Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 250 of 295
Found at i:86001062 original size:24 final size:22
Alignment explanation
Indices: 86001016--86001062 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 22
86001006 ATAGACATGA
*
86001016 GATAAGAGAATTTTAGTGTTTT
1 GATAAGAGAATTTTAGTGATTT
*
86001038 GATAAGAGTGAATTTTGGTGATTT
1 GATAAGA--GAATTTTAGTGATTT
86001062 G
1 G
86001063 GTAATTAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 7 0.33
24 14 0.67
ACGTcount: A:0.30, C:0.00, G:0.28, T:0.43
Consensus pattern (22 bp):
GATAAGAGAATTTTAGTGATTT
Found at i:86003212 original size:26 final size:26
Alignment explanation
Indices: 86003166--86003218 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
86003156 TCAAACATGC
*
86003166 ATTTAGGTCAATTTAACCCTAGGGGT
1 ATTTAGGTCAATTTAACCCTAAGGGT
* *
86003192 ATTTCGGT-AATTTATCTCCTAAGGGT
1 ATTTAGGTCAATTTAAC-CCTAAGGGT
86003218 A
1 A
86003219 AAACTATAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACCCTAAGGGT
Found at i:86009225 original size:47 final size:47
Alignment explanation
Indices: 86009156--86009245 Score: 171
Period size: 47 Copynumber: 1.9 Consensus size: 47
86009146 CCGCAGTAAG
*
86009156 GACACTGCCCCTTTTAACTTTTGCTCCACTGAGTAGTCTAGGTTAAA
1 GACACTGCCCCTTTTAACTTTTGCTCCACTGAGCAGTCTAGGTTAAA
86009203 GACACTGCCCCTTTTAACTTTTGCTCCACTGAGCAGTCTAGGT
1 GACACTGCCCCTTTTAACTTTTGCTCCACTGAGCAGTCTAGGT
86009246 CATCCATAAT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 42 1.00
ACGTcount: A:0.21, C:0.28, G:0.18, T:0.33
Consensus pattern (47 bp):
GACACTGCCCCTTTTAACTTTTGCTCCACTGAGCAGTCTAGGTTAAA
Found at i:86011753 original size:40 final size:40
Alignment explanation
Indices: 86011679--86011859 Score: 251
Period size: 40 Copynumber: 4.6 Consensus size: 40
86011669 AACCCAAGTA
* *
86011679 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* * *
86011718 CCTTCGGGTCTTAGCCTGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
86011758 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAACTG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
86011798 CCTTCGAGACTTAGCCCGGATATAGTCACTAGCAC-CATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
86011837 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
86011860 CATCCGAATA
Statistics
Matches: 125, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
39 36 0.29
40 88 0.70
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:86020109 original size:40 final size:40
Alignment explanation
Indices: 86020035--86020255 Score: 297
Period size: 40 Copynumber: 5.6 Consensus size: 40
86020025 AACCCAAGTA
* *
86020035 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* * *
86020074 CCTTCGGGTCTTAGCACGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* **
86020114 CCTTCGGGACTTAGCCCGGATATAG-CAACTCGCACAAACA
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
86020154 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAACTG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
86020194 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCAC-CATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
86020233 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
86020256 CATCCGAATA
Statistics
Matches: 160, Mismatches: 18, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
39 38 0.24
40 120 0.75
41 2 0.01
ACGTcount: A:0.27, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:86027865 original size:28 final size:27
Alignment explanation
Indices: 86027804--86027867 Score: 101
Period size: 28 Copynumber: 2.3 Consensus size: 27
86027794 ATTTACTAAA
* *
86027804 ATACCCCTAAGTATGACAATTACCATT
1 ATACCCCTAAGTATGAAAATGACCATT
86027831 ATACCCCTAAGTATGTAAAATGACCATT
1 ATACCCCTAAGTATG-AAAATGACCATT
86027859 ATACCCCTA
1 ATACCCCTA
86027868 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
27 15 0.44
28 19 0.56
ACGTcount: A:0.38, C:0.27, G:0.08, T:0.28
Consensus pattern (27 bp):
ATACCCCTAAGTATGAAAATGACCATT
Found at i:86028042 original size:27 final size:26
Alignment explanation
Indices: 86027970--86028085 Score: 133
Period size: 27 Copynumber: 4.3 Consensus size: 26
86027960 ATGGAGGAAG
86027970 TGTTCTGGTGGCTATGCCACAATTATC
1 TGTTCTGGTGGCTATGCCACAA-TATC
* *
86027997 TATTTCTAGTGGCTATGCCACAGATATC
1 T-GTTCTGGTGGCTATGCCACA-ATATC
*
86028025 TGTTCTGGTGGCTCTGCCACAATATC
1 TGTTCTGGTGGCTATGCCACAATATC
* * *
86028051 TGTATCTGGTGACTCTGTCACAATATC
1 TGT-TCTGGTGGCTATGCCACAATATC
*
86028078 TATTCTGG
1 TGTTCTGG
86028086 CAGCCATGCT
Statistics
Matches: 78, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
26 13 0.17
27 41 0.53
28 23 0.29
29 1 0.01
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.37
Consensus pattern (26 bp):
TGTTCTGGTGGCTATGCCACAATATC
Found at i:86037659 original size:42 final size:41
Alignment explanation
Indices: 86037590--86037708 Score: 148
Period size: 43 Copynumber: 2.8 Consensus size: 41
86037580 TAGGGTTATT
86037590 TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCAATA
1 TGAGATT-CGTGTAAGACCATATCTGGGATATGGCATCAATA
* * **
86037632 TGAGGATTCGTGTAAGACCATAGCTGGGCTATTGGCATTGATA
1 TGA-GATTCGTGTAAGACCATATCTGGGATA-TGGCATCAATA
* *
86037675 TGAGATCCCATGTAAGACCATATCTGGGATATGG
1 TGAGAT-TCGTGTAAGACCATATCTGGGATATGG
86037709 TGTAATAGCC
Statistics
Matches: 66, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
42 30 0.45
43 36 0.55
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (41 bp):
TGAGATTCGTGTAAGACCATATCTGGGATATGGCATCAATA
Found at i:86038998 original size:42 final size:42
Alignment explanation
Indices: 86038936--86039091 Score: 188
Period size: 42 Copynumber: 3.7 Consensus size: 42
86038926 ACTAAGACTA
* * *
86038936 CGTGTAATACCATATTTGGGATATGGCATCAATATGAGATTT
1 CGTGTAAGACCATATCTGGGATATGGCATCGATATGAGATTT
* * *
86038978 TGTGTAAGACTATATCTGGGATATGGCATCGATATGAGACTT
1 CGTGTAAGACCATATCTGGGATATGGCATCGATATGAGATTT
* * * *
86039020 CGTGTAAGACCATAGCT-AGACTATTGGCATCGATACGAGATTA
1 CGTGTAAGACCATATCTGGGA-TA-TGGCATCGATATGAGATTT
*
86039063 CATGTAAGACCATATCTGGGATATGGCAT
1 CGTGTAAGACCATATCTGGGATATGGCAT
86039092 TGGTACGGTA
Statistics
Matches: 95, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
41 2 0.02
42 58 0.61
43 33 0.35
44 2 0.02
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.31
Consensus pattern (42 bp):
CGTGTAAGACCATATCTGGGATATGGCATCGATATGAGATTT
Found at i:86050411 original size:45 final size:45
Alignment explanation
Indices: 86050348--86050439 Score: 123
Period size: 45 Copynumber: 2.0 Consensus size: 45
86050338 ATGCTATCTC
*
86050348 ATATCGATGCCACTGTCCCAGACAG-GGTCTTACACAAAAACACAT
1 ATATCGATGCCAATGTCCCAGAC-GTGGTCTTACACAAAAACACAT
* * * *
86050393 ATATCGATTCCAATGTCCCAGACGTGGTCTTCCACATAAGCACAT
1 ATATCGATGCCAATGTCCCAGACGTGGTCTTACACAAAAACACAT
86050438 AT
1 AT
86050440 CGAAATCCTA
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
44 1 0.02
45 40 0.98
ACGTcount: A:0.33, C:0.28, G:0.15, T:0.24
Consensus pattern (45 bp):
ATATCGATGCCAATGTCCCAGACGTGGTCTTACACAAAAACACAT
Found at i:86052035 original size:49 final size:49
Alignment explanation
Indices: 86051808--86052045 Score: 246
Period size: 49 Copynumber: 4.8 Consensus size: 49
86051798 TAGCCGAAGC
* *
86051808 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCAACCAAT
* * * * * * ** *
86051857 TATCCGATACACGTAGTAGCATGCACTTAGTACTATACACGTGACCTAAC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCAACC-AAT
* * * * *
86051907 CATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTG-ATCGAAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA--TGCAACCAA-T
* *
86051958 TAT-TAGGTACGCATAGTAGCCTGCACTTATTACTACACATGCAACCAAT
1 TATCT-GGTACACATAGTAGCCTGCACTTAGTACTACACATGCAACCAAT
*
86052007 TATCTGGTACACATAGTAGCCAGCACTTAGTACTACACA
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
86052046 CGTGACCTCA
Statistics
Matches: 154, Mismatches: 28, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
49 75 0.49
50 45 0.29
51 33 0.21
52 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCAACCAAT
Found at i:86053573 original size:15 final size:15
Alignment explanation
Indices: 86053550--86053580 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
86053540 TCAAAAATTC
86053550 CAATACAAAACATAT
1 CAATACAAAACATAT
*
86053565 CAATCCAAAACATAT
1 CAATACAAAACATAT
86053580 C
1 C
86053581 TTTCATATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.26, G:0.00, T:0.19
Consensus pattern (15 bp):
CAATACAAAACATAT
Found at i:86062160 original size:27 final size:26
Alignment explanation
Indices: 86062112--86062190 Score: 77
Period size: 27 Copynumber: 3.0 Consensus size: 26
86062102 GCGAGGCTGC
*
86062112 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
86062139 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* **
86062165 CAGATATATATGTGGAAGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
86062191 TTGCAGCGAG
Statistics
Matches: 42, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
26 8 0.19
27 34 0.81
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.20
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:86062228 original size:67 final size:67
Alignment explanation
Indices: 86062139--86062276 Score: 179
Period size: 67 Copynumber: 2.1 Consensus size: 67
86062129 TCACCAGATA
* * * *
86062139 CAGATATTGTGGCTAGGCCACCAGAACAGATATATATGTG-GAAGCCACCAGATTGCAGCGAGTA
1 CAGATATTGTGACGAAGCCACCAGAACAGATATATATG-GCGAAGCCACCAGATTGCAGCGAGGA
86062203 TGC
65 TGC
* * * * *
86062206 CAGATATTGTGACGAAGTCACCAGAATAGATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCT
1 CAGATATTGTGACGAAGCCACCAGAACAGATATATATGGCGAAGCCACCAGATTGCAGCGAGGAT
86062271 GC
66 GC
86062273 CAGA
1 CAGA
86062277 ACGCTTCCTC
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
66 1 0.02
67 60 0.98
ACGTcount: A:0.31, C:0.21, G:0.28, T:0.20
Consensus pattern (67 bp):
CAGATATTGTGACGAAGCCACCAGAACAGATATATATGGCGAAGCCACCAGATTGCAGCGAGGAT
GC
Found at i:86062254 original size:27 final size:26
Alignment explanation
Indices: 86062207--86062257 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
86062197 CGAGTATGCC
*
86062207 AGATATTGTGACGAAGTCACCAGAAT
1 AGATATTGTGACGAAGCCACCAGAAT
* *
