Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 249 of 295
Found at i:85576076 original size:74 final size:72
Alignment explanation
Indices: 85575904--85576076 Score: 211
Period size: 74 Copynumber: 2.3 Consensus size: 72
85575894 AATCAGGTGA
*
85575904 CAAAATCAAAATTAGAATCAGAATCAGAATAAGAATTAGGTAACAAAATCAGAATCAGTATCAGG
1 CAAAATCAAAATT-GAATCA-AACCAGAATAAGAATTAGGTAACAAAATCAGAATCAGTATCAGG
*
85575969 TAATAGAAT
64 TAACAGAAT
* *** * * *
85575978 CAGAATCAGAACCAGAATCAAAACCAGAATCAGAATTAGGTAACAGAATTAGAATCAGTATCAGG
1 CAAAATCA-AAATTGAATC-AAACCAGAATAAGAATTAGGTAACAAAATCAGAATCAGTATCAGG
85576043 TAACAGAAT
64 TAACAGAAT
85576052 CAAAATCAAAATGTGAATGCAAACC
1 CAAAATCAAAAT-TGAAT-CAAACC
85576077 CAACCCAATC
Statistics
Matches: 82, Mismatches: 13, Indels: 8
0.80 0.13 0.08
Matches are distributed among these distances:
73 2 0.02
74 76 0.93
75 4 0.05
ACGTcount: A:0.51, C:0.14, G:0.16, T:0.19
Consensus pattern (72 bp):
CAAAATCAAAATTGAATCAAACCAGAATAAGAATTAGGTAACAAAATCAGAATCAGTATCAGGTA
ACAGAAT
Found at i:85576216 original size:27 final size:26
Alignment explanation
Indices: 85576185--85576241 Score: 69
Period size: 27 Copynumber: 2.2 Consensus size: 26
85576175 AGGCTGATAG
*
85576185 ATATTGTGACGAAGTCACCAGATACAA
1 ATATTGTGACGAAGCCACCAGA-ACAA
* * *
85576212 ATATTGTGGCTAGGCCACCAGAACAA
1 ATATTGTGACGAAGCCACCAGAACAA
85576238 ATAT
1 ATAT
85576242 ATATATATGT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 8 0.31
27 18 0.69
ACGTcount: A:0.39, C:0.19, G:0.19, T:0.23
Consensus pattern (26 bp):
ATATTGTGACGAAGCCACCAGAACAA
Found at i:85576610 original size:27 final size:27
Alignment explanation
Indices: 85576580--85576721 Score: 122
Period size: 27 Copynumber: 5.3 Consensus size: 27
85576570 GGGGTAAAAT
* *
85576580 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATCTC
* * *
85576607 GGTAATTCTACCTTACAAGAGTATTTC
1 GGTAATTCTACCCTACAAGGGTATCTC
* * * *
85576634 AGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATCTC
* * * * *
85576661 AGTAATTCTACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATCTC
* * *
85576688 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATCTC
*
85576715 GATAATT
1 GGTAATT
85576722 TTGTAAAACG
Statistics
Matches: 100, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 100 1.00
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATCTC
Found at i:85576640 original size:54 final size:54
Alignment explanation
Indices: 85576581--85576721 Score: 174
Period size: 54 Copynumber: 2.6 Consensus size: 54
85576571 GGGTAAAATG
* * * * *
85576581 GTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCTTACAAGAGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGAGTATTTCA
** * * * *
85576635 GTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTATAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGAGTATTTCA
*
85576689 GTAATTCTACCCTACAGGGGTATTTCGATAATT
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATT
85576722 TTGTAAAACG
Statistics
Matches: 73, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 73 1.00
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.36
Consensus pattern (54 bp):
GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGAGTATTTCA
Found at i:85576801 original size:27 final size:28
Alignment explanation
Indices: 85576771--85576902 Score: 103
Period size: 27 Copynumber: 4.9 Consensus size: 28
85576761 GGTACTTTGG
85576771 TAATTTTACAAGTCGA-GGGTATTTCAA
1 TAATTTTACAAGTCGAGGGGTATTTCAA
* *
85576798 TAATTTTACAGGTCGA-GGGTATTTCAG
1 TAATTTTACAAGTCGAGGGGTATTTCAA
* * ***
85576825 TAATTTCACAAATC-AGGGGTATTTTGG
1 TAATTTTACAAGTCGAGGGGTATTTCAA
* * * **
85576852 TAATTTTACAA-ACCATGGGTATTTTGA
1 TAATTTTACAAGTCGAGGGGTATTTCAA
* *
85576879 TAATTTTACAA-ACCAGGGGTATTT
1 TAATTTTACAAGTCGAGGGGTATTT
85576903 TGGTAATTTA
Statistics
Matches: 91, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
26 2 0.02
27 89 0.98
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.38
Consensus pattern (28 bp):
TAATTTTACAAGTCGAGGGGTATTTCAA
Found at i:85576899 original size:81 final size:79
Alignment explanation
Indices: 85576761--85576992 Score: 272
Period size: 81 Copynumber: 2.9 Consensus size: 79
85576751 ATAAATCAAT
* * * * *** **
85576761 GGTACTTTGGTAATTTTACAAGTCGAGGGTATTTCAATAATTTTACAGGTC-GAGGGTATTTCAG
1 GGTATTTTGGTAATTTTACAA-ACCAGGGTATTT-TATAATTTTACAAACCAG-GGGTATTTTGG
85576825 TAATTTCA-CAAA-TCAGG
63 TAATTT-ATCAAACT-AGG
85576842 GGTATTTTGGTAATTTTACAAACCATGGGTATTTTGATAATTTTACAAACCAGGGGTATTTTGGT
1 GGTATTTTGGTAATTTTACAAACCA-GGGTATTTT-ATAATTTTACAAACCAGGGGTATTTTGGT
85576907 AATTTATCAAACTAGG
64 AATTTATCAAACTAGG
*
85576923 GGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTCTACAAACCAGGGGTATTTTGGT
1 GGTATTTTGGTAATTTTACAAACC-AGGGTATTTTA-TAATTTTACAAACCAGGGGTATTTTGGT
85576988 AATTT
64 AATTT
85576993 GGTAAAATAA
Statistics
Matches: 134, Mismatches: 10, Indels: 14
0.85 0.06 0.09
Matches are distributed among these distances:
80 4 0.03
81 127 0.95
82 3 0.02
ACGTcount: A:0.30, C:0.11, G:0.21, T:0.38
Consensus pattern (79 bp):
GGTATTTTGGTAATTTTACAAACCAGGGTATTTTATAATTTTACAAACCAGGGGTATTTTGGTAA
TTTATCAAACTAGG
Found at i:85576903 original size:27 final size:27
Alignment explanation
Indices: 85576814--85576992 Score: 252
Period size: 27 Copynumber: 6.6 Consensus size: 27
85576804 TACAGGTCGA
** * *
85576814 GGGTATTTCAGTAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
85576841 GGGTATTTTGGTAATTTTACAAACCAT
1 GGGTATTTTGGTAATTTTACAAACCAG
*
85576868 GGGTATTTTGATAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
85576895 GGGTATTTTGGTAA-TTTATCAAACTAG
1 GGGTATTTTGGTAATTTTA-CAAACCAG
*
85576922 GGGTATTTTGGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
85576949 GGGTATTTTAGTAATTCTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
85576976 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
85576993 GGTAAAATAA
Statistics
Matches: 134, Mismatches: 16, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
26 4 0.03
27 126 0.94
28 4 0.03
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.39
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:85591263 original size:13 final size:13
Alignment explanation
Indices: 85591240--85591272 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
85591230 AATGTTTTAC
85591240 AATGA-ACATGTT
1 AATGATACATGTT
85591252 AATGATACATGTT
1 AATGATACATGTT
85591265 AAGTGATA
1 AA-TGATA
85591273 TGTGTGTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 5 0.26
13 9 0.47
14 5 0.26
ACGTcount: A:0.42, C:0.06, G:0.18, T:0.33
Consensus pattern (13 bp):
AATGATACATGTT
Found at i:85605735 original size:28 final size:28
Alignment explanation
Indices: 85605698--85605787 Score: 103
Period size: 28 Copynumber: 3.2 Consensus size: 28
85605688 AAGTCTACAT
*
85605698 ACATGCATATGGCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCACT-GGCCCAAATC
* *
85605726 TCATTCATATGGCCCATTGGCCCAAATC
1 ACATTCATATGGCCCACTGGCCCAAATC
* *
85605754 ACATTCATATAGCCCATCTGGCCCGAATC
1 ACATTCATATGGCCCA-CTGGCCCAAATC
85605783 A-ATTC
1 ACATTC
85605788 CAAGCCATGT
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
27 5 0.09
28 37 0.70
29 11 0.21
ACGTcount: A:0.28, C:0.33, G:0.14, T:0.24
Consensus pattern (28 bp):
ACATTCATATGGCCCACTGGCCCAAATC
Found at i:85622851 original size:43 final size:43
Alignment explanation
Indices: 85622731--85622889 Score: 148
Period size: 43 Copynumber: 3.7 Consensus size: 43
85622721 ATCTCATACA
* * *
85622731 ATGCCAACGTCCTAGACGTGGTCTTACATGT-AATCAAATATCA
1 ATGCCAACATCCTAGACGTGGTCTTACACGTAAATCAAATAT-G
* * * *
85622774 ATGCC-ACTACCCCAAACAG-GGTCTTACATG-AAATCAAATATG
1 ATGCCAAC-ATCCTAGAC-GTGGTCTTACACGTAAATCAAATATG
* *
85622816 ATGCCAACATCCTAGACCTGGTCTTACACGTAAATCATAAGT-CG
1 ATGCCAACATCCTAGACGTGGTCTTACACGTAAATCA-AA-TATG
*
85622860 ATGCCAACGTCCTAGACGTGGTCTTACACG
1 ATGCCAACATCCTAGACGTGGTCTTACACG
85622890 ATAACACATA
Statistics
Matches: 95, Mismatches: 13, Indels: 15
0.77 0.11 0.12
Matches are distributed among these distances:
42 23 0.24
43 39 0.41
44 32 0.34
45 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (43 bp):
ATGCCAACATCCTAGACGTGGTCTTACACGTAAATCAAATATG
Found at i:85634249 original size:19 final size:20
Alignment explanation
Indices: 85634221--85634263 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 20
85634211 TTTTAATAAA
* *
85634221 TTTAATAATATTACA-ATTT
1 TTTAAAAATAATACATATTT
*
85634240 TTTAAAAATAATATATATTT
1 TTTAAAAATAATACATATTT
85634260 TTTA
1 TTTA
85634264 TTTTCAAAAC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.53
Consensus pattern (20 bp):
TTTAAAAATAATACATATTT
Found at i:85634696 original size:31 final size:28
Alignment explanation
Indices: 85634646--85634702 Score: 69
Period size: 31 Copynumber: 1.9 Consensus size: 28
85634636 AAGTAAATGT
*
85634646 TGTAAATTATACATCAATTTTGATTTAA
1 TGTAAATTATACATCAATTTTAATTTAA
*
85634674 TGTATAATTATATATACAAATTTTAATTT
1 TGTA-AATTATACAT-C-AATTTTAATTT
85634703 TGTTCAATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 4 0.17
29 9 0.38
30 1 0.04
31 10 0.42
ACGTcount: A:0.40, C:0.05, G:0.05, T:0.49
Consensus pattern (28 bp):
TGTAAATTATACATCAATTTTAATTTAA
Found at i:85641897 original size:17 final size:17
Alignment explanation
Indices: 85641875--85641908 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
85641865 TCTTTTGTGT
85641875 TAGACTGAGTTGGGTAA
1 TAGACTGAGTTGGGTAA
85641892 TAGACTGAGTTGGGTAA
1 TAGACTGAGTTGGGTAA
85641909 GCAACGTGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.06, G:0.35, T:0.29
Consensus pattern (17 bp):
TAGACTGAGTTGGGTAA
Found at i:85649069 original size:31 final size:31
Alignment explanation
Indices: 85649026--85649086 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 31
85649016 GTGGCTTAGG
*
85649026 ACATGCCTGTGTGGGCAGGCCGTGTGGTCAC
1 ACATGCCCGTGTGGGCAGGCCGTGTGGTCAC
*
85649057 ACATGCCCGTGTGGGGAGGCCGTGTGGTCA
1 ACATGCCCGTGTGGGCAGGCCGTGTGGTCA
85649087 AAAACTCCCG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.13, C:0.25, G:0.41, T:0.21
Consensus pattern (31 bp):
ACATGCCCGTGTGGGCAGGCCGTGTGGTCAC
Found at i:85649097 original size:31 final size:31
Alignment explanation
Indices: 85649028--85649099 Score: 92
Period size: 31 Copynumber: 2.3 Consensus size: 31
85649018 GGCTTAGGAC
* * *
85649028 ATGCCTGTGTGGGCAGGCCGTGTGGTCACAC
1 ATGCCCGTGTGGGCAGGCCGTGTGGTCAAAA
*
85649059 ATGCCCGTGTGGGGAGGCCGTGTGGTCAAAA
1 ATGCCCGTGTGGGCAGGCCGTGTGGTCAAAA
85649090 ACT-CCCGTGT
1 A-TGCCCGTGT
85649100 CCCTAACCCG
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
31 35 0.97
32 1 0.03
ACGTcount: A:0.15, C:0.25, G:0.38, T:0.22
Consensus pattern (31 bp):
ATGCCCGTGTGGGCAGGCCGTGTGGTCAAAA
Found at i:85649711 original size:16 final size:16
