Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 252 of 295
Found at i:86801057 original size:15 final size:15
Alignment explanation
Indices: 86801037--86801088 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
86801027 ACTACAAAAA
86801037 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
86801052 ATTTATAAGTGTAATAAAT
1 ATTTATTA-T-TAAT--AT
*
86801071 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
86801086 ATT
1 ATT
86801089 AATATTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:86802869 original size:21 final size:20
Alignment explanation
Indices: 86802836--86802877 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 20
86802826 TAAATAAAAC
86802836 AAAAGAAATAAAGAAA-AGA
1 AAAAGAAATAAAGAAACAGA
86802855 AAAAGAGAATGAAAGAAACAGA
1 AAAAGA-AAT-AAAGAAACAGA
86802877 A
1 A
86802878 TGTTTAAACG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 6 0.30
20 3 0.15
21 7 0.35
22 4 0.20
ACGTcount: A:0.74, C:0.02, G:0.19, T:0.05
Consensus pattern (20 bp):
AAAAGAAATAAAGAAACAGA
Found at i:86803926 original size:6 final size:6
Alignment explanation
Indices: 86803915--86803946 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
86803905 TCTGTACTTG
*
86803915 ACTGTT ACTGTT ACTGCT ACTGTT ACTGTT AC
1 ACTGTT ACTGTT ACTGTT ACTGTT ACTGTT AC
86803947 CATTACGGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.19, C:0.22, G:0.16, T:0.44
Consensus pattern (6 bp):
ACTGTT
Found at i:86809075 original size:127 final size:127
Alignment explanation
Indices: 86808918--86809172 Score: 501
Period size: 127 Copynumber: 2.0 Consensus size: 127
86808908 ATGGGTGTTC
86808918 ACTTTCCCATGCCCTCTCCAGACAAAGGTCTTTTCGTTTGCATTTAGTTAAGTTCATAGTTTCAA
1 ACTTTCCCATGCCCTCTCCAGACAAAGGTCTTTTCGTTTGCATTTAGTTAAGTTCATAGTTTCAA
86808983 TGTGGCTCACATGCACAGGCACAAACTCACTATGTTTATACATATTTTTCTTCTTTATGATT
66 TGTGGCTCACATGCACAGGCACAAACTCACTATGTTTATACATATTTTTCTTCTTTATGATT
86809045 ACTTTCCCATGCCCTCTCCAGACAAAGGTCTTTTCGTTTGCATTTAGTTAAGTTCATAGTTTCAA
1 ACTTTCCCATGCCCTCTCCAGACAAAGGTCTTTTCGTTTGCATTTAGTTAAGTTCATAGTTTCAA
*
86809110 TGTGGCTCACATGCACAGGCACAAACTTACTATGTTTATACATATTTTTCTTCTTTATGATT
66 TGTGGCTCACATGCACAGGCACAAACTCACTATGTTTATACATATTTTTCTTCTTTATGATT
86809172 A
1 A
86809173 AACTGGTTTC
Statistics
Matches: 127, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
127 127 1.00
ACGTcount: A:0.25, C:0.22, G:0.13, T:0.40
Consensus pattern (127 bp):
ACTTTCCCATGCCCTCTCCAGACAAAGGTCTTTTCGTTTGCATTTAGTTAAGTTCATAGTTTCAA
TGTGGCTCACATGCACAGGCACAAACTCACTATGTTTATACATATTTTTCTTCTTTATGATT
Found at i:86813768 original size:32 final size:29
Alignment explanation
Indices: 86813694--86813775 Score: 94
Period size: 29 Copynumber: 2.7 Consensus size: 29
86813684 AGGTGTTCTA
86813694 AAAGGTCAATAAATTTAGAACTTTTGTAC
1 AAAGGTCAATAAATTTAGAACTTTTGTAC
***
86813723 ATTTGTCAATAAATTTAGAACTTCATT-TAGTC
1 AAAGGTCAATAAATTTAGAACTT--TTGTA--C
86813755 AAAGGTCAATAAATTTAGAAC
1 AAAGGTCAATAAATTTAGAAC
86813776 CTGAGTTGGT
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
29 20 0.47
30 2 0.05
31 2 0.05
32 19 0.44
ACGTcount: A:0.41, C:0.11, G:0.12, T:0.35
Consensus pattern (29 bp):
AAAGGTCAATAAATTTAGAACTTTTGTAC
Found at i:86816606 original size:106 final size:106
Alignment explanation
Indices: 86816421--86816632 Score: 352
Period size: 106 Copynumber: 2.0 Consensus size: 106
86816411 ATCACATTTG
* * * *
86816421 CCATTGCATGATTTTATATGATTCTTGGTTGTCGTTTTTCTATTTGTTGTTCTTAGCCCTTGCAT
1 CCATTGCATGATTTTAAATGATTCTTGCTTGTCATTTTTCTATTTGTTGTTCTTACCCCTTGCAT
* * *
86816486 TCCAGGAAGATGAACCGTTGCCACTAACTTGCAGGTTGCAA
66 TCCAGGAAGATGAACCATTGCCACGAACTTGCAGGTCGCAA
*
86816527 CCATTGCATGATTTTAAATTATTCTTGCTTGTCATTTTTCTATTTGTTGTTCTTACCCCTTGCAT
1 CCATTGCATGATTTTAAATGATTCTTGCTTGTCATTTTTCTATTTGTTGTTCTTACCCCTTGCAT
86816592 TCCAGGAAGATGAACCATTGCCACGAACTTGCAGGTCGCAA
66 TCCAGGAAGATGAACCATTGCCACGAACTTGCAGGTCGCAA
86816633 ATTACGCATG
Statistics
Matches: 98, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
106 98 1.00
ACGTcount: A:0.21, C:0.21, G:0.18, T:0.40
Consensus pattern (106 bp):
CCATTGCATGATTTTAAATGATTCTTGCTTGTCATTTTTCTATTTGTTGTTCTTACCCCTTGCAT
TCCAGGAAGATGAACCATTGCCACGAACTTGCAGGTCGCAA
Found at i:86816771 original size:62 final size:62
Alignment explanation
Indices: 86816695--86816823 Score: 258
Period size: 62 Copynumber: 2.1 Consensus size: 62
86816685 TACATCACCA
86816695 ATTATATGATTCAAGATGAAGAAACTTCAAGCTATAATTTTGTTTATGATGTAAGAGAGATG
1 ATTATATGATTCAAGATGAAGAAACTTCAAGCTATAATTTTGTTTATGATGTAAGAGAGATG
86816757 ATTATATGATTCAAGATGAAGAAACTTCAAGCTATAATTTTGTTTATGATGTAAGAGAGATG
1 ATTATATGATTCAAGATGAAGAAACTTCAAGCTATAATTTTGTTTATGATGTAAGAGAGATG
86816819 ATTAT
1 ATTAT
86816824 TTGTGTATGT
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 67 1.00
ACGTcount: A:0.39, C:0.06, G:0.19, T:0.36
Consensus pattern (62 bp):
ATTATATGATTCAAGATGAAGAAACTTCAAGCTATAATTTTGTTTATGATGTAAGAGAGATG
Found at i:86817813 original size:18 final size:19
Alignment explanation
Indices: 86817780--86817816 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
86817770 AAAATATTTT
*
86817780 TAAAATTATTAAAAAAATA
1 TAAAATTATCAAAAAAATA
86817799 TAAAATTA-CAAAAAAATA
1 TAAAATTATCAAAAAAATA
86817817 AATTTTAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (19 bp):
TAAAATTATCAAAAAAATA
Found at i:86834040 original size:43 final size:42
Alignment explanation
Indices: 86833974--86834091 Score: 150
Period size: 43 Copynumber: 2.8 Consensus size: 42
86833964 AGCTCGTACA
86833974 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATTAAATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATTAAATAT-G
***
86834017 ATGCC-ACTGTCCCAGACAG-GGTCTTACACAAAATTAAATATG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACATGTAATTAAATATG
* *
86834059 ATGCCAACGTCCCAGATGTGGTCTTACTTGTAA
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAA
86834092 ATCATAAATG
Statistics
Matches: 63, Mismatches: 8, Indels: 9
0.79 0.10 0.11
Matches are distributed among these distances:
41 1 0.02
42 26 0.41
43 35 0.56
44 1 0.02
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.27
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGTAATTAAATATG
Found at i:86855821 original size:20 final size:19
Alignment explanation
Indices: 86855775--86855812 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
86855765 CAAAAAAGTC
86855775 TTCATTTTTCTCATACTATT
1 TTCATTTTTCTCATA-TATT
86855795 TTCATTTTTCTCAT-TATT
1 TTCATTTTTCTCATATATT
86855813 CTATCATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 4 0.22
20 14 0.78
ACGTcount: A:0.18, C:0.18, G:0.00, T:0.63
Consensus pattern (19 bp):
TTCATTTTTCTCATATATT
Found at i:86866920 original size:16 final size:16
Alignment explanation
Indices: 86866899--86866932 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
86866889 GGCTAAGTCA
86866899 GTACGCAACTGAATGG
1 GTACGCAACTGAATGG
86866915 GTACGCAACTGAATGG
1 GTACGCAACTGAATGG
86866931 GT
1 GT
86866933 CCAAACTGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.29, C:0.18, G:0.32, T:0.21
Consensus pattern (16 bp):
GTACGCAACTGAATGG
Found at i:86868325 original size:104 final size:104
Alignment explanation
Indices: 86868145--86868368 Score: 360
Period size: 104 Copynumber: 2.2 Consensus size: 104
86868135 TGTATATAAA
** * * *
86868145 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGTTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
86868210 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* * *
86868249 AGGGGTTGCTAAGTGTTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCG-TGATCCACCATATCT
86868313 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
86868353 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
86868369 GATATCCATT
Statistics
Matches: 110, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
104 109 0.99
105 1 0.01
ACGTcount: A:0.18, C:0.18, G:0.32, T:0.32
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:86868420 original size:71 final size:72
Alignment explanation
Indices: 86868287--86868438 Score: 252
Period size: 71 Copynumber: 2.1 Consensus size: 72
86868277 TCATTGGTGG
* *
86868287 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
86868352 GAGGGGT
66 GAGGGGT
***
86868359 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
86868423 GAGGGGT
66 GAGGGGT
86868430 TGCTAAGTG
1 TGCTAAGTG
86868439 ATGATTCCCC
Statistics
Matches: 75, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
71 45 0.60
72 30 0.40
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (72 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
GAGGGGT
Found at i:86876213 original size:68 final size:67
Alignment explanation
Indices: 86876141--86876317 Score: 164
Period size: 67 Copynumber: 2.6 Consensus size: 67
86876131 CATCATGTGT
* * * *
86876141 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCTCATGGGT-GATAC-TATG-CGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACATATGAAGGACACC
86876203 ATGTAG
62 ATGTAG
* * * * *
86876209 ACAAGAGAGATACGAGATATATGTAGCTAGGTCGCATGCGTGGCTCCATGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACATATGAAGGACACCATGT
86876274 AG
66 AG
* * * * *
86876276 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATGGGTGG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGG
86876318 TACTGAGTGT
Statistics
Matches: 92, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
64 19 0.21
65 6 0.07
66 23 0.25
67 32 0.35
68 12 0.13
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACATATGAAGGACACCATGT
AG
Found at i:86888273 original size:28 final size:28
Alignment explanation
Indices: 86888233--86888295 Score: 117
Period size: 28 Copynumber: 2.2 Consensus size: 28
86888223 TTTCTAAGGT
86888233 GAAATTTCGATTAGGCTTGGAATAGGGA
1 GAAATTTCGATTAGGCTTGGAATAGGGA
86888261 GAAATTTCGATTAGGCTTGGAATAGGGA
1 GAAATTTCGATTAGGCTTGGAATAGGGA
86888289 GTAAATT
1 G-AAATT
86888296 GCATAAATTT
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
28 29 0.85
29 5 0.15
ACGTcount: A:0.33, C:0.06, G:0.30, T:0.30
Consensus pattern (28 bp):
GAAATTTCGATTAGGCTTGGAATAGGGA
Found at i:86888808 original size:22 final size:21
Alignment explanation
Indices: 86888769--86888809 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
86888759 GCTTGATAAT
**
86888769 GTTTGAAAAATGTTAAATCCC
1 GTTTGAAAAATGAAAAATCCC
86888790 GTTTGAATAAATGAAAAATC
1 GTTTGAA-AAATGAAAAATC
86888810 GATGGATATG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 7 0.41
22 10 0.59
ACGTcount: A:0.44, C:0.10, G:0.15, T:0.32
Consensus pattern (21 bp):
GTTTGAAAAATGAAAAATCCC
Found at i:86895191 original size:13 final size:13
Alignment explanation
Indices: 86895182--86895206 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
86895172 TCGTTCTCTT
86895182 TTTCTTTTCTTTA
1 TTTCTTTTCTTTA
86895195 TTTCTTTTCTTT
1 TTTCTTTTCTTT
86895207 TCTTTTCTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.04, C:0.16, G:0.00, T:0.80
Consensus pattern (13 bp):
TTTCTTTTCTTTA
Found at i:86895467 original size:138 final size:135
Alignment explanation
Indices: 86895233--86895482 Score: 308
Period size: 137 Copynumber: 1.8 Consensus size: 135
86895223 CTATTATGTT
* *
86895233 TTAATTAAATTATAATATAATATTATTCTTAAATAATAAGTAAGTATACATGTATATTACAAACG
1 TTAATTAAATTATAAAATAATAATATTCTTAAATAATAAGTAAGTATACATG-ATATTACAAACG
* *
86895298 TATATATATCATTGGTACACATATAAATTATTATTACCACACACTTGTCTTTATTTAATTATTTA
65 TATATAAATCATTAGTACACATATAAATTATTATTACCACACACTTGTCTTTATTTAATTATTTA
86895363 CTTTAA
130 CTTTAA
*
86895369 TTAATT-AATTATAAAATAATAATATTTACTTAAATAATAAGTAATTACATACATG-TATTACAA
1 TTAATTAAATTATAAAATAATAATA-TT-CTTAAATAATAAGTAAGT--ATACATGATATTACAA
* * * ** * *
86895432 ATGTATGTACAAT-ATTTATTACACATATATTTTATTTTTATCACACACTTG
62 ACGTATATA-AATCA-TTAGTACACATATAAATTATTATTACCACACACTTG
86895483 GCATTCACTT
Statistics
Matches: 96, Mismatches: 12, Indels: 10
0.81 0.10 0.08
Matches are distributed among these distances:
135 16 0.17
136 8 0.08
137 33 0.34
138 32 0.33
139 7 0.07