86062233 AGATATATGTGGCGAGGCCACCAGA
1 AGATAT-TGTGACGAAGCCACCAGA
86062258 TTGCAGCGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.35, C:0.18, G:0.27, T:0.20
Consensus pattern (26 bp):
AGATATTGTGACGAAGCCACCAGAAT
Found at i:86068237 original size:24 final size:24
Alignment explanation
Indices: 86068201--86068248 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
86068191 AAACATATTA
* *
86068201 AATGTCTATTCAAATGACTTATGT
1 AATGTCTACTCAAATGAATTATGT
86068225 AATGTCTACTCAAATGAATTATGT
1 AATGTCTACTCAAATGAATTATGT
86068249 GCAGACTTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.40
Consensus pattern (24 bp):
AATGTCTACTCAAATGAATTATGT
Found at i:86082896 original size:18 final size:17
Alignment explanation
Indices: 86082862--86082900 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
86082852 TTAGTGTTTG
* *
86082862 AATGATTAATTTGATAA
1 AATGACTAAATTGATAA
86082879 AATGACTAAATTGCATAA
1 AATGACTAAATTG-ATAA
86082897 AATG
1 AATG
86082901 CAAAAGTGGC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.49, C:0.05, G:0.13, T:0.33
Consensus pattern (17 bp):
AATGACTAAATTGATAA
Found at i:86084090 original size:43 final size:43
Alignment explanation
Indices: 86083944--86084083 Score: 149
Period size: 43 Copynumber: 3.3 Consensus size: 43
86083934 TGTGATTATG
* *
86083944 TGTAAGACCATGTCTAGAACATTGGCATC-AT-TTTGCAATTACA
1 TGTAAGACCATGTCTAGGACATTGGCATCGATATATG--ATTACA
* * * * * *
86083987 TGTAAGACCATGCCTAGGACATTGCCATAGTTATATGATTTCG
1 TGTAAGACCATGTCTAGGACATTGGCATCGATATATGATTACA
* * *
86084030 TGTAAGACCATGTCTGGGACATTGGCATCGATATGTGATAACA
1 TGTAAGACCATGTCTAGGACATTGGCATCGATATATGATTACA
86084073 TGTAAGACCAT
1 TGTAAGACCAT
86084084 ATCTGGGTTA
Statistics
Matches: 78, Mismatches: 17, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
43 74 0.95
44 1 0.01
45 3 0.04
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.31
Consensus pattern (43 bp):
TGTAAGACCATGTCTAGGACATTGGCATCGATATATGATTACA
Found at i:86091092 original size:27 final size:27
Alignment explanation
Indices: 86091025--86091092 Score: 75
Period size: 27 Copynumber: 2.5 Consensus size: 27
86091015 GTTATACATA
* * * *
86091025 TCATAGGGGTATATCAGTCATTTTACC
1 TCATAGAGGTATAACAATCACTTTACC
*
86091052 TCATA-AGGGCATAACAATCACTTTACC
1 TCATAGA-GGTATAACAATCACTTTACC
86091079 TCATAGAGGTATAA
1 TCATAGAGGTATAA
86091093 TAGTTATTTC
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
27 32 0.97
28 1 0.03
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (27 bp):
TCATAGAGGTATAACAATCACTTTACC
Found at i:86093677 original size:86 final size:84
Alignment explanation
Indices: 86093564--86093737 Score: 260
Period size: 86 Copynumber: 2.0 Consensus size: 84
86093554 AACTTTATCC
* *
86093564 TATATTTCTGAAATCAATTCAGGACCC-AGATCACGCCACTCACCCAACTCAGTCCCACACGAAG
1 TATATTTCTGAAATCAATTCAGGACCCAAAAT-ACGCCACTCACCCAACTCAGTCCAACACGAAG
* *
86093628 GAGTATGACACCTATGACCA
65 GAGTACGACACCTACGACCA
* *
86093648 TATATTTCCTCGAAATCAATTCATGACCCAAAATATGCCACTCACCCAACTCAGTCCAACACGAA
1 TATATTT-CT-GAAATCAATTCAGGACCCAAAATACGCCACTCACCCAACTCAGTCCAACACGAA
86093713 GGAGTACGACACCTACGACCA
64 GGAGTACGACACCTACGACCA
86093734 TATA
1 TATA
86093738 GTGCCTTGTA
Statistics
Matches: 81, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
84 7 0.09
85 2 0.02
86 69 0.85
87 3 0.04
ACGTcount: A:0.35, C:0.32, G:0.13, T:0.21
Consensus pattern (84 bp):
TATATTTCTGAAATCAATTCAGGACCCAAAATACGCCACTCACCCAACTCAGTCCAACACGAAGG
AGTACGACACCTACGACCA
Found at i:86098749 original size:46 final size:46
Alignment explanation
Indices: 86098602--86098862 Score: 176
Period size: 46 Copynumber: 5.6 Consensus size: 46
86098592 TATTTGTGCA
* * **
86098602 CCAGTGCAAGACATGTCTGGGACATGCATCGACCACATTATGAGAG
1 CCAGTGTAAGACATGTCTGGGACATGCATCGACCTCAAGATGAGAG
* * * * ** *
86098648 CTAGTGTAAGACCATGTCTTGGAAATGGCATC-AGCATTGAGACGAGAG
1 CCAGTGTAAGA-CATGTCTGGGACAT-GCATCGA-CCTCAAGATGAGAG
**
86098696 CTGGTGTAAGACATGTCTGGGACATGCATCGACCTCAAGATGTA-AG
1 CCAGTGTAAGACATGTCTGGGACATGCATCGACCTCAAGATG-AGAG
* *
86098742 CCAGTGTAAGACATGTCTGGGACATGCATCG-GCTACAAGAT-A-TG
1 CCAGTGTAAGACATGTCTGGGACATGCATCGACCT-CAAGATGAGAG
** * * * *
86098786 TTAGTGCAAGACAATGTTTGGGACATGGCATCGACATGGATATG-TGAGAG
1 CCAGTGTAAGAC-ATGTCTGGGACAT-GCATCGACCT-CA-A-GATGAGAG
86098836 CCAGTGTAAGACCATGT-TAGGGACATG
1 CCAGTGTAAGA-CATGTCT-GGGACATG
86098863 GTGTCGGCCT
Statistics
Matches: 166, Mismatches: 34, Indels: 27
0.73 0.15 0.12
Matches are distributed among these distances:
44 11 0.07
45 14 0.08
46 63 0.38
47 29 0.17
48 24 0.14
49 4 0.02
50 20 0.12
51 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.23
Consensus pattern (46 bp):
CCAGTGTAAGACATGTCTGGGACATGCATCGACCTCAAGATGAGAG
Found at i:86104243 original size:27 final size:27
Alignment explanation
Indices: 86104183--86104244 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
86104173 CATATATATC
*
86104183 ATAGGGGTATAACAGTCACTTTACCAC
1 ATAGGGGTATAACAGTCACTTTACCAA
* *
86104210 ATAGGGGTATAATAGTCA-TTTCATCAA
1 ATAGGGGTATAACAGTCACTTT-ACCAA
*
86104237 ATTGGGGT
1 ATAGGGGT
86104245 CTAGGTATAC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 3 0.10
27 27 0.90
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.31
Consensus pattern (27 bp):
ATAGGGGTATAACAGTCACTTTACCAA
Found at i:86122636 original size:22 final size:22
Alignment explanation
Indices: 86122609--86122658 Score: 82
Period size: 22 Copynumber: 2.3 Consensus size: 22
86122599 ATCAACATAT
86122609 CATAAACAACACAACAATTATG
1 CATAAACAACACAACAATTATG
* *
86122631 TATAAACAACATAACAATTATG
1 CATAAACAACACAACAATTATG
86122653 CATAAA
1 CATAAA
86122659 ATCAAGCATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.56, C:0.18, G:0.04, T:0.22
Consensus pattern (22 bp):
CATAAACAACACAACAATTATG
Found at i:86125255 original size:96 final size:96
Alignment explanation
Indices: 86125091--86125280 Score: 283
Period size: 96 Copynumber: 2.0 Consensus size: 96
86125081 GTGCCCGAGG
* * * *
86125091 AAGTCTGTCATCAATGGAAATGATGGAGCAAACAAGGAGCCCAAGAAGCTTGGTTCAAGTAAGGG
1 AAGTCAGTCATCAAAGGAAATGATGGAGCAAACAAGAAGCCCAAGAAGCTTGGTTCAAGCAAGGG
*
86125156 -AAAAGCTGAAGCCAAGAGGGAAAAGAGGAAC
66 AAAAATC-GAAGCCAAGAGGGAAAAGAGGAAC
* * *
86125187 AAGTCAGTCATCAAAGGGAATGATGGAGTAGACAAGAAGCCCAAGAAGCTTGGTTCAAGCAAGGG
1 AAGTCAGTCATCAAAGGAAATGATGGAGCAAACAAGAAGCCCAAGAAGCTTGGTTCAAGCAAGGG
*
86125252 AAAAATCGAAGCCAAGAGGGCAAAGAGGA
66 AAAAATCGAAGCCAAGAGGGAAAAGAGGA
86125281 GCAAAAAGAA
Statistics
Matches: 84, Mismatches: 9, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
96 79 0.94
97 5 0.06
ACGTcount: A:0.42, C:0.15, G:0.31, T:0.13
Consensus pattern (96 bp):
AAGTCAGTCATCAAAGGAAATGATGGAGCAAACAAGAAGCCCAAGAAGCTTGGTTCAAGCAAGGG
AAAAATCGAAGCCAAGAGGGAAAAGAGGAAC
Found at i:86132702 original size:4 final size:4
Alignment explanation
Indices: 86132693--86132725 Score: 66
Period size: 4 Copynumber: 8.2 Consensus size: 4
86132683 AAGATGTGAT
86132693 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA T
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA T
86132726 GATTCATGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:86149671 original size:38 final size:38
Alignment explanation
Indices: 86149627--86149700 Score: 121
Period size: 38 Copynumber: 1.9 Consensus size: 38
86149617 TGGCTAGTAG
* *
86149627 ACACGCCCTTGTCTTAGACCGTGTGAAAATAAGGCAAA
1 ACACGCCCATGTCTTAGACCGCGTGAAAATAAGGCAAA
*
86149665 ACACGCCCATGTCTTAGACCGCGTGAAAATAGGGCA
1 ACACGCCCATGTCTTAGACCGCGTGAAAATAAGGCA
86149701 TAAATACTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.32, C:0.26, G:0.23, T:0.19
Consensus pattern (38 bp):
ACACGCCCATGTCTTAGACCGCGTGAAAATAAGGCAAA
Found at i:86151017 original size:23 final size:23
Alignment explanation
Indices: 86150988--86151111 Score: 119
Period size: 23 Copynumber: 5.4 Consensus size: 23
86150978 GCTGAAGAAC
*
86150988 AGTAAGCTCTATTGAGCTGAATT
1 AGTAAGCTCTATTGAGCTGAAAT
*
86151011 AGTAAGCTCTATTAAGCTG-AAT
1 AGTAAGCTCTATTGAGCTGAAAT
* *
86151033 CTGTAAGCTCTATCGAGCT-AAAT
1 -AGTAAGCTCTATTGAGCTGAAAT
* *
86151056 AGTAAGCTC-ATACGAGCTGAAAC
1 AGTAAGCTCTAT-TGAGCTGAAAT
* * * *
86151079 GGTAAGCTCCAATGAGCTAAAAT
1 AGTAAGCTCTATTGAGCTGAAAT
86151102 AGTAAGCTCT
1 AGTAAGCTCT
86151112 TATGAACTGA
Statistics
Matches: 82, Mismatches: 14, Indels: 10
0.77 0.13 0.09
Matches are distributed among these distances:
21 2 0.02
22 16 0.20
23 63 0.77
24 1 0.01
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (23 bp):
AGTAAGCTCTATTGAGCTGAAAT
Found at i:86151043 original size:46 final size:45
Alignment explanation
Indices: 86150989--86151111 Score: 142
Period size: 45 Copynumber: 2.7 Consensus size: 45
86150979 CTGAAGAACA
* * *
86150989 GTAAGCTCTATTGAGCTGAATTAGTAAGCTCTATTA-AGCTGAATCT
1 GTAAGCTCTATTGAGCT-AAATAGTAAGCTCTA-TACAGCTGAAACG
*
86151035 GTAAGCTCTATCGAGCTAAATAGTAAGCTC-ATACGAGCTGAAACG
1 GTAAGCTCTATTGAGCTAAATAGTAAGCTCTATAC-AGCTGAAACG
* *
86151080 GTAAGCTCCAATGAGCTAAAATAGTAAGCTCT
1 GTAAGCTCTATTGAGCT-AAATAGTAAGCTCT
86151112 TATGAACTGA
Statistics
Matches: 66, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
43 2 0.03
44 1 0.02
45 34 0.52
46 29 0.44
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (45 bp):
GTAAGCTCTATTGAGCTAAATAGTAAGCTCTATACAGCTGAAACG
Found at i:86153058 original size:28 final size:28
Alignment explanation
Indices: 86152996--86153098 Score: 127
Period size: 28 Copynumber: 3.7 Consensus size: 28
86152986 CGGCCCCTTT
*
86152996 AGGCCCAATCACATTCATATGGCCCCTC
1 AGGCCCAATCACATTCATATGGCCCATC
* * *
86153024 -GATCCCAGTTACATTCATATGGCCCATC
1 AG-GCCCAATCACATTCATATGGCCCATC
* *
86153052 AGGCCCAATCACTTTCATATGGCCCGTC
1 AGGCCCAATCACATTCATATGGCCCATC
*
86153080 AGGCCCAATCACATACATA
1 AGGCCCAATCACATTCATA
86153099 ATCATGCAGT
Statistics
Matches: 62, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
27 1 0.02
28 60 0.97
29 1 0.02
ACGTcount: A:0.27, C:0.35, G:0.15, T:0.23
Consensus pattern (28 bp):
AGGCCCAATCACATTCATATGGCCCATC
Found at i:86157692 original size:28 final size:28
Alignment explanation
Indices: 86157651--86157754 Score: 156
Period size: 28 Copynumber: 3.7 Consensus size: 28
86157641 TGGCCCCTTT
* *
86157651 AGGCCCAATCACATTCATATTGCCCCTC