Alignment explanation
Indices: 85649686--85649716 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
85649676 ACAACCTTTA
85649686 TCATGCCATAAATCAT
1 TCATGCCATAAATCAT
*
85649702 TCATGTCATAAATCA
1 TCATGCCATAAATCA
85649717 CATTTCCAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.23, G:0.06, T:0.32
Consensus pattern (16 bp):
TCATGCCATAAATCAT
Found at i:85650859 original size:43 final size:42
Alignment explanation
Indices: 85650786--85650936 Score: 176
Period size: 42 Copynumber: 3.6 Consensus size: 42
85650776 ATAACAATGA
* * *
85650786 CATATCCCAGATATGGTCTTACATGTAATCTCGTATCGATGC
1 CATATCCCAGATATGGTCTTACACGAAATCTCATATCGATGC
* * * * *
85650828 CAATAGCCCAGCTATGGTATTACACGAAATCTCATATCAATAC
1 C-ATATCCCAGATATGGTCTTACACGAAATCTCATATCGATGC
* * * *
85650871 CATATCCCAAATATGGTCTTACATGAAGTCTCATATAGATGC
1 CATATCCCAGATATGGTCTTACACGAAATCTCATATCGATGC
*
85650913 CATATCCCAGATATAGTCTTACAC
1 CATATCCCAGATATGGTCTTACAC
85650937 ATAGTCTTAG
Statistics
Matches: 88, Mismatches: 20, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
42 54 0.61
43 34 0.39
ACGTcount: A:0.32, C:0.25, G:0.13, T:0.30
Consensus pattern (42 bp):
CATATCCCAGATATGGTCTTACACGAAATCTCATATCGATGC
Found at i:85656917 original size:138 final size:138
Alignment explanation
Indices: 85656531--85657093 Score: 774
Period size: 138 Copynumber: 4.1 Consensus size: 138
85656521 TAGAAAAAAG
** * * *
85656531 AATTATATTCTTTCCAAAAGAATAAAAATTTCCATATCTTTTATGTTTTGACTAAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCAAAATTAATTAA
* * ** * *
85656596 TATATCTATTTATATTAATAAATTCGGTAAAATATACACAATTAATGTTTTGTATGAATCAAATT
66 TATAACTGTTTATATTAATAAATTTAGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
85656661 CATATATT
131 CATATATT
* * * * * * *
85656669 AATTATATTCTTTCCAGAATAATATTAATTTTCAT-TTTTTTATATTTTAACCGAAATTCATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCAAAATTAATTAA
* * *
85656733 TATAATTGTTTATTTTAATAAATTTAGTAAAATATATATAATTAATATTTTGTATGAATCAAATT
66 TATAACTGTTTATATTAATAAATTTAGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
*
85656798 CATATACT
131 CATATATT
* * *
85656806 AATTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTTTATTTTGACCAAAATTAATTCA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCAAAATTAATTAA
*
85656871 TATAACTGTTTATATTAATAAATTTAGTAAAATATATAAAATTAATATTTTGTATGAATCAAATT
66 TATAACTGTTTATATTAATAAATTTAGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
*
85656936 CAAATATT
131 CATATATT
*
85656944 AATTATATTCTTTTCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGA-CAGAAATTAATTA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCA-AAATTAATTA
* * * * *
85657008 ATATAATTGTTTATATTAATAAA-TTCGATAAAATATATACTATAAATATTTTTTATGAATCAAA
65 ATATAACTGTTTATATTAATAAATTTAG-TAAAATATATACAATTAATATTTTGTATGAATCAAA
*
85657072 TTTATATATT
129 TTCATATATT
85657082 AATTATA-TCTTT
1 AATTATATTCTTT
85657094 GGTTTCTATT
Statistics
Matches: 376, Mismatches: 46, Indels: 7
0.88 0.11 0.02
Matches are distributed among these distances:
137 129 0.34
138 247 0.66
ACGTcount: A:0.41, C:0.08, G:0.05, T:0.47
Consensus pattern (138 bp):
AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCAAAATTAATTAA
TATAACTGTTTATATTAATAAATTTAGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
CATATATT
Found at i:85658973 original size:13 final size:13
Alignment explanation
Indices: 85658955--85658979 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
85658945 AACCAATCCC
85658955 TTTAAAATATAAT
1 TTTAAAATATAAT
85658968 TTTAAAATATAA
1 TTTAAAATATAA
85658980 AAAAAATAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
TTTAAAATATAAT
Found at i:85660032 original size:19 final size:18
Alignment explanation
Indices: 85659979--85660040 Score: 67
Period size: 19 Copynumber: 3.5 Consensus size: 18
85659969 TTGAAATTAA
*
85659979 AAATA-TATAAAATATA-
1 AAATATTATAAAAAATAT
*
85659995 AAATATT-TAAAAGGATAT
1 AAATATTATAAAA-AATAT
85660013 AAATATTATAAAAAATTAT
1 AAATATTATAAAAAA-TAT
85660032 AAATATTAT
1 AAATATTAT
85660041 TCCACTTCTC
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
16 10 0.26
17 4 0.10
18 8 0.21
19 17 0.44
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.35
Consensus pattern (18 bp):
AAATATTATAAAAAATAT
Found at i:85663037 original size:41 final size:41
Alignment explanation
Indices: 85662985--85663081 Score: 158
Period size: 41 Copynumber: 2.4 Consensus size: 41
85662975 ACGGCCTGAC
*
85662985 ACACGCCCGTGTCTATGGCCCATGTCCCTCACACGGCCATG
1 ACACGCCCGTGTCTATGGCCCATATCCCTCACACGGCCATG
*
85663026 ACATGCCCGTGTCTATGGCCCATATCCCTCACACGGCCATG
1 ACACGCCCGTGTCTATGGCCCATATCCCTCACACGGCCATG
* *
85663067 AGACGCCCATGTCTA
1 ACACGCCCGTGTCTA
85663082 AAAACCTTGA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.20, C:0.39, G:0.21, T:0.21
Consensus pattern (41 bp):
ACACGCCCGTGTCTATGGCCCATATCCCTCACACGGCCATG
Found at i:85679277 original size:25 final size:26
Alignment explanation
Indices: 85679240--85679291 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
85679230 TCAAACATGC
85679240 ATTTAGGTCAATTTAACCCTAGGGGT
1 ATTTAGGTCAATTTAACCCTAGGGGT
* * *
85679266 ATTTCGGT-AATTTATCTCTAGGGGT
1 ATTTAGGTCAATTTAACCCTAGGGGT
85679291 A
1 A
85679292 AAACTATAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.25, C:0.13, G:0.23, T:0.38
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACCCTAGGGGT
Found at i:85680798 original size:26 final size:26
Alignment explanation
Indices: 85680767--85680874 Score: 173
Period size: 26 Copynumber: 4.2 Consensus size: 26
85680757 TGAAATTCCC
85680767 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
*
85680793 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
* *
85680819 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
85680845 ATCATGGAACATTTACCT-AACCTATT
1 ATCATGGAACATTTACCTAAACC-ATT
85680871 ATCA
1 ATCA
85680875 ATTTGTATCA
Statistics
Matches: 76, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
25 3 0.04
26 73 0.96
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:85685105 original size:25 final size:27
Alignment explanation
Indices: 85685068--85685120 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
85685058 TCAAACATGC
85685068 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
85685094 ATTTTGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
85685120 A
1 A
85685121 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.13, G:0.23, T:0.40
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:85686640 original size:26 final size:26
Alignment explanation
Indices: 85686611--85686715 Score: 174
Period size: 26 Copynumber: 4.0 Consensus size: 26
85686601 AATTCCCATA
* *
85686611 ATGGAATATTTACCTAAACCATTATC
1 ATGGAACATTTACCTAACCCATTATC
85686637 ATGGAACATTTACCTAACCCATTATC
1 ATGGAACATTTACCTAACCCATTATC
* *
85686663 ATGGAATATTTACCTAATCCATTATC
1 ATGGAACATTTACCTAACCCATTATC
85686689 ATGGAACATTTACCTAACCCATTATC
1 ATGGAACATTTACCTAACCCATTATC
85686715 A
1 A
85686716 ATTTGTATCA
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.36, C:0.23, G:0.08, T:0.33
Consensus pattern (26 bp):
ATGGAACATTTACCTAACCCATTATC
Found at i:85686668 original size:52 final size:52
Alignment explanation
Indices: 85686611--85686715 Score: 201
Period size: 52 Copynumber: 2.0 Consensus size: 52
85686601 AATTCCCATA
85686611 ATGGAATATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATTATC
1 ATGGAATATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATTATC
*
85686663 ATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATTATC
1 ATGGAATATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATTATC
85686715 A
1 A
85686716 ATTTGTATCA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.36, C:0.23, G:0.08, T:0.33
Consensus pattern (52 bp):
ATGGAATATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATTATC
Found at i:85688575 original size:43 final size:42
Alignment explanation
Indices: 85688497--85688579 Score: 105
Period size: 42 Copynumber: 2.0 Consensus size: 42
85688487 TATGATTTAC
* *
85688497 GTGTAAGACCATGTCTGGGACATCGGTATCGTATTTGATTTT
1 GTGTAAGACCATGTCTGGGACATCGGCATCATATTTGATTTT
* *
85688539 GTGTAAGACCCTGTTTGGGACAGT-GGCATCAATATTTGATT
1 GTGTAAGACCATGTCTGGGACA-TCGGCATC-ATATTTGATT
85688580 ACATGTAAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
42 25 0.71
43 10 0.29
ACGTcount: A:0.23, C:0.14, G:0.27, T:0.36
Consensus pattern (42 bp):
GTGTAAGACCATGTCTGGGACATCGGCATCATATTTGATTTT
Found at i:85694281 original size:3 final size:3
Alignment explanation
Indices: 85694275--85694303 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
85694265 ATATCAAAAC
85694275 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
85694304 TAAATGTATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:85696190 original size:43 final size:42
Alignment explanation
Indices: 85696097--85696194 Score: 115
Period size: 43 Copynumber: 2.3 Consensus size: 42
85696087 ATCTGTTTCT
*
85696097 CTATTGCTTAGGGGTTTAGATCTGTAAACTCAACCTGTTACC
1 CTATTGCTTAGGGGTTTAGATCTGAAAACTCAACCTGTTACC
* * * * * * *
85696139 CTACTGCTTAGGGGTTTAAGGTTTGAAAATTTAGCTTGTTACC
1 CTATTGCTTAGGGGTTT-AGATCTGAAAACTCAACCTGTTACC
85696182 CTATTGCTTAGGG
1 CTATTGCTTAGGG
85696195 CAATAATATC
Statistics
Matches: 46, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
42 16 0.35
43 30 0.65
ACGTcount: A:0.22, C:0.17, G:0.22, T:0.38
Consensus pattern (42 bp):
CTATTGCTTAGGGGTTTAGATCTGAAAACTCAACCTGTTACC
Found at i:85696211 original size:86 final size:86
Alignment explanation
Indices: 85696039--85696240 Score: 203
Period size: 86 Copynumber: 2.3 Consensus size: 86
85696029 ATATTTGATT
** * * *
85696039 TTCAACCTGTTACCCTACTGCTTAAGGGGTTAAGGCTTGTCATCATTGATCTGTTTCTCTATTGC
1 TTCAACCTGTTACCCTACTGCTT-AGGGGTTAAGGCTTGTCAAAATTGAGCTGTTACCCTATTGC
** * *
85696104 TTAGGGGTTTAGATCTGTAAAC
65 TTAGGGAATAAGATCTATAAAC
* *
85696126 -TCAACCTGTTACCCTACTGCTTAGGGGTTTAAGG-TT-TGAAAATTTAGCTTGTTACCCTATTG
1 TTCAACCTGTTACCCTACTGCTTAGGGG-TTAAGGCTTGTCAAAATTGAGC-TGTTACCCTATTG
*
85696188 CTTAGGGCAATAATATCTATAAAC
64 CTTAGGG-AATAAGATCTATAAAC
* * *
85696212 TTCAGCTTGTTACCCTACTACTTTAGGGG
1 TTCAACCTGTTACCCTACTGC-TTAGGGG
85696241 GCCAAAGCTT
Statistics
Matches: 95, Mismatches: 15, Indels: 9
0.80 0.13 0.08
Matches are distributed among these distances:
84 7 0.07
85 25 0.26
86 39 0.41
87 17 0.18
88 7 0.07
ACGTcount: A:0.23, C:0.20, G:0.19, T:0.38
Consensus pattern (86 bp):
TTCAACCTGTTACCCTACTGCTTAGGGGTTAAGGCTTGTCAAAATTGAGCTGTTACCCTATTGCT
TAGGGAATAAGATCTATAAAC
Found at i:85697155 original size:44 final size:43
Alignment explanation
Indices: 85697017--85697168 Score: 137
Period size: 44 Copynumber: 3.5 Consensus size: 43
85697007 TTTTCAGCCA
* * * * *
85697017 TTACCCTACTACTTAGGGGGTTAAGGTCTGTAAATTTGGCTTG
