Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 251 of 295
Found at i:86416639 original size:20 final size:21
Alignment explanation
Indices: 86416605--86416643 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
86416595 TTTACAGCAC
86416605 ATGTATTCATAAAATTTTAGA
1 ATGTATTCATAAAATTTTAGA
*
86416626 ATGT-TTCATCAAATTTTA
1 ATGTATTCATAAAATTTTA
86416644 CAACTTTTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.38, C:0.08, G:0.08, T:0.46
Consensus pattern (21 bp):
ATGTATTCATAAAATTTTAGA
Found at i:86419597 original size:47 final size:47
Alignment explanation
Indices: 86419528--86419623 Score: 156
Period size: 47 Copynumber: 2.0 Consensus size: 47
86419518 AACTCTAAAG
*
86419528 TAAGACATTTTGGCGAGTTCCTTGGTACCTAAAGTTATAGTCTGTAT
1 TAAGACATTTTGGCGAGTTCCTTCGTACCTAAAGTTATAGTCTGTAT
* * *
86419575 TAAGACATTTTGGTGAGTTCCTTCGTACCTAGAGTTATAGTTTGTAT
1 TAAGACATTTTGGCGAGTTCCTTCGTACCTAAAGTTATAGTCTGTAT
86419622 TA
1 TA
86419624 TTTTGGTTAA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.25, C:0.14, G:0.21, T:0.41
Consensus pattern (47 bp):
TAAGACATTTTGGCGAGTTCCTTCGTACCTAAAGTTATAGTCTGTAT
Found at i:86424455 original size:45 final size:46
Alignment explanation
Indices: 86424396--86424757 Score: 191
Period size: 50 Copynumber: 7.6 Consensus size: 46
86424386 AGAGCCATTA
* *
86424396 TAAGATCATGTCTAGGACATGGCA-CTGGCTTGATATGTGTC-AGTG
1 TAAGACCATGTCTAGGACATGGCATC-GGCTTGATATGAGTCTAGTG
* * * *
86424441 TAAGACCATGTCTAGGACATGGCATCGGCATTAAGACGAGAGCTAGTG
1 TAAGACCATGTCTAGGACATGGCATCGGC-TTGATATGAG-TCTAGTG
* * * *
86424489 TAAGACAATGTTTGGGACATGGCATCAGCCTTGAGATATGAAAG-CTAGTG
1 TAAGACCATGTCTAGGACATGGCATC-GGCTT--GATATG--AGTCTAGTG
* * * * * *
86424539 TAAAACCATGTCTGGGACATGACATCGGCTTGATATGTGTC-AATC
1 TAAGACCATGTCTAGGACATGGCATCGGCTTGATATGAGTCTAGTG
* * * * *
86424584 TAAGACCATGTCTAGGACATGGTATTGGCACCAATAGATGAT-AGTC-GGTA
1 TAAGACCATGTCTAGGACATGGCATCGG---C--TTGAT-ATGAGTCTAGTG
* *
86424634 TAAGACCATGTCTGGGACATGGCATCAGCCTTGATATATGAGAGTC-AGTG
1 TAAGACCATGTCTAGGACATGGCATC-GGCTTG--ATAT--GAGTCTAGTG
* * * * * *
86424684 TAAAACCATGTCTGGGACATGGCATCGACTTTGATGTGTGAACTAGTG
1 TAAGACCATGTCTAGGACATGGCATCGGC-TTGATATGAG-TCTAGTG
* *
86424732 TAAGACCGTGT-TCGGGACATGGCATC
1 TAAGACCATGTCT-AGGACATGGCATC
86424758 AGTATCTTAC
Statistics
Matches: 246, Mismatches: 45, Indels: 49
0.72 0.13 0.14
Matches are distributed among these distances:
45 52 0.21
46 12 0.05
47 11 0.04
48 62 0.25
49 8 0.03
50 96 0.39
51 3 0.01
52 2 0.01
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (46 bp):
TAAGACCATGTCTAGGACATGGCATCGGCTTGATATGAGTCTAGTG
Found at i:86424555 original size:50 final size:49
Alignment explanation
Indices: 86424437--86424759 Score: 193
Period size: 50 Copynumber: 6.7 Consensus size: 49
86424427 GATATGTGTC
* * * * * *
86424437 AGTGTAAGACCATGTCTAGGACATGGCATCGGCATT-A-AGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCTTGAGATATGAAAG-T
* *
86424485 AGTGTAAGACAATGTTTGGGACATGGCATCAGCCTTGAGATATGAAAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCTTGAGATATGAAAG-T
* * * *
86424535 AGTGTAAAACCATGTCTGGGACATGACATC-GGCTT--GATATG--TGT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCTTGAGATATGAAAGT
* * * * ** ** * * *
86424579 CAATCTAAGACCATGTCTAGGACATGGTATTGGCAC-CAATAGATGATAGT
1 -AGTGTAAGACCATGTCTGGGACATGGCATCAGC-CTTGAGATATGAAAGT
* * * *
86424629 CGGTATAAGACCATGTCTGGGACATGGCATCAGCCTTGATATATGAGAGT
1 -AGTGTAAGACCATGTCTGGGACATGGCATCAGCCTTGAGATATGAAAGT
* * * *
86424679 CAGTGTAAAACCATGTCTGGGACATGGCATC-GACTTTGATG-TGTG-AACT
1 -AGTGTAAGACCATGTCTGGGACATGGCATCAG-CCTTGA-GATATGAAAGT
*
86424728 AGTGTAAGACCGTGT-TCGGGACATGGCATCAG
1 AGTGTAAGACCATGTCT-GGGACATGGCATCAG
86424760 TATCTTACCC
Statistics
Matches: 214, Mismatches: 47, Indels: 27
0.74 0.16 0.09
Matches are distributed among these distances:
44 1 0.00
45 24 0.11
46 1 0.00
47 8 0.04
48 61 0.29
49 10 0.05
50 109 0.51
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (49 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCAGCCTTGAGATATGAAAGT
Found at i:86424695 original size:145 final size:143
Alignment explanation
Indices: 86424402--86424710 Score: 408
Period size: 145 Copynumber: 2.1 Consensus size: 143
86424392 ATTATAAGAT
* * *
86424402 CATGTCTAGGACATGGCA-CTGGCTTGATATGTGTCAGTGTAAGACCATGTCTAGGACATGGCAT
1 CATGTCTGGGACATGGCATC-GGCTTGATATGTGTCAATCTAAGACCATGTCTAGGACATGGCAT
** * *
86424466 CGGCATTAAGACGAGAGCTAGTGTAAGACAATGTTTGGGACATGGCATCAGCCTTGAGATATGAA
65 CGGCACAAAGACGAGAGCTAGTATAAGACAATGTCTGGGACATGGCATCAGCCTTGAGATATGAA
86424531 AGCTAGTGTAAAAC
130 AGCTAGTGTAAAAC
* * *
86424545 CATGTCTGGGACATGACATCGGCTTGATATGTGTCAATCTAAGACCATGTCTAGGACATGGTATT
1 CATGTCTGGGACATGGCATCGGCTTGATATGTGTCAATCTAAGACCATGTCTAGGACATGGCATC
* * * * *
86424610 GGCACCAATAGATGATAG-TCGGTATAAGACCATGTCTGGGACATGGCATCAGCCTTGATATATG
66 GGCA-CAA-AGACGAGAGCT-AGTATAAGACAATGTCTGGGACATGGCATCAGCCTTGAGATATG
*
86424674 AGAG-TCAGTGTAAAAC
128 AAAGCT-AGTGTAAAAC
86424690 CATGTCTGGGACATGGCATCG
1 CATGTCTGGGACATGGCATCG
86424711 ACTTTGATGT
Statistics
Matches: 144, Mismatches: 17, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
143 61 0.42
144 4 0.03
145 79 0.55
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26
Consensus pattern (143 bp):
CATGTCTGGGACATGGCATCGGCTTGATATGTGTCAATCTAAGACCATGTCTAGGACATGGCATC
GGCACAAAGACGAGAGCTAGTATAAGACAATGTCTGGGACATGGCATCAGCCTTGAGATATGAAA
GCTAGTGTAAAAC
Found at i:86427835 original size:40 final size:40
Alignment explanation
Indices: 86427780--86427967 Score: 331
Period size: 40 Copynumber: 4.7 Consensus size: 40
86427770 TTAAAACACA
* * *
86427780 AATGCCTTTGGGACTTAATCCGAATATAATAACCAGCACG
1 AATGCCTTCGGGACTTAACCCGGATATAATAACCAGCACG
* *
86427820 AATGCCTTCGGGACTTAACCCTGATATAATAACCAGCACA
1 AATGCCTTCGGGACTTAACCCGGATATAATAACCAGCACG
86427860 AATGCCTTCGGGACTTAACCCGGATATAATAACCAGCACG
1 AATGCCTTCGGGACTTAACCCGGATATAATAACCAGCACG
86427900 AATGCCTTCGGGACTTAACCCGGATATAATAACCAGCACG
1 AATGCCTTCGGGACTTAACCCGGATATAATAACCAGCACG
86427940 AATGCCTTCGGGACTTAACCCGGATATA
1 AATGCCTTCGGGACTTAACCCGGATATA
86427968 TATATTCCTC
Statistics
Matches: 141, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 141 1.00
ACGTcount: A:0.33, C:0.26, G:0.19, T:0.22
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATATAATAACCAGCACG
Found at i:86435489 original size:40 final size:40
Alignment explanation
Indices: 86435434--86435621 Score: 315
Period size: 40 Copynumber: 4.7 Consensus size: 40
86435424 AAAAAACACA
* * *
86435434 AATGCCTTTGGGACTTAATCCGGATATAATAACC-GAAACG
1 AATGCCTTCGGGACTTAACCCGGATATAATAACCAG-CACG
*
86435474 AATGCCTTCGGGACTTAACCCTGATATAATAACCAGCACG
1 AATGCCTTCGGGACTTAACCCGGATATAATAACCAGCACG
*
86435514 AATGCCTTCGGGACTTAACCCGGATATAATAACCAGCATG
1 AATGCCTTCGGGACTTAACCCGGATATAATAACCAGCACG
86435554 AATGCCTTCGGGACTTAACCCGGATATAATAACCAGCACG
1 AATGCCTTCGGGACTTAACCCGGATATAATAACCAGCACG
86435594 AATGCCTTCGGGACTTAACCCGGATATA
1 AATGCCTTCGGGACTTAACCCGGATATA
86435622 TATATTCCTC
Statistics
Matches: 140, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
40 139 0.99
41 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.20, T:0.23
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATATAATAACCAGCACG
Found at i:86438464 original size:15 final size:15
Alignment explanation
Indices: 86438444--86438475 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
86438434 TTCATGCTTC
86438444 ATTCAGCCAAGGAAG
1 ATTCAGCCAAGGAAG
86438459 ATTCAGCCAAGGAAG
1 ATTCAGCCAAGGAAG
86438474 AT
1 AT
86438476 GATAATGAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.41, C:0.19, G:0.25, T:0.16
Consensus pattern (15 bp):
ATTCAGCCAAGGAAG
Found at i:86440683 original size:44 final size:43
Alignment explanation
Indices: 86440577--86440706 Score: 161
Period size: 44 Copynumber: 3.0 Consensus size: 43
86440567 GAATTTAGAA
* * * * * *
86440577 ATCCGAACTCGTTGAGTTGGTCTGGGTTCGTGATATGTATGAGGC
1 ATCCGAGCTCGTTGAGTTGGTCCGAGTTCAT--TATGGATGCGGC
86440622 ATCCGAGCTCGTTGAGTTGGTCCGAGTTCATTATGGATGCGTGC
1 ATCCGAGCTCGTTGAGTTGGTCCGAGTTCATTATGGATGCG-GC
* *
86440666 ATTCGAGCTCGTTGAGTTGGTCCGAGTTCATAATGGATGCG
1 ATCCGAGCTCGTTGAGTTGGTCCGAGTTCATTATGGATGCG
86440707 ATACATGTAA
Statistics
Matches: 76, Mismatches: 8, Indels: 3
0.87 0.09 0.03
Matches are distributed among these distances:
43 8 0.11
44 41 0.54
45 27 0.36
ACGTcount: A:0.18, C:0.18, G:0.32, T:0.32
Consensus pattern (43 bp):
ATCCGAGCTCGTTGAGTTGGTCCGAGTTCATTATGGATGCGGC
Found at i:86446017 original size:20 final size:20
Alignment explanation
Indices: 86445994--86446035 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
86445984 ATCTAAGTAA
86445994 GACAAATCTCATCAAAGTCT
1 GACAAATCTCATCAAAGTCT
86446014 GACAAATCTCATCAAAGTCT
1 GACAAATCTCATCAAAGTCT
86446034 GA
1 GA
86446036 AGAGATCACA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.40, C:0.24, G:0.12, T:0.24
Consensus pattern (20 bp):
GACAAATCTCATCAAAGTCT
Found at i:86447361 original size:40 final size:40
Alignment explanation
Indices: 86447285--86447368 Score: 98
Period size: 40 Copynumber: 2.1 Consensus size: 40
86447275 TGACATATCA
* * *
86447285 GCTAAATATGGCACTTACTGTGCGGTTCGGTGTAGCTTTG
1 GCTAAATATGGCACTTACTGTGCGATTCGGTATAGCTTCG
* * *
86447325 GCTAAATTTGGCACTTAGTGTGCGATTTGAG-ATAGCTTCG
1 GCTAAATATGGCACTTACTGTGCGATTCG-GTATAGCTTCG
86447365 GCTA
1 GCTA
86447369 TGTACAACAC
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
40 36 0.97
41 1 0.03
ACGTcount: A:0.20, C:0.17, G:0.29, T:0.35
Consensus pattern (40 bp):
GCTAAATATGGCACTTACTGTGCGATTCGGTATAGCTTCG
Found at i:86447435 original size:28 final size:28
Alignment explanation
Indices: 86447404--86447506 Score: 163
Period size: 28 Copynumber: 3.7 Consensus size: 28
86447394 TTAAATATGG
86447404 CACTTAGTGTGCGAAATATTGAGAATGA
1 CACTTAGTGTGCGAAATATTGAGAATGA
*
86447432 CACTTAGTGTG-TAAGATATTGAGAATGA
1 CACTTAGTGTGCGAA-ATATTGAGAATGA
* *
86447460 CACTTAGTGTGCGAGATATTAAGAATGA
1 CACTTAGTGTGCGAAATATTGAGAATGA
86447488 CACTTAGTGTGCGAAATAT
1 CACTTAGTGTGCGAAATAT
86447507 CGAATGATTC
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
27 2 0.03
28 65 0.96
29 1 0.01
ACGTcount: A:0.35, C:0.11, G:0.24, T:0.30
Consensus pattern (28 bp):
CACTTAGTGTGCGAAATATTGAGAATGA
Found at i:86449304 original size:16 final size:16
Alignment explanation
Indices: 86449283--86449315 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
86449273 TAAGAATTGT
86449283 TTTAATTAGACAGATA
1 TTTAATTAGACAGATA
86449299 TTTAATTAGACAGATA
1 TTTAATTAGACAGATA
86449315 T
1 T
86449316 ACTTTCCAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.42, C:0.06, G:0.12, T:0.39
Consensus pattern (16 bp):
TTTAATTAGACAGATA
Found at i:86454761 original size:84 final size:87
Alignment explanation
Indices: 86454653--86454874 Score: 324
Period size: 92 Copynumber: 2.5 Consensus size: 87
86454643 AGTGTGCTCT
86454653 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-T-G-TGTGTAAGACCAT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCATAGATGTGTAAGACCAT
86454715 GGTTAAAAGATACCATGGCAAC
66 GGTTAAAAGATACCATGGCAAC
86454737 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGATGTGTAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC----AT-AGATGTGTAAG
*
86454802 ACCATGGTTGAAAGATACCATGGCAAC
61 ACCATGGTTAAAAGATACCATGGCAAC
* * * **
86454829 GTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
86454875 ATGACTGAAA
Statistics
Matches: 124, Mismatches: 6, Indels: 8
0.90 0.04 0.06
Matches are distributed among these distances:
84 47 0.38
89 1 0.01
91 1 0.01
92 75 0.60
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.23
Consensus pattern (87 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCATAGATGTGTAAGACCAT
GGTTAAAAGATACCATGGCAAC
Found at i:86454770 original size:46 final size:46
Alignment explanation
Indices: 86454702--86454896 Score: 284
Period size: 46 Copynumber: 4.2 Consensus size: 46
86454692 TGGCAACCTG
*
86454702 TGTGTAAGACCATGGTTAAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
*
86454748 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* *
86454794 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* ** * *
86454840 AGAATAAGACCATGGTTGAAAGATACCATGGCAACATGA-CTGAAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG-AAA
*
86454886 TGAGTAAGACC
1 TGTGTAAGACC
86454897 GAAAGACACT
Statistics
Matches: 136, Mismatches: 12, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 2 0.01
46 134 0.99
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (46 bp):
TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
Found at i:86455218 original size:23 final size:25
Alignment explanation
Indices: 86455173--86455219 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
86455163 AATAAATATA
*
86455173 CATAAAATATATGGAAATGATGAAG
1 CATAAAATATATGGAAATAATGAAG
*
86455198 CATAAAATAT-T-GATATAATGAA
1 CATAAAATATATGGAAATAATGAA
86455220 ATGAATGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 9 0.45
24 1 0.05
25 10 0.50
ACGTcount: A:0.53, C:0.04, G:0.15, T:0.28
Consensus pattern (25 bp):
CATAAAATATATGGAAATAATGAAG
Found at i:86457485 original size:48 final size:47
Alignment explanation
Indices: 86457387--86457550 Score: 147
Period size: 48 Copynumber: 3.4 Consensus size: 47
86457377 AAGTGCTCAC
* * * * * **
86457387 ATCATGGCCCGAAGCCAACTCAA-TATATCTCGCACCCAAAGTTCTAAT
1 ATCATGGCCCGAAGCCAAATCAAGTA-A-CTCTCACTCGAAGTGCCGAT
*
86457435 ATCATGGCCCGTAGCCAAATC-AGTGAAGCT-TGCAGC-CGAAGTGCCGAT
1 ATCATGGCCCGAAGCCAAATCAAGT-AA-CTCT-CA-CTCGAAGTGCCGAT
*
86457483 ATCATGGACCGAAGCCAAATCAAAGTAACTCTCACTCGAAGTGCCGAT
1 ATCATGGCCCGAAGCCAAATC-AAGTAACTCTCACTCGAAGTGCCGAT
*
86457531 ATCATGGCTCGAAGCCAAAT
1 ATCATGGCCCGAAGCCAAAT
86457551 TAATGTATCC
Statistics
Matches: 96, Mismatches: 12, Indels: 16
0.77 0.10 0.13
Matches are distributed among these distances:
47 2 0.02
48 86 0.90
49 5 0.05
50 3 0.03
ACGTcount: A:0.32, C:0.28, G:0.20, T:0.20
Consensus pattern (47 bp):
ATCATGGCCCGAAGCCAAATCAAGTAACTCTCACTCGAAGTGCCGAT
Found at i:86468395 original size:46 final size:46
Alignment explanation
Indices: 86468345--86468741 Score: 571
Period size: 46 Copynumber: 8.6 Consensus size: 46
86468335 TGCCATAATG
*
86468345 TCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACTCA-TTTCATGTCATGTTGCCATGGTA
* * *
86468391 TCTTTCAACCATGGTCTTATTCATTTCATGTCACGCTGCCATGGTA
1 TCTTTCAACCATGGTCTTACTCATTTCATGTCATGTTGCCATGGTA
* **
86468437 TCTTTCAACCATGGTCTTATTCATTTCCCGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACTCATTTCATGTCATGTTGCCATGGTA
* **
86468483 TCTTTCAACCATGGTCTTACACATTTCATAACATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACTCATTTCATGTCATGTTGCCATGGTA
* *
86468529 TCTTTCAACCATGGTCTTACACATTTCATGTCATGTTGTCATGGTA
1 TCTTTCAACCATGGTCTTACTCATTTCATGTCATGTTGCCATGGTA
* *
86468575 TCTTTCAACCATGGTCTTATTCAATTCATGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACTCATTTCATGTCATGTTGCCATGGTA
* * *
86468621 TCTTTCAACCATGGTCTTATTCATTTCATGTCACGTTGTCATGGTA
1 TCTTTCAACCATGGTCTTACTCATTTCATGTCATGTTGCCATGGTA
** * *
86468667 TCTTTCAACCATGGTCTTACAAATTTCATATAATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACTCATTTCATGTCATGTTGCCATGGTA
* *
86468713 TCTTTCAACCATGGTCTTATTTATTTCAT
1 TCTTTCAACCATGGTCTTACTCATTTCAT
86468742 TTCAAAGAGC
Statistics
Matches: 316, Mismatches: 34, Indels: 2
0.90 0.10 0.01
Matches are distributed among these distances:
45 4 0.01
46 312 0.99
ACGTcount: A:0.21, C:0.23, G:0.14, T:0.42
Consensus pattern (46 bp):
TCTTTCAACCATGGTCTTACTCATTTCATGTCATGTTGCCATGGTA
Found at i:86470438 original size:68 final size:68
Alignment explanation
Indices: 86470366--86470497 Score: 264
Period size: 68 Copynumber: 1.9 Consensus size: 68
86470356 TGCTCTCTGT
86470366 TTCGTTTGCTTTTTCTTCATTTCTATTCTTTTTTCTTTCTTTATTTCTTTATATATATATATACC
1 TTCGTTTGCTTTTTCTTCATTTCTATTCTTTTTTCTTTCTTTATTTCTTTATATATATATATACC
86470431 AGA
66 AGA
86470434 TTCGTTTGCTTTTTCTTCATTTCTATTCTTTTTTCTTTCTTTATTTCTTTATATATATATATAC
1 TTCGTTTGCTTTTTCTTCATTTCTATTCTTTTTTCTTTCTTTATTTCTTTATATATATATATAC
86470498 ACATGTATTT
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
68 64 1.00
ACGTcount: A:0.17, C:0.16, G:0.04, T:0.64
Consensus pattern (68 bp):
TTCGTTTGCTTTTTCTTCATTTCTATTCTTTTTTCTTTCTTTATTTCTTTATATATATATATACC
AGA
Found at i:86481098 original size:79 final size:81
Alignment explanation
Indices: 86480962--86481146 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
86480952 TTGAATGATG
*
86480962 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
86481026 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
86481041 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
86481103 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
86481121 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
86481147 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:86481160 original size:40 final size:40
Alignment explanation
Indices: 86480963--86481146 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
86480953 TGAATGATGT
* * * *
86480963 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
86481003 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
86481043 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
86481081 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
86481122 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
86481147 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:86481168 original size:79 final size:79
Alignment explanation
Indices: 86481015--86481179 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
86481005 GGACTAAGAT
* **
86481015 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
86481080 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
86481094 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
86481157 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
86481173 CCGAAGG
1 CCGAAGG
86481180 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:86484470 original size:24 final size:24
Alignment explanation
Indices: 86484438--86484483 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
86484428 GACATTGTGC
86484438 TAAGTGAAATAAGACCATGGCATT
1 TAAGTGAAATAAGACCATGGCATT
*
86484462 TAAGTGAAATAAGTCCATGGCA
1 TAAGTGAAATAAGACCATGGCA
86484484 ATGTGCTAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.41, C:0.13, G:0.22, T:0.24
Consensus pattern (24 bp):
TAAGTGAAATAAGACCATGGCATT
Found at i:86484516 original size:28 final size:28
Alignment explanation
Indices: 86484433--86484520 Score: 76
Period size: 28 Copynumber: 3.3 Consensus size: 28
86484423 GATATGACAT
* * *
86484433 TGTGCTAAGTGAAATAAGACCATGGC-A
1 TGTGCTAATTGAAATAAGTCCATAGCAA
* *
86484460 T-T--TAAGTGAAATAAGTCCATGGCAA
1 TGTGCTAATTGAAATAAGTCCATAGCAA
** *
86484485 TGTGCTAATTGAAATAAGTTTATAGCAT
1 TGTGCTAATTGAAATAAGTCCATAGCAA
86484513 TGTGCTAA
1 TGTGCTAA
86484521 GTGAGAAATT
Statistics
Matches: 51, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
24 20 0.39
25 2 0.04
26 2 0.04
27 1 0.02
28 26 0.51
ACGTcount: A:0.36, C:0.11, G:0.22, T:0.31
Consensus pattern (28 bp):
TGTGCTAATTGAAATAAGTCCATAGCAA
Found at i:86484603 original size:51 final size:51
Alignment explanation
Indices: 86484548--86484645 Score: 162
Period size: 51 Copynumber: 1.9 Consensus size: 51
86484538 TGAACCTTAG
*
86484548 GAATAAAATAGCTTTGGAC-ACAAGTGTGGTACTATGTGAAGGCCACTTTGT
1 GAATAAAATAGCTTT-GACTACAAGGGTGGTACTATGTGAAGGCCACTTTGT
*
86484599 GAATAAAATAGCTTTGACTACAAGGGTGGTACTATGTGCAGGCCACT
1 GAATAAAATAGCTTTGACTACAAGGGTGGTACTATGTGAAGGCCACT
86484646 GTTTATCCGT
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
50 3 0.07
51 41 0.93
ACGTcount: A:0.32, C:0.15, G:0.26, T:0.28
Consensus pattern (51 bp):
GAATAAAATAGCTTTGACTACAAGGGTGGTACTATGTGAAGGCCACTTTGT
Found at i:86503842 original size:24 final size:24
Alignment explanation
Indices: 86503767--86503842 Score: 66
Period size: 24 Copynumber: 3.2 Consensus size: 24
86503757 TAAGTGACCT
86503767 ATTTAATTTAATAATTAGCCACCC
1 ATTTAATTTAATAATTAGCCACCC
* * ** ** *
86503791 AGTAAATTT--TTTTTAAGTGACCT
1 ATTTAATTTAATAATT-AGCCACCC
86503814 ATTTAATTTAATAATTAGCCACCC
1 ATTTAATTTAATAATTAGCCACCC
86503838 ATTTA
1 ATTTA
86503843 GTATCGTTTC
Statistics
Matches: 35, Mismatches: 14, Indels: 6
0.64 0.25 0.11
Matches are distributed among these distances:
22 3 0.09
23 12 0.34
24 17 0.49
25 3 0.09
ACGTcount: A:0.36, C:0.16, G:0.07, T:0.42
Consensus pattern (24 bp):
ATTTAATTTAATAATTAGCCACCC
Found at i:86504604 original size:24 final size:24
Alignment explanation
Indices: 86504575--86504684 Score: 105
Period size: 24 Copynumber: 4.6 Consensus size: 24
86504565 AGGAAATTCA
*
86504575 CACACATAGTGCCATGCTAACCCG
1 CACACATAGTGCCATGCAAACCCG
* * * * *
86504599 CACACATAATGCCTTGCTAATCCA
1 CACACATAGTGCCATGCAAACCCG
* *
86504623 CACACGTAGTGCCATTCAAATCCC-
1 CACACATAGTGCCATGCAAA-CCCG
* * *
86504647 TACACATAGTGCCATTCAAATCCG
1 CACACATAGTGCCATGCAAACCCG
86504671 CACACATAGTGCCA
1 CACACATAGTGCCA
86504685 ATGTCATTTC
Statistics
Matches: 70, Mismatches: 14, Indels: 4
0.80 0.16 0.05
Matches are distributed among these distances:
23 2 0.03
24 66 0.94
25 2 0.03
ACGTcount: A:0.32, C:0.35, G:0.13, T:0.21
Consensus pattern (24 bp):
CACACATAGTGCCATGCAAACCCG
Found at i:86504652 original size:48 final size:48
Alignment explanation
Indices: 86504568--86504684 Score: 130
Period size: 48 Copynumber: 2.4 Consensus size: 48
86504558 TCGGTCAAGG
* *
86504568 AAATTCACACACATAGTGCCATGCTAACCCGCACACATAATGCC-TTGC
1 AAATCCACACACATAGTGCCATGCAAACCCGCACACATAATGCCATT-C
* * * * *
86504616 TAATCCACACACGTAGTGCCATTCAAATCCC-TACACATAGTGCCATTC
1 AAATCCACACACATAGTGCCATGCAAA-CCCGCACACATAATGCCATTC
*
86504664 AAATCCGCACACATAGTGCCA
1 AAATCCACACACATAGTGCCA
86504685 ATGTCATTTC
Statistics
Matches: 57, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
48 52 0.91
49 5 0.09
ACGTcount: A:0.33, C:0.33, G:0.12, T:0.21