ACGTcount: A:0.42, C:0.10, G:0.05, T:0.43
Consensus pattern (135 bp):
TTAATTAAATTATAAAATAATAATATTCTTAAATAATAAGTAAGTATACATGATATTACAAACGT
ATATAAATCATTAGTACACATATAAATTATTATTACCACACACTTGTCTTTATTTAATTATTTAC
TTTAA
Found at i:86899299 original size:22 final size:23
Alignment explanation
Indices: 86899271--86899339 Score: 61
Period size: 26 Copynumber: 2.8 Consensus size: 23
86899261 ATAAGATATG
86899271 TATATAAATAATAATATAAAT-A
1 TATATAAATAATAATATAAATAA
86899293 TATATAATGTATAATACATA-AAATAA
1 TATATAA---ATAATA-ATATAAATAA
86899319 TATATGAAAAGTAATAATATA
1 TATAT--AAA-TAATAATATA
86899340 GAAAAAAAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 14
0.73 0.00 0.27
Matches are distributed among these distances:
22 7 0.18
25 14 0.37
26 15 0.39
28 2 0.05
ACGTcount: A:0.59, C:0.01, G:0.04, T:0.35
Consensus pattern (23 bp):
TATATAAATAATAATATAAATAA
Found at i:86900684 original size:25 final size:25
Alignment explanation
Indices: 86900651--86900709 Score: 102
Period size: 25 Copynumber: 2.4 Consensus size: 25
86900641 CTTCATGAGT
86900651 TTTGGGTCTTGTAAGGGTTT-TTGGG
1 TTTGGGTCTTGTAA-GGTTTATTGGG
86900676 TTTGGGTCTTGTAAGGTTTATTGGG
1 TTTGGGTCTTGTAAGGTTTATTGGG
86900701 TTTGGGTCT
1 TTTGGGTCT
86900710 GCTGTAGGTT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
24 5 0.15
25 28 0.85
ACGTcount: A:0.08, C:0.05, G:0.37, T:0.49
Consensus pattern (25 bp):
TTTGGGTCTTGTAAGGTTTATTGGG
Found at i:86901513 original size:132 final size:132
Alignment explanation
Indices: 86901274--86902012 Score: 1151
Period size: 132 Copynumber: 5.6 Consensus size: 132
86901264 ATCTGTTATG
* * * *
86901274 TCTTCAATTTGTTCCCTATAAACAC-GAGGATGCCAAATCTACTATCTTCAACTTGTTCCCTATA
1 TCTTCGATCTGTTCCCTATAAACACAG-GGATGCCAAATCTGCTATCTTCAACTTGTTCCCAATA
* * * * * * ** *
86901338 AACACAGGGATGTCATGTTAAAATCTTTGATCTGTTTCGCTGTAAGCACAGGAACGCCAGATCTG
65 AACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAGTGTCAGATCTG
86901403 CTA
130 CTA
*
86901406 TCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTTCTAT-TCTCAACTTGTTCCCAATA
1 TCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCT-TCAACTTGTTCCCAATA
* *
86901470 AACACAGGGATGCCATGCTGAAATCTTCGATCTGTTTTACTGTAAGCACAGGAGTGTCAGATCTG
65 AACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAGTGTCAGATCTG
86901535 CTA
130 CTA
86901538 TCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCAATAA
1 TCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCAATAA
* * *
86901603 ACATAGGGATGCCATGTTGAAATCTTCGATCTGCTTCACTGTAAGCACATGAGTGTCAGATCTGC
66 ACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAGTGTCAGATCTGC
86901668 TA
131 TA
*
86901670 TCTTCGATCTGTTCCCTATAACCACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCAATAA
1 TCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCAATAA
* * * *
86901735 ACACAGAGATGCCATTCTAAAATCTTTGATCTGCTTCACTGTAAGCACAGGAGTGTCAGATCTGC
66 ACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAGTGTCAGATCTGC
86901800 TA
131 TA
86901802 TCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTAT-TCTCAACTTGTTCCCAATA
1 TCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCT-TCAACTTGTTCCCAATA
* * * * *
86901866 AACACAGGGATACCATGCTGAAATCTTCAATTTGCTTCGCTGTAAGAACAGGAGTGTCAGATCTG
65 AACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAGTGTCAGATCTG
86901931 CTA
130 CTA
* *
86901934 TCTTTGATCTGTTCCCTATAAACACAGGGATGCCAAATTTGCTATCTTCAACTTGTTCCCAATAA
1 TCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCAATAA
86901999 ACACAGGGATGCCA
66 ACACAGGGATGCCA
86902013 AATCTTTTTT
Statistics
Matches: 562, Mismatches: 40, Indels: 10
0.92 0.07 0.02
Matches are distributed among these distances:
131 2 0.00
132 557 0.99
133 3 0.01
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (132 bp):
TCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCAATAA
ACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAGTGTCAGATCTGC
TA
Found at i:86908761 original size:39 final size:40
Alignment explanation
Indices: 86908661--86908845 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
86908651 TTGAATGATG
* * *
86908661 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* * *
86908700 ATCCAGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
*
86908741 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
86908780 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
86908819 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
86908846 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
39 36 0.29
40 78 0.63
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:86908801 original size:79 final size:81
Alignment explanation
Indices: 86908661--86908845 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
86908651 TTGAATGATG
*
86908661 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCAGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCAGACTAAGATCCGAAGGCATT
86908725 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * * **
86908740 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCAGACTAAGAT-CCGAAGGCA
*
86908802 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
86908820 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
86908846 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCAGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:86908867 original size:79 final size:79
Alignment explanation
Indices: 86908714--86908878 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
86908704 AGACTAAGAT
* **
86908714 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
86908779 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
86908793 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
86908856 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
86908872 CCGAAGG
1 CCGAAGG
86908879 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:86932382 original size:39 final size:38
Alignment explanation
Indices: 86932318--86932422 Score: 106
Period size: 39 Copynumber: 2.7 Consensus size: 38
86932308 ATAGCTCCTC
*
86932318 TTCAAGTGCCTTCGGGAC-TAGCCCGGTCATAGT-AACTCA
1 TTCAA-TGCCTTCGGGACTTAACCCGG--ATAGTAAACTCA
** *
86932357 TTCAATGCCTTCGGGACTTAACCCGGATTTTAAACTCG
1 TTCAATGCCTTCGGGACTTAACCCGGATAGTAAACTCA
**
86932395 CACGAATGCCTTCGGGACTTAACCCGGA
1 TTC-AATGCCTTCGGGACTTAACCCGGA
86932423 ATTAGTATCT
Statistics
Matches: 57, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
37 3 0.05
38 18 0.32
39 36 0.63
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.26
Consensus pattern (38 bp):
TTCAATGCCTTCGGGACTTAACCCGGATAGTAAACTCA
Found at i:86932446 original size:40 final size:39
Alignment explanation
Indices: 86932363--86932449 Score: 113
Period size: 40 Copynumber: 2.2 Consensus size: 39
86932353 CTCATTCAAT
* * *
86932363 GCCTTCGGGACTTAACCCGGATTTTAAACTCGCACGAAT
1 GCCTTCGGGACTTAACCCGGATTGTAAACTCGCACAAAG
*
86932402 GCCTTCGGGACTTAACCCGGAATTAGT-ATCTCGCACAAAG
1 GCCTTCGGGACTTAACCCGG-ATT-GTAAACTCGCACAAAG
86932442 GCCTTCGG
1 GCCTTCGG
86932450 ATCTTAGTCC
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
39 20 0.48
40 21 0.50
41 1 0.02
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24
Consensus pattern (39 bp):
GCCTTCGGGACTTAACCCGGATTGTAAACTCGCACAAAG
Found at i:86940239 original size:40 final size:40
Alignment explanation
Indices: 86940163--86940306 Score: 125
Period size: 40 Copynumber: 3.6 Consensus size: 40
86940153 TAACTCATTC
* *
86940163 AATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACA
* *
86940203 AATGCCTTCGGGACTTAACCCGGA-ATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATATTA-AAACTCGCACA
* ** ** *
86940243 AAGGCCTTC-GGATCTTAGTCCGGATA-TAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGATATTA-AAAC-TCGCACA
*
86940284 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
86940307 CAGCATTCAA
Statistics
Matches: 88, Mismatches: 11, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
39 6 0.07
40 70 0.80
41 12 0.14
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACA
Found at i:86942286 original size:29 final size:29
Alignment explanation
Indices: 86942243--86942307 Score: 89
Period size: 29 Copynumber: 2.2 Consensus size: 29
86942233 TATGTATATA
*
86942243 AATAATAATATAAATATATATATAAAATGT
1 AATAATAATATAAATA-ATATATAAAAAGT
86942273 -ATAATACATA-AAATAATATATAAAAAGT
1 AATAATA-ATATAAATAATATATAAAAAGT
86942301 AATAATA
1 AATAATA
86942308 TAGAAAAAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
28 12 0.38
29 17 0.53
30 3 0.09
ACGTcount: A:0.63, C:0.02, G:0.03, T:0.32
Consensus pattern (29 bp):
AATAATAATATAAATAATATATAAAAAGT
Found at i:86942314 original size:29 final size:28
Alignment explanation
Indices: 86942237--86942318 Score: 82
Period size: 28 Copynumber: 3.0 Consensus size: 28
86942227 GTAAGATATG
* *
86942237 TATATAAA-TAATAATATAAATAT-ATA
1 TATAAAAAGTAATAATATAAAAATAATA
* *
86942263 TATAAAATGT-ATAATACATAAAATAATA
1 TATAAAAAGTAATAATATA-AAAATAATA
86942291 TATAAAAAGTAATAATATAGAAAA-AATA
1 TATAAAAAGTAATAATATA-AAAATAATA
86942319 AAACAATTTT
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
26 13 0.29
27 5 0.11
28 16 0.36
29 11 0.24
ACGTcount: A:0.63, C:0.01, G:0.04, T:0.32
Consensus pattern (28 bp):
TATAAAAAGTAATAATATAAAAATAATA
Found at i:86942494 original size:38 final size:38
Alignment explanation
Indices: 86942445--86942529 Score: 93
Period size: 37 Copynumber: 2.2 Consensus size: 38
86942435 AAAATATTGA
*
86942445 AAATAATAATAATAGTCTAAAAAGAAATAAAGTTAGAATA-
1 AAATAA-AATAACAGTC-AAAAAGAAATAAA-TTAGAATAG
* * *
86942485 AAA-AAAATAACATTCAAAAAGGATTAAATTAGAATAG
1 AAATAAAATAACAGTCAAAAAGAAATAAATTAGAATAG
86942522 AAATAAAA
1 AAATAAAA
86942530 ATACAGATGA
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
36 8 0.21
37 14 0.36
38 12 0.31
39 2 0.05
40 3 0.08
ACGTcount: A:0.65, C:0.04, G:0.09, T:0.22
Consensus pattern (38 bp):
AAATAAAATAACAGTCAAAAAGAAATAAATTAGAATAG
Found at i:86943653 original size:25 final size:25
Alignment explanation
Indices: 86943620--86943678 Score: 93
Period size: 25 Copynumber: 2.4 Consensus size: 25
86943610 CTTCATGAGT
*
86943620 TTTGGGTCTTGTAAAGGTTT-TTGGG
1 TTTGGGTCTTGT-AAGGTTTATTAGG
86943645 TTTGGGTCTTGTAAGGTTTATTAGG
1 TTTGGGTCTTGTAAGGTTTATTAGG
86943670 TTTGGGTCT
1 TTTGGGTCT
86943679 GCTGTAGGTT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 7 0.22
25 25 0.78
ACGTcount: A:0.12, C:0.05, G:0.34, T:0.49
Consensus pattern (25 bp):
TTTGGGTCTTGTAAGGTTTATTAGG
Found at i:86948800 original size:43 final size:43
Alignment explanation
Indices: 86948751--86948836 Score: 127
Period size: 43 Copynumber: 2.0 Consensus size: 43
86948741 AGGGTAAATG
* * * *
86948751 CAACAACCCATGTTTATCTTTTCCTCTTTTTAAATTCTTTTTT
1 CAACAACCCAAGATTATCTTCTCCTCTTTTTAAATTATTTTTT
*
86948794 CAACAACCCAAGATTATCTTCTCCTCTTTTTTAATTATTTTTT
1 CAACAACCCAAGATTATCTTCTCCTCTTTTTAAATTATTTTTT
86948837 TAGGATAAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.23, C:0.23, G:0.02, T:0.51
Consensus pattern (43 bp):
CAACAACCCAAGATTATCTTCTCCTCTTTTTAAATTATTTTTT
Found at i:86951088 original size:29 final size:29
Alignment explanation
Indices: 86951032--86951091 Score: 75
Period size: 29 Copynumber: 2.1 Consensus size: 29
86951022 TTTCTGAGCC
* *
86951032 TTAGGGCAAAAGTGTAAATATGTAAAAGT
1 TTAGGGAAAAAGTGTAAATATGCAAAAGT
* * *
86951061 TTAGGGAAAAAGTGTAATTTTGCCAAAGT
1 TTAGGGAAAAAGTGTAAATATGCAAAAGT
86951090 TT
1 TT
86951092 GAGTCAAGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.40, C:0.05, G:0.23, T:0.32
Consensus pattern (29 bp):
TTAGGGAAAAAGTGTAAATATGCAAAAGT
Found at i:86951610 original size:53 final size:53
Alignment explanation
Indices: 86951428--86951682 Score: 250
Period size: 55 Copynumber: 4.8 Consensus size: 53
86951418 ATTAGGGTTT
* * * * *
86951428 AAGGATACCGTGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGT
1 AAGGATACCATGTAAGACCATGTCAAGACATGGC-ATTGGTAA-GTTTATAAGGC
* * *
86951483 AAAGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTAACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGT--TTATAAGGC