1 TTACCCTACTGCTTAGGGGGTTAAGATCTATAACTTTAGCTTG
* * * *
85697060 TTACCCTACTGCTTAGGGGGTTAA-AGCTCATTA-TCTTCGATCTG
1 TTACCCTACTGCTTAGGGGGTTAAGATCT-ATAACT-TTAGCT-TG
* * *
85697104 TTTCCCTACTGCTTAGGGTGATAAGATCTATGAACTTTAGCTTG
1 TTACCCTACTGCTTAGGGGGTTAAGATCTAT-AACTTTAGCTTG
*
85697148 TTACCCTATTGCTTAGGGGGT
1 TTACCCTACTGCTTAGGGGGT
85697169 AAAGCTTGTT
Statistics
Matches: 85, Mismatches: 18, Indels: 11
0.75 0.16 0.10
Matches are distributed among these distances:
42 3 0.04
43 29 0.34
44 44 0.52
45 8 0.09
46 1 0.01
ACGTcount: A:0.20, C:0.19, G:0.23, T:0.38
Consensus pattern (43 bp):
TTACCCTACTGCTTAGGGGGTTAAGATCTATAACTTTAGCTTG
Found at i:85697189 original size:87 final size:87
Alignment explanation
Indices: 85697020--85697205 Score: 230
Period size: 87 Copynumber: 2.1 Consensus size: 87
85697010 TCAGCCATTA
* * * *
85697020 CCCTACTACTTAGGGGGTTAAGGTCTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAA
1 CCCTACTACTTAGGGGGATAAGATCTATAAATTTAGCTTGTTACCCTACTGCTTAGGGGGTTAAA
* *
85697085 GCTCATTATCTTCGATCTGTTT
66 GCTCATTACCTTCGATCTATTT
* * * *
85697107 CCCTACTGCTTAGGGTGATAAGATCTATGAACTTTAGCTTGTTACCCTATTGCTTAGGGGG-TAA
1 CCCTACTACTTAGGGGGATAAGATCTAT-AAATTTAGCTTGTTACCCTACTGCTTAGGGGGTTAA
** * *
85697171 AGCTTGTTGCCTTTGATCTATTT
65 AGCTCATTACCTTCGATCTATTT
85697194 CCCTACTACTTA
1 CCCTACTACTTA
85697206 TAAGGTAAAA
Statistics
Matches: 83, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
87 54 0.65
88 29 0.35
ACGTcount: A:0.20, C:0.20, G:0.21, T:0.38
Consensus pattern (87 bp):
CCCTACTACTTAGGGGGATAAGATCTATAAATTTAGCTTGTTACCCTACTGCTTAGGGGGTTAAA
GCTCATTACCTTCGATCTATTT
Found at i:85709852 original size:3 final size:3
Alignment explanation
Indices: 85709846--85709871 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
85709836 ATATCAAAAC
85709846 TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA
85709872 TAAATGTATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:85722785 original size:42 final size:42
Alignment explanation
Indices: 85722669--85722786 Score: 123
Period size: 42 Copynumber: 2.8 Consensus size: 42
85722659 TGAGATTATG
* * * **
85722669 TGTAAGACCATATCTGGGATATGGCATCGATATGAGACTTTA
1 TGTAAGACCATATCTGGGATATTGCATAGGTATGAGACTCCA
* * *
85722711 TGTAAGA-CATAGCTTGGCTATTGGCATAGGTATGAGA-TCCCA
1 TGTAAGACCATATCTGGGATATT-GCATAGGTATGAGACT-CCA
*
85722753 TGTAAGACCATATCTGGGATATTGCATTGGTATG
1 TGTAAGACCATATCTGGGATATTGCATAGGTATG
85722787 GCACTATGTG
Statistics
Matches: 61, Mismatches: 12, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
41 12 0.20
42 37 0.61
43 12 0.20
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.31
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATTGCATAGGTATGAGACTCCA
Found at i:85722890 original size:20 final size:20
Alignment explanation
Indices: 85722862--85722908 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
85722852 CGATAAAGTT
85722862 TAAGTTGTGAAAGACTATGG
1 TAAGTTGTGAAAGACTATGG
* *
85722882 TATGTTGTGAAAGATTATGG
1 TAAGTTGTGAAAGACTATGG
85722902 TAAGTTG
1 TAAGTTG
85722909 CAAGTTGGTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.32, C:0.02, G:0.30, T:0.36
Consensus pattern (20 bp):
TAAGTTGTGAAAGACTATGG
Found at i:85725706 original size:39 final size:39
Alignment explanation
Indices: 85725647--85725723 Score: 136
Period size: 39 Copynumber: 2.0 Consensus size: 39
85725637 AGTGGCAGTC
*
85725647 TGACAATGTGAGAAAATTATATAAAGGAGGAGGTTTCGA
1 TGACAATGTGAGAAAATTATATAAAGGAGGAGGGTTCGA
*
85725686 TGACGATGTGAGAAAATTATATAAAGGAGGAGGGTTCG
1 TGACAATGTGAGAAAATTATATAAAGGAGGAGGGTTCG
85725724 GTCACCAATG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.39, C:0.05, G:0.31, T:0.25
Consensus pattern (39 bp):
TGACAATGTGAGAAAATTATATAAAGGAGGAGGGTTCGA
Found at i:85727670 original size:23 final size:23
Alignment explanation
Indices: 85727644--85727689 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
85727634 AGCAGAAAGA
85727644 ATTGATCAAAGAAGAAATTAAGG
1 ATTGATCAAAGAAGAAATTAAGG
* * *
85727667 ATTGATTAGATAAGAAATTAAGG
1 ATTGATCAAAGAAGAAATTAAGG
85727690 TTTCTGTTGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.50, C:0.02, G:0.22, T:0.26
Consensus pattern (23 bp):
ATTGATCAAAGAAGAAATTAAGG
Found at i:85728988 original size:27 final size:27
Alignment explanation
Indices: 85728957--85729015 Score: 91
Period size: 27 Copynumber: 2.2 Consensus size: 27
85728947 TAGGTGTAAG
*
85728957 TGATTTTGACAAGCAACTAAGTGTATA
1 TGATTTTGACAAGCAACTAACTGTATA
* *
85728984 TGATTTTGATAAGCAACTAACTGTATG
1 TGATTTTGACAAGCAACTAACTGTATA
85729011 TGATT
1 TGATT
85729016 CGGATTCCCA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.34, C:0.10, G:0.19, T:0.37
Consensus pattern (27 bp):
TGATTTTGACAAGCAACTAACTGTATA
Found at i:85732633 original size:79 final size:82
Alignment explanation
Indices: 85732522--85732706 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
85732512 GCTACTCGTT
* *
85732522 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
85732585 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
85732602 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
85732665 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
85732682 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
85732707 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:85732706 original size:40 final size:40
Alignment explanation
Indices: 85732503--85732706 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
85732493 CGGAATTTAA
** *
85732503 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
85732543 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
85732583 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
85732622 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
85732662 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
85732702 CCGGA
1 CCGGA
85732707 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:85739597 original size:79 final size:81
Alignment explanation
Indices: 85739459--85739643 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
85739449 TTGAATGATG
* *
85739459 TCCGGGCTAAGTCCCAAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGACCCAAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
85739523 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * * **
85739538 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGACCCAAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
85739600 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
85739618 ACCGGGCTATGACCCAAAGGCATTTG
1 TCCGGGCTAAGACCCAAAGGCATTTG
85739644 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 32 0.36
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGACCCAAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:85739650 original size:40 final size:39
Alignment explanation
Indices: 85739459--85739643 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 39
85739449 TTGAATGATG
* * * * *
85739459 TCCGGGCTAAGTCCCAAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
85739499 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
85739539 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
*
85739578 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
85739619 -CCGGGCTATGACCCAAAGGCATTTG
1 TCCGGGCTAAG-CCCGAAGGCATTTG
85739644 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 9 0.07
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:85739665 original size:79 final size:79
Alignment explanation
Indices: 85739512--85739676 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
85739502 GGACTAAGAT
* * **
85739512 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCAAAGGCATTTGAACGAGTTACTAA
*
85739577 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
85739591 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGACCCAAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCAAAGGCATTTGAACGAGTTA-C
* *
85739654 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
85739670 CCGAAGG
1 CCGAAGG
85739677 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCAAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:85742521 original size:27 final size:27
Alignment explanation
Indices: 85742483--85742545 Score: 126
Period size: 27 Copynumber: 2.3 Consensus size: 27
85742473 ATGGTTACAT
85742483 TTCAAACATGCATTATTTTACCTATAA
1 TTCAAACATGCATTATTTTACCTATAA
85742510 TTCAAACATGCATTATTTTACCTATAA
1 TTCAAACATGCATTATTTTACCTATAA
85742537 TTCAAACAT
1 TTCAAACAT
85742546 ACCAAATCTC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.38, C:0.19, G:0.03, T:0.40
Consensus pattern (27 bp):
TTCAAACATGCATTATTTTACCTATAA
Found at i:85745099 original size:27 final size:26
Alignment explanation
Indices: 85745061--85745111 Score: 75
Period size: 27 Copynumber: 1.9 Consensus size: 26
85745051 CGAGGCTGCC
*
85745061 AGATATTGTGACGAAGTCACCAGAAT
1 AGATATTGTGACGAAGCCACCAGAAT
*
85745087 AGATATATGTGACGAGGCCACCAGA
1 AGATAT-TGTGACGAAGCCACCAGA
85745112 TTATAGTGAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 6 0.27
27 16 0.73
ACGTcount: A:0.37, C:0.18, G:0.25, T:0.20
Consensus pattern (26 bp):
AGATATTGTGACGAAGCCACCAGAAT
Found at i:85754890 original size:43 final size:43
Alignment explanation
Indices: 85754731--85754896 Score: 142
Period size: 43 Copynumber: 3.9 Consensus size: 43
85754721 ATAAACTCAT
* * *
85754731 ACAATGCC-ATATCCCAGATATGGTCTTACATGTTAA--CATATA
1 ACAATGCCAATGTCCTAGACATGGTCTTACATG-TAATCCA-ATA
* * * * * * * * *
85754773 TCGATACCACTGTCCTAGACAGGGTCTTACACGAAATCGATTA
1 ACAATGCCAATGTCCTAGACATGGTCTTACATGTAATCCAATA
* * *
85754816 ACGATGCCAATGTCCCAAACATGGTCTTACATGTAATCTCAAT-
1 ACAATGCCAATGTCCTAGACATGGTCTTACATGTAATC-CAATA
85754859 ACAATGCCAATGTCCTAGACATGGTCTTACATGTAATC
1 ACAATGCCAATGTCCTAGACATGGTCTTACATGTAATC
85754897 ACATCTCGAT
Statistics
Matches: 95, Mismatches: 25, Indels: 7
0.75 0.20 0.06
Matches are distributed among these distances:
42 7 0.07
43 85 0.89
44 3 0.03
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.28
Consensus pattern (43 bp):
ACAATGCCAATGTCCTAGACATGGTCTTACATGTAATCCAATA
Found at i:85758526 original size:15 final size:16
Alignment explanation
Indices: 85758506--85758545 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
85758496 TAAATTGGAA
85758506 AAATGAAAAGTT-ATT
1 AAATGAAAAGTTAATT
* *
85758521 AAATGACAATTTAATT
1 AAATGAAAAGTTAATT
85758537 AAATGAAAA
1 AAATGAAAA
85758546 AGAAAACAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
15 10 0.48
16 11 0.52
ACGTcount: A:0.57, C:0.03, G:0.10, T:0.30
Consensus pattern (16 bp):
AAATGAAAAGTTAATT
Found at i:85758787 original size:19 final size:20
Alignment explanation
Indices: 85758751--85758788 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