1 AGGCCCAATCACATTCATATGGCCCATC
86157679 -GAGCCCAATCACATTCATATGGCCCATC
1 AG-GCCCAATCACATTCATATGGCCCATC
* *
86157707 AGGCCCAATCACTTTCATATGGCCCGTC
1 AGGCCCAATCACATTCATATGGCCCATC
86157735 AGGCCCAATCACATTCATAT
1 AGGCCCAATCACATTCATAT
86157755 TCATGCAATG
Statistics
Matches: 69, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
27 1 0.01
28 67 0.97
29 1 0.01
ACGTcount: A:0.27, C:0.36, G:0.13, T:0.24
Consensus pattern (28 bp):
AGGCCCAATCACATTCATATGGCCCATC
Found at i:86162281 original size:27 final size:27
Alignment explanation
Indices: 86162226--86162282 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
86162216 TACGCACGAG
*
86162226 GGGCAAAATGATAATTTAACACCCTAA
1 GGGCAAAATGATAATTTAACACCCCAA
* *
86162253 GGGCAAAATGGTAATTTTAC-CCCACAA
1 GGGCAAAATGATAATTTAACACCC-CAA
86162280 GGG
1 GGG
86162283 TATCTCAGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 3 0.12
27 23 0.88
ACGTcount: A:0.39, C:0.19, G:0.21, T:0.21
Consensus pattern (27 bp):
GGGCAAAATGATAATTTAACACCCCAA
Found at i:86162334 original size:54 final size:54
Alignment explanation
Indices: 86162263--86162457 Score: 237
Period size: 54 Copynumber: 3.6 Consensus size: 54
86162253 GGGCAAAATG
* * * * * *
86162263 GTAATTTTACCCCACAAGGGTATCTCAGTAATTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTATAGGGGTATTTTA
* * * *
86162317 ATATTTCAACCCTACAAGGGTATTTCGGTAATTCTACCTTATAAGGGTATTTTA
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTATAGGGGTATTTTA
* * * * *
86162371 GTAATTCTACCTTATAGGGGTATTTCGGTAATTATACCTTACAGGGGTATTTTA
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTATAGGGGTATTTTA
* *
86162425 GTAATTCTACCCTACAGGGGTATTTTGGTAATT
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATT
86162458 TTACAAACCA
Statistics
Matches: 119, Mismatches: 22, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 119 1.00
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.38
Consensus pattern (54 bp):
GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTATAGGGGTATTTTA
Found at i:86162419 original size:81 final size:81
Alignment explanation
Indices: 86162263--86162457 Score: 230
Period size: 81 Copynumber: 2.4 Consensus size: 81
86162253 GGGCAAAATG
* * * * *
86162263 GTAATTTTACCCCACAAGGGTATCTCAGTAATTCTACCCTATAGGGGTATTTCAATATTTCAACC
1 GTAATTCTACCCTACAAGGGTATTTTAGTAATTCTACCCTATAGGGGTATTTCAATAATTCAACC
*
86162328 CTACAAGGGTATTTCG
66 CTACAAGGGTATTTCA
* * * **
86162344 GTAATTCTACCTTATAAGGGTATTTTAGTAATTCTACCTTATAGGGGTATTTCGGTAATT-ATAC
1 GTAATTCTACCCTACAAGGGTATTTTAGTAATTCTACCCTATAGGGGTATTTCAATAATTCA-AC
* * *
86162408 CTTACAGGGGTATTTTA
65 CCTACAAGGGTATTTCA
* *
86162425 GTAATTCTACCCTACAGGGGTATTTTGGTAATT
1 GTAATTCTACCCTACAAGGGTATTTTAGTAATT
86162458 TTACAAACCA
Statistics
Matches: 95, Mismatches: 18, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
80 1 0.01
81 94 0.99
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.38
Consensus pattern (81 bp):
GTAATTCTACCCTACAAGGGTATTTTAGTAATTCTACCCTATAGGGGTATTTCAATAATTCAACC
CTACAAGGGTATTTCA
Found at i:86162450 original size:27 final size:27
Alignment explanation
Indices: 86162263--86162449 Score: 194
Period size: 27 Copynumber: 6.9 Consensus size: 27
86162253 GGGCAAAATG
* * * *
86162263 GTAATTTTACCCCACAAGGGTATCTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
86162290 GTAATTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * * * *
86162317 ATATTTCAACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* * * *
86162344 GTAATTCTACCTTATAAGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
86162371 GTAATTCTACCTTATAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
86162398 GTAATTATACCTTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
86162425 GTAATTCTACCCTACAGGGGTATTT
1 GTAATTCTACCCTACAGGGGTATTT
86162450 TGGTAATTTT
Statistics
Matches: 133, Mismatches: 27, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 133 1.00
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:86162455 original size:27 final size:27
Alignment explanation
Indices: 86162261--86162484 Score: 180
Period size: 27 Copynumber: 8.3 Consensus size: 27
86162251 AAGGGCAAAA
* * *
86162261 TGGTAATTTTACCCCACAAGGGTATCT
1 TGGTAATTCTACCCTACAAGGGTATTT
** * *
86162288 CAGTAATTCTACCCTATAGGGGTATTT
1 TGGTAATTCTACCCTACAAGGGTATTT
*** * *
86162315 CAATATTTCAACCCTACAAGGGTATTT
1 TGGTAATTCTACCCTACAAGGGTATTT
* * *
86162342 CGGTAATTCTACCTTATAAGGGTATTT
1 TGGTAATTCTACCCTACAAGGGTATTT
* * * *
86162369 TAGTAATTCTACCTTATAGGGGTATTT
1 TGGTAATTCTACCCTACAAGGGTATTT
* * * *
86162396 CGGTAATTATACCTTACAGGGGTATTT
1 TGGTAATTCTACCCTACAAGGGTATTT
* *
86162423 TAGTAATTCTACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAAGGGTATTT
* **
86162450 TGGTAATTTTA-CAAACCAAGGGTATTT
1 TGGTAATTCTACCCTA-CAAGGGTATTT
86162477 TGGTAATT
1 TGGTAATT
86162485 TTGCTAATCG
Statistics
Matches: 162, Mismatches: 34, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
26 2 0.01
27 160 0.99
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.38
Consensus pattern (27 bp):
TGGTAATTCTACCCTACAAGGGTATTT
Found at i:86162485 original size:27 final size:27
Alignment explanation
Indices: 86162442--86162512 Score: 106
Period size: 27 Copynumber: 2.6 Consensus size: 27
86162432 TACCCTACAG
86162442 GGGTATTTTGGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAA
* * * *
86162469 GGGTATTTTGGTAATTTTGCTAATCGA
1 GGGTATTTTGGTAATTTTACAAACCAA
86162496 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
86162513 GGTAAACTAA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.25, C:0.07, G:0.24, T:0.44
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAA
Found at i:86164663 original size:46 final size:46
Alignment explanation
Indices: 86164613--86164785 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
86164603 TGGTTGAGCA
*
86164613 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAATG
* * * * *
86164659 TCCGAACTCATTGAGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAA--ATG
* *
86164704 CATCCGAACTCGTTGAGTTGAGTCCGAGTTAACTTATGGATGTGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAATG
*
86164752 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
86164786 GGGGCAGGTT
Statistics
Matches: 104, Mismatches: 15, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
43 5 0.05
45 6 0.06
46 57 0.55
47 27 0.26
48 4 0.04
50 5 0.05
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAATG
Found at i:86164769 original size:93 final size:93
Alignment explanation
Indices: 86164610--86164780 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
86164600 GGATGGTTGA
*
86164610 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTAACTTATGGATGCAAATGTCCGAACTCATTGAGT
86164675 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
** * *
86164703 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTAACTTATGGATGTGAATG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTAACTTATGGATGCAAATGTCC-GAACTCATTGAG
86164767 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
86164781 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTAACTTATGGATGCAAATGTCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:86174503 original size:23 final size:23
Alignment explanation
Indices: 86174447--86174495 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
86174437 TTATTGGAGT
86174447 TTACCGTTTCAACTCGATAGAGC
1 TTACCGTTTCAACTCGATAGAGC
*
86174470 TTACCGTTTCAACTCTATAGAGC
1 TTACCGTTTCAACTCGATAGAGC
86174493 TTA
1 TTA
86174496 TTGTTTCAGC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.27, C:0.24, G:0.14, T:0.35
Consensus pattern (23 bp):
TTACCGTTTCAACTCGATAGAGC
Found at i:86182290 original size:27 final size:27
Alignment explanation
Indices: 86182016--86182279 Score: 411
Period size: 27 Copynumber: 9.8 Consensus size: 27
86182006 TTATCGTTTG
* *
86182016 ACCCTCGATTTACAGAATTACCGTTTT
1 ACCCTCGATTTATAGAATTACCATTTT
86182043 ACCCTCGATTTATAGAATTACCATTTT
1 ACCCTCGATTTATAGAATTACCATTTT
*
86182070 ACCCTCGATTTATAGAATTACTATTTT
1 ACCCTCGATTTATAGAATTACCATTTT
*
86182097 ACCCTCGATTTACAGAATTACCATTTT
1 ACCCTCGATTTATAGAATTACCATTTT
**
86182124 ACCCTCGATTTATAGAATTACTGTTTT
1 ACCCTCGATTTATAGAATTACCATTTT
* *
86182151 ACCATCGATTTATAGAATTACCGTTTT
1 ACCCTCGATTTATAGAATTACCATTTT
86182178 ACCCTCGATTTATAGAATTACCATTTT
1 ACCCTCGATTTATAGAATTACCATTTT
86182205 ACCCTCGATTTATAGAATTACCATTTT
1 ACCCTCGATTTATAGAATTACCATTTT
* * *
86182232 ACCCTCAATTTACATAATTACCATTTT
1 ACCCTCGATTTATAGAATTACCATTTT
* *
86182259 ACCCTCGATTTACAAAATTAC
1 ACCCTCGATTTATAGAATTAC
86182280 TAAAATACCC
Statistics
Matches: 220, Mismatches: 17, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 220 1.00
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.40
Consensus pattern (27 bp):
ACCCTCGATTTATAGAATTACCATTTT
Found at i:86182299 original size:54 final size:54
Alignment explanation
Indices: 86182016--86182343 Score: 172
Period size: 54 Copynumber: 6.1 Consensus size: 54
86182006 TTATCGTTTG
* * * * * * ***
86182016 ACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTT
1 ACCCTCAACTTACAAAATTACCATTTTACCCTCGATTTACAAAATTACCAAAAT
* * * * * * ***
86182070 ACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAGAATTACCATTTT
1 ACCCTCAACTTACAAAATTACCATTTTACCCTCGATTTACAAAATTACCAAAAT
* * * * ** * * * ****
86182124 ACCCTCGATTTATAGAATTACTGTTTTACCATCGATTTATAGAATTACCGTTTT
1 ACCCTCAACTTACAAAATTACCATTTTACCCTCGATTTACAAAATTACCAAAAT
* * * * * * ***
86182178 ACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTT
1 ACCCTCAACTTACAAAATTACCATTTTACCCTCGATTTACAAAATTACCAAAAT
* * *
86182232 ACCCTCAATTTACATAATTACCATTTTACCCTCGATTTACAAAATTACTAAAAT
1 ACCCTCAACTTACAAAATTACCATTTTACCCTCGATTTACAAAATTACCAAAAT
*** * *** * *
86182286 ACCCTTGGCTTACAAAATTGCCAAAATACCCTC-AATTAGTAAAATTACCAAAAT
1 ACCCTCAACTTACAAAATTACCATTTTACCCTCGATTTA-CAAAATTACCAAAAT
86182340 ACCC
1 ACCC
86182344 CTGGTTTGTA
Statistics
Matches: 240, Mismatches: 33, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
53 4 0.02
54 236 0.98
ACGTcount: A:0.33, C:0.23, G:0.07, T:0.37
Consensus pattern (54 bp):
ACCCTCAACTTACAAAATTACCATTTTACCCTCGATTTACAAAATTACCAAAAT
Found at i:86182433 original size:27 final size:27
Alignment explanation