* * * *
86951538 AAAGG-TCCCATGTAAGACCATGTCGAGGCATGGCATTGGTGAGTTTATAAGGC
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTTATAAGGC
* * *
86951591 AAGGATACCATGTAAGACCATGTCGAGACATGGCAATGGTAAGTTT-CAA---
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTTATAAGGC
* * * * *
86951640 AAGGATACCACGTAAGACCATGACAAGTCATGGAAATGGTAAG
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAG
86951683 GTACCTGTGT
Statistics
Matches: 171, Mismatches: 25, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
49 38 0.22
52 6 0.04
53 47 0.27
54 7 0.04
55 70 0.41
56 3 0.02
ACGTcount: A:0.36, C:0.16, G:0.26, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTTATAAGGC
Found at i:86951634 original size:108 final size:110
Alignment explanation
Indices: 86951438--86951634 Score: 299
Period size: 108 Copynumber: 1.8 Consensus size: 110
86951428 AAGGATACCG
* *
86951438 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGTAAAGATACCATGTAAGACCA
1 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTATAAGGCAAAGATACCATGTAAGACCA
*
86951503 TGTCAAGACATGGCATTGATAAGTAACTATAAGGCAAAGGTCCCA
66 TGTCAAGACATGGCAATGATAAGTAACTATAAGGCAAAGGTCCCA
* * * *
86951548 TGTAAGACCATGTCGAGGCATGGC-ATTGGTGA-GTTTATAAGGCAAGGATACCATGTAAGACCA
1 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTATAAGGCAAAGATACCATGTAAGACCA
* *
86951611 TGTCGAGACATGGCAATGGTAAGT
66 TGTCAAGACATGGCAATGATAAGT
86951635 TTCAAAAGGA
Statistics
Matches: 78, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
108 49 0.63
109 7 0.09
110 22 0.28
ACGTcount: A:0.34, C:0.16, G:0.26, T:0.23
Consensus pattern (110 bp):
TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTATAAGGCAAAGATACCATGTAAGACCA
TGTCAAGACATGGCAATGATAAGTAACTATAAGGCAAAGGTCCCA
Found at i:86951793 original size:23 final size:24
Alignment explanation
Indices: 86951756--86951803 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
86951746 AAGGTAAGGT
*
86951756 AAGGTAAGACGAGTT-ATACTAGA
1 AAGGTAAGACAAGTTCATACTAGA
* *
86951779 AAGGTATGACAAGTTCATGCTAGA
1 AAGGTAAGACAAGTTCATACTAGA
86951803 A
1 A
86951804 CAGTAAAAGT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 13 0.62
24 8 0.38
ACGTcount: A:0.42, C:0.10, G:0.25, T:0.23
Consensus pattern (24 bp):
AAGGTAAGACAAGTTCATACTAGA
Found at i:86951900 original size:16 final size:16
Alignment explanation
Indices: 86951879--86951909 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
86951869 ATAAATTTGA
86951879 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
86951895 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
86951910 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:86959129 original size:55 final size:53
Alignment explanation
Indices: 86959021--86959228 Score: 206
Period size: 55 Copynumber: 3.8 Consensus size: 53
86959011 ATTAGGGTTT
* **
86959021 AAGGATACCATGTAAGACCATG-CAAAGGCATGAAAATTGGTAAGGCTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGTC-AAGACATG-GCATTGGTAA-G-TTCATAAGGC
* *
86959076 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGAA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTT-C-ATAAGG-C
* * * * *
86959132 AAGG-TCCCATGTAAGACCAAGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCATAAGGC
* ** *
86959184 AAGGATACCATATAAGACCATGTTGAGACATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTT
86959229 TCAAAAGGAT
Statistics
Matches: 126, Mismatches: 21, Indels: 14
0.78 0.13 0.09
Matches are distributed among these distances:
52 6 0.05
53 39 0.31
54 8 0.06
55 68 0.54
56 5 0.04
ACGTcount: A:0.37, C:0.16, G:0.25, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCATAAGGC
Found at i:86959227 original size:108 final size:110
Alignment explanation
Indices: 86959028--86959228 Score: 282
Period size: 108 Copynumber: 1.8 Consensus size: 110
86959018 TTTAAGGATA
* *
86959028 CCATGTAAGACCATGCAAAGGCATGAAAATTGGTAAGGCTTCTAAGGCAAGGATACCATGTAAGA
1 CCATGTAAGACCAAGCAAAGGCATGAAAATTGGTAAGGCTTCTAAGGCAAGGATACCATATAAGA
*
86959093 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGAAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGAAAAGGTC
* ** *
86959138 CCATGTAAGACCAAGCCAAGGCATG-GCATTGGTGA-G-TTCATAAGGCAAGGATACCATATAAG
1 CCATGTAAGACCAAGCAAAGGCATGAAAATTGGTAAGGCTTC-TAAGGCAAGGATACCATATAAG
** *
86959200 ACCATGTTGAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
86959229 TCAAAAGGAT
Statistics
Matches: 80, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.59
109 7 0.09
110 23 0.29
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (110 bp):
CCATGTAAGACCAAGCAAAGGCATGAAAATTGGTAAGGCTTCTAAGGCAAGGATACCATATAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGAAAAGGTC
Found at i:86964549 original size:40 final size:40
Alignment explanation
Indices: 86964458--86964604 Score: 206
Period size: 40 Copynumber: 3.6 Consensus size: 40
86964448 GATATCTCGT
* **
86964458 ACACTAAGTGCCATTACATAGCCGAATCTAT-TTTAATCCCGC
1 ACACTAAGTGCCA-TACATAGCCGAAGCTATCTCGAAT--CGC
*
86964500 ACGCTAAGTGCCATACATAGCCGAAGCTATCTCGAATCGC
1 ACACTAAGTGCCATACATAGCCGAAGCTATCTCGAATCGC
*
86964540 ACACTAAGTGCCATACATAGCCAAAGCTATCTCGAATCGC
1 ACACTAAGTGCCATACATAGCCGAAGCTATCTCGAATCGC
*
86964580 ACACTAAGTGCCATATATAGCCGAA
1 ACACTAAGTGCCATACATAGCCGAA
86964605 CCATTGTCAA
Statistics
Matches: 96, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
40 64 0.67
41 16 0.17
42 16 0.17
ACGTcount: A:0.33, C:0.29, G:0.16, T:0.22
Consensus pattern (40 bp):
ACACTAAGTGCCATACATAGCCGAAGCTATCTCGAATCGC
Found at i:86965113 original size:21 final size:20
Alignment explanation
Indices: 86965089--86965128 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
86965079 ACTTGTTTAA
86965089 CTATCAACAAACATTCAAAAT
1 CTATCAACAAACA-TCAAAAT
* *
86965110 CTATCATCAATCATCAAAA
1 CTATCAACAAACATCAAAA
86965129 ATCATACATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (20 bp):
CTATCAACAAACATCAAAAT
Found at i:86966926 original size:59 final size:59
Alignment explanation
Indices: 86966834--86966953 Score: 222
Period size: 59 Copynumber: 2.0 Consensus size: 59
86966824 AATTGATCAA
*
86966834 GTAAATAACTAAGAATGATATGGTAAAGATACAATGACAAAAAATAAAGGATATATGAT
1 GTAAATAACTAAGAATGATATGGTAAAGATACAACGACAAAAAATAAAGGATATATGAT
*
86966893 GTAAATAACTAAGAATGATATGGTAAAGATACAACGACAAAGAATAAAGGATATATGAT
1 GTAAATAACTAAGAATGATATGGTAAAGATACAACGACAAAAAATAAAGGATATATGAT
86966952 GT
1 GT
86966954 TGATTTTGAA
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
59 59 1.00
ACGTcount: A:0.53, C:0.06, G:0.18, T:0.23
Consensus pattern (59 bp):
GTAAATAACTAAGAATGATATGGTAAAGATACAACGACAAAAAATAAAGGATATATGAT
Found at i:86967687 original size:40 final size:43
Alignment explanation
Indices: 86967642--86967725 Score: 111
Period size: 43 Copynumber: 2.0 Consensus size: 43
86967632 AGGGTAAATC
* * *
86967642 CAACAAACCATGTTTATC-T-TC-TCTTTTTAAATTCTTTTTT
1 CAACAAACCAAGGTTATCTTCTCTTCTTTTTAAATTCATTTTT
*
86967682 CAACAACCCAAGGTTATCTTCTCTTCTTTTTAAATTCATTTTT
1 CAACAAACCAAGGTTATCTTCTCTTCTTTTTAAATTCATTTTT
86967725 C
1 C
86967726 TAGGATAAAC
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
40 15 0.41
41 1 0.03
42 2 0.05
43 19 0.51
ACGTcount: A:0.25, C:0.23, G:0.04, T:0.49
Consensus pattern (43 bp):
CAACAAACCAAGGTTATCTTCTCTTCTTTTTAAATTCATTTTT
Found at i:86969791 original size:30 final size:30
Alignment explanation
Indices: 86969755--86969824 Score: 131
Period size: 30 Copynumber: 2.3 Consensus size: 30
86969745 TATGTGGTAG
*
86969755 CCGTGTGTCTCACACGGCCAAGTCACACTC
1 CCGTGTGTCTCACACGACCAAGTCACACTC
86969785 CCGTGTGTCTCACACGACCAAGTCACACTC
1 CCGTGTGTCTCACACGACCAAGTCACACTC
86969815 CCGTGTGTCT
1 CCGTGTGTCT
86969825 AGTCGTGTGG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.19, C:0.39, G:0.20, T:0.23
Consensus pattern (30 bp):
CCGTGTGTCTCACACGACCAAGTCACACTC
Found at i:86995040 original size:21 final size:21
Alignment explanation
Indices: 86995016--86995095 Score: 79
Period size: 21 Copynumber: 3.8 Consensus size: 21
86995006 GTCCCTGGTC
* *
86995016 CACATGGGCATGTGCCTTAGT
1 CACACGGGCATGTGCCTTAAT
* *
86995037 CACACGGCCATGTGCCTTACTT
1 CACACGGGCATGTGCCTTA-AT
* * *
86995059 CACATGGGCGTGTGCCTCAAT
1 CACACGGGCATGTGCCTTAAT
*
86995080 CACACGGGCGTGTGCC
1 CACACGGGCATGTGCC
86995096 CCTCCTCATT
Statistics
Matches: 49, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
21 33 0.67
22 16 0.33
ACGTcount: A:0.17, C:0.31, G:0.28, T:0.24
Consensus pattern (21 bp):
CACACGGGCATGTGCCTTAAT
Found at i:87003505 original size:153 final size:154
Alignment explanation
Indices: 87003227--87003534 Score: 537
Period size: 153 Copynumber: 2.0 Consensus size: 154
87003217 TGCTTTTAAA
*
87003227 AACAAGATTTTCTAAGGTTCATATATGTTCTGGCCATTGCAAATATCTCCTAGCTTACTCAGTTC
1 AACAAGATTTTCTAAGGTTCATATATGTCCTGGCCATTGCAAATATCTCCTAGCTTACTCAGTTC
*
87003292 ATTTATTACCCAAACTCAGGTCACTCCTGCTTTAAGCATACATGTACAAGCTTAATATTTTTTTA
66 ATTTATTACCCAAACTCAGGTCACTCCTACTTTAAGCATACATGTACAAGCTTAATATTTTTTTA
*
87003357 GATAAAATATATGTATATT-AGGG
131 AATAAAATATATGTATATTAAGGG
* *
87003380 AACAAGATTTTCTAAGGTTCATTTATGTCCTGGCCATTGCACATATCTCCTAGCTTACTCAGTTC
1 AACAAGATTTTCTAAGGTTCATATATGTCCTGGCCATTGCAAATATCTCCTAGCTTACTCAGTTC
* *
87003445 ATTTATTACCCAAACTCAGGTCACTCCTACTTTAAGCATACATGTACAATCTTACTATTTTTTTA
66 ATTTATTACCCAAACTCAGGTCACTCCTACTTTAAGCATACATGTACAAGCTTAATATTTTTTTA
*
87003510 AATAAATTATATGTATATTAAGGG
131 AATAAAATATATGTATATTAAGGG
87003534 A
1 A
87003535 TTAAACATGT
Statistics
Matches: 146, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
153 141 0.97
154 5 0.03
ACGTcount: A:0.31, C:0.19, G:0.12, T:0.38
Consensus pattern (154 bp):
AACAAGATTTTCTAAGGTTCATATATGTCCTGGCCATTGCAAATATCTCCTAGCTTACTCAGTTC
ATTTATTACCCAAACTCAGGTCACTCCTACTTTAAGCATACATGTACAAGCTTAATATTTTTTTA
AATAAAATATATGTATATTAAGGG
Found at i:87004308 original size:20 final size:20
Alignment explanation
Indices: 87004279--87004319 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
87004269 TTTTTACAAC
87004279 AAATGACATGGCAAAAGAAA
1 AAATGACATGGCAAAAGAAA
* *
87004299 AAATGCCATGGCACAAGAAA
1 AAATGACATGGCAAAAGAAA
87004319 A
1 A
87004320 TGATATGTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.56, C:0.15, G:0.20, T:0.10
Consensus pattern (20 bp):
AAATGACATGGCAAAAGAAA
Found at i:87004664 original size:24 final size:24
Alignment explanation
Indices: 87004632--87004685 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
87004622 CAACTAATGT
* *
87004632 TTGAGTAGGTGCCTCGGTAGTAGG
1 TTGAGTAGGTGCCTCAGTAGTAGC
* *
87004656 TTGAGTAGGTGCTTTAGTAGTAGC
1 TTGAGTAGGTGCCTCAGTAGTAGC
87004680 TTGAGT
1 TTGAGT
87004686 GGGCTCCTTG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.19, C:0.09, G:0.37, T:0.35
Consensus pattern (24 bp):
TTGAGTAGGTGCCTCAGTAGTAGC
Found at i:87006826 original size:5 final size:5
Alignment explanation
Indices: 87006813--87006864 Score: 52
Period size: 5 Copynumber: 10.0 Consensus size: 5
87006803 CAAATTTAAC
* *
87006813 AAAG- AAAGG AAAGG AAAGA AAAGA AAAGA AAAGAA AGAAGA AAAGA AGAAGA
1 AAAGA AAAGA AAAGA AAAGA AAAGA AAAGA AAAG-A A-AAGA AAAGA A-AAGA
87006865 TAGTCATGCA
Statistics
Matches: 43, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
4 4 0.09
5 28 0.65
6 8 0.19
7 3 0.07
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (5 bp):
AAAGA
Found at i:87006832 original size:14 final size:14
Alignment explanation
Indices: 87006813--87006864 Score: 54
Period size: 14 Copynumber: 3.7 Consensus size: 14
87006803 CAAATTTAAC
* *
87006813 AAAGAAAGGAAAGG
1 AAAGAAAAGAAAGA
87006827 AAAGAAAAGAAAAGA
1 AAAGAAAAG-AAAGA
87006842 AAAG-AAAG-AAGA
1 AAAGAAAAGAAAGA
87006854 AAAGAAGAAGA
1 AAAGAA-AAGA
87006865 TAGTCATGCA
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
12 8 0.25
13 1 0.03
14 15 0.47
15 8 0.25
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (14 bp):
AAAGAAAAGAAAGA
Found at i:87007086 original size:12 final size:12
Alignment explanation
Indices: 87007069--87007105 Score: 74
Period size: 12 Copynumber: 3.1 Consensus size: 12
87007059 AAAATAGGGC