Consensus pattern (48 bp):
AAATCCACACACATAGTGCCATGCAAACCCGCACACATAATGCCATTC
Found at i:86505078 original size:17 final size:17
Alignment explanation
Indices: 86505056--86505089 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
86505046 CCCCACTTAA
*
86505056 TATATTATAACTTATTT
1 TATATTATAACATATTT
86505073 TATATTATAACATATTT
1 TATATTATAACATATTT
86505090 CAAATACATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (17 bp):
TATATTATAACATATTT
Found at i:86507427 original size:93 final size:93
Alignment explanation
Indices: 86507258--86507427 Score: 232
Period size: 93 Copynumber: 1.8 Consensus size: 93
86507248 GGATGGTTGA
* * * * *
86507258 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCATGGAGT
**
86507323 TGAGTTTGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* * * *
86507351 GCATCCGAACTCGTTGAGTTGATTCTGAGTTCACCTATGGGTGCGAACGCCCGAGCTCATGGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCATGGAGT
*
86507416 TGTGTCCGAGTT
66 TGAGTCCGAGTT
86507428 TGCTTATGGG
Statistics
Matches: 65, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
93 65 1.00
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCATGGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:86509693 original size:24 final size:24
Alignment explanation
Indices: 86509639--86509693 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 24
86509629 ATTTCATTTC
*
86509639 TACCATGTATTATGTGTCTTAATGT
1 TACCATGTATTATATG-CTTAATGT
*
86509664 T-TCATGTATTATATG-TTAATTGT
1 TACCATGTATTATATGCTTAA-TGT
86509687 TACCATG
1 TACCATG
86509694 AAAACATGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
22 4 0.16
23 4 0.16
24 16 0.64
25 1 0.04
ACGTcount: A:0.25, C:0.11, G:0.15, T:0.49
Consensus pattern (24 bp):
TACCATGTATTATATGCTTAATGT
Found at i:86511479 original size:15 final size:15
Alignment explanation
Indices: 86511455--86511486 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
86511445 TGAGTAGCCA
86511455 AATGTATTGGCTTAT
1 AATGTATTGGCTTAT
*
86511470 AATGTTTTGGCTTAT
1 AATGTATTGGCTTAT
86511485 AA
1 AA
86511487 GCCTAATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.28, C:0.06, G:0.19, T:0.47
Consensus pattern (15 bp):
AATGTATTGGCTTAT
Found at i:86513366 original size:84 final size:84
Alignment explanation
Indices: 86513224--86513455 Score: 315
Period size: 84 Copynumber: 2.8 Consensus size: 84
86513214 CAATGCCAAC
* * * *
86513224 GTCCCAAACGTGGTCTTACATGTAATCATATATCGATGCC-ACTGTCCCAGATAG-GGTCTTACA
1 GTCCCAGACATGGTCTTACATGTAATCACATATCGATGCCAAC-GTCCCAGA-CGTGGTCTTACA
*
86513287 CGAATCAAATATGATACCGAT
64 CGAATCAAATACGATACCGAT
* *
86513308 GTCCCAGACATGGTCTTACATGTAATCACATATTGATGCCAACATCCCAGACGTGGTCTTACACG
1 GTCCCAGACATGGTCTTACATGTAATCACATATCGATGCCAACGTCCCAGACGTGGTCTTACACG
*
86513373 AATCAAATACGATGCCGAT
66 AATCAAATACGATACCGAT
* * ** *
86513392 GTCCAAGACATGGTCATACACATAATCACATATCGATGCCAACGTCCCATACGTGGTCTTACAC
1 GTCCCAGACATGGTCTTACATGTAATCACATATCGATGCCAACGTCCCAGACGTGGTCTTACAC
86513456 AAATACACAT
Statistics
Matches: 131, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
83 1 0.01
84 128 0.98
85 2 0.02
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.25
Consensus pattern (84 bp):
GTCCCAGACATGGTCTTACATGTAATCACATATCGATGCCAACGTCCCAGACGTGGTCTTACACG
AATCAAATACGATACCGAT
Found at i:86513456 original size:43 final size:42
Alignment explanation
Indices: 86513216--86513470 Score: 230
Period size: 43 Copynumber: 6.0 Consensus size: 42
86513206 ATATCATACA
* * *
86513216 ATGCCAACGTCCCAAACGTGGTCTTACATGTAATCATATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACA-CTAATCACATATCG
* * *
86513259 ATGCC-ACTGTCCCAGATAG-GGTCTTACACGAATCAAATAT-G
1 ATGCCAAC-GTCCCAGA-CGTGGTCTTACACTAATCACATATCG
* * * * * *
86513300 ATACCGATGTCCCAGACATGGTCTTACATGTAATCACATATTG
1 ATGCCAACGTCCCAGACGTGGTCTTACA-CTAATCACATATCG
* * *
86513343 ATGCCAACATCCCAGACGTGGTCTTACACGAATCAAATA-CG
1 ATGCCAACGTCCCAGACGTGGTCTTACACTAATCACATATCG
* * * * *
86513384 ATGCCGATGTCCAAGACATGGTCATACACATAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACAC-TAATCACATATCG
* *
86513427 ATGCCAACGTCCCATACGTGGTCTTACACAAATACACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACTAAT-CACATATCG
86513470 A
1 A
86513471 AAATCGTATG
Statistics
Matches: 167, Mismatches: 36, Indels: 18
0.76 0.16 0.08
Matches are distributed among these distances:
41 46 0.28
42 40 0.24
43 80 0.48
44 1 0.01
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.25
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACTAATCACATATCG
Found at i:86529695 original size:46 final size:46
Alignment explanation
Indices: 86529530--86529705 Score: 171
Period size: 46 Copynumber: 3.8 Consensus size: 46
86529520 TGTAACCCGC
* * *
86529530 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * * * * *
86529576 CCATGAGTGACCTTGGACTCAACTCAACGAGTTCCGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTT-CG--GAC-A-TTCGCAT
* *
86529626 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTTGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
86529669 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
86529706 TGCCCAAATA
Statistics
Matches: 103, Mismatches: 18, Indels: 18
0.74 0.13 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 3 0.03
45 2 0.02
46 57 0.55
47 25 0.24
48 2 0.02
49 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:86529696 original size:93 final size:93
Alignment explanation
Indices: 86529537--86529709 Score: 274
Period size: 93 Copynumber: 1.9 Consensus size: 93
86529527 CGCCCATAAG
* * * * *
86529537 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATGAGTGACCTTGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
86529602 ACGAGTTCCGATGCCTAGTTACATCTCA
66 ACGAGTTCCGATGCCTAGTTACATCTCA
* *
86529630 CGAACTCGGACTCAACTCAACGAGTTTGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
86529695 ACGAGTTCGGATGCC
66 ACGAGTTCCGATGCC
86529710 CAAATATCCT
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCCGATGCCTAGTTACATCTCA
Found at i:86532677 original size:8 final size:8
Alignment explanation
Indices: 86532664--86532698 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
86532654 ATGAATCGTC
86532664 AAAAGCCG
1 AAAAGCCG
*
86532672 AAAAGCTG
1 AAAAGCCG
*
86532680 AAATGCCG
1 AAAAGCCG
86532688 AAAAGCCG
1 AAAAGCCG
86532696 AAA
1 AAA
86532699 GTTGGGCTAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.51, C:0.20, G:0.23, T:0.06
Consensus pattern (8 bp):
AAAAGCCG
Found at i:86532954 original size:29 final size:28
Alignment explanation
Indices: 86532922--86533028 Score: 83
Period size: 29 Copynumber: 3.8 Consensus size: 28
86532912 ATAATATGAT
*
86532922 TTGGGCCTAATGGGTCATATGAATGAGAA
1 TTGGGCCTAATGGGCCATATGAAT-AGAA
* ** *
86532951 TTGGGCCTAGTGGAACATAAGAATATGAA
1 TTGGGCCTAATGGGCCATATGAATA-GAA
* *
86532980 CTGGGCC-AGATGGGCCATTTGAATA-AGA
1 TTGGGCCTA-ATGGGCCATATGAATAGA-A
* *
86533008 TTGGGCTTAGTGGGCCATATG
1 TTGGGCCTAATGGGCCATATG
86533029 CATATATGTA
Statistics
Matches: 60, Mismatches: 14, Indels: 9
0.72 0.17 0.11
Matches are distributed among these distances:
27 1 0.02
28 18 0.30
29 41 0.68
ACGTcount: A:0.29, C:0.13, G:0.32, T:0.26
Consensus pattern (28 bp):
TTGGGCCTAATGGGCCATATGAATAGAA
Found at i:86537323 original size:30 final size:30
Alignment explanation
Indices: 86537278--86537346 Score: 102
Period size: 30 Copynumber: 2.3 Consensus size: 30
86537268 CTCTTTGCTC
* *
86537278 TTTTCTTTCGGTTTAATCACTTGTTTTACT
1 TTTTCTCTCGATTTAATCACTTGTTTTACT
*
86537308 TTTTCTCTCGATTTAATCACTTGTTTTCCT
1 TTTTCTCTCGATTTAATCACTTGTTTTACT
*
86537338 TTTTTTCTC
1 TTTTCTCTC
86537347 ACTTTTTTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.12, C:0.20, G:0.07, T:0.61
Consensus pattern (30 bp):
TTTTCTCTCGATTTAATCACTTGTTTTACT
Found at i:86537355 original size:13 final size:13
Alignment explanation
Indices: 86537337--86537368 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
86537327 CTTGTTTTCC
86537337 TTTTTTTCTCACT
1 TTTTTTTCTCACT
86537350 TTTTTTTCTCACT
1 TTTTTTTCTCACT
86537363 TTTTTT
1 TTTTTT
86537369 CATTCTTCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.06, C:0.19, G:0.00, T:0.75
Consensus pattern (13 bp):
TTTTTTTCTCACT
Found at i:86546940 original size:30 final size:30
Alignment explanation
Indices: 86546904--86546963 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
86546894 AATTAAAACA
*
86546904 AACCAATGTTTTCTTGAAATAGTTTAGATT
1 AACCAATGTTTTCTTGAAATAATTTAGATT
86546934 AACCAATGTTTTCTTGAAATAATTTAGATT
1 AACCAATGTTTTCTTGAAATAATTTAGATT
86546964 TTAATCATGA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.35, C:0.10, G:0.12, T:0.43
Consensus pattern (30 bp):
AACCAATGTTTTCTTGAAATAATTTAGATT
Found at i:86549872 original size:17 final size:17
Alignment explanation
Indices: 86549836--86549883 Score: 71
Period size: 18 Copynumber: 2.8 Consensus size: 17
86549826 AATCAAAATT
86549836 TATTTTATAATAAGATAA
1 TATTTTATAATAA-ATAA
86549854 TATTTTATAATAAATAA
1 TATTTTATAATAAATAA
*
86549871 TATCTTAT-ATAAA
1 TATTTTATAATAAA
86549884 CTTAATAATA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
16 5 0.17
17 11 0.38
18 13 0.45
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (17 bp):
TATTTTATAATAAATAA
Found at i:86550076 original size:8 final size:8
Alignment explanation
Indices: 86550063--86550088 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
86550053 ATATTTATTA
86550063 TTAAAAAT
1 TTAAAAAT
86550071 TTAAAAAT
1 TTAAAAAT
86550079 TTAAAAAT
1 TTAAAAAT
86550087 TT
1 TT
86550089 TAATATTGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (8 bp):
TTAAAAAT
Found at i:86555430 original size:40 final size:41
Alignment explanation
Indices: 86555386--86555463 Score: 104
Period size: 40 Copynumber: 1.9 Consensus size: 41
86555376 AAACATTTAT
*
86555386 TGTTAAAATTATATTATTAAATATAAATA-TTAAATATGAA
1 TGTTAAAATTATAATATTAAATATAAATATTTAAATATGAA
* ** *
86555426 TGTTAACATTATAATATTTTATATTAATATTTAAATAT
1 TGTTAAAATTATAATATTAAATATAAATATTTAAATAT
86555464 TTAAAAAAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
40 24 0.75
41 8 0.25
ACGTcount: A:0.47, C:0.01, G:0.04, T:0.47
Consensus pattern (41 bp):
TGTTAAAATTATAATATTAAATATAAATATTTAAATATGAA
Found at i:86556384 original size:39 final size:39
Alignment explanation
Indices: 86556330--86556408 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
86556320 ACATGATTAT
86556330 AATTTTGACCCATTGCGTAAAGCGTAAGTGCAATACATA
1 AATTTTGACCCATTGCGTAAAGCGTAAGTGCAATACATA
86556369 AATTTTGACCCATTGCGTAAAGCGTAAGTGCAATACATA
1 AATTTTGACCCATTGCGTAAAGCGTAAGTGCAATACATA
86556408 A
1 A
86556409 CTCAACATCG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.28
Consensus pattern (39 bp):
AATTTTGACCCATTGCGTAAAGCGTAAGTGCAATACATA
Found at i:86561155 original size:10 final size:10
Alignment explanation
Indices: 86561127--86561161 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
86561117 TTTTTAGTGG
