Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 248 of 295
Found at i:85328869 original size:28 final size:28
Alignment explanation
Indices: 85328829--85328893 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
85328819 ATGTACTAGA
* *
85328829 ATACCCCTATGTATGTAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
*
85328857 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
85328885 ATACCCCTA
1 ATACCCCTA
85328894 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.34, C:0.26, G:0.08, T:0.32
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:85329058 original size:27 final size:27
Alignment explanation
Indices: 85329010--85329089 Score: 115
Period size: 27 Copynumber: 2.9 Consensus size: 27
85329000 CTGGTGGCTA
85329010 TGCCACAAATTATCTGTTCTGGTGGAAC
1 TGCCACAAA-TATCTGTTCTGGTGGAAC
* *
85329038 TGCCACATATATCTGTTCTGGTGGCAC
1 TGCCACAAATATCTGTTCTGGTGGAAC
85329065 TGCCACAAAATATCTGTATCTGGTG
1 TGCCAC-AAATATCTGT-TCTGGTG
85329090 ACTCTATCAC
Statistics
Matches: 47, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
27 23 0.49
28 17 0.36
29 7 0.15
ACGTcount: A:0.24, C:0.23, G:0.21, T:0.33
Consensus pattern (27 bp):
TGCCACAAATATCTGTTCTGGTGGAAC
Found at i:85329100 original size:29 final size:28
Alignment explanation
Indices: 85329012--85329100 Score: 83
Period size: 27 Copynumber: 3.2 Consensus size: 28
85329002 GGTGGCTATG
* *
85329012 CCACAAATTATCTGTTCTGGTGGA-ACTG
1 CCACAAAATATCTGTTCTGGT-GACACTA
* * *
85329040 CCAC-ATATATCTGTTCTGGTGGCACTG
1 CCACAAAATATCTGTTCTGGTGACACTA
*
85329067 CCACAAAATATCTGTATCTGGTGACTCTA
1 CCACAAAATATCTGT-TCTGGTGACACTA
*
85329096 TCACA
1 CCACA
85329101 TTTTCTGTAT
Statistics
Matches: 50, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
26 1 0.02
27 22 0.44
28 13 0.26
29 14 0.28
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (28 bp):
CCACAAAATATCTGTTCTGGTGACACTA
Found at i:85329108 original size:55 final size:56
Alignment explanation
Indices: 85329000--85329114 Score: 130
Period size: 55 Copynumber: 2.1 Consensus size: 56
85328990 AGGAAGCGTC
* *
85329000 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGAACTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGGAACTACCACATATATCTGTAT
* * *
85329055 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGT-GACTCTATCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGGA-ACTACCACATATATCTGTAT
85329111 CTGG
1 CTGG
85329115 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
54 1 0.02
55 32 0.63
56 18 0.35
ACGTcount: A:0.22, C:0.23, G:0.21, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGGAACTACCACATATATCTGTAT
Found at i:85341407 original size:27 final size:27
Alignment explanation
Indices: 85341377--85341554 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
85341367 ATATTGAGTC
* * * *
85341377 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
85341404 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
85341431 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
85341459 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
85341486 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
85341513 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
85341540 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
85341555 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:85341516 original size:82 final size:81
Alignment explanation
Indices: 85341398--85341553 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
85341388 TGCTATATAA
* *
85341398 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
85341463 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
85341480 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
85341544 CACTTAGTGC
65 CACTTAGTGC
85341554 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:85343495 original size:47 final size:47
Alignment explanation
Indices: 85343417--85344011 Score: 1001
Period size: 47 Copynumber: 12.6 Consensus size: 47
85343407 CCCTTCGGGA
* * * * * *
85343417 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
85343464 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
85343511 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
85343558 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
85343607 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
85343654 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
85343701 CTTATCACATATATACACTTTCACATTCATCAAATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
85343748 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
85343795 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
85343842 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
85343889 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
85343936 CTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
85343983 CTTATCACATATATATACACTTTCACATT
1 CTTATCAC--ATATATACACTTTCACATT
85344012 TATTCAAATA
Statistics
Matches: 517, Mismatches: 27, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
47 452 0.87
49 65 0.13
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:85347319 original size:48 final size:48
Alignment explanation
Indices: 85347243--85347473 Score: 224
Period size: 48 Copynumber: 4.9 Consensus size: 48
85347233 TAGGGTTAGG
*
85347243 TGTGATCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATCGATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
* *
85347291 TGTGATCTCATGTAAGACCATGTCTGGGACATGACATTGGCATCGATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
* * * * *
85347339 TTTGATCCAATGTAAGACTATATCTGGGATATGGCATTGGCATCGATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
** * * * * * *
85347387 TAAGA-CATCGTGTAAGACCATAG-CTAGG-C-T---ATCGGCTTCGATC
1 TGTGATC-CCATGTAAGACCAT-GTCTGGGACATGGCATTGGCATCGATA
* * *
85347430 TGTGATCCCATGTAAGACCATATCTTGGATATGGCATTGGCATC
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATC
85347474 TTACTATGTG
Statistics
Matches: 143, Mismatches: 31, Indels: 18
0.74 0.16 0.09
Matches are distributed among these distances:
43 29 0.20
44 1 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 110 0.77
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (48 bp):
TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
Found at i:85347463 original size:91 final size:94
Alignment explanation
Indices: 85347243--85347473 Score: 258
Period size: 96 Copynumber: 2.5 Consensus size: 94
85347233 TAGGGTTAGG
* * **
85347243 TGTGATCCCATGTAAGACCATGT-TTGGGACATGGCATTGGCATCGATATGTGATCTCATGTAAG
1 TGTGATCCCATGTAAGACCATATCTT-GGATATGGCATTGGCATCGATATAAGATCTCATGTAAG
* *
85347307 ACCATGTCTGGGACATGACATTGGCATCGATA
65 ACCATGTCTAGGACAT-A-ATCGGCATCGATA
* * * * *
85347339 TTTGATCCAATGTAAGACTATATCTGGGATATGGCATTGGCATCGATATAAGA-CATCGTGTAAG
1 TGTGATCCCATGTAAGACCATATCTTGGATATGGCATTGGCATCGATATAAGATC-TCATGTAAG
* *
85347403 ACCATAG-CTAGG-C-T-ATCGGCTTCGATC
65 ACCAT-GTCTAGGACATAATCGGCATCGATA
85347430 TGTGATCCCATGTAAGACCATATCTTGGATATGGCATTGGCATC
1 TGTGATCCCATGTAAGACCATATCTTGGATATGGCATTGGCATC
85347474 TTACTATGTG
Statistics
Matches: 115, Mismatches: 17, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
91 50 0.43
94 1 0.01
95 2 0.02
96 60 0.52
97 2 0.02
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (94 bp):
TGTGATCCCATGTAAGACCATATCTTGGATATGGCATTGGCATCGATATAAGATCTCATGTAAGA
CCATGTCTAGGACATAATCGGCATCGATA
Found at i:85348520 original size:30 final size:29
Alignment explanation
Indices: 85348466--85348525 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 29
85348456 CAGGTAGACA
*
85348466 CATGGGCGTGTGTCTAGACCGTGTGTGCCC
1 CATGGGCGTGTATCTAGACCGTGTGT-CCC
*
85348496 CATGGGCGTGTTATCTAG-CTGTGTGTCCC
1 CATGGGCGTG-TATCTAGACCGTGTGTCCC
85348525 C
1 C
85348526 TGCACCCTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
29 4 0.15
30 17 0.63
31 6 0.22
ACGTcount: A:0.10, C:0.27, G:0.33, T:0.30
Consensus pattern (29 bp):
CATGGGCGTGTATCTAGACCGTGTGTCCC
Found at i:85360872 original size:47 final size:47
Alignment explanation
Indices: 85360818--85361246 Score: 624
Period size: 47 Copynumber: 9.1 Consensus size: 47
85360808 TTAGGATTTT
** *
85360818 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
85360865 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
85360912 ATGTGGTGAATATGAACATGCATATACGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
85360959 ATGTGATGAATGTGAACATGCATATATATGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
85361006 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCTAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
85361053 ATGTGGTGAATATGAACATGCATATATGTGATAAGACCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
85361100 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
85361147 ATATGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
85361194 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCTGAATGGTCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
85361241 ATGTGA
1 ATGTGA
85361247 AATATATATA
Statistics
Matches: 338, Mismatches: 44, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 338 1.00
ACGTcount: A:0.33, C:0.12, G:0.28, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:85360920 original size:25 final size:25
Alignment explanation
Indices: 85360845--85360920 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
85360835 GTGTATATAT
85360845 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
85360870 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
85360892 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
85360917 GTGA
1 GTGA
85360921 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:85360991 original size:141 final size:141
Alignment explanation
Indices: 85360817--85361246 Score: 743
Period size: 141 Copynumber: 3.0 Consensus size: 141
85360807 TTTAGGATTT
** *
85360817 TATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
1 TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
*
85360882 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATACGTGATAAG
66 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAG
85360947 GCCGAATGGCC
131 GCCGAATGGCC
*
85360958 TATGTGATGAATGTGAACATGCATATATATGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
1 TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
*
85361023 ATGCATATGTGTGATAAGGCCTAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAG
66 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAG
*
85361088 ACCGAATGGCC
131 GCCGAATGGCC
*
85361099 TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATATGATGAATGTGAGC
1 TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
* *
85361164 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGGTAAA
66 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAG
* *
85361229 GCTGAATGGTC
131 GCCGAATGGCC
*
85361240 AATGTGA
1 TATGTGA
85361247 AATATATATA
Statistics
Matches: 273, Mismatches: 16, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
141 273 1.00
ACGTcount: A:0.33, C:0.12, G:0.28, T:0.27
Consensus pattern (141 bp):
TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGC
ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAG
GCCGAATGGCC
Found at i:85361633 original size:37 final size:37
Alignment explanation
Indices: 85361451--85361630 Score: 279
Period size: 37 Copynumber: 4.9 Consensus size: 37
85361441 GGAAATATAT
* *
85361451 TCCGGGTGAGACCCGATGACTACCTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGAGTATG
*
85361488 TCCGGGTAAGACCCGATGACTACGTTTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGAGTATG
*
85361525 CCCGGGTAAGACCCGATGACTACGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGAGTATG
* * *
85361562 TTCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGAGTATG
* *
85361599 TCCGGGTAAGACCCGATAACTTCGTGTGGAGA
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGA
85361631 TTTCATCTGA
Statistics
Matches: 131, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 131 1.00
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.23
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGAGTATG
Found at i:85372598 original size:25 final size:27
Alignment explanation
Indices: 85372539--85372599 Score: 67
Period size: 25 Copynumber: 2.4 Consensus size: 27
85372529 TTTTTTTCCC
*
85372539 TTAA-ATTTTAAATTTTATTTAATCAT
1 TTAATATTTTAAATTTTATTGAATCAT
* *
85372565 TTAAT-TTTTCAA-TTTATTGAATTA-
1 TTAATATTTTAAATTTTATTGAATCAT
85372589 TTAATATTTTA
1 TTAATATTTTA
85372600 TATTAATTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
24 5 0.17
25 14 0.48
26 10 0.34
ACGTcount: A:0.36, C:0.03, G:0.02, T:0.59
Consensus pattern (27 bp):
TTAATATTTTAAATTTTATTGAATCAT
Found at i:85378912 original size:30 final size:30
Alignment explanation
Indices: 85378840--85379061 Score: 234
Period size: 30 Copynumber: 7.5 Consensus size: 30
85378830 TCGGCTATCG
* *
85378840 ATTATGAAAAGGGAAGGTGATGACCATC-A
1 ATTATGAAAAGGGATGGTGACGACCATCAA
* *
85378869 ATTATGGAAAGGGATGGTGACGACCATCGA
1 ATTATGAAAAGGGATGGTGACGACCATCAA
* * * * *
85378899 ACTATGAAAAGGGATGCT-TCGGCTATCAA
1 ATTATGAAAAGGGATGGTGACGACCATCAA
*
85378928 ATTATGAAAAGGGATGGTGACGACCATCGA
1 ATTATGAAAAGGGATGGTGACGACCATCAA
* * * * * *
85378958 ACTATGAAAAGGTATGCT-TCGGCTATCAA