87007069 TTTAGCGGCGTT
1 TTTAGCGGCGTT
87007081 TTTAGCGGCGTT
1 TTTAGCGGCGTT
87007093 TTTAGCGGCGTT
1 TTTAGCGGCGTT
87007105 T
1 T
87007106 ATCAAAAAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.08, C:0.16, G:0.32, T:0.43
Consensus pattern (12 bp):
TTTAGCGGCGTT
Found at i:87007205 original size:41 final size:40
Alignment explanation
Indices: 87007129--87007418 Score: 257
Period size: 41 Copynumber: 7.1 Consensus size: 40
87007119 GCAAAAATTA
* **
87007129 TAAAACACAGAGCAATAGCGGCG-TTTT-ACCAAAAACGTTGC
1 TAAAA-ACAGAGCAATAGCGGCGCTTTTGA--TAAAACGCCGC
* *
87007170 TAAAAATAGAGCAATAGCGGCGCTTTTTGTTAAAACGCCGC
1 TAAAAACAGAGCAATAGCGGCGC-TTTTGATAAAACGCCGC
* *
87007211 TAAAAACCAGAGCATTAGCGGCGCTTTCGATAAAACGCCGC
1 TAAAAA-CAGAGCAATAGCGGCGCTTTTGATAAAACGCCGC
* * *
87007252 TAAAAACCGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
1 TAAAAACAGAGCAATAGCGGCGCTTTTGATAAAACGCCGC
* * * * *
87007292 TAAAAACCAGAGCATTAACAGCACTTTCGATAAAACGCCGC
1 TAAAAA-CAGAGCAATAGCGGCGCTTTTGATAAAACGCCGC
* * * *
87007333 TAAAAACTAGAG-AATTAGCGGCCCTTTCGA-AAAAAGCCAC
1 TAAAAAC-AGAGCAA-TAGCGGCGCTTTTGATAAAACGCCGC
* * *
87007373 TAAAAACCAGAGCATTAGCGGCGC-TTTCAGTAAAACGCCGT
1 TAAAAA-CAGAGCAATAGCGGCGCTTTTGA-TAAAACGCCGC
87007414 TAAAA
1 TAAAA
87007419 GTCATATAAT
Statistics
Matches: 207, Mismatches: 31, Indels: 22
0.80 0.12 0.08
Matches are distributed among these distances:
39 3 0.01
40 81 0.39
41 104 0.50
42 19 0.09
ACGTcount: A:0.37, C:0.23, G:0.20, T:0.19
Consensus pattern (40 bp):
TAAAAACAGAGCAATAGCGGCGCTTTTGATAAAACGCCGC
Found at i:87007319 original size:81 final size:81
Alignment explanation
Indices: 87007130--87007418 Score: 341
Period size: 81 Copynumber: 3.5 Consensus size: 81
87007120 CAAAAATTAT
* * * ** * *
87007130 AAAACACAGAGCAATAGCGGCGTTTTACCA-AAAACGTTGCTAAAAATAGAGCAATAGCGGCGCT
1 AAAAC-CAGAGCATTAGCGGCGCTTT-CGATAAAACGCCGCTAAAAACAGAGCATTAGCGGCGC-
*
87007194 TTTTGTTAAAACGCCGCTA
63 TTTTGGTAAAACGCCGCTA
*
87007213 AAAACCAGAGCATTAGCGGCGCTTTCGATAAAACGCCGCTAAAAACCGAGCATTAGCGGCGCTTT
1 AAAACCAGAGCATTAGCGGCGCTTTCGATAAAACGCCGCTAAAAACAGAGCATTAGCGGCGCTTT
87007278 TGGTAAAACGCCGCTA
66 TGGTAAAACGCCGCTA
* * * * *
87007294 AAAACCAGAGCATTAACAGCACTTTCGATAAAACGCCGCTAAAAACTAGAGAATTAGCGGC-CCT
1 AAAACCAGAGCATTAGCGGCGCTTTCGATAAAACGCCGCTAAAAAC-AGAGCATTAGCGGCGCTT
* * * *
87007358 TTCGAAAAAAGCCACTA
65 TTGGTAAAACGCCGCTA
*
87007375 AAAACCAGAGCATTAGCGGCGCTTTC-AGTAAAACGCCGTTAAAA
1 AAAACCAGAGCATTAGCGGCGCTTTCGA-TAAAACGCCGCTAAAA
87007419 GTCATATAAT
Statistics
Matches: 180, Mismatches: 23, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
80 1 0.01
81 116 0.64
82 58 0.32
83 5 0.03
ACGTcount: A:0.37, C:0.24, G:0.20, T:0.19
Consensus pattern (81 bp):
AAAACCAGAGCATTAGCGGCGCTTTCGATAAAACGCCGCTAAAAACAGAGCATTAGCGGCGCTTT
TGGTAAAACGCCGCTA
Found at i:87011870 original size:11 final size:11
Alignment explanation
Indices: 87011854--87011884 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
87011844 TGCTTGGATG
87011854 TTGGTTTTGGT
1 TTGGTTTTGGT
87011865 TTGGTTTTGGT
1 TTGGTTTTGGT
*
87011876 TTAGTTTTG
1 TTGGTTTTG
87011885 TTCTTTTTCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.03, C:0.00, G:0.32, T:0.65
Consensus pattern (11 bp):
TTGGTTTTGGT
Found at i:87013063 original size:43 final size:43
Alignment explanation
Indices: 87012996--87013098 Score: 161
Period size: 43 Copynumber: 2.4 Consensus size: 43
87012986 ATATATATGG
* * * *
87012996 TCTTTAGTGGCGTTTTTGGGGAAAGCGCCGCTAAAGGTCATGA
1 TCTTTAGCGGCGTTTTTAGAGAAAGCGCCGCTAAAAGTCATGA
87013039 TCTTTAGCGGCGTTTTTAGAGAAAGCGCCGCTAAAAGTCATGA
1 TCTTTAGCGGCGTTTTTAGAGAAAGCGCCGCTAAAAGTCATGA
*
87013082 CCTTTAGCGGCGTTTTT
1 TCTTTAGCGGCGTTTTT
87013099 TCTCAAAAAA
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 55 1.00
ACGTcount: A:0.21, C:0.18, G:0.28, T:0.32
Consensus pattern (43 bp):
TCTTTAGCGGCGTTTTTAGAGAAAGCGCCGCTAAAAGTCATGA
Found at i:87014225 original size:43 final size:43
Alignment explanation
Indices: 87014177--87014262 Score: 138
Period size: 43 Copynumber: 2.0 Consensus size: 43
87014167 TATGCGATTG
87014177 ATATTGAAATGGAAAAAATGAGAAATGGA-TATGAGATGAGAAA
1 ATATTGAAATGGAAAAAATGAGAAAT-GATTATGAGATGAGAAA
* *
87014220 ATATTGAAATGGAAAATATGAGATATGATTATGAGATGAGAAA
1 ATATTGAAATGGAAAAAATGAGAAATGATTATGAGATGAGAAA
87014263 TGAAATATGA
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
42 2 0.05
43 38 0.95
ACGTcount: A:0.51, C:0.00, G:0.24, T:0.24
Consensus pattern (43 bp):
ATATTGAAATGGAAAAAATGAGAAATGATTATGAGATGAGAAA
Found at i:87019391 original size:138 final size:138
Alignment explanation
Indices: 87019143--87019420 Score: 475
Period size: 138 Copynumber: 2.0 Consensus size: 138
87019133 CTGTTTTTTG
*
87019143 AGACAAAATCAACATAAGCAATTGGAAAAATCCTACTTGAAGTAAGTCTAAACATACATAAAGAT
1 AGACAAAATCAACAAAAGCAATTGGAAAAATCCTACTTGAAGTAAGTCTAAACATACATAAAGAT
*
87019208 CAGCATCCATTTACAAGCTTTTTAACAGTATACAATAAAATCAAGCTTCTGCTAATAGAGAAAAC
66 CAGCATCCATTTACAAGCTTTTTAACAGTAAACAATAAAATCAAGCTTCTGCTAATAGAGAAAAC
*
87019273 ATTCTATA
131 ATCCTATA
* *
87019281 AGACAAAATCAACAAAAGCAATTGGAAAAATCCTACTTGAAGTACGTCTAAACATACTTAAAGAT
1 AGACAAAATCAACAAAAGCAATTGGAAAAATCCTACTTGAAGTAAGTCTAAACATACATAAAGAT
* * * *
87019346 CAGCATCCGTTTACAAGCTTTTTGACAGTAAACAATAAAATCAAGCTTCTGTTAATAGAGAAATC
66 CAGCATCCATTTACAAGCTTTTTAACAGTAAACAATAAAATCAAGCTTCTGCTAATAGAGAAAAC
87019411 ATCCTATA
131 ATCCTATA
87019419 AG
1 AG
87019421 CGACGTAATA
Statistics
Matches: 131, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
138 131 1.00
ACGTcount: A:0.45, C:0.18, G:0.12, T:0.26
Consensus pattern (138 bp):
AGACAAAATCAACAAAAGCAATTGGAAAAATCCTACTTGAAGTAAGTCTAAACATACATAAAGAT
CAGCATCCATTTACAAGCTTTTTAACAGTAAACAATAAAATCAAGCTTCTGCTAATAGAGAAAAC
ATCCTATA
Found at i:87028952 original size:38 final size:38
Alignment explanation
Indices: 87028909--87029048 Score: 201
Period size: 38 Copynumber: 3.7 Consensus size: 38
87028899 CTTAAAAACT
* *
87028909 CGCAGGCTTTATGCTGGAATTATATCCGGGTTAAATCC
1 CGCAGGCTTCATGCTGGTATTATATCCGGGTTAAATCC
* *
87028947 CGCAGGCTTCGTGCTGGTATTATATCCGGGTAAAATCC
1 CGCAGGCTTCATGCTGGTATTATATCCGGGTTAAATCC
* *
87028985 CGCAGGCTTCGTGCTGGTATTATATCCCGGTTAAATCC
1 CGCAGGCTTCATGCTGGTATTATATCCGGGTTAAATCC
*
87029023 CGCAGGCCT-AGTGCTGGTATTATATC
1 CGCAGGCTTCA-TGCTGGTATTATATC
87029049 TGAGTTTAAA
Statistics
Matches: 93, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
38 93 1.00
ACGTcount: A:0.21, C:0.24, G:0.25, T:0.31
Consensus pattern (38 bp):
CGCAGGCTTCATGCTGGTATTATATCCGGGTTAAATCC
Found at i:87030918 original size:58 final size:57
Alignment explanation
Indices: 87030845--87030955 Score: 134
Period size: 57 Copynumber: 1.9 Consensus size: 57
87030835 CGAATGATTA
* *
87030845 GAGGCACTATGTGTGCAAATTCTTTTAA-CTAAGCACTATGTGTGCGAAATCGGTAATT
1 GAGGCACTATATGTGCAAATTC-TTCAATC-AAGCACTATGTGTGCGAAATCGGTAATT
* * * * *
87030903 GAGGCACTGTATGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCGGT
1 GAGGCACTATATGTGCAAATTCTTCAATCAAGCACTATGTGTGCGAAATCGGT
87030956 CAGTGGGCAC
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
57 26 0.58
58 19 0.42
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (57 bp):
GAGGCACTATATGTGCAAATTCTTCAATCAAGCACTATGTGTGCGAAATCGGTAATT
Found at i:87030965 original size:28 final size:28
Alignment explanation
Indices: 87030877--87030973 Score: 81
Period size: 28 Copynumber: 3.4 Consensus size: 28
87030867 TTTTAACTAA
*
87030877 GCACTATGTGTGCGAAATCGGT-AATTGAG
1 GCACTATGTGTGCGAGATCGGTCAA-TG-G
* * * * *
87030906 GCACTGTATGTGCGAGTTC-TTCAATCGA
1 GCACTATGTGTGCGAGATCGGTCAAT-GG
*
87030934 GCACTATGTGTGCGAGATCGGTCAGTGG
1 GCACTATGTGTGCGAGATCGGTCAATGG
*
87030962 GCACTAAGTGTG
1 GCACTATGTGTG
87030974 TGAAATGAGA
Statistics
Matches: 52, Mismatches: 13, Indels: 7
0.72 0.18 0.10
Matches are distributed among these distances:
28 30 0.58
29 22 0.42
ACGTcount: A:0.23, C:0.18, G:0.32, T:0.28
Consensus pattern (28 bp):
GCACTATGTGTGCGAGATCGGTCAATGG
Found at i:87032800 original size:38 final size:38
Alignment explanation
Indices: 87032757--87032933 Score: 291
Period size: 38 Copynumber: 4.7 Consensus size: 38
87032747 CTTAAAAACT
** *
87032757 CGCAGGCTTTATGCTGGAATTATATCCGGGTTAAATCC
1 CGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCC
*
87032795 CGCAGGCTTCGTGCTGGTATTATATCCGGGTAAAATCC
1 CGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCC
*
87032833 CGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATTC
1 CGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCC
87032871 CGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCC
1 CGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCC
* *
87032909 CGCAGGCCTAGTGCTGGTATTATAT
1 CGCAGGCTTCGTGCTGGTATTATAT
87032934 GTAACACCCC
Statistics
Matches: 130, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 130 1.00
ACGTcount: A:0.20, C:0.22, G:0.26, T:0.32
Consensus pattern (38 bp):
CGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCC
Found at i:87034413 original size:40 final size:40
Alignment explanation
Indices: 87034308--87034453 Score: 181
Period size: 40 Copynumber: 3.6 Consensus size: 40
87034298 GCTACTCGTT
*
87034308 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
87034348 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
87034388 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
87034429 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
87034454 CATCATTCAA
Statistics
Matches: 93, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
39 3 0.03
40 77 0.83
41 13 0.14
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:87041732 original size:40 final size:39
Alignment explanation
Indices: 87041695--87041878 Score: 223
Period size: 40 Copynumber: 4.6 Consensus size: 39
87041685 GCTACTCGTT
*
87041695 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTA-CCCGGATT-TAGTAACTCGCA
87041735 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTT-ACCCGGATTTAGTAACTCGCA
87041775 CAAATGCCTTCGGGACTTACCCGGATTTAGT-ACTCGCA
1 CAAATGCCTTCGGGACTTACCCGGATTTAGTAACTCGCA
* * * * *
87041813 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTA-CCCGGATTTAGTAAC-TCGCA
87041854 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTA-CCCGGA
87041879 CATCATTCAA
Statistics
Matches: 131, Mismatches: 6, Indels: 14
0.87 0.04 0.09
Matches are distributed among these distances:
37 3 0.02
38 22 0.17
39 22 0.17
40 70 0.53
41 14 0.11
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTACCCGGATTTAGTAACTCGCA
Found at i:87041862 original size:78 final size:81
Alignment explanation
Indices: 87041695--87041878 Score: 245
Period size: 78 Copynumber: 2.3 Consensus size: 81
87041685 GCTACTCGTT
*
87041695 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* *
87041759 GATTTAGTAACTCGCA
66 GATATAGTAACTAGCA
**
87041775 CAAATGCCTTCGGGACTTA-CCCGGATT-TAGT-ACTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* *
87041836 GGATATGGTCACTTAGCA
65 GGATATAGTAAC-TAGCA
87041854 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
87041879 CATCATTCAA
Statistics
Matches: 93, Mismatches: 7, Indels: 9
0.85 0.06 0.08
Matches are distributed among these distances:
77 3 0.03
78 47 0.51
79 23 0.25
80 20 0.22
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
GATATAGTAACTAGCA
Found at i:87041871 original size:118 final size:119
Alignment explanation
Indices: 87041662--87041878 Score: 278
Period size: 118 Copynumber: 1.8 Consensus size: 119
87041652 AAATCACGTA
* ** *
87041662 CCTTCGGAATTTAACCGGATATAGCTACTCGTTCAAATGCCTTCGGGACATAGCCCGGTTATAGT
1 CCTTCGGAACTTAACCGGATATAGCTACTCGCACAAATGCCTTCGGGACATAGCCCGGATATAGT
*
87041727 AACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATG
66 AACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATG
* * * * * *
87041781 CCTTCGGGACTTACCCGGATTTAG-TACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGG
1 CCTTCGGAACTTAACCGGATATAGCTACTCGCACAAATGCCTTCGGGA-CATAGCCCGGATATAG
* *
87041844 TCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