86561127 AAAATTTTCT
1 AAAATTTTCT
*
86561137 -AAGTTTTCT
1 AAAATTTTCT
86561146 AAAATTTTCT
1 AAAATTTTCT
86561156 AAAATT
1 AAAATT
86561162 GTCGGTTTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
9 8 0.36
10 14 0.64
ACGTcount: A:0.40, C:0.09, G:0.03, T:0.49
Consensus pattern (10 bp):
AAAATTTTCT
Found at i:86566181 original size:27 final size:27
Alignment explanation
Indices: 86566150--86566446 Score: 380
Period size: 27 Copynumber: 11.0 Consensus size: 27
86566140 CAAAATGATT
*
86566150 GAAATACCCTTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
86566177 AAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
86566204 AAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* * * *
86566231 AAAATACCCTTGTAGGATAGAATTATC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
86566258 GAAATACCCCTGTAGGCTAGAATTATC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
86566285 GAAATACCCCTGTAGGCTA-AAGTTACC
1 GAAATACCCCTGTAGGGTAGAA-TTACC
*
86566312 GAAATACCCCTGTAGGGTAGAATTATC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
86566339 GAAATACCCCTGTAGGGTAAAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
*
86566366 AAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
86566393 GAAATACCCCTATAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * * * *
86566420 GAGATACTCTTGTGGGGTAAAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
86566447 ATTTTGCCCC
Statistics
Matches: 241, Mismatches: 27, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
26 2 0.01
27 237 0.98
28 2 0.01
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.26
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACC
Found at i:86566875 original size:22 final size:22
Alignment explanation
Indices: 86566834--86566898 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
86566824 GCCAATTATT
* * *
86566834 CTGATTATGGCTTTGCGCCAAC
1 CTGATTATGACTGTGTGCCAAC
86566856 CT-ATATATGACTGTGTGCCAAC
1 CTGAT-TATGACTGTGTGCCAAC
*
86566878 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGACTGTGTGCCAA
86566899 ACGTATTTGC
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
21 2 0.05
22 33 0.89
23 2 0.05
ACGTcount: A:0.22, C:0.23, G:0.23, T:0.32
Consensus pattern (22 bp):
CTGATTATGACTGTGTGCCAAC
Found at i:86567087 original size:27 final size:27
Alignment explanation
Indices: 86567057--86567154 Score: 126
Period size: 27 Copynumber: 3.6 Consensus size: 27
86567047 ATTCTGTTAA
* *
86567057 GTGGCTTTGCCAC-ATTATCTGTTTCTG
1 GTGGCTATGCCACAAATATCTG-TTCTG
*
86567084 GTGGCTATGCCACAAATATCTGTTCTA
1 GTGGCTATGCCACAAATATCTGTTCTG
86567111 GTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTATGCCACAAATATCTGTTCTG
* * *
86567138 GTAGCCATGCTACAAAT
1 GTGGCTATGCCACAAAT
86567155 TCTATGGTGT
Statistics
Matches: 63, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
27 56 0.89
28 7 0.11
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.35
Consensus pattern (27 bp):
GTGGCTATGCCACAAATATCTGTTCTG
Found at i:86567265 original size:6 final size:6
Alignment explanation
Indices: 86567256--86567392 Score: 86
Period size: 6 Copynumber: 22.3 Consensus size: 6
86567246 TTGCATTCAC
* * *
86567256 ATTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG -TCACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
* * * *
86567306 ATTCTG ATTCTA ATTCTG ATTCTA ATTTTG ATTCTG ATTCTG -TCACTTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT-TC-TG
* *
86567355 ATT-TCG ATTCTG ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCT-G ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
86567393 AATATTTATT
Statistics
Matches: 100, Mismatches: 18, Indels: 26
0.69 0.12 0.18
Matches are distributed among these distances:
5 6 0.06
6 82 0.82
7 9 0.09
8 3 0.03
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:86567287 original size:25 final size:25
Alignment explanation
Indices: 86567256--86567371 Score: 121
Period size: 25 Copynumber: 4.7 Consensus size: 25
86567246 TTGCATTCAC
* *
86567256 ATTCTGATTCTGATTCTGTTACCTG
1 ATTCTGATTCTGATTCTGTCACCTA
*
86567281 ATACTGATTCTGATTCTGTCACCTA
1 ATTCTGATTCTGATTCTGTCACCTA
* *
86567306 ATTCTGATTCTAATTCTG--ATTCTA
1 ATTCTGATTCTGATTCTGTCA-CCTA
* * *
86567330 ATTTTGATTCTGATTCTGTCACTTG
1 ATTCTGATTCTGATTCTGTCACCTA
86567355 ATT-TCGATTCTGATTCT
1 ATTCT-GATTCTGATTCT
86567372 CATTTTGATT
Statistics
Matches: 76, Mismatches: 11, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
23 1 0.01
24 20 0.26
25 54 0.71
26 1 0.01
ACGTcount: A:0.20, C:0.19, G:0.13, T:0.48
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTCACCTA
Found at i:86571390 original size:40 final size:40
Alignment explanation
Indices: 86571323--86571499 Score: 207
Period size: 40 Copynumber: 4.5 Consensus size: 40
86571313 ACTCAAGTAT
*
86571323 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
86571362 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
86571402 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
*** **
86571442 CTTCGGGAAATAGCCCGGATATAGCAACTCGCATGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
86571482 TTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
86571500 TTATCATCCG
Statistics
Matches: 118, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.01
39 13 0.11
40 102 0.86
41 2 0.02
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:86587557 original size:46 final size:46
Alignment explanation
Indices: 86587497--86587816 Score: 534
Period size: 46 Copynumber: 7.0 Consensus size: 46
86587487 TTTGACATGA
* * * * * *
86587497 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
*
86587543 TGCCATGGTATCTTTCAACCATGCTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
86587589 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
86587635 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
86587681 TGCCATGGTGTCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
86587727 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
86587773 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATTTCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
86587817 AGAGCACACT
Statistics
Matches: 261, Mismatches: 12, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
45 4 0.02
46 257 0.98
ACGTcount: A:0.23, C:0.24, G:0.15, T:0.38
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:86590255 original size:30 final size:30
Alignment explanation
Indices: 86590188--86590255 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
86590178 CACCCTTAAA
* * *
86590188 ATATTTGCACTATTAGTCCTTCAACTTTTC
1 ATATTTACACTATTAATCCTTCAAATTTTC
*
86590218 ATATTTACACT-TTAATCCTTCAAATTTTG
1 ATATTTACACTATTAATCCTTCAAATTTTC
86590247 AGTATTTAC
1 A-TATTTAC
86590256 TCTTGGGCCA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.28, C:0.19, G:0.06, T:0.47
Consensus pattern (30 bp):
ATATTTACACTATTAATCCTTCAAATTTTC
Found at i:86594478 original size:56 final size:56
Alignment explanation
Indices: 86594418--86594605 Score: 324
Period size: 56 Copynumber: 3.4 Consensus size: 56
86594408 TCCCAGATAG
86594418 GGTCTTACTCGCACACATATAATGGAATCACATATCGATGCCAACGTATTAAACGT
1 GGTCTTACTCGCACACATATAATGGAATCACATATCGATGCCAACGTATTAAACGT
* * * *
86594474 GGTCTTACTCGCACATATATAACGGAATCACATATCGATGCCAACGTACTAAATGT
1 GGTCTTACTCGCACACATATAATGGAATCACATATCGATGCCAACGTATTAAACGT
86594530 GGTCTTACTCGCACACATATAATGGAATCACATATCGATGCCAACGTATTAAACGT
1 GGTCTTACTCGCACACATATAATGGAATCACATATCGATGCCAACGTATTAAACGT
*
86594586 GGTCTTACTC-AACACATATA
1 GGTCTTACTCGCACACATATA
86594606 TCCATGCCAT
Statistics
Matches: 123, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
55 9 0.07
56 114 0.93
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.27
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATAATGGAATCACATATCGATGCCAACGTATTAAACGT
Found at i:86625908 original size:20 final size:20
Alignment explanation
Indices: 86625883--86625923 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
86625873 CCTTGTAGGC
86625883 TTCCAAACCACACGGGCGTG
1 TTCCAAACCACACGGGCGTG
86625903 TTCCAAACCACACGGGCGTG
1 TTCCAAACCACACGGGCGTG
86625923 T
1 T
86625924 GACCCTTCAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.24, C:0.34, G:0.24, T:0.17
Consensus pattern (20 bp):
TTCCAAACCACACGGGCGTG
Found at i:86626002 original size:140 final size:140
Alignment explanation
Indices: 86625750--86626023 Score: 530
Period size: 140 Copynumber: 2.0 Consensus size: 140
86625740 CACGGCCTAC
*
86625750 CCACACGGGTGTGTTCCAAACCACACGGGCGTGTGACCCTTCATCATAAATTTTTTTCTAAGTTT
1 CCACACGGGCGTGTTCCAAACCACACGGGCGTGTGACCCTTCATCATAAATTTTTTTCTAAGTTT
*
86625815 GTAAAATTTTCCTAAGTGCTCGATTTAGTCCCAAATCACTTCTATAGCATGTTTTAGGCCTTGTA
66 GTAAAATTTTCCTAAGTGCTCGATTTAGTCCCAAATCACTTCTATAGCATGTTTTAGACCTTGTA
86625880 GGCTTCCAAA
131 GGCTTCCAAA
86625890 CCACACGGGCGTGTTCCAAACCACACGGGCGTGTGACCCTTCATCATAAATTTTTTTCTAAGTTT
1 CCACACGGGCGTGTTCCAAACCACACGGGCGTGTGACCCTTCATCATAAATTTTTTTCTAAGTTT
86625955 GTAAAATTTTCCTAAGTGCTCGATTTAGTCCCAAATCACTTCTATAGCATGTTTTAGACCTTGTA
66 GTAAAATTTTCCTAAGTGCTCGATTTAGTCCCAAATCACTTCTATAGCATGTTTTAGACCTTGTA
86626020 GGCT
131 GGCT
86626024 CGTATAAGGG
Statistics
Matches: 132, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
140 132 1.00
ACGTcount: A:0.25, C:0.24, G:0.17, T:0.34
Consensus pattern (140 bp):
CCACACGGGCGTGTTCCAAACCACACGGGCGTGTGACCCTTCATCATAAATTTTTTTCTAAGTTT
GTAAAATTTTCCTAAGTGCTCGATTTAGTCCCAAATCACTTCTATAGCATGTTTTAGACCTTGTA
GGCTTCCAAA
Found at i:86628563 original size:25 final size:25
Alignment explanation
Indices: 86628529--86628581 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
86628519 TGCCACTTGA
86628529 GGTATGTTGATATCGTCAATTTTTT
1 GGTATGTTGATATCGTCAATTTTTT
86628554 GGTATGTTGATATCGTCAATTTTTT
1 GGTATGTTGATATCGTCAATTTTTT
86628579 GGT
1 GGT
86628582 TAGTGGATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.19, C:0.08, G:0.23, T:0.51
Consensus pattern (25 bp):
GGTATGTTGATATCGTCAATTTTTT
Found at i:86629850 original size:13 final size:13
Alignment explanation
Indices: 86629832--86629856 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
86629822 TTACTTTTCT
86629832 TTTAATTTCTTTG
1 TTTAATTTCTTTG
86629845 TTTAATTTCTTT
1 TTTAATTTCTTT
86629857 ATTCAGTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.08, G:0.04, T:0.72
Consensus pattern (13 bp):
TTTAATTTCTTTG
Found at i:86633753 original size:30 final size:30
Alignment explanation
Indices: 86633677--86633753 Score: 109
Period size: 30 Copynumber: 2.6 Consensus size: 30
86633667 GGTTGACACA
* *
86633677 CCCTTTTCATAATTCGACAACCGAAGTTAT
1 CCCTTTTCATAATTTGACAACCGAAGCTAT
* * *
86633707 CCCATTTCATAGTTTGACAACTGAAGCTAT
1 CCCTTTTCATAATTTGACAACCGAAGCTAT
86633737 CCCTTTTCATAATTTGA
1 CCCTTTTCATAATTTGA
86633754 TGGTCCTCAC
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 40 1.00
ACGTcount: A:0.29, C:0.25, G:0.10, T:0.36
Consensus pattern (30 bp):
CCCTTTTCATAATTTGACAACCGAAGCTAT