85758741 CATGGATGAA
*
85758751 TATGTTAGAAATATGAAATT
1 TATGGTAGAAATATGAAATT
85758771 TATGGTAGAAA-ATGAAAT
1 TATGGTAGAAATATGAAAT
85758789 ATTGTTGATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.47, C:0.00, G:0.18, T:0.34
Consensus pattern (20 bp):
TATGGTAGAAATATGAAATT
Found at i:85766439 original size:80 final size:80
Alignment explanation
Indices: 85766276--85766453 Score: 254
Period size: 80 Copynumber: 2.2 Consensus size: 80
85766266 CGGATGGTAA
*
85766276 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTG
*
85766341 TGCGAGTTACTATAT
66 AGCGAGTTACTATAT
*
85766356 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-TCCGGGCTAAGTCCCGAAGGCATTT
* *
85766420 GAGTGAG-TAGCTATGT
65 GAGCGAGTTA-CTATAT
* *
85766436 CC-GGCTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
85766454 TACTTGGTTT
Statistics
Matches: 89, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
79 18 0.20
80 71 0.80
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTG
AGCGAGTTACTATAT
Found at i:85766453 original size:39 final size:40
Alignment explanation
Indices: 85766276--85766420 Score: 256
Period size: 40 Copynumber: 3.6 Consensus size: 40
85766266 CGGATGGTAA
* *
85766276 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
85766316 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
85766356 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
85766396 CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
85766421 AGTGAGTAGC
Statistics
Matches: 102, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
40 101 0.99
41 1 0.01
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:85779395 original size:40 final size:40
Alignment explanation
Indices: 85779152--85779374 Score: 295
Period size: 40 Copynumber: 5.6 Consensus size: 40
85779142 CAGATGATAA
* * *
85779152 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
* * * *
85779192 CCGGGATAAGTCCCAAAGGCATTTGTCCAAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
85779232 CCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTCACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
85779272 CCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
85779312 CCGGGCTAAGTCCCGAAGACATTTGTGCGAGTTACTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
85779352 CCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
85779375 CGAGTGAGTA
Statistics
Matches: 159, Mismatches: 23, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
39 1 0.01
40 158 0.99
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:85787143 original size:40 final size:40
Alignment explanation
Indices: 85787088--85787331 Score: 348
Period size: 40 Copynumber: 6.1 Consensus size: 40
85787078 TCGATGATAA
* * *
85787088 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
85787128 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
85787168 CCGGGTTAAGTCCCAAAGGCATTTGTGCGAGTCACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
85787208 CCGGGCTAAGCCCCGAAGGCAATTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
85787248 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
85787288 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
85787328 CCGG
1 CCGG
85787332 TTAAATCCCT
Statistics
Matches: 184, Mismatches: 18, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 3 0.02
40 181 0.98
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:85789725 original size:27 final size:26
Alignment explanation
Indices: 85789686--85789745 Score: 93
Period size: 27 Copynumber: 2.3 Consensus size: 26
85789676 CCACAAATAT
*
85789686 ATATCTGTTCTGGTGACTTTGTCACA
1 ATATCTGTTCTGGTGACTTCGTCACA
*
85789712 ATATTTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACTTCGTCACA
85789739 ATATCTG
1 ATATCTG
85789746 GCAGCTTCGC
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 7 0.23
27 23 0.77
ACGTcount: A:0.22, C:0.18, G:0.18, T:0.42
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACTTCGTCACA
Found at i:85799591 original size:6 final size:6
Alignment explanation
Indices: 85799573--85799661 Score: 51
Period size: 6 Copynumber: 14.3 Consensus size: 6
85799563 AAGAAACATT
* * *
85799573 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGT ATCAGGTA A-CATA ATCAAA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
*
85799622 ATCAGA ATCA-A TATCAGGTA A-CAGA ATCAAAA ATCAGA AT
1 ATCAGA ATCAGA -ATCA-G-A ATCAGA ATC-AGA ATCAGA AT
85799662 GTGAATGCAA
Statistics
Matches: 65, Mismatches: 7, Indels: 22
0.69 0.07 0.23
Matches are distributed among these distances:
5 6 0.09
6 45 0.69
7 11 0.17
8 2 0.03
9 1 0.02
ACGTcount: A:0.51, C:0.16, G:0.13, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:85799625 original size:31 final size:31
Alignment explanation
Indices: 85799582--85799661 Score: 124
Period size: 31 Copynumber: 2.5 Consensus size: 31
85799572 TATCAGAACT
* *
85799582 AGAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAATATCAGGTAAC
*
85799613 ATAATCAAAATCAGAATCAATATCAGGTAAC
1 AGAATCAAAATCAGAATCAATATCAGGTAAC
85799644 AGAATCAAAAATCAGAAT
1 AGAATC-AAAATCAGAAT
85799662 GTGAATGCAA
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
31 33 0.75
32 11 0.25
ACGTcount: A:0.51, C:0.15, G:0.14, T:0.20
Consensus pattern (31 bp):
AGAATCAAAATCAGAATCAATATCAGGTAAC
Found at i:85799840 original size:27 final size:26
Alignment explanation
Indices: 85799798--85799899 Score: 114
Period size: 27 Copynumber: 3.8 Consensus size: 26
85799788 GCTCAGTTAT
* *
85799798 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
*
85799825 GAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
*
85799851 CAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAGAGCCACCAG-AA
* * *
85799879 CAGATAATATGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
85799900 TTAATAGAAT
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
26 6 0.09
27 51 0.78
28 8 0.12
ACGTcount: A:0.37, C:0.21, G:0.24, T:0.19
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:85800086 original size:22 final size:22
Alignment explanation
Indices: 85800058--85800122 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
85800048 GAAAATACGT
*
85800058 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
85800080 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
* *
85800102 TTGACACAAAGCCTTAATCAG
1 TTGGCACAAAGCCATAATCAG
85800123 AAGGCTTTAA
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 2 0.06
22 31 0.89
23 2 0.06
ACGTcount: A:0.32, C:0.23, G:0.23, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:85800606 original size:27 final size:27
Alignment explanation
Indices: 85800550--85800743 Score: 205
Period size: 27 Copynumber: 7.2 Consensus size: 27
85800540 GGGAAAAATG
* * * *
85800550 GTAATTTTACCCCACAA-GGTATCTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
* * * *
85800576 GTAATTCCACCCTATAGGGGTATTTTA
1 GTAATTCTACCCTACAAGGGTATTTCA
85800603 GTAATTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
*
85800630 GTAATTCTACCCTACAGGGGTATTTC-
1 GTAATTCTACCCTACAAGGGTATTTCA
* *
85800656 GATAATTATACCCTACAAGGGTATTTCG
1 G-TAATTCTACCCTACAAGGGTATTTCA
* * *
85800684 GTAATT-TCACCATACAGGGGTATTTCG
1 GTAATTCT-ACCCTACAAGGGTATTTCA
* *
85800711 GTATTTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
85800738 GTAATT
1 GTAATT
85800744 TTTTAAATTG
Statistics
Matches: 142, Mismatches: 21, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
26 14 0.10
27 126 0.89
28 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.35
Consensus pattern (27 bp):
GTAATTCTACCCTACAAGGGTATTTCA
Found at i:85800744 original size:54 final size:54
Alignment explanation
Indices: 85800549--85800744 Score: 261
Period size: 54 Copynumber: 3.6 Consensus size: 54
85800539 GGGGAAAAAT
* * * * * *
85800549 GGTAATTTTACCCCACAA-GGTATCTCGGTAATTCCACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTTCACCCTACAGGGGTATTTC
* *
85800602 AGTAATTCTACCCTACAAGGGTATTTCAGTAA-TTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTTC-ACCCTACAGGGGTATTTC
* * *
85800656 GATAATTATACCCTACAAGGGTATTTCGGTAATTTCACCATACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTTCACCCTACAGGGGTATTTC
*
85800710 GGTATTTCTACCCTACAAGGGTATTTCGGTAATTT
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTT
85800745 TTTAAATTGA
Statistics
Matches: 124, Mismatches: 16, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
53 17 0.14
54 104 0.84
55 3 0.02
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (54 bp):
GGTAATTCTACCCTACAAGGGTATTTCGGTAATTTCACCCTACAGGGGTATTTC
Found at i:85800757 original size:27 final size:26
Alignment explanation
Indices: 85800725--85800816 Score: 76
Period size: 27 Copynumber: 3.4 Consensus size: 26
85800715 TTCTACCCTA
*
85800725 CAAGGGTATTTCGGTAATTTTTTAAAT
1 CAAGGGTATTT-GGTAATTTTGTAAAT
** **
85800752 TGAGGGTAAAATGGTAATTTTGTAAAT
1 CAAGGGT-ATTTGGTAATTTTGTAAAT
* ** *
85800779 CAATGGTATTTTGGTAATTTTACAAGT
1 CAAGGGTA-TTTGGTAATTTTGTAAAT
85800806 CAAGGGTATTT
1 CAAGGGTATTT
85800817 CAATAATTTT
Statistics
Matches: 49, Mismatches: 14, Indels: 5
0.72 0.21 0.07
Matches are distributed among these distances:
26 4 0.08
27 43 0.88
28 2 0.04
ACGTcount: A:0.32, C:0.05, G:0.22, T:0.41
Consensus pattern (26 bp):
CAAGGGTATTTGGTAATTTTGTAAAT
Found at i:85800823 original size:27 final size:27
Alignment explanation
Indices: 85800765--85800933 Score: 160
Period size: 27 Copynumber: 6.3 Consensus size: 27
85800755 GGGTAAAATG
** * *
85800765 GTAATTTTGTAAATCAATGGTATTTTG
1 GTAATTTTACAAATCAAGGGTATTTTA
* *
85800792 GTAATTTTACAAGTCAAGGGTATTTCA
1 GTAATTTTACAAATCAAGGGTATTTTA
* ** * *
85800819 ATAATTTTACAGGTCGAGGGTATTTCA
1 GTAATTTTACAAATCAAGGGTATTTTA
* * * *
85800846 ATAATTTCACAAATCAGGGGTATTTTG
1 GTAATTTTACAAATCAAGGGTATTTTA
*
85800873 GTAATTTTACAAA-CTAGGGGTATTTTA
1 GTAATTTTACAAATC-AAGGGTATTTTA
* *
85800900 GTAATTTTATAAACCAAGGGTATTTTA
1 GTAATTTTACAAATCAAGGGTATTTTA
85800927 GTAATTT
1 GTAATTT
85800934 GGTAAACTAA
Statistics
Matches: 119, Mismatches: 21, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
26 1 0.01
27 117 0.98
28 1 0.01
ACGTcount: A:0.33, C:0.08, G:0.18, T:0.41
Consensus pattern (27 bp):
GTAATTTTACAAATCAAGGGTATTTTA
Found at i:85800920 original size:81 final size:81
Alignment explanation
Indices: 85800783--85800933 Score: 187
Period size: 81 Copynumber: 1.9 Consensus size: 81
85800773 GTAAATCAAT
* *** *
85800783 GGTATTTTGGTAATTTTACAAGTCAAGGGTATTTCAATAATTTTACAGGTCGAGGGTATTTCAAT
1 GGTATTTTGGTAATTTTACAACTCAAGGGTATTTCAATAATTTTACAAACCAAGGGTATTTCAAT
85800848 AATTTCACAAATCAGG
66 AATTTCACAAATCAGG
* * * * * *
85800864 GGTATTTTGGTAATTTTACAAACT-AGGGGTATTTTAGTAATTTTATAAACCAAGGGTATTTTAG
1 GGTATTTTGGTAATTTTAC-AACTCAAGGGTATTTCAATAATTTTACAAACCAAGGGTATTTCAA