65 TAAC-TAGCACAAATGCCTTCGGGACTTAACCCGGA
87041879 CATCATTCAA
Statistics
Matches: 83, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
117 3 0.04
118 52 0.63
119 28 0.34
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (119 bp):
CCTTCGGAACTTAACCGGATATAGCTACTCGCACAAATGCCTTCGGGACATAGCCCGGATATAGT
AACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATG
Found at i:87046753 original size:22 final size:21
Alignment explanation
Indices: 87046715--87046755 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
87046705 TACTAGATAC
*
87046715 AGGGGCACACACTCGTGTGGG
1 AGGGGCACACACCCGTGTGGG
87046736 AGGGGCAACACACCCGTGTG
1 AGGGGC-ACACACCCGTGTG
87046756 ACTAATTCGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.22, C:0.27, G:0.39, T:0.12
Consensus pattern (21 bp):
AGGGGCACACACCCGTGTGGG
Found at i:87051096 original size:68 final size:66
Alignment explanation
Indices: 87051024--87051195 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
87051014 CATCATGTGT
* * * *
87051024 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
87051087 TGTAG
62 TGTAG
** * *
87051092 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
87051157 AG
65 AG
* * * *
87051159 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
87051196 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:87051129 original size:64 final size:64
Alignment explanation
Indices: 87051048--87051231 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
87051038 AGACATTATG
* * *
87051048 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
87051112 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
87051177 AA
63 AA
* * *
87051179 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
87051232 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:87055563 original size:64 final size:64
Alignment explanation
Indices: 87055482--87055665 Score: 210
Period size: 67 Copynumber: 2.8 Consensus size: 64
87055472 AGACATTATG
* * *
87055482 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
87055546 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
87055611 AA
63 AA
* * * *
87055613 AT-TGGCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAGC
87055666 CGAACTATAT
Statistics
Matches: 99, Mismatches: 17, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 22 0.22
67 32 0.32
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:87063673 original size:41 final size:41
Alignment explanation
Indices: 87063628--87063712 Score: 170
Period size: 41 Copynumber: 2.1 Consensus size: 41
87063618 AATTGTAGAC
87063628 TAAGATAAACGTGCTACGATAGCAGACTAGATACACAATTT
1 TAAGATAAACGTGCTACGATAGCAGACTAGATACACAATTT
87063669 TAAGATAAACGTGCTACGATAGCAGACTAGATACACAATTT
1 TAAGATAAACGTGCTACGATAGCAGACTAGATACACAATTT
87063710 TAA
1 TAA
87063713 TTTTAAATGT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 44 1.00
ACGTcount: A:0.42, C:0.16, G:0.16, T:0.25
Consensus pattern (41 bp):
TAAGATAAACGTGCTACGATAGCAGACTAGATACACAATTT
Found at i:87064868 original size:27 final size:27
Alignment explanation
Indices: 87064784--87064876 Score: 107
Period size: 27 Copynumber: 3.4 Consensus size: 27
87064774 CAATTTGGAT
*
87064784 TAGTTGGGTGATAAA-AAAAAGGGCAA
1 TAGTTGGGTGACAAATAAAAAGGGCAA
*****
87064810 TAGTTGGGTGACCAAATTAAAAAAAATGA
1 TAGTTGGGTGA-CAAA-TAAAAAGGGCAA
87064839 TAGTTGGGTGACAAATAAAAAGGGCAA
1 TAGTTGGGTGACAAATAAAAAGGGCAA
87064866 TAGTTGGGTGA
1 TAGTTGGGTGA
87064877 TCTGTGGTAT
Statistics
Matches: 53, Mismatches: 11, Indels: 5
0.77 0.16 0.07
Matches are distributed among these distances:
26 11 0.21
27 21 0.40
28 4 0.08
29 17 0.32
ACGTcount: A:0.43, C:0.05, G:0.29, T:0.23
Consensus pattern (27 bp):
TAGTTGGGTGACAAATAAAAAGGGCAA
Found at i:87065167 original size:15 final size:15
Alignment explanation
Indices: 87065147--87065176 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
87065137 ACGAGATAAT
87065147 CATCCATTTATTAGG
1 CATCCATTTATTAGG
*
87065162 CATCCATTTTTTAGG
1 CATCCATTTATTAGG
87065177 TGTAAACACT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.20, G:0.13, T:0.43
Consensus pattern (15 bp):
CATCCATTTATTAGG
Found at i:87067550 original size:33 final size:33
Alignment explanation
Indices: 87067510--87067636 Score: 134
Period size: 33 Copynumber: 3.9 Consensus size: 33
87067500 ACTCTTTCTA
* *
87067510 TGTTTACTATCCCAG-TGAGTTATCTCTGTTTTG
1 TGTTTACTATCCCAGCTGA-CTATCTCTATTTTG
*
87067543 TTTTTACTATCCCAGCTGACTATCTCTATTTTG
1 TGTTTACTATCCCAGCTGACTATCTCTATTTTG
* * * *
87067576 TGTTTGCTATCCCAGCAGACTATCTCTGTTCTG
1 TGTTTACTATCCCAGCTGACTATCTCTATTTTG
* *
87067609 TGTTTAC-ATCCTA-ATAGACTATCTCTAT
1 TGTTTACTATCCCAGCT-GACTATCTCTAT
87067637 GGATGCCATG
Statistics
Matches: 79, Mismatches: 13, Indels: 5
0.81 0.13 0.05
Matches are distributed among these distances:
32 16 0.20
33 60 0.76
34 3 0.04
ACGTcount: A:0.19, C:0.23, G:0.13, T:0.45
Consensus pattern (33 bp):
TGTTTACTATCCCAGCTGACTATCTCTATTTTG
Found at i:87074076 original size:42 final size:41
Alignment explanation
Indices: 87074028--87074119 Score: 123
Period size: 42 Copynumber: 2.2 Consensus size: 41
87074018 TGGCACGAAG
* *
87074028 GCCCTTCGGAACTAAGTCCGGTTATGA-CACTGGCTCTAAAAA
1 GCCCTTCGAAACTAAGTCCAGTTATGAGCACTGGCTC--AAAA
* *
87074070 GCCCTTCGAAACTAAGTTCAGTTATTAGCACTGGCTCAAAA
1 GCCCTTCGAAACTAAGTCCAGTTATGAGCACTGGCTCAAAA
87074111 GCCCTTCGA
1 GCCCTTCGA
87074120 GACCAAGCTC
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
41 13 0.29
42 23 0.51
43 9 0.20
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (41 bp):
GCCCTTCGAAACTAAGTCCAGTTATGAGCACTGGCTCAAAA
Found at i:87074119 original size:41 final size:40
Alignment explanation
Indices: 87073970--87074119 Score: 124
Period size: 41 Copynumber: 3.6 Consensus size: 40
87073960 AGTCCGACTC
** * * * *
87073970 TTAGCACCAGCTCAAAAGCCCTTCGAGACCAAGCTCG-GA
1 TTAGCACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGTTA
* * * * *
87074009 TTAGACTACTGGCACGAAGGCCCTTCGGAACTAAGTCCGGTTA
1 TTAG-C-ACTGGCTCAAAAGCCCTTCGAAACTAAGTTC-GTTA
*
87074052 TGA-CACTGGCTCTAAAAAGCCCTTCGAAACTAAGTTCAGTTA
1 TTAGCACTGGCTC--AAAAGCCCTTCGAAACTAAGTTC-GTTA
87074094 TTAGCACTGGCTCAAAAGCCCTTCGA
1 TTAGCACTGGCTCAAAAGCCCTTCGA
87074120 GACCAAGCTC
Statistics
Matches: 85, Mismatches: 19, Indels: 12
0.73 0.16 0.10
Matches are distributed among these distances:
39 4 0.05
40 8 0.09
41 35 0.41
42 26 0.31
43 12 0.14
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (40 bp):
TTAGCACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGTTA
Found at i:87082356 original size:41 final size:40
Alignment explanation
Indices: 87082303--87082467 Score: 122
Period size: 41 Copynumber: 4.0 Consensus size: 40
87082293 AGTCCGACTC
*
87082303 TTAG-CACAGGCTCAAAAGCCCTTCCAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCCAGACCAAGCTCGGA
* * * * *
87082342 TTAGACTACTGGCTCGAAGGCCCTT-CGGAACTAAG-TCCGA
1 TTAGAC-ACTGGCTCAAAAGCCCTTCCAG-ACCAAGCTCGGA
* * * * *
87082382 TTATGACACTGGCTCTAAAAAGCCCTTCGAAACTAAGTTCAGTTA
1 TTA-GACACTGGCTC--AAAAGCCCTTCCAGACCAAGCTC-G-GA
* *
87082427 TTAG-CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCAGA
1 TTAGACACTGGCTCAAAAGCCCTTCCAGACCAAGCTCGGA
87082466 TT
1 TT
87082468 TAGCCCCCGA
Statistics
Matches: 98, Mismatches: 18, Indels: 20
0.72 0.13 0.15
Matches are distributed among these distances:
39 7 0.07
40 18 0.18
41 43 0.44
42 14 0.14
43 11 0.11
44 1 0.01
45 4 0.04
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (40 bp):
TTAGACACTGGCTCAAAAGCCCTTCCAGACCAAGCTCGGA
Found at i:87082416 original size:42 final size:41
Alignment explanation
Indices: 87082349--87082452 Score: 122
Period size: 42 Copynumber: 2.5 Consensus size: 41
87082339 GGATTAGACT
* * *
87082349 ACTGGCTCGAAGGCCCTTCGGAACTAAGTCC-GATTATGA-C
1 ACTGGCTCAAAAGCCCTTCGAAACTAAGTCCAG-TTATGAGC
* *
87082389 ACTGGCTCTAAAAAGCCCTTCGAAACTAAGTTCAGTTATTAGC
1 ACTGGCTC--AAAAGCCCTTCGAAACTAAGTCCAGTTATGAGC
87082432 ACTGGCTCAAAAGCCCTTCGA
1 ACTGGCTCAAAAGCCCTTCGA
87082453 GACCAAGCTC
Statistics
Matches: 55, Mismatches: 5, Indels: 7
0.82 0.07 0.10
Matches are distributed among these distances:
40 8 0.15
41 13 0.24
42 24 0.44
43 10 0.18
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (41 bp):
ACTGGCTCAAAAGCCCTTCGAAACTAAGTCCAGTTATGAGC
Found at i:87093340 original size:43 final size:43
Alignment explanation
Indices: 87093271--87093437 Score: 151
Period size: 43 Copynumber: 3.9 Consensus size: 43
87093261 AGCTCATACA
* * * * *
87093271 ATGCC-ATATCCCAGATATGGTATTACATGTTATCACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
* * ** *
87093313 ATGCCACTGTCCCAGACAGGGTCTTACACAAAATCGA-ATAACG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATC-ACATATCG
* * *
87093356 ACGCCAATGCCCCAGACATGGTCTTACACGTAATCACA-ATACA
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATAT-CG
* * *
87093399 ATGCCAATGTCCCAGATATGATCTTACATGTAATCACAT
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAT
87093438 CTCGGTAACC
Statistics
Matches: 97, Mismatches: 23, Indels: 8
0.76 0.18 0.06
Matches are distributed among these distances:
42 7 0.07
43 89 0.92
44 1 0.01
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.25
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
Found at i:87093809 original size:29 final size:27
Alignment explanation
Indices: 87093776--87093833 Score: 80
Period size: 29 Copynumber: 2.1 Consensus size: 27
87093766 CATATTTGGG
87093776 CATTTTTACACTTTAGCCCCTAAGTTTCA
1 CATTTTTACACTTTAGCCCCT-A-TTTCA
* *
87093805 CATTTTTACAGTTTAGTCCCTATTTCA
1 CATTTTTACACTTTAGCCCCTATTTCA
87093832 CA
1 CA
87093834 AATACACAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
27 7 0.26
28 1 0.04
29 19 0.70
ACGTcount: A:0.24, C:0.26, G:0.07, T:0.43
Consensus pattern (27 bp):
CATTTTTACACTTTAGCCCCTATTTCA
Found at i:87101242 original size:35 final size:35
Alignment explanation
Indices: 87101203--87101273 Score: 115
Period size: 35 Copynumber: 2.0 Consensus size: 35
87101193 TCTAGGATCA
*
87101203 CATATCTTTGAAGATCCCCTTCCATATTTGCCAAG
1 CATATCTTTGAAGATCACCTTCCATATTTGCCAAG
* *
87101238 CATATCTTTGAAGATTACTTTCCATATTTGCCAAG
1 CATATCTTTGAAGATCACCTTCCATATTTGCCAAG
87101273 C
1 C
87101274 TCTGGAGATG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.27, C:0.25, G:0.11, T:0.37
Consensus pattern (35 bp):
CATATCTTTGAAGATCACCTTCCATATTTGCCAAG
Found at i:87118691 original size:19 final size:19
Alignment explanation
Indices: 87118667--87118707 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
87118657 GTTATAATAT
*
87118667 TAATATTCCTTTAATATTA
1 TAATATTCATTTAATATTA
*
87118686 TAATATTCATTTCATATTA
1 TAATATTCATTTAATATTA
87118705 TAA
1 TAA
87118708 AACAATTTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.39, C:0.10, G:0.00, T:0.51
Consensus pattern (19 bp):
TAATATTCATTTAATATTA
Found at i:87124256 original size:16 final size:15
Alignment explanation
Indices: 87124214--87124258 Score: 56
Period size: 14 Copynumber: 3.0 Consensus size: 15
87124204 TTAAAAATAC
*
87124214 ATACATAAAAATATA
1 ATACATAATAATATA
*
87124229 ATATAT-ATAATATA
1 ATACATAATAATATA
87124243 ATACATACATAATATA
1 ATACATA-ATAATATA
87124259 GTATTAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
14 12 0.48
15 5 0.20
16 8 0.32
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (15 bp):
ATACATAATAATATA
Found at i:87124271 original size:30 final size:30
Alignment explanation
Indices: 87124201--87124283 Score: 84
Period size: 30 Copynumber: 2.8 Consensus size: 30
87124191 GAATAATGTG
* *
87124201 ATATTAAAAATA-CATACATA-AAAATATA
1 ATATTAAAAATATAATACATACATAATATA
*
87124229 ATA-TATATAATATAATACATACATAATATA
1 ATATTA-AAAATATAATACATACATAATATA
*
87124259 GTATTAAAAATATATATA-ATACATA
1 ATATTAAAAATATA-ATACATACATA
87124284 CACATTAGAA
Statistics
Matches: 45, Mismatches: 5, Indels: 8
0.78 0.09 0.14
Matches are distributed among these distances:
27 2 0.04
28 8 0.18
29 7 0.16
30 23 0.51
31 5 0.11
ACGTcount: A:0.59, C:0.06, G:0.01, T:0.34
Consensus pattern (30 bp):