1 ATTATGAAAAGGGATGGTGACGACCATCAA
*
85378987 ATTATGAAAAGGGATGGTGACGACCATCGA
1 ATTATGAAAAGGGATGGTGACGACCATCAA
** * *
85379017 ACAATGAAAAGGGATAGTGACCACCATCAA
1 ATTATGAAAAGGGATGGTGACGACCATCAA
85379047 ATTATGAAAAGGGAT
1 ATTATGAAAAGGGAT
85379062 AGTTTCAGGT
Statistics
Matches: 153, Mismatches: 37, Indels: 5
0.78 0.19 0.03
Matches are distributed among these distances:
29 70 0.46
30 83 0.54
ACGTcount: A:0.38, C:0.14, G:0.27, T:0.21
Consensus pattern (30 bp):
ATTATGAAAAGGGATGGTGACGACCATCAA
Found at i:85378912 original size:59 final size:59
Alignment explanation
Indices: 85378842--85379061 Score: 275
Period size: 59 Copynumber: 3.7 Consensus size: 59
85378832 GGCTATCGAT
* *
85378842 TATGAAAAGGGAAGGTGAT-GACCATC-AATTATGGAAAGGGATGGTGACGACCATCGAAC
1 TATGAAAAGGGAAGCT--TCGACCATCAAATTATGAAAAGGGATGGTGACGACCATCGAAC
* * *
85378901 TATGAAAAGGGATGCTTCGGCTATCAAATTATGAAAAGGGATGGTGACGACCATCGAAC
1 TATGAAAAGGGAAGCTTCGACCATCAAATTATGAAAAGGGATGGTGACGACCATCGAAC
* * * *
85378960 TATGAAAAGGTATGCTTCGGCTATCAAATTATGAAAAGGGATGGTGACGACCATCGAAC
1 TATGAAAAGGGAAGCTTCGACCATCAAATTATGAAAAGGGATGGTGACGACCATCGAAC
* * *
85379019 AATGAAAAGGGATAG-TGACCACCATCAAATTATGAAAAGGGAT
1 TATGAAAAGGGA-AGCT-TCGACCATCAAATTATGAAAAGGGAT
85379062 AGTTTCAGGT
Statistics
Matches: 144, Mismatches: 13, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
57 1 0.01
58 5 0.03
59 115 0.80
60 23 0.16
ACGTcount: A:0.38, C:0.14, G:0.27, T:0.21
Consensus pattern (59 bp):
TATGAAAAGGGAAGCTTCGACCATCAAATTATGAAAAGGGATGGTGACGACCATCGAAC
Found at i:85379105 original size:30 final size:30
Alignment explanation
Indices: 85379042--85379105 Score: 85
Period size: 30 Copynumber: 2.1 Consensus size: 30
85379032 AGTGACCACC
**
85379042 ATCAAATTATGAAAAGGGATAGTTTCAGGT
1 ATCAAATTATGAAAAGGGATAGCCTCAGGT
*
85379072 ATCAAATTATGAAAATGGATAGCCTC-GGCT
1 ATCAAATTATGAAAAGGGATAGCCTCAGG-T
85379102 ATCA
1 ATCA
85379106 GATAAAGAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
29 2 0.07
30 28 0.93
ACGTcount: A:0.39, C:0.12, G:0.20, T:0.28
Consensus pattern (30 bp):
ATCAAATTATGAAAAGGGATAGCCTCAGGT
Found at i:85384755 original size:52 final size:52
Alignment explanation
Indices: 85384688--85384789 Score: 177
Period size: 52 Copynumber: 2.0 Consensus size: 52
85384678 TGTATAATAA
* *
85384688 AAATTATCAATCGAGCATAAAGATGGCACTGTAAGAAGCTTTGTATGGTCGT
1 AAATTATCAATCGAGCATAAAGATGGCACCGTAAGAAGCTTTGAATGGTCGT
*
85384740 AAATTATCAGTCGAGCATAAAGATGGCACCGTAAGAAGCTTTGAATGGTC
1 AAATTATCAATCGAGCATAAAGATGGCACCGTAAGAAGCTTTGAATGGTC
85384790 AAAAATGCCG
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 47 1.00
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.26
Consensus pattern (52 bp):
AAATTATCAATCGAGCATAAAGATGGCACCGTAAGAAGCTTTGAATGGTCGT
Found at i:85386606 original size:29 final size:30
Alignment explanation
Indices: 85386574--85386647 Score: 105
Period size: 29 Copynumber: 2.5 Consensus size: 30
85386564 CGCTATTGAT
85386574 TATGAAAAGGGATGGTGACAACCATT-AAC
1 TATGAAAAGGGATGGTGACAACCATTGAAC
* * **
85386603 TATGGAAAGGGAAGGTGATGACCATTGAAC
1 TATGAAAAGGGATGGTGACAACCATTGAAC
85386633 TATGAAAAGGGATGG
1 TATGAAAAGGGATGG
85386648 CTTCGACTAT
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
29 22 0.58
30 16 0.42
ACGTcount: A:0.39, C:0.09, G:0.31, T:0.20
Consensus pattern (30 bp):
TATGAAAAGGGATGGTGACAACCATTGAAC
Found at i:85386704 original size:30 final size:30
Alignment explanation
Indices: 85386633--85386765 Score: 142
Period size: 30 Copynumber: 4.5 Consensus size: 30
85386623 ACCATTGAAC
* *
85386633 TATGAAAAGGGATGGCTTCGACTAT-TAAT
1 TATGAAAAGGGATGGCTTCGGCTATCAAAT
* * *
85386662 CATGAAATGGGATGGCTTCAGCTATCAAAT
1 TATGAAAAGGGATGGCTTCGGCTATCAAAT
* *
85386692 TATGAAAAGGGATAGTTTCGGCTATCAAAT
1 TATGAAAAGGGATGGCTTCGGCTATCAAAT
* * * *
85386722 TATGAAAAGGAATAGCCTCGGCTATCGAAT
1 TATGAAAAGGGATGGCTTCGGCTATCAAAT
* *
85386752 AAAGAAAAGGGATG
1 TATGAAAAGGGATG
85386766 TATCAACCAT
Statistics
Matches: 85, Mismatches: 18, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
29 21 0.25
30 64 0.75
ACGTcount: A:0.38, C:0.12, G:0.25, T:0.26
Consensus pattern (30 bp):
TATGAAAAGGGATGGCTTCGGCTATCAAAT
Found at i:85386907 original size:12 final size:12
Alignment explanation
Indices: 85386890--85386918 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
85386880 TCAGGCAGTT
85386890 ACACGGCCTAGC
1 ACACGGCCTAGC
85386902 ACACGGCCTAGC
1 ACACGGCCTAGC
85386914 ACACG
1 ACACG
85386919 AGCGTGTGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.28, C:0.41, G:0.24, T:0.07
Consensus pattern (12 bp):
ACACGGCCTAGC
Found at i:85392257 original size:39 final size:40
Alignment explanation
Indices: 85392214--85392435 Score: 263
Period size: 40 Copynumber: 5.6 Consensus size: 40
85392204 TCCTCGTTCA
* * * * *
85392214 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
85392253 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
85392293 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
85392333 AATGCCTTCGGGACTTAACCCGGATTTAGT-ACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
85392372 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
85392412 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
85392436 CAGCATTCAA
Statistics
Matches: 163, Mismatches: 15, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
38 3 0.02
39 64 0.39
40 88 0.54
41 8 0.05
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:85392315 original size:79 final size:78
Alignment explanation
Indices: 85392212--85392435 Score: 270
Period size: 79 Copynumber: 2.8 Consensus size: 78
85392202 GCTCCTCGTT
* * * *
85392212 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCACACAATGCCTTCGGGACTTAACCCGGA
85392277 TTTAATAACTCGCA
66 TTTAAT-ACTCGCA
* *
85392291 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCACAC-AATGCCTTCGGGACTTAACCCGG
*
85392356 ATTTAGTACTCGCA
65 ATTTAATACTCGCA
* * * * * * * *
85392370 CAAAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAATAACTCA-CACAATGCCTTCGGGACTTAACCCG
85392434 GA
64 GA
85392436 CAGCATTCAA
Statistics
Matches: 125, Mismatches: 17, Indels: 6
0.84 0.11 0.04
Matches are distributed among these distances:
78 3 0.02
79 90 0.72
80 32 0.26
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCACACAATGCCTTCGGGACTTAACCCGGA
TTTAATACTCGCA
Found at i:85392389 original size:119 final size:119
Alignment explanation
Indices: 85392214--85392435 Score: 288
Period size: 119 Copynumber: 1.9 Consensus size: 119
85392204 TCCTCGTTCA
* * * *
85392214 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACTTAACCCGGATT
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACTTAACCCGGATA
* *
85392279 TAATAAC-TCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
66 TAATAACTTAGCAC-AAAGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
85392333 AATGCCTTCGGGACTTAACCCGGATTTAGT-ACTCGCACAAAGGCCTTC-GGATCTTAATCCGGA
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGA-CTTAACCCGGA
* * *
85392396 TATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 TATAATAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
85392436 CAGCATTCAA
Statistics
Matches: 88, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
118 10 0.11
119 73 0.83
120 5 0.06
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACTTAACCCGGATA
TAATAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:85400146 original size:39 final size:40
Alignment explanation
Indices: 85400103--85400325 Score: 263
Period size: 40 Copynumber: 5.6 Consensus size: 40
85400093 TCCTCGTTCA
* * * * *
85400103 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
85400142 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
85400182 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
85400222 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
85400262 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
85400302 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
85400326 CAGCATTCAA
Statistics
Matches: 162, Mismatches: 18, Indels: 7
0.87 0.10 0.04
Matches are distributed among these distances:
39 37 0.23
40 117 0.72
41 8 0.05
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:85402643 original size:68 final size:67
Alignment explanation
Indices: 85402571--85402720 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
85402561 CATCATGTGT
* * * *
85402571 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
85402633 ATGTAG
62 ATGTAG
* * * *
85402639 ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGTATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
85402704 AG
66 AG
85402706 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
85402721 GATAAACTGG
Statistics
Matches: 71, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
64 19 0.27
65 7 0.10
66 5 0.07
67 27 0.38
68 13 0.18
ACGTcount: A:0.33, C:0.17, G:0.28, T:0.22
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:85404694 original size:49 final size:49
Alignment explanation
Indices: 85404617--85404806 Score: 247
Period size: 49 Copynumber: 3.8 Consensus size: 49
85404607 TGGCCGAAGC
*
85404617 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* * * * *
85404666 AATCTGGTACACGTAGTAGCCTGAACTTAGTACTACACATGTGATCACAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAAT
* * *
85404717 TTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* *
85404766 TATCCGGTACACGTAGTA-CCATGCACTTAGTACTACACATG
1 TATCTGGTACACATAGTAGCC-TGCACTTAGTACTACACATG
85404807 ACCTCACAAT
Statistics
Matches: 120, Mismatches: 18, Indels: 6
0.83 0.12 0.04
Matches are distributed among these distances:
48 2 0.02
49 76 0.63
50 2 0.02
51 40 0.33
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
Found at i:85404739 original size:100 final size:100
Alignment explanation
Indices: 85404622--85404806 Score: 327
Period size: 100 Copynumber: 1.9 Consensus size: 100
85404612 GAAGCTATCT
*
85404622 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTA-CC
85404687 -TGAACTTAGTACTACACATGTGATCACAGTTTTCG
65 ATGAACTTAGTACTACACATGTGATCACAGTTTTCG
*
85404722 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTACCA
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTACCA
*
85404787 TGCACTTAGTACTACACATG
66 TGAACTTAGTACTACACATG
85404807 ACCTCACAAT
Statistics
Matches: 81, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
99 2 0.02
100 79 0.98
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.26
Consensus pattern (100 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTACCA
TGAACTTAGTACTACACATGTGATCACAGTTTTCG
Found at i:85406840 original size:30 final size:30
Alignment explanation
Indices: 85406805--85406865 Score: 88
Period size: 30 Copynumber: 2.0 Consensus size: 30
85406795 ACAAGAAAAT
*
85406805 AGAATAAAGAAATCCAAGATAGAA-AAACCC
1 AGAATAAAGAAATCCAAAATA-AAGAAACCC
*
85406835 AGAATAAAGAAATGCAAAATAAAGAAACCC
1 AGAATAAAGAAATCCAAAATAAAGAAACCC
85406865 A
1 A
85406866 AGATACGATA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 2 0.07
30 26 0.93
ACGTcount: A:0.62, C:0.15, G:0.13, T:0.10
Consensus pattern (30 bp):
AGAATAAAGAAATCCAAAATAAAGAAACCC
Found at i:85409926 original size:100 final size:100
Alignment explanation
Indices: 85409809--85409991 Score: 330
Period size: 100 Copynumber: 1.8 Consensus size: 100
85409799 GAAGCTATCT
*
85409809 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATACGACCAATAATCTGGTACACGTAGTAGCC
85409874 TACACTTAGTACTACACACGTGATCACAGTTTTCG
66 TACACTTAGTACTACACACGTGATCACAGTTTTCG
* *
85409909 GGTACGCATAGTAGCCTGCACTTAGTACTACATATACGACCAATTATCTGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATACGACCAATAATCTGGTACACGTAGTAGCC
*
85409974 TGCACTTAGTACTACACA
66 TACACTTAGTACTACACA
85409992 TGACCTCACA
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
100 79 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.26
Consensus pattern (100 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATACGACCAATAATCTGGTACACGTAGTAGCC
TACACTTAGTACTACACACGTGATCACAGTTTTCG
Found at i:85409931 original size:51 final size:49
Alignment explanation
Indices: 85409804--85409993 Score: 245
Period size: 49 Copynumber: 3.8 Consensus size: 49
85409794 TAGCCGAAGC
*
85409804 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* * * * * *
85409853 AATCTGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGATCACAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAAT
* * * * *
85409904 TTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACATATACGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
*
85409953 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATG
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATG
85409994 ACCTCACAAT
Statistics
Matches: 115, Mismatches: 24, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
49 76 0.66
50 2 0.02
51 37 0.32
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
Found at i:85411357 original size:45 final size:45
Alignment explanation
Indices: 85411265--85411561 Score: 275
Period size: 45 Copynumber: 6.7 Consensus size: 45
85411255 TACATCTAAT
* * * * *
85411265 GAGTAAGACAACGAATAAAAGATGTTACGGCA--A-GATTCTATC
1 GAGTAAGACCATGACTAAAAGACGTTATGGCATCACGATTCTATC
* * * * *