85800928 TAATTT
65 TAATTT
85800934 GGTAAACTAA
Statistics
Matches: 58, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
81 55 0.95
82 3 0.05
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (81 bp):
GGTATTTTGGTAATTTTACAACTCAAGGGTATTTCAATAATTTTACAAACCAAGGGTATTTCAAT
AATTTCACAAATCAGG
Found at i:85808671 original size:47 final size:47
Alignment explanation
Indices: 85808593--85809003 Score: 689
Period size: 47 Copynumber: 8.7 Consensus size: 47
85808583 CCCTTTGGGA
* * * * * *
85808593 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
85808640 CCTGTCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
85808687 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
85808734 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
85808781 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
85808828 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
85808875 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
85808922 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
85808969 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
85809004 AGAATCCTAA
Statistics
Matches: 346, Mismatches: 17, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
46 1 0.00
47 345 1.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:85812297 original size:39 final size:40
Alignment explanation
Indices: 85812180--85812364 Score: 182
Period size: 40 Copynumber: 4.7 Consensus size: 40
85812170 GCTACTCGTT
* *
85812180 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGACCGGATT-TAGTAACTCGCA
* *
85812220 CAATTGCCTTCGGGACTTA-ACCCGGATTTAGTAACTCGCG
1 CAAATGCCTTCGGGACTTAGA-CCGGATTTAGTAACTCGCA
* *
85812260 CAAATGCCTTCGGG-CTTAGACCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGACCGGATTTAGTAACTCGCA
* * * * * *
85812299 CAAATGCCTTC-GGATCTTAGTCCAGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGACCGGATTTAGTAAC-TCGCA
*
85812340 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGACCGGA
85812365 CATCATTCAA
Statistics
Matches: 120, Mismatches: 18, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
38 2 0.02
39 31 0.26
40 74 0.62
41 13 0.11
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGACCGGATTTAGTAACTCGCA
Found at i:85816985 original size:41 final size:40
Alignment explanation
Indices: 85816832--85816978 Score: 156
Period size: 40 Copynumber: 3.6 Consensus size: 40
85816822 TTGAATGATG
* * * *
85816832 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
85816872 TCCGGACTAAGAT-CCGCAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
85816912 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTACTAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA--AA
*
85816954 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
85816979 AACGAGTATC
Statistics
Matches: 89, Mismatches: 13, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
39 1 0.01
40 56 0.63
41 30 0.34
42 2 0.02
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:85825020 original size:40 final size:40
Alignment explanation
Indices: 85824868--85825013 Score: 154
Period size: 40 Copynumber: 3.6 Consensus size: 40
85824858 TTGAATGATG
* * * *
85824868 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
85824908 TCCGGACTAAGAT-CCGAAGGCATTTGTGTGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
85824948 TCCGGGTTAAGTCCCAAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
85824989 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
85825014 AACGAGTAGC
Statistics
Matches: 87, Mismatches: 15, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
39 1 0.01
40 77 0.89
41 9 0.10
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:85833273 original size:17 final size:16
Alignment explanation
Indices: 85833239--85833318 Score: 63
Period size: 16 Copynumber: 4.9 Consensus size: 16
85833229 AAAATAAAAT
* *
85833239 AATAAAATTGAAATGAA
1 AATAAAAAT-AAAAGAA
85833256 AATAAAAATCAAAAGAAA
1 AATAAAAAT-AAAAG-AA
* *
85833274 AAGAAAAATAAAATAA
1 AATAAAAATAAAAGAA
* **
85833290 AATAAAAATAAGACTA
1 AATAAAAATAAAAGAA
85833306 AATAAAAA-AAAAG
1 AATAAAAATAAAAG
85833319 GAGGATTCAA
Statistics
Matches: 51, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
15 3 0.06
16 22 0.43
17 16 0.31
18 10 0.20
ACGTcount: A:0.75, C:0.03, G:0.07, T:0.15
Consensus pattern (16 bp):
AATAAAAATAAAAGAA
Found at i:85833299 original size:6 final size:6
Alignment explanation
Indices: 85833249--85833300 Score: 54
Period size: 6 Copynumber: 9.0 Consensus size: 6
85833239 AATAAAATTG
* * * *
85833249 AAATGA AAATAA AAATCA AAAGAA AAAGAA AAAT-A AAAT-A AAATAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA
85833295 AAATAA
1 AAATAA
85833301 GACTAAATAA
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
5 10 0.25
6 30 0.75
ACGTcount: A:0.79, C:0.02, G:0.06, T:0.13
Consensus pattern (6 bp):
AAATAA
Found at i:85837535 original size:39 final size:40
Alignment explanation
Indices: 85837492--85837574 Score: 143
Period size: 40 Copynumber: 2.1 Consensus size: 40
85837482 GCTACTTGCT
85837492 CAAATGCCTTCGGGAC-TAGCC-CGGTTATAGTAACTCACA
1 CAAATGCCTTCGGGACTTA-CCTCGGTTATAGTAACTCACA
85837531 CAAATGCCTTCGGGACTTACCTCGGTTATAGTAACTCACA
1 CAAATGCCTTCGGGACTTACCTCGGTTATAGTAACTCACA
85837571 CAAA
1 CAAA
85837575 GGTTATAGTA
Statistics
Matches: 42, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
39 18 0.43
40 24 0.57
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTACCTCGGTTATAGTAACTCACA
Found at i:85837580 original size:21 final size:21
Alignment explanation
Indices: 85837554--85837595 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
85837544 GACTTACCTC
85837554 GGTTATAGTAACTCACACAAA
1 GGTTATAGTAACTCACACAAA
*
85837575 GGTTATAGTAACTCGCACAAA
1 GGTTATAGTAACTCACACAAA
85837596 TGCCTTCGGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.40, C:0.19, G:0.17, T:0.24
Consensus pattern (21 bp):
GGTTATAGTAACTCACACAAA
Found at i:85837609 original size:61 final size:61
Alignment explanation
Indices: 85837514--85837635 Score: 219
Period size: 61 Copynumber: 2.0 Consensus size: 61
85837504 GGACTAGCCC
85837514 GGTTATAGTAACTCACACAAATGCCTTCGGGACTTA-CCTCGGTTATAGTAACTCACACAAA
1 GGTTATAGTAACTCACACAAATGCCTTCGGGACTTAGCC-CGGTTATAGTAACTCACACAAA
*
85837575 GGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACACAAA
1 GGTTATAGTAACTCACACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACACAAA
85837636 TGCCTTCGGG
Statistics
Matches: 59, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
61 57 0.97
62 2 0.03
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (61 bp):
GGTTATAGTAACTCACACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACACAAA
Found at i:85837634 original size:40 final size:40
Alignment explanation
Indices: 85837578--85837935 Score: 628
Period size: 40 Copynumber: 9.0 Consensus size: 40
85837568 ACACAAAGGT
*
85837578 TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGT
1 TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
* *
85837618 TATAGTAACTCACACAAATGCCTTCGGGACTTAGCCTGGA
1 TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
85837658 TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
1 TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
85837698 TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
1 TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
*
85837738 TATAGTAACTCGTACAAATGCCTTCGGGACTTAGCCCGGA
1 TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
*
85837778 TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGT
1 TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
* *
85837818 TATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGT
1 TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
*
85837858 TATAGTAACTCACACAAATGCCTTCGGGA-TTAGCCCGGA
1 TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
*
85837897 TATAGTAGCTCGCACAAATGCCTTCGGGACTTAGCCCGG
1 TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
85837936 TTATCATCCA
Statistics
Matches: 303, Mismatches: 14, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
39 36 0.12
40 267 0.88
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
Found at i:85837662 original size:101 final size:100
Alignment explanation
Indices: 85837492--85837675 Score: 325
Period size: 101 Copynumber: 1.8 Consensus size: 100
85837482 GCTACTTGCT
*
85837492 CAAATGCCTTCGGGACTAGCCCGGTTATAGTAACTCACACAAATGCCTTCGGGACTTACCTCGGT
1 CAAATGCCTTCGGGACTAGCCCGGTTATAGTAACTCACACAAATGCCTTCGGGACTTACCTCGGA
85837557 TATAGTAACTCACACAAAGGTTATAGTAACTCGCA
66 TATAGTAACTCACACAAAGGTTATAGTAACTCGCA
85837592 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACACAAATGCCTTCGGGACTTAGCCT-G
1 CAAATGCCTTCGGGAC-TAGCCCGGTTATAGTAACTCACACAAATGCCTTCGGGACTTA-CCTCG
*
85837656 GATATAGTAACTCGCACAAA
64 GATATAGTAACTCACACAAA
85837676 TGCCTTCGGG
Statistics
Matches: 80, Mismatches: 2, Indels: 3
0.94 0.02 0.04
Matches are distributed among these distances:
100 16 0.20
101 61 0.76
102 3 0.04
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (100 bp):
CAAATGCCTTCGGGACTAGCCCGGTTATAGTAACTCACACAAATGCCTTCGGGACTTACCTCGGA
TATAGTAACTCACACAAAGGTTATAGTAACTCGCA
Found at i:85844934 original size:40 final size:40
Alignment explanation
Indices: 85844863--85845130 Score: 457
Period size: 40 Copynumber: 6.7 Consensus size: 40
85844853 GCTACTTGCT
85844863 CAAATGCCTTCGGGAC-TAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
85844902 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
85844942 CAAATGCCTTCGGGACTTAGCTCGGTTATAGTAACTCCCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
85844982 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCCCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
85845022 CAAATGCCTTCGGAACTTAGCCCGGTTATAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
85845062 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
85845102 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
85845131 CATCCAAATA
Statistics
Matches: 216, Mismatches: 12, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
39 16 0.07
40 200 0.93
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:85844986 original size:80 final size:80
Alignment explanation
Indices: 85844830--85845130 Score: 473
Period size: 80 Copynumber: 3.8 Consensus size: 80
85844820 AAACCAAGTA
* * * *
85844830 CCTTCGGAATTTAG-CCGGATATAGCT-ACTTGCTCAAATGCCTTCGGGAC-TAGCCCGGTTATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATA
*
85844892 GTAACTCGCACAAATG
65 GTAACTCACACAAATG
* *
85844908 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCTCGGTTATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
*
85844973 TAACTCCCACAAATG
66 TAACTCACACAAATG
* *