ATATTAAAAATATAATACATACATAATATA
Found at i:87124536 original size:24 final size:24
Alignment explanation
Indices: 87124469--87124525 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 24
87124459 TAGTAATTAT
* * * *
87124469 AATACTAATACTAATAATAAATAC
1 AATAATAATAGTAAAAATAAACAC
*
87124493 AATAATAGTAGTAAAAATAAACAC
1 AATAATAATAGTAAAAATAAACAC
87124517 AATAATAAT
1 AATAATAAT
87124526 CATGAAAATA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.61, C:0.09, G:0.04, T:0.26
Consensus pattern (24 bp):
AATAATAATAGTAAAAATAAACAC
Found at i:87126100 original size:44 final size:44
Alignment explanation
Indices: 87126035--87127427 Score: 1539
Period size: 44 Copynumber: 32.2 Consensus size: 44
87126025 AAGAACACCG
* *
87126035 ATCTGTTATTTTCGATCTGCTCTCTGCCGCTACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
* *
87126079 ATCTGTTATCTTCGATTTGCTCTCCGCCGCTACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
* * * *
87126123 ATCTGTTATCTTCGACCTGTTCTCTGCCGCTACAGAGACGTCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
* *
87126167 ATCTGTTATCTTCGATCTGCTCTCCGTCGCTACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
* * *** *
87126211 ATCTATTATCTTCGATATGCTCTCCGTTACTACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
** *
87126255 ATC----ATCTTCGATCTGCTCTCTACCCCTACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
* *
87126295 ATCTGTTATCTTTGATCTGCTCTCCGCCGCTACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
* * **
87126339 ATCTGTTATCTTCGACCTGTTCTCCGCCGCTACAGAGACATCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
* * * *
87126383 ATCTGTTATCTTTGATCTGCTCTCCACCGCTACAGAGATGCCAG
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
* * *
87126427 ATCTGTTATCTTCAATCTGCTCTCCGTCGCTACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
* *
87126471 ATC----ATCTTCGATTTGCTCTCTGCCGCTACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
* * *
87126511 ATCTGTTATCTTCGATCTGCTCTCCGTCACTACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
* *
87126555 ATC----ATCTTCGATCTGCTCTCTGCCGCTACAGAGACGCAAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
* * *
87126595 ATCTGTTATCTTCGATCTGCTCTCTGCTGCTACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
* * *
87126639 ATCTGTTATCTTCGATTTGCTCTCCACCGCTACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
* * *
87126683 ATCTGTTATCTTTGATCTGCTCTCCGCCGTTACAAAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
* * *
87126727 ATCTGCTATCTTTGATCTGCTCTCTGCCGCTACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
* * * *
87126771 ATCTGTTATCTTCAATCTGCTCTCCGTCGTTACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
* *
87126815 ATC----ATCTTCGATTTGCTCTCCGCCGCTACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
* * * * *
87126855 ATC----ATCTTGGATTTGCT-T-CACCG-TAAACACGTGAAAGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCT--ACA-GAG-ACGCCAA
* * *
87126896 ATCAGCTATGTCTTCGATCTGCTCTCCGCCGCTACAGAGACGTCAA
1 ATCTG-T-TATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
* * *
87126942 ATCTGTTATCTTCGATCTGCTTTTCGCCGCTACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
* * *
87126986 ATC----ATCTTCGATCTACTCTTCGCCGCTACAGAGACGCCCA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
* *
87127026 ATCTGTTATCTTCAATCTGCTCTCCACCGCTACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
* *
87127070 ATCTGTTATCTTCGATCTGCTCGCCGCTGCTACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
* **
87127114 ATCTGCTATCTTCGATCTGCTCTCTACCGCTACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
* **
87127158 ATCTGTTATCTTCGATCTGCTTTCCGCCGCTACAGAGATACCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
* *
87127202 ATC----ATCTTCGATTTGCTCTCCACCGCTACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
* * * * *
87127242 ATC----ATCTTGGATTTGCT-T-CACCG-TAAACACGTGAAAGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCT--ACA-GAG-ACGCCAA
** * *
87127283 ATCAACTATGTCTTCGATCTGCTCTCCGCCGCTACAGAGACGTCAA
1 ATC-TGT-TATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
* ** *
87127329 ATCTGTTATCTTCGATCTGCTGTCTACCGCTGCAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
*
87127373 ATCTGTTATCTTCGATCTGCTCTCCACCGCTACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
87127417 ATCTGTTATCT
1 ATCTGTTATCT
87127428 GTTTCTGGTC
Statistics
Matches: 1146, Mismatches: 161, Indels: 84
0.82 0.12 0.06
Matches are distributed among these distances:
37 2 0.00
38 9 0.01
39 8 0.01
40 240 0.21
41 18 0.02
44 806 0.70
45 2 0.00
46 17 0.01
47 26 0.02
48 8 0.01
49 8 0.01
50 2 0.00
ACGTcount: A:0.23, C:0.31, G:0.17, T:0.30
Consensus pattern (44 bp):
ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
Found at i:87126419 original size:216 final size:217
Alignment explanation
Indices: 87126045--87127427 Score: 1579
Period size: 216 Copynumber: 6.4 Consensus size: 217
87126035 ATCTGTTATT
*
87126045 TTCGATCTGCTCTCTGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATTTGCTCTCCGCCGCT
1 TTCGATCTGCTCTCTGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCT
* * * *
87126110 ACAGAGATGCCAAATCTGTTATCTTCGACCTGTTCTCTGCCGCTACAGAGACGTCAAATCTGTTA
66 ACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTA
** * * ***
87126175 TCTTCGATCTGCTCTCCGTCGCTACAGAGATGCCAAATCTATTATCTTCGATATGCTCTCCGTTA
131 TCTTCGATCTGCTCTCCACCGCTACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCG
87126240 CTACAGAGATGCCAAATC-ATC
196 CTACAGAGATGCCAAATCTATC
* * *
87126261 TTCGATCTGCTCTCTACCCCTACAGAGACGCCAAATCTGTTATCTTTGATCTGCTCTCCGCCGCT
1 TTCGATCTGCTCTCTGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCT
* * **
87126326 ACAGAGATGCCAAATCTGTTATCTTCGACCTGTTCTCCGCCGCTACAGAGACATCAAATCTGTTA
66 ACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTA
* * * *
87126391 TCTTTGATCTGCTCTCCACCGCTACAGAGATGCCAGATCTGTTATCTTCAATCTGCTCTCCGTCG
131 TCTTCGATCTGCTCTCCACCGCTACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCG
87126456 CTACAGAGATGCCAAATC-ATC
196 CTACAGAGATGCCAAATCTATC
* * *
87126477 TTCGATTTGCTCTCTGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGTCACT
1 TTCGATCTGCTCTCTGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCT
* *
87126542 ACAGAGATGCCAAATC----ATCTTCGATCTGCTCTCTGCCGCTACAGAGACGCAAAATCTGTTA
66 ACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTA
** * * *
87126603 TCTTCGATCTGCTCTCTGCTGCTACAGAGATGCCAAATCTGTTATCTTCGATTTGCTCTCCACCG
131 TCTTCGATCTGCTCTCCACCGCTACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCG
87126668 CTACAGAGATGCCAAATCTGTTATC
196 CTACAGAGATGCCAAATC---TATC
* * * * * * *
87126693 TTTGATCTGCTCTCCGCCGTTACAAAGACGCCAAATCTGCTATCTTTGATCTGCTCTCTGCCGCT
1 TTCGATCTGCTCTCTGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCT
* * * * *
87126758 ACAGAGACGCCAAATCTGTTATCTTCAATCTGCTCTCCGTCGTTACAGAGATGCCAAATC----A
66 ACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTA
* * * * *
87126819 TCTTCGATTTGCTCTCCGCCGCTACAGAGATGCCAAATC----ATCTTGGATTTGCT-T-CACCG
131 TCTTCGATCTGCTCTCCACCGCTACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCG
* *
87126878 -TAAACACGTGAAAGCCAAATCAGCTATGTC
196 CT--ACA-GAG-ATGCCAAAT---CTA--TC
* * * *
87126908 TTCGATCTGCTCTCCGCCGCTACAGAGACGTCAAATCTGTTATCTTCGATCTGCTTTTCGCCGCT
1 TTCGATCTGCTCTCTGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCT
* * *
87126973 ACAGAGATGCCAAATC----ATCTTCGATCTACTCTTCGCCGCTACAGAGACGCCCAATCTGTTA
66 ACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTA
* * * *
87127034 TCTTCAATCTGCTCTCCACCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCGCCGCTG
131 TCTTCGATCTGCTCTCCACCGCTACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCG
*
87127099 CTACAGAGACGCCAAATCTGCTATC
196 CTACAGAGATGCCAAA--T-CTATC
* *
87127124 TTCGATCTGCTCTCTACCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTTTCCGCCGCT
1 TTCGATCTGCTCTCTGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCT
* * *
87127189 ACAGAGATACCAAATC----ATCTTCGATTTGCTCTCCACCGCTACAGAGACGCCAAATC----A
66 ACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTA
* * * * ** *
87127246 TCTTGGATTTGCT-T-CACCG-TAAACACGTGAAAGCCAAATCAACTATGTCTTCGATCTGCTCT
131 TCTTCGATCTGCTCTCCACCGCT--ACA-GAG-ATGCCAAATC-TGT-TATCTTCGATCTGCTCT
* *
87127308 CCGCCGCTACAGAGACGTCAAATCTGTTATC
190 CCGCCGCTACAGAGATGCCAAATC---TATC
* * * *
87127339 TTCGATCTGCTGTCTACCGCTGCAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCACCGCT
1 TTCGATCTGCTCTCTGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCT
*
87127404 ACAGAGACGCCAAATCTGTTATCT
66 ACAGAGATGCCAAATCTGTTATCT
87127428 GTTTCTGGTC
Statistics
Matches: 1010, Mismatches: 114, Indels: 83
0.84 0.09 0.07
Matches are distributed among these distances:
209 2 0.00
210 10 0.01
211 41 0.04
212 142 0.14
213 20 0.02
214 1 0.00
215 223 0.22
216 500 0.50
218 11 0.01
219 18 0.02
220 38 0.04
221 3 0.00
222 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.17, T:0.30
Consensus pattern (217 bp):
TTCGATCTGCTCTCTGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCT
ACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTA
TCTTCGATCTGCTCTCCACCGCTACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCG
CTACAGAGATGCCAAATCTATC
Found at i:87127078 original size:387 final size:388
Alignment explanation
Indices: 87126131--87127427 Score: 1717
Period size: 387 Copynumber: 3.3 Consensus size: 388
87126121 AAATCTGTTA
* * * * * *
87126131 TCTTCGACCTGTTCTCTGCCGCTACAGAGACGTCAAATCTGTTATCTTCGATCTGCTCTCCGTCG
1 TCTTCGATCTGCTCTCCGCCGCTACAGAGACGTCAAATCTGTTATCTTCGATCTGCTTTCTGCCG
* * *** *
87126196 CTACAGAGATGCCAAATCTATTATCTTCGATATGCTCTCCGTTACTACAGAGATGCCAAATC---
66 CTACAGAGACGCCAAATC---TATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGT
* *
87126258 -ATCTTCGATCTGCTCTCTACCCCTACAGAGACGCCAAATCTGTTATCTTTGATCTGCTCTCCGC
128 TATCTTCGATCTGCTCTCCACCGCTACAGAGACGCCAAATCTGTTATCTTTGATCTGCTCTCCGC
* * * * * **
87126322 CGCTACAGAGATGCCAAATCTGTTATCTTCGACCTGTTCTCCGCCGCTACAGAGACATCAAATCT
193 CGCTACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGCCGCTACAGAGACGCCAAATCT
* * * * *
87126387 GTTATCTTTGATCTGCTCTCCACCGCTACAGAGATGCCAGATCTGTTATCTTCAATCTGCTCTCC
258 GTTATCTTCGATCTGCTCTCCGCCGCTACAGAGATGCCAAATC----ATCTTCGATTTGCTCTCC
* * * * *
87126452 GTCGCTACAGAGATGCCAAATCATCTTCGATTTGCTCTCTGCCGCT--ACA-GAG-ACGCCAAAT
319 GCCGCTACAGAGATGCCAAATCATCTTGGATTTGCT-TC-ACCG-TAAACACGTGAAAGCCAAAT
* *
87126513 CTG-T-TA
381 CAGCTATG
* * * * *
87126519 TCTTCGATCTGCTCTCCGTCACTACAGAGATGCCAAATC----ATCTTCGATCTGCTCTCTGCCG
1 TCTTCGATCTGCTCTCCGCCGCTACAGAGACGTCAAATCTGTTATCTTCGATCTGCTTTCTGCCG
* * * *
87126580 CTACAGAGACGCAAAATCTGTTATCTTCGATCTGCTCTCTGCTGCTACAGAGATGCCAAATCTGT
66 CTACAGAGACGCCAAATC---TATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGT
* *
87126645 TATCTTCGATTTGCTCTCCACCGCTACAGAGATGCCAAATCTGTTATCTTTGATCTGCTCTCCGC
128 TATCTTCGATCTGCTCTCCACCGCTACAGAGACGCCAAATCTGTTATCTTTGATCTGCTCTCCGC
* * *
87126710 CGTTACAAAGACGCCAAATCTGCTATCTTTGATCTGCTCTCTGCCGCTACAGAGACGCCAAATCT
193 CGCTACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGCCGCTACAGAGACGCCAAATCT
* * *
87126775 GTTATCTTCAATCTGCTCTCCGTCGTTACAGAGATGCCAAATCATCTTCGATTTGCTCTCCGCCG
258 GTTATCTTCGATCTGCTCTCCGCCGCTACAGAGATGCCAAATCATCTTCGATTTGCTCTCCGCCG
87126840 CTACAGAGATGCCAAATCATCTTGGATTTGCTTCACCGTAAACACGTGAAAGCCAAATCAGCTAT
323 CTACAGAGATGCCAAATCATCTTGGATTTGCTTCACCGTAAACACGTGAAAGCCAAATCAGCTAT
87126905 G
388 G
87126906 TCTTCGATCTGCTCTCCGCCGCTACAGAGACGTCAAATCTGTTATCTTCGATCTGCTTT-TCGCC
1 TCTTCGATCTGCTCTCCGCCGCTACAGAGACGTCAAATCTGTTATCTTCGATCTGCTTTCT-GCC
* * * *
87126970 GCTACAGAGATGCCAAATC-ATCTTCGATCTACTCTTCGCCGCTACAGAGACGCCCAATCTGTTA
65 GCTACAGAGACGCCAAATCTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTA
* * * *
87127034 TCTTCAATCTGCTCTCCACCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCGCCGCTG
130 TCTTCGATCTGCTCTCCACCGCTACAGAGACGCCAAATCTGTTATCTTTGATCTGCTCTCCGCCG
*
87127099 CTACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTACCGCTACAGAGACGCCAAATCTGT