85411307 TAGTAATG-CCATGACTAAAAAACATTATGGCTTCATGATTCTATC
1 GAGTAA-GACCATGACTAAAAGACGTTATGGCATCACGATTCTATC
*
85411352 GAGTAAGACCATGACTAAAAGACGTTATGGCATCACGATTCTAAC
1 GAGTAAGACCATGACTAAAAGACGTTATGGCATCACGATTCTATC
* * * *
85411397 GAGTAAGACCATGATTGAAAGACGTTATAGCATCACGATTCTCTC
1 GAGTAAGACCATGACTAAAAGACGTTATGGCATCACGATTCTATC
* ** * *
85411442 GAGTAAGAGCATGGTTGAAAGACGTTATGGCATCACGATTCTATT
1 GAGTAAGACCATGACTAAAAGACGTTATGGCATCACGATTCTATC
* * * *
85411487 GAGTAAGACCAT-AGCTAAAAGACGCTATGGTATCACGAATCAAAT-
1 GAGTAAGACCATGA-CTAAAAGACGTTATGGCATCACGATTC-TATC
* *
85411532 GAATAAGACCAT-AGCTAAAAGACGCTATGG
1 GAGTAAGACCATGA-CTAAAAGACGTTATGG
85411562 TATTACAAAT
Statistics
Matches: 214, Mismatches: 34, Indels: 11
0.83 0.13 0.04
Matches are distributed among these distances:
42 21 0.10
43 1 0.00
44 2 0.01
45 188 0.88
46 2 0.01
ACGTcount: A:0.38, C:0.17, G:0.21, T:0.25
Consensus pattern (45 bp):
GAGTAAGACCATGACTAAAAGACGTTATGGCATCACGATTCTATC
Found at i:85411437 original size:90 final size:90
Alignment explanation
Indices: 85411343--85411604 Score: 251
Period size: 90 Copynumber: 2.9 Consensus size: 90
85411333 ATGGCTTCAT
85411343 GATTCTATCGAGTAAGACCATGACTAAAAGACGTTATGGCATCACGATTCTAACGAGTAAGACCA
1 GATTCTATCGAGTAAGACCATGACTAAAAGACGTTATGGCATCACGATTCTAACGAGTAAGACCA
*
85411408 TGATTGAAAGACGTTATAGCATCAC
66 TGATTGAAAGACGCTATAGCATCAC
* * ** * **
85411433 GATTCTCTCGAGTAAGAGCATGGTTGAAAGACGTTATGGCATCACGATTCTATTGAGTAAGACCA
1 GATTCTATCGAGTAAGACCATGACTAAAAGACGTTATGGCATCACGATTCTAACGAGTAAGACCA
* * * *
85411498 T-AGCTAAAAGACGCTATGGTATCAC
66 TGA-TTGAAAGACGCTATAGCATCAC
* * * * * * * * * * *
85411523 GAATCAAAT-GAATAAGACCAT-AGCTAAAAGACGCTATGGTATTACAAATCAAACGAATAAGGC
1 GATTC-TATCGAGTAAGACCATGA-CTAAAAGACGTTATGGCATCACGATTCTAACGAGTAAGAC
* *
85411586 CATGGTTGAAAGACACTAT
64 CATGATTGAAAGACGCTAT
85411605 GGAAACACGA
Statistics
Matches: 134, Mismatches: 34, Indels: 8
0.76 0.19 0.05
Matches are distributed among these distances:
89 1 0.01
90 132 0.99
91 1 0.01
ACGTcount: A:0.38, C:0.18, G:0.21, T:0.24
Consensus pattern (90 bp):
GATTCTATCGAGTAAGACCATGACTAAAAGACGTTATGGCATCACGATTCTAACGAGTAAGACCA
TGATTGAAAGACGCTATAGCATCAC
Found at i:85411562 original size:45 final size:45
Alignment explanation
Indices: 85411459--85411606 Score: 170
Period size: 45 Copynumber: 3.3 Consensus size: 45
85411449 AGCATGGTTG
* * * * * *
85411459 AAAGACGTTATGGCATCACGATTCTATTGAGTAAGACCATAGCTA
1 AAAGACGCTATGGTATCACGAATCAAATGAATAAGACCATAGCTA
85411504 AAAGACGCTATGGTATCACGAATCAAATGAATAAGACCATAGCTA
1 AAAGACGCTATGGTATCACGAATCAAATGAATAAGACCATAGCTA
* * * * * * *
85411549 AAAGACGCTATGGTATTACAAATCAAACGAATAAGGCCATGGTTG
1 AAAGACGCTATGGTATCACGAATCAAATGAATAAGACCATAGCTA
*
85411594 AAAGACACTATGG
1 AAAGACGCTATGG
85411607 AAACACGATG
Statistics
Matches: 89, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 89 1.00
ACGTcount: A:0.41, C:0.17, G:0.20, T:0.22
Consensus pattern (45 bp):
AAAGACGCTATGGTATCACGAATCAAATGAATAAGACCATAGCTA
Found at i:85411590 original size:135 final size:135
Alignment explanation
Indices: 85411331--85411599 Score: 301
Period size: 135 Copynumber: 2.0 Consensus size: 135
85411321 CTAAAAAACA
* * * * *
85411331 TTATGGCTTCATGATTCTATCGAGTAAGACCATGACTAAAAGACGTTATGGCATCACGATTCTAA
1 TTATGGCATCACGATTCTATCGAGTAAGACCATGACTAAAAGACGCTATGGCATCACGAATCAAA
* * * * * * *** *
85411396 CGAGTAAGACCATGATTGAAAGACGTTATAGCATCACGATTCTCTCGAGTAAGAGCATGGTTGAA
66 CGAATAAGACCATGACTAAAAGACGCTATAGCATCACAAATCAAACGAATAAGAGCATGGTTGAA
85411461 AGACG
131 AGACG
* *
85411466 TTATGGCATCACGATTCTATTGAGTAAGACCAT-AGCTAAAAGACGCTATGGTATCACGAATCAA
1 TTATGGCATCACGATTCTATCGAGTAAGACCATGA-CTAAAAGACGCTATGGCATCACGAATCAA
* * * *
85411530 ATGAATAAGACCAT-AGCTAAAAGACGCTATGGTATTACAAATCAAACGAATAAG-GCCATGGTT
65 ACGAATAAGACCATGA-CTAAAAGACGCTATAGCATCACAAATCAAACGAATAAGAG-CATGGTT
85411593 GAAAGAC
128 GAAAGAC
85411600 ACTATGGAAA
Statistics
Matches: 110, Mismatches: 21, Indels: 6
0.80 0.15 0.04
Matches are distributed among these distances:
134 3 0.03
135 107 0.97
ACGTcount: A:0.37, C:0.17, G:0.21, T:0.25
Consensus pattern (135 bp):
TTATGGCATCACGATTCTATCGAGTAAGACCATGACTAAAAGACGCTATGGCATCACGAATCAAA
CGAATAAGACCATGACTAAAAGACGCTATAGCATCACAAATCAAACGAATAAGAGCATGGTTGAA
AGACG
Found at i:85411666 original size:46 final size:45
Alignment explanation
Indices: 85411585--85411700 Score: 124
Period size: 45 Copynumber: 2.6 Consensus size: 45
85411575 ACGAATAAGG
* * * * * *
85411585 CCATGGTTGAAAGACACTATGGAAACACGATGAGAAATGATTAAAA
1 CCATGGTTGAAAGACACAATGGCAACAAGACGAG-AATAAATAAAA
* *
85411631 CCATGGTTGAAAGACACAATGGCATCAAGACGAGAATAAATAACA
1 CCATGGTTGAAAGACACAATGGCAACAAGACGAGAATAAATAAAA
* * *
85411676 CCATGGCTAAAAGACACCATGGCAA
1 CCATGGTTGAAAGACACAATGGCAA
85411701 ACTCCGATCA
Statistics
Matches: 58, Mismatches: 12, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
45 29 0.50
46 29 0.50
ACGTcount: A:0.45, C:0.18, G:0.21, T:0.16
Consensus pattern (45 bp):
CCATGGTTGAAAGACACAATGGCAACAAGACGAGAATAAATAAAA
Found at i:85417207 original size:45 final size:45
Alignment explanation
Indices: 85417150--85417412 Score: 298
Period size: 45 Copynumber: 5.8 Consensus size: 45
85417140 AAGGTTGTGA
* * *
85417150 CATCATGATTCTAAT-GAGTAAGACCATGAATGAAAGATGTTTTGG
1 CATCATGATTCT-ATCGAGTAAGACCATGACTGAAAGACGTTATGG
* * *
85417195 CACCACGATTCTATCGAGTAAGACCATGACTGAAAGACATTATGG
1 CATCATGATTCTATCGAGTAAGACCATGACTGAAAGACGTTATGG
* *
85417240 CATCATGATTCTAACGAGTAAGACCATGACTGAAATACGTTATGG
1 CATCATGATTCTATCGAGTAAGACCATGACTGAAAGACGTTATGG
* * *
85417285 CATCATAATTTTATCGAGTAAGACCATGATTGAAAGACGTTATGG
1 CATCATGATTCTATCGAGTAAGACCATGACTGAAAGACGTTATGG
* * * *
85417330 CATCATGATTCTATCAAGTAAGACCAT-AGCTAAAAGACGCTATGA
1 CATCATGATTCTATCGAGTAAGACCATGA-CTGAAAGACGTTATGG
* * * * *
85417375 CATCACGAATCAAAT-GAATAAGACCATGATTGAAAGAC
1 CATCATGATTC-TATCGAGTAAGACCATGACTGAAAGAC
85417413 ACCATGGCAC
Statistics
Matches: 184, Mismatches: 30, Indels: 8
0.83 0.14 0.04
Matches are distributed among these distances:
44 3 0.02
45 178 0.97
46 3 0.02
ACGTcount: A:0.38, C:0.17, G:0.19, T:0.26
Consensus pattern (45 bp):
CATCATGATTCTATCGAGTAAGACCATGACTGAAAGACGTTATGG
Found at i:85417397 original size:135 final size:135
Alignment explanation
Indices: 85417165--85417409 Score: 330
Period size: 135 Copynumber: 1.8 Consensus size: 135
85417155 TGATTCTAAT
* * * *
85417165 GAGTAAGACCATGAATGAAAGATGTTTTGGCACCACGATTCTATCGAGTAAGACCATGACTGAAA
1 GAGTAAGACCATGAATGAAAGACGTTATGGCACCACGATTCTATCAAGTAAGACCATGACTAAAA
* * * * * *
85417230 GACATTATGGCATCATGATTCTAACGAGTAAGACCATGACTGAAATACGTTATGGCATCATAATT
66 GACACTATGACATCACGAATCAAACGAATAAGACCATGACTGAAATACGTTATGGCATCATAATT
85417295 TTATC
131 TTATC
* * *
85417300 GAGTAAGACCATGATTGAAAGACGTTATGGCATCATGATTCTATCAAGTAAGACCAT-AGCTAAA
1 GAGTAAGACCATGAATGAAAGACGTTATGGCACCACGATTCTATCAAGTAAGACCATGA-CTAAA
* * *
85417364 AGACGCTATGACATCACGAATCAAATGAATAAGACCATGATTGAAA
65 AGACACTATGACATCACGAATCAAACGAATAAGACCATGACTGAAA
85417410 GACACCATGG
Statistics
Matches: 93, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
134 1 0.01
135 92 0.99
ACGTcount: A:0.38, C:0.17, G:0.20, T:0.25
Consensus pattern (135 bp):
GAGTAAGACCATGAATGAAAGACGTTATGGCACCACGATTCTATCAAGTAAGACCATGACTAAAA
GACACTATGACATCACGAATCAAACGAATAAGACCATGACTGAAATACGTTATGGCATCATAATT
TTATC
Found at i:85418295 original size:26 final size:26
Alignment explanation
Indices: 85418265--85418318 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
85418255 TACGCTAAGT
85418265 AAATGGAATGGTAAGTAAGTAGATGA
1 AAATGGAATGGTAAGTAAGTAGATGA
85418291 AAATGGAATGGTAAGTAAGTAGATGA
1 AAATGGAATGGTAAGTAAGTAGATGA
85418317 AA
1 AA
85418319 TGTTCATCGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.48, C:0.00, G:0.30, T:0.22
Consensus pattern (26 bp):
AAATGGAATGGTAAGTAAGTAGATGA
Found at i:85422099 original size:93 final size:93
Alignment explanation
Indices: 85421940--85422111 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
85421930 CGCCCATAAG
* * *
85421940 CGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
85422005 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
85422033 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
85422098 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
85422112 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:85422108 original size:46 final size:46
Alignment explanation
Indices: 85421933--85422108 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
85421923 TGTAACCCGC
* * * *
85421933 CCATAAGCGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
85421979 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
85422029 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
85422072 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
85422109 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.56
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:85422127 original size:46 final size:46
Alignment explanation
Indices: 85421982--85422120 Score: 144
Period size: 47 Copynumber: 3.0 Consensus size: 46
85421972 TTCGCATCCA
85421982 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATC
* * * * *
85422030 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA--
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATC
85422075 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
85422121 CTAGTGACAT
Statistics
Matches: 75, Mismatches: 9, Indels: 16
0.75 0.09 0.16
Matches are distributed among these distances:
44 8 0.11
45 2 0.03
46 28 0.37
47 30 0.40
48 2 0.03
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
Found at i:85429621 original size:93 final size:93
Alignment explanation
Indices: 85429508--85429679 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
85429498 CGCCCATAAG
* *
85429508 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
85429573 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
85429601 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
85429666 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
85429680 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:85429676 original size:46 final size:46
Alignment explanation
Indices: 85429501--85429676 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
85429491 TGTAACCCGC
* * *
85429501 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
85429547 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
85429597 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
85429640 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
85429677 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:85431097 original size:24 final size:24
Alignment explanation
Indices: 85431048--85431097 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
85431038 CACTACTTAA
* *
85431048 GCCAAATACTTTTTCTCTCTTGTT
1 GCCAAATACTCTTTCTCTCTTCTT
85431072 GCCAAAT-CTCTTTCTCTCTTTCTT
1 GCCAAATACTCTTTCTCTC-TTCTT
85431096 GC
1 GC
85431098 TTGTTGAATC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 10 0.43
24 13 0.57
ACGTcount: A:0.14, C:0.30, G:0.08, T:0.48
Consensus pattern (24 bp):
GCCAAATACTCTTTCTCTCTTCTT
Found at i:85434873 original size:53 final size:54
Alignment explanation
Indices: 85434788--85434994 Score: 211
Period size: 53 Copynumber: 3.8 Consensus size: 54
85434778 TTCCTTTTTA
* * * *
85434788 AACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTCGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * *
85434841 AACTCACCATTGCCATGCCTT-AGCATGGTCTTACATGGGATCTTTGCCTTATAG
1 AACTTACCAATGCCATGCCTTGA-CATGGTCTTACATGGTATCCTTGCCTTATAG
** * ** * * * *
85434895 TAGTTTATCAATGCCATGTATTGACATGGTCTTACATGATTTCCTTGCCTTGTAA
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* *
85434950 AACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
85434995 AAACCCTAAT
Statistics
Matches: 122, Mismatches: 28, Indels: 7
0.78 0.18 0.04
Matches are distributed among these distances:
52 1 0.01
53 44 0.36
54 37 0.30
55 39 0.32
56 1 0.01
ACGTcount: A:0.21, C:0.24, G:0.18, T:0.37
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:85440287 original size:30 final size:30
Alignment explanation
Indices: 85440230--85440288 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
85440220 GCCTTTTGAA
* *
85440230 AATATTTACAAAAAGAGACATCTAATTTTT
1 AATATTTACAAAAAGAGACACCAAATTTTT
*
85440260 AATATTTACAAAAAGTG-CAGCCAAATTTT
1 AATATTTACAAAAAGAGACA-CCAAATTTT
85440289 GAAAATAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 2 0.08
30 23 0.92
ACGTcount: A:0.46, C:0.12, G:0.08, T:0.34
Consensus pattern (30 bp):
AATATTTACAAAAAGAGACACCAAATTTTT
Found at i:85447843 original size:22 final size:22
Alignment explanation
Indices: 85447817--85447860 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
85447807 GAAAATAATC
85447817 AAAATTAATAAAAATTAATTAT
1 AAAATTAATAAAAATTAATTAT
* *
85447839 AAAATTAATTAAAATTCATTAT
1 AAAATTAATAAAAATTAATTAT
85447861 GTTAATATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (22 bp):
AAAATTAATAAAAATTAATTAT
Found at i:85447844 original size:12 final size:11
Alignment explanation
Indices: 85447817--85447852 Score: 56
Period size: 12 Copynumber: 3.3 Consensus size: 11
85447807 GAAAATAATC
85447817 AAAATTAA-TA
1 AAAATTAATTA
85447827 AAAATTAATTA
1 AAAATTAATTA