85844988 CCTTCGGGACTTAGCCCGGATATAGTAACTCCCACAAATGCCTTCGGAACTTAGCCCGGTTATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
85845053 TAACTCACACAAATG
66 TAACTCACACAAATG
*
85845068 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
85845131 CATCCAAATA
Statistics
Matches: 205, Mismatches: 15, Indels: 4
0.92 0.07 0.02
Matches are distributed among these distances:
78 13 0.06
79 30 0.15
80 162 0.79
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
TAACTCACACAAATG
Found at i:85850621 original size:47 final size:46
Alignment explanation
Indices: 85850509--85850681 Score: 174
Period size: 46 Copynumber: 3.7 Consensus size: 46
85850499 TCACTTGTGT
* *
85850509 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCGACATTATGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCGACATGATGA
* *
85850555 GAGCCAGTGTAAGACCATGTCTGGGATATGGCATCAGC-A-ATGA-GA
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCGACATGATGA
* ** *
85850600 CGAGTGCTAGTGTAAGACATGTCTAGGACATGCATCAGCCTCAAGATGTA
1 -GA--GCTAGTGTAAGACATGTCTGGGACATGCATCAGCGACATGATG-A
* *
85850650 -AGCCAGTGTAAGACATGTTTGGGACATGCATC
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATC
85850682 GGCTATTAGA
Statistics
Matches: 106, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
45 2 0.02
46 54 0.51
47 26 0.25
48 22 0.21
49 1 0.01
50 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.23
Consensus pattern (46 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCGACATGATGA
Found at i:85850693 original size:46 final size:46
Alignment explanation
Indices: 85850509--85850730 Score: 170
Period size: 46 Copynumber: 4.8 Consensus size: 46
85850499 TCACTTGTGT
* *
85850509 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCGACATT--ATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGC--TATTAGATGA
* * * * *
85850555 GAGCCAGTGTAAGACCATGTCTGGGATATGGCATCAGCAATGAGACGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTATTAGATGA
* * * *
85850603 GTGCTAGTGTAAGACATGTCTAGGACATGCATCAGCCTCA--AGATGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATC-GGCT-ATTAGATG-A
*
85850650 -AGCCAGTGTAAGACATGTTTGGGACATGCATCGGCTATTAGAT--
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTATTAGATGA
* * * *
85850693 GTGTCAGTGTAAGACCGTGTCCGGGACATCGCATCGGC
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
85850731 ACCTAACCCC
Statistics
Matches: 140, Mismatches: 24, Indels: 24
0.74 0.13 0.13
Matches are distributed among these distances:
44 12 0.09
45 14 0.10
46 64 0.46
47 27 0.19
48 23 0.16
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.23
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTATTAGATGA
Found at i:85852646 original size:16 final size:17
Alignment explanation
Indices: 85852620--85852656 Score: 67
Period size: 16 Copynumber: 2.2 Consensus size: 17
85852610 AGAGAGTACC
85852620 ATTAGGGTATTTGATGA
1 ATTAGGGTATTTGATGA
85852637 ATTA-GGTATTTGATGA
1 ATTAGGGTATTTGATGA
85852653 ATTA
1 ATTA
85852657 TCGTGCATGC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 16 0.80
17 4 0.20
ACGTcount: A:0.32, C:0.00, G:0.24, T:0.43
Consensus pattern (17 bp):
ATTAGGGTATTTGATGA
Found at i:85853534 original size:17 final size:17
Alignment explanation
Indices: 85853493--85853535 Score: 77
Period size: 17 Copynumber: 2.5 Consensus size: 17
85853483 AGCATTGATA
*
85853493 CATTGTTAGATGCCACT
1 CATTGTTTGATGCCACT
85853510 CATTGTTTGATGCCACT
1 CATTGTTTGATGCCACT
85853527 CATTGTTTG
1 CATTGTTTG
85853536 TAACATTAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.19, C:0.21, G:0.19, T:0.42
Consensus pattern (17 bp):
CATTGTTTGATGCCACT
Found at i:85859406 original size:30 final size:30
Alignment explanation
Indices: 85859345--85859406 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 30
85859335 TCAATTTTTG
** **
85859345 AGCCTAGGGGCAAAATTTTCATTTTGTCAA
1 AGCCTAGGGGCAAAATGGTCATTTTACCAA
*
85859375 AGCCTTGGGGCAAAATGGTCATTTTACCAA
1 AGCCTAGGGGCAAAATGGTCATTTTACCAA
85859405 AG
1 AG
85859407 ATACGAATAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.29
Consensus pattern (30 bp):
AGCCTAGGGGCAAAATGGTCATTTTACCAA
Found at i:85866577 original size:47 final size:46
Alignment explanation
Indices: 85866509--85866682 Score: 133
Period size: 47 Copynumber: 3.7 Consensus size: 46
85866499 TCATATCTCA
* *
85866509 AGTCGATGCCATATCCTAGACATGGTCTTACAGTGACTGTCATCTTGT
1 AGTCGATGCCATATCCCAGACAT-GTCTTACACTGACTGTCATC-TGT
* * **
85866557 AGTCGATG-CATGTCCCAGACATGACTTACACTAGTACTCGTC-TCAAT
1 AGTCGATGCCATATCCCAGACATGTCTTACACT-G-ACT-GTCATCTGT
* * * * *
85866604 -GTCAATGCCATATCCCAAACATGGTCTTACACTGGCTCTCATAATGT
1 AGTCGATGCCATATCCCAGACAT-GTCTTACACTGACTGTCAT-CTGT
*
85866651 A-TCCGATG-CATGTCCCAGACATGTCTTACACT
1 AGT-CGATGCCATATCCCAGACATGTCTTACACT
85866683 AGCTCACACA
Statistics
Matches: 99, Mismatches: 18, Indels: 20
0.72 0.13 0.15
Matches are distributed among these distances:
45 2 0.02
46 27 0.27
47 41 0.41
48 26 0.26
49 3 0.03
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.30
Consensus pattern (46 bp):
AGTCGATGCCATATCCCAGACATGTCTTACACTGACTGTCATCTGT
Found at i:85866632 original size:94 final size:93
Alignment explanation
Indices: 85866504--85866684 Score: 256
Period size: 94 Copynumber: 1.9 Consensus size: 93
85866494 CTGGATCATA
* * * * * **
85866504 TCTCAAGTCGATGCCATATCCTAGACATGGTCTTACAGTGACTGTCATCTTGTAGT-CGATGCAT
1 TCTCAAGTCAATGCCATATCCCAAACATGGTCTTACACTGACTCTCATAATGTA-TCCGATGCAT
85866568 GTCCCAGACATGACTTACACTAGTACTCG
65 GTCCCAGACATGACTTACACTAGTACTCG
*
85866597 TCTCAATGTCAATGCCATATCCCAAACATGGTCTTACACTGGCTCTCATAATGTATCCGATGCAT
1 TCTCAA-GTCAATGCCATATCCCAAACATGGTCTTACACTGACTCTCATAATGTATCCGATGCAT
*
85866662 GTCCCAGACATGTCTTACACTAG
65 GTCCCAGACATGACTTACACTAG
85866685 CTCACACACA
Statistics
Matches: 77, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
93 7 0.09
94 70 0.91
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.30
Consensus pattern (93 bp):
TCTCAAGTCAATGCCATATCCCAAACATGGTCTTACACTGACTCTCATAATGTATCCGATGCATG
TCCCAGACATGACTTACACTAGTACTCG
Found at i:85873113 original size:58 final size:57
Alignment explanation
Indices: 85873050--85873160 Score: 134
Period size: 58 Copynumber: 1.9 Consensus size: 57
85873040 GCATGAATAT
** **
85873050 AATATGATTTAGGCCTA-ATGGACCATATGAATGTGAATTGGGCCTAGTGGGCCATAAG
1 AATATGAACTAGGCC-AGATGGACCATATGAATAAG-ATTGGGCCTAGTGGGCCATAAG
* * *
85873108 AATATGAACTAGGCCAGATGGCCCATTTGGATAAGATTGGGCCTAGTGGGCCA
1 AATATGAACTAGGCCAGATGGACCATATGAATAAGATTGGGCCTAGTGGGCCA
85873161 GATGTATGTA
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
57 19 0.42
58 26 0.58
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (57 bp):
AATATGAACTAGGCCAGATGGACCATATGAATAAGATTGGGCCTAGTGGGCCATAAG
Found at i:85873122 original size:29 final size:29
Alignment explanation
Indices: 85873050--85873122 Score: 83
Period size: 29 Copynumber: 2.5 Consensus size: 29
85873040 GCATGAATAT
* *
85873050 AATATGATTTAGGCCTAATGGACCATATG
1 AATATGAATTAGGCCTAATGGACCATAAG
* * * *
85873079 AATGTGAATTGGGCCTAGTGGGCCATAAG
1 AATATGAATTAGGCCTAATGGACCATAAG
*
85873108 AATATGAACTAGGCC
1 AATATGAATTAGGCC
85873123 AGATGGCCCA
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.33, C:0.15, G:0.26, T:0.26
Consensus pattern (29 bp):
AATATGAATTAGGCCTAATGGACCATAAG
Found at i:85876050 original size:8 final size:8
Alignment explanation
Indices: 85876037--85876066 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
85876027 TAACGCCCTA
85876037 AAAATCCC
1 AAAATCCC
85876045 AAAATCCC
1 AAAATCCC
85876053 AAAATCCC
1 AAAATCCC
*
85876061 GAAATC
1 AAAATC
85876067 TTAAATTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.50, C:0.33, G:0.03, T:0.13
Consensus pattern (8 bp):
AAAATCCC
Found at i:85877323 original size:16 final size:16
Alignment explanation
Indices: 85877287--85877338 Score: 54
Period size: 16 Copynumber: 3.3 Consensus size: 16
85877277 TATGAATCGG
*
85877287 CAAAA-GCTGAAATGC
1 CAAAATGCTGAAAAGC
* *
85877302 CGAAATG-TCGAAAAGT
1 CAAAATGCT-GAAAAGC
85877318 CAAAATGCTGAAAAGC
1 CAAAATGCTGAAAAGC
85877334 CAAAA
1 CAAAA
85877339 ATTTGGCTAC
Statistics
Matches: 29, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
15 5 0.17
16 23 0.79
17 1 0.03
ACGTcount: A:0.50, C:0.17, G:0.19, T:0.13
Consensus pattern (16 bp):
CAAAATGCTGAAAAGC
Found at i:85877595 original size:29 final size:29
Alignment explanation
Indices: 85877554--85877624 Score: 106
Period size: 29 Copynumber: 2.4 Consensus size: 29
85877544 GCATGAATAT
* *
85877554 AATATGATTTGGGCCTAATGGGCCATATG
1 AATATGAATTGGGCCTAATGGGCCATAAG
* *
85877583 AATGTGAATTGGGCCTAGTGGGCCATAAG
1 AATATGAATTGGGCCTAATGGGCCATAAG
85877612 AATATGAATTGGG
1 AATATGAATTGGG
85877625 GCAGATGGGC
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.30, C:0.11, G:0.31, T:0.28
Consensus pattern (29 bp):
AATATGAATTGGGCCTAATGGGCCATAAG
Found at i:85877633 original size:29 final size:30
Alignment explanation
Indices: 85877554--85877634 Score: 105
Period size: 29 Copynumber: 2.8 Consensus size: 30
85877544 GCATGAATAT
* *
85877554 AATATGATTTGGGCCTA-ATGGGCCATATG
1 AATATGAATTGGGCCTAGATGGGCCATAAG
*
85877583 AATGTGAATTGGGCCTAG-TGGGCCATAAG
1 AATATGAATTGGGCCTAGATGGGCCATAAG
*
85877612 AATATGAATTGGGGC-AGATGGGC
1 AATATGAATTGGGCCTAGATGGGC
85877635 TGTGACAGCC
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
28 2 0.04
29 43 0.96
ACGTcount: A:0.28, C:0.12, G:0.33, T:0.26
Consensus pattern (30 bp):
AATATGAATTGGGCCTAGATGGGCCATAAG
Found at i:85879304 original size:27 final size:27
Alignment explanation
Indices: 85879267--85879415 Score: 185
Period size: 27 Copynumber: 5.6 Consensus size: 27
85879257 TAAATTGTAC
*
85879267 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
85879294 AGCACTAAGTGTGCGAATTGACCATGC
1 AGCACTAAGTGTGCGAATTGACTATGT
*
85879321 GGCACTAAGTGTGCGAGATTGA-TATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* *
85879348 AGCACTAAGTGTGCG-ATTGATTACGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
85879374 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
85879401 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
85879416 GACTCAATAT
Statistics
Matches: 107, Mismatches: 12, Indels: 6
0.86 0.10 0.05
Matches are distributed among these distances:
25 5 0.05
26 19 0.18
27 78 0.73
28 5 0.05
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:85879406 original size:80 final size:81
Alignment explanation
Indices: 85879267--85879415 Score: 210
Period size: 80 Copynumber: 1.9 Consensus size: 81
85879257 TAAATTGTAC
* * *
85879267 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTG
1 AGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTGTGCGAATTGACCATACAGCACTAAGTG
85879332 TGCGAGATTGATATGT
66 TGCGAGATTGATATGT