195 CTACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGCCGCTACAGAGACGCCAAATCTGT
* * *
87127164 TATCTTCGATCTGCTTTCCGCCGCTACAGAGATACCAAATCATCTTCGATTTGCTCTCCACCGCT
260 TATCTTCGATCTGCTCTCCGCCGCTACAGAGATGCCAAATCATCTTCGATTTGCTCTCCGCCGCT
* *
87127229 ACAGAGACGCCAAATCATCTTGGATTTGCTTCACCGTAAACACGTGAAAGCCAAATCAACTATG
325 ACAGAGATGCCAAATCATCTTGGATTTGCTTCACCGTAAACACGTGAAAGCCAAATCAGCTATG
* *
87127293 TCTTCGATCTGCTCTCCGCCGCTACAGAGACGTCAAATCTGTTATCTTCGATCTGCTGTCTACCG
1 TCTTCGATCTGCTCTCCGCCGCTACAGAGACGTCAAATCTGTTATCTTCGATCTGCTTTCTGCCG
* *
87127358 CTGCAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCACCGCTACAGAGACGCCAAATCTGT
66 CTACAGAGACGCCAAATC---TATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGT
87127423 TATCT
128 TATCT
87127428 GTTTCTGGTC
Statistics
Matches: 805, Mismatches: 84, Indels: 37
0.87 0.09 0.04
Matches are distributed among these distances:
381 1 0.00
382 3 0.00
383 5 0.01
384 127 0.16
385 10 0.01
386 1 0.00
387 393 0.49
388 185 0.23
390 1 0.00
391 79 0.10
ACGTcount: A:0.23, C:0.31, G:0.17, T:0.30
Consensus pattern (388 bp):
TCTTCGATCTGCTCTCCGCCGCTACAGAGACGTCAAATCTGTTATCTTCGATCTGCTTTCTGCCG
CTACAGAGACGCCAAATCTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTAT
CTTCGATCTGCTCTCCACCGCTACAGAGACGCCAAATCTGTTATCTTTGATCTGCTCTCCGCCGC
TACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGCCGCTACAGAGACGCCAAATCTGTT
ATCTTCGATCTGCTCTCCGCCGCTACAGAGATGCCAAATCATCTTCGATTTGCTCTCCGCCGCTA
CAGAGATGCCAAATCATCTTGGATTTGCTTCACCGTAAACACGTGAAAGCCAAATCAGCTATG
Found at i:87141392 original size:40 final size:40
Alignment explanation
Indices: 87141284--87141493 Score: 284
Period size: 40 Copynumber: 5.3 Consensus size: 40
87141274 ATTCGGATGG
* *
87141284 TAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA
1 TAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
* * *
87141324 -ATTCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTATTA
1 TA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
* * *
87141363 TATCCGGGCAAAGTCCCGAAGGCATTTGTGCGAGTTATTA
1 TAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
87141403 TAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
1 TAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
*
87141443 TAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTA
1 TAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTA
*
87141483 TATCC-GGCTAA
1 TAACCGGGCTAA
87141494 ACCCCAAAGG
Statistics
Matches: 154, Mismatches: 12, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
39 41 0.27
40 113 0.73
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
Found at i:87149454 original size:40 final size:40
Alignment explanation
Indices: 87149352--87149572 Score: 252
Period size: 40 Copynumber: 5.6 Consensus size: 40
87149342 AATTCAGATG
* * *
87149352 ATAACTGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * * *
87149392 A-ATTCCGCGCTAAG-CCCGAAGGCAATTGTGCGAGTTATT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
87149431 ATATCCGGGCAAAGTCCCGAAGGCATTTGTGCGAGTTATT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
87149471 ATAACCGGGCAAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
87149511 ATAACCGGGCTAAGTCCCAAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* **
87149551 ATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
87149573 TACTTGGTTT
Statistics
Matches: 158, Mismatches: 19, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
39 47 0.30
40 111 0.70
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:87149569 original size:119 final size:119
Alignment explanation
Indices: 87149352--87149572 Score: 279
Period size: 119 Copynumber: 1.9 Consensus size: 119
87149342 AATTCAGATG
* * * * *
87149352 ATAACTGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGCGCTAAGCCCGAAGGCAA
1 ATAACCGGGCAAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGCGCTAAGCCCAAAGGCAA
* * *
87149417 TTGTGCGAGTTATTATATCCGGGCAAAGTCCCGAAGGCATTTGTGCGAGTTATT
66 TTGAGCGAGTTACTATATCCGGGCAAAGCCCCGAAGGCATTTGTGCGAGTTATT
* *
87149471 ATAACCGGGCAAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCAAAGGC
1 ATAACCGGGCAAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-ACCGCGCTAAG-CCCAAAGGC
*
87149535 ATTTGAGCGAG-TAGCTATATCC-GGCTAAA-CCCCGAAGG
64 AATTGAGCGAGTTA-CTATATCCGGGC-AAAGCCCCGAAGG
87149573 TACTTGGTTT
Statistics
Matches: 87, Mismatches: 11, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
118 2 0.02
119 58 0.67
120 27 0.31
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.24
Consensus pattern (119 bp):
ATAACCGGGCAAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGCGCTAAGCCCAAAGGCAA
TTGAGCGAGTTACTATATCCGGGCAAAGCCCCGAAGGCATTTGTGCGAGTTATT
Found at i:87151212 original size:3 final size:3
Alignment explanation
Indices: 87151160--87151186 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
87151150 AATGACAATG
87151160 ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA
87151187 TAACGTAGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:87151427 original size:16 final size:15
Alignment explanation
Indices: 87151388--87151455 Score: 59
Period size: 14 Copynumber: 4.5 Consensus size: 15
87151378 TTAAAAATGC
87151388 ATACATAA-AATATA
1 ATACATAATAATATA
*
87151402 ATATAT-ATAATATA
1 ATACATAATAATATA
87151416 ATACATACATAATATA
1 ATACATA-ATAATATA
* * *
87151432 GTATTAAAATATATATA
1 ATA-CATAATA-ATATA
87151449 ATACATA
1 ATACATA
87151456 CACATTAGAA
Statistics
Matches: 41, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
13 1 0.02
14 16 0.39
16 15 0.37
17 9 0.22
ACGTcount: A:0.57, C:0.06, G:0.01, T:0.35
Consensus pattern (15 bp):
ATACATAATAATATA
Found at i:87151705 original size:24 final size:24
Alignment explanation
Indices: 87151638--87151694 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 24
87151628 TAGTAATTAT
* * * *
87151638 AATACTAATACTAATAATAAATAC
1 AATAATAATAGTAAAAATAAACAC
*
87151662 AATAATAGTAGTAAAAATAAACAC
1 AATAATAATAGTAAAAATAAACAC
87151686 AATAATAAT
1 AATAATAAT
87151695 CATGAAAATA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.61, C:0.09, G:0.04, T:0.26
Consensus pattern (24 bp):
AATAATAATAGTAAAAATAAACAC
Found at i:87152423 original size:13 final size:13
Alignment explanation
Indices: 87152407--87152432 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
87152397 CATCCGTCGC
87152407 CGCCGGCCACCGT
1 CGCCGGCCACCGT
87152420 CGCCGGCCACCGT
1 CGCCGGCCACCGT
87152433 GCGCGGTAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.54, G:0.31, T:0.08
Consensus pattern (13 bp):
CGCCGGCCACCGT
Found at i:87153955 original size:20 final size:20
Alignment explanation
Indices: 87153912--87153973 Score: 72
Period size: 20 Copynumber: 3.1 Consensus size: 20
87153902 TTATAAAGCT
** *
87153912 ATAAAAATATTATTTAAATC
1 ATAAAAATATTATAAAAATA
*
87153932 ATAAAAAT-TTCTAAAATATA
1 ATAAAAATATTATAAAA-ATA
87153952 ATAAAAATATTATAAAAATA
1 ATAAAAATATTATAAAAATA
87153972 AT
1 AT
87153974 TTGCATGTTA
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
19 5 0.14
20 23 0.66
21 7 0.20
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.35
Consensus pattern (20 bp):
ATAAAAATATTATAAAAATA
Found at i:87157121 original size:27 final size:26
Alignment explanation
Indices: 87157078--87157134 Score: 87
Period size: 27 Copynumber: 2.2 Consensus size: 26
87157068 AAAAAATTAC
*
87157078 TAAATTAATAAATATTAACTTATCGA
1 TAAATTAAAAAATATTAACTTATCGA
*
87157104 TAAATTAAAAAAATATTAATTTATCGA
1 TAAATT-AAAAAATATTAACTTATCGA
87157131 TAAA
1 TAAA
87157135 ATAATAATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
26 6 0.21
27 22 0.79
ACGTcount: A:0.54, C:0.05, G:0.04, T:0.37
Consensus pattern (26 bp):
TAAATTAAAAAATATTAACTTATCGA
Found at i:87159746 original size:22 final size:22
Alignment explanation
Indices: 87159721--87159765 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
87159711 TTGAAAAGTG
87159721 TAGGAATATTCTGTAAATATTT
1 TAGGAATATTCTGTAAATATTT
* *
87159743 TAGGAATATTTTGTAGATATTT
1 TAGGAATATTCTGTAAATATTT
87159765 T
1 T
87159766 TTTATTAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49
Consensus pattern (22 bp):
TAGGAATATTCTGTAAATATTT
Found at i:87163576 original size:22 final size:22
Alignment explanation
Indices: 87163548--87163589 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
87163538 GGGAGTGTAA
87163548 GAATATTCTGTAAATATTTTAG
1 GAATATTCTGTAAATATTTTAG
* *
87163570 GAATATTTTGTAGATATTTT
1 GAATATTCTGTAAATATTTT
87163590 TTTTATTAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.02, G:0.14, T:0.50
Consensus pattern (22 bp):
GAATATTCTGTAAATATTTTAG
Found at i:87170957 original size:22 final size:21
Alignment explanation
Indices: 87170917--87170957 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
87170907 TAAATTTTTA
* *
87170917 TGAATTTTTATATTTTTTATT
1 TGAATTTTTATAATATTTATT
87170938 TGAATATTTTATAATATTTA
1 TGAAT-TTTTATAATATTTA
87170958 GGTTATTTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 5 0.29
22 12 0.71
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.63
Consensus pattern (21 bp):
TGAATTTTTATAATATTTATT
Found at i:87171339 original size:30 final size:28
Alignment explanation
Indices: 87171284--87171356 Score: 83
Period size: 30 Copynumber: 2.5 Consensus size: 28
87171274 AATTTTTTTC
*
87171284 AAAAATAATAATAATAATCAGAAAAAAAT
1 AAAAATTATAA-AATAATCAGAAAAAAAT
* *
87171313 AAAAGTTATAAAATAAATCTAGAAAAATAT
1 AAAAATTATAAAAT-AATC-AGAAAAAAAT
87171343 AAAAATTATTAAAA
1 AAAAATTA-TAAAA
87171357 ATTTAAAAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
28 3 0.08
29 13 0.35
30 16 0.43
31 5 0.14
ACGTcount: A:0.68, C:0.03, G:0.04, T:0.25
Consensus pattern (28 bp):
AAAAATTATAAAATAATCAGAAAAAAAT
Found at i:87171348 original size:18 final size:17
Alignment explanation
Indices: 87171335--87171379 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 17
87171325 ATAAATCTAG
87171335 AAAAATATAAAAATTATT
1 AAAAATATAAAAATTA-T
*
87171353 AAAAATTTAAAAATATAT
1 AAAAATATAAAAAT-TAT
87171371 AAAAATATA
1 AAAAATATA
87171380 TTAAAATTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 22 0.92
19 2 0.08
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (17 bp):
AAAAATATAAAAATTAT
Found at i:87171355 original size:10 final size:10
Alignment explanation
Indices: 87171342--87171464 Score: 60
Period size: 10 Copynumber: 12.0 Consensus size: 10
87171332 TAGAAAAATA
87171342 TAAAAATTAT
1 TAAAAATTAT
87171352 TAAAAA-T-T
1 TAAAAATTAT
87171360 TAAAAA-TAT
1 TAAAAATTAT
87171369 ATAAAAATATAT
1 -TAAAAAT-TAT
87171381 T-AAAATTAAT
1 TAAAAATT-AT
*
87171391 TAAAATTTA-
1 TAAAAATTAT
* **
87171400 GAAAAAGAAT
1 TAAAAATTAT
*
87171410 ATAATAAAATAT
1 -TAA-AAATTAT
*
87171422 AATAAAATTAT
1 TA-AAAATTAT
*
87171433 TTAAAA-TAT
1 TAAAAATTAT
87171442 ATACAAAATTTAT
1 -TA-AAAA-TTAT
87171455 TAAAAATTAT
1 TAAAAATTAT
87171465 AATAAATAAA
Statistics
Matches: 86, Mismatches: 13, Indels: 28
0.68 0.10 0.22
Matches are distributed among these distances:
8 8 0.09
9 11 0.13
10 30 0.35
11 23 0.27
12 11 0.13
13 3 0.03
ACGTcount: A:0.62, C:0.01, G:0.02, T:0.36
Consensus pattern (10 bp):
TAAAAATTAT
Found at i:87171358 original size:28 final size:28
Alignment explanation
Indices: 87171299--87171385 Score: 88
Period size: 30 Copynumber: 3.0 Consensus size: 28
87171289 TAATAATAAT
* * *
87171299 AATC-AGAAAAAAATAAAAGTTATAAAATA
1 AATCTAGAAAAATATAAAAATTAT-TAA-A
87171328 AATCTAGAAAAATATAAAAATTATTAAA
1 AATCTAGAAAAATATAAAAATTATTAAA
*
87171356 AATTTA-AAAATATATAAAAATATATTAAA
1 AATCTAGAAAA-ATATAAAAAT-TATTAAA
87171385 A
1 A
87171386 TTAATTAAAA
Statistics
Matches: 51, Mismatches: 4, Indels: 6
0.84 0.07 0.10
Matches are distributed among these distances:
27 4 0.08
28 16 0.31
29 14 0.27
30 17 0.33
ACGTcount: A:0.67, C:0.02, G:0.03, T:0.28
Consensus pattern (28 bp):
AATCTAGAAAAATATAAAAATTATTAAA
Found at i:87171375 original size:11 final size:11
Alignment explanation
Indices: 87171335--87171472 Score: 50
Period size: 10 Copynumber: 13.5 Consensus size: 11