Indices: 86182272--86182507 Score: 210
Period size: 27 Copynumber: 8.8 Consensus size: 27
86182262 CTCGATTTAC
* * * **
86182272 AAAATTACTAAAATACCCTTGGCTTAC
1 AAAATTACCAAAATACCCCTGGTTTGT
* ** *
86182299 AAAATTGCCAAAATA-CCCTCAATTAGT
1 AAAATTACCAAAATACCCCT-GGTTTGT
86182326 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
*
86182353 AAAATTACTAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
*
86182380 AAAATTACCAAAATACCCCTGGCTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
*
86182407 AAAATTACCAAAATACCCCTGATTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
* * * * *
86182434 GAAATTATCGAAATA-CTCTCGATTTGT
1 AAAATTACCAAAATACCCCT-GGTTTGT
* * **
86182461 AAAA-TATCGAAATACCCCT-GTAGGGT
1 AAAATTACCAAAATACCCCTGGT-TTGT
* *
86182487 AGAATTACCGAAATACCCCTG
1 AAAATTACCAAAATACCCCTG
86182508 TAAGGTAGAA
Statistics
Matches: 173, Mismatches: 29, Indels: 13
0.80 0.13 0.06
Matches are distributed among these distances:
25 1 0.01
26 21 0.12
27 147 0.85
28 4 0.02
ACGTcount: A:0.39, C:0.22, G:0.11, T:0.28
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGGTTTGT
Found at i:86182433 original size:81 final size:81
Alignment explanation
Indices: 86182272--86182440 Score: 232
Period size: 81 Copynumber: 2.1 Consensus size: 81
86182262 CTCGATTTAC
* *
86182272 AAAATTACTAAAATACCCTTGGCTTACAAAATTGCCAAAATACCCTCAATTAGTAAAATTACCAA
1 AAAATTACTAAAATACCCCTGGCTTACAAAATTACCAAAATACCCTCAATTAGTAAAATTACCAA
*
86182337 AATACCCCTGGTTTGT
66 AATACCCCTGATTTGT
* ** ***
86182353 AAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGGCTT-GTAAAATTACCA
1 AAAATTACTAAAATACCCCTGGCTTACAAAATTACCAAAATA-CCCTCAATTAGTAAAATTACCA
86182417 AAATACCCCTGATTTGT
65 AAATACCCCTGATTTGT
*
86182434 GAAATTA
1 AAAATTA
86182441 TCGAAATACT
Statistics
Matches: 77, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
81 71 0.92
82 6 0.08
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.29
Consensus pattern (81 bp):
AAAATTACTAAAATACCCCTGGCTTACAAAATTACCAAAATACCCTCAATTAGTAAAATTACCAA
AATACCCCTGATTTGT
Found at i:86182448 original size:81 final size:80
Alignment explanation
Indices: 86182324--86182533 Score: 212
Period size: 80 Copynumber: 2.6 Consensus size: 80
86182314 CCCTCAATTA
* * *
86182324 GTAAAATTACCAAAATACCCCTGGTTTGTAAAATTA-CTAAAATACCCCT-GGTTTGTAAAATTA
1 GTAAAATTACCAAAATACCCCT-GTTTGTGAAATTATC-GAAATACCCCTCGATTTGTAAAA-TA
***
86182387 CCAAAATACCCCTGGCTT
63 CCAAAATACCCCTGGAGG
* *
86182405 GTAAAATTACCAAAATACCCCTGATTTGTGAAATTATCGAAATA-CTCTCGATTTGTAAAATATC
1 GTAAAATTACCAAAATACCCCTG-TTTGTGAAATTATCGAAATACCCCTCGATTTGTAAAATACC
* *
86182469 GAAATACCCCTGTAGG
65 AAAATACCCCTGGAGG
* * **
86182485 GTAGAATTACCGAAATACCCCTGTAAG-GTAGAATTATCGAAATACCCCT
1 GTAAAATTACCAAAATACCCCTGTTTGTG-A-AATTATCGAAATACCCCT
86182534 ATAGGGTAGA
Statistics
Matches: 108, Mismatches: 15, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
78 1 0.01
79 3 0.03
80 52 0.48
81 51 0.47
82 1 0.01
ACGTcount: A:0.37, C:0.21, G:0.13, T:0.29
Consensus pattern (80 bp):
GTAAAATTACCAAAATACCCCTGTTTGTGAAATTATCGAAATACCCCTCGATTTGTAAAATACCA
AAATACCCCTGGAGG
Found at i:86182508 original size:27 final size:27
Alignment explanation
Indices: 86182468--86182738 Score: 346
Period size: 27 Copynumber: 10.0 Consensus size: 27
86182458 TGTAAAATAT
86182468 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
86182495 CGAAATACCCCTGTAAGGTAGAATTAT
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
86182522 CGAAATACCCCTATAGGGTAGAATTA-
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
86182548 CTAAACTAACCCTGTAGGGTAGAATTAC
1 CGAAA-TACCCCTGTAGGGTAGAATTAC
86182576 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
86182603 TGAAATACCCTTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
86182630 CGAAATACCCTTGTAGGGTAGAAATAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * *
86182657 CGAAATACCCCTGTATGGTAAAAATAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * *
86182684 TGAAATACCCCTATAGGGTAGAAATAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * * * *
86182711 TGAGATACCCTTGTGGGGTAAAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
86182738 C
1 C
86182739 ATTTTGCCCC
Statistics
Matches: 215, Mismatches: 27, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
26 4 0.02
27 207 0.96
28 4 0.02
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.24
Consensus pattern (27 bp):
CGAAATACCCCTGTAGGGTAGAATTAC
Found at i:86183017 original size:24 final size:25
Alignment explanation
Indices: 86182941--86183010 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
86182931 AGGAAGTGCT
* ** * *
86182941 AAAAGGGCTATGCCTTAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATCA
86182966 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
86182991 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
86183011 ATTAAAAGAG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:86183023 original size:24 final size:24
Alignment explanation
Indices: 86182966--86183037 Score: 76
Period size: 25 Copynumber: 3.0 Consensus size: 24
86182956 TAGTTTACCG
86182966 AAAAG-GGCTTTGCCCCAGTTTATC
1 AAAAGAGGCTTTGCCCCAG-TTATC
*
86182990 AAAA-AGGGCTTTGCCCCAGTTATT
1 AAAAGA-GGCTTTGCCCCAGTTATC
**
86183014 AAAAGAGGCTAAGCCTCCAGTTAT
1 AAAAGAGGCTTTGCC-CCAGTTAT
86183038 ATGATAAAGC
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
24 19 0.46
25 22 0.54
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.26
Consensus pattern (24 bp):
AAAAGAGGCTTTGCCCCAGTTATC
Found at i:86185000 original size:38 final size:38
Alignment explanation
Indices: 86184911--86185078 Score: 192
Period size: 38 Copynumber: 4.4 Consensus size: 38
86184901 CGAGGTATAA
* * * * **
86184911 AACCCAAACATAACACCAGCACAAAGCCTATGGGACTTT
1 AACCCAGATATAATACCAGCACGAAGCCTGCGGGA-TTT
* * * *
86184950 AAACTCAGATATAATACCAGCACTAGGCCTGGGGGATTT
1 -AACCCAGATATAATACCAGCACGAAGCCTGCGGGATTT
86184989 AACCCAGATATAATACCAGCACGAAGCCTGCGGGATTT
1 AACCCAGATATAATACCAGCACGAAGCCTGCGGGATTT
* *
86185027 AACCCAGATATATTACCAGCACGAAGCCTGTGGGATTT
1 AACCCAGATATAATACCAGCACGAAGCCTGCGGGATTT
* *
86185065 AATCCGGATATAAT
1 AACCCAGATATAAT
86185079 TCCAACATAT
Statistics
Matches: 111, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
38 81 0.73
39 3 0.03
40 27 0.24
ACGTcount: A:0.36, C:0.24, G:0.19, T:0.21
Consensus pattern (38 bp):
AACCCAGATATAATACCAGCACGAAGCCTGCGGGATTT
Found at i:86185093 original size:76 final size:76
Alignment explanation
Indices: 86184955--86185098 Score: 191
Period size: 76 Copynumber: 1.9 Consensus size: 76
86184945 ACTTTAAACT
* * *
86184955 CAGATATAATACCAGCACTAGGCCTGGGGGATTTAACCCAGATATAATACCAGCACGAAGCCTGC
1 CAGATATAATACCAGCACGAAGCCTGGGGGATTTAACCCAGATATAATACCAACACGAAGCCTGC
86185020 GGGATTTAACC
66 GGGATTTAACC
* * * * * *
86185031 CAGATATATTACCAGCACGAAGCCTGTGGGATTTAATCCGGATATAATTCCAACA-TATAGCCTG
1 CAGATATAATACCAGCACGAAGCCTGGGGGATTTAACCCAGATATAATACCAACACGA-AGCCTG
86185095 CGGG
65 CGGG
86185099 TCTATAAGCC
Statistics
Matches: 58, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
75 1 0.02
76 57 0.98
ACGTcount: A:0.32, C:0.24, G:0.22, T:0.22
Consensus pattern (76 bp):
CAGATATAATACCAGCACGAAGCCTGGGGGATTTAACCCAGATATAATACCAACACGAAGCCTGC
GGGATTTAACC
Found at i:86201920 original size:20 final size:18
Alignment explanation
Indices: 86201877--86201911 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
86201867 TTCCTGTCAG
**
86201877 AAAATAATTAATTTTTAT
1 AAAATAATTAAAGTTTAT
86201895 AAAATAATTAAAGTTTA
1 AAAATAATTAAAGTTTA
86201912 CTTAAAATAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (18 bp):
AAAATAATTAAAGTTTAT
Found at i:86205090 original size:28 final size:28
Alignment explanation
Indices: 86205054--86205107 Score: 65
Period size: 28 Copynumber: 1.9 Consensus size: 28
86205044 TTCACATACA
*
86205054 CTCAAAT-AAGCAAGTTAGTCATATAATT
1 CTCAAATAAAGCAAGTAAG-CATATAATT
* *
86205082 CTCATATAAATCAAGTAAGCATATAA
1 CTCAAATAAAGCAAGTAAGCATATAA
86205108 ACTTTTAGGT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
28 13 0.59
29 9 0.41
ACGTcount: A:0.46, C:0.15, G:0.09, T:0.30
Consensus pattern (28 bp):
CTCAAATAAAGCAAGTAAGCATATAATT
Found at i:86207078 original size:87 final size:86
Alignment explanation
Indices: 86206932--86207097 Score: 296
Period size: 87 Copynumber: 1.9 Consensus size: 86
86206922 AAGTGCGAAA
* *
86206932 GACAAAAAGCATATAAATATAATGTTCATCGTCACATTATATTAGATTCTTGGAGTTTTTTTACA
1 GACAAAAAGCATATAAATATAACGTTCATCGTCACATTATATTAAATTCTTGGA-TTTTTTTACA
86206997 TTTATTGGAACATTTATTTAGT
65 TTTATTGGAACATTTATTTAGT
*
86207019 GACAAAAAGCATATAAATGTAACGTTCATCGTCACATTATATTAAATTCTTGGATTTTTTTACAT
1 GACAAAAAGCATATAAATATAACGTTCATCGTCACATTATATTAAATTCTTGGATTTTTTTACAT
86207084 TTATTGGAACATTT
66 TTATTGGAACATTT
86207098 GATTGCTTCA
Statistics
Matches: 76, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
86 25 0.33
87 51 0.67
ACGTcount: A:0.35, C:0.11, G:0.12, T:0.42
Consensus pattern (86 bp):
GACAAAAAGCATATAAATATAACGTTCATCGTCACATTATATTAAATTCTTGGATTTTTTTACAT
TTATTGGAACATTTATTTAGT
Found at i:86211287 original size:65 final size:65
Alignment explanation
Indices: 86211183--86211313 Score: 253
Period size: 65 Copynumber: 2.0 Consensus size: 65
86211173 CATGATATCC
86211183 TTTAAAAATTTGGCGTATTTTGGGACTTTCTCAATTAGTTCAATTAATGGTAGGTTAACATTCAA
1 TTTAAAAATTTGGCGTATTTTGGGACTTTCTCAATTAGTTCAATTAATGGTAGGTTAACATTCAA
*
86211248 TTTAAAATTTTGGCGTATTTTGGGACTTTCTCAATTAGTTCAATTAATGGTAGGTTAACATTCAA
1 TTTAAAAATTTGGCGTATTTTGGGACTTTCTCAATTAGTTCAATTAATGGTAGGTTAACATTCAA
86211313 T
1 T
86211314 GTTTTAAATA
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
65 65 1.00
ACGTcount: A:0.30, C:0.11, G:0.17, T:0.43
Consensus pattern (65 bp):
TTTAAAAATTTGGCGTATTTTGGGACTTTCTCAATTAGTTCAATTAATGGTAGGTTAACATTCAA
Found at i:86216887 original size:27 final size:27
Alignment explanation
Indices: 86216856--86216980 Score: 115
Period size: 27 Copynumber: 4.6 Consensus size: 27
86216846 ACATAGGGGT
* *
86216856 AAAACAGTCATCTTACCATAAAAGGGC
1 AAAACAGTCATTTTACCACAAAAGGGC
* *
86216883 AAAACAGTCATTTTACCACATAATGGC
1 AAAACAGTCATTTTACCACAAAAGGGC
* * * *
86216910 AAAACAATCATTTTACCTCATAAGGAC
1 AAAACAGTCATTTTACCACAAAAGGGC