* * ** * *
85879348 AGCACTAAGTGTGCGA-TTGATTACGTAGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTG
1 AGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTGTGCGAATTGACCATACAGCACTAAGTG
85879412 TGCG
66 TGCG
85879416 GACTCAATAT
Statistics
Matches: 59, Mismatches: 9, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
80 43 0.73
81 16 0.27
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (81 bp):
AGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTGTGCGAATTGACCATACAGCACTAAGTG
TGCGAGATTGATATGT
Found at i:85887016 original size:2 final size:2
Alignment explanation
Indices: 85887003--85887034 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
85886993 GAATGAATAA
*
85887003 AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
85887035 GCATGTACGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:85887215 original size:27 final size:27
Alignment explanation
Indices: 85887178--85887327 Score: 194
Period size: 27 Copynumber: 5.6 Consensus size: 27
85887168 AAAATTGTAC
* *
85887178 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGATTATGT
** *
85887205 AGCACTAAGTGTGCGAATTGACCATGC
1 AGCACTAAGTGTGCGAATTGATTATGT
*
85887232 GGCACTAAGTGTGCGAGATTGATTATGT
1 AGCACTAAGTGTGCGA-ATTGATTATGT
*
85887260 AGCACTAAGTGTGCG-ATTGATTACGT
1 AGCACTAAGTGTGCGAATTGATTATGT
* *
85887286 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGATTATGT
*
85887313 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
85887328 GACTCAATAT
Statistics
Matches: 108, Mismatches: 13, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
26 25 0.23
27 61 0.56
28 22 0.20
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGATTATGT
Found at i:85892311 original size:46 final size:46
Alignment explanation
Indices: 85892207--85892329 Score: 140
Period size: 46 Copynumber: 2.7 Consensus size: 46
85892197 GGTAAGGTGT
** * *
85892207 CGATGCCATGTCCTAGACATGATCTTTTACTGGCTCATATATCAAGT
1 CGATGCCATGTCCTAGACATG-TCTTACACTGGCTCACATATCAAGG
* * *
85892254 CGATGCCATGTCCTAGACATGTCTTACACTGGCTTACATCTCGAGG
1 CGATGCCATGTCCTAGACATGTCTTACACTGGCTCACATATCAAGG
* *
85892300 CTGATG-CATGTCCCAAACATGTCTTACACT
1 C-GATGCCATGTCCTAGACATGTCTTACACT
85892330 AGCCCTTGTC
Statistics
Matches: 66, Mismatches: 9, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
46 41 0.62
47 25 0.38
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.31
Consensus pattern (46 bp):
CGATGCCATGTCCTAGACATGTCTTACACTGGCTCACATATCAAGG
Found at i:85900356 original size:26 final size:27
Alignment explanation
Indices: 85900320--85900380 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
85900310 TAACTTCATA
*
85900320 TATTTAATATA-TTCTCAAATCCAATT
1 TATTTTATATATTTCTCAAATCCAATT
* *
85900346 TATTTTATATATTTCTCTAATTCAATT
1 TATTTTATATATTTCTCAAATCCAATT
85900373 TAATTTTA
1 T-ATTTTA
85900381 GTTAAAACAT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 10 0.33
27 14 0.47
28 6 0.20
ACGTcount: A:0.34, C:0.11, G:0.00, T:0.54
Consensus pattern (27 bp):
TATTTTATATATTTCTCAAATCCAATT
Found at i:85901663 original size:6 final size:6
Alignment explanation
Indices: 85901652--85901681 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
85901642 TGAAAGTCCA
*
85901652 ATACAC ATACAC ATACGC ATACAC ATACAC
1 ATACAC ATACAC ATACAC ATACAC ATACAC
85901682 GCACATGCAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.47, C:0.33, G:0.03, T:0.17
Consensus pattern (6 bp):
ATACAC
Found at i:85905269 original size:24 final size:24
Alignment explanation
Indices: 85905241--85905286 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
85905231 TTATTAAAAC
85905241 GTGATTGATAATTAATCATTAATG
1 GTGATTGATAATTAATCATTAATG
* *
85905265 GTGATTGGTTATTAATCATTAA
1 GTGATTGATAATTAATCATTAA
85905287 ATTTTTTATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.35, C:0.04, G:0.17, T:0.43
Consensus pattern (24 bp):
GTGATTGATAATTAATCATTAATG
Found at i:85905657 original size:13 final size:13
Alignment explanation
Indices: 85905633--85905666 Score: 59
Period size: 13 Copynumber: 2.5 Consensus size: 13
85905623 ATTTTTTTAT
85905633 TATATAATTGTGTG
1 TATAT-ATTGTGTG
85905647 TATATATTGTGTG
1 TATATATTGTGTG
85905660 TATATAT
1 TATATAT
85905667 ATTATATGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 15 0.75
14 5 0.25
ACGTcount: A:0.29, C:0.00, G:0.18, T:0.53
Consensus pattern (13 bp):
TATATATTGTGTG
Found at i:85910570 original size:40 final size:40
Alignment explanation
Indices: 85910501--85910677 Score: 207
Period size: 40 Copynumber: 4.5 Consensus size: 40
85910491 ACCCAAGTAT
*
85910501 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
*
85910540 CTTCGGGTCTTAGCCCAGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
85910580 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* ** * *
85910620 CTTCGGGACACAGCCCGGATATAGCAACTCGCACGATTGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
85910660 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
85910678 TTATCATCCG
Statistics
Matches: 115, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
38 1 0.01
39 13 0.11
40 99 0.86
41 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:85913360 original size:72 final size:72
Alignment explanation
Indices: 85913244--85913445 Score: 214
Period size: 72 Copynumber: 2.8 Consensus size: 72
85913234 CCACATATTT
* * *** *
85913244 TGTAATGCCCAC--ATTCGAGCTACTCACGGGTCTATACACAAAGTCAGCACTTGGACCCCAAAT
1 TGTAATGCCCGCTTATT-GAGCTACTCACGGGTTTATACACAAAGTCAGCACCCAGACCCCAAAG
85913307 CATT-ATCA
65 CATTAAT-A
* **
85913315 TGTAATGCCCGCTTATTGAGCTACTCACGGGTTTATAGACAAAGTCAATACCCAGACCCCAAAGC
1 TGTAATGCCCGCTTATTGAGCTACTCACGGGTTTATACACAAAGTCAGCACCCAGACCCCAAAGC
85913380 ATTAATA
66 ATTAATA
* ** * * *
85913387 TG-ATATGCTCGCTTAGCGAGTTACTCACGGGTTTATACACAAAGTCAGTACCCGGACCC
1 TGTA-ATGCCCGCTTATTGAGCTACTCACGGGTTTATACACAAAGTCAGCACCCAGACCC
85913446 ACATTACATA
Statistics
Matches: 111, Mismatches: 16, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
71 12 0.11
72 94 0.85
73 5 0.05
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (72 bp):
TGTAATGCCCGCTTATTGAGCTACTCACGGGTTTATACACAAAGTCAGCACCCAGACCCCAAAGC
ATTAATA
Found at i:85918378 original size:50 final size:50
Alignment explanation
Indices: 85918303--85918398 Score: 165
Period size: 50 Copynumber: 1.9 Consensus size: 50
85918293 AATGCTTGCA
* * *
85918303 CTCCTCCATCTAATGCATGTTCTTCTCTTGTTACTTCTTCTAGCATTGTG
1 CTCCTCCACCTAATCCACGTTCTTCTCTTGTTACTTCTTCTAGCATTGTG
85918353 CTCCTCCACCTAATCCACGTTCTTCTCTTGTTACTTCTTCTAGCAT
1 CTCCTCCACCTAATCCACGTTCTTCTCTTGTTACTTCTTCTAGCAT
85918399 ATCTCTTGTT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
50 43 1.00
ACGTcount: A:0.15, C:0.32, G:0.09, T:0.44
Consensus pattern (50 bp):
CTCCTCCACCTAATCCACGTTCTTCTCTTGTTACTTCTTCTAGCATTGTG
Found at i:85918408 original size:24 final size:24
Alignment explanation
Indices: 85918376--85918422 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
85918366 TCCACGTTCT
85918376 TCTCTTGTTACTTCTTCTAGCATA
1 TCTCTTGTTACTTCTTCTAGCATA
85918400 TCTCTTGTTACTTCTTCTAGCAT
1 TCTCTTGTTACTTCTTCTAGCAT
85918423 TGTGCTCCTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.15, C:0.26, G:0.09, T:0.51
Consensus pattern (24 bp):
TCTCTTGTTACTTCTTCTAGCATA
Found at i:85918452 original size:74 final size:74
Alignment explanation
Indices: 85918326--85918468 Score: 250
Period size: 74 Copynumber: 1.9 Consensus size: 74
85918316 TGCATGTTCT
* * *
85918326 TCTCTTGTTACTTCTTCTAGCATTGTGCTCCTCCACCTAATCCACGTTCTTCTCTTGTTACTTCT
1 TCTCTTGTTACTTCTTCTAGCATTGTGCTCCTCCACCTAACCCACGTCCTTCTCTTATTACTTCT
85918391 TCTAGCATA
66 TCTAGCATA
*
85918400 TCTCTTGTTACTTCTTCTAGCATTGTGCTCCTCCACCTAACCCATGTCCTTCTCTTATTACTTCT
1 TCTCTTGTTACTTCTTCTAGCATTGTGCTCCTCCACCTAACCCACGTCCTTCTCTTATTACTTCT
85918465 TCTA
66 TCTA
85918469 AGAAATATTC
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
74 65 1.00
ACGTcount: A:0.15, C:0.32, G:0.08, T:0.45
Consensus pattern (74 bp):
TCTCTTGTTACTTCTTCTAGCATTGTGCTCCTCCACCTAACCCACGTCCTTCTCTTATTACTTCT
TCTAGCATA
Found at i:85921496 original size:38 final size:38
Alignment explanation
Indices: 85921445--85921519 Score: 150
Period size: 38 Copynumber: 2.0 Consensus size: 38
85921435 GCCCATTGCA
85921445 GTGGGGATAAAATCAACCCACCCATCCCTACACTCCAT
1 GTGGGGATAAAATCAACCCACCCATCCCTACACTCCAT
85921483 GTGGGGATAAAATCAACCCACCCATCCCTACACTCCA
1 GTGGGGATAAAATCAACCCACCCATCCCTACACTCCA
85921520 AGTAGCACTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.32, C:0.37, G:0.13, T:0.17
Consensus pattern (38 bp):
GTGGGGATAAAATCAACCCACCCATCCCTACACTCCAT
Found at i:85927669 original size:16 final size:16
Alignment explanation
Indices: 85927630--85927661 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
85927620 TTAACAGATA
85927630 GAGGTTTTGCTTTACC
1 GAGGTTTTGCTTTACC
85927646 GAGGTTTTGCTTTACC
1 GAGGTTTTGCTTTACC
85927662 TATTTTTTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.19, G:0.25, T:0.44
Consensus pattern (16 bp):
GAGGTTTTGCTTTACC
Found at i:85934840 original size:27 final size:27
Alignment explanation
Indices: 85934802--85935355 Score: 554
Period size: 27 Copynumber: 20.7 Consensus size: 27
85934792 TAATAAAGAG
*
85934802 AAATTACCGAAATA-CCTCCGGTTTGTA
1 AAATTACCGAAATACCCT-CGATTTGTA
*
85934829 AAATTACCGAAATACCTTC-AGTTTGTA
1 AAATTACCGAAATACCCTCGA-TTTGTA
* *
85934856 AAATTACC-AAAAACCCT-AATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
*
85934881 AAATTATCGAAATACCCTCGATTATG--
1 AAATTACCGAAATACCCTCGATT-TGTA
**
85934907 AAATTATTGAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
85934934 AAATTATCGAAACACCCTCGATTTGTG
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
85934961 AAATTATCGAAACACCCTCAATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * * *
85934988 AAATTACCAAAACACGCTTGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
85935015 AAATTACC-AAAGCACCCTTGATTTGTA
1 AAATTACCGAAA-TACCCTCGATTTGTA
**
85935042 AAATTACTAAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
85935069 AAATT-CTCGAAATACCCTC-AATTGTG
1 AAATTAC-CGAAATACCCTCGATTTGTA
* * *
85935095 AAAGTACTGAAATATCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
85935122 AAATTACCAAAATGCCCTCGATTTGTG
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
85935149 AAATTACTGAAACACCCTCGATTTTTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
85935176 CAATTATCGAAACACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
85935203 AAATTACCGAAACACCCTGGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
85935230 AAATTACC-ATAATACCCTCGATTTGTA
1 AAATTACCGA-AATACCCTCGATTTGTA
* *
85935257 AAATTACCAAAATACCCTCAATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
85935284 AAATTATCGAAACACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