85447838 TAAAATTAATTA
1 -AAAATTAATTA
85447850 AAA
1 AAA
85447853 TTCATTATGT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
10 8 0.33
11 5 0.21
12 11 0.46
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (11 bp):
AAAATTAATTA
Found at i:85447859 original size:10 final size:10
Alignment explanation
Indices: 85447808--85447859 Score: 52
Period size: 10 Copynumber: 5.1 Consensus size: 10
85447798 AAATCTATTG
*
85447808 AAAA-TAATC
1 AAAATTAATT
*
85447817 AAAATTAATA
1 AAAATTAATT
85447827 AAAATTAATTAT
1 AAAATTAA-T-T
85447839 AAAATTAATT
1 AAAATTAATT
*
85447849 AAAATTCATT
1 AAAATTAATT
85447859 A
1 A
85447860 TGTTAATATT
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
9 4 0.11
10 23 0.62
11 2 0.05
12 8 0.22
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.35
Consensus pattern (10 bp):
AAAATTAATT
Found at i:85450909 original size:79 final size:81
Alignment explanation
Indices: 85450809--85450994 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 81
85450799 GCTACTCGGT
* * *
85450809 CAAATGCCTCCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTA-ACC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGACC
* *
85450871 TGGATTTAGTAAC-TCGCA
64 -GGATATAGTAACTTAGCA
* *
85450889 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGACCGG
*
85450953 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
*
85450969 CAAAAGCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
85450995 TATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
78 3 0.03
79 46 0.51
80 31 0.34
81 11 0.12
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGACCGG
ATATAGTAACTTAGCA
Found at i:85450934 original size:39 final size:41
Alignment explanation
Indices: 85450809--85450994 Score: 213
Period size: 40 Copynumber: 4.6 Consensus size: 41
85450799 GCTACTCGGT
* * *
85450809 CAAATGCCTCCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCA
* * *
85450849 CAAATGCCTTCGGGACTTAACCTGG-ATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCA
*
85450889 CCAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCA
* * *
85450928 CAAATGCCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAATATAGTAAC-TCGCA
*
85450969 CAAAAGCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
85450995 TATCATTCGA
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 64 0.52
41 23 0.19
42 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCA
Found at i:85460558 original size:42 final size:42
Alignment explanation
Indices: 85460511--85460632 Score: 154
Period size: 43 Copynumber: 2.9 Consensus size: 42
85460501 TAGGGTTAGT
*
85460511 TGAGATTACGTGTAAGACCATATTTGGGATATGGCATCGATA
1 TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATA
* * * *
85460553 TGAGATTTCGTGTAAGACCATAGCTAGGCTATTGGCATCGATA
1 TGAGATTACGTGTAAGACCATATCTGGGATA-TGGCATCGATA
** * *
85460596 TGAGATCCCATGTATGACCATATCTGGGATATGGCAT
1 TGAGATTACGTGTAAGACCATATCTGGGATATGGCAT
85460633 TGGTATGGTA
Statistics
Matches: 67, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
42 32 0.48
43 35 0.52
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (42 bp):
TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATA
Found at i:85464000 original size:45 final size:45
Alignment explanation
Indices: 85463900--85464026 Score: 138
Period size: 45 Copynumber: 2.9 Consensus size: 45
85463890 TTTTCTCAAA
* *
85463900 TCACCGGCATT-TCGCCTGTTAGGCTCG-AGGCCCG-ATATCAGT
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATATCAGT
85463942 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGT-A-T
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATA-TCAGT
** * * *
85463986 CTCACCGGCATTATAGTTTTCTAAGCTCAAAGGCCCGAATA
1 -TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATA
85464027 ATCAAGTCAA
Statistics
Matches: 73, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
42 11 0.15
43 14 0.19
44 8 0.11
45 39 0.53
46 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATATCAGT
Found at i:85464404 original size:43 final size:43
Alignment explanation
Indices: 85464343--85464510 Score: 300
Period size: 43 Copynumber: 3.9 Consensus size: 43
85464333 ACATATCATT
* *
85464343 TCACCGGCATTACGCCTGCTAGGCACGAAGGCCCGAATACACA
1 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
*
85464386 TCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACA
1 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
85464429 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
1 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
*
85464472 TCACCGGCACTAAGCCTACTAGGCACGAAGGCCCGAATA
1 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATA
85464511 TAATACCAGC
Statistics
Matches: 120, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 120 1.00
ACGTcount: A:0.30, C:0.35, G:0.24, T:0.12
Consensus pattern (43 bp):
TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
Found at i:85464575 original size:37 final size:38
Alignment explanation
Indices: 85464503--85464585 Score: 96
Period size: 37 Copynumber: 2.2 Consensus size: 38
85464493 GGCACGAAGG
* * *
85464503 CCCGAATATAATACCAGCACTAGGCCTACGGGATTTAT
1 CCCGAATATAATACCAGCACGAAGCCTACGAGATTTAT
* * *
85464541 CCCGGATATAATA-CAGCACGAAGCCTGCGAGATTTAA
1 CCCGAATATAATACCAGCACGAAGCCTACGAGATTTAT
*
85464578 CCCAAATA
1 CCCGAATA
85464586 CACATCAAAT
Statistics
Matches: 37, Mismatches: 8, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
37 25 0.68
38 12 0.32
ACGTcount: A:0.35, C:0.27, G:0.18, T:0.20
Consensus pattern (38 bp):
CCCGAATATAATACCAGCACGAAGCCTACGAGATTTAT
Found at i:85468420 original size:45 final size:45
Alignment explanation
Indices: 85468326--85468413 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
85468316 CGACATTTCA
*
85468326 CCTGTTAGGCTCG-AGGCCCG-ATATCAGTTCACCGGCATTATAG
1 CCTGCTAGGCTCGAAGGCCCGAATATCAGTTCACCGGCATTATAG
85468369 CCTGCTAGGCTCGAAGGCCCGAATAGT-A-TCTCACCGGCATTATAG
1 CCTGCTAGGCTCGAAGGCCCGAATA-TCAGT-TCACCGGCATTATAG
85468414 TTTGCTAAGC
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
43 12 0.30
44 8 0.20
45 19 0.47
46 1 0.03
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.24
Consensus pattern (45 bp):
CCTGCTAGGCTCGAAGGCCCGAATATCAGTTCACCGGCATTATAG
Found at i:85468814 original size:43 final size:43
Alignment explanation
Indices: 85468766--85468877 Score: 179
Period size: 43 Copynumber: 2.6 Consensus size: 43
85468756 CCGGCATTAC
85468766 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACAAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACAAA
* * * *
85468809 GCCTGCTAGGTACGAAGGCCCAAATACACATCACCGGCACTAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACAAA
*
85468852 GCCTGCTAGGCACAAAGGCCCGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
85468878 TAATACTAGC
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 62 1.00
ACGTcount: A:0.33, C:0.33, G:0.22, T:0.12
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACAAA
Found at i:85468943 original size:38 final size:38
Alignment explanation
Indices: 85468875--85468949 Score: 96
Period size: 38 Copynumber: 2.0 Consensus size: 38
85468865 AAAGGCCCGA
* * *
85468875 ATATAATACTAGCACTAGGCCTACGAGATTTATCCCAG
1 ATATAATACCAGCACGAGGCCTACGAGATTTAACCCAG
* * *
85468913 ATATAATACCAGCACGATGCCTGCGGGATTTAACCCA
1 ATATAATACCAGCACGAGGCCTACGAGATTTAACCCA
85468950 AATACACATC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
38 31 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.24
Consensus pattern (38 bp):
ATATAATACCAGCACGAGGCCTACGAGATTTAACCCAG
Found at i:85473244 original size:37 final size:37
Alignment explanation
Indices: 85473174--85473354 Score: 274
Period size: 37 Copynumber: 4.9 Consensus size: 37
85473164 GCTCAGACGA
* * *
85473174 AATCTCCACACGAAGTTATC-GGTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
85473210 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
* *
85473247 ACTCTCCACATGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
85473284 ACTCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
* * *
85473321 AATCTCCACACGTAGTAATTGGGTCTCACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
85473355 ATATATTTCC
Statistics
Matches: 134, Mismatches: 10, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
36 18 0.13
37 116 0.87
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:85473660 original size:47 final size:47
Alignment explanation
Indices: 85473587--85473792 Score: 322
Period size: 47 Copynumber: 4.4 Consensus size: 47
85473577 TTTATCATTT
* * * *
85473587 TATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCACACA
1 TATGCATGTTCACATTCATCACATAGGCCATTCGGCCTTATCACATA
** * *
85473634 TATGCATACTCACATTCATCAGATTGGCCATTCGGCCTTATCACATA
1 TATGCATGTTCACATTCATCACATAGGCCATTCGGCCTTATCACATA
*
85473681 TATGCATGTTCACATTCATCACATAGGTCATTCGGCCTTATCACATA
1 TATGCATGTTCACATTCATCACATAGGCCATTCGGCCTTATCACATA
85473728 TATGCATGTTCACATTCATCACATAGGCCATTCGGCCTTATCACATA
1 TATGCATGTTCACATTCATCACATAGGCCATTCGGCCTTATCACATA
*
85473775 TATGCATGTTCATATTCA
1 TATGCATGTTCACATTCA
85473793 CCACTGTAAC
Statistics
Matches: 146, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 146 1.00
ACGTcount: A:0.27, C:0.27, G:0.13, T:0.33
Consensus pattern (47 bp):
TATGCATGTTCACATTCATCACATAGGCCATTCGGCCTTATCACATA
Found at i:85473726 original size:22 final size:22
Alignment explanation
Indices: 85473698--85473774 Score: 66
Period size: 22 Copynumber: 3.4 Consensus size: 22
85473688 GTTCACATTC
85473698 ATCACATAGGTCATTCGGCCTT
1 ATCACATAGGTCATTCGGCCTT
** * *
85473720 ATCACATATATGCATGTTC-ACATT
1 ATCACATAGGT-CA--TTCGGCCTT
*
85473744 CATCACATAGGCCATTCGGCCTT
1 -ATCACATAGGTCATTCGGCCTT
85473767 ATCACATA
1 ATCACATA
85473775 TATGCATGTT
Statistics
Matches: 41, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
22 20 0.49
23 5 0.12
24 5 0.12
25 11 0.27
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.31
Consensus pattern (22 bp):
ATCACATAGGTCATTCGGCCTT
Found at i:85475176 original size:27 final size:27
Alignment explanation
Indices: 85475146--85475323 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 27
85475136 ATATTGAGCC
* * *
85475146 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACACAATCAAAT
* **
85475173 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACACAATCAAAT
* * * *
85475200 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACACAATCA-AAT
** *** *
85475228 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACACAATCAAAT
* * **
85475255 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAAAT
* * * *
85475282 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTACACAATCAAAT
85475309 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
85475324 GTACAATTTA
Statistics
Matches: 123, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 23 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACACAATCAAAT
Found at i:85475239 original size:55 final size:55
Alignment explanation
Indices: 85475146--85475323 Score: 204
Period size: 54 Copynumber: 3.3 Consensus size: 55
85475136 ATATTGAGCC
* * *
85475146 CGCACACTCAGTGCTATACA-A-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAT-CATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
85475200 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * *
85475255 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
85475309 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
85475324 GTACAATTTA
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 56 0.54
55 45 0.43
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:85475285 original size:82 final size:81
Alignment explanation
Indices: 85475167--85475322 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
85475157 TGCTATACAA
* * *
85475167 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGCA
85475232 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
85475249 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCA
85475313 CACTTAGTGC
65 CACTTAGTGC
85475323 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:85483250 original size:27 final size:27
Alignment explanation
Indices: 85483212--85483386 Score: 140
Period size: 27 Copynumber: 6.5 Consensus size: 27
85483202 ATTGAGCCGC
* * *
85483212 CACACTCAGTGCTAAACAATCAACTCG
1 CACACTTAGTGCTACATAATCAACTCG
* * *
85483239 CACACTTAGTGCCACGTAATCAAATCG
1 CACACTTAGTGCTACATAATCAACTCG
* *
85483266 CACACTTAGTGCTACATAGTTAGACTCG
1 CACACTTAGTGCTACATAATCA-ACTCG
** ** *
85483294 CACACTTAGT-CCGCATGGTCAATTCG
1 CACACTTAGTGCTACATAATCAACTCG
* **
85483320 CACACTTAGTGC-ATCATATTCATTTCG
1 CACACTTAGTGCTA-CATAATCAACTCG
* *
85483347 CACACTTAGTGCAACATAGTCGAA-TCG
1 CACACTTAGTGCTACATAATC-AACTCG
85483374 CACACTTAGTGCT
1 CACACTTAGTGCT
85483387 GTACAATTTA
Statistics
Matches: 120, Mismatches: 23, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
26 14 0.12
27 90 0.75
28 16 0.13
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CACACTTAGTGCTACATAATCAACTCG
Found at i:85483321 original size:54 final size:54
Alignment explanation
Indices: 85483231--85483386 Score: 176
Period size: 54 Copynumber: 2.9 Consensus size: 54
85483221 TGCTAAACAA
* *
85483231 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTA-CATAGT