** * * *
86216937 AAAACAACCATTTTACCTCATAATGGC
1 AAAACAGTCATTTTACCACAAAAGGGC
* *
86216964 AAAATAGTTATTTTACC
1 AAAACAGTCATTTTACC
86216981 GATTAAGGGT
Statistics
Matches: 83, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 83 1.00
ACGTcount: A:0.42, C:0.22, G:0.10, T:0.26
Consensus pattern (27 bp):
AAAACAGTCATTTTACCACAAAAGGGC
Found at i:86216904 original size:54 final size:54
Alignment explanation
Indices: 86216845--86216967 Score: 131
Period size: 54 Copynumber: 2.3 Consensus size: 54
86216835 AAACATACAT
* * * * **
86216845 CACATAGGGGTAAAACAGTCATCTTACCAT-AAAAGGGCAAAACAGTCATTTTAC
1 CACATAAGGGCAAAACAATCATCTTACC-TCAAAAGGACAAAACAACCATTTTAC
* * *
86216899 CACATAATGGCAAAACAATCATTTTACCTCATAAGGACAAAACAACCATTTTAC
1 CACATAAGGGCAAAACAATCATCTTACCTCAAAAGGACAAAACAACCATTTTAC
* *
86216953 CTCATAATGGCAAAA
1 CACATAAGGGCAAAA
86216968 TAGTTATTTT
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
53 1 0.02
54 57 0.98
ACGTcount: A:0.43, C:0.22, G:0.12, T:0.23
Consensus pattern (54 bp):
CACATAAGGGCAAAACAATCATCTTACCTCAAAAGGACAAAACAACCATTTTAC
Found at i:86220046 original size:18 final size:18
Alignment explanation
Indices: 86220023--86220075 Score: 70
Period size: 18 Copynumber: 2.9 Consensus size: 18
86220013 TAGCCCATTA
* *
86220023 CAGTAACAATAAATAGTG
1 CAGTAACAGTAAACAGTG
*
86220041 CAGTAACAGTAAGCAGTG
1 CAGTAACAGTAAACAGTG
*
86220059 AAGTAACAGTAAACAGT
1 CAGTAACAGTAAACAGT
86220076 ATGCAAGTCC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.47, C:0.13, G:0.21, T:0.19
Consensus pattern (18 bp):
CAGTAACAGTAAACAGTG
Found at i:86220407 original size:27 final size:27
Alignment explanation
Indices: 86220372--86220440 Score: 84
Period size: 27 Copynumber: 2.6 Consensus size: 27
86220362 ATAAAAGGGA
*
86220372 AAAACAGTCATTTTAACACATAAAGAC
1 AAAATAGTCATTTTAACACATAAAGAC
* * * **
86220399 AAAATAGTCATTTTACCTCATAAGGGT
1 AAAATAGTCATTTTAACACATAAAGAC
86220426 AAAATAGTCATTTTA
1 AAAATAGTCATTTTA
86220441 TCGATTAAAG
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.45, C:0.14, G:0.10, T:0.30
Consensus pattern (27 bp):
AAAATAGTCATTTTAACACATAAAGAC
Found at i:86221369 original size:23 final size:23
Alignment explanation
Indices: 86221343--86221390 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
86221333 AAACGGGTAT
86221343 GATTCGGCTAAAGAAGTAAAGAA
1 GATTCGGCTAAAGAAGTAAAGAA
* *
86221366 GATTCGGCTAGATAAGTAAAGAA
1 GATTCGGCTAAAGAAGTAAAGAA
86221389 GA
1 GA
86221391 AGACGTACAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.46, C:0.08, G:0.27, T:0.19
Consensus pattern (23 bp):
GATTCGGCTAAAGAAGTAAAGAA
Found at i:86223884 original size:27 final size:27
Alignment explanation
Indices: 86223852--86223949 Score: 110
Period size: 27 Copynumber: 3.6 Consensus size: 27
86223842 ACATAGGGGT
* *
86223852 AAAACAGTTATCTTACCATAAAAGGGC
1 AAAACAGTCATTTTACCATAAAAGGGC
* * *
86223879 AGAACAGTCATTTTACCACATAAGGGC
1 AAAACAGTCATTTTACCATAAAAGGGC
86223906 AAAACAGTCATTTTACC-TCATAAA-GGC
1 AAAACAGTCATTTTACCAT-A-AAAGGGC
*
86223933 AAAACAGTTATTTTACC
1 AAAACAGTCATTTTACC
86223950 GACAGTTATT
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
27 58 0.97
28 2 0.03
ACGTcount: A:0.41, C:0.20, G:0.13, T:0.26
Consensus pattern (27 bp):
AAAACAGTCATTTTACCATAAAAGGGC
Found at i:86223910 original size:54 final size:54
Alignment explanation
Indices: 86223841--86223949 Score: 132
Period size: 54 Copynumber: 2.0 Consensus size: 54
86223831 AAATATACAT
* * * *
86223841 CACATAGGGGTAAAACAGTTATCTTA-C-CATAAAAGGGCAGAACAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATCTTACCTCAT-AAA-GGCAAAACAGTCATTTTAC
* *
86223895 CACATAAGGGCAAAACAGTCATTTTACCTCATAAAGGCAAAACAGTTATTTTAC
1 CACATAAGGGCAAAACAGTCATCTTACCTCATAAAGGCAAAACAGTCATTTTAC
86223949 C
1 C
86223950 GACAGTTATT
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
54 40 0.85
55 4 0.09
56 3 0.06
ACGTcount: A:0.39, C:0.20, G:0.16, T:0.25
Consensus pattern (54 bp):
CACATAAGGGCAAAACAGTCATCTTACCTCATAAAGGCAAAACAGTCATTTTAC
Found at i:86224571 original size:12 final size:12
Alignment explanation
Indices: 86224554--86224579 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
86224544 AAATGAAAGG
86224554 TATGTGTTAGAT
1 TATGTGTTAGAT
86224566 TATGTGTTAGAT
1 TATGTGTTAGAT
86224578 TA
1 TA
86224580 CTAAGTTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.27, C:0.00, G:0.23, T:0.50
Consensus pattern (12 bp):
TATGTGTTAGAT
Found at i:86232246 original size:43 final size:43
Alignment explanation
Indices: 86232144--86232235 Score: 107
Period size: 43 Copynumber: 2.2 Consensus size: 43
86232134 TAAGAAGATA
* * * *
86232144 TCTGGGACATTAGCA-TCATATATGATTTCACGTAAGACCCTG
1 TCTGGGACAGTGGCATTGATATATGATTACACGTAAGACCCTG
* *
86232186 TCTGGGACAGTGGCATTGATATTTGATTACATGTAAGACCAC-G
1 TCTGGGACAGTGGCATTGATATATGATTACACGTAAGACC-CTG
86232229 TCTGGGA
1 TCTGGGA
86232236 TGTTGGCATT
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
42 13 0.31
43 28 0.67
44 1 0.02
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.30
Consensus pattern (43 bp):
TCTGGGACAGTGGCATTGATATATGATTACACGTAAGACCCTG
Found at i:86232563 original size:16 final size:16
Alignment explanation
Indices: 86232542--86232579 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
86232532 TGAAAATTTG
*
86232542 ATATGAAATGTACGAT
1 ATATGAAATATACGAT
*
86232558 ATATGAAATATATGAT
1 ATATGAAATATACGAT
86232574 A-ATGAA
1 ATATGAA
86232580 CGATATGTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 5 0.25
16 15 0.75
ACGTcount: A:0.50, C:0.03, G:0.16, T:0.32
Consensus pattern (16 bp):
ATATGAAATATACGAT
Found at i:86235109 original size:42 final size:42
Alignment explanation
Indices: 86234994--86235149 Score: 181
Period size: 42 Copynumber: 3.7 Consensus size: 42
86234984 TACCATACTA
* *** * *
86234994 ATGCCATATCCTAGATATGGTCTTACATGTAATCTCTTATTG
1 ATGCCATATCCCAGATATGGTCTTACACAAAATCTCATATCG
* * *
86235036 ATGCCAATAGCCCAGCTATGGTCTTAAACAAAATCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACAAAATCTCATATCG
*
86235079 ATGCCATATCCC-GTATATGGTCTTACACAAAGTCTCATA-CTG
1 ATGCCATATCCCAG-ATATGGTCTTACACAAAATCTCATATC-G
86235121 ATGCCATATCCCAGATATGGTCTTACACA
1 ATGCCATATCCCAGATATGGTCTTACACA
86235150 TAAACTTAGT
Statistics
Matches: 97, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
41 2 0.02
42 61 0.63
43 34 0.35
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.31
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACAAAATCTCATATCG
Found at i:86244321 original size:27 final size:27
Alignment explanation
Indices: 86244291--86244386 Score: 102
Period size: 27 Copynumber: 3.6 Consensus size: 27
86244281 ATATATACAA
* *
86244291 CACATAGGGGCAAAACAGTCATCTTAC
1 CACATAAGGGCAAAACAATCATCTTAC
*
86244318 CACATAAGGGCAAAACAATCATTTTAC
1 CACATAAGGGCAAAACAATCATCTTAC
* * * * *
86244345 CACATAAAGGTAAAACATTTATTTTAC
1 CACATAAGGGCAAAACAATCATCTTAC
* *
86244372 CATATAAGGGAAAAA
1 CACATAAGGGCAAAA
86244387 TAGTCAATTT
Statistics
Matches: 59, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 59 1.00
ACGTcount: A:0.45, C:0.19, G:0.14, T:0.23
Consensus pattern (27 bp):
CACATAAGGGCAAAACAATCATCTTAC
Found at i:86247851 original size:27 final size:27
Alignment explanation
Indices: 86247819--86247924 Score: 131
Period size: 27 Copynumber: 3.9 Consensus size: 27
86247809 ATATATACAA
* * *
86247819 CACATAGGGGCAACACAGTCATCTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
86247846 CACATAAGGGCAAAACAATCATTTTAT
1 CACATAAGGGCAAAACAGTCATTTTAC
86247873 CACATAAGGGCAAAACAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* * * *
86247900 CACATTAGAGCAAAATAGTCTTTTT
1 CACATAAGGGCAAAACAGTCATTTT
86247925 TCAACTTGGG
Statistics
Matches: 68, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 68 1.00
ACGTcount: A:0.39, C:0.22, G:0.14, T:0.25
Consensus pattern (27 bp):
CACATAAGGGCAAAACAGTCATTTTAC
Found at i:86251482 original size:27 final size:27
Alignment explanation
Indices: 86251452--86251557 Score: 140
Period size: 27 Copynumber: 3.9 Consensus size: 27
86251442 ATATATACAA
* *
86251452 CACATAGGGGCAAAACAGTCATCTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
86251479 CACATAAGGGCAAAACAATCATTTTAT
1 CACATAAGGGCAAAACAGTCATTTTAC
*
86251506 CACATAAGGGCAAAATAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* * *
86251533 CACATTAGAGCAAAACAGTCTTTTT
1 CACATAAGGGCAAAACAGTCATTTT
86251558 TCAACTTGGG
Statistics
Matches: 68, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 68 1.00
ACGTcount: A:0.40, C:0.21, G:0.14, T:0.25
Consensus pattern (27 bp):
CACATAAGGGCAAAACAGTCATTTTAC
Found at i:86253545 original size:42 final size:43
Alignment explanation
Indices: 86253466--86253597 Score: 135
Period size: 44 Copynumber: 3.1 Consensus size: 43
86253456 CTAATTATGG
** * * *
86253466 GCACTTAGTGTACGAAATCGAGATAGTTTCGATTATATATTTA
1 GCACTTAGTGTGTGAGATCGAGATAGCTTCGACTATATATTTA
86253509 G-ACTTAGTGTGTGAGATCGAGATAGCTTC-AGCTATATATATT-
1 GCACTTAGTGTGTGAGATCGAGATAGCTTCGA-CTATATAT-TTA
* * * *
86253551 GTCACTTAGTGTGTGAGATTGATACAGCTTCGACTATTTATTTA
1 G-CACTTAGTGTGTGAGATCGAGATAGCTTCGACTATATATTTA
86253595 GCA
1 GCA
86253598 TTAAATGTAC
Statistics
Matches: 74, Mismatches: 9, Indels: 12
0.78 0.09 0.13
Matches are distributed among these distances:
41 1 0.01
42 32 0.43
43 7 0.09
44 33 0.45
45 1 0.01
ACGTcount: A:0.29, C:0.13, G:0.21, T:0.37
Consensus pattern (43 bp):
GCACTTAGTGTGTGAGATCGAGATAGCTTCGACTATATATTTA
Found at i:86253562 original size:44 final size:44
Alignment explanation
Indices: 86253451--86253569 Score: 122
Period size: 42 Copynumber: 2.8 Consensus size: 44
86253441 TCGACAATGA
* * ** * *
86253451 TTCAGCTA-AT-TATGGGCACTTAGTGTACGAAATCGAGATAGT
1 TTCAGCTATATATATTGTCACTTAGTGTGTGAGATCGAGATAGC
* *
86253493 TTC-GAT-TATATATT-TAGACTTAGTGTGTGAGATCGAGATAGC
1 TTCAGCTATATATATTGT-CACTTAGTGTGTGAGATCGAGATAGC
86253535 TTCAGCTATATATATTGTCACTTAGTGTGTGAGAT
1 TTCAGCTATATATATTGTCACTTAGTGTGTGAGAT
86253570 TGATACAGCT
Statistics
Matches: 61, Mismatches: 10, Indels: 10
0.75 0.12 0.12
Matches are distributed among these distances:
41 4 0.07
42 30 0.49
43 2 0.03
44 24 0.39
45 1 0.02
ACGTcount: A:0.29, C:0.12, G:0.23, T:0.37
Consensus pattern (44 bp):
