:0.21, T:0.19
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGATATAACAACCAGCACGAATGCCTTCGGGACTTAACCCGGAT
ATAACAACCAGCACG
Found at i:84529945 original size:120 final size:119
Alignment explanation
Indices: 84529732--84529959 Score: 339
Period size: 120 Copynumber: 1.9 Consensus size: 119
84529722 TCCAAACACA
* * * * **
84529732 AATGCCTTCGGGACTTAGCTCGGATATAACACCAGTACGAGTGCCTTAGAAACTTGGCCCGGATA
1 AATGCCTTCGGGACTTAACCCGGATATAACACCAGCACGAATGCCTTAGAAACTTAACCCGGATA
* *
84529797 TAACAACCAGCACGAATGCCTTCAGGACTTAGCCCGGATATAACAACCAGCACG
66 TAACAACCAGCACGAAAGCCTTCAGGACTTAACCCGGATATAACAACCAGCACG
* **
84529851 AATGCCTTCGGGACTTAACCCGGATATAACAACCAGCACGAATGCCTTTGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAACCCGGATATAAC-ACCAGCACGAATGCCTTAGAAACTTAACCCGGAT
*
84529916 ATAACAACCAGCACGAAAGCCTTCGGGACTTAACCCGGATATAA
65 ATAACAACCAGCACGAAAGCCTTCAGGACTTAACCCGGATATAA
84529960 TCCTCAATTA
Statistics
Matches: 96, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
119 28 0.29
120 68 0.71
ACGTcount: A:0.32, C:0.28, G:0.21, T:0.19
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAACCCGGATATAACACCAGCACGAATGCCTTAGAAACTTAACCCGGATA
TAACAACCAGCACGAAAGCCTTCAGGACTTAACCCGGATATAACAACCAGCACG
Found at i:84545042 original size:43 final size:43
Alignment explanation
Indices: 84544909--84545060 Score: 200
Period size: 43 Copynumber: 3.5 Consensus size: 43
84544899 CAACGAACTT
* * *
84544909 GCACACTTAATGCTAATTAATTAACCGAAGCTATAATTGTATCA
1 GCACACTTAATGCCAATTAATTAGCTGAAGCTATAATTGTAT-A
*
84544953 -CACACTTAATGCCAATTAATTAGCTGAAGCTATAATTGTATC
1 GCACACTTAATGCCAATTAATTAGCTGAAGCTATAATTGTATA
* *
84544995 GCACACTTAGTGCCAATTAATTAGCTGAAGTTATAATTGTATA
1 GCACACTTAATGCCAATTAATTAGCTGAAGCTATAATTGTATA
* *
84545038 GCACATTTAGTGCC-ATTATATTA
1 GCACACTTAATGCCAATTA-ATTA
84545061 AACCAAACTT
Statistics
Matches: 98, Mismatches: 8, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
42 4 0.04
43 94 0.96
ACGTcount: A:0.36, C:0.17, G:0.13, T:0.34
Consensus pattern (43 bp):
GCACACTTAATGCCAATTAATTAGCTGAAGCTATAATTGTATA
Found at i:84547008 original size:79 final size:81
Alignment explanation
Indices: 84546906--84547090 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
84546896 GCTCCTCGTT
* *
84546906 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
84546969 GGATTTAGTAAC-TCGCA
64 GGATATAGTAACTTAGCA
* **
84546986 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
84547050 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
84547066 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
84547091 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:84547090 original size:40 final size:40
Alignment explanation
Indices: 84546906--84547090 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
84546896 GCTCCTCGTT
* *
84546906 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
84546946 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
84546986 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
84547025 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
84547066 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
84547091 CATCATTCAA
Statistics
Matches: 126, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.02
39 32 0.25
40 80 0.63
41 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:84552010 original size:46 final size:44
Alignment explanation
Indices: 84551907--84552083 Score: 149
Period size: 46 Copynumber: 3.8 Consensus size: 44
84551897 TACATTATGA
* ***
84551907 GAGCCAATGTAAGACCATGTTTGGGACATGGCATCGGCATTGGGAC
1 GAGCCAGTGTAAGA-CATGTTTGGGACAT-GCATCGGCATCAAGAC
* *
84551953 GAGCGCTAGTGTAAGACATGTTTGGGACATGCATCGGCCTCAAGAT
1 GAGC-C-AGTGTAAGACATGTTTGGGACATGCATCGGCATCAAGAC
* * *
84551999 GTAAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCAATGAA-AT
1 G--AGCCAGTGTAAGACATGTTTGGGACATGCATCGGC-ATCAAGAC
* * * *
84552045 GCGTCAGTGTAAGACCATGTCTGGGACAGGGCATCGGCA
1 GAGCCAGTGTAAGA-CATGTTTGGGACA-TGCATCGGCA
84552084 ACTTACTCCA
Statistics
Matches: 112, Mismatches: 12, Indels: 15
0.81 0.09 0.11
Matches are distributed among these distances:
44 11 0.10
45 14 0.12
46 57 0.51
47 19 0.17
48 11 0.10
ACGTcount: A:0.27, C:0.20, G:0.32, T:0.21
Consensus pattern (44 bp):
GAGCCAGTGTAAGACATGTTTGGGACATGCATCGGCATCAAGAC
Done.