1 TCAACTCGCACACTTAGTGCCACATAGTC-AATCGCACACTTAGTGCTATCATA-T
* *
85483286 T-AGACTCGCACACTTAGT-CCGCATGGTCAATTCGCACACTTAGTGC-ATCATAT
1 TCA-ACTCGCACACTTAGTGCCACATAGTCAA-TCGCACACTTAGTGCTATCATAT
** *
85483339 TCATTTCGCACACTTAGTGCAACATAGTCGAATCGCACACTTAGTGCT
1 TCAACTCGCACACTTAGTGCCACATAGTC-AATCGCACACTTAGTGCT
85483387 GTACAATTTA
Statistics
Matches: 85, Mismatches: 9, Indels: 14
0.79 0.08 0.13
Matches are distributed among these distances:
53 18 0.21
54 49 0.58
55 18 0.21
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (54 bp):
TCAACTCGCACACTTAGTGCCACATAGTCAATCGCACACTTAGTGCTATCATAT
Found at i:85489342 original size:40 final size:38
Alignment explanation
Indices: 85489291--85489742 Score: 254
Period size: 40 Copynumber: 11.8 Consensus size: 38
85489281 GCCCGGATAA
85489291 ATGCTCTTTGGGACTTAGTCCCGATACATCACTAGCACG
1 ATGCTC-TTGGGACTTAGTCCCGATACATCACTAGCACG
* *
85489330 ATGTCTTCTTGGGA-TTA-TAGCCGATATATCACTAGCACG
1 ATG-C-TCTTGGGACTTAGT-CCCGATACATCACTAGCACG
85489369 AAT-CTCTTCGGGACTTAG---CGATACATCACTAGC-CG
1 -ATGCTCTT-GGGACTTAGTCCCGATACATCACTAGCACG
* * *
85489404 AAGCTCTTGGGATTTAG-CCCAGATATA-CACT-GCAACG
1 ATGCTCTTGGGACTTAGTCCC-GATACATCACTAGC-ACG
*
85489441 AATG-TCTTCGGGACTTAGTCGC-AGTACATCACTAGCACG
1 -ATGCTCTT-GGGACTTAGTCCCGA-TACATCACTAGCACG
* * * *
85489480 AATGC-CTTCGGATTTAG-CCCGGATA-TTCACTAGCACTA
1 -ATGCTCTTGGGACTTAGTCCC-GATACATCACTAGCAC-G
*
85489518 AT-CTCTTCCGGACTTAGT-CCG-TACATCATCTAGCACG
1 ATGCTCTT-GGGACTTAGTCCCGATACATCA-CTAGCACG
* *
85489555 AATGCTCTTCGGGATTTAG-CCCGGATATATCACTAGCACG
1 -ATGCTCTT-GGGACTTAGTCCC-GATACATCACTAGCACG
* *
85489595 AATGCTCTTCGGGATTTA-TCCCGGATATATCACTAGCACG
1 -ATGCTCTT-GGGACTTAGTCCC-GATACATCACTAGCACG
* * * *
85489635 AAGCTC-TCGGA-TTAG-CCCGGGATATATCGCTAGCACG
1 ATGCTCTTGGGACTTAGTCCC--GATACATCACTAGCACG
* *
85489672 AATGCTCTTCGGGATTTAG-CCCAGATATATCACTAGCACG
1 -ATGCTCTT-GGGACTTAGTCCC-GATACATCACTAGCACG
* * *
85489712 AATGCTCTTAGGATTTA--CCCGATATATCACT
1 -ATGCTCTTGGGACTTAGTCCCGATACATCACT
85489743 CTCAATTCTC
Statistics
Matches: 344, Mismatches: 29, Indels: 82
0.76 0.06 0.18
Matches are distributed among these distances:
34 9 0.03
35 9 0.03
36 28 0.08
37 68 0.20
38 56 0.16
39 72 0.21
40 87 0.25
41 15 0.04
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (38 bp):
ATGCTCTTGGGACTTAGTCCCGATACATCACTAGCACG
Found at i:85489647 original size:77 final size:79
Alignment explanation
Indices: 85489290--85489742 Score: 524
Period size: 77 Copynumber: 5.9 Consensus size: 79
85489280 AGCCCGGATA
* *
85489290 AATGCTCTTTGGGACTTAGTCCCGATACATCACTAGCACG-ATGTCTTCTTGGGATTATAG-CC-
1 AATGCTCTTCGGGACTTAGTCCCGATACATCACTAGCACGAATG-C-TCTTCGGATT-TAGCCCG
85489352 GATATATCACTAGCACG
63 GATATATCACTAGCACG
* *
85489369 AAT-CTCTTCGGGACTTAG---CGATACATCACTAGC-CGAA-GCTCTTGGGATTTAGCCCAGAT
1 AATGCTCTTCGGGACTTAGTCCCGATACATCACTAGCACGAATGCTCTTCGGATTTAGCCCGGAT
85489428 ATA-CACT-GCAACG
66 ATATCACTAGC-ACG
*
85489441 AATG-TCTTCGGGACTTAGTCGC-AGTACATCACTAGCACGAATGC-CTTCGGATTTAGCCCGGA
1 AATGCTCTTCGGGACTTAGTCCCGA-TACATCACTAGCACGAATGCTCTTCGGATTTAGCCCGGA
*
85489503 TAT-TCACTAGCACT
65 TATATCACTAGCACG
*
85489517 AAT-CTCTTCCGGACTTAGT-CCG-TACATCATCTAGCACGAATGCTCTTCGGGATTTAGCCCGG
1 AATGCTCTTCGGGACTTAGTCCCGATACATCA-CTAGCACGAATGCTCTTC-GGATTTAGCCCGG
85489579 ATATATCACTAGCACG
64 ATATATCACTAGCACG
* *
85489595 AATGCTCTTCGGGATTTA-TCCCGGATATATCACTAGCACGAA-GCTC-TCGGA-TTAGCCCGGG
1 AATGCTCTTCGGGACTTAGTCCC-GATACATCACTAGCACGAATGCTCTTCGGATTTAGCCC-GG
*
85489656 ATATATCGCTAGCACG
64 ATATATCACTAGCACG
* * *
85489672 AATGCTCTTCGGGATTTAG-CCCAGATATATCACTAGCACGAATGCTCTTAGGATTTA-CCC-GA
1 AATGCTCTTCGGGACTTAGTCCC-GATACATCACTAGCACGAATGCTCTTCGGATTTAGCCCGGA
85489734 TATATCACT
65 TATATCACT
85489743 CTCAATTCTC
Statistics
Matches: 332, Mismatches: 14, Indels: 58
0.82 0.03 0.14
Matches are distributed among these distances:
71 5 0.02
72 36 0.11
73 7 0.02
74 11 0.03
75 43 0.13
76 57 0.17
77 91 0.27
78 34 0.10
79 28 0.08
80 14 0.04
81 6 0.02
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (79 bp):
AATGCTCTTCGGGACTTAGTCCCGATACATCACTAGCACGAATGCTCTTCGGATTTAGCCCGGAT
ATATCACTAGCACG
Found at i:85489673 original size:117 final size:113
Alignment explanation
Indices: 85489301--85489742 Score: 462
Period size: 117 Copynumber: 3.9 Consensus size: 113
85489291 ATGCTCTTTG
85489301 GGACTTAGTCCCGATACATCACTAGCACG-ATGTCTTCTTGGGATTATAGCC-GATATATCACTA
1 GGACTTAG-CCCGATACATCACTAGCACGAATGTCTTC--GGGATT-TAGCCGGATATATCACTA
* * * *
85489364 GCACGAAT-CTCTTCGGGACTTA-GCGATACATCACTAGC-CGAAGCTCTTG
62 GCACGAATGCTCTTCGGGATTTACCCGATATATCACTAGCACGAAGCTCTTC
* * * * * *
85489413 GGATTTAGCCCAGATATA-CACT-GCAACGAATGTCTTCGGGACTTAGTCGCAGTACATCACTAG
1 GGACTTAGCCC-GATACATCACTAGC-ACGAATGTCTTCGGGATTTAGCCGGA-TATATCACTAG
* *
85489476 CACGAATGC-CTTC-GGATTTAGCCCGGATAT-TCACTAGCACTAATCTCTTCC
63 CACGAATGCTCTTCGGGATTTA-CCC-GATATATCACTAGCACGAAGCTCTT-C
*
85489527 GGACTTAGTCCG-TACATCATCTAGCACGAATGCTCTTCGGGATTTAGCCCGGATATATCACTAG
1 GGACTTAGCCCGATACATCA-CTAGCACGAATG-TCTTCGGGATTTAG-CCGGATATATCACTAG
85489591 CACGAATGCTCTTCGGGATTTATCCCGGATATATCACTAGCACGAAGCTC-TC
63 CACGAATGCTCTTCGGGATTTA-CCC-GATATATCACTAGCACGAAGCTCTTC
* * *
85489643 GGA-TTAGCCCGGGATATATCGCTAGCACGAATGCTCTTCGGGATTTAGCCCAGATATATCACTA
1 GGACTTAGCCC--GATACATCACTAGCACGAATG-TCTTCGGGATTTAG-CCGGATATATCACTA
*
85489707 GCACGAATGCTCTT-AGGATTTACCCGATATATCACT
62 GCACGAATGCTCTTCGGGATTTACCCGATATATCACT
85489743 CTCAATTCTC
Statistics
Matches: 281, Mismatches: 27, Indels: 42
0.80 0.08 0.12
Matches are distributed among these distances:
109 4 0.01
110 14 0.05
111 31 0.11
112 33 0.12
113 15 0.05
114 29 0.10
115 43 0.15
116 18 0.06
117 74 0.26
118 20 0.07
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (113 bp):
GGACTTAGCCCGATACATCACTAGCACGAATGTCTTCGGGATTTAGCCGGATATATCACTAGCAC
GAATGCTCTTCGGGATTTACCCGATATATCACTAGCACGAAGCTCTTC
Found at i:85491032 original size:37 final size:37
Alignment explanation
Indices: 85490989--85491194 Score: 326
Period size: 37 Copynumber: 5.6 Consensus size: 37
85490979 GCTCAGACGA
* * * *
85490989 AATCTCCACACGAAGTTATCGGGTCTTACCCAGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
85491026 AATCTCCACACGTAGTCATC-GGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
* *
85491062 ACTCTCCACATGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
85491099 ACTCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
85491136 AATCTCCACACGTAGTCATCGGGTCTTA-CCGCGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCG-GACAT
85491173 AATCTCCACACGTAGTCATCGG
1 AATCTCCACACGTAGTCATCGG
85491195 TCTAATCCGG
Statistics
Matches: 159, Mismatches: 8, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
36 35 0.22
37 124 0.78
ACGTcount: A:0.25, C:0.33, G:0.18, T:0.24
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:85491140 original size:110 final size:111
Alignment explanation
Indices: 85490991--85491194 Score: 331
Period size: 110 Copynumber: 1.8 Consensus size: 111
85490981 TCAGACGAAA
*
85490991 TCTCCACACGAAGTTATCGGGTCTTACCCAGACAAAATCTCCACACGTAGTCATC-GGTCTTACC
1 TCTCCACACGAAGTCATCGGGTCTTACCCAGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
* *
85491055 -CGGACATACTCTCCACATGTAGTCATCGGGTCTTACCCGGACATAC
66 GC-GACATAATCTCCACACGTAGTCATCGGGTCTTACCCGGACATAC
* * *
85491101 TCTCCACACGTAGTCATCGGGTCTTACCCGGACATAATCTCCACACGTAGTCATCGGGTCTTACC
1 TCTCCACACGAAGTCATCGGGTCTTACCCAGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
85491166 GCGACATAATCTCCACACGTAGTCATCGG
66 GCGACATAATCTCCACACGTAGTCATCGG
85491195 TCTAATCCGG
Statistics
Matches: 86, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
110 51 0.59
111 34 0.40
112 1 0.01
ACGTcount: A:0.25, C:0.33, G:0.18, T:0.25
Consensus pattern (111 bp):
TCTCCACACGAAGTCATCGGGTCTTACCCAGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
GCGACATAATCTCCACACGTAGTCATCGGGTCTTACCCGGACATAC
Found at i:85491464 original size:46 final size:46
Alignment explanation
Indices: 85491403--85491719 Score: 331
Period size: 47 Copynumber: 7.1 Consensus size: 46
85491393 ATATATATAT
* * *
85491403 TCACATTGACCATTCGGCTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCTTATCACATATATGCATGTTCACATTCA
* * * **
85491449 CCACATTGGCCATTCGGCCTTATCACACATATGAATACTCACA-TCA
1 TCACATTGGCCATTCGG-CTTATCACATATATGCATGTTCACATTCA
*
85491495 T-ACA--GAG-CATTCGGCCTATCACATATATGCATGTTCACATTCA
1 TCACATTG-GCCATTCGGCTTATCACATATATGCATGTTCACATTCA
85491538 TCACA-T-G-CA-T-GGCTTAT--CATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCTTATCACATATATGCATGTTCACATTCA
* ** *
85491577 TCACATAGGCCATTCCCCTTATCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCTTATCACATATATGCATGTTCACATTCA
* *
85491623 -CCCATT-GCCA-TCGGCTTTATCACACATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGC-TTATCACATATATGCATGTTCACATTCA
* **
85491667 TCACATTGGCCATTCGGCCTTATCACATATATACACATTCACATTCA
1 TCACATTGGCCATTCGG-CTTATCACATATATGCATGTTCACATTCA
85491714 TCACAT
1 TCACAT
85491720 AAAAATCCTA
Statistics
Matches: 224, Mismatches: 30, Indels: 33
0.78 0.10 0.11
Matches are distributed among these distances:
39 27 0.12
41 7 0.03
42 23 0.10
43 19 0.08
44 39 0.17
45 12 0.05
46 43 0.19
47 53 0.24
48 1 0.00
ACGTcount: A:0.29, C:0.28, G:0.11, T:0.32
Consensus pattern (46 bp):
TCACATTGGCCATTCGGCTTATCACATATATGCATGTTCACATTCA
Found at i:85491570 original size:128 final size:129
Alignment explanation
Indices: 85491427--85491672 Score: 318
Period size: 128 Copynumber: 1.9 Consensus size: 129
85491417 CGGCTTACCA
* * *
85491427 CATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCACACATATGAATACTCACA
1 CATATATGCATGTTCACATTCACCACATAGGCCATTC-CCCTTATCACACATATGAATACTCACA
* *
85491492 -TCATACAGAG-CATTCGGC-CTATCACATATATGCATGTTCACATTCATCACATGCATGGCTTA
65 TTCACACAGAGCCA-TCGGCTCTATCACACATATGCATGTTCACATTCATCACATGCATGGCTTA
85491554 T
129 T
* * * ** *
85491555 CATATATGCATGTTCACATTCATCACATAGGCCATTCCCCTTATCACATATATGCATGTTCATAT
1 CATATATGCATGTTCACATTCACCACATAGGCCATTCCCCTTATCACACATATGAATACTCACAT
* ** *
85491620 TCACCCATTGCCATCGGCTTTATCACACATATGCATGTTCACATTCATCACAT
66 TCACACAGAGCCATCGGCTCTATCACACATATGCATGTTCACATTCATCACAT
85491673 TGGCCATTCG
Statistics
Matches: 100, Mismatches: 15, Indels: 5
0.83 0.12 0.04
Matches are distributed among these distances:
127 21 0.21
128 45 0.45
129 34 0.34
ACGTcount: A:0.29, C:0.28, G:0.11, T:0.33
Consensus pattern (129 bp):
CATATATGCATGTTCACATTCACCACATAGGCCATTCCCCTTATCACACATATGAATACTCACAT
TCACACAGAGCCATCGGCTCTATCACACATATGCATGTTCACATTCATCACATGCATGGCTTAT
Found at i:85495825 original size:27 final size:27
Alignment explanation
Indices: 85495787--85495838 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
85495777 CCAGCATGAT
85495787 TGCTCTTCGGGACCTAGCCCGGATAAA
1 TGCTCTTCGGGACCTAGCCCGGATAAA
* * *
85495814 TGCTCTTTGGGACTTAGTCCGGATA
1 TGCTCTTCGGGACCTAGCCCGGATA
85495839 CATCACTAGC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.19, C:0.25, G:0.27, T:0.29
Consensus pattern (27 bp):
TGCTCTTCGGGACCTAGCCCGGATAAA
Found at i:85495859 original size:40 final size:40
Alignment explanation
Indices: 85495812--85496285 Score: 759
Period size: 40 Copynumber: 11.8 Consensus size: 40
85495802 AGCCCGGATA
* * * *
85495812 AATGCTCTTTGGGACTTAGTCCGGATACATCACTAGCACG
1 AATGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACG
85495852 AATGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACG
1 AATGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACG
* * *
85495892 AATGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACG
1 AATGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACG
* *
85495932 AATGCTCTTTGGGATTTAGCCCAGATATATCACTAGCACG
1 AATGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACG
* * *
85495972 AATGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACG
1 AATGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACG
*
85496012 AATGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACT
1 AATGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACG
* * *
85496052 AATGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACG
1 AATGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACG
85496092 AATGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACG
1 AATGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACG
*
85496132 AATGCTCTTCGGGATTTATCCCGGATATATCACTAGCACG
1 AATGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACG
* *
85496172 AATGCTCTTCGGGACTTAGCCCGGATATATCGCTAGCACG
1 AATGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACG
*
85496212 AATGCTCTTCGGGATTTAGCCCAGATATATCACTAGCACG
1 AATGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACG
*
85496252 AATGCTCTTCAGGATTTAGCCCGGATATATCACT
1 AATGCTCTTCGGGATTTAGCCCGGATATATCACT
85496286 CTCAATTCTC
Statistics
Matches: 397, Mismatches: 37, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 397 1.00
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
AATGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACG
Found at i:85497773 original size:37 final size:37
Alignment explanation
Indices: 85497555--85497765 Score: 359
Period size: 37 Copynumber: 5.7 Consensus size: 37
85497545 GCTCAGACGA
* * * *
85497555 AATCTCCACACGAAGTTATCGGGTCTTACCCAGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