TTCAGCTATATATATTGTCACTTAGTGTGTGAGATCGAGATAGC
Found at i:86256269 original size:29 final size:29
Alignment explanation
Indices: 86256247--86256309 Score: 117
Period size: 29 Copynumber: 2.1 Consensus size: 29
86256237 GTGAATGATT
86256247 GAAATTTTGGGCATGTGAAGTGAAAGAAA
1 GAAATTTTGGGCATGTGAAGTGAAAGAAA
86256276 GAAATTTTGGGCATGTGAAGTGAAAGAAA
1 GAAATTTTGGGCATGTGAAGTGAAAGAAA
86256305 CGAAA
1 -GAAA
86256310 AATATAAAGG
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 29 0.88
30 4 0.12
ACGTcount: A:0.43, C:0.05, G:0.30, T:0.22
Consensus pattern (29 bp):
GAAATTTTGGGCATGTGAAGTGAAAGAAA
Found at i:86257396 original size:23 final size:25
Alignment explanation
Indices: 86257356--86257411 Score: 71
Period size: 23 Copynumber: 2.3 Consensus size: 25
86257346 CAGATGAGTA
*
86257356 ATCCTGATATAGCCTTC-T-TGAGC
1 ATCCTGATATAGACTTCTTGTGAGC
* *
86257379 ATCCTGATATATAGTTCTTGTGAGC
1 ATCCTGATATAGACTTCTTGTGAGC
86257404 ATCCTGAT
1 ATCCTGAT
86257412 TGATAGTGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
23 14 0.50
24 1 0.04
25 13 0.46
ACGTcount: A:0.23, C:0.21, G:0.18, T:0.38
Consensus pattern (25 bp):
ATCCTGATATAGACTTCTTGTGAGC
Found at i:86257588 original size:65 final size:66
Alignment explanation
Indices: 86257443--86257596 Score: 186
Period size: 65 Copynumber: 2.3 Consensus size: 66
86257433 TGCACTCTAC
* * * ** **
86257443 CGCAGCTCTTTATGAGCGTCCTGTTTATTGATCGATTGTGATTCCTGCATATGTTGTGGACACAA
1 CGCAGCTCTTTGTGAGCGTCCTGTTTATCGATCAATTGTGATTCCTGCATACATTGCAGACACAA
86257508 A
66 A
** *
86257509 TACAGCTCTGTGTGAGCGTCCTG-TTATGCGATCAATTGTGA-TCCTGCATACATTGCAGACACA
1 CGCAGCTCTTTGTGAGCGTCCTGTTTAT-CGATCAATTGTGATTCCTGCATACATTGCAGACACA
86257572 AA
65 AA
*
86257574 CGCAGCTCTTTGTGAGCATCCTG
1 CGCAGCTCTTTGTGAGCGTCCTG
86257597 ATGTGGCTCA
Statistics
Matches: 73, Mismatches: 14, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
65 43 0.59
66 30 0.41
ACGTcount: A:0.22, C:0.23, G:0.23, T:0.32
Consensus pattern (66 bp):
CGCAGCTCTTTGTGAGCGTCCTGTTTATCGATCAATTGTGATTCCTGCATACATTGCAGACACAA
A
Found at i:86258359 original size:16 final size:16
Alignment explanation
Indices: 86258338--86258369 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
86258328 ATTTAAATGA
86258338 ATGGTAAGTTTATTAT
1 ATGGTAAGTTTATTAT
86258354 ATGGTAAGTTTATTAT
1 ATGGTAAGTTTATTAT
86258370 CATGTTATAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.19, T:0.50
Consensus pattern (16 bp):
ATGGTAAGTTTATTAT
Found at i:86260080 original size:18 final size:18
Alignment explanation
Indices: 86260057--86260091 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
86260047 CATAAACCAC
86260057 GATAATTCAAATTAGAAT
1 GATAATTCAAATTAGAAT
86260075 GATAATTCAAATTAGAA
1 GATAATTCAAATTAGAA
86260092 CAATTCACTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.51, C:0.06, G:0.11, T:0.31
Consensus pattern (18 bp):
GATAATTCAAATTAGAAT
Found at i:86260663 original size:22 final size:21
Alignment explanation
Indices: 86260629--86260678 Score: 52
Period size: 22 Copynumber: 2.4 Consensus size: 21
86260619 ACACGACAAT
86260629 AGAGGCA-TCGAAGATG-AGTAA
1 AGAGGCACTCGAAG-TGCAG-AA
86260650 CAGAGGCACT-GAAGTGCAGAA
1 -AGAGGCACTCGAAGTGCAGAA
86260671 AGAGGCAC
1 AGAGGCAC
86260679 CAATGTGCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
20 8 0.31
21 4 0.15
22 13 0.50
23 1 0.04
ACGTcount: A:0.40, C:0.16, G:0.34, T:0.10
Consensus pattern (21 bp):
AGAGGCACTCGAAGTGCAGAA
Found at i:86267977 original size:43 final size:43
Alignment explanation
Indices: 86267929--86268013 Score: 134
Period size: 43 Copynumber: 2.0 Consensus size: 43
86267919 GCGCCGATAT
*
86267929 AGAACATGACCTTTAGTGACACTTTTACCAAAAATACCACTAA
1 AGAACATGACCTTTAGCGACACTTTTACCAAAAATACCACTAA
* * *
86267972 AGAACATGACCTTTAGCGGCACTTTTACCACAAATGCCACTA
1 AGAACATGACCTTTAGCGACACTTTTACCAAAAATACCACTA
86268014 GCTTTAGCTG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.38, C:0.26, G:0.12, T:0.25
Consensus pattern (43 bp):
AGAACATGACCTTTAGCGACACTTTTACCAAAAATACCACTAA
Found at i:86273485 original size:26 final size:26
Alignment explanation
Indices: 86273447--86273504 Score: 107
Period size: 26 Copynumber: 2.2 Consensus size: 26
86273437 CATGAAATTC
86273447 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
*
86273473 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
86273499 TTATCA
1 TTATCA
86273505 ATTTGTATCA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.36, C:0.22, G:0.05, T:0.36
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCTA
Found at i:86274585 original size:28 final size:28
Alignment explanation
Indices: 86274554--86274631 Score: 122
Period size: 28 Copynumber: 2.8 Consensus size: 28
86274544 GGTATCAAAT
*
86274554 ATGACACTTAGTGTGCGAAATATTGAGA
1 ATGACACTTAGTGTGCGAAATATTAAGA
86274582 ATGACACTTAGTGTGCGAGAA-ATTAAGA
1 ATGACACTTAGTGTGCGA-AATATTAAGA
*
86274610 ATGACATTTAGTGTGCGAAATA
1 ATGACACTTAGTGTGCGAAATA
86274632 GCGAATGATT
Statistics
Matches: 46, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.04
28 42 0.91
29 2 0.04
ACGTcount: A:0.37, C:0.10, G:0.24, T:0.28
Consensus pattern (28 bp):
ATGACACTTAGTGTGCGAAATATTAAGA
Found at i:86278283 original size:46 final size:46
Alignment explanation
Indices: 86278216--86278305 Score: 180
Period size: 46 Copynumber: 2.0 Consensus size: 46
86278206 ACATGCAATT
86278216 TATAAAATTTCTTATCAATACTCTAACACATGCATCTAATCACTTC
1 TATAAAATTTCTTATCAATACTCTAACACATGCATCTAATCACTTC
86278262 TATAAAATTTCTTATCAATACTCTAACACATGCATCTAATCACT
1 TATAAAATTTCTTATCAATACTCTAACACATGCATCTAATCACT
86278306 CGGTAAATCA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.38, C:0.23, G:0.02, T:0.37
Consensus pattern (46 bp):
TATAAAATTTCTTATCAATACTCTAACACATGCATCTAATCACTTC
Found at i:86278303 original size:25 final size:25
Alignment explanation
Indices: 86278229--86278303 Score: 77
Period size: 25 Copynumber: 3.2 Consensus size: 25
86278219 AAAATTTCTT
86278229 ATCAATACTCTAACACATGCATCTA
1 ATCAATACTCTAACACATGCATCTA
* * * * *
86278254 ATCACTTCTATAA-A-AT--TTCTT
1 ATCAATACTCTAACACATGCATCTA
86278275 ATCAATACTCTAACACATGCATCTA
1 ATCAATACTCTAACACATGCATCTA
86278300 ATCA
1 ATCA
86278304 CTCGGTAAAT
Statistics
Matches: 36, Mismatches: 10, Indels: 8
0.67 0.19 0.15
Matches are distributed among these distances:
21 13 0.36
22 1 0.03
23 4 0.11
24 1 0.03
25 17 0.47
ACGTcount: A:0.39, C:0.25, G:0.03, T:0.33
Consensus pattern (25 bp):
ATCAATACTCTAACACATGCATCTA
Found at i:86287809 original size:14 final size:14
Alignment explanation
Indices: 86287790--86287820 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
86287780 AATGAACTAT
86287790 CAAATATTATAGGC
1 CAAATATTATAGGC
*
86287804 CAAATATTTTAGGC
1 CAAATATTATAGGC
86287818 CAA
1 CAA
86287821 CTCATAATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.42, C:0.16, G:0.13, T:0.29
Consensus pattern (14 bp):
CAAATATTATAGGC
Found at i:86289103 original size:50 final size:50
Alignment explanation
Indices: 86288966--86289112 Score: 159
Period size: 50 Copynumber: 2.9 Consensus size: 50
86288956 CTATCTTTTG
* * * * * *
86288966 CACATATTGGCCTACACTTAATACTACACATGTGATCGAAGCTATCGGGTA
1 CACATAGTAGCCTACACTTAGTACTACACATGTGA-CCAAACCATCGGGTA
* * *
86289017 CGCATAGTAGCCTACACTTAGTACTACACATTTGACCAAACCATCTGGTA
1 CACATAGTAGCCTACACTTAGTACTACACATGTGACCAAACCATCGGGTA
* * *
86289067 CACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAGACCAT
1 CACATAGTAGCCTACACTTAGTACTACACATGTGACC-AA-ACCAT
86289113 TTTAAACACA
Statistics
Matches: 80, Mismatches: 14, Indels: 3
0.82 0.14 0.03
Matches are distributed among these distances:
50 43 0.54
51 32 0.40
52 5 0.06
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.25
Consensus pattern (50 bp):
CACATAGTAGCCTACACTTAGTACTACACATGTGACCAAACCATCGGGTA
Found at i:86296639 original size:24 final size:24
Alignment explanation
Indices: 86296612--86296671 Score: 68
Period size: 24 Copynumber: 2.5 Consensus size: 24
86296602 ATGTATTATA
86296612 TATATTTAATTATTACGATGGTTT
1 TATATTTAATTATTACGATGGTTT
** **
86296636 TATATAAAATTATTATTATGGTTT
1 TATATTTAATTATTACGATGGTTT
*
86296660 TATAATT-ATTAT
1 TATATTTAATTAT
86296672 GATTATTTAA
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
23 5 0.17
24 24 0.83
ACGTcount: A:0.35, C:0.02, G:0.08, T:0.55
Consensus pattern (24 bp):
TATATTTAATTATTACGATGGTTT
Found at i:86296794 original size:23 final size:24
Alignment explanation
Indices: 86296768--86296830 Score: 83
Period size: 27 Copynumber: 2.5 Consensus size: 24
86296758 GGTACATTTG
86296768 TAATTTAA-ATACTTAATTACTTA
1 TAATTTAATATACTTAATTACTTA
86296791 TAATTTAAATATATACTTAATTACTTA
1 TAATTT--A-ATATACTTAATTACTTA
86296818 TAATTTAAGTATA
1 TAATTTAA-TATA
86296831 AAGATATTTG
Statistics
Matches: 35, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
23 6 0.17
24 1 0.03
25 6 0.17
26 1 0.03
27 21 0.60
ACGTcount: A:0.44, C:0.06, G:0.02, T:0.48
Consensus pattern (24 bp):
TAATTTAATATACTTAATTACTTA
Found at i:86296814 original size:27 final size:27
Alignment explanation
Indices: 86296776--86296830 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
86296766 TGTAATTTAA
86296776 ATACTTAATTACTTATAATTTAAATAT
1 ATACTTAATTACTTATAATTTAAATAT
*
86296803 ATACTTAATTACTTATAATTTAAGTAT
1 ATACTTAATTACTTATAATTTAAATAT
86296830 A
1 A
86296831 AAGATATTTG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.44, C:0.07, G:0.02, T:0.47
Consensus pattern (27 bp):
ATACTTAATTACTTATAATTTAAATAT
Found at i:86297630 original size:16 final size:17
Alignment explanation
Indices: 86297580--86297630 Score: 59
Period size: 19 Copynumber: 2.9 Consensus size: 17
86297570 ATGGAAATAT
*
86297580 AATCTTTAAGGATATGC
1 AATCTTGAAGGATATGC
*
86297597 AATCTTAGATATGATATGC
1 AATCTT-GA-AGGATATGC
86297616 AATCTTGAA-GATATG
1 AATCTTGAAGGATATG
86297631 ATCTTGTAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
16 6 0.20
17 7 0.23
18 3 0.10
19 14 0.47
ACGTcount: A:0.37, C:0.10, G:0.18, T:0.35
Consensus pattern (17 bp):
AATCTTGAAGGATATGC
Found at i:86297649 original size:22 final size:21
Alignment explanation
Indices: 86297590--86297632 Score: 72
Period size: 19 Copynumber: 2.1 Consensus size: 21
86297580 AATCTTTAAG
86297590 GATATGCAATCTT--AGATAT