Found at i:86633769 original size:30 final size:30
Alignment explanation
Indices: 86633735--86633873 Score: 129
Period size: 30 Copynumber: 4.7 Consensus size: 30
86633725 AACTGAAGCT
*
86633735 ATCCCTTTTCATAATTTGATGGTCCTCACC
1 ATCCCTTTTCATAATTCGATGGTCCTCACC
** * *
86633765 ATCCCTTTTCATTGTTCGATGTTCGTCACC
1 ATCCCTTTTCATAATTCGATGGTCCTCACC
* * ** **
86633795 ATCCCTTTTCATAATTTGATAG-CCAAAGTT
1 ATCCCTTTTCATAATTCGATGGTCCTCA-CC
** *
86633825 ATCCCTTTTCATTGTTCGATGGTCGTCACC
1 ATCCCTTTTCATAATTCGATGGTCCTCACC
86633855 ATCCCTTTTCATAA-TCGAT
1 ATCCCTTTTCATAATTCGAT
86633874 AGCCAAGGCT
Statistics
Matches: 81, Mismatches: 26, Indels: 5
0.72 0.23 0.04
Matches are distributed among these distances:
29 7 0.09
30 72 0.89
31 2 0.02
ACGTcount: A:0.20, C:0.27, G:0.12, T:0.41
Consensus pattern (30 bp):
ATCCCTTTTCATAATTCGATGGTCCTCACC
Found at i:86633799 original size:60 final size:60
Alignment explanation
Indices: 86633735--86633893 Score: 214
Period size: 60 Copynumber: 2.7 Consensus size: 60
86633725 AACTGAAGCT
* ** *
86633735 ATCCCTTTTCATAATTTGATGGTCCTCA-CCATCCCTTTTCATTGTTCGATGTTCGTCACC
1 ATCCCTTTTCATAATTTGATAG-CCAAAGCCATCCCTTTTCATTGTTCGATGGTCGTCACC
**
86633795 ATCCCTTTTCATAATTTGATAGCCAAAGTTATCCCTTTTCATTGTTCGATGGTCGTCACC
1 ATCCCTTTTCATAATTTGATAGCCAAAGCCATCCCTTTTCATTGTTCGATGGTCGTCACC
* * *
86633855 ATCCCTTTTCATAA-TCGATAGCCAAGGCTATCCCTTTTC
1 ATCCCTTTTCATAATTTGATAGCCAAAGCCATCCCTTTTC
86633894 GTATTCGATA
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
59 25 0.28
60 64 0.72
ACGTcount: A:0.20, C:0.28, G:0.12, T:0.40
Consensus pattern (60 bp):
ATCCCTTTTCATAATTTGATAGCCAAAGCCATCCCTTTTCATTGTTCGATGGTCGTCACC
Found at i:86633887 original size:29 final size:29
Alignment explanation
Indices: 86633795--86633924 Score: 111
Period size: 29 Copynumber: 4.4 Consensus size: 29
86633785 GTTCGTCACC
* * *
86633795 ATCCCTTTTCATAATTTGATAGCCAAAGTT
1 ATCCCTTTTCATAA-TCGATAGCCGAAGCT
** * * * *
86633825 ATCCCTTTTCATTGTTCGATGGTCGTCA-CC
1 ATCCCTTTTCA-TAATCGATAGCCG-AAGCT
86633855 ATCCCTTTTCATAATCGATAGCC-AAGGCT
1 ATCCCTTTTCATAATCGATAGCCGAA-GCT
* *
86633884 ATCCCTTTTCGTATTCGATAGCCGAAGCT
1 ATCCCTTTTCATAATCGATAGCCGAAGCT
86633913 ATCCCTTTTCAT
1 ATCCCTTTTCAT
86633925 TTTTCAATAA
Statistics
Matches: 77, Mismatches: 18, Indels: 11
0.73 0.17 0.10
Matches are distributed among these distances:
27 1 0.01
29 44 0.57
30 30 0.39
31 2 0.03
ACGTcount: A:0.22, C:0.27, G:0.13, T:0.38
Consensus pattern (29 bp):
ATCCCTTTTCATAATCGATAGCCGAAGCT
Found at i:86637984 original size:28 final size:28
Alignment explanation
Indices: 86637948--86638010 Score: 117
Period size: 28 Copynumber: 2.2 Consensus size: 28
86637938 CATATATATG
*
86637948 TTATAATAACATAAATTAAACTATGTTT
1 TTATCATAACATAAATTAAACTATGTTT
86637976 TTATCATAACATAAATTAAACTATGTTT
1 TTATCATAACATAAATTAAACTATGTTT
86638004 TTATCAT
1 TTATCAT
86638011 TCTCTCTTGA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.43, C:0.10, G:0.03, T:0.44
Consensus pattern (28 bp):
TTATCATAACATAAATTAAACTATGTTT
Found at i:86641272 original size:138 final size:138
Alignment explanation
Indices: 86641090--86641623 Score: 849
Period size: 138 Copynumber: 3.9 Consensus size: 138
86641080 GGGGTGTTAT
* * * *
86641090 AATATTAATTTTCATATCTTTTATATTTTGACCGAAATTTATTAATATAACTGTTTATATTAATA
1 AATATTAATTTCCATGTCTTTTATATTTTGACCAAAATTAATTAATATAACTGTTTATATTAATA
* * *
86641155 AATTTGTTAAAATATATACAATTAATTTTTTGTATGAACCAAATTCATATATTAATTATATTATT
66 AATTTGGTAAAATATATACAATTAATATTTTGTATGAATCAAATTCATATATTAATTATATTATT
86641220 TCCAAAAG
131 TCCAAAAG
* *
86641228 AATATTAATTTTCATGTCTTTTATATTTTGACCAAAATTAATTAATATAACTATTTATATTAATA
1 AATATTAATTTCCATGTCTTTTATATTTTGACCAAAATTAATTAATATAACTGTTTATATTAATA
86641293 AATTTGGTAAAATATATACAATTAATATTTTGTATGAATCAAATTCATATATTAATTATATTATT
66 AATTTGGTAAAATATATACAATTAATATTTTGTATGAATCAAATTCATATATTAATTATATTATT
86641358 TCCAAAAG
131 TCCAAAAG
** *
86641366 AATATTAATTTCCATGTCTTTTATATTTTGACTGAAATTAATTAATATAACTGCTTATATTAATA
1 AATATTAATTTCCATGTCTTTTATATTTTGACCAAAATTAATTAATATAACTGTTTATATTAATA
* * * *
86641431 AATTCGGTAAAATATATACAAATAATATTTTGTATGAATTAAATTCATATATTAATTATATTCTT
66 AATTTGGTAAAATATATACAATTAATATTTTGTATGAATCAAATTCATATATTAATTATATTATT
*
86641496 T-CAGAAAT
131 TCCA-AAAG
*
86641504 AATATTAATTTCCATGTCTTTTATATTTTGACCAAAATTAATTAATATAA-T-TTTTTATTAATA
1 AATATTAATTTCCATGTCTTTTATATTTTGACCAAAATTAATTAATATAACTGTTTATATTAATA
** *
86641567 AATTCAGTAAAATATATACAATTAATATATTGTATGAATCAAATTCATATATTAATT
66 AATTTGGTAAAATATATACAATTAATATTTTGTATGAATCAAATTCATATATTAATT
86641624 TTATCTATAT
Statistics
Matches: 370, Mismatches: 25, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
136 63 0.17
137 3 0.01
138 304 0.82
ACGTcount: A:0.41, C:0.08, G:0.05, T:0.46
Consensus pattern (138 bp):
AATATTAATTTCCATGTCTTTTATATTTTGACCAAAATTAATTAATATAACTGTTTATATTAATA
AATTTGGTAAAATATATACAATTAATATTTTGTATGAATCAAATTCATATATTAATTATATTATT
TCCAAAAG
Found at i:86641414 original size:71 final size:71
Alignment explanation
Indices: 86641196--86641414 Score: 179
Period size: 71 Copynumber: 3.1 Consensus size: 71
86641186 GTATGAACCA
* *
86641196 AATTCATATATTAATTATATTATTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACC
1 AATTCATATATTAATTATATTATTTCCAAAAGAATATTAATTTACATGTCTTTTATATTTTGACT
*
86641261 AAAATT
66 GAAATT
* * * ** * * * *
86641267 AATT-A-ATA-TAACTAT-TTATATT--AATA-AATTTGGTAAAATATAT-ACAATTAATATTTT
1 AATTCATATATTAATTATATTAT-TTCCAAAAGAATAT--TAATTTACATGTC-TTTTATATTTT
*
86641324 GTA-TG-AATCA
62 G-ACTGAAAT-T
*
86641334 AATTCATATATTAATTATATTATTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACT
1 AATTCATATATTAATTATATTATTTCCAAAAGAATATTAATTTACATGTCTTTTATATTTTGACT
86641399 GAAATT
66 GAAATT
*
86641405 AATTAATATA
1 AATTCATATA
86641415 ACTGCTTATA
Statistics
Matches: 107, Mismatches: 25, Indels: 32
0.65 0.15 0.20
Matches are distributed among these distances:
65 4 0.04
66 7 0.07
67 24 0.22
68 10 0.09
69 6 0.06
70 10 0.09
71 35 0.33
72 7 0.07
73 4 0.04
ACGTcount: A:0.41, C:0.08, G:0.05, T:0.46
Consensus pattern (71 bp):
AATTCATATATTAATTATATTATTTCCAAAAGAATATTAATTTACATGTCTTTTATATTTTGACT
GAAATT
Found at i:86644408 original size:27 final size:27
Alignment explanation
Indices: 86644368--86644429 Score: 110
Period size: 27 Copynumber: 2.4 Consensus size: 27
86644358 CTAATGGCCG
86644368 ATGTGAT--GAATGTGAAAGTGTATAT
1 ATGTGATAAGAATGTGAAAGTGTATAT
86644393 ATGTGATAAGAATGTGAAAGTGTATAT
1 ATGTGATAAGAATGTGAAAGTGTATAT
86644420 ATGTGATAAG
1 ATGTGATAAG
86644430 GCCTAATGGC
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
25 7 0.20
27 28 0.80
ACGTcount: A:0.39, C:0.00, G:0.27, T:0.34
Consensus pattern (27 bp):
ATGTGATAAGAATGTGAAAGTGTATAT
Found at i:86644455 original size:47 final size:47
Alignment explanation
Indices: 86644393--86644664 Score: 436
Period size: 47 Copynumber: 5.7 Consensus size: 47
86644383 AAGTGTATAT
86644393 ATGTGATAAGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGAT--GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
86644442 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
86644489 ATGTGACGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
86644536 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
86644583 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
86644630 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
86644665 TCCCGAAGGG
Statistics
Matches: 211, Mismatches: 12, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
47 204 0.97
49 7 0.03
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:86644839 original size:37 final size:37
Alignment explanation
Indices: 86644783--86644861 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
86644773 CCGAGCTCTA
* * *
86644783 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
86644820 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
86644857 AAGAC
1 AAGAC
86644862 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:86662858 original size:129 final size:129
Alignment explanation
Indices: 86662607--86662863 Score: 453
Period size: 128 Copynumber: 2.0 Consensus size: 129
86662597 AGGTTTTAAT
* * *
86662607 ACAAACAAGTTTTTTTAGTAAAACTGCGTTTTACAAAACTCACTTCTATGTGACATCATAGATAC
1 ACAAACAAGTTTTTTTAGTAAAACTACATTTTACAAAACTCACTTCTATGTGACATCATAAATAC
86662672 AGCCCTAACGTCTAGGCCGATTTGGGGTGTTACATTTAGTGGTATCAGAGCCAGGTTACATAAC
66 AGCCCTAACGTCTAGGCCGATTTGGGGTGTTACATTTAGTGGTATCAGAGCCAGGTTACATAAC
*
86662736 ACAAACAAG-TTTTTTAGTAAAACTATATTTTACAAAACTCACTTCTATGTGACATCATAAATAC
1 ACAAACAAGTTTTTTTAGTAAAACTACATTTTACAAAACTCACTTCTATGTGACATCATAAATAC
*
86662800 AGCCCTAACGTCTAGGCCAGGTTTGGGGTGTTACATTTAGTGGTATCAGAGCCAGGTTACATAA
66 AGCCCTAACGTCTAGGCC-GATTTGGGGTGTTACATTTAGTGGTATCAGAGCCAGGTTACATAA
86662864 ACTCGGCTGT
Statistics
Matches: 122, Mismatches: 5, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
128 69 0.57
129 53 0.43
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31
Consensus pattern (129 bp):
ACAAACAAGTTTTTTTAGTAAAACTACATTTTACAAAACTCACTTCTATGTGACATCATAAATAC
AGCCCTAACGTCTAGGCCGATTTGGGGTGTTACATTTAGTGGTATCAGAGCCAGGTTACATAAC
Found at i:86673723 original size:45 final size:46
Alignment explanation
Indices: 86673652--86673775 Score: 137
Period size: 45 Copynumber: 2.7 Consensus size: 46
86673642 CACCACAGTA
* *
86673652 AGAGCTTACTATTTTCAGCTCAATAGAGTTTACCATTTCAACTCGT-AT
1 AGAGCTTACT-GTTTCAGCTCAATAGAGCTTACCATTTCAACT--TAAT
* ** *
86673700 -GAGCTTACTGTTT-AGCTCGATAGAGCTTACTTTTTCAGCTTAAT
1 AGAGCTTACTGTTTCAGCTCAATAGAGCTTACCATTTCAACTTAAT
*
86673744 AGAGCTTACTGTTTCAGCTCAATAAAGCTTAC
1 AGAGCTTACTGTTTCAGCTCAATAGAGCTTAC
86673776 TGTTCATCAG
Statistics
Matches: 65, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.02
44 2 0.03
45 35 0.54
46 18 0.28
47 9 0.14
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.37
Consensus pattern (46 bp):
AGAGCTTACTGTTTCAGCTCAATAGAGCTTACCATTTCAACTTAAT
Found at i:86673745 original size:23 final size:23
Alignment explanation
Indices: 86673652--86673789 Score: 136
Period size: 23 Copynumber: 5.9 Consensus size: 23
86673642 CACCACAGTA
*
86673652 AGAGCTTACTATTTTCAGCTCAAT
1 AGAGCTTACT-GTTTCAGCTCAAT
* ** * *
86673676 AGAGTTTACCATTTCAACTC-GT
1 AGAGCTTACTGTTTCAGCTCAAT
*
86673698 ATGAGCTTACTGTTT-AGCTCGAT
1 A-GAGCTTACTGTTTCAGCTCAAT
* *
86673721 AGAGCTTACTTTTTCAGCTTAAT
1 AGAGCTTACTGTTTCAGCTCAAT
86673744 AGAGCTTACTGTTTCAGCTCAAT
1 AGAGCTTACTGTTTCAGCTCAAT
*
86673767 AAAGCTTACTGTTCATCAGCTCA
1 AGAGCTTACTGTT--TCAGCTCA
86673790 GGAGGAGCTT
Statistics
Matches: 93, Mismatches: 16, Indels: 9
0.79 0.14 0.08
Matches are distributed among these distances:
22 18 0.19
23 59 0.63
24 8 0.09
25 8 0.09
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.37
Consensus pattern (23 bp):
AGAGCTTACTGTTTCAGCTCAAT
Found at i:86673773 original size:68 final size:69
Alignment explanation
Indices: 86673652--86673779 Score: 170
Period size: 68 Copynumber: 1.9 Consensus size: 69