85935311 AAATTATCGAAATACCCTTG-TAGTGTA
1 AAATTACCGAAATACCCTCGAT-TTGTA
* *
85935338 AAATGACCGACATACCCT
1 AAATTACCGAAATACCCT
85935356 TGTAGGGTAA
Statistics
Matches: 448, Mismatches: 63, Indels: 32
0.83 0.12 0.06
Matches are distributed among these distances:
25 15 0.03
26 63 0.14
27 362 0.81
28 8 0.02
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.31
Consensus pattern (27 bp):
AAATTACCGAAATACCCTCGATTTGTA
Found at i:85935356 original size:27 final size:27
Alignment explanation
Indices: 85935307--85935368 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
85935297 ACCCTCGATT
* *
85935307 TGTAAAATTATCGAAATACCCTTGTAG
1 TGTAAAATGACCGAAATACCCTTGTAG
*
85935334 TGTAAAATGACCGACATACCCTTGTAG
1 TGTAAAATGACCGAAATACCCTTGTAG
*
85935361 GGTAAAAT
1 TGTAAAAT
85935369 AACTGTTTTG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.29
Consensus pattern (27 bp):
TGTAAAATGACCGAAATACCCTTGTAG
Found at i:85940464 original size:24 final size:24
Alignment explanation
Indices: 85940412--85940457 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
85940402 TCACCTTGTA
*
85940412 AGAGCTTACTATTCTCAGCTCGTC
1 AGAGCATACTATTCTCAGCTCGTC
85940436 AGAGCATACTATT-TCTAGCTCG
1 AGAGCATACTATTCTC-AGCTCG
85940458 ATAGAGCTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 2 0.10
24 18 0.90
ACGTcount: A:0.24, C:0.26, G:0.17, T:0.33
Consensus pattern (24 bp):
AGAGCATACTATTCTCAGCTCGTC
Found at i:85949216 original size:23 final size:23
Alignment explanation
Indices: 85949184--85949243 Score: 102
Period size: 23 Copynumber: 2.6 Consensus size: 23
85949174 TGTCCCAAAA
*
85949184 CACATGGGCGTGTGCATTGCCTC
1 CACACGGGCGTGTGCATTGCCTC
*
85949207 CATACGGGCGTGTGCATTGCCTC
1 CACACGGGCGTGTGCATTGCCTC
85949230 CACACGGGCGTGTG
1 CACACGGGCGTGTG
85949244 AGGCTTATCC
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.13, C:0.30, G:0.33, T:0.23
Consensus pattern (23 bp):
CACACGGGCGTGTGCATTGCCTC
Found at i:85954262 original size:24 final size:24
Alignment explanation
Indices: 85954225--85954295 Score: 88
Period size: 24 Copynumber: 3.0 Consensus size: 24
85954215 TACCGATATA
* * *
85954225 TCAGCTCATAAGAGCTTACTGTTC
1 TCAGCTCGTCAGAGTTTACTGTTC
*
85954249 TTAGCTCGTCAGAGTTTACTGTTC
1 TCAGCTCGTCAGAGTTTACTGTTC
* *
85954273 TCCGGTCGTCAGAGTTTACTGTT
1 TCAGCTCGTCAGAGTTTACTGTT
85954296 ACTAGATCGA
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 40 1.00
ACGTcount: A:0.18, C:0.23, G:0.21, T:0.38
Consensus pattern (24 bp):
TCAGCTCGTCAGAGTTTACTGTTC
Found at i:85954539 original size:20 final size:20
Alignment explanation
Indices: 85954497--85954539 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
85954487 TGCTATACGG
* *
85954497 ATGAATTGTTGGTTATTTAA
1 ATGAATTGTTGATTATATAA
*
85954517 ATGAATTGTTGATTATATGA
1 ATGAATTGTTGATTATATAA
85954537 ATG
1 ATG
85954540 TGAATGAATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.47
Consensus pattern (20 bp):
ATGAATTGTTGATTATATAA
Found at i:85961188 original size:27 final size:26
Alignment explanation
Indices: 85961150--85961228 Score: 97
Period size: 27 Copynumber: 3.0 Consensus size: 26
85961140 CCTAATTTGA
*
85961150 TGAAATGACTATTTTGTCCTTATGTGG
1 TGAAATGACTATTTTG-CCCTATGTGG
**
85961177 TGAAATGACTATTTTGCCCTACATGG
1 TGAAATGACTATTTTGCCCTATGTGG
85961203 T-AAATTGACTATTTTGCCCCTATGTG
1 TGAAA-TGACTATTTTG-CCCTATGTG
85961229 AAGTATTTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
25 3 0.07
26 19 0.42
27 23 0.51
ACGTcount: A:0.24, C:0.16, G:0.19, T:0.41
Consensus pattern (26 bp):
TGAAATGACTATTTTGCCCTATGTGG
Found at i:85961211 original size:26 final size:26
Alignment explanation
Indices: 85961150--85961221 Score: 92
Period size: 26 Copynumber: 2.7 Consensus size: 26
85961140 CCTAATTTGA
* **
85961150 TGAAATGACTATTTTGTCCTTATGTGG
1 TGAAATGACTATTTTG-CCCTACATGG
85961177 TGAAATGACTATTTTGCCCTACATGG
1 TGAAATGACTATTTTGCCCTACATGG
85961203 T-AAATTGACTATTTTGCCC
1 TGAAA-TGACTATTTTGCCC
85961222 CTATGTGAAG
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
25 3 0.07
26 22 0.54
27 16 0.39
ACGTcount: A:0.25, C:0.17, G:0.18, T:0.40
Consensus pattern (26 bp):
TGAAATGACTATTTTGCCCTACATGG
Found at i:85968095 original size:23 final size:22
Alignment explanation
Indices: 85968068--85968194 Score: 130
Period size: 23 Copynumber: 5.6 Consensus size: 22
85968058 AGTCCCGGTA
85968068 AGAGCTTACTGTTTCAGCTCATT
1 AGAGCTTACTGTTTCAGCTCA-T
* * * *
85968091 GGAGCTTACCGTTTCAACTCGT
1 AGAGCTTACTGTTTCAGCTCAT
85968113 ATGAGCTTACTG-TTCAGCTCGAT
1 A-GAGCTTACTGTTTCAGCTC-AT
* * *
85968136 AGAGCTTACCGTTTCAGGTTAAT
1 AGAGCTTACTGTTTCA-GCTCAT
*
85968159 AGAGCTTACTGATTCAGCTCGAT
1 AGAGCTTACTGTTTCAGCTC-AT
85968182 AGAGCTTACTGTT
1 AGAGCTTACTGTT
85968195 CATCAACTTA
Statistics
Matches: 83, Mismatches: 16, Indels: 10
0.76 0.15 0.09
Matches are distributed among these distances:
22 19 0.23
23 62 0.75
24 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.35
Consensus pattern (22 bp):
AGAGCTTACTGTTTCAGCTCAT
Found at i:85968187 original size:68 final size:68
Alignment explanation
Indices: 85968068--85968196 Score: 170
Period size: 68 Copynumber: 1.9 Consensus size: 68
85968058 AGTCCCGGTA
* * * *
85968068 AGAGCTTACTGTTTCAGCTCATTGGAGCTTACCGTTTCAACTCGTATGAGCTTACTGTTCAGCTC
1 AGAGCTTACCGTTTCAGCTCAATAGAGCTTACCGATTCAACTCGTATGAGCTTACTGTTCAGCTC
85968133 GAT
66 GAT
* * * *
85968136 AGAGCTTACCGTTTCAGGTTAATAGAGCTTACTGATTCAGCTCG-ATAGAGCTTACTGTTCA
1 AGAGCTTACCGTTTCAGCTCAATAGAGCTTACCGATTCAACTCGTAT-GAGCTTACTGTTCA
85968197 TCAACTTAGG
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
67 2 0.04
68 50 0.96
ACGTcount: A:0.23, C:0.22, G:0.21, T:0.34
Consensus pattern (68 bp):
AGAGCTTACCGTTTCAGCTCAATAGAGCTTACCGATTCAACTCGTATGAGCTTACTGTTCAGCTC
GAT
Found at i:85979782 original size:40 final size:40
Alignment explanation
Indices: 85979726--85979956 Score: 299
Period size: 40 Copynumber: 5.8 Consensus size: 40
85979716 TGGATGATAA
* * ** * *
85979726 CCGGGCTATGT-CCGAAGGCATCTGCACTAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
85979765 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAAT
*
85979806 -CGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
85979845 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* * *
85979885 CCGGGCTAAGTCCCAAAGGCAATTGTGCGAGTTACTCTAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAAT
*
85979925 CCGGGCTATGTCCCGAAGGCATTTAG-GCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTT-GTGCGAGT
85979957 AGTTATATCC
Statistics
Matches: 171, Mismatches: 16, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
39 13 0.08
40 151 0.88
41 7 0.04
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:85987940 original size:40 final size:40
Alignment explanation
Indices: 85987881--85988112 Score: 288
Period size: 40 Copynumber: 5.8 Consensus size: 40
85987871 TGGATGATAA
* ** * *
85987881 CCGGGCTAAGTCCCGAAGGCATCTGCACTAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* * *
85987921 CTGGGCTAAGTCTCAAAGGCATTTGTGCGAGTTACTAAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAAT
* *
85987962 -CGAGCTAAGTCCCGAAGGCATTTGTGCGAATTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
85988001 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* * *
85988041 CCGGGCTAAGTCCCAAAGGCAATTGTGCGAGTTACTCTAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAAT
* * *
85988081 CCGGGCTATGTCCTGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
85988113 AGTTATATCC
Statistics
Matches: 166, Mismatches: 23, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
39 4 0.02
40 156 0.94
41 6 0.04
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:85988099 original size:120 final size:120
Alignment explanation
Indices: 85987881--85988110 Score: 325
Period size: 120 Copynumber: 1.9 Consensus size: 120
85987871 TGGATGATAA
* * * *
85987881 CCGGGCTAAGTCCCGAAGGCATCTGCACTAGTGACTAAATCTGGGCTAAGTCTCAAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATCTGCACGAGTGACTAAATCCGGGCTAAGTCCCAAAGGCAATTG
* *
85987946 TGCGAGTTACTAAAATCGAGCTAAGTCCCGAAGGCATTTGTGCGAATTACTAAAT
66 TGCGAGTTACTAAAACCGAGCTAAGTCCCGAAGGCATTTGAGCGAATTACTAAAT
* ** *
85988001 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCAAAGGCAATTG
1 CCGGGCTAAGTCCCGAAGGCATCTGCACGAGTGACTAAATCCGGGCTAAGTCCCAAAGGCAATTG
** * * *
85988066 TGCGAGTTACTCTAACCGGGCTATGTCCTGAAGGCATTTGAGCGA
66 TGCGAGTTACTAAAACCGAGCTAAGTCCCGAAGGCATTTGAGCGA
85988111 GTAGTTATAT
Statistics
Matches: 95, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
120 95 1.00
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (120 bp):
CCGGGCTAAGTCCCGAAGGCATCTGCACGAGTGACTAAATCCGGGCTAAGTCCCAAAGGCAATTG
TGCGAGTTACTAAAACCGAGCTAAGTCCCGAAGGCATTTGAGCGAATTACTAAAT
Found at i:85990308 original size:64 final size:64
Alignment explanation
Indices: 85990207--85990346 Score: 226
Period size: 64 Copynumber: 2.2 Consensus size: 64
85990197 ACCACACATG
* * * *
85990207 CAACCTAGCTACATTTATCTCGTAGCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATA
1 CAACCTAGCTACATATATCCCATAGCTCTCTTATCTACATGGTGTACACATAGTATCACCCATA
*
85990271 CAACCTAGCTACATATATCCCATAGCTCTCTTATCTACATGGTGTACACATAGTATCACCCATG
1 CAACCTAGCTACATATATCCCATAGCTCTCTTATCTACATGGTGTACACATAGTATCACCCATA
*
85990335 CGACCTAGCTAC
1 CAACCTAGCTAC
85990347 CTCATAATGT
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
64 70 1.00
ACGTcount: A:0.28, C:0.30, G:0.12, T:0.30
Consensus pattern (64 bp):
CAACCTAGCTACATATATCCCATAGCTCTCTTATCTACATGGTGTACACATAGTATCACCCATA
Found at i:85993766 original size:28 final size:28
Alignment explanation
Indices: 85993708--85993810 Score: 134
Period size: 28 Copynumber: 3.7 Consensus size: 28
85993698 ATTGCATGAC
* *
85993708 TATGAATGTGATTGGGCCAGACGTGCCA
1 TATGAATGTGATTGGGCCTGACGGGCCA
* * * *
85993736 TATAAAAGTGATTGGGCCTGATGGGCTA
1 TATGAATGTGATTGGGCCTGACGGGCCA
* *
85993764 TATGAATGTGATTAGGCCTGAGGGGCCA
1 TATGAATGTGATTGGGCCTGACGGGCCA
85993792 TATGAATGTGATTGGGCCT
1 TATGAATGTGATTGGGCCT
85993811 AAAGGGGCCA
Statistics
Matches: 63, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 63 1.00
ACGTcount: A:0.25, C:0.14, G:0.33, T:0.28
Consensus pattern (28 bp):
TATGAATGTGATTGGGCCTGACGGGCCA
Found at i:85997267 original size:31 final size:31
Alignment explanation
Indices: 85997222--85997288 Score: 98
Period size: 31 Copynumber: 2.2 Consensus size: 31
85997212 TCAAAATGAG
*
85997222 AATCAGAATCAGAATCAGGTGACAGAATCAA
1 AATCAAAATCAGAATCAGGTGACAGAATCAA
* * *
85997253 AATCAAAATTAGAATTAGGTGACAGAATCAG
1 AATCAAAATCAGAATCAGGTGACAGAATCAA
85997284 AATCA
1 AATCA
85997289 GATGATTTAT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.49, C:0.13, G:0.18, T:0.19
Consensus pattern (31 bp):
AATCAAAATCAGAATCAGGTGACAGAATCAA
Done.