1 GATATGCAATCTTGAAGATAT
86297609 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTTGAAGATAT
86297630 GAT
1 GAT
86297633 CTTGTAATCT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 13 0.59
21 9 0.41
ACGTcount: A:0.37, C:0.09, G:0.19, T:0.35
Consensus pattern (21 bp):
GATATGCAATCTTGAAGATAT
Found at i:86300540 original size:25 final size:26
Alignment explanation
Indices: 86300512--86300569 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 26
86300502 TCCGATATAT
86300512 GGCTCTTC-GGAGCTTCCTGATTAAA
1 GGCTCTTCAGGAGCTTCCTGATTAAA
* *
86300537 GGCTCTTTCATGAGCTTTCTGATTAAA
1 GGCTC-TTCAGGAGCTTCCTGATTAAA
86300564 GGCTCT
1 GGCTCT
86300570 CTAGAACTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
25 5 0.17
26 4 0.14
27 20 0.69
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.36
Consensus pattern (26 bp):
GGCTCTTCAGGAGCTTCCTGATTAAA
Found at i:86300613 original size:25 final size:24
Alignment explanation
Indices: 86300584--86300678 Score: 86
Period size: 24 Copynumber: 3.9 Consensus size: 24
86300574 AACTTTTTGA
86300584 TATTGGCTCACTTGAAGCTTCCCGT
1 TATTGGCTCACTTG-AGCTTCCCGT
* *
86300609 TATTGGTTC-GTATGAGCTTCCCGT
1 TATTGGCTCACT-TGAGCTTCCCGT
* * *
86300633 TAATGGCTCTCTGGAGCTTCCCGT
1 TATTGGCTCACTTGAGCTTCCCGT
*
86300657 TCCTTGGCTCA-TATGAGCTTCC
1 T-ATTGGCTCACT-TGAGCTTCC
86300679 TGTTTACATG
Statistics
Matches: 56, Mismatches: 10, Indels: 8
0.76 0.14 0.11
Matches are distributed among these distances:
24 31 0.55
25 25 0.45
ACGTcount: A:0.14, C:0.27, G:0.22, T:0.37
Consensus pattern (24 bp):
TATTGGCTCACTTGAGCTTCCCGT
Found at i:86300628 original size:24 final size:23
Alignment explanation
Indices: 86300599--86300678 Score: 88
Period size: 24 Copynumber: 3.3 Consensus size: 23
86300589 GCTCACTTGA
*
86300599 AGCTTCCCGTTATTGGTTCGTATG
1 AGCTTCCCGTTATTGGCTC-TATG
* *
86300623 AGCTTCCCGTTAATGGCTCTCTGG
1 AGCTTCCCGTTATTGGCTCTAT-G
*
86300647 AGCTTCCCGTTCCTTGGCTCATATG
1 AGCTTCCCGTT-ATTGGCTC-TATG
86300672 AGCTTCC
1 AGCTTCC
86300679 TGTTTACATG
Statistics
Matches: 47, Mismatches: 6, Indels: 5
0.81 0.10 0.09
Matches are distributed among these distances:
23 2 0.04
24 29 0.62
25 14 0.30
26 2 0.04
ACGTcount: A:0.12, C:0.29, G:0.23, T:0.36
Consensus pattern (23 bp):
AGCTTCCCGTTATTGGCTCTATG
Found at i:86302319 original size:13 final size:13
Alignment explanation
Indices: 86302303--86302327 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
86302293 TATTTTAAAT
86302303 TAAAAATAAAAAA
1 TAAAAATAAAAAA
86302316 TAAAAATAAAAA
1 TAAAAATAAAAA
86302328 TTCTAAAAGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (13 bp):
TAAAAATAAAAAA
Found at i:86306107 original size:24 final size:25
Alignment explanation
Indices: 86306080--86306139 Score: 70
Period size: 25 Copynumber: 2.5 Consensus size: 25
86306070 GAGCATTCAA
86306080 TTAT-TAGCTCTCATGAGCTTCCCG
1 TTATATAGCTCTCATGAGCTTCCCG
* * **
86306104 TTATATGGTTCTTGTGAGCTTCCCG
1 TTATATAGCTCTCATGAGCTTCCCG
86306129 TT-TATAGCTCT
1 TTATATAGCTCT
86306140 TCGGATCATT
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
24 11 0.38
25 18 0.62
ACGTcount: A:0.15, C:0.23, G:0.18, T:0.43
Consensus pattern (25 bp):
TTATATAGCTCTCATGAGCTTCCCG
Found at i:86309341 original size:57 final size:57
Alignment explanation
Indices: 86309197--86309344 Score: 140
Period size: 57 Copynumber: 2.6 Consensus size: 57
86309187 TTGACCTCAT
* * *
86309197 TATAAAAAGGATTTAGCCTGAACGGGTAATACTAATGTAAACCCTCTCGAGCATATGT
1 TATAAAAAGGATTTAGCCTGAAC-AGTAATCCTAATGTAAACCCTCTCGAGCATATGC
* ** * * * *
86309255 TACAATTAGGGTTTAGCCT-AGACAGGTAATCCTAAT-TGAGCTCT-TCTGAGCATATGC
1 TATAAAAAGGATTTAGCCTGA-ACA-GTAATCCTAATGTAAACCCTCTC-GAGCATATGC
86309312 TATAAAAAGGATTTAGCCTGAACTAGTAATCCT
1 TATAAAAAGGATTTAGCCTGAAC-AGTAATCCT
86309345 GTTATACAAT
Statistics
Matches: 71, Mismatches: 14, Indels: 11
0.74 0.15 0.11
Matches are distributed among these distances:
56 2 0.03
57 40 0.56
58 29 0.41
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.30
Consensus pattern (57 bp):
TATAAAAAGGATTTAGCCTGAACAGTAATCCTAATGTAAACCCTCTCGAGCATATGC
Found at i:86315324 original size:20 final size:20
Alignment explanation
Indices: 86315296--86315339 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
86315286 TCCCACTTTC
*
86315296 TCATAATGTCATTT-ATTCTT
1 TCATAATGT-ATTTCATACTT
*
86315316 TCATCATGTATTTCATACTT
1 TCATAATGTATTTCATACTT
86315336 TCAT
1 TCAT
86315340 GATAGTAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 4 0.19
20 17 0.81
ACGTcount: A:0.25, C:0.18, G:0.05, T:0.52
Consensus pattern (20 bp):
TCATAATGTATTTCATACTT
Found at i:86319605 original size:41 final size:40
Alignment explanation
Indices: 86319560--86319666 Score: 144
Period size: 40 Copynumber: 2.6 Consensus size: 40
86319550 GTGAAGGAAT
*
86319560 ATATCCGGACTTATAGT-CCGCAGGCTTTGTGCTGGAAATAG
1 ATATCCGG-CTTA-AATCCCGCAGGCTTTGTGCTGGAAATAG
* *
86319601 ATATCCGGGTTAAATCCCGCAGGCTTTGTGCTGGTAATAG
1 ATATCCGGCTTAAATCCCGCAGGCTTTGTGCTGGAAATAG
* *
86319641 ATATCCGGGTTAAATACCGCAGGCTT
1 ATATCCGGCTTAAATCCCGCAGGCTT
86319667 AATACAGGTG
Statistics
Matches: 61, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
39 2 0.03
40 51 0.84
41 8 0.13
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (40 bp):
ATATCCGGCTTAAATCCCGCAGGCTTTGTGCTGGAAATAG
Found at i:86319624 original size:40 final size:40
Alignment explanation
Indices: 86319577--86319666 Score: 162
Period size: 40 Copynumber: 2.2 Consensus size: 40
86319567 GACTTATAGT
*
86319577 CCGCAGGCTTTGTGCTGGAAATAGATATCCGGGTTAAATC
1 CCGCAGGCTTTGTGCTGGAAATAGATATCCGGGTTAAATA
*
86319617 CCGCAGGCTTTGTGCTGGTAATAGATATCCGGGTTAAATA
1 CCGCAGGCTTTGTGCTGGAAATAGATATCCGGGTTAAATA
86319657 CCGCAGGCTT
1 CCGCAGGCTT
86319667 AATACAGGTG
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 48 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (40 bp):
CCGCAGGCTTTGTGCTGGAAATAGATATCCGGGTTAAATA
Found at i:86322664 original size:33 final size:33
Alignment explanation
Indices: 86322627--86322777 Score: 112
Period size: 33 Copynumber: 4.7 Consensus size: 33
86322617 TACCCAAATG
* *
86322627 GTACAACTTGAAAAGGTTATGTACACCTTGTGT
1 GTACAACTTGAAAAGGTAAGGTACACCTTGTGT
* * *
86322660 GTAC-ACTTG-AAAGGTTAGGTATACTTTGTGT
1 GTACAACTTGAAAAGGTAAGGTACACCTTGTGT
* * * * *
86322691 ATACCA-TATGAAAAGGAAAGGTATACTTTGTGT
1 GTACAACT-TGAAAAGGTAAGGTACACCTTGTGT
* * * **
86322724 GTACCACTTGGAAAGG-AATGTACACCTTAAGT
1 GTACAACTTGAAAAGGTAAGGTACACCTTGTGT
* *
86322756 GTACAACTAGAAAAGGAAAGGT
1 GTACAACTTGAAAAGGTAAGGT
86322778 CCATCAGAAA
Statistics
Matches: 96, Mismatches: 17, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
31 23 0.24
32 32 0.33
33 40 0.42
34 1 0.01
ACGTcount: A:0.35, C:0.13, G:0.23, T:0.29
Consensus pattern (33 bp):
GTACAACTTGAAAAGGTAAGGTACACCTTGTGT
Found at i:86324772 original size:14 final size:14
Alignment explanation
Indices: 86324753--86324780 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
86324743 ACAAAAAGAA
86324753 AATATCATCTTATT
1 AATATCATCTTATT
86324767 AATATCATCTTATT
1 AATATCATCTTATT
86324781 TTCTCATCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.14, G:0.00, T:0.50
Consensus pattern (14 bp):
AATATCATCTTATT
Found at i:86328070 original size:24 final size:23
Alignment explanation
Indices: 86328007--86328106 Score: 78
Period size: 24 Copynumber: 4.2 Consensus size: 23
86327997 GACTCACCAT
*
86328007 AGCTCGTATGAGCTTACTGATATATC
1 AGCTCATATGAGCTTACT-AT-T-TC
** * *
86328033 AGCTTGTAAGAGCTTACTATTATT
1 AGCTCATATGAGCTTACTATT-TC
* *
86328057 AGCTCAT-TGAAGCTTACCACTTC
1 AGCTCATATG-AGCTTACTATTTC
86328080 AGCTCATATGAGCTTACTA-TTC
1 AGCTCATATGAGCTTACTATTTC
86328102 AGCTC
1 AGCTC
86328107 GATAAAGCTT
Statistics
Matches: 62, Mismatches: 10, Indels: 8
0.77 0.12 0.10
Matches are distributed among these distances:
22 8 0.13
23 17 0.27
24 19 0.31
25 2 0.03
26 16 0.26
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.35
Consensus pattern (23 bp):
AGCTCATATGAGCTTACTATTTC
Found at i:86328115 original size:22 final size:23
Alignment explanation
Indices: 86328057--86328119 Score: 69
Period size: 23 Copynumber: 2.8 Consensus size: 23
86328047 TACTATTATT
86328057 AGCTCAT-TGAAGCTTACCACTTC
1 AGCTCATAT-AAGCTTACCACTTC
* *
86328080 AGCTCATATGAGCTTACTA-TTC
1 AGCTCATATAAGCTTACCACTTC
86328102 AGCTCGATA-AAGCTTACC
1 AGCTC-ATATAAGCTTACC
86328120 GTTTAAGCTA
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
22 15 0.44
23 18 0.53
24 1 0.03
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.30
Consensus pattern (23 bp):
AGCTCATATAAGCTTACCACTTC
Found at i:86335676 original size:24 final size:23
Alignment explanation
Indices: 86335649--86335724 Score: 68
Period size: 23 Copynumber: 3.3 Consensus size: 23
86335639 CAGCTTGTAA
*
86335649 GAGCTTATTGTTATCAGCTCAT-T
1 GAGCTTATTGTT-TCAACTCATAT
* *
86335672 GGAGCTTATCGTTTCAACTCGTAT
1 -GAGCTTATTGTTTCAACTCATAT
*
86335696 GAGCTTATTG-TTCAGCTCGATA-
1 GAGCTTATTGTTTCAACTC-ATAT
86335718 GAGCTTA
1 GAGCTTA
86335725 CCATTTCAGC
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
22 14 0.32
23 18 0.41
24 12 0.27
ACGTcount: A:0.22, C:0.18, G:0.21, T:0.38
Consensus pattern (23 bp):
GAGCTTATTGTTTCAACTCATAT
Found at i:86335703 original size:23 final size:22
Alignment explanation
Indices: 86335673--86335724 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 22
86335663 CAGCTCATTG
86335673 GAGCTTATCGTTTCAACTCG-TA
1 GAGCTTATCG-TTCAACTCGATA
* *
86335695 TGAGCTTATTGTTCAGCTCGATA
1 -GAGCTTATCGTTCAACTCGATA
86335718 GAGCTTA
1 GAGCTTA
86335725 CCATTTCAGC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
22 15 0.58
23 11 0.42
ACGTcount: A:0.23, C:0.19, G:0.21, T:0.37
Consensus pattern (22 bp):
GAGCTTATCGTTCAACTCGATA
Found at i:86336399 original size:33 final size:33
Alignment explanation
Indices: 86336362--86336426 Score: 130
Period size: 33 Copynumber: 2.0 Consensus size: 33
86336352 TGGTACTATG
86336362 TTTTGGTTGAATTAAATGTTCAATTATGGTATT
1 TTTTGGTTGAATTAAATGTTCAATTATGGTATT
86336395 TTTTGGTTGAATTAAATGTTCAATTATGGTAT
1 TTTTGGTTGAATTAAATGTTCAATTATGGTAT
86336427 GTTACCGATT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.28, C:0.03, G:0.18, T:0.51