85497592 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
* *
85497629 ACTCTCCACATGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
85497666 ACTCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
85497703 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
85497740 AATCTCCACACGTAGTCATCGGGTCT
1 AATCTCCACACGTAGTCATCGGGTCT
85497766 AATCCGGAAT
Statistics
Matches: 166, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 166 1.00
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.25
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:85498310 original size:47 final size:47
Alignment explanation
Indices: 85497978--85498289 Score: 484
Period size: 47 Copynumber: 6.7 Consensus size: 47
85497968 TATATATATT
* * * *
85497978 TCACATTGACCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * * **
85498025 CCACATTGGCCATTCGGCCTTATCACACATATGAATACTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
85498072 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
85498119 TCACATAGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
85498166 TCACA-TGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
85498212 -CACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
85498258 TCACATTGGCCATTCGGCTTTATCACATATAT
1 TCACATTGGCCATTCGGCCTTATCACATATAT
85498290 ACACATTCGT
Statistics
Matches: 241, Mismatches: 22, Indels: 4
0.90 0.08 0.01
Matches are distributed among these distances:
45 4 0.02
46 77 0.32
47 160 0.66
ACGTcount: A:0.27, C:0.28, G:0.12, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:85509835 original size:24 final size:26
Alignment explanation
Indices: 85509803--85509851 Score: 75
Period size: 24 Copynumber: 1.9 Consensus size: 26
85509793 AGTTCATGTA
85509803 ATATTAAAGC-ATTTAA-ATACAATT
1 ATATTAAAGCTATTTAACATACAATT
85509827 ATATTAAAGCTTATTTAACATACAA
1 ATATTAAAGC-TATTTAACATACAA
85509852 ACCTACCTCG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 10 0.45
26 6 0.27
27 6 0.27
ACGTcount: A:0.49, C:0.10, G:0.04, T:0.37
Consensus pattern (26 bp):
ATATTAAAGCTATTTAACATACAATT
Found at i:85517179 original size:40 final size:40
Alignment explanation
Indices: 85517109--85517285 Score: 200
Period size: 40 Copynumber: 4.5 Consensus size: 40
85517099 ACCCAAGTAT
*
85517109 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
*
85517148 CTTCGGGTCTTAGCCCGAATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * * *
85517188 CTTCGGGTCTTAGCCCGCATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* * *
85517228 CATT-GGGACATAGCCCGGATATAGCAACTCGCACGAATGC
1 C-TTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
85517268 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
85517286 TTATCATCCG
Statistics
Matches: 115, Mismatches: 17, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
38 1 0.01
39 15 0.13
40 95 0.83
41 4 0.03
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:85524274 original size:40 final size:40
Alignment explanation
Indices: 85524199--85524363 Score: 192
Period size: 40 Copynumber: 4.2 Consensus size: 40
85524189 ACCCAAGTAT
*
85524199 CTTCGGGAT-TTAG-CCAGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCAGATATAGCAACTCGCACAAATGC
* *
85524238 CTTCGGGTCTTAGCCCAAATATAGCAACTCGTACAAATGC
1 CTTCGGGTCTTAGCCCAGATATAGCAACTCGCACAAATGC
* * * *
85524278 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCAGATAT-AGCAACTCGCACAAATGC
* * * *
85524318 CTTCGGGACATAGCCCGGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCAGATATAGCAACTCGCACAAATGC
85524358 CTTCGG
1 CTTCGG
85524364 ATATTAGTCC
Statistics
Matches: 107, Mismatches: 15, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
38 1 0.01
39 13 0.12
40 91 0.85
41 2 0.02
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCAGATATAGCAACTCGCACAAATGC
Found at i:85526333 original size:16 final size:15
Alignment explanation
Indices: 85526297--85526334 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 15
85526287 CAAACTTTTG
85526297 GCTTTTCAGCATTTC
1 GCTTTTCAGCATTTC
85526312 GACTTTTCAGCATTTC
1 G-CTTTTCAGCATTTC
85526328 AGCTTTT
1 -GCTTTT
85526335 GTCGATCTAC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 1 0.05
16 19 0.90
17 1 0.05
ACGTcount: A:0.16, C:0.24, G:0.13, T:0.47
Consensus pattern (15 bp):
GCTTTTCAGCATTTC
Found at i:85533708 original size:28 final size:29
Alignment explanation
Indices: 85533668--85533778 Score: 120
Period size: 29 Copynumber: 3.9 Consensus size: 29
85533658 TGTATCTGGA
* *
85533668 CCATTAAGCCC-AATCATATTCATATGGC
1 CCATTAGGCCCAAATCACATTCATATGGC
*
85533696 CCATTAGGCCCAAATCACCTGT-ATATGGC
1 CCATTAGGCCCAAATCACAT-TCATATGGC
*
85533725 CCATTAGGCCCAAATCACATTTATATGGC
1 CCATTAGGCCCAAATCACATTCATATGGC
*** *
85533754 ATGTTAGGCCC-AGTCACATTCATAT
1 CCATTAGGCCCAAATCACATTCATAT
85533779 TCATGCTCAC
Statistics
Matches: 71, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
28 23 0.32
29 47 0.66
30 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (29 bp):
CCATTAGGCCCAAATCACATTCATATGGC
Found at i:85533721 original size:29 final size:29
Alignment explanation
Indices: 85533658--85533753 Score: 115
Period size: 29 Copynumber: 3.3 Consensus size: 29
85533648 TTCACATACC
* * * *
85533658 TGTATCTGGACCATTAAGCCC-AATCATA
1 TGTATATGGCCCATTAGGCCCAAATCACA
*
85533686 T-TCATATGGCCCATTAGGCCCAAATCACC
1 TGT-ATATGGCCCATTAGGCCCAAATCACA
85533715 TGTATATGGCCCATTAGGCCCAAATCACA
1 TGTATATGGCCCATTAGGCCCAAATCACA
*
85533744 TTTATATGGC
1 TGTATATGGC
85533754 ATGTTAGGCC
Statistics
Matches: 58, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
27 1 0.02
28 16 0.28
29 40 0.69
30 1 0.02
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (29 bp):
TGTATATGGCCCATTAGGCCCAAATCACA
Found at i:85533764 original size:58 final size:57
Alignment explanation
Indices: 85533655--85533765 Score: 141
Period size: 58 Copynumber: 1.9 Consensus size: 57
85533645 AAATTCACAT
* * *
85533655 ACCTGTATCTGGACCATTAAGCCCAATCATATTCATATGGCCCATTAGGCCCAAATC
1 ACCTGTATATGGACCATTAAGCCCAATCACATTCATATGGCACATTAGGCCCAAATC
* * * **
85533712 ACCTGTATATGGCCCATTAGGCCCAAATCACATTTATATGGCATGTTAGGCCCA
1 ACCTGTATATGGACCATTAAGCCC-AATCACATTCATATGGCACATTAGGCCCA
85533766 GTCACATTCA
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
57 21 0.47
58 24 0.53
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (57 bp):
ACCTGTATATGGACCATTAAGCCCAATCACATTCATATGGCACATTAGGCCCAAATC
Found at i:85535271 original size:16 final size:17
Alignment explanation
Indices: 85535240--85535278 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 17
85535230 AATAAAAAAG
85535240 TTTGGGATTCTGGGATT
1 TTTGGGATTCTGGGATT
*
85535257 TTTGGG-TTTTGGGATT
1 TTTGGGATTCTGGGATT
85535273 TTTGGG
1 TTTGGG
85535279 GCGTTACAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 15 0.71
17 6 0.29
ACGTcount: A:0.08, C:0.03, G:0.38, T:0.51
Consensus pattern (17 bp):
TTTGGGATTCTGGGATT
Found at i:85535718 original size:19 final size:21
Alignment explanation
Indices: 85535694--85535733 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
85535684 CTTGAATAAA
85535694 GGATGA-TATGC-ATGATTTT
1 GGATGACTATGCAATGATTTT
85535713 GGATGACGTATGCAATGATTT
1 GGATGAC-TATGCAATGATTT
85535734 ATGAAATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.33
21 5 0.28
22 7 0.39
ACGTcount: A:0.28, C:0.07, G:0.28, T:0.38
Consensus pattern (21 bp):
GGATGACTATGCAATGATTTT
Found at i:85536024 original size:41 final size:40
Alignment explanation
Indices: 85535906--85536155 Score: 191
Period size: 41 Copynumber: 6.1 Consensus size: 40
85535896 ATAATATTGT
* * * *
85535906 TGAATTGCACTTACGTGCCCTTAATTCTACTTCGGTACCCC
1 TGAATTGCACTGACGTGCCCCT-ATTGTACTTCAGTACCCC
* * * * * * *
85535947 TGAACTGCA-TATATGTG-CCTTGATTGTATTTTAGTACCTC
1 TGAATTGCACT-GACGTGCCCCT-ATTGTACTTCAGTACCCC
*
85535987 TGAATTGTACTGACGTGCCCCTAGTTGTACTTCAGTACCCC
1 TGAATTGCACTGACGTGCCCCTA-TTGTACTTCAGTACCCC
* * *
85536028 TGAATTGCACTTACGTGCCCCTTATTGTACTTCAATACCTC
1 TGAATTGCACTGACGTGCCCC-TATTGTACTTCAGTACCCC
* * * **
85536069 TAAATTGCACTTATGTGCCCCTAATTGTACTTTGGTACCCC
1 TGAATTGCACTGACGTGCCCCT-ATTGTACTTCAGTACCCC
* * * *
85536110 TCAATTGCA-TGTACGTGCCCCTATTTGTACATCAATACCCT
1 TGAATTGCACTG-ACGTGCCCCTA-TTGTACTTCAGTACCCC
85536151 TGAAT
1 TGAAT
85536156 GTACTTTTGT
Statistics
Matches: 166, Mismatches: 35, Indels: 16
0.76 0.16 0.07
Matches are distributed among these distances:
40 33 0.20
41 131 0.79
42 2 0.01
ACGTcount: A:0.22, C:0.27, G:0.15, T:0.36
Consensus pattern (40 bp):
TGAATTGCACTGACGTGCCCCTATTGTACTTCAGTACCCC
Found at i:85536087 original size:82 final size:82
Alignment explanation
Indices: 85535908--85536148 Score: 274
Period size: 82 Copynumber: 3.0 Consensus size: 82
85535898 AATATTGTTG
* * * *
85535908 AATTGCACTTACGTGCCCTTAATTCTACTTCGGTACCCCTGAACTGCATATATGTG--CCTTGAT
1 AATTGCACTTACGTGCCCCTAATTGTACTTCGGTACCCCTGAATTGCATATACGTGCCCCTT-AT
* * * *
85535971 TGTATTTTAGTACCTCTG
65 TGTACTTCAATACCTCTA
* * * *
85535989 AATTGTACTGACGTGCCCCTAGTTGTACTTCAGTACCCCTGAATTGCACT-TACGTGCCCCTTAT
1 AATTGCACTTACGTGCCCCTAATTGTACTTCGGTACCCCTGAATTGCA-TATACGTGCCCCTTAT
85536053 TGTACTTCAATACCTCTA
65 TGTACTTCAATACCTCTA
* * * *
85536071 AATTGCACTTATGTGCCCCTAATTGTACTTTGGTACCCCTCAATTGCATGTACGTGCCCC-TATT
1 AATTGCACTTACGTGCCCCTAATTGTACTTCGGTACCCCTGAATTGCATATACGTGCCCCTTA-T
*
85536135 TGTACATCAATACC
65 TGTACTTCAATACC
85536149 CTTGAATGTA
Statistics
Matches: 135, Mismatches: 20, Indels: 9
0.82 0.12 0.05
Matches are distributed among these distances:
81 49 0.36
82 82 0.61
83 4 0.03
ACGTcount: A:0.22, C:0.27, G:0.15, T:0.36
Consensus pattern (82 bp):
AATTGCACTTACGTGCCCCTAATTGTACTTCGGTACCCCTGAATTGCATATACGTGCCCCTTATT
GTACTTCAATACCTCTA
Found at i:85536100 original size:20 final size:20
Alignment explanation
Indices: 85535989--85536139 Score: 92
Period size: 20 Copynumber: 7.4 Consensus size: 20
85535979 AGTACCTCTG
*
85535989 AATTGTACTGACGTGCCCCT
1 AATTGTACTTACGTGCCCCT
* *
85536009 AGTTGTACTT-CAGTACCCCT
1 AATTGTACTTAC-GTGCCCCT
*
85536029 GAATTGCACTTACGTGCCCCT
1 -AATTGTACTTACGTGCCCCT
* * * *
85536050 TATTGTACTT-CAATACCTCT
1 AATTGTACTTAC-GTGCCCCT
* *
85536070 AAATTGCACTTATGTGCCCCT
1 -AATTGTACTTACGTGCCCCT
** *
85536091 AATTGTACTTTGGTACCCCT
1 AATTGTACTTACGTGCCCCT
*
85536111 CAATTGCA-TGTACGTGCCCCT
1 -AATTGTACT-TACGTGCCCCT
*
85536132 ATTTGTAC
1 AATTGTAC
85536140 ATCAATACCC
Statistics
Matches: 95, Mismatches: 27, Indels: 17
0.68 0.19 0.12
Matches are distributed among these distances:
19 2 0.02
20 50 0.53
21 42 0.44
22 1 0.01
ACGTcount: A:0.21, C:0.28, G:0.15, T:0.35
Consensus pattern (20 bp):
AATTGTACTTACGTGCCCCT
Found at i:85543485 original size:57 final size:57
Alignment explanation
Indices: 85543394--85543563 Score: 277
Period size: 57 Copynumber: 3.0 Consensus size: 57
85543384 GTAATTGTAG
*
85543394 TAGGTCTCACTTTCCAATTTCCTAGCTTCCTGAAAATAGCATAGGCATTAGATTTAA
1 TAGGTCTCACTTTCCAAATTCCTAGCTTCCTGAAAATAGCATAGGCATTAGATTTAA
* *
85543451 TATGTCTCACTTTCCAAATTCCTAGCTTCCTGAAAATAGCATAGGCATTAGATTTAG
1 TAGGTCTCACTTTCCAAATTCCTAGCTTCCTGAAAATAGCATAGGCATTAGATTTAA
* * * *
85543508 TAGGTATCGCTTTCCAAATTCTTAGCTTCCTGAAAATAGCATATGCATTAGATTTA
1 TAGGTCTCACTTTCCAAATTCCTAGCTTCCTGAAAATAGCATAGGCATTAGATTTA
85543564 TACTCGCTCC
Statistics
Matches: 105, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
57 105 1.00
ACGTcount: A:0.30, C:0.20, G:0.14, T:0.36
Consensus pattern (57 bp):
TAGGTCTCACTTTCCAAATTCCTAGCTTCCTGAAAATAGCATAGGCATTAGATTTAA
Found at i:85543820 original size:12 final size:12
Alignment explanation
Indices: 85543789--85543821 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
85543779 TTGGCATGAA
85543789 AATATTTATTTT
1 AATATTTATTTT
*
85543801 ATTA-TTATTTT
1 AATATTTATTTT
85543812 AATATTTATT
1 AATATTTATT
85543822 GTATGTTAGC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
11 10 0.56
12 8 0.44
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
AATATTTATTTT
Found at i:85546919 original size:27 final size:27
Alignment explanation
Indices: 85546889--85547406 Score: 533
Period size: 27 Copynumber: 19.2 Consensus size: 27
85546879 TACTGAAATG
85546889 CCCTCGATTTATAGAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* * * *
85546916 CCCTCAATTTGTAAAATTACCGTTCTA
1 CCCTCGATTTATAGAATTACCGTTTTA
*
85546943 CCCTCAATTTATAGAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* * * * *
85546970 CCCTCAATTTGTAAAATTATCGTTCTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* * * *
85546997 CCTTCGATTTACAAAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* *
85547024 CCCTC-AGTTTACAGAATTACCATTTTA
1 CCCTCGA-TTTATAGAATTACCGTTTTA
* *
85547051 CCCTCGATTTACAGAATTATCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* ***
85547078 CCCTC-AGTTTACAGAATTATTATTTTA
1 CCCTCGA-TTTATAGAATTACCGTTTTA
*
85547105 CCCTCGATTTATAGAATTATCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* ** * *
85547132 CCCTCAATTGGTAAAATTACCGTTCTA
1 CCCTCGATTTATAGAATTACCGTTTTA
*
85547159 CCCTCGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* *
85547186 CCCTC-AGTTTACAGAATTACCATTTTA
1 CCCTCGA-TTTATAGAATTACCGTTTTA
*
85547213 CCCTCGATTTATAGAATTATCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* ***
85547240 CCCTC-AGTTTACAGAATTACTACTTTA
1 CCCTCGA-TTTATAGAATTACCGTTTTA
*