87171325 ATAAATCTAG
87171335 AAAA-ATAT-A
1 AAAATATATAA
*
87171344 AAAAT-TATTA
1 AAAATATATAA
87171354 AAAAT-T-T-A
1 AAAATATATAA
87171362 AAAATATAT-A
1 AAAATATATAA
*
87171372 AAAATATATTA
1 AAAATATATAA
* *
87171383 AAATTA-AT-T
1 AAAATATATAA
* *
87171392 AAAATTTAGAA
1 AAAATATATAA
87171403 AAAGA-ATATAA
1 AAA-ATATATAA
*
87171414 TAAAATATA-AT
1 -AAAATATATAA
**
87171425 AAAAT-TATTT
1 AAAATATATAA
*
87171435 AAAATATATAC
1 AAAATATATAA
* *
87171446 AAAATTTATTA
1 AAAATATATAA
87171457 AAAAT-TATAA
1 AAAATATATAA
*
87171467 TAAATA
1 AAAATA
87171473 AAAAAATTCC
Statistics
Matches: 99, Mismatches: 17, Indels: 24
0.71 0.12 0.17
Matches are distributed among these distances:
8 6 0.06
9 15 0.15
10 40 0.40
11 31 0.31
12 7 0.07
ACGTcount: A:0.64, C:0.01, G:0.01, T:0.34
Consensus pattern (11 bp):
AAAATATATAA
Found at i:87171395 original size:20 final size:20
Alignment explanation
Indices: 87171335--87171459 Score: 71
Period size: 21 Copynumber: 6.2 Consensus size: 20
87171325 ATAAATCTAG
*
87171335 AAAA-ATATAAAAATT-ATT
1 AAAATATATTAAAATTAATT
* *
87171353 AAAA-AT-TTAAAAATATATA
1 AAAATATATTAAAATTA-ATT
87171372 AAAATATATTAAAATTAATT
1 AAAATATATTAAAATTAATT
* **
87171392 AAAATTTAGAAAAAGAATATAA-T
1 AAAA--TATATTAA-AAT-TAATT
* *
87171415 AAAATATAATAAAATTATTT
1 AAAATATATTAAAATTAATT
* *
87171435 AAAATATATACAAAATTTATT
1 AAAATATAT-TAAAATTAATT
87171456 AAAA
1 AAAA
87171460 ATTATAATAA
Statistics
Matches: 82, Mismatches: 15, Indels: 17
0.72 0.13 0.15
Matches are distributed among these distances:
17 6 0.07
18 6 0.07
19 8 0.10
20 20 0.24
21 26 0.32
22 5 0.06
23 8 0.10
24 3 0.04
ACGTcount: A:0.64, C:0.01, G:0.02, T:0.34
Consensus pattern (20 bp):
AAAATATATTAAAATTAATT
Found at i:87171466 original size:43 final size:39
Alignment explanation
Indices: 87171335--87171470 Score: 111
Period size: 43 Copynumber: 3.4 Consensus size: 39
87171325 ATAAATCTAG
87171335 AAAAATAT-A-AAAATTATTAAAA-ATTTAAAAATATA-T
1 AAAAATATAATAAAATTATTAAAATA-TTAAAAATATATT
* * *
87171371 AAAAATATATTAAAATTAATTAAAAT-TTAGAAAAAGAATATA
1 AAAAATATAATAAAATT-ATTAAAATATT--AAAAA-TATATT
*
87171413 ATAAAATATAATAAAATTATTTAAAATATATACAAAATTTATT
1 A-AAAATATAATAAAATTA-TTAAAATAT-TA-AAAATATATT
87171456 AAAAATTATAATAAA
1 AAAAA-TATAATAAA
87171471 TAAAAAAATT
Statistics
Matches: 79, Mismatches: 7, Indels: 21
0.74 0.07 0.20
Matches are distributed among these distances:
36 8 0.10
38 8 0.10
39 7 0.09
40 5 0.06
41 3 0.04
42 6 0.08
43 36 0.46
44 5 0.06
45 1 0.01
ACGTcount: A:0.64, C:0.01, G:0.01, T:0.34
Consensus pattern (39 bp):
AAAAATATAATAAAATTATTAAAATATTAAAAATATATT
Found at i:87171574 original size:18 final size:18
Alignment explanation
Indices: 87171552--87171605 Score: 63
Period size: 18 Copynumber: 2.9 Consensus size: 18
87171542 AGAAATATAG
87171552 AAAAAGTATAAAATTTATT
1 AAAAA-TATAAAATTTATT
* * *
87171571 AAAATTATTAATTTTATT
1 AAAAATATAAAATTTATT
*
87171589 AAAAATATAAAAATTAT
1 AAAAATATAAAATTTAT
87171606 AATTATTAAA
Statistics
Matches: 28, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
18 24 0.86
19 4 0.14
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (18 bp):
AAAAATATAAAATTTATT
Found at i:87171578 original size:9 final size:9
Alignment explanation
Indices: 87171560--87171632 Score: 53
Period size: 9 Copynumber: 8.1 Consensus size: 9
87171550 AGAAAAAGTA
87171560 TAAAATTTAT
1 TAAAA-TTAT
87171570 TAAAATTAT
1 TAAAATTAT
**
87171579 TAATTTTAT
1 TAAAATTAT
*
87171588 TAAAAATA-
1 TAAAATTAT
87171596 TAAAA--AT
1 TAAAATTAT
*
87171603 TATAATTAT
1 TAAAATTAT
*
87171612 TAAAAATATT
1 TAAAATTA-T
87171622 TAAAAGTTAT
1 TAAAA-TTAT
87171632 T
1 T
87171633 GTACCATATT
Statistics
Matches: 49, Mismatches: 9, Indels: 10
0.72 0.13 0.15
Matches are distributed among these distances:
6 1 0.02
7 4 0.08
8 5 0.10
9 24 0.49
10 13 0.27
11 2 0.04
ACGTcount: A:0.53, C:0.00, G:0.01, T:0.45
Consensus pattern (9 bp):
TAAAATTAT
Found at i:87173007 original size:6 final size:6
Alignment explanation
Indices: 87172992--87173029 Score: 69
Period size: 6 Copynumber: 6.5 Consensus size: 6
87172982 TGTTATAAAA
87172992 TTCA-T TTCATT TTCATT TTCATT TTCATT TTCATT TTC
1 TTCATT TTCATT TTCATT TTCATT TTCATT TTCATT TTC
87173030 TATTACACCT
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 4 0.12
6 28 0.88
ACGTcount: A:0.16, C:0.18, G:0.00, T:0.66
Consensus pattern (6 bp):
TTCATT
Found at i:87176403 original size:40 final size:40
Alignment explanation
Indices: 87176302--87176446 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
87176292 TACTCGAATG
* *
87176302 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCAACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
87176343 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
87176383 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
87176423 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
87176447 CTTGTGCAAG
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 1 0.01
40 61 0.67
41 28 0.31
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:87178909 original size:13 final size:13
Alignment explanation
Indices: 87178883--87178926 Score: 74
Period size: 13 Copynumber: 3.5 Consensus size: 13
87178873 TTCACGGAAT
87178883 AATTTTG-T-GAA
1 AATTTTGTTCGAA
87178894 AATTTTGTTCGAA
1 AATTTTGTTCGAA
87178907 AATTTTGTTCGAA
1 AATTTTGTTCGAA
87178920 AATTTTG
1 AATTTTG
87178927 ACGTTCGGGC
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
11 7 0.23
12 1 0.03
13 23 0.74
ACGTcount: A:0.32, C:0.05, G:0.16, T:0.48
Consensus pattern (13 bp):
AATTTTGTTCGAA
Found at i:87186487 original size:20 final size:19
Alignment explanation
Indices: 87186450--87186496 Score: 85
Period size: 19 Copynumber: 2.4 Consensus size: 19
87186440 ATGAATTAGT
87186450 AACTATAACTCGGTAAAAAA
1 AACT-TAACTCGGTAAAAAA
87186470 AACTTAACTCGGTAAAAAA
1 AACTTAACTCGGTAAAAAA
87186489 AACTTAAC
1 AACTTAAC
87186497 CTAAACAAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 23 0.85
20 4 0.15
ACGTcount: A:0.53, C:0.17, G:0.09, T:0.21
Consensus pattern (19 bp):
AACTTAACTCGGTAAAAAA
Found at i:87187186 original size:13 final size:14
Alignment explanation
Indices: 87187163--87187191 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
87187153 GATTGATTAA
87187163 AACTAAAATTAACT
1 AACTAAAATTAACT
87187177 AACT-AAATTAACT
1 AACTAAAATTAACT
87187190 AA
1 AA
87187192 TGAATGCATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.59, C:0.14, G:0.00, T:0.28
Consensus pattern (14 bp):
AACTAAAATTAACT
Found at i:87191185 original size:52 final size:52
Alignment explanation
Indices: 87191124--87191227 Score: 199
Period size: 52 Copynumber: 2.0 Consensus size: 52
87191114 GAACCCAATT
87191124 ACATGTATCGCATCCATTATGAACTCAGACCAACTCAACGAGCTCAGATGCC
1 ACATGTATCGCATCCATTATGAACTCAGACCAACTCAACGAGCTCAGATGCC
*
87191176 ACATGTATCGCATCCATTATGAACTCAGACCAACTCAACGAGCTCGGATGCC
1 ACATGTATCGCATCCATTATGAACTCAGACCAACTCAACGAGCTCAGATGCC
87191228 GCATACATAT
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.32, C:0.31, G:0.16, T:0.21
Consensus pattern (52 bp):
ACATGTATCGCATCCATTATGAACTCAGACCAACTCAACGAGCTCAGATGCC
Found at i:87192728 original size:27 final size:27
Alignment explanation
Indices: 87192651--87192732 Score: 85
Period size: 27 Copynumber: 3.0 Consensus size: 27
87192641 TCATAAAGCC
87192651 AATATTCATATCAGAAGTCAATCATAA
1 AATATTCATATCAGAAGTCAATCATAA
* * * * * **
87192678 AGT-TCCTTATAACATTTCACATCATAA
1 AATATTCATATCAGAAGTCA-ATCATAA
87192705 AATATTCATATCAGAAGTCAATCATAA
1 AATATTCATATCAGAAGTCAATCATAA
87192732 A
1 A
87192733 GTCCCTTATA
Statistics
Matches: 39, Mismatches: 14, Indels: 4
0.68 0.25 0.07
Matches are distributed among these distances:
26 10 0.26
27 19 0.49
28 10 0.26
ACGTcount: A:0.45, C:0.17, G:0.06, T:0.32
Consensus pattern (27 bp):
AATATTCATATCAGAAGTCAATCATAA
Found at i:87194173 original size:25 final size:25
Alignment explanation
Indices: 87194146--87194366 Score: 139
Period size: 25 Copynumber: 8.9 Consensus size: 25
87194136 AAGCTCCTTT
* *
87194146 GAGCCATATAACGGGAAGCTCATGT
1 GAGCCATATAACAGGAAGCTCATGA
* * * *
87194171 GAGCCATGTAACAAGAAGCTCTTGT
1 GAGCCATATAACAGGAAGCTCATGA
* * * *
87194196 GAGCCAAATATCAAGAATCTCAT-A
1 GAGCCATATAACAGGAAGCTCATGA
* **
87194220 CGAGCCATA-AACGGGAAGCTCAAAA
1 -GAGCCATATAACAGGAAGCTCATGA
* * * *
87194245 GAGCCAAAT-TCAGAAAGCTCATGC
1 GAGCCATATAACAGGAAGCTCATGA
87194269 GAGCCAT-TAATC-GAGAAGCTCATGA
1 GAGCCATATAA-CAG-GAAGCTCATGA
* *
87194294 GAGCTA-ATTAACAGGAAGCTCGTGA
1 GAGCCATA-TAACAGGAAGCTCATGA
* * *
87194319 GAGCCAAATAACGGGAAGCTCGTGA
1 GAGCCATATAACAGGAAGCTCATGA
* * *
87194344 GTGCCATATATCAGGATGCTCAT
1 GAGCCATATAACAGGAAGCTCAT
87194367 AAGTGCTGTT
Statistics
Matches: 149, Mismatches: 37, Indels: 20
0.72 0.18 0.10
Matches are distributed among these distances:
23 1 0.01
24 32 0.21
25 111 0.74
26 5 0.03
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.19
Consensus pattern (25 bp):
GAGCCATATAACAGGAAGCTCATGA
Found at i:87194251 original size:49 final size:49
Alignment explanation
Indices: 87194196--87194290 Score: 122
Period size: 49 Copynumber: 1.9 Consensus size: 49
87194186 AAGCTCTTGT
* *
87194196 GAGCCAAATATCA-AGAATCTCATACGAGCCA-TAAACGGGAAGCTCAAAA
1 GAGCCAAAT-TCAGA-AAGCTCATACGAGCCATTAAACGAGAAGCTCAAAA
* *
87194245 GAGCCAAATTCAGAAAGCTCATGCGAGCCATTAATCGAGAAGCTCA
1 GAGCCAAATTCAGAAAGCTCATACGAGCCATTAAACGAGAAGCTCA
87194291 TGAGAGCTAA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
48 17 0.43
49 23 0.57
ACGTcount: A:0.41, C:0.23, G:0.20, T:0.16
Consensus pattern (49 bp):
GAGCCAAATTCAGAAAGCTCATACGAGCCATTAAACGAGAAGCTCAAAA
Found at i:87194297 original size:49 final size:49
Alignment explanation
Indices: 87194160--87194366 Score: 157
Period size: 50 Copynumber: 4.2 Consensus size: 49
87194150 CATATAACGG
* * * *
87194160 GAAGCTCATGTGAGCCATGTAACAAGAAGCTCTTGTGAGCCAAATATCAA
1 GAAGCTCATGCGAGCCAT-TAACGAGAAGCTCATGAGAGCCAAATATCAA
* * * * **
87194210 GAATCTCATACGAGCCATAAACGGGAAGCTCAAAAGAGCCAAAT-TC-A
1 GAAGCTCATGCGAGCCATTAACGAGAAGCTCATGAGAGCCAAATATCAA
* * * *
87194257 GAAAGCTCATGCGAGCCATTAATCGAGAAGCTCATGAGAGCTAATTAACAG
1 G-AAGCTCATGCGAGCCATTAA-CGAGAAGCTCATGAGAGCCAAATATCAA
* * * * * * * *
87194308 GAAGCTCGTGAGAGCCAAATAACGGGAAGCTCGTGAGTGCCATATATCAG
1 GAAGCTCATGCGAGCC-ATTAACGAGAAGCTCATGAGAGCCAAATATCAA
*
87194358 GATGCTCAT
1 GAAGCTCAT
87194367 AAGTGCTGTT
Statistics
Matches: 120, Mismatches: 32, Indels: 10
0.74 0.20 0.06
Matches are distributed among these distances:
47 2 0.02
48 19 0.16
49 37 0.31
50 57 0.47
51 5 0.04
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.19
Consensus pattern (49 bp):
GAAGCTCATGCGAGCCATTAACGAGAAGCTCATGAGAGCCAAATATCAA
Found at i:87202938 original size:43 final size:43
Alignment explanation
Indices: 87202865--87203014 Score: 221
Period size: 43 Copynumber: 3.5 Consensus size: 43
87202855 CTAAACTCAT
* * * ** * *
87202865 TCACTGGCATT-TCGCCTGCTATGCTTGAAGCCCGATATCATT
1 TCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATTATC
*
87202907 TCACCGGCATTATAACCTGCTAGGCCCGAAGCCCGATATTATC
1 TCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATTATC
87202950 TCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATTATC
1 TCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATTATC
87202993 TCACCGGCATTATAGCCTGCTA
1 TCACCGGCATTATAGCCTGCTA
87203015 CGTAGCCTGA
Statistics
Matches: 98, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
42 10 0.10
43 88 0.90
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (43 bp):
TCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATTATC
Found at i:87209023 original size:17 final size:16
Alignment explanation
Indices: 87209001--87209032 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
87208991 TAATATATTA
87209001 TTGCTATTATTATTATG
1 TTGCTATT-TTATTATG
87209018 TTGCTATTTTATTAT
1 TTGCTATTTTATTAT
87209033 TTATCTAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.22, C:0.06, G:0.09, T:0.62
Consensus pattern (16 bp):
TTGCTATTTTATTATG
Done.