86673642 CACCACAGTA
* * *
86673652 AGAGCTTACTATTTTCAGCTCAATAGAGTTTACCATTTCAACTCGTATGAGCTTACTGTTTAGCT
1 AGAGCTTACTATTTTCAGCTCAATAGAGCTTACCATTTCAACTCATATAAGCTTACTGTTTAGCT
86673717 CGAT
66 CGAT
* ** *
86673721 AGAGCTTACT-TTTTCAGCTTAATAGAGCTTACTGTTTCAGCTCA-ATAAAGCTTACTGTT
1 AGAGCTTACTATTTTCAGCTCAATAGAGCTTACCATTTCAACTCATAT-AAGCTTACTGTT
86673780 CATCAGCTCA
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
67 2 0.04
68 39 0.76
69 10 0.20
ACGTcount: A:0.27, C:0.20, G:0.16, T:0.38
Consensus pattern (69 bp):
AGAGCTTACTATTTTCAGCTCAATAGAGCTTACCATTTCAACTCATATAAGCTTACTGTTTAGCT
CGAT
Found at i:86676518 original size:48 final size:47
Alignment explanation
Indices: 86676451--86676597 Score: 186
Period size: 48 Copynumber: 3.1 Consensus size: 47
86676441 CACATGGTAG
* *
86676451 GATGCCAATGCCATATCCCAGATATGGTCTTACATAGGATCACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACAT-GGATCACATATC
** *
86676499 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCGTAGATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACAT-GGATCACATATC
* * * *
86676547 GATGCCAATTCCAAGTCCCAAACATGGTTTTACATGAGATCACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATG-GATCACATATC
86676595 GAT
1 GAT
86676598 TCCGATAGGC
Statistics
Matches: 85, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
47 1 0.01
48 84 0.99
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (47 bp):
GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGATCACATATC
Found at i:86677009 original size:13 final size:13
Alignment explanation
Indices: 86676991--86677015 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
86676981 TAATGTATAT
86676991 GTGTGAAAATTTC
1 GTGTGAAAATTTC
86677004 GTGTGAAAATTT
1 GTGTGAAAATTT
86677016 TATCGTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:86678571 original size:40 final size:40
Alignment explanation
Indices: 86678526--86678631 Score: 158
Period size: 41 Copynumber: 2.6 Consensus size: 40
86678516 TGGCCAAACG
86678526 CACGCCCGTGTCCTGGCCCGTGTCCTTCACACGGCCTAGA
1 CACGCCCGTGTCCTGGCCCGTGTCCTTCACACGGCCTAGA
* *
86678566 CACGCCCGCGTCCTTGGCCTGTGTCCTTCACACGGCCTAGA
1 CACGCCCGTGTCC-TGGCCCGTGTCCTTCACACGGCCTAGA
** *
86678607 CACGCCCGTGTGGTCGCCCGTGTCC
1 CACGCCCGTGTCCTGGCCCGTGTCC
86678632 AAAAACTCGA
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
40 22 0.38
41 36 0.62
ACGTcount: A:0.10, C:0.42, G:0.26, T:0.21
Consensus pattern (40 bp):
CACGCCCGTGTCCTGGCCCGTGTCCTTCACACGGCCTAGA
Found at i:86680041 original size:55 final size:54
Alignment explanation
Indices: 86679954--86680208 Score: 244
Period size: 55 Copynumber: 4.8 Consensus size: 54
86679944 ATTAGGGTTT
*
86679954 AAGGATACCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGAAATTGGTAA-GTTTCTAAGGC
* * * * * * *
86680009 AAGGAAATCATGTAAGACCATGTCAAGACATGG-CATTGATAAGTTACTATAAGGTA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGAAATTGGTAAGTT--TCTAAGG-C
* * *
86680065 AAGG-T-CTCATGTAAGACCATGCCAAGGCATGG-CATTGGTGAG-TTCATAAGGC
1 AAGGATAC-CATGTAAGACCATGCCAAGACATGGAAATTGGTAAGTTTC-TAAGGC
*
86680117 AAGGATACCATGTAAGACCATGTCAAGACATGGAAA-TGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGAAATTGGTAAGTTTCTAAGGC
* * *
86680166 AAGGATACCACGTAAGACCATGACAAGTCATGGAAA-TGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGAAATTGGTAAG
86680209 AAAACCGTGT
Statistics
Matches: 168, Mismatches: 23, Indels: 24
0.78 0.11 0.11
Matches are distributed among these distances:
49 40 0.24
52 7 0.04
53 38 0.23
54 13 0.08
55 66 0.39
56 4 0.02
ACGTcount: A:0.37, C:0.16, G:0.25, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGAAATTGGTAAGTTTCTAAGGC
Found at i:86680160 original size:108 final size:110
Alignment explanation
Indices: 86679962--86680161 Score: 307
Period size: 108 Copynumber: 1.8 Consensus size: 110
86679952 TTAAGGATAC
*
86679962 CATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGAC
1 CATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGAC
* *
86680027 CATGTCAAGACATGGCATTGATAAGTTACTATAAGGTAAAGGTCT
66 CATGTCAAGACATGGAAATGATAAGTTACTATAAGGTAAAGGTCT
* * *
86680072 CATGTAAGACCATGCCAAGGCATGG-CATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAGA
1 CATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAGA
*
86680134 CCATGTCAAGACATGGAAATGGTAAGTT
65 CCATGTCAAGACATGGAAATGATAAGTT
86680162 TCAAAAGGAT
Statistics
Matches: 82, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.57
109 7 0.09
110 25 0.30
ACGTcount: A:0.35, C:0.15, G:0.26, T:0.23
Consensus pattern (110 bp):
CATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGAC
CATGTCAAGACATGGAAATGATAAGTTACTATAAGGTAAAGGTCT
Found at i:86680303 original size:23 final size:24
Alignment explanation
Indices: 86680277--86680321 Score: 83
Period size: 23 Copynumber: 1.9 Consensus size: 24
86680267 AAGGTAAGGT
86680277 AAGGTAAGACAAGTT-ATGCTAAA
1 AAGGTAAGACAAGTTCATGCTAAA
86680300 AAGGTAAGACAAGTTCATGCTA
1 AAGGTAAGACAAGTTCATGCTA
86680322 GAAGAGCAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
23 15 0.71
24 6 0.29
ACGTcount: A:0.44, C:0.11, G:0.22, T:0.22
Consensus pattern (24 bp):
AAGGTAAGACAAGTTCATGCTAAA
Found at i:86680421 original size:16 final size:16
Alignment explanation
Indices: 86680400--86680430 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
86680390 ATAAATTTGA
86680400 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
86680416 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
86680431 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:86680990 original size:51 final size:49
Alignment explanation
Indices: 86680935--86681034 Score: 182
Period size: 51 Copynumber: 2.0 Consensus size: 49
86680925 ATGGATTTAG
86680935 ATAGTGAATGAGATATAGAATTAAATCTTATTGATTCTATTTTCATATGAA
1 ATAGTGAATGAGATATAGAATTAAATCTTATTGATTCTA--TTCATATGAA
86680986 ATAGTGAATGAGATATAGAATTAAATCTTATTGATTCTATTCATATGAA
1 ATAGTGAATGAGATATAGAATTAAATCTTATTGATTCTATTCATATGAA
86681035 GAAACATAGT
Statistics
Matches: 49, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
49 10 0.20
51 39 0.80
ACGTcount: A:0.40, C:0.06, G:0.14, T:0.40
Consensus pattern (49 bp):
ATAGTGAATGAGATATAGAATTAAATCTTATTGATTCTATTCATATGAA
Found at i:86687821 original size:55 final size:52
Alignment explanation
Indices: 86687710--86687964 Score: 209
Period size: 55 Copynumber: 4.8 Consensus size: 52
86687700 ATTAGGGTTT
* * * *
86687710 AAGGATACCATGTAAGACCATGCCAAGGCATAGCAATTGGTAAGGTTTC-TAGGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGC-A-TGGTAA-G-TTCATAAGGC
* * *
86687765 AAGGAAATCATGTAAGACCATGTCAAGACGTGGCATGGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATGG-TAAGTT-C-ATAAGGC
* * * *
86687820 AAAGG-TCCCATGTAAGACCATGCCAAGTCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGCA-TGGTAAGTTCATAAGGC
*
86687873 AAAGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT--TCAA---
1 AAGGATACCATGTAAGACCATGTCAAGACATGGC-ATGGTAAGTTCAT-AAGGC
* * * *
86687922 AAGGATACCACGTAAGACCATGACAAGTCATGGAAATGGTAAG
1 AAGGATACCATGTAAGACCATGTCAAGACATGG-CATGGTAAG
86687965 GTACCCGTTT
Statistics
Matches: 166, Mismatches: 24, Indels: 26
0.77 0.11 0.12
Matches are distributed among these distances:
49 37 0.22
51 1 0.01
52 7 0.04
53 46 0.28
54 6 0.04
55 62 0.37
56 7 0.04
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.21
Consensus pattern (52 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATGGTAAGTTCATAAGGC
Found at i:86687916 original size:108 final size:110
Alignment explanation
Indices: 86687717--86687917 Score: 284
Period size: 108 Copynumber: 1.8 Consensus size: 110
86687707 TTTAAGGATA
* * *
86687717 CCATGTAAGACCATGCCAAGGCATAGCAATTGGTAAGGTTTCTAGGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATAGCAATTGGTAAGGTTTCTAAGGCAAAGAAACCATGTAAGA
*
86687782 CCATGTCAAGACGTGGCATGGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCATGGATAAGTTACTATAAGGCAAAGGTC
* * * *
86687827 CCATGTAAGACCATGCCAAGTCATGGC-ATTGGTGA-G-TTCATAAGGCAAAGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATAGCAATTGGTAAGGTTTC-TAAGGCAAAGAAACCATGTAAG
86687889 ACCATGTCAAGACATGGCAATGG-TAAGTT
65 ACCATGTCAAGACATGGC-ATGGATAAGTT
86687918 TCAAAAGGAT
Statistics
Matches: 81, Mismatches: 8, Indels: 6
0.85 0.08 0.06
Matches are distributed among these distances:
107 3 0.04
108 42 0.52
109 11 0.14
110 25 0.31
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.22
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATAGCAATTGGTAAGGTTTCTAAGGCAAAGAAACCATGTAAGA
CCATGTCAAGACATGGCATGGATAAGTTACTATAAGGCAAAGGTC
Found at i:86687954 original size:49 final size:50
Alignment explanation
Indices: 86687831--86687964 Score: 146
Period size: 49 Copynumber: 2.6 Consensus size: 50
86687821 AAGGTCCCAT
* * * *
86687831 GTAAGACCATGCCAAGTCATGGCATTGGTGAGTTCATAAGGCAAAGATACCAT
1 GTAAGACCATGACAAGTCATGGCAATGGTAAGTTCA-AA-G-AAAGATACCAC
* * *
86687884 GTAAGACCATGTCAAGACATGGCAATGGTAAGTTTC-AA-AAGGATACCAC
1 GTAAGACCATGACAAGTCATGGCAATGGTAAG-TTCAAAGAAAGATACCAC
*
86687933 GTAAGACCATGACAAGTCATGGAAATGGTAAG
1 GTAAGACCATGACAAGTCATGGCAATGGTAAG
86687965 GTACCCGTTT
Statistics
Matches: 71, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
49 38 0.54
52 2 0.03
53 28 0.39
54 3 0.04
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.21
Consensus pattern (50 bp):
GTAAGACCATGACAAGTCATGGCAATGGTAAGTTCAAAGAAAGATACCAC
Found at i:86688177 original size:16 final size:16
Alignment explanation
Indices: 86688156--86688186 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
86688146 ATAAATTTGA
86688156 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
86688172 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
86688187 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:86691323 original size:93 final size:93
Alignment explanation
Indices: 86691211--86691381 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
86691201 GCCCCTAAGT
*
86691211 GAACTCGGACTCAACTCAACGAGCTC-GAGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGGA-CATTCGCATCCATAAGTGAACTCGGACTCAACTCA
* *
86691275 ACGAGTTTGGATGCCTAGTTACATTTCAC
65 ACAAGTTCGGATGCCTAGTTACATTTCAC
* *
86691304 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCCA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
86691369 CAAGTTCGGATGC
66 CAAGTTCGGATGC
86691382 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
93 70 0.97
94 2 0.03
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CAAGTTCGGATGCCTAGTTACATTTCAC
Found at i:86691377 original size:46 final size:47
Alignment explanation
Indices: 86691206--86691378 Score: 187
Period size: 46 Copynumber: 3.7 Consensus size: 47
86691196 AACCCGCCCC
* *
86691206 TAAGTGAACTCGGACTCAACTCAACGAGCTC-GAGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCATCCA
* * *
86691252 TAAGTGAACTCGGACTCAACTCAACGAGTTTGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-G-C-A-TTCGCATCCA
* *