85547267 CCCTCGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
*
85547294 CCCTCGATTTGTA-AGATTACCGTTTTA
1 CCCTCGATTTATAGA-ATTACCGTTTTA
* *
85547321 CCCTCGATTTATAGAATTACTGGTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* * * * *
85547348 CCTTCGGTTTACAAAATTATCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
**
85547375 CCCTCGATTTATAGAATTACTATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
85547402 CCCTC
1 CCCTC
85547407 AATTGTGAAA
Statistics
Matches: 411, Mismatches: 70, Indels: 20
0.82 0.14 0.04
Matches are distributed among these distances:
26 5 0.01
27 401 0.98
28 5 0.01
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCGTTTTA
Found at i:85546958 original size:54 final size:54
Alignment explanation
Indices: 85546889--85547410 Score: 594
Period size: 54 Copynumber: 9.7 Consensus size: 54
85546879 TACTGAAATG
** *
85546889 CCCTCGATTTATAGAATTACCGTTTTACCCTCAATTTGTAAAATTACCGTTCTA
1 CCCTCGATTTATAGAATTACCGTTTTACCCTCAATTTACAAAATTACCGTTTTA
* ** * *
85546943 CCCTCAATTTATAGAATTACCGTTTTACCCTCAATTTGTAAAATTATCGTTCTA
1 CCCTCGATTTATAGAATTACCGTTTTACCCTCAATTTACAAAATTACCGTTTTA
* * * * * * *
85546997 CCTTCGATTTACAAAATTACCATTTTACCCTCAGTTTACAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTACCCTCAATTTACAAAATTACCGTTTTA
* * * * ***
85547051 CCCTCGATTTACAGAATTATCGTTTTACCCTCAGTTTACAGAATTATTATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTACCCTCAATTTACAAAATTACCGTTTTA
* *** *
85547105 CCCTCGATTTATAGAATTATCGTTTTACCCTCAATTGGTAAAATTACCGTTCTA
1 CCCTCGATTTATAGAATTACCGTTTTACCCTCAATTTACAAAATTACCGTTTTA
* * * *
85547159 CCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTACCCTCAATTTACAAAATTACCGTTTTA
* * * ***
85547213 CCCTCGATTTATAGAATTATCGTTTTACCCTCAGTTTACAGAATTACTACTTTA
1 CCCTCGATTTATAGAATTACCGTTTTACCCTCAATTTACAAAATTACCGTTTTA
* * ** *
85547267 CCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTGTAAGATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTACCCTCAATTTACAAAATTACCGTTTTA
* * * ** *
85547321 CCCTCGATTTATAGAATTACTGGTTTACCTTCGGTTTACAAAATTATCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTACCCTCAATTTACAAAATTACCGTTTTA
**
85547375 CCCTCGATTTATAGAATTACTATTTTACCCTCAATT
1 CCCTCGATTTATAGAATTACCGTTTTACCCTCAATT
85547411 GTGAAATTAC
Statistics
Matches: 400, Mismatches: 68, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 400 1.00
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (54 bp):
CCCTCGATTTATAGAATTACCGTTTTACCCTCAATTTACAAAATTACCGTTTTA
Found at i:85547452 original size:27 final size:27
Alignment explanation
Indices: 85547415--85547610 Score: 239
Period size: 27 Copynumber: 7.3 Consensus size: 27
85547405 TCAATTGTGA
*
85547415 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
85547442 AATCACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * *
85547469 AATTACTAAAATACCCTTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
85547496 AATTACCGAAATACCCCCGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
85547523 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
85547550 AAATACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* ** * *
85547577 AATTACCGAGATACCTTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
85547604 AATTACC
1 AATTACC
85547611 ATTTTGCCCC
Statistics
Matches: 143, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 143 1.00
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:85547847 original size:27 final size:26
Alignment explanation
Indices: 85547809--85547891 Score: 121
Period size: 27 Copynumber: 3.1 Consensus size: 26
85547799 CAGAGGAAGC
*
85547809 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
85547836 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* *
85547862 GTATCTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
85547889 GTT
1 GTT
85547892 GACCGATTGA
Statistics
Matches: 52, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
26 10 0.19
27 42 0.81
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.36
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:85548013 original size:22 final size:22
Alignment explanation
Indices: 85547979--85548037 Score: 55
Period size: 22 Copynumber: 2.7 Consensus size: 22
85547969 CCCGTTATTA
* *
85547979 ATGGCTCTATGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
85548001 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
85548023 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
85548038 ACGTATTTAC
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:85548224 original size:27 final size:27
Alignment explanation
Indices: 85548202--85548270 Score: 86
Period size: 27 Copynumber: 2.6 Consensus size: 27
85548192 TAGGTGGGTT
*
85548202 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
85548229 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
* *
85548256 TGTCACGATATCTGT
1 TGCCACAATATCTGT
85548271 TCTAGTAGCC
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
27 36 0.97
28 1 0.03
ACGTcount: A:0.19, C:0.25, G:0.20, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:85548429 original size:6 final size:6
Alignment explanation
Indices: 85548418--85548700 Score: 210
Period size: 6 Copynumber: 46.8 Consensus size: 6
85548408 CTGTCACCTA
*
85548418 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG -TTACTA ATAT-TG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG AT-TCTG ATTCTG
* * * * *
85548466 ATTCTG ATTCTG ATACTA ATTCTA ATTCTG ATTCT- ATCACCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG
* *
85548515 ATTCTG ATTCTG ATTCTG -TTACTA ATAT-TG ATTCTG ATTCTG ATTTTG
1 ATTCTG ATTCTG ATTCTG ATT-CTG AT-TCTG ATTCTG ATTCTG ATTCTG
* * * * *
85548563 -TTACTA ATACTG ATTCTG ATTCTG ATTCTG -TTACTA ATTTTT ATTCTG
1 ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
* * * *
85548611 ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG ATTCTG -TTACTA ATAT-TA
1 ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG AT-TCTG
*
85548660 ATTCTG ATACTG ATTCTG -TTACTG ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
85548701 CATTTTGGTT
Statistics
Matches: 223, Mismatches: 30, Indels: 48
0.74 0.10 0.16
Matches are distributed among these distances:
5 18 0.08
6 187 0.84
7 12 0.05
8 6 0.03
ACGTcount: A:0.23, C:0.16, G:0.12, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:85548464 original size:30 final size:30
Alignment explanation
Indices: 85548428--85548700 Score: 308
Period size: 30 Copynumber: 9.4 Consensus size: 30
85548418 ATTCTGATTC
85548428 TGATTCTGATTCTGATTCTGTTACTAATAT
1 TGATTCTGATTCTGATTCTGTTACTAATAT
*
85548458 TGATTCTGATTCTGATTCTGATACTAAT-T
1 TGATTCTGATTCTGATTCTGTTACTAATAT
*
85548487 CTAATTCTGATTCT-A-TC----ACCTAAT-T
1 -TGATTCTGATTCTGATTCTGTTA-CTAATAT
85548512 CTGATTCTGATTCTGATTCTGTTACTAATAT
1 -TGATTCTGATTCTGATTCTGTTACTAATAT
* *
85548543 TGATTCTGATTCTGATTTTGTTACTAATAC
1 TGATTCTGATTCTGATTCTGTTACTAATAT
85548573 TGATTCTGATTCTGATTCTGTTACT-A-AT
1 TGATTCTGATTCTGATTCTGTTACTAATAT
*
85548601 T--TT-T-ATTCTGATTCTGTCACCTAAT-T
1 TGATTCTGATTCTGATTCTGTTA-CTAATAT
85548627 CTGATTCTGATTCTGATTCTGTTACTAATAT
1 -TGATTCTGATTCTGATTCTGTTACTAATAT
* * *
85548658 TAATTCTGATACTGATTCTGTTACTGAT-T
1 TGATTCTGATTCTGATTCTGTTACTAATAT
85548687 CTGATTCTGATTCT
1 -TGATTCTGATTCT
85548701 CATTTTGGTT
Statistics
Matches: 210, Mismatches: 14, Indels: 38
0.80 0.05 0.15
Matches are distributed among these distances:
24 15 0.07
25 22 0.10
26 5 0.02
27 3 0.01
28 4 0.02
29 6 0.03
30 138 0.66
31 17 0.08
ACGTcount: A:0.23, C:0.16, G:0.12, T:0.49
Consensus pattern (30 bp):
TGATTCTGATTCTGATTCTGTTACTAATAT
Found at i:85548545 original size:85 final size:84
Alignment explanation
Indices: 85548418--85548700 Score: 360
Period size: 85 Copynumber: 3.3 Consensus size: 84
85548408 CTGTCACCTA
*
85548418 ATTCTGATT-CTGATTCTGATTCTGATTCTGTTACTAATATTGATTCTGATTCTGATTCTGATAC
1 ATTCT-ATTACTGATTCTGATTCTGATTCTGTTACTAATATTGATTCTGATTCTGATTCTGTTAC
85548482 TAATTCTAATTCTGATTCT-
65 TAATTCTAATTCTGATTCTG
* *
85548501 ATCACCTAATT-CTGATTCTGATTCTGATTCTGTTACTAATATTGATTCTGATTCTGATTTTGTT
1 AT--TCT-ATTACTGATTCTGATTCTGATTCTGTTACTAATATTGATTCTGATTCTGATTCTGTT
* *
85548565 ACTAATACTGATTCTGATTCTG
63 ACTAATTCTAATTCTGATTCTG
* * * * *
85548587 ATTCTGTTACTAATTTTTATTCTGATTCTGTCACCTAAT-TCTGATTCTGATTCTGATTCTGTTA
1 ATTCTATTACTGATTCTGATTCTGATTCTGTTA-CTAATAT-TGATTCTGATTCTGATTCTGTTA
*
85548651 CTAATAT-TAATTCTGATACTG
64 CTAAT-TCTAATTCTGATTCTG
*
85548672 ATTCTGTTACTGATTCTGATTCTGATTCT
1 ATTCTATTACTGATTCTGATTCTGATTCT
85548701 CATTTTGGTT
Statistics
Matches: 174, Mismatches: 19, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
83 4 0.02
84 23 0.13
85 145 0.83
86 2 0.01
ACGTcount: A:0.23, C:0.16, G:0.12, T:0.49
Consensus pattern (84 bp):
ATTCTATTACTGATTCTGATTCTGATTCTGTTACTAATATTGATTCTGATTCTGATTCTGTTACT
AATTCTAATTCTGATTCTG
Found at i:85548598 original size:115 final size:115
Alignment explanation
Indices: 85548428--85548700 Score: 456
Period size: 115 Copynumber: 2.4 Consensus size: 115
85548418 ATTCTGATTC
*
85548428 TGATTCTGATTCTGATTCTGTTACTAATATTGATTCTGATTCTGATTCTGATACTAATTCTAATT
1 TGATTCTGATTCTGATTCTGTTACTAATACTGATTCTGATTCTGATTCTGATACTAATTCTAATT
85548493 CTGATTCTATCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATAT
66 CTGATTCTATCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATAT
* * * *
85548543 TGATTCTGATTCTGATTTTGTTACTAATACTGATTCTGATTCTGATTCTGTTACTAATTTTTATT
1 TGATTCTGATTCTGATTCTGTTACTAATACTGATTCTGATTCTGATTCTGATACTAATTCTAATT
*
85548608 CTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATAT
66 CTGATTCTATCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATAT
* * * *
85548658 TAATTCTGATACTGATTCTGTTACTGATTCTGATTCTGATTCT
1 TGATTCTGATTCTGATTCTGTTACTAATACTGATTCTGATTCT
85548701 CATTTTGGTT
Statistics
Matches: 147, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
115 147 1.00
ACGTcount: A:0.23, C:0.16, G:0.12, T:0.49
Consensus pattern (115 bp):
TGATTCTGATTCTGATTCTGTTACTAATACTGATTCTGATTCTGATTCTGATACTAATTCTAATT
CTGATTCTATCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATAT
Found at i:85550721 original size:27 final size:27
Alignment explanation
Indices: 85550685--85551206 Score: 497
Period size: 27 Copynumber: 19.3 Consensus size: 27
85550675 TACTGAAATG
*
85550685 CCCTCGATTTATAGAATTACCGTTTTA
1 CCCTCAATTTATAGAATTACCGTTTTA
* * * * *
85550712 CGCTCAATTTGTAAAATTATCGTTCTA
1 CCCTCAATTTATAGAATTACCGTTTTA
*
85550739 CCCTCGATTTATAGAATTACCGTTTTA
1 CCCTCAATTTATAGAATTACCGTTTTA
* * *
85550766 CCCTCAATTTGTAAAATTACCGTTCTA
1 CCCTCAATTTATAGAATTACCGTTTTA
85550793 CCCTCAATTTATAGAATTACCGTTTTA
1 CCCTCAATTTATAGAATTACCGTTTTA
* * *
85550820 CCCTCAGTTTACAGAATTACCATTTTA
1 CCCTCAATTTATAGAATTACCGTTTTA
* * * *
85550847 CCCTCGATTTACAGAACTATCGTTTTA
1 CCCTCAATTTATAGAATTACCGTTTTA
* * *
85550874 CCCTTAATTTACAGAATTACTGTTTTA
1 CCCTCAATTTATAGAATTACCGTTTTA
* * *
85550901 TCCTCGATTTATAGAATTATCGTTTTA
1 CCCTCAATTTATAGAATTACCGTTTTA
* * *
85550928 CCCTCAATTTGTAAAATTACCGTTCTA
1 CCCTCAATTTATAGAATTACCGTTTTA
*
85550955 CCCTCGAA-TTACAGAATTACCGTTTTA
1 CCCTC-AATTTATAGAATTACCGTTTTA
* * * *
85550982 CCCTCAGTTTACAAAATTACCATTTTA
1 CCCTCAATTTATAGAATTACCGTTTTA
* * *
85551009 CCCTCGATTTATAGAATTATCATTTTA
1 CCCTCAATTTATAGAATTACCGTTTTA
* * **
85551036 CCCTCAGTTTACAGAATTACTATTTTA
1 CCCTCAATTTATAGAATTACCGTTTTA
* ** * *
85551063 CGCTTGATTTACAGAATTATCGTTTTA
1 CCCTCAATTTATAGAATTACCGTTTTA
* * * * *
85551090 CCCTCGATTTGTAAAATTATCATTTTA
1 CCCTCAATTTATAGAATTACCGTTTTA
* * *
85551117 CCCTCGATTTATAGAATTACTGATTTA
1 CCCTCAATTTATAGAATTACCGTTTTA
** * * *
85551144 CCCTCGGTTTACAAAATTATCGTTTTA
1 CCCTCAATTTATAGAATTACCGTTTTA
* * *
85551171 CCCTCGATTTACAGAATTACTGTTTTA
1 CCCTCAATTTATAGAATTACCGTTTTA
85551198 CCCTCAATT
1 CCCTCAATT
85551207 GTGAAATTAC
Statistics
Matches: 402, Mismatches: 91, Indels: 4
0.81 0.18 0.01
Matches are distributed among these distances:
26 1 0.00
27 399 0.99
28 2 0.00
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.40
Consensus pattern (27 bp):
CCCTCAATTTATAGAATTACCGTTTTA
Found at i:85550754 original size:54 final size:54
Alignment explanation
Indices: 85550685--85551206 Score: 603
Period size: 54 Copynumber: 9.7 Consensus size: 54
85550675 TACTGAAATG
* ** * *
85550685 CCCTCGATTTATAGAATTACCGTTTTACGCTCAATTTGTAAAATTATCGTTCTA
1 CCCTCGATTTATAGAATTACCGTTTTACCCTCAATTTACAAAATTACCGTTTTA
** *
85550739 CCCTCGATTTATAGAATTACCGTTTTACCCTCAATTTGTAAAATTACCGTTCTA
1 CCCTCGATTTATAGAATTACCGTTTTACCCTCAATTTACAAAATTACCGTTTTA
* * * *
85550793 CCCTCAATTTATAGAATTACCGTTTTACCCTCAGTTTACAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTACCCTCAATTTACAAAATTACCGTTTTA
* * * * * *
85550847 CCCTCGATTTACAGAACTATCGTTTTACCCTTAATTTACAGAATTACTGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTACCCTCAATTTACAAAATTACCGTTTTA
* * ** *
85550901 TCCTCGATTTATAGAATTATCGTTTTACCCTCAATTTGTAAAATTACCGTTCTA
1 CCCTCGATTTATAGAATTACCGTTTTACCCTCAATTTACAAAATTACCGTTTTA
* * * *
85550955 CCCTCGAATTACAGAATTACCGTTTTACCCTCAGTTTACAAAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTACCCTCAATTTACAAAATTACCGTTTTA
* * * * **
85551009 CCCTCGATTTATAGAATTATCATTTTACCCTCAGTTTACAGAATTACTATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTACCCTCAATTTACAAAATTACCGTTTTA
* * * * * ** * *