Consensus pattern (33 bp):
TTTTGGTTGAATTAAATGTTCAATTATGGTATT
Found at i:86338788 original size:28 final size:27
Alignment explanation
Indices: 86338726--86338836 Score: 96
Period size: 28 Copynumber: 3.9 Consensus size: 27
86338716 CCTATATATG
* * *
86338726 TATGGCCCACTAGGCCCAATCTCTTTCA
1 TATGG-CCACTAGGCCAAATCACATTCA
* * * *
86338754 TACGGCCTACTAGGCCTATTCACATTTA
1 TATGGCC-ACTAGGCCAAATCACATTCA
* *
86338782 TGTGGCCCATTAGGCCCAAATCACATTCA
1 TATGG-CCACTAGG-CCAAATCACATTCA
86338811 TATGGCCACTAGGCCCAAATCACATT
1 TATGGCCACTAGG-CCAAATCACATT
86338837 TACAGTCATG
Statistics
Matches: 66, Mismatches: 14, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
27 2 0.03
28 47 0.71
29 17 0.26
ACGTcount: A:0.26, C:0.32, G:0.15, T:0.27
Consensus pattern (27 bp):
TATGGCCACTAGGCCAAATCACATTCA
Found at i:86339085 original size:16 final size:16
Alignment explanation
Indices: 86339051--86339101 Score: 61
Period size: 16 Copynumber: 3.2 Consensus size: 16
86339041 GTAGCCAAAC
86339051 TTTCGACTTTTC-GGCA
1 TTTCGACTTTTCAGG-A
*
86339067 TTTC-AGCTTTTCAGTA
1 TTTCGA-CTTTTCAGGA
86339083 TTTCGACTTTTCAGGA
1 TTTCGACTTTTCAGGA
86339099 TTT
1 TTT
86339102 ACCGATCTAC
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
15 1 0.03
16 27 0.90
17 2 0.07
ACGTcount: A:0.16, C:0.20, G:0.16, T:0.49
Consensus pattern (16 bp):
TTTCGACTTTTCAGGA
Found at i:86346598 original size:28 final size:28
Alignment explanation
Indices: 86346495--86346602 Score: 110
Period size: 28 Copynumber: 3.8 Consensus size: 28
86346485 CCTATAAATG
* *
86346495 TATGGCCCACTAGGCCCAATCTCTTTCA
1 TATGGCCCACTAGGCCCAATCACATTCA
* * * * *
86346523 TATAGCCCATTAGGCCCATTCATATTTA
1 TATGGCCCACTAGGCCCAATCACATTCA
* *
86346551 TGTGGCCCATTAGGCCCAAATCACATTCA
1 TATGGCCCACTAGGCCC-AATCACATTCA
86346580 TATGG-CCACTAGGCCCAAATCAC
1 TATGGCCCACTAGGCCC-AATCAC
86346603 GTTTATAGTC
Statistics
Matches: 65, Mismatches: 14, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
28 53 0.82
29 12 0.18
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (28 bp):
TATGGCCCACTAGGCCCAATCACATTCA
Found at i:86349189 original size:64 final size:63
Alignment explanation
Indices: 86349108--86349291 Score: 208
Period size: 67 Copynumber: 2.9 Consensus size: 63
86349098 AGACATTATG
* *
86349108 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATA
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATA
* * * * *
86349171 TATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGA
1 -ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGA
86349236 TA
62 TA
** * * *
86349238 AACTAGCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAGC
86349292 CGAACTTTAT
Statistics
Matches: 99, Mismatches: 17, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 24 0.24
67 30 0.30
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (63 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATA
Found at i:86363632 original size:30 final size:30
Alignment explanation
Indices: 86363597--86363656 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
86363587 TATTTTATTA
86363597 TTAATTTTGTTATTATTTTAAAGGCATTTG
1 TTAATTTTGTTATTATTTTAAAGGCATTTG
* *
86363627 TTAATTTTGTTATTATTTTAGAGGTATTTG
1 TTAATTTTGTTATTATTTTAAAGGCATTTG
86363657 CTTGTTAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.25, C:0.02, G:0.15, T:0.58
Consensus pattern (30 bp):
TTAATTTTGTTATTATTTTAAAGGCATTTG
Found at i:86366313 original size:15 final size:16
Alignment explanation
Indices: 86366287--86366316 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
86366277 AAGATATTAA
86366287 AAAAAATGAAAATTCC
1 AAAAAATGAAAATTCC
86366303 AAAAAAT-AAAATTC
1 AAAAAATGAAAATTC
86366317 ACACTTAGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.67, C:0.10, G:0.03, T:0.20
Consensus pattern (16 bp):
AAAAAATGAAAATTCC
Found at i:86366475 original size:22 final size:21
Alignment explanation
Indices: 86366446--86366487 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
86366436 TAAAATTTAT
*
86366446 TACTTTTCCATCTTTCCACTC
1 TACTTTTCCATCCTTCCACTC
86366467 TACTCTTTCCATCCTTCCACT
1 TACT-TTTCCATCCTTCCACT
86366488 TCCCCGTTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.14, C:0.40, G:0.00, T:0.45
Consensus pattern (21 bp):
TACTTTTCCATCCTTCCACTC
Found at i:86372516 original size:22 final size:22
Alignment explanation
Indices: 86372491--86372535 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
86372481 TTTAATAAAG
86372491 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
* *
86372513 AAAATATTTACAGAATATTCCT
1 AAAATATCTACAAAATATTCCT
86372535 A
1 A
86372536 CACTCCCCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:86376231 original size:22 final size:22
Alignment explanation
Indices: 86376203--86376247 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
86376193 CACCTAAAAG
86376203 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
* *
86376225 AAAATATTTACAGAATATTCCT
1 AAAATATCTACAAAATATTCCT
86376247 A
1 A
86376248 CAATTTCCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:86381217 original size:15 final size:15
Alignment explanation
Indices: 86381199--86381230 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
86381189 TGTGTTTGAT
*
86381199 AAAAATTAAGTGCTG
1 AAAAATTAAGTACTG
86381214 AAAAATTAAGTACTG
1 AAAAATTAAGTACTG
86381229 AA
1 AA
86381231 TTTTTATTGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.53, C:0.06, G:0.16, T:0.25
Consensus pattern (15 bp):
AAAAATTAAGTACTG
Found at i:86390730 original size:27 final size:26
Alignment explanation
Indices: 86390646--86390719 Score: 103
Period size: 26 Copynumber: 2.8 Consensus size: 26
86390636 TTTCAAGCGT
* * * *
86390646 AATATGGAAGGAAACTTTTGTGGCGT
1 AATATGAAAGGAAGCCTTTGTGGCGC
86390672 AATATGAAAGGAAGCCTTTGTGGCGC
1 AATATGAAAGGAAGCCTTTGTGGCGC
86390698 AATATGAAAGGAATGCCTTTGT
1 AATATGAAAGGAA-GCCTTTGT
86390720 TGCGAATTAT
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
26 35 0.81
27 8 0.19
ACGTcount: A:0.32, C:0.11, G:0.28, T:0.28
Consensus pattern (26 bp):
AATATGAAAGGAAGCCTTTGTGGCGC
Found at i:86395742 original size:42 final size:44
Alignment explanation
Indices: 86395675--86395820 Score: 165
Period size: 43 Copynumber: 3.4 Consensus size: 44
86395665 TCCTAGATAT
* * * * *
86395675 GTCTTACATGTTATCACATAT-CGATGCCACTGTCCCAGATAGG
1 GTCTTACACGTAATCACATATACGATGCCAATGTCCCAGACACG
*
86395718 GTCTTACACG-AATCA-ATATACGATGCCAATGTCTCAGACACG
1 GTCTTACACGTAATCACATATACGATGCCAATGTCCCAGACACG
* * * *
86395760 GTCTTACACGTAATCACA-ATACAATGCCAATATCCAAGACATG
1 GTCTTACACGTAATCACATATACGATGCCAATGTCCCAGACACG
*
86395803 GTCTTACATGTAATCACA
1 GTCTTACACGTAATCACA
86395821 ACTCAATAAC
Statistics
Matches: 88, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
41 4 0.05
42 32 0.36
43 51 0.58
44 1 0.01
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.27
Consensus pattern (44 bp):
GTCTTACACGTAATCACATATACGATGCCAATGTCCCAGACACG
Found at i:86395821 original size:43 final size:42
Alignment explanation
Indices: 86395652--86395821 Score: 143
Period size: 43 Copynumber: 4.0 Consensus size: 42
86395642 ACATAAGCTC
* * *
86395652 ATACAATGCC-ATATCCTAGATAT-GTCTTACATGTTATCAC-
1 ATACAATGCCAATATCC-AGACATGGTCTTACACGTAATCACA
* * * * *
86395692 ATATCGATGCCACTGTCCCAGATAGGGTCTTACACG-AATCA-A
1 ATA-CAATGCCAATAT-CCAGACATGGTCTTACACGTAATCACA
* * *
86395734 TATACGATGCCAATGTCTCAGACACGGTCTTACACGTAATCACA
1 -ATACAATGCCAATATC-CAGACATGGTCTTACACGTAATCACA
*
86395778 ATACAATGCCAATATCCAAGACATGGTCTTACATGTAATCACA
1 ATACAATGCCAATATCC-AGACATGGTCTTACACGTAATCACA
86395821 A
1 A
86395822 CTCAATAACC
Statistics
Matches: 107, Mismatches: 13, Indels: 17
0.78 0.09 0.12
Matches are distributed among these distances:
40 3 0.03
41 7 0.07
42 39 0.36
43 57 0.53
44 1 0.01
ACGTcount: A:0.34, C:0.25, G:0.14, T:0.27
Consensus pattern (42 bp):
ATACAATGCCAATATCCAGACATGGTCTTACACGTAATCACA
Found at i:86406163 original size:20 final size:20
Alignment explanation
Indices: 86406138--86406176 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
86406128 TATATTCGTA
*
86406138 AAATTTTAGAATTTTTCATC
1 AAATTTTAGAACTTTTCATC
*
86406158 AAATTTTATAACTTTTCAT
1 AAATTTTAGAACTTTTCAT
86406177 TTTAGCCCCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.36, C:0.10, G:0.03, T:0.51
Consensus pattern (20 bp):
AAATTTTAGAACTTTTCATC
Found at i:86412311 original size:20 final size:20
Alignment explanation
Indices: 86412286--86412382 Score: 176
Period size: 20 Copynumber: 4.8 Consensus size: 20
86412276 ACAATATTGA
86412286 TATGATATGCACATGATATG
1 TATGATATGCACATGATATG
86412306 TATGATATGCACATGATATG
1 TATGATATGCACATGATATG
*
86412326 TACGATATGCACATGATATG
1 TATGATATGCACATGATATG
*
86412346 TACGATATGCACATGATATG
1 TATGATATGCACATGATATG
86412366 TATGATATGCACATGAT
1 TATGATATGCACATGAT
86412383 GTATTCATAA
Statistics
Matches: 75, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 75 1.00
ACGTcount: A:0.35, C:0.12, G:0.20, T:0.33
Consensus pattern (20 bp):
TATGATATGCACATGATATG
Found at i:86412312 original size:9 final size:9
Alignment explanation
Indices: 86412298--86412374 Score: 55
Period size: 9 Copynumber: 7.9 Consensus size: 9
86412288 TGATATGCAC
86412298 ATGATATGT
1 ATGATATGT
*
86412307 ATGATATGCAC
1 ATGATATG--T
86412318 ATGATATGT
1 ATGATATGT
* *
86412327 ACGATATGCAC
1 ATGATATG--T
86412338 ATGATATGT
1 ATGATATGT
* *
86412347 ACGATATGCAC
1 ATGATATG--T
86412358 ATGATATGT
1 ATGATATGT
86412367 ATGATATG
1 ATGATATG
86412375 CACATGATGT
Statistics
Matches: 52, Mismatches: 10, Indels: 12
0.70 0.14 0.16
Matches are distributed among these distances:
9 30 0.58
11 22 0.42
ACGTcount: A:0.35, C:0.10, G:0.21, T:0.34
Consensus pattern (9 bp):
ATGATATGT
Found at i:86412735 original size:31 final size:31
Alignment explanation
Indices: 86412700--86412763 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
86412690 CATTTACAGT
*
86412700 AAAGGCTTTGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
86412731 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
86412762 AA
1 AA
86412764 CATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.38, C:0.14, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Done.