86691300 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA-CATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCATCCA
* *
86691345 TAAGTGAACTCGGACTCAACTCCACAAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
86691379 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 56 0.54
47 30 0.29
48 3 0.03
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (47 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCATCCA
Found at i:86691832 original size:30 final size:30
Alignment explanation
Indices: 86691798--86691857 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
86691788 ATTTAATACG
86691798 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
86691828 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
86691858 GCTCGGAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:86693802 original size:30 final size:30
Alignment explanation
Indices: 86693758--86693846 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 30
86693748 CAAAGATAAC
*
86693758 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCGGAATAAAGAAATCCAAGATA
*
86693787 GAGAAACCCGGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGGAATAAAGAAATCCAAG-ATA
* * *
86693817 AAGAGATCCAGG-ATAAAGAAACCCAAGATA
1 AAGA-AACCCGGAATAAAGAAATCCAAGATA
86693847 CGATACTATG
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
29 9 0.18
30 34 0.68
31 7 0.14
ACGTcount: A:0.56, C:0.16, G:0.18, T:0.10
Consensus pattern (30 bp):
AAGAAACCCGGAATAAAGAAATCCAAGATA
Found at i:86693806 original size:15 final size:14
Alignment explanation
Indices: 86693758--86693840 Score: 58
Period size: 15 Copynumber: 5.6 Consensus size: 14
86693748 CAAAGATAAC
*
86693758 AAGAAAACCGAATA
1 AAGAAACCCGAATA
* *
86693772 AAGAAATCCAAGATA
1 AAGAAACCCGA-ATA
*
86693787 GAGAAACCCGGAATA
1 AAGAAACCC-GAATA
*
86693802 AAGAAATCCAGAATA
1 AAGAAA-CCCGAATA
* * *
86693817 AAGAGATCCAGGATA
1 AAGA-AACCCGAATA
86693832 AAGAAACCC
1 AAGAAACCC
86693841 AAGATACGAT
Statistics
Matches: 54, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
14 12 0.22
15 38 0.70
16 4 0.07
ACGTcount: A:0.55, C:0.17, G:0.18, T:0.10
Consensus pattern (14 bp):
AAGAAACCCGAATA
Found at i:86693846 original size:15 final size:15
Alignment explanation
Indices: 86693769--86693846 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
86693759 AGAAAACCGA
86693769 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* **
86693784 ATAGAGAAA-CCCGG
1 ATAAAGAAATCCAAG
86693798 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
86693813 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
86693829 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
86693844 ATA
1 ATA
86693847 CGATACTATG
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
14 3 0.06
15 44 0.88
16 3 0.06
ACGTcount: A:0.55, C:0.15, G:0.18, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:86696948 original size:46 final size:45
Alignment explanation
Indices: 86696898--86697159 Score: 203
Period size: 46 Copynumber: 5.7 Consensus size: 45
86696888 TTGAGCATCT
* *
86696898 GAACTCGTGGAGTTGAGCCCGAGTTCACTTATGGATGCGAATGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATGTCC
* * * *
86696944 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G--TCC
* * *
86696991 GAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATGTCC
* * * * *
86697037 GAGCTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G--TCC
* * *
86697084 GAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGTGAACGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATGTCC
*
86697130 GAGCTCGTTGAGTTGAGTCCGAGTTCACTT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTT
86697160 TGGGGCGAGT
Statistics
Matches: 167, Mismatches: 31, Indels: 36
0.71 0.13 0.15
Matches are distributed among these distances:
42 4 0.02
43 7 0.04
45 6 0.04
46 80 0.48
47 54 0.32
48 6 0.04
50 6 0.04
51 4 0.02
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (45 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATGTCC
Found at i:86697003 original size:47 final size:47
Alignment explanation
Indices: 86696941--86697109 Score: 204
Period size: 47 Copynumber: 3.6 Consensus size: 47
86696931 GATGCGAATG
86696941 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
* * * * *
86696988 TCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAAC---GC-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGGCA
*
86697035 -CCGAGCTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
*
86697081 TCCGAACTCGTTGAGTTGAGTTCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
86697110 ACTTATGGAT
Statistics
Matches: 100, Mismatches: 13, Indels: 18
0.76 0.10 0.14
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
45 4 0.04
46 26 0.26
47 54 0.54
48 4 0.04
50 3 0.03
51 3 0.03
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
Found at i:86697051 original size:93 final size:93
Alignment explanation
Indices: 86696892--86697155 Score: 456
Period size: 93 Copynumber: 2.8 Consensus size: 93
86696882 GGATGGTTGA
* * ** * * *
86696892 GCATCTGAACTCGTGGAGTTGAGCCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
86696957 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
86696985 GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
86697050 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
86697078 GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGTGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
86697143 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
86697156 ACTTTGGGGC
Statistics
Matches: 163, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 163 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:86717324 original size:21 final size:21
Alignment explanation
Indices: 86717290--86717341 Score: 86
Period size: 21 Copynumber: 2.4 Consensus size: 21
86717280 TTAAGTGTTC
86717290 TTTTACATTAACTTTACTACCA
1 TTTT-CATTAACTTTACTACCA
*
86717312 TTTTCATTCACTTTACTACCA
1 TTTTCATTAACTTTACTACCA
86717333 TTTTCATTA
1 TTTTCATTA
86717342 TCTCTGAGCT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
21 24 0.86
22 4 0.14
ACGTcount: A:0.27, C:0.23, G:0.00, T:0.50
Consensus pattern (21 bp):
TTTTCATTAACTTTACTACCA
Found at i:86723241 original size:15 final size:15
Alignment explanation
Indices: 86723221--86723263 Score: 63
Period size: 14 Copynumber: 3.0 Consensus size: 15
86723211 GAACCAAGTG
86723221 TTTTTCTTTTCTTTT
1 TTTTTCTTTTCTTTT
86723236 TTTTTCTTTT-TTTT
1 TTTTTCTTTTCTTTT
*
86723250 TTTTT-TTTGCTTTT
1 TTTTTCTTTTCTTTT
86723264 CAAACTTGTA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
13 3 0.12
14 13 0.50
15 10 0.38
ACGTcount: A:0.00, C:0.09, G:0.02, T:0.88
Consensus pattern (15 bp):
TTTTTCTTTTCTTTT
Found at i:86723263 original size:10 final size:10
Alignment explanation
Indices: 86723221--86723257 Score: 58
Period size: 10 Copynumber: 3.7 Consensus size: 10
86723211 GAACCAAGTG
86723221 TTTTTCTTTTC
1 TTTTT-TTTTC
86723232 TTTTTTTTTC
1 TTTTTTTTTC
86723242 TTTTTTTTT-
1 TTTTTTTTTC
86723251 TTTTTTT
1 TTTTTTT
86723258 GCTTTTCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 7 0.27
10 14 0.54
11 5 0.19
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (10 bp):
TTTTTTTTTC
Found at i:86723831 original size:19 final size:17
Alignment explanation
Indices: 86723790--86723830 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
86723780 GAAAAGAATA
86723790 ATAAAAGAAAAGGGGAG
1 ATAAAAGAAAAGGGGAG
*
86723807 ATAAAAGAGAAGGGGAG
1 ATAAAAGAAAAGGGGAG
86723824 ATTAAAA
1 A-TAAAA
86723831 ATAAAAATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 17 0.77
18 5 0.23
ACGTcount: A:0.59, C:0.00, G:0.32, T:0.10
Consensus pattern (17 bp):
ATAAAAGAAAAGGGGAG
Found at i:86726116 original size:9 final size:9
Alignment explanation
Indices: 86726095--86726160 Score: 61
Period size: 9 Copynumber: 7.7 Consensus size: 9
86726085 TAAAATATGT
86726095 TTTTTATAA
1 TTTTTATAA
86726104 --TTT-TAA
1 TTTTTATAA
*
86726110 TTTTTTTAA
1 TTTTTATAA
*
86726119 TTTTTAAAAA
1 TTTTT-ATAA
86726129 GTTTTTATAA
1 -TTTTTATAA
86726139 TTTTTATAA
1 TTTTTATAA
86726148 -TTTTA-AA
1 TTTTTATAA
86726155 TTTTTA
1 TTTTTA
86726161 AAAATTAAGT
Statistics
Matches: 48, Mismatches: 3, Indels: 13
0.75 0.05 0.20
Matches are distributed among these distances:
6 3 0.06
7 5 0.10
8 13 0.27
9 17 0.35
10 5 0.10
11 5 0.10
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (9 bp):
TTTTTATAA
Found at i:86726144 original size:36 final size:37
Alignment explanation
Indices: 86726072--86726165 Score: 104
Period size: 36 Copynumber: 2.5 Consensus size: 37
86726062 TTTAATTTAC
*
86726072 TTTTTAAGTTTTTTAAAATATGTTTTTTATAATTTTA-ATT
1 TTTTTAA--TTTTTAAAA-ATGTTTTTTATAATTTTATA-A
86726112 TTTTTAATTTTTAAAAA-G-TTTTTATAATTTTTATAA
1 TTTTTAATTTTTAAAAATGTTTTTTATAA-TTTTATAA
*
86726148 TTTTAAATTTTTAAAAAT
1 TTTTTAATTTTTAAAAAT
86726166 TAAGTAAATA
Statistics
Matches: 49, Mismatches: 2, Indels: 9
0.82 0.03 0.15
Matches are distributed among these distances:
35 9 0.18
36 22 0.45
37 2 0.04
38 9 0.18
40 7 0.14
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (37 bp):
TTTTTAATTTTTAAAAATGTTTTTTATAATTTTATAA
Found at i:86731111 original size:41 final size:40
Alignment explanation
Indices: 86731038--86731205 Score: 164
Period size: 41 Copynumber: 4.1 Consensus size: 40
86731028 CCTTGAGTCC
86731038 AGCAAGCTTCGTG-CTAGTGCATATTAT-TAGGCTTTGTGCCT
1 AGCAAGCTTCGTGTC-AGTG--TATTATATAGGCTTTGTGCCT
*
86731079 AGTAAGCTTCGTGTCAGTGTATTATATCAGGCTTTGTGCCT
1 AGCAAGCTTCGTGTCAGTGTATTATAT-AGGCTTTGTGCCT
* * * *
86731120 AACAGGCTTCGTGTCGGTGTATCGTA-ATAGGCTTTGAGCCT
1 AGCAAGCTTCGTGTCAGTGTAT--TATATAGGCTTTGTGCCT
* * *
86731161 AGCAGGCTTCGTGTC-GATGTATTATATTAAGCTTTATGCCT
1 AGCAAGCTTCGTGTCAG-TGTATTATA-TAGGCTTTGTGCCT
86731202 AGCA
1 AGCA
86731206 GGTTTCATGC
Statistics
Matches: 109, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
39 8 0.07
40 3 0.03
41 93 0.85
42 3 0.03
43 2 0.02
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (40 bp):
AGCAAGCTTCGTGTCAGTGTATTATATAGGCTTTGTGCCT
Found at i:86731182 original size:82 final size:81
Alignment explanation
Indices: 86731065--86731273 Score: 208
Period size: 82 Copynumber: 2.6 Consensus size: 81
86731055 TGCATATTAT
* * * *
86731065 TAGGCTTTGTGCCTAGTAAGCTTCGTGTC-AGTGTATTATATCAGGCTTTGTGCCTAACAGGCTT
1 TAGGCTTTGAGCCTAGCAGGCTTCGTGTCGA-TGTATTATATCAGGCTTTATGCCTAACAGGCTT
* *
86731129 CGTG-TCGGTGTATCGTAA
65 CATGCT-GATGTATCGT-A
* * * *
86731147 TAGGCTTTGAGCCTAGCAGGCTTCGTGTCGATGTATTATATTAAGCTTTATGCCTAGCAGGTTTC
1 TAGGCTTTGAGCCTAGCAGGCTTCGTGTCGATGTATTATATCAGGCTTTATGCCTAACAGGCTTC
* *
86731212 ATGCTGATGTGTTGTA
66 ATGCTGATGTATCGTA
* * * *
86731228 TCAGG-TCTTGAGCCTAGCAGTCTTTGTGCCGATGTATTGTATCAGG
1 T-AGGCT-TTGAGCCTAGCAGGCTTCGTGTCGATGTATTATATCAGG
86731274 TAAGTTGTAC
Statistics
Matches: 105, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
81 3 0.03
82 100 0.95
83 2 0.02
ACGTcount: A:0.19, C:0.18, G:0.27, T:0.37