85551063 CGCTTGATTTACAGAATTATCGTTTTACCCTCGATTTGTAAAATTATCATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTACCCTCAATTTACAAAATTACCGTTTTA
* * ** *
85551117 CCCTCGATTTATAGAATTACTGATTTACCCTCGGTTTACAAAATTATCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTACCCTCAATTTACAAAATTACCGTTTTA
* *
85551171 CCCTCGATTTACAGAATTACTGTTTTACCCTCAATT
1 CCCTCGATTTATAGAATTACCGTTTTACCCTCAATT
85551207 GTGAAATTAC
Statistics
Matches: 402, Mismatches: 66, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 402 1.00
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.40
Consensus pattern (54 bp):
CCCTCGATTTATAGAATTACCGTTTTACCCTCAATTTACAAAATTACCGTTTTA
Found at i:85551241 original size:27 final size:27
Alignment explanation
Indices: 85551219--85551406 Score: 232
Period size: 27 Copynumber: 7.0 Consensus size: 27
85551209 GAAATTACTA
85551219 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* **
85551246 AAATACCCCTATAGGGTAGAATTACTA
1 AAATACCCCTGTAGGGTAGAATTACCG
* * *
85551273 AAATACCCTTATAGGATAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
85551300 AAATACCCCCGTAGGGTAGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * *
85551327 AAATACACTTGTAGGGTAGAAATACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
85551354 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* ** * *
85551381 AGATACCTTTGTTGGGTAAAATTACC
1 AAATACCCCTGTAGGGTAGAATTACC
85551407 ATTTTGCCCC
Statistics
Matches: 136, Mismatches: 25, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 136 1.00
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACCG
Found at i:85551643 original size:27 final size:26
Alignment explanation
Indices: 85551605--85551684 Score: 115
Period size: 27 Copynumber: 3.0 Consensus size: 26
85551595 CAGAGGAAGC
*
85551605 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
85551632 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* *
85551658 GTATCTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
85551685 ATTGACCGAT
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
26 9 0.18
27 40 0.82
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.35
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:85552038 original size:27 final size:26
Alignment explanation
Indices: 85551998--85552071 Score: 76
Period size: 27 Copynumber: 2.8 Consensus size: 26
85551988 TAGGTGGGTT
* * *
85551998 TGCCACATTTTCTGATTCTGGTGGCTC
1 TGCCACAATATCTG-TTCTGGTGACTC
*
85552025 TGCCACAATATCTGTATCTAGTGACTC
1 TGCCACAATATCTGT-TCTGGTGACTC
* *
85552052 TGTCACAATACCTGTTCTGG
1 TGCCACAATATCTGTTCTGG
85552072 CAGCCATGCT
Statistics
Matches: 39, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
26 5 0.13
27 34 0.87
ACGTcount: A:0.19, C:0.26, G:0.19, T:0.36
Consensus pattern (26 bp):
TGCCACAATATCTGTTCTGGTGACTC
Found at i:85552225 original size:6 final size:6
Alignment explanation
Indices: 85552214--85552393 Score: 142
Period size: 6 Copynumber: 29.8 Consensus size: 6
85552204 CTGTCACCTA
* *
85552214 ATTCTG ATTCTG ATTCTG ATTTTG -TTACTA ATAT-TG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG AT-TCTG ATTCTG ATTCTG
* *
85552262 ATTCTG -TTACTA ATACTG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG
1 ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG
* * * *
85552310 GTTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG -TTACTA ATAT-TG
1 ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATT-CTG AT-TCTG
*
85552359 ATTCTG ATTCTG -TTACTG ATTCTG ATTTTG ATTCT
1 ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
85552394 CATTTTGGTT
Statistics
Matches: 139, Mismatches: 18, Indels: 34
0.73 0.09 0.18
Matches are distributed among these distances:
5 13 0.09
6 114 0.82
7 9 0.06
8 3 0.02
ACGTcount: A:0.20, C:0.16, G:0.14, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:85552252 original size:30 final size:30
Alignment explanation
Indices: 85552189--85552382 Score: 190
Period size: 30 Copynumber: 6.6 Consensus size: 30
85552179 TTGCATTCAC
* *
85552189 ATTCTGATTGTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTA-CTAATTCTG
*
85552220 ATTCTGATTCTGATTTTGTTACTAATAT-TG
1 ATTCTGATTCTGATTCTGTTACTAAT-TCTG
*
85552250 ATTCTGATTCTGATTCTGTTACTAATACTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
85552280 ATTCTGATTCTGATTCTG-T--T-A--CTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
* *
85552304 ATTCTGGTTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTA-CTAATTCTG
** * *
85552335 ATTCTGATTCTG-TTACTAATATTGATTCTG
1 ATTCTGATTCTGATT-CTGTTACTAATTCTG
85552365 ATTCTG-TTACTGATTCTG
1 ATTCTGATT-CTGATTCTG
85552383 ATTTTGATTC
Statistics
Matches: 137, Mismatches: 14, Indels: 25
0.78 0.08 0.14
Matches are distributed among these distances:
24 20 0.15
26 1 0.01
27 1 0.01
28 1 0.01
29 4 0.03
30 72 0.53
31 38 0.28
ACGTcount: A:0.20, C:0.16, G:0.15, T:0.48
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATTCTG
Found at i:85552255 original size:24 final size:25
Alignment explanation
Indices: 85552222--85552393 Score: 163
Period size: 24 Copynumber: 6.6 Consensus size: 25
85552212 TAATTCTGAT
*
85552222 TCTGATTCTGATTTTGTTACTAATATTGA
1 TCTGATTCTGATTCTGTTACT-A-A-T-A
85552251 TTCTGATTCTGATTCTGTTACTAATACTGA
1 -TCTGATTCTGATTCTGTTACT-A-A-T-A
*
85552281 TTCTGATTCTGATTCTGTTACTGAT-
1 -TCTGATTCTGATTCTGTTACTAATA
* *
85552306 TCTGGTTCTGATTCTGTCACCTAAT-
1 TCTGATTCTGATTCTGTTA-CTAATA
85552331 TCTGATTCTGATTCTGTTACTAATA
1 TCTGATTCTGATTCTGTTACTAATA
*
85552356 T-TGATTCTGATTCTGTTACTGAT-
1 TCTGATTCTGATTCTGTTACTAATA
*
85552379 TCTGATTTTGATTCT
1 TCTGATTCTGATTCT
85552394 CATTTTGGTT
Statistics
Matches: 129, Mismatches: 10, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
23 1 0.01
24 55 0.43
25 22 0.17
27 1 0.01
28 1 0.01
30 49 0.38
ACGTcount: A:0.20, C:0.16, G:0.15, T:0.50
Consensus pattern (25 bp):
TCTGATTCTGATTCTGTTACTAATA
Found at i:85557764 original size:24 final size:24
Alignment explanation
Indices: 85557732--85557782 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
85557722 ACATTTTTAT
85557732 CAAAAATCACTTAATTAAACCTGA
1 CAAAAATCACTTAATTAAACCTGA
*
85557756 CAAAAATCACTTAATTAAACTTGA
1 CAAAAATCACTTAATTAAACCTGA
85557780 CAA
1 CAA
85557783 TCTAACAACA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.51, C:0.20, G:0.04, T:0.25
Consensus pattern (24 bp):
CAAAAATCACTTAATTAAACCTGA
Found at i:85561561 original size:43 final size:42
Alignment explanation
Indices: 85561496--85561614 Score: 134
Period size: 43 Copynumber: 2.8 Consensus size: 42
85561486 AGCTAGTACA
* * *
85561496 ATGCCATATCCCAGATATGGTCTTACATGTTATCACA-T-ATCG
1 ATGCCATGTCCCAGACATGGTCTTACATGTAATCA-ATTAAT-G
* * *
85561538 ATGCCACTGTCCCAGACAGGGTCTTACACGAAATCAATTAATG
1 ATGCCA-TGTCCCAGACATGGTCTTACATGTAATCAATTAATG
85561581 ATGCCAATGTCCCAGACATGGTCTTACATGTAAT
1 ATGCC-ATGTCCCAGACATGGTCTTACATGTAAT
85561615 TACATTTCTA
Statistics
Matches: 64, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
42 7 0.11
43 54 0.84
44 3 0.05
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (42 bp):
ATGCCATGTCCCAGACATGGTCTTACATGTAATCAATTAATG
Found at i:85564566 original size:27 final size:27
Alignment explanation
Indices: 85564536--85564710 Score: 199
Period size: 27 Copynumber: 6.5 Consensus size: 27
85564526 AAATTGTACA
*
85564536 GCACTAAGTGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGAATTGACTATGTT
* * *
85564563 GCACTAAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCGAATTGACTATGTT
* **
85564590 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTT
* *
85564617 GCACTAAGTGTGCGAGTTGACTATGTA
1 GCACTAAGTGTGCGAATTGACTATGTT
* *
85564644 GCACTAAGTGTGCGATTTGATTATG-T
1 GCACTAAGTGTGCGAATTGACTATGTT
* * * *
85564670 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAATTGACTATGTT
*
85564697 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
85564711 GACTCAATAT
Statistics
Matches: 127, Mismatches: 20, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
26 23 0.18
27 104 0.82
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTT
Found at i:85564596 original size:54 final size:54
Alignment explanation
Indices: 85564535--85564710 Score: 232
Period size: 54 Copynumber: 3.3 Consensus size: 54
85564525 TAAATTGTAC
**
85564535 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGATTTGACTATG-TGCACTAAGTGTGCGAGTTGAATATGAT
* * * *
85564590 -GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTGACTATG-T
1 AGCACTAAGTGTGCGATTTGACTATG-TGCACTAAGTGTGCGAGTTGAATATGAT
* *
85564643 AGCACTAAGTGTGCGATTTGATTATGTGCACTAAGTGTGCGAGTTGATTAT-AT
1 AGCACTAAGTGTGCGATTTGACTATGTGCACTAAGTGTGCGAGTTGAATATGAT
*
85564696 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
85564711 GACTCAATAT
Statistics
Matches: 106, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
53 39 0.37
54 67 0.63
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (54 bp):
AGCACTAAGTGTGCGATTTGACTATGTGCACTAAGTGTGCGAGTTGAATATGAT
Found at i:85572449 original size:27 final size:27
Alignment explanation
Indices: 85572418--85572595 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
85572408 TAAATTGTAC
*
85572418 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
85572445 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
85572471 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
85572499 GGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
85572526 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * * *
85572554 GGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
85572581 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
85572596 GACTTAATAT
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 104 0.81
28 24 0.19
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:85572479 original size:54 final size:55
Alignment explanation
Indices: 85572418--85572595 Score: 236
Period size: 54 Copynumber: 3.3 Consensus size: 55
85572408 TAAATTGTAC
* **
85572418 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGAT
* * * *
85572473 -GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTGACTATG-T
1 AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGAT
* *
85572526 AGCACTAAGTGTGCGAGTTTGATTATGTGGCACTAAGTGTGCGAGTTGATTAT-AT
1 AGCACTAAGTGTGCGA-TTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGAT
*
85572581 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
85572596 GACTTAATAT
Statistics
Matches: 107, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
53 1 0.01
54 60 0.56
55 46 0.43
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGAT
Found at i:85575895 original size:6 final size:6
Alignment explanation
Indices: 85575874--85576059 Score: 94
Period size: 6 Copynumber: 30.2 Consensus size: 6
85575864 TAGCAGAACT
* * * * * *
85575874 AGAATC AAAATG AGAATC AGAATC AG-GTGAC AAAATC AAAATT AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC
* * * *
85575923 AGAATC AGAATA AGAATT AGGTAA-C AAAATC AGAATC AGTATC AGGTAAT-
1 AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC A-G-AATC
* * * *
85575973 AGAATC AGAATC AGAACC AGAATC AAAACC AGAATC AGAATT AGGTAA-C
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC A-G-AATC
* * *
85576022 AGAATT AGAATC AGTATC AGGTAA-C AGAATC AAAATC A
1 AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC A
85576060 AAATGTGAAT
Statistics
Matches: 135, Mismatches: 30, Indels: 30
0.69 0.15 0.15
Matches are distributed among these distances:
5 10 0.07
6 106 0.79
7 11 0.08
8 8 0.06
ACGTcount: A:0.51, C:0.13, G:0.17, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:85575955 original size:25 final size:25
Alignment explanation
Indices: 85575922--85576059 Score: 145
Period size: 25 Copynumber: 5.6 Consensus size: 25
85575912 AAATTAGAAT
* *
85575922 CAGAATCAGAATAAGAATTAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
* *
85575947 CAAAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
* *
85575972 TAGAATCAGAATCAGAACCA-G-AA
1 CAGAATCAGAATCAGAATCAGGTAA
* * *
85575995 TCAAAACCAGAATCAGAATTAGGTAA
1 -CAGAATCAGAATCAGAATCAGGTAA
* *
85576021 CAGAATTAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
*
85576046 CAGAATCAAAATCA
1 CAGAATCAGAATCA
85576060 AAATGTGAAT
Statistics
Matches: 90, Mismatches: 20, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
23 2 0.02
24 16 0.18
25 70 0.78
26 2 0.02
ACGTcount: A:0.50, C:0.14, G:0.17, T:0.19
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAGGTAA
Found at i:85576006 original size:74 final size:74
Alignment explanation
Indices: 85575917--85576059 Score: 223
Period size: 74 Copynumber: 1.9 Consensus size: 74
85575907 AATCAAAATT
* * * *
85575917 AGAATCAGAATCAGAATAAGAATTAGGTAACAAAATCAGAATCAGTATCAGGTAATAGAATCAGA
1 AGAATCAAAACCAGAATAAGAATTAGGTAACAAAATCAGAATCAGTATCAGGTAACAGAATCAAA
85575982 ATCAGAACC
66 ATCAGAACC
* * *
85575991 AGAATCAAAACCAGAATCAGAATTAGGTAACAGAATTAGAATCAGTATCAGGTAACAGAATCAAA
1 AGAATCAAAACCAGAATAAGAATTAGGTAACAAAATCAGAATCAGTATCAGGTAACAGAATCAAA
85576056 ATCA
66 ATCA
85576060 AAATGTGAAT
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
74 62 1.00
ACGTcount: A:0.50, C:0.14, G:0.17, T:0.19
Consensus pattern (74 bp):
AGAATCAAAACCAGAATAAGAATTAGGTAACAAAATCAGAATCAGTATCAGGTAACAGAATCAAA
ATCAGAACC
Done.