Consensus pattern (81 bp):
TAGGCTTTGAGCCTAGCAGGCTTCGTGTCGATGTATTATATCAGGCTTTATGCCTAACAGGCTTC
ATGCTGATGTATCGTA
Found at i:86731206 original size:41 final size:41
Alignment explanation
Indices: 86731062--86731265 Score: 164
Period size: 41 Copynumber: 5.0 Consensus size: 41
86731052 TAGTGCATAT
* * *
86731062 TATTAGGCTTTGTGCCTAGTAAGCTTCGTGTC-AGTGTATTA
1 TATTAGGCTTTATGCCTAGCAGGCTTCGTGTCGA-TGTATTA
* * * * **
86731103 TATCAGGCTTTGTGCCTAACAGGCTTCGTGTCGGTGTATCG
1 TATTAGGCTTTATGCCTAGCAGGCTTCGTGTCGATGTATTA
*
86731144 TAATAGGCTTTGA-GCCTAGCAGGCTTCGTGTCGATGTATTA
1 TATTAGGCTTT-ATGCCTAGCAGGCTTCGTGTCGATGTATTA
* * * * *
86731185 TATTAAGCTTTATGCCTAGCAGGTTTCATG-CTGATGTGTTG
1 TATTAGGCTTTATGCCTAGCAGGCTTCGTGTC-GATGTATTA
* * * * *
86731226 TATCAGGTCTTGA-GCCTAGCAGTCTTTGTGCCGATGTATT
1 TATTAGG-CTTTATGCCTAGCAGGCTTCGTGTCGATGTATT
86731266 GTATCAGGTA
Statistics
Matches: 129, Mismatches: 28, Indels: 12
0.76 0.17 0.07
Matches are distributed among these distances:
40 2 0.02
41 122 0.95
42 5 0.04
ACGTcount: A:0.19, C:0.18, G:0.26, T:0.38
Consensus pattern (41 bp):
TATTAGGCTTTATGCCTAGCAGGCTTCGTGTCGATGTATTA
Found at i:86734523 original size:18 final size:18
Alignment explanation
Indices: 86734477--86734524 Score: 51
Period size: 18 Copynumber: 2.7 Consensus size: 18
86734467 AGGTGTATTT
* **
86734477 CATAATCAGATACAGATG
1 CATAATCAGATTCAGACA
* *
86734495 CATATTTAGATTCAGACA
1 CATAATCAGATTCAGACA
86734513 CATAATCAGATT
1 CATAATCAGATT
86734525 TAGATGCAAA
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.42, C:0.17, G:0.12, T:0.29
Consensus pattern (18 bp):
CATAATCAGATTCAGACA
Found at i:86734732 original size:20 final size:20
Alignment explanation
Indices: 86734707--86734747 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
86734697 CCAGACAGTT
86734707 ATTGCAGT-TTAACCGCCAAA
1 ATTGCAGTATT-ACCGCCAAA
*
86734727 ATTGCAGTATTACTGCCAAA
1 ATTGCAGTATTACCGCCAAA
86734747 A
1 A
86734748 AACACTTCCG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 17 0.89
21 2 0.11
ACGTcount: A:0.37, C:0.22, G:0.15, T:0.27
Consensus pattern (20 bp):
ATTGCAGTATTACCGCCAAA
Found at i:86739533 original size:20 final size:21
Alignment explanation
Indices: 86739488--86739533 Score: 51
Period size: 20 Copynumber: 2.3 Consensus size: 21
86739478 CCATACAGAC
* *
86739488 CATATCTTAACATATTATAAT
1 CATATCATAACATATCATAAT
*
86739509 -GTATCATAACATATCAT-AT
1 CATATCATAACATATCATAAT
86739528 CATATC
1 CATATC
86739534 GAATCATAAC
Statistics
Matches: 20, Mismatches: 4, Indels: 3
0.74 0.15 0.11
Matches are distributed among these distances:
19 2 0.10
20 18 0.90
ACGTcount: A:0.41, C:0.17, G:0.02, T:0.39
Consensus pattern (21 bp):
CATATCATAACATATCATAAT
Found at i:86739801 original size:13 final size:15
Alignment explanation
Indices: 86739783--86739816 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
86739773 AAACACAAGC
86739783 ATATCATA-AT-CAT
1 ATATCATACATACAT
86739796 ATATCATACATACAT
1 ATATCATACATACAT
86739811 ATATCA
1 ATATCA
86739817 GAAATTGTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 8 0.42
14 2 0.11
15 9 0.47
ACGTcount: A:0.47, C:0.18, G:0.00, T:0.35
Consensus pattern (15 bp):
ATATCATACATACAT
Found at i:86743407 original size:10 final size:10
Alignment explanation
Indices: 86743392--86743430 Score: 60
Period size: 10 Copynumber: 3.9 Consensus size: 10
86743382 TGAGGATTAG
86743392 TGTGCAAAAT
1 TGTGCAAAAT
86743402 TGTGCAAAAT
1 TGTGCAAAAT
*
86743412 TGTTCAAAAT
1 TGTGCAAAAT
*
86743422 TGTTCAAAA
1 TGTGCAAAA
86743431 ATGGAAAATG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
10 28 1.00
ACGTcount: A:0.41, C:0.10, G:0.15, T:0.33
Consensus pattern (10 bp):
TGTGCAAAAT
Found at i:86749416 original size:19 final size:19
Alignment explanation
Indices: 86749394--86749430 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
86749384 TCGGTTTGAT
86749394 AATGTGTGAACAATTCTAA
1 AATGTGTGAACAATTCTAA
86749413 AATGTGTGAACAATTCTA
1 AATGTGTGAACAATTCTA
86749431 GCGAATAAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.41, C:0.11, G:0.16, T:0.32
Consensus pattern (19 bp):
AATGTGTGAACAATTCTAA
Found at i:86753634 original size:24 final size:24
Alignment explanation
Indices: 86753607--86753655 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
86753597 CTACGCCAAG
*
86753607 CTGATCCGAATACGACTGGAAAAC
1 CTGATCCAAATACGACTGGAAAAC
86753631 CTGATCCAAATACGACTGGAAAAC
1 CTGATCCAAATACGACTGGAAAAC
86753655 C
1 C
86753656 CAGTTCATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.39, C:0.27, G:0.18, T:0.16
Consensus pattern (24 bp):
CTGATCCAAATACGACTGGAAAAC
Found at i:86760772 original size:20 final size:20
Alignment explanation
Indices: 86760733--86760778 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
86760723 TCAATTAATT
* * *
86760733 TTTTAAAAACATATTTCTTC
1 TTTTAAAAAAAAATTGCTTC
86760753 TTTTAAAAAAAAATTGCTTC
1 TTTTAAAAAAAAATTGCTTC
86760773 TGTTTA
1 T-TTTA
86760779 TGATTAATTA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 18 0.82
21 4 0.18
ACGTcount: A:0.37, C:0.11, G:0.04, T:0.48
Consensus pattern (20 bp):
TTTTAAAAAAAAATTGCTTC
Found at i:86766470 original size:22 final size:22
Alignment explanation
Indices: 86766445--86766487 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
86766435 ACTCCTCATT
86766445 CCTTAAT-TTCCTCACCAAAATC
1 CCTTAATCTT-CTCACCAAAATC
*
86766467 CCTTAATCTTCTCGCCAAAAT
1 CCTTAATCTTCTCACCAAAAT
86766488 TGTCCACCCC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 17 0.89
23 2 0.11
ACGTcount: A:0.30, C:0.35, G:0.02, T:0.33
Consensus pattern (22 bp):
CCTTAATCTTCTCACCAAAATC
Found at i:86767433 original size:40 final size:40
Alignment explanation
Indices: 86767384--86767459 Score: 152
Period size: 40 Copynumber: 1.9 Consensus size: 40
86767374 TTTTAAGCTA
86767384 ATACGAACTTCACAACTTCTTCGATTTAAGCTAATAATAT
1 ATACGAACTTCACAACTTCTTCGATTTAAGCTAATAATAT
86767424 ATACGAACTTCACAACTTCTTCGATTTAAGCTAATA
1 ATACGAACTTCACAACTTCTTCGATTTAAGCTAATA
86767460 CGGTTTATGT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.37, C:0.21, G:0.08, T:0.34
Consensus pattern (40 bp):
ATACGAACTTCACAACTTCTTCGATTTAAGCTAATAATAT
Found at i:86779889 original size:20 final size:20
Alignment explanation
Indices: 86779864--86779930 Score: 98
Period size: 20 Copynumber: 3.3 Consensus size: 20
86779854 TTGTACGAAA
86779864 TTTGCACTTCGATGCCCCTG
1 TTTGCACTTCGATGCCCCTG
86779884 TTTGCACTTCGATGCCCCTG
1 TTTGCACTTCGATGCCCCTG
* * *
86779904 TCTGCACTTTGGTGCCCCTG
1 TTTGCACTTCGATGCCCCTG
86779924 TTATGCA
1 TT-TGCA
86779931 TCTGTGATGC
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
20 38 0.90
21 4 0.10
ACGTcount: A:0.10, C:0.33, G:0.21, T:0.36
Consensus pattern (20 bp):
TTTGCACTTCGATGCCCCTG
Found at i:86788178 original size:47 final size:46
Alignment explanation
Indices: 86788106--86788464 Score: 183
Period size: 47 Copynumber: 7.6 Consensus size: 46
86788096 TTATTTGTGT
*
86788106 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGACACATTATGAGA
1 GCCAGTGTAAGACCATGTCTGAGACATGGCATC-G-CACATTATGAGA
*
86788152 GCCAGTGTAAGACCATGTCTGAGACATGGCATCG-ACATTGAGACGAGA
1 GCCAGTGTAAGACCATGTCTGAGACATGGCATCGCACATT---ATGAGA
* * * *
86788200 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGA-GATGTA-A
1 GCCAGTGTAAGACCATGTCTGAGACATGGCATC-G-CAC-ATTATG-AGA
* *
86788246 GCCAATATAAGA-CATGTCT-AGGACATGGCATCGGCACA-TAT-AGA
1 GCCAGTGTAAGACCATGTCTGA-GACATGGCATC-GCACATTATGAGA
* * *
86788290 GGTTCAGTGTAAGACTATGTCT-AGGACATGACATCGGCACGGA-TATGTAAGA
1 -G-CCAGTGTAAGACCATGTCTGA-GACATGGCATC-GCAC--ATTATG--AGA
* * * *
86788342 GCTAGTGTAAGACCATGTCTGAGACATGGCGTCAGCCTCTATT-TCGATA
1 GCCAGTGTAAGACCATGTCTGAGACATGGCATC-G-CAC-ATTAT-GAGA
* * *
86788391 GTCAGTGTAAGAACATGTCTGGGACATGGCATCG-AC-TTGATGGATGA
1 GCCAGTGTAAGACCATGTCTGAGACATGGCATCGCACATT-AT-GA-GA
* * *
86788438 ACCAGTGTAAAACCATGTCTGGGACAT
1 GCCAGTGTAAGACCATGTCTGAGACAT
86788465 AACATCGGTA
Statistics
Matches: 246, Mismatches: 39, Indels: 55
0.72 0.11 0.16
Matches are distributed among these distances:
43 1 0.00
44 3 0.01
45 9 0.04
46 55 0.22
47 83 0.34
48 22 0.09
49 35 0.14
50 29 0.12
51 6 0.02
52 3 0.01
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.23
Consensus pattern (46 bp):
GCCAGTGTAAGACCATGTCTGAGACATGGCATCGCACATTATGAGA
Found at i:86791670 original size:19 final size:19
Alignment explanation
Indices: 86791617--86791666 Score: 68
Period size: 18 Copynumber: 2.7 Consensus size: 19
86791607 GATAACATAC
*
86791617 AACATGGGTTCGCAT-AAT
1 AACATGGGTTTGCATAAAT
*
86791635 AACATGAGTTTGCATAAAT
1 AACATGGGTTTGCATAAAT
86791654 -ACATGGGTTTGCA
1 AACATGGGTTTGCA
86791667 ATAAGAAGTG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
18 25 0.89
19 3 0.11
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.30
Consensus pattern (19 bp):
AACATGGGTTTGCATAAAT
Found at i:86795350 original size:11 final size:11
Alignment explanation
Indices: 86795334--86795392 Score: 52
Period size: 11 Copynumber: 5.5 Consensus size: 11
86795324 TTATATTTAC
86795334 TAATAAAATAA
1 TAATAAAATAA
86795345 TAATAAAATAA
1 TAATAAAATAA
* *
86795356 TAA-AATATCA
1 TAATAAAATAA
86795366 TAA-AAAATCAA
1 TAATAAAAT-AA
* *
86795377 -ATTAAAATAT
1 TAATAAAATAA
86795387 TAATAA
1 TAATAA
86795393 CTAATATTTA
Statistics
Matches: 38, Mismatches: 7, Indels: 6
0.75 0.14 0.12
Matches are distributed among these distances:
10 14 0.37
11 24 0.63
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:86795661 original size:31 final size:30
Alignment explanation
Indices: 86795626--86795684 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 30
86795616 CACCCTTAAA
86795626 ATATTTACACTATT-AGCCCTTCAAATTTTTC
1 ATATTTACACT-TTAAGCCC-TCAAATTTTTC
* *
86795657 ATATTTATACTTTAATCCCTCAAATTTT
1 ATATTTACACTTTAAGCCCTCAAATTTT
86795685 AAGTATTTGC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 11 0.44
31 14 0.56
ACGTcount: A:0.31, C:0.20, G:0.02, T:0.47
Consensus pattern (30 bp):
ATATTTACACTTTAAGCCCTCAAATTTTTC
Found at i:86796410 original size:20 final size:20
Alignment explanation
Indices: 86796385--86796427 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
86796375 CGACAATGAA
*
86796385 AGAGAATGAAAATTGAATGT
1 AGAGAACGAAAATTGAATGT
86796405 AGAGAACGAAAATTGAATGT
1 AGAGAACGAAAATTGAATGT
86796425 AGA
1 AGA
86796428 CTGCGGAAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.51, C:0.02, G:0.26, T:0.21
Consensus pattern (20 bp):
AGAGAACGAAAATTGAATGT
Found at i:86798535 original size:24 final size:24
Alignment explanation
Indices: 86798508--86798566 Score: 91
Period size: 24 Copynumber: 2.5 Consensus size: 24
86798498 ATATTTTTTT
**
86798508 GTCCATTTTGAACTTTACAACTAG
1 GTCCATTTTGAACTAGACAACTAG
*
86798532 GTCCATTTTGAACTAGATAACTAG
1 GTCCATTTTGAACTAGACAACTAG
86798556 GTCCATTTTGA
1 GTCCATTTTGA
86798567 TTCTTAAACT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.37
Consensus pattern (24 bp):
GTCCATTTTGAACTAGACAACTAG
Done.